HHsearch results for GI: 254781215 and protein with PDBid: 1q0u_A
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.17 E-value=0.0028 Score=37.88 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=48.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHH
Q ss_conf 55784589999999999987405655542101246502576597899999999999808-996699980858999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTT 123 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~-p~~kv~vtApt~~Q~~~i 123 (511)
+|..|.+-|+.++..|.... -+.|.|..|+|||.....-++..+... .+.+.++..|+...+...
T Consensus 23 g~~~pt~iQ~~aip~il~g~------------dvii~a~TGsGKTlayllp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (219)
T 1q0u_A 23 RFYKPTEIQERIIPGALRGE------------SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQI 88 (219)
T ss_dssp TCCSCCHHHHHHHHHHHHTC------------CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCC------------CEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCHHHHHHHH
T ss_conf 99999999999999996799------------8899817999840577635554022345676530111205677777