HHsearch results for GI: 254781215 and protein with PDBid: 3llm_A

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.11  E-value=0.013  Score=33.79  Aligned_cols=164  Identities=12%  Similarity=0.053  Sum_probs=83.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEEEECCHHHH
Q ss_conf             565557845899999999999874056555421012465025765978999999999998089---96699980858999
Q gi|254781215|r   44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP---GISVICLANSETQL  120 (511)
Q Consensus        44 ~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p---~~kv~vtApt~~Q~  120 (511)
                      .|+.+.    .+.++|+.|..|.            -+-|.++.|+|||+..-.+++.......   .++|+||-|..--+
T Consensus        59 ~LPi~~----~~~~il~~i~~n~------------vvvV~G~TGsGKSTqiPq~Lle~~~~~~~~~~~~I~~tqPRR~aa  122 (235)
T 3llm_A           59 LLPVKK----FESEILEAISQNS------------VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISA  122 (235)
T ss_dssp             TSGGGG----GHHHHHHHHHHCS------------EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHH
T ss_pred             HCCCHH----HHHHHHHHHHHCC------------EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH
T ss_conf             499168----8999999999799------------799993898999999999999867642788886599963737999


Q ss_pred             HHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCH
Q ss_conf             99999999999985500013444322222233344432111235786169853035755610021202676149997111
Q gi|254781215|r  121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA  200 (511)
Q Consensus       121 ~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEA  200 (511)
                      ..+     ++........   .....    .+|....+...........|++.--.-...   ...+. . ...+|+||+
T Consensus       123 ~s~-----A~rva~e~~~---~~G~~----vGy~ir~e~~~~~~~t~i~y~T~g~lLr~~---~~~L~-~-~s~IIiDEv  185 (235)
T 3llm_A          123 VSV-----AERVAFERGE---EPGKS----CGYSVRFESILPRPHASIMFCTVGVLLRKL---EAGIR-G-ISHVIVDEI  185 (235)
T ss_dssp             HHH-----HHHHHHTTTC---CTTSS----EEEEETTEEECCCSSSEEEEEEHHHHHHHH---HHCCT-T-CCEEEECCT
T ss_pred             HHH-----HHHHHHHHCC---CCCCE----ECEEEECCCCCCCCCCEEEECCCCEEEECC---CCCCC-C-CCCEECCHH
T ss_conf             999-----9999998289---99986----051786674468887147860302000011---03455-5-312000057


Q ss_pred             HCCC---HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf             0299---78898888885079981389982389987655676530
Q gi|254781215|r  201 SGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN  242 (511)
Q Consensus       201 sgI~---d~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~~~  242 (511)
                      +--+   |.+.-.+.-.+... ...+++.+|-.- ....|-+.|.
T Consensus       186 HERs~~tD~lL~llk~~~~~~-~~lklIlmSATl-d~~~f~~yF~  228 (235)
T 3llm_A          186 HERDINTDFLLVVLRDVVQAY-PEVRIVLMSATI-DTSMFCEYFF  228 (235)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSS-CCHHHHHHTT
T ss_pred             HHCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCC-CHHHHHHHCC
T ss_conf             644613899999999999778-996799976878-9699998769