HHsearch alignment for GI: 254781215 and conserved domain: smart00487
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.53 E-value=1.3e-06 Score=60.20 Aligned_cols=167 Identities=17% Similarity=0.043 Sum_probs=89.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 55784589999999999987405655542101246502576597899999999999808996699980858999999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~ 126 (511)
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~-----------~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~-~~ 72 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGL-----------RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQW-AE 72 (201)
T ss_pred CCCCCCHHHHHHHHHHHCCC-----------CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH-HH
T ss_conf 79999988999999998389-----------9889989999609999999999986338997599990859999999-98
Q ss_pred HHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH
Q ss_conf 9999998550001344432222223334443211123578-616985303575561002120267614999711102997
Q gi|254781215|r 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS-KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205 (511)
Q Consensus 127 Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d 205 (511)
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~i~t~~~l~~-~~~~~~-~~~~~~~~vIiDE~H~~~~ 143 (201)
T smart00487 73 ELKKLGPSLGLKVVGLYGGDSK-------REQLRKLESGKTDILVTTPGRLLD-LLENDL-LELSNVDLVILDEAHRLLD 143 (201)
T ss_pred HHHHCCCCCEEEEEEEECCCCH-------HHHHHHHHCCCCCEEEECHHHHHH-HHHHCC-CCCCCCEEEEEECHHHHHC
T ss_conf 8601021020445565247737-------999999975999899955899999-997275-4525431999989677512
Q ss_pred -HHHHHHHHHHCCC-CCCEEEEEECCCCCCC
Q ss_conf -8898888885079-9813899823899876
Q gi|254781215|r 206 -VINLGILGFLTER-NANRFWIMTSNPRRLS 234 (511)
Q Consensus 206 -~i~e~i~~~Lt~~-g~~~~~i~~~nP~~~~ 234 (511)
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~i~lSAT~~~~~ 174 (201)
T smart00487 144 GGFGDQLEKLLKLLPKNVQLLLLSATPPEEI 174 (201)
T ss_pred CCCHHHHHHHHHHCCCCCCEEEECCCCCHHH
T ss_conf 5709999999996799997899924898689