HHsearch alignment for GI: 254781215 and conserved domain: PRK13766

>PRK13766 Hef nuclease; Provisional.
Probab=98.30  E-value=2.3e-05  Score=52.48  Aligned_cols=169  Identities=12%  Similarity=0.060  Sum_probs=81.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Q ss_conf             57775655578458999999999998740565554210124650257659789999999999980899669998085899
Q gi|254781215|r   40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ  119 (511)
Q Consensus        40 ~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q  119 (511)
T Consensus         5 ~h~~~~p~~ie~R~YQ~el~~~Al~---~N----------tiVvLPTG~GKT~IA~lvi~~~l~-~~~gKilFLaPT~pL   70 (764)
T PRK13766          5 SHPLIKPNTIEARLYQQLLAAKALK---GN----------TLVVLPTGLGKTAIALLVIAERLQ-KYGGKVLILAPTKPL   70 (764)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHH---CC----------EEEEECCCCCHHHHHHHHHHHHHH-HCCCEEEEECCCHHH
T ss_conf             6776586877653879999999985---89----------899959986689999999999997-489889998588889


Q ss_pred             HHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECC
Q ss_conf             99999999999998550001344432222223334443211123578616985303575561002120267614999711
Q gi|254781215|r  120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE  199 (511)
Q Consensus       120 ~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DE  199 (511)
T Consensus        71 V~Qq~-~~~~~~l~-i~~~-~i~~ltG~~~~~------~r~~~w~~~~Viv~TPQvl~ndL~~g--~i~l~dv~lLVfDE  139 (764)
T PRK13766         71 VEQHA-EFFRKFLN-IDPE-KIVVLTGEISPE------KRAALWEKAKVIVATPQVIENDLLAG--RISLEDVSLLIFDE  139 (764)
T ss_pred             HHHHH-HHHHHHCC-CCCC-EEEEEECCCCHH------HHHHHHCCCCEEEECCHHHHHHHHHC--CCCHHHCCEEEEEC
T ss_conf             99999-99999709-9955-289998887827------68998607999999908999999829--86788822899974


Q ss_pred             HHCC-CHHHH-HHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf             1029-97889-8888885079981389982389987
Q gi|254781215|r  200 ASGT-PDVIN-LGILGFLTERNANRFWIMTSNPRRL  233 (511)
Q Consensus       200 AsgI-~d~i~-e~i~~~Lt~~g~~~~~i~~~nP~~~  233 (511)
T Consensus       140 aHha~Gnh~Y~~I~~~y~~~~~~PrILGLTASPGs~  175 (764)
T PRK13766        140 AHRAVGNYAYVFIAERYHEDAKNPLVLGLTASPGSD  175 (764)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf             666667762899999998537785588503688764