HHsearch results for GI: 254781215 and protein with PDBid: 2j0s_A
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.50 E-value=0.00035 Score=43.63 Aligned_cols=73 Identities=16% Similarity=0.109 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHH
Q ss_conf 557845899999999999874056555421012465025765978999999999998-0899669998085899999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLW 125 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~-~~p~~kv~vtApt~~Q~~~ilw 125 (511)
+|..|.++|++++..+-.. + .+.|.+..|.|||......++..+. .....++++++||...+.++ .
T Consensus 56 g~~~pt~iQ~~ai~~~l~g------~------dvlv~apTGsGKTl~f~lp~l~~~~~~~~~~~~lil~Pt~~l~~q~-~ 122 (410)
T 2j0s_A 56 GFEKPSAIQQRAIKQIIKG------R------DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI-Q 122 (410)
T ss_dssp TCCSCCHHHHHHHHHHHTT------C------CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHH-H
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHH-H
T ss_conf 9999899999999999869------9------9899899983689999999998313566786289993839999999-9
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781215|r 126 AEVSKWL 132 (511)
Q Consensus 126 ~Ei~k~~ 132 (511)
..+.++.
T Consensus 123 ~~~~~~~ 129 (410)
T 2j0s_A 123 KGLLALG 129 (410)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
T ss_conf 9999863