HHsearch results for GI: 254781215 and protein with PDBid: 3i5x_A
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A*
Probab=97.69 E-value=0.00037 Score=43.44 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----CCCCEEEEEECCHHHHH
Q ss_conf 5578458999999999998740565554210124650257659789999999999980-----89966999808589999
Q gi|254781215|r 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-----RPGISVICLANSETQLK 121 (511)
Q Consensus 47 ~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~-----~p~~kv~vtApt~~Q~~ 121 (511)
+|..|.+-|++++..+-. +.+ .-+.|.|..|+|||.....-++-.++. ..+.++++++||...+.
T Consensus 91 gf~~~t~iQ~~ai~~il~----g~~------~dvlv~ApTGSGKTlay~lP~l~~l~~~~~~~~~~~~~lil~PtreLa~ 160 (563)
T 3i5x_A 91 EFPGLTPVQQKTIKPILS----SED------HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLAL 160 (563)
T ss_dssp CCSSCCHHHHHHHHHHHS----SSS------EEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHC----CCC------CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHH
T ss_conf 999999999999999976----999------9889988998509999999999999844435678848999815599999
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999855
Q gi|254781215|r 122 TTLWAEVSKWLSLL 135 (511)
Q Consensus 122 ~ilw~Ei~k~~~~~ 135 (511)
++ ..++.++....
T Consensus 161 Qi-~~~~~~~~~~~ 173 (563)
T 3i5x_A 161 QI-EAEVKKIHDMN 173 (563)
T ss_dssp HH-HHHHHHHHHHC
T ss_pred HH-HHHHHHHHHHC
T ss_conf 99-99999998632