HHsearch results for GI: 254781215 and protein with PDBid: 2v6i_A
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.59 E-value=0.015 Score=33.32 Aligned_cols=135 Identities=13% Similarity=0.016 Sum_probs=60.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 65025765978999999999998089966999808589999999999999998550001344432222223334443211
Q gi|254781215|r 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC 160 (511)
Q Consensus 81 aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (511)
-|.+.-|+|||+.+...++.... ..+.+++|++||..=+.+ +.+.++..+.... .... ..
T Consensus 6 vl~~~tGSGKT~~~l~~ll~~~~-~~~~rvLvl~PtR~La~q-----v~~~L~~~~~~~~----~~~~----------~~ 65 (431)
T 2v6i_A 6 VLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILAPTRVVASE-----MYEALRGEPIRYM----TPAV----------QS 65 (431)
T ss_dssp EEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHH-----HHHHTTTSCEEEC--------------------
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEHHHHHHHHH-----HHHHHHCCCCCEE----EEEE----------EE
T ss_conf 99938984989999999999876-579849999428999999-----9999847788526----6789----------87
Q ss_pred CCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHHH--HHHHHCCCCCCEEEEEECCCCCCCCHHH
Q ss_conf 12357861698530357556100212026761499971110299788988--8888507998138998238998765567
Q gi|254781215|r 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG--ILGFLTERNANRFWIMTSNPRRLSGKFY 238 (511)
Q Consensus 161 ~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~--i~~~Lt~~g~~~~~i~~~nP~~~~g~fy 238 (511)
.........+++.-.... .-..+....+..++|+|||+.+++..... ....+...+....+++..+|.+....|-
T Consensus 66 ~~~~~~~I~v~T~~~l~~---~l~~~~~~~~~~~IIiDEaH~~~~~~~~~~~~l~~~~~~~~~~~i~mSAT~p~~~~~~~ 142 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTM---KLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp ---CCCSEEEEEHHHHHH---HHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred EECCCCEEEEECHHHHHH---HHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEC
T ss_conf 415998699978599999---98668543660589995020366416888668998642667758999658876456601