HHsearch results for GI: 254781215 and protein with PDBid: 1w36_D

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.87  E-value=0.00078  Score=41.42  Aligned_cols=147  Identities=22%  Similarity=0.163  Sum_probs=76.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf             458999999999998740565554210124650257659789999999999980--899669998085899999999999
Q gi|254781215|r   51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEV  128 (511)
Q Consensus        51 P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~~ilw~Ei  128 (511)
                      ..+||++++.....+.            =+.|.+|=|+|||+++..++.+++..  .++.+|+++|||-.-+..+. ..+
T Consensus       150 ~~~~Q~~Av~~al~~~------------~~lI~GgpGTGKTtti~~~i~~l~~~~~~~~~~Ill~ApTgkAa~~L~-e~~  216 (608)
T 1w36_D          150 EINWQKVAAAVALTRR------------ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT-ESL  216 (608)
T ss_dssp             SCCHHHHHHHHHHTBS------------EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH-HHH
T ss_pred             CCHHHHHHHHHHHCCC------------EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHH
T ss_conf             9889999999997099------------089993899729999999999999974157984999948399999999-998


Q ss_pred             HHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHH
Q ss_conf             99998550001344432222223334443211123578616985303575561002120267614999711102997889
Q gi|254781215|r  129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN  208 (511)
Q Consensus       129 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~  208 (511)
                      .+-.........   .....   .......+..+.......     .+. .+.     .+-....++++||++.++...+
T Consensus       217 ~~~~~~i~~~~~---~~~~~---~~~~~t~h~ll~~~~~~~-----~~~-~~~-----~~~~~~~~~ivDE~sm~~~~~~  279 (608)
T 1w36_D          217 GKALRQLPLTDE---QKKRI---PEDASTLHRLLGAQPGSQ-----RLR-HHA-----GNPLHLDVLVVDEASMIDLPMM  279 (608)
T ss_dssp             THHHHHSSCCSC---CCCSC---SCCCBTTTSCC-----------------CT-----TSCCSCSEEEECSGGGCBHHHH
T ss_pred             HHHHHHCCCCCH---HHHHC---CCHHHHHHHHHHCCCCCH-----HHH-HHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             767740462200---33322---321556999974165303-----667-656-----4111223677678865419988


Q ss_pred             HHHHHHHCCCCCCEEEEEECCC
Q ss_conf             8888885079981389982389
Q gi|254781215|r  209 LGILGFLTERNANRFWIMTSNP  230 (511)
Q Consensus       209 e~i~~~Lt~~g~~~~~i~~~nP  230 (511)
                      ..+..++.. +.+.  +..+-+
T Consensus       280 ~~~~~a~~~-~~~l--~l~gD~  298 (608)
T 1w36_D          280 SRLIDALPD-HARV--IFLGDR  298 (608)
T ss_dssp             HHHHHTCCT-TCEE--EEEECT
T ss_pred             HHHHHHHHC-CCEE--EEECCH
T ss_conf             778776205-6479--983330