HHsearch results for GI: 254781215 and protein with PDBid: 1jr3_A
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.25 E-value=0.13 Score=27.41 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=72.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 77565557845899999999999874056555421012465025765978999999999998089966999808589999
Q gi|254781215|r 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121 (511)
Q Consensus 42 ~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~ 121 (511)
+..+..+.| |.++.+.+.....++..-| -+-..+..|+|||+++-.++-...+..+....-|.. -..-+
T Consensus 12 P~~~~d~ig----~~~~~~~l~~~~~~~~~~h-----~~L~~Gp~G~GKt~~a~~la~~l~~~~~~~~~~~~~--~~~~~ 80 (373)
T 1jr3_A 12 PQTFADVVG----QEHVLTALANGLSLGRIHH-----AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV--CDNCR 80 (373)
T ss_dssp CCSTTTSCS----CHHHHHHHHHHHHHTCCCS-----EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS--SHHHH
T ss_pred CCCHHHCCC----HHHHHHHHHHHHHCCCCCC-----EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC--CHHHH
T ss_conf 898998059----6999999999997699771-----476579999889999999999867877887676765--35899
Q ss_pred HHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHH
Q ss_conf 99999999999855000134443222222333444321112357861698530357556100212026761499971110
Q gi|254781215|r 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201 (511)
Q Consensus 122 ~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAs 201 (511)
++.. ...+. ....... .. ... +......... +.....+.+ -++|+||+.
T Consensus 81 -----~~~~--~~~~d--~~~~~~~-----------~~--~~i--~~ir~~~~~~------~~~~~~~~~-kviiide~d 129 (373)
T 1jr3_A 81 -----EIEQ--GRFVD--LIEIDAA-----------SR--TKV--EDTRDLLDNV------QYAPARGRF-KVYLIDEVH 129 (373)
T ss_dssp -----HHHT--SCCSS--CEEEETT-----------CS--CCS--SCHHHHHHHT------TSCCSSSSS-EEEEEECGG
T ss_pred -----HHHC--CCCCC--EEEECCC-----------CC--CCH--HHHHHHHHHH------HHCCCCCCC-EEEEEECCC
T ss_conf -----9975--89971--7985221-----------02--889--9999999998------546657997-699986836
Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECC-CCCC
Q ss_conf 2997889888888507998138998238-9987
Q gi|254781215|r 202 GTPDVINLGILGFLTERNANRFWIMTSN-PRRL 233 (511)
Q Consensus 202 gI~d~i~e~i~~~Lt~~g~~~~~i~~~n-P~~~ 233 (511)
.+.....+++..+|-.+....++++++| |.+.
T Consensus 130 ~l~~~a~n~Llk~lEep~~~~~~il~t~~~~~~ 162 (373)
T 1jr3_A 130 MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHC
T ss_conf 389999999999985788673898844875654