HHsearch alignment for GI: 254781215 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=98.30 E-value=2.3e-05 Score=52.48 Aligned_cols=169 Identities=12% Similarity=0.060 Sum_probs=81.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf 57775655578458999999999998740565554210124650257659789999999999980899669998085899
Q gi|254781215|r 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119 (511)
Q Consensus 40 ~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q 119 (511)
T Consensus 5 ~h~~~~p~~ie~R~YQ~el~~~Al~---~N----------tiVvLPTG~GKT~IA~lvi~~~l~-~~~gKilFLaPT~pL 70 (764)
T PRK13766 5 SHPLIKPNTIEARLYQQLLAAKALK---GN----------TLVVLPTGLGKTAIALLVIAERLQ-KYGGKVLILAPTKPL 70 (764)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH---CC----------EEEEECCCCCHHHHHHHHHHHHHH-HCCCEEEEECCCHHH
T ss_conf 6776586877653879999999985---89----------899959986689999999999997-489889998588889
Q ss_pred HHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECC
Q ss_conf 99999999999998550001344432222223334443211123578616985303575561002120267614999711
Q gi|254781215|r 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199 (511)
Q Consensus 120 ~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DE 199 (511)
T Consensus 71 V~Qq~-~~~~~~l~-i~~~-~i~~ltG~~~~~------~r~~~w~~~~Viv~TPQvl~ndL~~g--~i~l~dv~lLVfDE 139 (764)
T PRK13766 71 VEQHA-EFFRKFLN-IDPE-KIVVLTGEISPE------KRAALWEKAKVIVATPQVIENDLLAG--RISLEDVSLLIFDE 139 (764)
T ss_pred HHHHH-HHHHHHCC-CCCC-EEEEEECCCCHH------HHHHHHCCCCEEEECCHHHHHHHHHC--CCCHHHCCEEEEEC
T ss_conf 99999-99999709-9955-289998887827------68998607999999908999999829--86788822899974
Q ss_pred HHCC-CHHHH-HHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf 1029-97889-8888885079981389982389987
Q gi|254781215|r 200 ASGT-PDVIN-LGILGFLTERNANRFWIMTSNPRRL 233 (511)
Q Consensus 200 AsgI-~d~i~-e~i~~~Lt~~g~~~~~i~~~nP~~~ 233 (511)
T Consensus 140 aHha~Gnh~Y~~I~~~y~~~~~~PrILGLTASPGs~ 175 (764)
T PRK13766 140 AHRAVGNYAYVFIAERYHEDAKNPLVLGLTASPGSD 175 (764)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 666667762899999998537785588503688764