HHsearch results for GI: 254781215 and protein with PDBid: 1s2m_A

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=96.79  E-value=0.021  Score=32.41  Aligned_cols=66  Identities=21%  Similarity=0.156  Sum_probs=44.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHH
Q ss_conf             5557845899999999999874056555421012465025765978999999999998-08996699980858999999
Q gi|254781215|r   46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTT  123 (511)
Q Consensus        46 ~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~-~~p~~kv~vtApt~~Q~~~i  123 (511)
                      .+|..|.+-|++++..+-..      +      -+-|.|+.|.|||.....-++-... ......+++..|+...+...
T Consensus        39 ~g~~~pt~iQ~~ai~~il~g------~------dviv~apTGsGKTlaf~lp~l~~~~~~~~~~~~li~~~~~~~~~q~  105 (400)
T 1s2m_A           39 AGFEKPSPIQEEAIPVAITG------R------DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQT  105 (400)
T ss_dssp             TTCCSCCHHHHHHHHHHHHT------C------CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHH
T ss_conf             79999999999999999859------9------8899899988378999999999644314785189993538988899