HHsearch alignment for GI: 254781215 and conserved domain: PRK13709
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional.
Probab=93.50 E-value=0.52 Score=24.97 Aligned_cols=159 Identities=14% Similarity=0.080 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 67888999870706665288667764214557775655578458999999999998740565554210124650257659
Q gi|254781215|r 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89 (511)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~G 89 (511)
T Consensus 938 etEK~IL~~i~~GK~tv~PL~~~-------v~~s~l~~LT---~GQK~At~LIltT~------DR----FvaIQGyAGVG 997 (1756)
T PRK13709 938 EAEKSILRHILEGKEAVTPLMER-------VPGELMEKLT---SGQRAATRMILETS------DR----FTVVQGYAGVG 997 (1756)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHH-------CCHHHHCCCC---HHHHHHHHHHHCCC------CC----EEEEEECCCCC
T ss_conf 99999999997476656860232-------7556663578---57787775632478------72----59987035566
Q ss_pred HHHHHHHHH-HHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 789999999-999980-899669998085899999999999999985500013444322222233344432111235786
Q gi|254781215|r 90 KTTLNAWLV-LWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167 (511)
Q Consensus 90 KS~l~a~l~-lw~l~~-~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (511)
T Consensus 998 KTTql~avi~ai~tl~~~~rpqViGLAPTH~AV~-----EL~~---~-----GV~AQTlaSfL----~d~~~-------- 1052 (1756)
T PRK13709 998 KTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG-----EMRS---A-----GVDAQTLASFL----HDTQL-------- 1052 (1756)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHH-----HHHH---C-----CCCHHHHHHHH----HHHHH--------
T ss_conf 6778999999997255135872675675178999-----9996---4-----96078999998----62023--------
Q ss_pred EEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 1698530357556100212026761499971110299788988888850799813899823
Q gi|254781215|r 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228 (511)
Q Consensus 168 ~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~ 228 (511)
T Consensus 1053 ------~~~~---ge~~d--y--~nTLFllDESSMVgN~dma~~~~lV~asggRA--V~~G 1098 (1756)
T PRK13709 1053 ------QQRS---GETPD--F--SNTLFLLDESSMVGNTDMARAYALIAAGGGRA--VASG 1098 (1756)
T ss_pred ------HHHC---CCCCC--C--CCEEEEEEHHHCCCHHHHHHHHHHHHHCCCCE--EEEC
T ss_conf ------4414---89876--5--54289983043147088999999997059837--9727