HHsearch alignment for GI: 254781215 and conserved domain: TIGR03499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.74 E-value=0.056 Score=31.06 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHCCCC---EEEEEECCCCHHHHHHHHHC----CCEEEEECC
Q ss_conf 889999999999861888---29980068763688989864----982798427
Q gi|254781215|r 353 LRTTNNKISGLVEKYRPD---AIIIDANNTGARTCDYLEML----GYHVYRVLG 399 (511)
Q Consensus 353 ~~~~a~~i~~~~~~~~~~---~i~iD~~GvG~gV~d~L~~~----g~~v~~v~~ 399 (511)
T Consensus 208 TTTiAKLAa~~~l~~~~~~V~lIT~DtyRi--gA~eQLk~ya~il~vp~~vv~~ 259 (282)
T TIGR03499 208 TTTLAKLAARFVLEHGKKKVALITTDTYRI--GAVEQLKTYAKILGVPVKVARD 259 (282)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHHHHHHHHHCCEEEEECC
T ss_conf 889999999999973899679998077767--8999999999995974899399