HHsearch alignment for GI: 254781215 and conserved domain: PRK12402

>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=96.75  E-value=0.038  Score=32.11  Aligned_cols=165  Identities=16%  Similarity=0.078  Sum_probs=75.2

Q ss_pred             CCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             1455777--56555784589999999999987405655542101246502576597899999999999808996699980
Q gi|254781215|r   37 PWGEKGT--PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA  114 (511)
Q Consensus        37 ~w~~~~~--~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA  114 (511)
T Consensus         4 lWveKYRP~~~~dvvG----q~~i~~~L~~~~~~~~---~ph---lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~n   73 (337)
T PRK12402          4 LWTEKYRPSLFEDILG----QESVVDHLSALAASGN---LPH---LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFN   73 (337)
T ss_pred             CCCCCCCCCCHHHHCC----CHHHHHHHHHHHHCCC---CCE---EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEC
T ss_conf             5321418897998039----7999999999997799---876---98889298489999999999967997567833311


Q ss_pred             CCH--HHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCC
Q ss_conf             858--999999999999999855000134443222222333444321112357861698530357556100212026761
Q gi|254781215|r  115 NSE--TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG  192 (511)
Q Consensus       115 pt~--~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~  192 (511)
T Consensus        74 asd~~~~~~~----~i~~---~~~~~~--------~~~~~~~~~----------~~~~d~i~~ii~-~~a~~~p~~~~~-  126 (337)
T PRK12402         74 VSDFFDQGKK----YLVE---DPRFAH--------FYDDPKRKY----------KSVIDNFKHILK-EYASMRPLSADY-  126 (337)
T ss_pred             CCCCCCCCCC----EEEC---CCCHHH--------HHCCHHHCC----------CCHHHHHHHHHH-HHHCCCCCCCCE-
T ss_conf             6531135640----0101---664234--------420153327----------737899999999-986148877880-


Q ss_pred             EEEEECCHHCCCHHHHHHHHHHHCCCCCCEE-EEEECCCCCCCCHHH
Q ss_conf             4999711102997889888888507998138-998238998765567
Q gi|254781215|r  193 MAIINDEASGTPDVINLGILGFLTERNANRF-WIMTSNPRRLSGKFY  238 (511)
Q Consensus       193 ~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~-~i~~~nP~~~~g~fy  238 (511)
T Consensus       127 KiiIlDEad~lt~~Aq~aLlk~lEe~~~~~~fIl~t~~~~~ii~tI~  173 (337)
T PRK12402        127 KLILFDNAEALREDAQQALRRIMERYSETCRFIFSTTQPSKLIPPIR  173 (337)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHH
T ss_conf             49997071317999999999887408876699872386444752477