HHsearch alignment for GI: 254781215 and conserved domain: cd01128
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.02 E-value=0.58 Score=24.65 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=27.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 246502576597899999999999808996699980
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA 114 (511)
T Consensus 18 R~gI~g~~gvGKT~Ll~~i~~~~~~~~~~~~~v~~l 53 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLL 53 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 778878999889999999999999858984999999