HHsearch results for GI: 254781215 and protein with PDBid: 3c6a_A

>3c6a_A Terminase large subunit; terminase nuclease, viral protein; 1.16A {Enterobacteria phage RB49} PDB: 3c6h_A
Probab=99.20  E-value=5.4e-10  Score=80.28  Aligned_cols=156  Identities=19%  Similarity=0.193  Sum_probs=110.6

Q ss_pred             HCCCCCCCCCEEEEEEECCCC-CCCCEEEEEECCC----EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCH
Q ss_conf             076531899708999623334-7841799982275----58998732778988999999999986188829980068763
Q gi|254781215|r  307 NREPCPDPYAPLIMGCDIAEE-GGDNTVVVLRRGP----VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA  381 (511)
Q Consensus       307 ~r~~~~~~~~~~viGvDVAr~-G~D~svi~~r~G~----~v~~~~~~~~~d~~~~a~~i~~~~~~~~~~~i~iD~~GvG~  381 (511)
                      ..+..|.++..+++|||||++ |.|.|||.+.+-.    ........+..++..++..+..++..|++..++|+.++.|.
T Consensus        50 ~iwe~P~~g~~YvigvD~A~G~g~DyS~i~V~Dvt~~~~~qVA~~r~n~i~p~~~a~ii~~i~~~Yn~a~v~vE~Nn~G~  129 (232)
T 3c6a_A           50 YQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITEFPYKQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGV  129 (232)
T ss_dssp             EESSCCCTTCCEEEEEECCCSSSSCCEEEEEEECSSSSEEEEEEEEESCCCTTTHHHHHHHHHHHTTSCCEEEBCSHHHH
T ss_pred             EEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf             89936899984999997478768887879999767987148999740366878999999999987055739999778679


Q ss_pred             HHHHHHH-HCCCE-EEEECCCCCCCCHHHH--HHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHCCCEEEECCCCEEEEE
Q ss_conf             6889898-64982-7984277776640255--22799999999999970899-981899999857967998799849998
Q gi|254781215|r  382 RTCDYLE-MLGYH-VYRVLGQKRAVDLEFC--RNRRTELHVKMADWLEFASL-INHSGLIQNLKSLKSFIVPNTGELAIE  456 (511)
Q Consensus       382 gV~d~L~-~~g~~-v~~v~~~~~~~~~~~y--~N~rae~~~~~re~l~~g~l-~~d~~l~~el~~~~~~~~~~~gki~ie  456 (511)
                      ++++.|. +.+++ +..    .+..+....  .+.|..+.-+++++|+.+.+ +++..+++||.+--    ..+|+..- 
T Consensus       130 ~v~~~l~~~~~Y~Nl~~----~~~~~~Gf~TT~~sK~~~~~~Lk~lie~~~l~i~s~~lI~EL~tFv----~~~gs~~A-  200 (232)
T 3c6a_A          130 SIAKSLAMDLEYDNIIC----DSFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRTFS----EKGVSWAA-  200 (232)
T ss_dssp             HHHHHHHHTSCCCCBCC----SBTTBSSBCCCHHHHHHHHHHHHHHHHTTCEECCCHHHHHHHHHCB----SCC------
T ss_pred             HHHHHHHHHHCCCCCCC----CCCCCCCCEECCCCHHHHHHHHHHHHHHCCEEECCHHHHHHHHHEE----ECCCEECC-
T ss_conf             99999988744773024----2445667443420199999999999971854988899998846316----43977646-


Q ss_pred             ECHHHCCCCCCHHHHHHHH
Q ss_conf             4125489998989999999
Q gi|254781215|r  457 SKRVKGAKSTDYSDGLMYT  475 (511)
Q Consensus       457 ~Kkkrg~~SPD~ADAl~l~  475 (511)
                          .-|.+=|+-=|++|+
T Consensus       201 ----~~G~HDDlVMalaL~  215 (232)
T 3c6a_A          201 ----EEGFHDDLVMSLVIF  215 (232)
T ss_dssp             -------CCCHHHHHHHHH
T ss_pred             ----CCCCCHHHHHHHHHH
T ss_conf             ----899971999999999