HHsearch alignment for GI: 254781215 and conserved domain: PRK10875
>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=98.47 E-value=7.9e-06 Score=55.36 Aligned_cols=157 Identities=21% Similarity=0.151 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE-ECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 5899999999999874056555421012465-0257659789999999999980--899669998085899999999999
Q gi|254781215|r 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEV 128 (511)
Q Consensus 52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV-~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~~ilw~Ei 128 (511)
T Consensus 149 ~dwQk~A~a~Al~-------------~~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaAPTGKAAaRL~-Esi 214 (607)
T PRK10875 149 VNWQKVAAAVALT-------------RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT-ESL 214 (607)
T ss_pred CCHHHHHHHHHHH-------------CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHH-HHH
T ss_conf 5189999999875-------------57789967999877889999999999964589970899882289999999-999
Q ss_pred HHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHH
Q ss_conf 99998550001344432222223334443211123578616985303575561002120267614999711102997889
Q gi|254781215|r 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208 (511)
Q Consensus 129 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~ 208 (511)
T Consensus 215 ~~~~~~l~~~~~~------~~~~p~~a~TiHRLLg~~p~~~---~f~~~~~nP--------L~~DvlIVDEASMVDl~Lm 277 (607)
T PRK10875 215 GKALRQLPLTDEQ------KKRIPEDASTLHRLLGAQPGSQ---RLRYHAGNP--------LHLDVLVVDEASMIDLPMM 277 (607)
T ss_pred HHHHHHCCCCHHH------HHCCCCCCEEHHHHCCCCCCCC---CCCCCCCCC--------CCCCEEEEECCHHHHHHHH
T ss_conf 8787534766566------6337655665897529678987---656577999--------9889899907336659999
Q ss_pred HHHHHHHCCCCCCEEEEEECCC-----CCCCCHHHHHHH
Q ss_conf 8888885079981389982389-----987655676530
Q gi|254781215|r 209 LGILGFLTERNANRFWIMTSNP-----RRLSGKFYEIFN 242 (511)
Q Consensus 209 e~i~~~Lt~~g~~~~~i~~~nP-----~~~~g~fy~~~~ 242 (511)
T Consensus 278 ~~LL~Alp~-~aR--LILvGD~dQLpSVgaGaVL~DL~~ 313 (607)
T PRK10875 278 SRLIDALPD-HAR--VIFLGDRDQLASVEAGAVLGDICA 313 (607)
T ss_pred HHHHHHCCC-CCE--EEEECCHHHCCCCCCCCCHHHHHH
T ss_conf 999982899-988--999656232478888821799998