HHsearch results for GI: 254781215 and protein with PDBid: 2gk6_A

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A

Probab=96.46  E-value=0.0087  Score=34.79  Aligned_cols=60  Identities=22%  Similarity=0.202  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf             5899999999999874056555421012465025765978999999999998089966999808589999999
Q gi|254781215|r   52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL  124 (511)
Q Consensus        52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~il  124 (511)
                      -+=|+++++..-.+         +   =.-|.++=|+|||++++.++.+ ++.+++.+|+++|||-..+.+++
T Consensus       182 N~~Q~~AV~~al~~---------~---l~lI~GPPGTGKT~ti~~ii~~-l~~~~~~kILv~apTN~Avd~i~  241 (624)
T 2gk6_A          182 NHSQVYAVKTVLQR---------P---LSLIQGPPGTGKTVTSATIVYH-LARQGNGPVLVCAPSNIAVDQLT  241 (624)
T ss_dssp             CHHHHHHHHHHHTC---------S---EEEEECCTTSCHHHHHHHHHHH-HHTSSSCCEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHHCC---------C---CEEEECCCCCCHHHHHHHHHHH-HHHCCCCCEEEEECCHHHHHHHH
T ss_conf             99999999999639---------9---7599889999830899999999-99706897999938779999999