HHsearch results for GI: 254781215 and protein with PDBid: 3e1s_A
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.92 E-value=6.7e-05 Score=48.12 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 84589999999999987405655542101246502576597899999999999808996699980858999999999999
Q gi|254781215|r 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129 (511)
Q Consensus 50 ~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p~~kv~vtApt~~Q~~~ilw~Ei~ 129 (511)
+..+.|++++..+..+. -+.|..|=|+|||+++..++-.+-. .+.+|+++|||-.-++.+ .|..
T Consensus 189 ~l~~~Q~~Av~~~~~~~------------~~~i~G~aGTGKTt~l~~i~~~~~~--~~~~v~~~ApTgkAA~~L--~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHR------------LVVLTGGPGTGKSTTTKAVADLAES--LGLEVGLCAPTGKAARRL--GEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCS------------EEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHH--HHHH
T ss_pred CCCHHHHHHHHHHHCCC------------EEEEECCCCCHHHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHH--HHHH
T ss_conf 77899999999970598------------8999899860099999999999986--798499878729999999--8742
Q ss_pred HHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCHHCCCHHHHH
Q ss_conf 99985500013444322222233344432111235786169853035755610021202676149997111029978898
Q gi|254781215|r 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209 (511)
Q Consensus 130 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e 209 (511)
. ..+..+... +...... + .....++ ....++|+||||.|+...+.
T Consensus 253 ---~---------~~a~Tih~~----------L~~~~~~-~----~~~~~~~--------~~~dvlIIDEaSMv~~~~~~ 297 (574)
T 3e1s_A 253 ---G---------RTASTVHRL----------LGYGPQG-F----RHNHLEP--------APYDLLIVDEVSMMGDALML 297 (574)
T ss_dssp ---T---------SCEEEHHHH----------TTEETTE-E----SCSSSSC--------CSCSEEEECCGGGCCHHHHH
T ss_pred ---C---------CCHHHHHHH----------HCCCCCC-C----CCCCCCC--------CCCCEEEEECCCCCHHHHHH
T ss_conf ---8---------773889998----------6059763-2----1011576--------65868999266622399999
Q ss_pred HHHHHHCCCCCCEEEEEECCC-----CCCCCHHHHHHH
Q ss_conf 888885079981389982389-----987655676530
Q gi|254781215|r 210 GILGFLTERNANRFWIMTSNP-----RRLSGKFYEIFN 242 (511)
Q Consensus 210 ~i~~~Lt~~g~~~~~i~~~nP-----~~~~g~fy~~~~ 242 (511)
.+..++. .+.+ ++..|-| -+....|.+...
T Consensus 298 ~Ll~a~~-~g~r--lIlvGD~~QLppV~~G~~~~~l~~ 332 (574)
T 3e1s_A 298 SLLAAVP-PGAR--VLLVGDTDQLPPVDAGLPLLALAQ 332 (574)
T ss_dssp HHHTTSC-TTCE--EEEEECTTSCCCSSSCCHHHHHHH
T ss_pred HHHHHCC-CCCE--EEEECCHHHCCCCCCCCHHHHHHH
T ss_conf 9986453-6887--985068675477556847898851