HHsearch results for GI: 254781215 and protein with PDBid: 1rif_A

>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.82  E-value=9.2e-07  Score=59.86  Aligned_cols=157  Identities=10%  Similarity=0.034  Sum_probs=86.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r   50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS  129 (511)
Q Consensus        50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~  129 (511)
                      -||++|.+++.....+.            +..+.++.|.|||.+++.++.++.. .++.++++++|+..=+.+ ...++.
T Consensus       113 ~lrdyQ~eav~~~l~~~------------~~il~~pTGsGKT~i~~~i~~~~~~-~~~~k~Liivp~~~Lv~Q-~~~~~~  178 (282)
T 1rif_A          113 EPHWYQKDAVFEGLVNR------------RRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQ-MADDFV  178 (282)
T ss_dssp             CCCHHHHHHHHHHHHHS------------EEEECCCTTSCHHHHHHHHHHHHHH-HCSSEEEEECSSHHHHHH-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHCC------------CEEEECCCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCHHHHHH-HHHHHH
T ss_conf             87199999999999749------------8299857889778999999997431-367508999797899999-999888


Q ss_pred             HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHH
Q ss_conf             99985500013444322222233344432111235786169853035755610021202676149997111029978898
Q gi|254781215|r  130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL  209 (511)
Q Consensus       130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e  209 (511)
                      ++....... -..........         ..........+.+.........+.+     +...++|+|||+.+....+.
T Consensus       179 ~~~~~~~~~-~~~i~~g~~~~---------~~~~~~~~i~i~t~qsl~~~~~~~~-----~~f~~VIiDEaH~~~a~~~~  243 (282)
T 1rif_A          179 DYRLFSHAM-IKKIGGGASKD---------DKYKNDAPVVVGTWQTVVKQPKEWF-----SQFGMMMNDECHLATGKSIS  243 (282)
T ss_dssp             HHTSCCGGG-EEECSTTCSST---------TCCCTTCSEEEECHHHHTTSCGGGG-----GGEEEEEEETGGGCCHHHHH
T ss_pred             HHCCCCCCC-CEEEECCCCCC---------CCCCCCCEEEEEEEHHHHHCCHHHC-----CCCCEEEEECCCCCCCHHHH
T ss_conf             753675335-30330454465---------5334343699985055332122114-----78899999289677833099


Q ss_pred             HHHHHHCCCCCCEEEEEECCCCCCCCHH
Q ss_conf             8888850799813899823899876556
Q gi|254781215|r  210 GILGFLTERNANRFWIMTSNPRRLSGKF  237 (511)
Q Consensus       210 ~i~~~Lt~~g~~~~~i~~~nP~~~~g~f  237 (511)
                      .+...+  .+++.++-++++|.+.....
T Consensus       244 ~i~~~~--~~~~~rlGlTaT~~~~~~~~  269 (282)
T 1rif_A          244 SIISGL--NNCMFKFGLSGSLRDGKANI  269 (282)
T ss_dssp             HHTTTC--TTCCEEEEECSSCCTTSTTH
T ss_pred             HHHHHC--CCCCEEEEEEEECCCCCCCE
T ss_conf             999854--08796899985269987432