HHsearch alignment for GI: 254781215 and conserved domain: TIGR03158

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=93.99  E-value=0.43  Score=25.51  Aligned_cols=65  Identities=15%  Similarity=0.137  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999998740565554210124650257659789999999999980899669998085899999999999999985
Q gi|254781215|r   55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL  134 (511)
Q Consensus        55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~  134 (511)
T Consensus         2 q~~~~~~~~~~~-----~~-----~ivitAPTgsGKT~Aa~lp~l-----~~~~~~lyi~P~kAL~~Dq-~~~l~~~~~~   65 (357)
T TIGR03158         2 QVATFEALQSKD-----AD-----IIFNTAPTGAGKTLAWLTPLL-----HGENDTIALYPTNALIEDQ-TEAIKEFVDV   65 (357)
T ss_pred             HHHHHHHHHCCC-----CC-----EEEEECCCCCCHHHHHHHHHH-----HCCCCEEEECCHHHHHHHH-HHHHHHHHHH
T ss_conf             689999997689-----98-----699989998569999999997-----3898799977789999999-9999999987


Q ss_pred             C
Q ss_conf             5
Q gi|254781215|r  135 L  135 (511)
Q Consensus       135 ~  135 (511)
T Consensus        66 ~   66 (357)
T TIGR03158        66 F   66 (357)
T ss_pred             H
T ss_conf             4