HHsearch results for GI: 254781215 and protein with PDBid: 3dkp_A
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural genomics consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.15 E-value=2.1e-05 Score=51.35 Aligned_cols=74 Identities=20% Similarity=0.225 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980--89966999808589999999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTL 124 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~--~p~~kv~vtApt~~Q~~~il 124 (511)
+|..|-+.|++++..+-.. + -+.|.++.|+|||......++-.+.. ..+.++++++||..-+.++.
T Consensus 48 g~~~ptpiQ~~ai~~il~g------~------dviv~apTGsGKT~~~~~~il~~~~~~~~~~~~~lil~Ptr~La~q~~ 115 (245)
T 3dkp_A 48 GFQMPTPIQMQAIPVMLHG------R------ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIH 115 (245)
T ss_dssp TCCSCCHHHHHHHHHHHTT------C------CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCC------C------CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH
T ss_conf 9999999999999999779------9------889987999977589988988755420378846998588089864320
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q gi|254781215|r 125 WAEVSKWLS 133 (511)
Q Consensus 125 w~Ei~k~~~ 133 (511)
.++.+...
T Consensus 116 -~~~~~~~~ 123 (245)
T 3dkp_A 116 -RELIKISE 123 (245)
T ss_dssp -HHHHHHTT
T ss_pred -HHHEECCC
T ss_conf -12000122