HHsearch results for GI: 254781215 and protein with PDBid: 3llm_A
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.11 E-value=0.013 Score=33.79 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=83.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEEEECCHHHH
Q ss_conf 565557845899999999999874056555421012465025765978999999999998089---96699980858999
Q gi|254781215|r 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP---GISVICLANSETQL 120 (511)
Q Consensus 44 ~~~~~~~P~~WQ~e~l~~i~~~~~~~~~~~~~~~~r~aV~sgrG~GKS~l~a~l~lw~l~~~p---~~kv~vtApt~~Q~ 120 (511)
.|+.+. .+.++|+.|..|. -+-|.++.|+|||+..-.+++....... .++|+||-|..--+
T Consensus 59 ~LPi~~----~~~~il~~i~~n~------------vvvV~G~TGsGKSTqiPq~Lle~~~~~~~~~~~~I~~tqPRR~aa 122 (235)
T 3llm_A 59 LLPVKK----FESEILEAISQNS------------VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISA 122 (235)
T ss_dssp TSGGGG----GHHHHHHHHHHCS------------EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHH
T ss_pred HCCCHH----HHHHHHHHHHHCC------------EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH
T ss_conf 499168----8999999999799------------799993898999999999999867642788886599963737999
Q ss_pred HHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCH
Q ss_conf 99999999999985500013444322222233344432111235786169853035755610021202676149997111
Q gi|254781215|r 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200 (511)
Q Consensus 121 ~~ilw~Ei~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ea~~G~h~~~~~lvI~DEA 200 (511)
..+ ++........ ..... .+|....+...........|++.--.-... ...+. . ...+|+||+
T Consensus 123 ~s~-----A~rva~e~~~---~~G~~----vGy~ir~e~~~~~~~t~i~y~T~g~lLr~~---~~~L~-~-~s~IIiDEv 185 (235)
T 3llm_A 123 VSV-----AERVAFERGE---EPGKS----CGYSVRFESILPRPHASIMFCTVGVLLRKL---EAGIR-G-ISHVIVDEI 185 (235)
T ss_dssp HHH-----HHHHHHTTTC---CTTSS----EEEEETTEEECCCSSSEEEEEEHHHHHHHH---HHCCT-T-CCEEEECCT
T ss_pred HHH-----HHHHHHHHCC---CCCCE----ECEEEECCCCCCCCCCEEEECCCCEEEECC---CCCCC-C-CCCEECCHH
T ss_conf 999-----9999998289---99986----051786674468887147860302000011---03455-5-312000057
Q ss_pred HCCC---HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHH
Q ss_conf 0299---78898888885079981389982389987655676530
Q gi|254781215|r 201 SGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242 (511)
Q Consensus 201 sgI~---d~i~e~i~~~Lt~~g~~~~~i~~~nP~~~~g~fy~~~~ 242 (511)
+--+ |.+.-.+.-.+... ...+++.+|-.- ....|-+.|.
T Consensus 186 HERs~~tD~lL~llk~~~~~~-~~lklIlmSATl-d~~~f~~yF~ 228 (235)
T 3llm_A 186 HERDINTDFLLVVLRDVVQAY-PEVRIVLMSATI-DTSMFCEYFF 228 (235)
T ss_dssp TSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSS-CCHHHHHHTT
T ss_pred HHCCHHHHHHHHHHHHHHHHC-CCCEEEEECCCC-CHHHHHHHCC
T ss_conf 644613899999999999778-996799976878-9699998769