HHsearch alignment for GI: 254781215 and conserved domain: PRK09112
>PRK09112 DNA polymerase III subunit delta'; Validated.
Probab=95.97 E-value=0.12 Score=29.09 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EE--EEEECCHHHHHHHHHHHHHHH
Q ss_conf 999999999987405655542101246502576597899999999999808996-69--998085899999999999999
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI-SV--ICLANSETQLKTTLWAEVSKW 131 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~-kv--~vtApt~~Q~~~ilw~Ei~k~ 131 (511)
T Consensus 28 q~~~~~~L~~a~~~gRl~H-----A~Lf~GP~GiGKaTlA~~~A~~Ll~-~~~~~~~~~~~~~pd~~---~~~~r~i~-- 96 (352)
T PRK09112 28 HEEARAFLAQAYREGRLHH-----ALLFEGPEGIGKATLAFHLANHILS-HPDPNEAPETLADPDPA---SPLWRQIA-- 96 (352)
T ss_pred HHHHHHHHHHHHHCCCCCC-----EEEEECCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCC---CHHHHHHH--
T ss_conf 6999999999998499652-----4653589980899999999999866-99866686556788878---77899997--
Q ss_pred HHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHH
Q ss_conf 98550001344432222223334443211123578616985303575561002120267614999711102997889888
Q gi|254781215|r 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGI 211 (511)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i 211 (511)
T Consensus 97 -~-g~hpdl~~i~-r-----~~d~k~~~~~~~I~vd~iR~l~~~~------~~~~~~~~~k-v~Iid~ad~m~~~aaNAL 161 (352)
T PRK09112 97 -Q-GAHPNLLHLT-R-----PFDEKTGKFKTAITVDEIRRVTHFL------SQTSGDGNWR-IVIIDPADDMNRNAANAI 161 (352)
T ss_pred -C-CCCCCEEEEE-C-----CCCHHHHHHHCCCCHHHHHHHHHHH------CCCCCCCCEE-EEEECCHHHHHHHHHHHH
T ss_conf -4-8999956553-4-----3220214543357779999999984------5488668806-999818787469999999
Q ss_pred HHHHCCCCCCEEEEEE-CCCCCCCCHHHHHHHC
Q ss_conf 8885079981389982-3899876556765303
Q gi|254781215|r 212 LGFLTERNANRFWIMT-SNPRRLSGKFYEIFNK 243 (511)
Q Consensus 212 ~~~Lt~~g~~~~~i~~-~nP~~~~g~fy~~~~~ 243 (511)
T Consensus 162 LK~LEEPp~~~~fiLit~~~~~ll~TI~SRCq~ 194 (352)
T PRK09112 162 LKTLEEPPARALFILISHSSGRLLPTIRSRCQP 194 (352)
T ss_pred HHHHHCCCCCEEEEEEECCHHHCHHHHHHHCCC
T ss_conf 998534898748998869977776899974332