HHsearch alignment for GI: 254781215 and conserved domain: PRK11776

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=97.31  E-value=0.0036  Score=38.60  Aligned_cols=77  Identities=16%  Similarity=0.148  Sum_probs=56.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHH
Q ss_conf             55578458999999999998740565554210124650257659789999999999980-89966999808589999999
Q gi|254781215|r   46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTL  124 (511)
Q Consensus        46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~il  124 (511)
T Consensus        22 ~G~~~pTpIQ~~aIP~il~G~------------Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~PTRELa~QV-   88 (459)
T PRK11776         22 LGYTEMTPIQAQSLPAILAGK------------DVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQV-   88 (459)
T ss_pred             CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHH-
T ss_conf             799999989999999997799------------8899889985899999999998411367898599996759999999-


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999855
Q gi|254781215|r  125 WAEVSKWLSLL  135 (511)
Q Consensus       125 w~Ei~k~~~~~  135 (511)
T Consensus        89 ~~~~~~l~~~~   99 (459)
T PRK11776         89 AKEIRRLARFI   99 (459)
T ss_pred             HHHHHHHHHHC
T ss_conf             99999998505