HHsearch results for GI: 254781215 and protein with PDBid: 3dmq_A
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.86 E-value=0.00029 Score=44.14 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHH
Q ss_conf 8458999999999998740565554210124650257659789999999999980899669998085899999999-999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW-AEV 128 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw-~Ei 128 (511)
.|.+.|.+++..+... + ..|+-++--=|.|||.-+..++...+...+..+++|++|+.-. .- | .|+
T Consensus 153 ~l~phQ~~~~~~~l~~-------~---~~r~LLADevGlGKTiea~~il~~l~~~g~~~r~LIvvP~sL~--~Q-W~~El 219 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRR-------H---APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQ--HQ-WLVEM 219 (968)
T ss_dssp CCCHHHHHHHHHHHHS-------S---SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTH--HH-HHHHH
T ss_pred CCCHHHHHHHHHHHHC-------C---CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHH--HH-HHHHH
T ss_conf 8775899999999847-------8---9999988789811999999999999983899949999887889--99-99999
Q ss_pred HHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCH---
Q ss_conf 99998550001344432222223334443211123578616985303575561002120267614999711102997---
Q gi|254781215|r 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--- 205 (511)
Q Consensus 129 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d--- 205 (511)
.++...... .............. ..........++....-..+.....-+......++|+|||+.+..
T Consensus 220 ~~~f~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~vi~s~~~l~~~~~~~~~l~~~~~dlvIvDEAH~l~n~~~ 290 (968)
T 3dmq_A 220 LRRFNLRFA-----LFDDERYAEAQHDA----YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSED 290 (968)
T ss_dssp HHHSCCCCE-----ECCHHHHHHHHHTT----CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTT
T ss_pred HHHCCCCEE-----EEECCCHHHHHHHH----HHHHCCCCEEEEEHHHHHCCHHHHHHHHCCCCCEEEEECHHHHCCCCC
T ss_conf 997399869-----98246426676765----423105999997289984089999887357988899836665316664
Q ss_pred ---HHHHHHHHHHCCCCCCEEEEEECCCCCC
Q ss_conf ---8898888885079981389982389987
Q gi|254781215|r 206 ---VINLGILGFLTERNANRFWIMTSNPRRL 233 (511)
Q Consensus 206 ---~i~e~i~~~Lt~~g~~~~~i~~~nP~~~ 233 (511)
..+..+... +.. .+..++++++|..+
T Consensus 291 ~~s~~~~~~~~l-~~~-~~~~llLTaTP~~n 319 (968)
T 3dmq_A 291 APSREYQAIEQL-AEH-VPGVLLLTATPEQL 319 (968)
T ss_dssp BCCHHHHHHHHH-HTT-CSSEEESCSSCSSS
T ss_pred HHHHHHHHHHHH-HHC-CCEEEEEECCCCCC
T ss_conf 888999999987-530-46289841425778