HHsearch alignment for GI: 254781215 and conserved domain: smart00488

>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.82  E-value=0.0002  Score=46.52  Aligned_cols=81  Identities=28%  Similarity=0.465  Sum_probs=56.9

Q ss_pred             HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHH---CCC
Q ss_conf             7764214557775655578458999999999998740565554210124650257659789-999999999980---899
Q gi|254781215|r   32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT-LNAWLVLWLMST---RPG  107 (511)
Q Consensus        32 ~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~-l~a~l~lw~l~~---~p~  107 (511)
T Consensus         1 ~~~~FPy~-----------py~~Q~e~m~~v~~~l~~~~--------~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~   61 (289)
T smart00488        1 LLFYFPYE-----------PYPIQYEFMEELKRVLDRGK--------IGILESPTGTGKTLSLLCLTLTWLRSFPERIQK   61 (289)
T ss_pred             CEECCCCC-----------CCHHHHHHHHHHHHHHHCCC--------EEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCC
T ss_conf             93278999-----------99899999999999997499--------799989996518999999999999967010245


Q ss_pred             CEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf             6699980858999999999999999
Q gi|254781215|r  108 ISVICLANSETQLKTTLWAEVSKWL  132 (511)
Q Consensus       108 ~kv~vtApt~~Q~~~ilw~Ei~k~~  132 (511)
T Consensus        62 ~ki~~~t~t~~~~~~~-~~elr~~~   85 (289)
T smart00488       62 IKLIYLSRTVSEIEKR-LEELRKLM   85 (289)
T ss_pred             CEEEEEECCHHHHHHH-HHHHHHHC
T ss_conf             6168761537889999-99998632