HHsearch alignment for GI: 254781215 and conserved domain: pfam02456
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=93.70 E-value=0.12 Score=28.88 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=46.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCC
Q ss_conf 24650257659789999999999980899669998085899999999999999985500013
Q gi|254781215|r 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140 (511)
Q Consensus 79 r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~ 140 (511)
T Consensus 89 I~vVYGPTG~GKSQLlRNlis~~lI~P~PETVfFItPq~~mIp---p~E~~aWe~Ql~EGNY 147 (370)
T pfam02456 89 IGVVYGPTGCGKSQLLRNLLSCQLIQPIPETVFFITPQKDMIP---PQEQTAWELQLCEGNY 147 (370)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC---HHHHHHHHHHHHHCCC
T ss_conf 9999889987789999998734667799972899767778679---8999999999873577