>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.

Probab=96.33 E-value=0.02 Score=33.92 Aligned_cols=200 Identities=15% Similarity=0.149 Sum_probs=100.8 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC------CEEEEEECCHH Q ss_conf 655578458999999999998740565554210124650257659789999999999980899------66999808589 Q gi|254781215|r 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSET 118 (511) Q Consensus 45 ~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~------~kv~vtApt~~ 118 (511) T Consensus 13 F~d~~G----Q~~iv~tL~NAi~~~ri~H-----AYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~i~~g 82 (363) T TIGR02397 13 FEDVIG----QEHIVKTLKNAIKNGRIAH-----AYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKEINSG 82 (363) T ss_pred CCCCCC----CHHHHHHHHHHHHHCCCCC-----EEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHCC T ss_conf 110235----1799999999997189662-----34502859976355899999986588-7877877775022776528 Q ss_pred HHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEEC Q ss_conf 99999999999999855000134443222222333444321112357861698530357556100212026761499971 Q gi|254781215|r 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198 (511) Q Consensus 119 Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~D 198 (511) T Consensus 83 ~~~Dvi----------------------------------EiDAASN~g--VD~IR~l~e--~v~y~P~~~kYKv-YIID 123 (363) T TIGR02397 83 SSLDVI----------------------------------EIDAASNNG--VDDIRELRE--NVKYAPSKGKYKV-YIID 123 (363) T ss_pred CCCCEE----------------------------------EECCCCCCC--HHHHHHHHH--HHCCCCCCCCCCE-EEEE T ss_conf 986668----------------------------------864865687--889999987--3036875544335-8873 Q ss_pred CHHCCCHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHH----HHHHHC Q ss_conf 11029978898888885079981-3899823899876556765303524741798404336778977899----999751 Q gi|254781215|r 199 EASGTPDVINLGILGFLTERNAN-RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE----GIIARY 273 (511) Q Consensus 199 EAsgI~d~i~e~i~~~Lt~~g~~-~~~i~~~nP~~~~g~fy~~~~~~~~~w~~~~i~~~~~p~~~~~~ie----~~~~~~ 273 (511) T Consensus 124 EVHMLS~~AFNALLKTLEEPP~hV~FIlATTE~~KiP~TIlSRCQr---------F---~Fk~i~~~~i~~~L~~I~~~E 191 (363) T TIGR02397 124 EVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQR---------F---DFKRIPLEDIVERLKKILDKE 191 (363) T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCEEECEE---------E---CCCCCCHHHHHHHHHHHHHHH T ss_conf 2302865689998765227987628887348711205540210003---------1---267899899999999999870 Q ss_pred CCCHHHHHHHHCCCCCCCCCCEEEC-HHHHHHHHHC Q ss_conf 8980135444317566667873755-9999886407 Q gi|254781215|r 274 GLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNR 308 (511) Q Consensus 274 geds~~~r~evlgeFp~~~~~~~i~-~~~ie~a~~r 308 (511) T Consensus 192 ~I~---~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~ 224 (363) T TIGR02397 192 GIK---IEDEALELIARAADGSMRDALSLLDQAISF 224 (363) T ss_pred CCC---CCHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 883---177899999996289610688999999982

HHsearch alignment for GI: 254781215 and conserved domain: TIGR02397