HHsearch results for GI: 254781215 and protein with PDBid: 2wjy_A
>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.92 E-value=0.025 Score=31.88 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Q ss_conf 5899999999999874056555421012465025765978999999999998089966999808589999999
Q gi|254781215|r 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124 (511)
Q Consensus 52 ~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~il 124 (511)
-+=|.++++.+-.+ | =..|.++=|+|||++++.++.. +...+..+|+|+|||-..+.+++
T Consensus 358 N~sQ~~AV~~al~~---------~---lsLIqGPPGTGKT~Ti~~iI~~-L~~~~~~kILVcApSN~AVD~l~ 417 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---------P---LSLIQGPPGTGKTVTSATIVYH-LARQGNGPVLVCAPSNIAVDQLT 417 (800)
T ss_dssp CHHHHHHHHHHHTS---------S---EEEEECCTTSCHHHHHHHHHHH-HHTTCSSCEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHHCC---------C---CEEEECCCCCCHHHHHHHHHHH-HHHHCCCCEEEEECCHHHHHHHH
T ss_conf 99999999999649---------9---7289899999950999999999-99706898999948669999999