HHsearch alignment for GI: 254781215 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=97.31 E-value=0.0036 Score=38.60 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHH
Q ss_conf 55578458999999999998740565554210124650257659789999999999980-89966999808589999999
Q gi|254781215|r 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTL 124 (511)
Q Consensus 46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-~p~~kv~vtApt~~Q~~~il 124 (511)
T Consensus 22 ~G~~~pTpIQ~~aIP~il~G~------------Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~PTRELa~QV- 88 (459)
T PRK11776 22 LGYTEMTPIQAQSLPAILAGK------------DVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQV- 88 (459)
T ss_pred CCCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHH-
T ss_conf 799999989999999997799------------8899889985899999999998411367898599996759999999-
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999855
Q gi|254781215|r 125 WAEVSKWLSLL 135 (511)
Q Consensus 125 w~Ei~k~~~~~ 135 (511)
T Consensus 89 ~~~~~~l~~~~ 99 (459)
T PRK11776 89 AKEIRRLARFI 99 (459)
T ss_pred HHHHHHHHHHC
T ss_conf 99999998505