HHsearch alignment for GI: 254781215 and conserved domain: TIGR00635
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=92.26 E-value=0.56 Score=24.76 Aligned_cols=104 Identities=15% Similarity=0.063 Sum_probs=70.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCC--CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-ECCHHHH
Q ss_conf 56555784589999999999987405655--54210124650257659789999999999980899669998-0858999
Q gi|254781215|r 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNN--PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL-ANSETQL 120 (511)
Q Consensus 44 ~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~--~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vt-Apt~~Q~ 120 (511)
T Consensus 2 ~L~eFiG----Q~~vk~~L~l~I~AAk~R~e~LD---H~LL~GPPGLGKTTLA~IiA~E-----mg~~l~iTsGP~L~kP 69 (305)
T TIGR00635 2 LLAEFIG----QEKVKEQLQLFIEAAKMRQEALD---HLLLYGPPGLGKTTLAHIIANE-----MGVNLKITSGPALEKP 69 (305)
T ss_pred CCHHCCC----CHHHHHHHHHHHHHHHHCCCCCC---CEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEECCCCCCH
T ss_conf 8011058----28899999999999982489734---1663175687467899999998-----3893267406755475
Q ss_pred HHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCH
Q ss_conf 99999999999985500013444322222233344432111235786169853035755610021202676149997111
Q gi|254781215|r 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200 (511)
Q Consensus 121 ~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEA 200 (511)
T Consensus 70 gDla-aiL--------------------------------------------------------t~L~-~gDVLFI-DEI 90 (305)
T TIGR00635 70 GDLA-AIL--------------------------------------------------------TNLE-EGDVLFI-DEI 90 (305)
T ss_pred HHHH-HHH--------------------------------------------------------HHCC-CCCEEEC-CHH
T ss_conf 7899-999--------------------------------------------------------7056-8963101-256
Q ss_pred HCCCHHHHHHHHHHHCCC
Q ss_conf 029978898888885079
Q gi|254781215|r 201 SGTPDVINLGILGFLTER 218 (511)
Q Consensus 201 sgI~d~i~e~i~~~Lt~~ 218 (511)
T Consensus 91 HRL~p~~EE~LYpAMEDF 108 (305)
T TIGR00635 91 HRLSPAIEELLYPAMEDF 108 (305)
T ss_pred HHCCHHHHHHCCCCCCCE
T ss_conf 504833453105300121