HHsearch results for GI: 254781215 and protein with PDBid: 1wp9_A
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19
Probab=98.43 E-value=1.2e-06 Score=59.25 Aligned_cols=171 Identities=18% Similarity=0.086 Sum_probs=81.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 55784589999999999987405655542101246502576597899999999999808996699980858999999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~ 126 (511)
++..||+||.+++... .+. .+-+.++.|.|||..+..++.. .+.+.+.++++++||..-+.+. ..
T Consensus 6 ~~~~pr~yQ~~~~~~~----~~~---------n~ll~~pTG~GKT~~a~~~~~~-~~~~~~~~vlil~Pt~~L~~Q~-~~ 70 (494)
T 1wp9_A 6 DLIQPRIYQEVIYAKC----KET---------NCLIVLPTGLGKTLIAMMIAEY-RLTKYGGKVLMLAPTKPLVLQH-AE 70 (494)
T ss_dssp HHHCCCHHHHHHHHHG----GGS---------CEEEECCTTSCHHHHHHHHHHH-HHHHSCSCEEEECSSHHHHHHH-HH
T ss_pred CCCCCCHHHHHHHHHH----HCC---------CEEEEECCCCHHHHHHHHHHHH-HHHHCCCCEEEEECCHHHHHHH-HH
T ss_conf 8889999999999999----579---------9599979977299999999999-9985699199994849999999-99
Q ss_pred HHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH-
Q ss_conf 9999998550001344432222223334443211123578616985303575561002120267614999711102997-
Q gi|254781215|r 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD- 205 (511)
Q Consensus 127 Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d- 205 (511)
++.++....+.+-. .. .+..........-......+++.... .+.-...........++|+|||..+..
T Consensus 71 ~~~~~~~~~~~~v~-~~-------~g~~~~~~~~~~~~~~~i~v~t~~~l--~~~~~~~~~~~~~~~~vi~DE~h~~~~~ 140 (494)
T 1wp9_A 71 SFRRLFNLPPEKIV-AL-------TGEKSPEERSKAWARAKVIVATPQTI--ENDLLAGRISLEDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp HHHHHBCSCGGGEE-EE-------CSCSCHHHHHHHHHHCSEEEECHHHH--HHHHHTTSCCTTSCSEEEEETGGGCSTT
T ss_pred HHHHHHCCCCCEEE-EE-------ECCCCHHHHHHHHHCCCEEEEEEEEE--HHHHHCCCCCCCCCCCEEEEEHHHHCCC
T ss_conf 99997467997899-99-------78989899999973267069974131--1255414200045673378760221243
Q ss_pred HHHHHHHHH-HCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 889888888-5079981389982389987655676530
Q gi|254781215|r 206 VINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFN 242 (511)
Q Consensus 206 ~i~e~i~~~-Lt~~g~~~~~i~~~nP~~~~g~fy~~~~ 242 (511)
..+..+.-. .........+..+++|......+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~l~lsatp~~~~~~~~~~~~ 178 (494)
T 1wp9_A 141 YAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVIN 178 (494)
T ss_dssp CHHHHHHHHHHHHCSSCCEEEEESCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 27889999998636666488751476521668999997