HHsearch results for GI: 254781215 and protein with PDBid: 1rif_A
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.82 E-value=9.2e-07 Score=59.86 Aligned_cols=157 Identities=10% Similarity=0.034 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
-||++|.+++.....+. +..+.++.|.|||.+++.++.++.. .++.++++++|+..=+.+ ...++.
T Consensus 113 ~lrdyQ~eav~~~l~~~------------~~il~~pTGsGKT~i~~~i~~~~~~-~~~~k~Liivp~~~Lv~Q-~~~~~~ 178 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNR------------RRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQ-MADDFV 178 (282)
T ss_dssp CCCHHHHHHHHHHHHHS------------EEEECCCTTSCHHHHHHHHHHHHHH-HCSSEEEEECSSHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHCC------------CEEEECCCCCCHHHHHHHHHHHHHC-CCCCCEEEEECCHHHHHH-HHHHHH
T ss_conf 87199999999999749------------8299857889778999999997431-367508999797899999-999888
Q ss_pred HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHH
Q ss_conf 99985500013444322222233344432111235786169853035755610021202676149997111029978898
Q gi|254781215|r 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209 (511)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e 209 (511)
++....... -.......... ..........+.+.........+.+ +...++|+|||+.+....+.
T Consensus 179 ~~~~~~~~~-~~~i~~g~~~~---------~~~~~~~~i~i~t~qsl~~~~~~~~-----~~f~~VIiDEaH~~~a~~~~ 243 (282)
T 1rif_A 179 DYRLFSHAM-IKKIGGGASKD---------DKYKNDAPVVVGTWQTVVKQPKEWF-----SQFGMMMNDECHLATGKSIS 243 (282)
T ss_dssp HHTSCCGGG-EEECSTTCSST---------TCCCTTCSEEEECHHHHTTSCGGGG-----GGEEEEEEETGGGCCHHHHH
T ss_pred HHCCCCCCC-CEEEECCCCCC---------CCCCCCCEEEEEEEHHHHHCCHHHC-----CCCCEEEEECCCCCCCHHHH
T ss_conf 753675335-30330454465---------5334343699985055332122114-----78899999289677833099
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCHH
Q ss_conf 8888850799813899823899876556
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNPRRLSGKF 237 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP~~~~g~f 237 (511)
.+...+ .+++.++-++++|.+.....
T Consensus 244 ~i~~~~--~~~~~rlGlTaT~~~~~~~~ 269 (282)
T 1rif_A 244 SIISGL--NNCMFKFGLSGSLRDGKANI 269 (282)
T ss_dssp HHTTTC--TTCCEEEEECSSCCTTSTTH
T ss_pred HHHHHC--CCCCEEEEEEEECCCCCCCE
T ss_conf 999854--08796899985269987432