HHsearch alignment for GI: 254781215 and conserved domain: pfam05496
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=90.62 E-value=1.1 Score=22.82 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=59.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE-CCHH
Q ss_conf 77565557845899999999999874056--55542101246502576597899999999999808996699980-8589
Q gi|254781215|r 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSV--NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA-NSET 118 (511)
Q Consensus 42 ~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~--~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA-pt~~ 118 (511)
T Consensus 20 P~~l~e~vG----Qehl~~~l~~~i~a~~~~~~~l~h---~lf~GPPG~GKTTlAriiAk~~-----~~~~~~~s~~~i~ 87 (234)
T pfam05496 20 PRRLDEYIG----QEKVKENLKIFIEAAKKRGEALDH---VLLYGPPGLGKTTLANIIANEM-----GVNIRITSGPALE 87 (234)
T ss_pred CCCHHHCCC----HHHHHHHHHHHHHHHHHCCCCCCE---EEEECCCCCCHHHHHHHHHHHH-----CCCEEEECCHHHH
T ss_conf 897666069----499999999999988742777662---7887899998889999999840-----8753761426664
Q ss_pred HHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEEC
Q ss_conf 99999999999999855000134443222222333444321112357861698530357556100212026761499971
Q gi|254781215|r 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198 (511)
Q Consensus 119 Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~D 198 (511)
T Consensus 88 ~~~di-----~~~l~----------------------------------------------------~~~-~~-~ILFID 108 (234)
T pfam05496 88 KPGDL-----AAILT----------------------------------------------------NLE-PG-DVLFID 108 (234)
T ss_pred HHHHH-----HHHHH----------------------------------------------------HCC-CC-CEEEEE
T ss_conf 38999-----99998----------------------------------------------------458-99-889996
Q ss_pred CHHCCCHHHHHHHHHHHCCC
Q ss_conf 11029978898888885079
Q gi|254781215|r 199 EASGTPDVINLGILGFLTER 218 (511)
Q Consensus 199 EAsgI~d~i~e~i~~~Lt~~ 218 (511)
T Consensus 109 EIHr~nK~qqd~Llp~vE~g 128 (234)
T pfam05496 109 EIHRLNRAVEEILYPAMEDF 128 (234)
T ss_pred CHHHCCHHHHHHCCCCCCCC
T ss_conf 65435876887445533461