HHsearch alignment for GI: 254781215 and conserved domain: PRK08058
>PRK08058 DNA polymerase III subunit delta'; Validated.
Probab=96.57 E-value=0.055 Score=31.10 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC-------------------CEEEEEEC
Q ss_conf 99999999998740565554210124650257659789999999999980899-------------------66999808
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG-------------------ISVICLAN 115 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~-------------------~kv~vtAp 115 (511)
T Consensus 11 Q~~i~~~L~~~i~~~rl~H-----A~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p 85 (329)
T PRK08058 11 QPIVVKMLQNSIAKNRLAH-----AYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPDVHLVAP 85 (329)
T ss_pred HHHHHHHHHHHHHCCCCCC-----EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECC
T ss_conf 8999999999998599661-----56557899988999999999997399999999887888999987699997677456
Q ss_pred CHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEE
Q ss_conf 58999999999999999855000134443222222333444321112357861698530357556100212026761499
Q gi|254781215|r 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195 (511)
Q Consensus 116 t~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lv 195 (511)
T Consensus 86 ~~~~i~---idqiR~L~~~~-----------------------------------------------~~~p~~g~~K-V~ 114 (329)
T PRK08058 86 DGQSIK---KDQIRYLKEEF-----------------------------------------------SKSGVESNKK-VY 114 (329)
T ss_pred CCCCCC---HHHHHHHHHHH-----------------------------------------------CCCCCCCCCE-EE
T ss_conf 614077---99999999996-----------------------------------------------4387578867-99
Q ss_pred EECCHHCCCHHHHHHHHHHHCCCCCCEEEE-EECCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCC
Q ss_conf 971110299788988888850799813899-8238998765567653035247417984043367789778999997518
Q gi|254781215|r 196 INDEASGTPDVINLGILGFLTERNANRFWI-MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274 (511)
Q Consensus 196 I~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i-~~~nP~~~~g~fy~~~~~~~~~w~~~~i~~~~~p~~~~~~ie~~~~~~g 274 (511)
T Consensus 115 II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~t~~~~~lLpTI~SRC-------q~i~f-----~~~~~~~i~~~L~~~~ 182 (329)
T PRK08058 115 IIEHADKMTASAANSLLKFLEEPSGDTTAILLTENKHQILPTILSRC-------QVVEF-----RPLPPESLIQRLQEEG 182 (329)
T ss_pred EEECHHHHCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCC-------EEEEC-----CCCCHHHHHHHHHHCC
T ss_conf 97347762999999999986468978679987299666436886314-------25658-----8999999999999879
Q ss_pred CC
Q ss_conf 98
Q gi|254781215|r 275 LD 276 (511)
Q Consensus 275 ed 276 (511)
T Consensus 183 i~ 184 (329)
T PRK08058 183 IS 184 (329)
T ss_pred CC
T ss_conf 99