HHsearch results for GI: 254781215 and protein with PDBid: 3c6a_A
>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A
Probab=99.20 E-value=5.4e-10 Score=80.28 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=110.6
Q ss_pred HCCCCCCCCCEEEEEEECCCC-CCCCEEEEEECCC----EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf 076531899708999623334-7841799982275----58998732778988999999999986188829980068763
Q gi|254781215|r 307 NREPCPDPYAPLIMGCDIAEE-GGDNTVVVLRRGP----VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA 381 (511)
Q Consensus 307 ~r~~~~~~~~~~viGvDVAr~-G~D~svi~~r~G~----~v~~~~~~~~~d~~~~a~~i~~~~~~~~~~~i~iD~~GvG~ 381 (511)
..+..|.++..+++|||||++ |.|.|||.+.+-. ........+..++..++..+..++..|++..++|+.++.|.
T Consensus 50 ~iwe~P~~g~~YvigvD~A~G~g~DyS~i~V~Dvt~~~~~qVA~~r~n~i~p~~~a~ii~~i~~~Yn~a~v~vE~Nn~G~ 129 (232)
T 3c6a_A 50 YQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITEFPYKQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGV 129 (232)
T ss_dssp EESSCCCTTCCEEEEEECCCSSSSCCEEEEEEECSSSSEEEEEEEEESCCCTTTHHHHHHHHHHHTTSCCEEEBCSHHHH
T ss_pred EEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf 89936899984999997478768887879999767987148999740366878999999999987055739999778679
Q ss_pred HHHHHHH-HCCCE-EEEECCCCCCCCHHHH--HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCEEEECCCCEEEEE
Q ss_conf 6889898-64982-7984277776640255--22799999999999970899-981899999857967998799849998
Q gi|254781215|r 382 RTCDYLE-MLGYH-VYRVLGQKRAVDLEFC--RNRRTELHVKMADWLEFASL-INHSGLIQNLKSLKSFIVPNTGELAIE 456 (511)
Q Consensus 382 gV~d~L~-~~g~~-v~~v~~~~~~~~~~~y--~N~rae~~~~~re~l~~g~l-~~d~~l~~el~~~~~~~~~~~gki~ie 456 (511)
++++.|. +.+++ +.. .+..+.... .+.|..+.-+++++|+.+.+ +++..+++||.+-- ..+|+..-
T Consensus 130 ~v~~~l~~~~~Y~Nl~~----~~~~~~Gf~TT~~sK~~~~~~Lk~lie~~~l~i~s~~lI~EL~tFv----~~~gs~~A- 200 (232)
T 3c6a_A 130 SIAKSLAMDLEYDNIIC----DSFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRTFS----EKGVSWAA- 200 (232)
T ss_dssp HHHHHHHHTSCCCCBCC----SBTTBSSBCCCHHHHHHHHHHHHHHHHTTCEECCCHHHHHHHHHCB----SCC------
T ss_pred HHHHHHHHHHCCCCCCC----CCCCCCCCEECCCCHHHHHHHHHHHHHHCCEEECCHHHHHHHHHEE----ECCCEECC-
T ss_conf 99999988744773024----2445667443420199999999999971854988899998846316----43977646-
Q ss_pred ECHHHCCCCCCHHHHHHHH
Q ss_conf 4125489998989999999
Q gi|254781215|r 457 SKRVKGAKSTDYSDGLMYT 475 (511)
Q Consensus 457 ~Kkkrg~~SPD~ADAl~l~ 475 (511)
.-|.+=|+-=|++|+
T Consensus 201 ----~~G~HDDlVMalaL~ 215 (232)
T 3c6a_A 201 ----EEGFHDDLVMSLVIF 215 (232)
T ss_dssp -------CCCHHHHHHHHH
T ss_pred ----CCCCCHHHHHHHHHH
T ss_conf ----899971999999999