HHsearch alignment for GI: 254781215 and conserved domain: pfam03237
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=100.00 E-value=5e-36 Score=245.82 Aligned_cols=356 Identities=18% Similarity=0.113 Sum_probs=255.3
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 50257659789999999999980899669998085899999999999999985500013444322222233344432111
Q gi|254781215|r 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161 (511)
Q Consensus 82 V~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (511)
T Consensus 2 ~~ggr~~GKT~~~~~~~~~~a~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------~i- 68 (380)
T pfam03237 2 ILGSRQSGKTFAFAREALRHALGNGPKNQIILSASKAQARLEFKKGIIEIAGDLLEI---TFEEKNGN---------PI- 68 (380)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCC---CEEECCCC---------EE-
T ss_conf 426452528399999999999858997289997999999999999999966886387---16727887---------39-
Q ss_pred CCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHH-HHHH-HHHHCCCCCCEEEEEECCCCCCCCHHHH
Q ss_conf 2357861698530357556100212026761499971110299788-9888-8885079981389982389987655676
Q gi|254781215|r 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI-NLGI-LGFLTERNANRFWIMTSNPRRLSGKFYE 239 (511)
Q Consensus 162 ~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i-~e~i-~~~Lt~~g~~~~~i~~~nP~~~~g~fy~ 239 (511)
T Consensus 69 -~~~nGs~i~~~---~~~~~~~~~~~rG~~~~~i~~DE~a~~~~~~~~~~~~~~~~~~~~~~--~~~~stp~~~~~~~~~ 142 (380)
T pfam03237 69 -ILPNGAKLYFL---GLESETTAQGYRGASIAGIYFDEATWLPKFQESELVRRLRATKGKWR--KTFFSTPPSPGHWVYD 142 (380)
T ss_pred -EECCCCEEEEE---ECCCCCCHHHCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHCCCCCCC--EEEEECCCCCCCCHHH
T ss_conf -91599889996---25776643103485455499830453662789999864410479975--7999889899851989
Q ss_pred HHHCCC-------CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHCCCCC
Q ss_conf 530352-------4741798404336778977899999751898013544431756666787375599998864076531
Q gi|254781215|r 240 IFNKPL-------DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312 (511)
Q Consensus 240 ~~~~~~-------~~w~~~~i~~~~~p~~~~~~ie~~~~~~geds~~~r~evlgeFp~~~~~~~i~~~~ie~a~~r~~~~ 312 (511)
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~t~~d~~~~~~~~~e~l~~~~~~--~~~~qe~~g~f~~-~~g~if~~~~~~~~~~~~~~~ 219 (380)
T pfam03237 143 FWTGWLDDKGKRTFIPADVEVTIEDARALGPEYKEELRALYSD--EEFARLLMGEWVD-TSGSIFKRFELERCDVDEERP 219 (380)
T ss_pred HHHHHCCCCCCCCEEEEEEECCHHHHCCCCHHHHHHHHHHCCH--HHHHHHHCCCEEC-CCCCEECHHHHHHCCCCCCCC
T ss_conf 9855401677752022067456687132688999999876899--9999985886665-788571478885464675568
Q ss_pred CCCCEEEEEEECCCC-CCCCEEEEEE---CCC--EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
Q ss_conf 899708999623334-7841799982---275--5899873277898899999999998618882998006876368898
Q gi|254781215|r 313 DPYAPLIMGCDIAEE-GGDNTVVVLR---RGP--VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386 (511)
Q Consensus 313 ~~~~~~viGvDVAr~-G~D~svi~~r---~G~--~v~~~~~~~~~d~~~~a~~i~~~~~~~~~~~i~iD~~GvG~gV~d~ 386 (511)
T Consensus 220 p~~~~~~~g~D~~~~~~~D~t~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~i~id~~~~G~~~~~~ 299 (380)
T pfam03237 220 PEHREVIGGVDPAASRGGDYAALVVIAEVDGDKFYVLAREHERGLSPAEQAAIIKKLAERYNVIYIYIDDTGGGESVAQL 299 (380)
T ss_pred CCCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf 88855999986788888996699999965798599999998368899999999999986438759998378643079999
Q ss_pred HHHCCCE-EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC--CCH---HHHHHHHHCCCEEEECCCCEEEEEECHH
Q ss_conf 9864982-798427777664025522799999999999970899--981---8999998579679987998499984125
Q gi|254781215|r 387 LEMLGYH-VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL--INH---SGLIQNLKSLKSFIVPNTGELAIESKRV 460 (511)
Q Consensus 387 L~~~g~~-v~~v~~~~~~~~~~~y~N~rae~~~~~re~l~~g~l--~~d---~~l~~el~~~~~~~~~~~gki~ie~Kkk 460 (511)
T Consensus 300 l~~~~~~~~~~~~~a~~---------~k~~~~~~v~~l~e~g~v~i~~~~~~~~~i~el~~~~-~--~~~~------~~~ 361 (380)
T pfam03237 300 LRRELPGAAFTVRPAPK---------GKNARVLKVSDLIESGRLKVPRGAWCPASFEELEAYH-T--DGGN------ERS 361 (380)
T ss_pred HHHHCCCCCCCEEECCC---------HHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHH-H--CCCC------CCC
T ss_conf 99866446711058875---------1999999999999889899947862699999997503-0--3899------899
Q ss_pred HCCCCCCHHHHHHHHHC
Q ss_conf 48999898999999975
Q gi|254781215|r 461 KGAKSTDYSDGLMYTFA 477 (511)
Q Consensus 461 rg~~SPD~ADAl~l~fa 477 (511)
T Consensus 362 ~~~~hdd~~DAl~yAi~ 378 (380)
T pfam03237 362 DVDGHDDAADALRYALN 378 (380)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 99999889999999986