HHsearch alignment for GI: 254781215 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=90.62  E-value=1.1  Score=22.82  Aligned_cols=106  Identities=12%  Similarity=0.081  Sum_probs=59.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE-CCHH
Q ss_conf             77565557845899999999999874056--55542101246502576597899999999999808996699980-8589
Q gi|254781215|r   42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSV--NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA-NSET  118 (511)
Q Consensus        42 ~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~--~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtA-pt~~  118 (511)
T Consensus        20 P~~l~e~vG----Qehl~~~l~~~i~a~~~~~~~l~h---~lf~GPPG~GKTTlAriiAk~~-----~~~~~~~s~~~i~   87 (234)
T pfam05496        20 PRRLDEYIG----QEKVKENLKIFIEAAKKRGEALDH---VLLYGPPGLGKTTLANIIANEM-----GVNIRITSGPALE   87 (234)
T ss_pred             CCCHHHCCC----HHHHHHHHHHHHHHHHHCCCCCCE---EEEECCCCCCHHHHHHHHHHHH-----CCCEEEECCHHHH
T ss_conf             897666069----499999999999988742777662---7887899998889999999840-----8753761426664


Q ss_pred             HHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEEC
Q ss_conf             99999999999999855000134443222222333444321112357861698530357556100212026761499971
Q gi|254781215|r  119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND  198 (511)
Q Consensus       119 Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~D  198 (511)
T Consensus        88 ~~~di-----~~~l~----------------------------------------------------~~~-~~-~ILFID  108 (234)
T pfam05496        88 KPGDL-----AAILT----------------------------------------------------NLE-PG-DVLFID  108 (234)
T ss_pred             HHHHH-----HHHHH----------------------------------------------------HCC-CC-CEEEEE
T ss_conf             38999-----99998----------------------------------------------------458-99-889996


Q ss_pred             CHHCCCHHHHHHHHHHHCCC
Q ss_conf             11029978898888885079
Q gi|254781215|r  199 EASGTPDVINLGILGFLTER  218 (511)
Q Consensus       199 EAsgI~d~i~e~i~~~Lt~~  218 (511)
T Consensus       109 EIHr~nK~qqd~Llp~vE~g  128 (234)
T pfam05496       109 EIHRLNRAVEEILYPAMEDF  128 (234)
T ss_pred             CHHHCCHHHHHHCCCCCCCC
T ss_conf             65435876887445533461