HHsearch alignment for GI: 254781215 and conserved domain: TIGR03117
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.79 E-value=0.46 Score=25.29 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=33.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 65025765978999999999998089966999808589999999
Q gi|254781215|r 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124 (511)
Q Consensus 81 aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~il 124 (511)
T Consensus 20 lVEAGTGTGKSLAYLvPAl~~a~~~~g~rVVISTaT~aLQeQL~ 63 (636)
T TIGR03117 20 MLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLW 63 (636)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
T ss_conf 99899971088999999999998579998899798799999997