HHsearch alignment for GI: 254781215 and conserved domain: pfam03354
>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.
Probab=99.96 E-value=1.7e-24 Score=173.01 Aligned_cols=394 Identities=16% Similarity=0.116 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 8999999999998740565554210124650257659789999999999980--89966999808589999999999999
Q gi|254781215|r 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSK 130 (511)
Q Consensus 53 ~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~~ilw~Ei~k 130 (511)
T Consensus 1 PwQ~f~i~~ifGw~~~~---g~Rrfr~~~i~v~RkNGKS~l~a~i~ly~~~~~ge~~~ei~~~A~~~~QA~-~~f~~~~~ 76 (473)
T pfam03354 1 PWQKFILGLMFGWRKGC---GVRRFREAYVSVGRKNGKSYLMAIRVLYELLLGGKSNQEILVAATTFKQAE-KLFKYVKN 76 (473)
T ss_pred CCHHHHHHHEEEEEECC---CCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH-HHHHHHHH
T ss_conf 94615625144189289---988999999998268602699999999999709983874999979899999-99999999
Q ss_pred HHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCC-HHHHH
Q ss_conf 99855000134443222222333444321112357861698530357556100212026761499971110299-78898
Q gi|254781215|r 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINL 209 (511)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~-d~i~e 209 (511)
T Consensus 77 mi~~~p~l~~~~~~------~~~~~~~~~i~~~~t~s--~~~~ls~---~~~~~dG~~---~~~~i~DE~h~~~~~~~~~ 142 (473)
T pfam03354 77 QVKLSPFLSIANEN------KLLKSQKDGIEMKINNN--VFKALSN---NGDQYDGGN---PSLAIFDEMHEFKDRELVS 142 (473)
T ss_pred HHHCCHHHHHHHHC------CCCCCCCEEEEECCCCC--EEEEEEC---CCCCCCCCC---CCEEEEEECCCCCCHHHHH
T ss_conf 99739877755301------10131001589807896--8999857---898766998---7289987223048827899
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHC------C---CCCCEEEEE----C-----------CCCCCCC----
Q ss_conf 8888850799813899823899876556765303------5---247417984----0-----------4336778----
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK------P---LDDWKRFQI----D-----------TRTVEGI---- 261 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~~~~------~---~~~w~~~~i----~-----------~~~~p~~---- 261 (511)
T Consensus 143 ~l~sg~~~r~~~l~~~ITTag~~~~~~~~~~~~~~~~vl~g~~~~~d~~~f~~i~~~d~~dd~~D~~~W~kANP~lg~~~ 222 (473)
T pfam03354 143 TIVTGMRKQDNPQTIQITTAGPNRGGPYDEEREYIKRILEGDVERDDDSYFGLIYELDNDDEVKDPAKWIKANPLLGSSL 222 (473)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCC
T ss_conf 99876316888719997677889887189999999999708777678766999971698877689899998596767887
Q ss_pred CHHHHHH-HHHHC--CCCHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCEEEEE--
Q ss_conf 9778999-99751--898013544431756666787375599998864076531899708999623334784179998--
Q gi|254781215|r 262 DPSFHEG-IIARY--GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL-- 336 (511)
Q Consensus 262 ~~~~ie~-~~~~~--geds~~~r~evlgeFp~~~~~~~i~~~~ie~a~~r~~~~~~~~~~viGvDVAr~G~D~svi~~-- 336 (511)
T Consensus 223 ~~~~l~~~~~~a~~~p~~~~~f~~k~lN~w~~~~~~~wl~~~~w~~~~~~-~~~~~g~~~~~G~DlS~~~Dlta~~~~~~ 301 (473)
T pfam03354 223 TRDNLLKGLIDAIGSPLKMNKFLTKNFNLWMGQDTDSWLTLQDWEQAVFP-PFDINGRRVYIGVDLSMKGDVTALVFVYP 301 (473)
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHCCCC-HHHHCCCEEEEEEEECCCCCCCEEEEEEE
T ss_conf 99999999999864937689999972386344544657899999747898-57847996999984035776413799999
Q ss_pred ECCCE-------------------------------EEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCHHH
Q ss_conf 22755-------------------------------89987327789889999999999861--8882998006876368
Q gi|254781215|r 337 RRGPV-------------------------------IEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIIIDANNTGART 383 (511)
Q Consensus 337 r~G~~-------------------------------v~~~~~~~~~d~~~~a~~i~~~~~~~--~~~~i~iD~~GvG~gV 383 (511)
T Consensus 302 ~~~~~~~~~~~~ip~~~~~~~~~~~~~y~~w~~~G~~l~~~~g~~iD~~~v~~~i~~~~~~~~~~v~~i~yD~~~a-~~~ 380 (473)
T pfam03354 302 LDGKFYLHAHSFIPESQAEQIKQDGINYREFIDRGECLTLHDGGMIDPNQIIPWILDFITKTGLDVQAIGYDPWQA-KYF 380 (473)
T ss_pred ECCEEEEEEEEECCHHHHHHHHCCCCCHHHHHHHCCEEEECCCCEECHHHHHHHHHHHHHHCCCCEEEEEECHHHH-HHH
T ss_conf 7899999998656862766654015568999970987994489832699999999999996299725998466789-999
Q ss_pred HHHHHHCCC--EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHCCCEEEECCCCEEEEEECHH
Q ss_conf 898986498--2798427777664025522799999999999970899981-8999998579679987998499984125
Q gi|254781215|r 384 CDYLEMLGY--HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH-SGLIQNLKSLKSFIVPNTGELAIESKRV 460 (511)
Q Consensus 384 ~d~L~~~g~--~v~~v~~~~~~~~~~~y~N~rae~~~~~re~l~~g~l~~d-~~l~~el~~~~~~~~~~~gki~ie~Kkk 460 (511)
T Consensus 381 ~~~le~~g~~~~~v~~~Q~~~~ls---------~~~k~le~~~~~g~i~h~~npvl~w~~~Na~~~~d~~gni~~~K--~ 449 (473)
T pfam03354 381 IDRLESTFLDWPLVEIRQGFFSLS---------NPIKELQELVAENKLTHDGNPVMAWALNNAVIKIDAIGNIKINK--K 449 (473)
T ss_pred HHHHHHCCCCCCEEEECCCCCCCC---------HHHHHHHHHHHCCCEEECCCHHHHHHHCCEEEEECCCCCEEEEC--C
T ss_conf 999996189986698468763007---------79999999997799899968999999709899986999988702--5
Q ss_pred HCCCCCCHHHHHHHHHC
Q ss_conf 48999898999999975
Q gi|254781215|r 461 KGAKSTDYSDGLMYTFA 477 (511)
Q Consensus 461 rg~~SPD~ADAl~l~fa 477 (511)
T Consensus 450 ~s~~KID~~~A~v~A~~ 466 (473)
T pfam03354 450 KSTDKIDPAVALIMAMG 466 (473)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 77899489999999999