HHsearch alignment for GI: 254781215 and conserved domain: TIGR02621

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=95.83  E-value=0.015  Score=34.64  Aligned_cols=84  Identities=25%  Similarity=0.303  Sum_probs=49.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHH-HHHHHHHHHHHHHC-----------CCCEEE
Q ss_conf             565557845899999999999874056555421012465025765978-99999999999808-----------996699
Q gi|254781215|r   44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTR-----------PGISVI  111 (511)
Q Consensus        44 ~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS-~l~a~l~lw~l~~~-----------p~~kv~  111 (511)
T Consensus        10 ~~~G~~GPfpwQ~~L~~r~~~G-------~~P~----~~s~PTg~GKTlavi~~WlyAl~~~a~~~Grrr~~~~vP~RL~   78 (975)
T TIGR02621        10 ELTGYSGPFPWQLRLAERFVAG-------EPPE----SCSVPTGLGKTLAVIAVWLYALAIDAEQVGRRRRRRKVPRRLV   78 (975)
T ss_pred             HHCCCCCCCHHHHHHHHHHHCC-------CCCC----CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEE
T ss_conf             7358988865899999998548-------9887----6678753236899999999998740003673242133683137


Q ss_pred             EEECCHHHHHHHHHHHHHHHHHHCHHCC
Q ss_conf             9808589999999999999998550001
Q gi|254781215|r  112 CLANSETQLKTTLWAEVSKWLSLLPNKH  139 (511)
Q Consensus       112 vtApt~~Q~~~ilw~Ei~k~~~~~~~~~  139 (511)
T Consensus        79 yvVd-RR~vVD~~te~a~~i~~aL~~~p  105 (975)
T TIGR02621        79 YVVD-RRTVVDQSTEEAEKIREALGEAP  105 (975)
T ss_pred             EEEE-CCEEECCHHHHHHHHHHHCCCCC
T ss_conf             8871-42453432789999998546888