HHsearch alignment for GI: 254781215 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=93.99 E-value=0.43 Score=25.51 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998740565554210124650257659789999999999980899669998085899999999999999985
Q gi|254781215|r 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134 (511)
Q Consensus 55 Q~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~ 134 (511)
T Consensus 2 q~~~~~~~~~~~-----~~-----~ivitAPTgsGKT~Aa~lp~l-----~~~~~~lyi~P~kAL~~Dq-~~~l~~~~~~ 65 (357)
T TIGR03158 2 QVATFEALQSKD-----AD-----IIFNTAPTGAGKTLAWLTPLL-----HGENDTIALYPTNALIEDQ-TEAIKEFVDV 65 (357)
T ss_pred HHHHHHHHHCCC-----CC-----EEEEECCCCCCHHHHHHHHHH-----HCCCCEEEECCHHHHHHHH-HHHHHHHHHH
T ss_conf 689999997689-----98-----699989998569999999997-----3898799977789999999-9999999987
Q ss_pred C
Q ss_conf 5
Q gi|254781215|r 135 L 135 (511)
Q Consensus 135 ~ 135 (511)
T Consensus 66 ~ 66 (357)
T TIGR03158 66 F 66 (357)
T ss_pred H
T ss_conf 4