HHsearch alignment for GI: 254781215 and conserved domain: TIGR01547
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family; InterPro: IPR006437 This group of sequences represent a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from the phage terminase family represented by IPR005021 from INTERPRO.; GO: 0006323 DNA packaging.
Probab=98.91 E-value=5.7e-07 Score=62.55 Aligned_cols=246 Identities=16% Similarity=0.157 Sum_probs=165.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHC-CCCCCCCCCCCCCCCC
Q ss_conf 6502576597899999999999808-----996699980858999999999999999855000-1344432222223334
Q gi|254781215|r 81 AISAGRGIGKTTLNAWLVLWLMSTR-----PGISVICLANSETQLKTTLWAEVSKWLSLLPNK-HWFEMQSLSLHPAPWY 154 (511)
Q Consensus 81 aV~sgrG~GKS~l~a~l~lw~l~~~-----p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (511)
T Consensus 5 ~~~G~~~sgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~------ 78 (462)
T TIGR01547 5 IAKGGRGSGKTFAIALKLVLKLLANKDLYGKPRNILAARKVQNSIRDSVFKDIEDLLSDLGLNLYEFKKSKSPM------ 78 (462)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC------
T ss_conf 63266653157899999999998764531488406887402335665668889999987064022132036662------
Q ss_pred CCCCCCCCCCCC-CEEEEEECCCCCCCCCHHHHCCCCC--------CEEEEECCHHCCCHHHHHHHHHHHCCCCCC-EEE
Q ss_conf 443211123578-6169853035755610021202676--------149997111029978898888885079981-389
Q gi|254781215|r 155 SDVLHCSLGIDS-KHYSTMCRTYSEERPDTFVGHHNTY--------GMAIINDEASGTPDVINLGILGFLTERNAN-RFW 224 (511)
Q Consensus 155 ~~~~~~~~~~~~-~~~~~~~~~~s~~~~ea~~G~h~~~--------~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~-~~~ 224 (511)
T Consensus 79 ----~~~~~~~~~~~~~~f-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~r~~~~~~~~~ 153 (462)
T TIGR01547 79 ----EIKILNTGGGAYFIF-KGLNSDKPEKLKSGAGLGFTLWEVGLLADLWFEEASELTKEDIKELIPRLREPGGKNKFI 153 (462)
T ss_pred ----EEEECCCCCCEEEEE-ECCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf ----577615788617996-065756246643104664100014455656555444301446888887640577750699
Q ss_pred EEECCCCCCCCHHHHHHHCC--CC--CCE---------------EEEECCCCCCCCC----HHHHHHHHHHCCCCHHHHH
Q ss_conf 98238998765567653035--24--741---------------7984043367789----7789999975189801354
Q gi|254781215|r 225 IMTSNPRRLSGKFYEIFNKP--LD--DWK---------------RFQIDTRTVEGID----PSFHEGIIARYGLDSDVTR 281 (511)
Q Consensus 225 i~~~nP~~~~g~fy~~~~~~--~~--~w~---------------~~~i~~~~~p~~~----~~~ie~~~~~~geds~~~r 281 (511)
T Consensus 154 ~~~~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (462)
T TIGR01547 154 IFSSNPESPLHWVYKDFIENLGEDEFRICDKPPYEYGVVDKKLYILHSTYRDNPFLSGGDVEEYIQELEKLKDRDPALYR 233 (462)
T ss_pred EEEECCCCCCCHHHHHHHHCCCCCCHHHHCCCCHHHHHEEECEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98408898553056665430477601221011013220000002567420346567611589999999986315613433
Q ss_pred HHHCCCCCCCCCCEEECHHHHH------HHHHC---CCCCCCCCEE--EEEEECCCC-CCCCEEEEEE
Q ss_conf 4431756666787375599998------86407---6531899708--999623334-7841799982
Q gi|254781215|r 282 VEVCGQFPQQDIDSFIPLNIIE------EALNR---EPCPDPYAPL--IMGCDIAEE-GGDNTVVVLR 337 (511)
Q Consensus 282 ~evlgeFp~~~~~~~i~~~~ie------~a~~r---~~~~~~~~~~--viGvDVAr~-G~D~svi~~r 337 (511)
T Consensus 234 ~~~~G~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 301 (462)
T TIGR01547 234 RILLGEWVSAADVWSLGLPVLTSEGILFKKLDVKAAYIKELPNDPSDFVGGIDAGGVDGNSPSAYVLL 301 (462)
T ss_pred HHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCEEEEEE
T ss_conf 44423510122332204444344411121110022123431232100013201476666530367887