HHsearch results for GI: 254781215 and protein with PDBid: 1wp9_A

>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19
Probab=98.43  E-value=1.2e-06  Score=59.25  Aligned_cols=171  Identities=18%  Similarity=0.086  Sum_probs=81.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Q ss_conf             55784589999999999987405655542101246502576597899999999999808996699980858999999999
Q gi|254781215|r   47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA  126 (511)
Q Consensus        47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~  126 (511)
                      ++..||+||.+++...    .+.         .+-+.++.|.|||..+..++.. .+.+.+.++++++||..-+.+. ..
T Consensus         6 ~~~~pr~yQ~~~~~~~----~~~---------n~ll~~pTG~GKT~~a~~~~~~-~~~~~~~~vlil~Pt~~L~~Q~-~~   70 (494)
T 1wp9_A            6 DLIQPRIYQEVIYAKC----KET---------NCLIVLPTGLGKTLIAMMIAEY-RLTKYGGKVLMLAPTKPLVLQH-AE   70 (494)
T ss_dssp             HHHCCCHHHHHHHHHG----GGS---------CEEEECCTTSCHHHHHHHHHHH-HHHHSCSCEEEECSSHHHHHHH-HH
T ss_pred             CCCCCCHHHHHHHHHH----HCC---------CEEEEECCCCHHHHHHHHHHHH-HHHHCCCCEEEEECCHHHHHHH-HH
T ss_conf             8889999999999999----579---------9599979977299999999999-9985699199994849999999-99


Q ss_pred             HHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH-
Q ss_conf             9999998550001344432222223334443211123578616985303575561002120267614999711102997-
Q gi|254781215|r  127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-  205 (511)
Q Consensus       127 Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d-  205 (511)
                      ++.++....+.+-. ..       .+..........-......+++....  .+.-...........++|+|||..+.. 
T Consensus        71 ~~~~~~~~~~~~v~-~~-------~g~~~~~~~~~~~~~~~i~v~t~~~l--~~~~~~~~~~~~~~~~vi~DE~h~~~~~  140 (494)
T 1wp9_A           71 SFRRLFNLPPEKIV-AL-------TGEKSPEERSKAWARAKVIVATPQTI--ENDLLAGRISLEDVSLIVFDEAHRAVGN  140 (494)
T ss_dssp             HHHHHBCSCGGGEE-EE-------CSCSCHHHHHHHHHHCSEEEECHHHH--HHHHHTTSCCTTSCSEEEEETGGGCSTT
T ss_pred             HHHHHHCCCCCEEE-EE-------ECCCCHHHHHHHHHCCCEEEEEEEEE--HHHHHCCCCCCCCCCCEEEEEHHHHCCC
T ss_conf             99997467997899-99-------78989899999973267069974131--1255414200045673378760221243


Q ss_pred             HHHHHHHHH-HCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf             889888888-5079981389982389987655676530
Q gi|254781215|r  206 VINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFN  242 (511)
Q Consensus       206 ~i~e~i~~~-Lt~~g~~~~~i~~~nP~~~~g~fy~~~~  242 (511)
                      ..+..+.-. .........+..+++|......+.+.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~l~lsatp~~~~~~~~~~~~  178 (494)
T 1wp9_A          141 YAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVIN  178 (494)
T ss_dssp             CHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             27889999998636666488751476521668999997