HHsearch alignment for GI: 254781215 and conserved domain: PRK06872
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=96.48 E-value=0.063 Score=30.76 Aligned_cols=149 Identities=14% Similarity=0.125 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980899669998085899999999999999985
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
T Consensus 21 q~~v~~~l~~a~~~~r~~h-----aylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~--c~~c-----~~i~----- 83 (696)
T PRK06872 21 QEHILTALSNGLKENRLHH-----AYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGE--CENC-----KAIE----- 83 (696)
T ss_pred CHHHHHHHHHHHHCCCCCC-----EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CHHH-----HHHH-----
T ss_conf 5999999999997198630-----475117898888899999999867899999997888--6225-----7674-----
Q ss_pred CHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHH
Q ss_conf 50001344432222223334443211123578616985303575561002120267614999711102997889888888
Q gi|254781215|r 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214 (511)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~ 214 (511)
T Consensus 84 ----------------~g~~~d~~eidaas~~~--v~~~r~l~-~~-~~~~p~~~~~k-vy~idevhmls~~~fnallkt 142 (696)
T PRK06872 84 ----------------EGNFIDLIEIDAASRTK--VEDTRELL-DN-VQYKPVVGRFK-VYLIDEVHMLSRHSFNALLKT 142 (696)
T ss_pred ----------------CCCCCCEEEEECCCCCC--HHHHHHHH-HH-CCCCCCCCCEE-EEEEEHHHHCCHHHHHHHHHH
T ss_conf ----------------47877546750565578--89999999-84-54577677547-999700544389999999875
Q ss_pred HCCCCCCE-EEEEECCCCCCCCHHHHHH
Q ss_conf 50799813-8998238998765567653
Q gi|254781215|r 215 LTERNANR-FWIMTSNPRRLSGKFYEIF 241 (511)
Q Consensus 215 Lt~~g~~~-~~i~~~nP~~~~g~fy~~~ 241 (511)
T Consensus 143 leepp~~v~f~latt~~~k~p~tilsrc 170 (696)
T PRK06872 143 LEEPPEYVKFLLATTDPQKLPITILSRC 170 (696)
T ss_pred HCCCCCCEEEEEECCCHHHCCHHHHHHH
T ss_conf 0279754489984386322748898766