HHsearch results for GI: 254781215 and protein with PDBid: 3h1t_A
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.69 E-value=1.5e-06 Score=58.50 Aligned_cols=179 Identities=17% Similarity=0.110 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 66528866776421455777565557845899999999999874056555421012465025765978999999999998
Q gi|254781215|r 24 IKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS 103 (511)
Q Consensus 24 ~~~~~~~~~~~~~~w~~~~~~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~ 103 (511)
..+..+.+.+.-| .......||.||.++++.+.++..++.. |..|....|+|||.++..++...+.
T Consensus 159 ~~~~~~~~~~~~~-------~~~~~~~~R~yQ~~Ai~~~~~~~~~~~~-------r~li~~aTGSGKT~~a~~li~~ll~ 224 (590)
T 3h1t_A 159 IKDEDLDTLLSPY-------HHVSGYSPRYYQQIAINRAVQSVLQGKK-------RSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp CCGGGHHHHTCCC-------CCC----CCHHHHHHHHHHHHHHHTTCS-------EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHCCC-------CEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4667776541555-------4457998679999999999999983799-------6599889999789999999999998
Q ss_pred HC-------CCCEEEEEECCHHHHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 08-------99669998085899999999999999985500013444322222233344432111235786169853035
Q gi|254781215|r 104 TR-------PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176 (511)
Q Consensus 104 ~~-------p~~kv~vtApt~~Q~~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (511)
.+ ...++++.+|+..-+.+. ...... .+......+.. ..........+.+..+.
T Consensus 225 ~~~~~~~~~~~~rvl~l~dr~~L~~Q~--------~~~~~~--~~~~~~~~i~~---------~~~~~~~~~~~~t~q~l 285 (590)
T 3h1t_A 225 ARWNRTGDYRKPRILFLADRNVLVDDP--------KDKTFT--PFGDARHKIEG---------GKVVKSREIYFAIYQSI 285 (590)
T ss_dssp TTCCSSCSSSCCCEEEEEC-------------------CCT--TTCSSEEECCC-----------CCSSCSEEEEEGGGC
T ss_pred HCCCCCCCCCCCEEEEEECHHHHHHHH--------HHHHHH--HCCCCCEEEEC---------CCCCCCCCEEEEEEEEE
T ss_conf 411322345688699995369999989--------999974--13665402211---------44235663157766672
Q ss_pred CC--CCCCHHHHCCCCCCEEEEECCHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 75--561002120267614999711102997889888888507998138998238998765
Q gi|254781215|r 177 SE--ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235 (511)
Q Consensus 177 s~--~~~ea~~G~h~~~~~lvI~DEAsgI~d~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g 235 (511)
.. ..+....-+-.....++|+|||+-....-.......+....+..++-.+++|.+..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~lIIiDEaHr~~~~~~~~~~~il~~~~~a~~lGlTATP~~~~~ 346 (590)
T 3h1t_A 286 ASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDN 346 (590)
T ss_dssp ------CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTT
T ss_pred HHHHHCHHHHHHCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCC
T ss_conf 0222011356542755516999604774032321157788876434451322446522367