>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .

Probab=98.29 E-value=7.7e-06 Score=55.42 Aligned_cols=136 Identities=18% Similarity=0.174 Sum_probs=86.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHC-----------CCCEEEEEECCHHH Q ss_conf 589999999999987405655542101246502-576597899999999999808-----------99669998085899 Q gi|254781215|r 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTR-----------PGISVICLANSETQ 119 (511) Q Consensus 52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~s-grG~GKS~l~a~l~lw~l~~~-----------p~~kv~vtApt~~Q 119 (511) T Consensus 352 ~~~Qk~AL~~~~~~-------------Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrA 418 (769) T TIGR01448 352 SEEQKEALKTAIQD-------------KVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRA 418 (769) T ss_pred HHHHHHHHHHHHCC-------------CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHH T ss_conf 68899999998609-------------48998577888616899999999987168775531245677648873774378 Q ss_pred HHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHH-CCCC--CCEEEE Q ss_conf 9999999999999855000134443222222333444321112357861698530357556100212-0267--614999 Q gi|254781215|r 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG-HHNT--YGMAII 196 (511) Q Consensus 120 ~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G-~h~~--~~~lvI 196 (511) T Consensus 419 AkRl--~E~TG~~a~TIHR-----------LlG~~~~-------------------------~~~~~k~~~~~~~~DL~I 460 (769) T TIGR01448 419 AKRL--AEVTGLEALTIHR-----------LLGYGSD-------------------------TKSENKNLEDPIDADLLI 460 (769) T ss_pred HHHC--CCCCCCHHHHHHH-----------HHCCCCC-------------------------CCCCCHHHCCCCCCCEEE T ss_conf 8851--1002621234778-----------6368988-------------------------873211011347877699 Q ss_pred ECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECC-----CCCCCCHHHHHH Q ss_conf 711102997889888888507998138998238-----998765567653 Q gi|254781215|r 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSN-----PRRLSGKFYEIF 241 (511) Q Consensus 197 ~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~n-----P~~~~g~fy~~~ 241 (511) T Consensus 461 vDE~SM~Dt~L~~~lL~a~P~-~a~--lllVGD~DQLPSV~pG~VL~DLi 507 (769) T TIGR01448 461 VDESSMVDTWLASSLLAAVPD-HAR--LLLVGDADQLPSVGPGQVLKDLI 507 (769) T ss_pred EECCCHHHHHHHHHHHHHCCC-CCE--EEEECCCCCCCCCCCCHHHHHHH T ss_conf 814621889999999861797-777--98883768889886440899998

HHsearch alignment for GI: 254781215 and conserved domain: TIGR01448