HHsearch results for GI: 254781215 and protein with PDBid: 1cu1_A

Probab=91.72  E-value=0.54  Score=23.49  Aligned_cols=127  Identities=19%  Similarity=0.038  Sum_probs=65.0

Q ss_pred             EEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             1246502-576597899999999999808996699980858999999999999999855000134443222222333444
Q gi|254781215|r   78 FKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD  156 (511)
Q Consensus        78 ~r~aV~s-grG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (511)
                      .++.|-. .-|.|||+-.--.+     ...+.+++|+.|..--++.+ -.++++.+...+...           ..+...
T Consensus       211 ~qV~VL~a~TGSGKTTqVP~~L-----l~~g~kIlV~qPRRvAA~sV-A~rvae~lg~~~g~~-----------vg~~~~  273 (645)
T 1cu1_A          211 FQVAHLHAPTGSGKSTKVPAAY-----AAQGYKVLVLNPSVAATLGF-GAYMSKAHGIDPNIR-----------TGVRTI  273 (645)
T ss_dssp             CEEEEEECCSSSSTTTHHHHHH-----HTTTCCEEEEESCHHHHHHH-HHHHHHHTSSCCEEE-----------CSSCCB
T ss_pred             CCEEEEECCCCCCHHHHHHHHH-----HHCCCCEEEECCCHHHHHHH-HHHHHHHHCCCCCCE-----------EEEEEE
T ss_conf             7389997689999889999999-----97799599977768999999-999999858997628-----------858996


Q ss_pred             CCCCCCCCCCCEEEEE-ECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH---HHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             3211123578616985-303575561002120267614999711102997---889888888507998138998238998
Q gi|254781215|r  157 VLHCSLGIDSKHYSTM-CRTYSEERPDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFWIMTSNPRR  232 (511)
Q Consensus       157 ~~~~~~~~~~~~~~~~-~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d---~i~e~i~~~Lt~~g~~~~~i~~~nP~~  232 (511)
                            .......+++ +.... +...     +-.+..++|+||++.-+.   .....+...+...+....++|..+|.+
T Consensus       274 ------t~~T~I~~~T~G~lL~-~~~~-----~L~~ysvIImDEaHERd~~SDlllGll~~~~~~~~~lkvIlMSATppg  341 (645)
T 1cu1_A          274 ------TTGAPVTYSTYGKFLA-DGGC-----SGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG  341 (645)
T ss_dssp             ------CCCCSEEEEEHHHHHH-HTSC-----CTTSCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred             ------CCCEEEEEECCHHHHH-CCCC-----HHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             ------6990699988588986-4731-----005888999958601888899999999999874888279995676574


Q ss_pred             C
Q ss_conf             7
Q gi|254781215|r  233 L  233 (511)
Q Consensus       233 ~  233 (511)
                      .
T Consensus       342 ~  342 (645)
T 1cu1_A          342 S  342 (645)
T ss_dssp             C
T ss_pred             C
T ss_conf             3