HHsearch alignment for GI: 254781215 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=96.75 E-value=0.038 Score=32.11 Aligned_cols=165 Identities=16% Similarity=0.078 Sum_probs=75.2
Q ss_pred CCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 1455777--56555784589999999999987405655542101246502576597899999999999808996699980
Q gi|254781215|r 37 PWGEKGT--PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 37 ~w~~~~~--~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
T Consensus 4 lWveKYRP~~~~dvvG----q~~i~~~L~~~~~~~~---~ph---lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~n 73 (337)
T PRK12402 4 LWTEKYRPSLFEDILG----QESVVDHLSALAASGN---LPH---LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFN 73 (337)
T ss_pred CCCCCCCCCCHHHHCC----CHHHHHHHHHHHHCCC---CCE---EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEC
T ss_conf 5321418897998039----7999999999997799---876---98889298489999999999967997567833311
Q ss_pred CCH--HHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCC
Q ss_conf 858--999999999999999855000134443222222333444321112357861698530357556100212026761
Q gi|254781215|r 115 NSE--TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192 (511)
Q Consensus 115 pt~--~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~ 192 (511)
T Consensus 74 asd~~~~~~~----~i~~---~~~~~~--------~~~~~~~~~----------~~~~d~i~~ii~-~~a~~~p~~~~~- 126 (337)
T PRK12402 74 VSDFFDQGKK----YLVE---DPRFAH--------FYDDPKRKY----------KSVIDNFKHILK-EYASMRPLSADY- 126 (337)
T ss_pred CCCCCCCCCC----EEEC---CCCHHH--------HHCCHHHCC----------CCHHHHHHHHHH-HHHCCCCCCCCE-
T ss_conf 6531135640----0101---664234--------420153327----------737899999999-986148877880-
Q ss_pred EEEEECCHHCCCHHHHHHHHHHHCCCCCCEE-EEEECCCCCCCCHHH
Q ss_conf 4999711102997889888888507998138-998238998765567
Q gi|254781215|r 193 MAIINDEASGTPDVINLGILGFLTERNANRF-WIMTSNPRRLSGKFY 238 (511)
Q Consensus 193 ~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~-~i~~~nP~~~~g~fy 238 (511)
T Consensus 127 KiiIlDEad~lt~~Aq~aLlk~lEe~~~~~~fIl~t~~~~~ii~tI~ 173 (337)
T PRK12402 127 KLILFDNAEALREDAQQALRRIMERYSETCRFIFSTTQPSKLIPPIR 173 (337)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHH
T ss_conf 49997071317999999999887408876699872386444752477