HHsearch alignment for GI: 254781215 and conserved domain: PRK04914
>PRK04914 ATP-dependent helicase HepA; Validated.
Probab=96.85 E-value=0.035 Score=32.38 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=85.8
Q ss_pred CCCCCCCCCH----HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH
Q ss_conf 7565557845----899999999999874056555421012465025765978999999999998089966999808589
Q gi|254781215|r 43 TPLEGFSAPR----SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118 (511)
Q Consensus 43 ~~~~~~~~P~----~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~ 118 (511)
T Consensus 140 ~~~~gl~g~r~~l~pHQ~~ia~~v~~r-------~---~PRvLLADEVGLGKTIEAGLIl~ell~rgra~RvLIvvP~~L 209 (955)
T PRK04914 140 SPLRGLRGARAGLIPHQLYIAHEVGRR-------H---APRVLLADEVGLGKTIEAGLIIHQQLLTGRAERVLIIVPETL 209 (955)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHC-------C---CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 951132233246563799999999714-------5---884897058888689999999999997487777999927799
Q ss_pred HHHHHHH-HHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEE
Q ss_conf 9999999-999999985500013444322222233344432111235786169853035755610021202676149997
Q gi|254781215|r 119 QLKTTLW-AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197 (511)
Q Consensus 119 Q~~~ilw-~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~ 197 (511)
T Consensus 210 ~~Q---W~~EL~~KF~L-----~f~i~D~~r~~-~~~~~~~---NpF~~~~~vI~Sld~l~~~~~~~e~l~~a~WDLVIV 277 (955)
T PRK04914 210 QHQ---WLVEMLRRFNL-----RFSLFDEERCA-EAQADAD---NPFETEQLVICSLDFLRKNKKRLEQALDAEWDLLVV 277 (955)
T ss_pred HHH---HHHHHHHHCCC-----CCEEECCHHHH-HHHCCCC---CCCCCCCEEEEEHHHHCCCHHHHHHHHCCCCCEEEE
T ss_conf 899---99999998399-----80995518888-7533579---975458979987899603967899873389888997
Q ss_pred CCHHCCC------HHHHHHHHHHHCCCCCCEEEEEECCCCC--CCCHHHH
Q ss_conf 1110299------7889888888507998138998238998--7655676
Q gi|254781215|r 198 DEASGTP------DVINLGILGFLTERNANRFWIMTSNPRR--LSGKFYE 239 (511)
Q Consensus 198 DEAsgI~------d~i~e~i~~~Lt~~g~~~~~i~~~nP~~--~~g~fy~ 239 (511)
T Consensus 278 DEAHhL~~~~~~~s~~y~lve~-La~-~~~~lLLLTATP~QlG~e~~Fa~ 325 (955)
T PRK04914 278 DEAHHLVWSEEAPSREYQVVEQ-LAE-VIPGVLLLTATPEQLGQESHFAR 325 (955)
T ss_pred HHHHHHCCCCCCCCHHHHHHHH-HHH-HCCCEEEEECCCCCCCCHHHHHH
T ss_conf 1344530588788879999999-985-15976998479988986668988