HHsearch alignment for GI: 254781215 and conserved domain: TIGR01547

>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family; InterPro: IPR006437 This group of sequences represent a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from the phage terminase family represented by IPR005021 from INTERPRO.; GO: 0006323 DNA packaging.
Probab=98.91  E-value=5.7e-07  Score=62.55  Aligned_cols=246  Identities=16%  Similarity=0.157  Sum_probs=165.1

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHC-CCCCCCCCCCCCCCCC
Q ss_conf             6502576597899999999999808-----996699980858999999999999999855000-1344432222223334
Q gi|254781215|r   81 AISAGRGIGKTTLNAWLVLWLMSTR-----PGISVICLANSETQLKTTLWAEVSKWLSLLPNK-HWFEMQSLSLHPAPWY  154 (511)
Q Consensus        81 aV~sgrG~GKS~l~a~l~lw~l~~~-----p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~-~~~~~~~~~~~~~~~~  154 (511)
T Consensus         5 ~~~G~~~sgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~------   78 (462)
T TIGR01547         5 IAKGGRGSGKTFAIALKLVLKLLANKDLYGKPRNILAARKVQNSIRDSVFKDIEDLLSDLGLNLYEFKKSKSPM------   78 (462)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC------
T ss_conf             63266653157899999999998764531488406887402335665668889999987064022132036662------


Q ss_pred             CCCCCCCCCCCC-CEEEEEECCCCCCCCCHHHHCCCCC--------CEEEEECCHHCCCHHHHHHHHHHHCCCCCC-EEE
Q ss_conf             443211123578-6169853035755610021202676--------149997111029978898888885079981-389
Q gi|254781215|r  155 SDVLHCSLGIDS-KHYSTMCRTYSEERPDTFVGHHNTY--------GMAIINDEASGTPDVINLGILGFLTERNAN-RFW  224 (511)
Q Consensus       155 ~~~~~~~~~~~~-~~~~~~~~~~s~~~~ea~~G~h~~~--------~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~-~~~  224 (511)
T Consensus        79 ----~~~~~~~~~~~~~~f-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~r~~~~~~~~~  153 (462)
T TIGR01547        79 ----EIKILNTGGGAYFIF-KGLNSDKPEKLKSGAGLGFTLWEVGLLADLWFEEASELTKEDIKELIPRLREPGGKNKFI  153 (462)
T ss_pred             ----EEEECCCCCCEEEEE-ECCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf             ----577615788617996-065756246643104664100014455656555444301446888887640577750699


Q ss_pred             EEECCCCCCCCHHHHHHHCC--CC--CCE---------------EEEECCCCCCCCC----HHHHHHHHHHCCCCHHHHH
Q ss_conf             98238998765567653035--24--741---------------7984043367789----7789999975189801354
Q gi|254781215|r  225 IMTSNPRRLSGKFYEIFNKP--LD--DWK---------------RFQIDTRTVEGID----PSFHEGIIARYGLDSDVTR  281 (511)
Q Consensus       225 i~~~nP~~~~g~fy~~~~~~--~~--~w~---------------~~~i~~~~~p~~~----~~~ie~~~~~~geds~~~r  281 (511)
T Consensus       154 ~~~~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dn~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (462)
T TIGR01547       154 IFSSNPESPLHWVYKDFIENLGEDEFRICDKPPYEYGVVDKKLYILHSTYRDNPFLSGGDVEEYIQELEKLKDRDPALYR  233 (462)
T ss_pred             EEEECCCCCCCHHHHHHHHCCCCCCHHHHCCCCHHHHHEEECEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             98408898553056665430477601221011013220000002567420346567611589999999986315613433


Q ss_pred             HHHCCCCCCCCCCEEECHHHHH------HHHHC---CCCCCCCCEE--EEEEECCCC-CCCCEEEEEE
Q ss_conf             4431756666787375599998------86407---6531899708--999623334-7841799982
Q gi|254781215|r  282 VEVCGQFPQQDIDSFIPLNIIE------EALNR---EPCPDPYAPL--IMGCDIAEE-GGDNTVVVLR  337 (511)
Q Consensus       282 ~evlgeFp~~~~~~~i~~~~ie------~a~~r---~~~~~~~~~~--viGvDVAr~-G~D~svi~~r  337 (511)
T Consensus       234 ~~~~G~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  301 (462)
T TIGR01547       234 RILLGEWVSAADVWSLGLPVLTSEGILFKKLDVKAAYIKELPNDPSDFVGGIDAGGVDGNSPSAYVLL  301 (462)
T ss_pred             HHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCEEEEEE
T ss_conf             44423510122332204444344411121110022123431232100013201476666530367887