BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781215|ref|YP_003065628.1| putative phage terminase,
large subunit [Candidatus Liberibacter asiaticus str. psy62]
(511 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040892|gb|ACT57688.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120680|gb|ADV02503.1| putative phage terminase large subunit [Liberibacter phage SC1]
gi|317120824|gb|ADV02645.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 511
Score = 1066 bits (2757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME
Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL
Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI
Sbjct: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM
Sbjct: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP
Sbjct: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
Query: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR 511
PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR
Sbjct: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR 511
>gi|315121940|ref|YP_004062429.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495342|gb|ADR51941.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/508 (74%), Positives = 428/508 (84%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M+RELPT E EQ+L +LM+SD+IKLSF+NFVL FPW E T L FS PR WQL+FME
Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VD CL +V+NP+P++FKGA+SAGRGIGKTTLNAW++LWL+STRPG+S++CLANSETQL
Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K+TLWAEVSKWLS+LPNKHWFEMQSLSLHPA WY++ L + GIDSKHY+ CRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAI NDEASGTPDVIN ILGF TE NANRFW+MTSNPRRL G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLKGWFYDI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FN PL+DW+RFQIDTRTVEGIDPSFHEGII+RYGLDSDVTRVEV GQFPQQDI+SFIP
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPSFHEGIISRYGLDSDVTRVEVLGQFPQQDINSFIPFY 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
IEEALNREP DPYAPLIMGCDIA EGGDNTVVVLRRG IEH+FDWS + ++ KI
Sbjct: 301 RIEEALNREPIKDPYAPLIMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNASSRKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
L+ KY+PDA+++DAN G +T YL GY V+ GQ RA D E RNRRTELHVKM
Sbjct: 361 EELINKYKPDAVVVDANGIGVQTYYYLADEGYSVHAEKGQNRADDHESYRNRRTELHVKM 420
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
A+WLE AS+ NHSGLIQNLKSL+SFI PNTG+LA+ESKRVKGA STDYSD L YTFA +P
Sbjct: 421 AEWLELASIPNHSGLIQNLKSLESFIEPNTGKLALESKRVKGAVSTDYSDALAYTFAVSP 480
Query: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEY 508
RSDM+FGRC SYQYE +LL++RRF Y
Sbjct: 481 ARSDMNFGRCRSYQYEADELLVDRRFSY 508
>gi|315122902|ref|YP_004063391.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496304|gb|ADR52903.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/508 (73%), Positives = 428/508 (84%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M+RELPT E EQ+L +LM+SD+IKLSF+NFVL FPW E T L FS PR WQL+FME
Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VD CL +V+NP+P++FKGA+SAGRGIGKTTLNAW++LWL+STRPG+S++CLANSETQL
Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K+TLWAEVSKWLS+LPNKHWFEMQSLSLHPA WY++ L + GIDSKHY+ CRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAI NDEASGTPDVIN ILGF TE NANRFW+MTSNPRRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLNGWFYDI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FN PL+DW+RFQIDTRTVEGIDP+FHE IIARYGLDSDVTRVEV GQFPQQDI+SFIP
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPNFHENIIARYGLDSDVTRVEVLGQFPQQDINSFIPFY 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
IEEALNREP DPYAPL+MGCDIA EGGDNTVVVLRRG IEH+FDWS + ++ KI
Sbjct: 301 RIEEALNREPIKDPYAPLVMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNVSSRKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
L+ KY+PDA+++DAN G +T YL GY V+ GQ RA D E RNRRTELHVKM
Sbjct: 361 EELINKYKPDAVVVDANGIGVQTYYYLADEGYSVHPEKGQNRADDHESYRNRRTELHVKM 420
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
A+WLE AS+ +HSGLIQNLKSL+SFI PNTG+LA+ESKRVKGA STDYSD L YTFA +P
Sbjct: 421 AEWLELASIPHHSGLIQNLKSLESFIEPNTGKLALESKRVKGAVSTDYSDALAYTFAVSP 480
Query: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEY 508
RSDM+FGRC SYQYE +LL++RRF Y
Sbjct: 481 ARSDMNFGRCRSYQYEADELLVDRRFSY 508
>gi|317120722|gb|ADV02544.1| putative phage terminase large subunit [Liberibacter phage SC2]
gi|317120783|gb|ADV02604.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 516
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/512 (77%), Positives = 415/512 (81%), Gaps = 19/512 (3%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME
Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL
Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPQQ 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
I EAL R PDPYAPLIMGCDIA EG D TVVVLRRG +IE +FDWS + TN KI
Sbjct: 301 YIVEALERVAIPDPYAPLIMGCDIAGEGEDKTVVVLRRGNIIERIFDWSGELIEVTNRKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDY-LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
S L+ +Y PDAI+ID N G Y L M V +LGQ+R+ + E N R EL+
Sbjct: 361 SSLINRYNPDAIVIDGNGIGGTVVSYLLNMHHISVEVILGQRRSTEPEQYHNLRAELYDL 420
Query: 420 MADWLEFASLI--NHSGLIQNLKSLKSFIVPNTGELAIESKRVK----GAKSTDYSDGLM 473
M + + + LI LKS+KS I G L IE KR G +S D+ D L
Sbjct: 421 MRSAITGGLQLPDDCPDLINELKSIKS-ISDTLGRLLIEKKRQGRSEFGVRSPDFVDALC 479
Query: 474 YTFAENPPRSDMDFGRCPSYQ------YEGVD 499
YTFA +PPR D P YQ YE +D
Sbjct: 480 YTFAVDPPRKD-----NPLYQGQDISEYEALD 506
>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040864|gb|ACT57660.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 252/359 (70%), Positives = 299/359 (83%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M R + T+ + EQ+L +++ E LSF NFV+ FFPWG KG PLE FS P WQLEFME
Sbjct: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L S+GIDSKHY+ CRTYSEER
Sbjct: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVG HNT+GMA+ NDEASGTPD+IN ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FN PL+DWKR+QIDTRTVEGID FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP N
Sbjct: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
IEEA++RE D YAPLIMGCDIA EGGD TVVV RRG +IEH+FDWS ++ TN +
Sbjct: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
>gi|302120432|gb|ADK92426.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 255
Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/255 (98%), Positives = 254/255 (99%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
IGKTTLNAWLVLWLMS RPG+S+ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS
Sbjct: 1 IGKTTLNAWLVLWLMSIRPGMSIICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 60
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI
Sbjct: 61 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 120
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE 267
NLGILGFLTE+NANRFWIMTSNPRRLSGKFYEIFN+PLDDWKRFQIDTRTVEGIDPSFHE
Sbjct: 121 NLGILGFLTEQNANRFWIMTSNPRRLSGKFYEIFNRPLDDWKRFQIDTRTVEGIDPSFHE 180
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE
Sbjct: 181 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 240
Query: 328 GGDNTVVVLRRGPVI 342
GGDNTVVVLRRGPVI
Sbjct: 241 GGDNTVVVLRRGPVI 255
>gi|303328395|ref|ZP_07358832.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
gi|302861389|gb|EFL84326.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
Length = 500
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 147/469 (31%), Positives = 213/469 (45%), Gaps = 38/469 (8%)
Query: 30 NFVLHFFPWGEKGTPLEGF-SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGI 88
FVL FPWG G L + P WQ E + + S V + A+S+G G+
Sbjct: 31 GFVLFAFPWG--GGALADYPDGPDVWQREILRGMGEQL--STGASAASVIREAVSSGHGV 86
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GK+ L AW++LW MST + AN+E QLK WAE++KW L +WF+ + +L
Sbjct: 87 GKSALVAWIILWAMSTFSDTRGVVTANTENQLKGKTWAELAKWHRLCLCGYWFDCTATAL 146
Query: 149 ------HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT-YGMAIINDEAS 201
H W D++ +SE + F G HN + +I DEAS
Sbjct: 147 ISTQAGHEKTWRVDMV----------------AWSERNTEAFAGLHNKGRRVLLIFDEAS 190
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
PD I G LT+ + W NP R +G+F E F + W ++D+RT
Sbjct: 191 AIPDAIWEVSEGALTDADTEIIWCCFGNPTRNTGRFRECFGRYAHRWNTRRVDSRTAAMT 250
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY--APLI 319
D + + YG DSD RV V G+FP+ FI +I+ EA R PD Y AP I
Sbjct: 251 DKNQLAQWVEDYGEDSDFVRVRVRGEFPRAGDRQFISSDIVHEARGRSLKPDQYSFAPRI 310
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A G D +V+ R+G + D T ++ ++ D I +D
Sbjct: 311 LGVDVARSGSDQSVITRRQGLACLEQRKFRGLDTVTLAGIVAEECREWGADKIFVDGIGV 370
Query: 380 GARTCDYLEM---LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL-EFASLINHSGL 435
GA D L LG+ V + A+ E NRR E+ M WL E ++ + + L
Sbjct: 371 GAGVVDALRQVYGLGHLVVDAVAGATALQPERFLNRRAEMWTAMRKWLAEGGAVPDDAEL 430
Query: 436 IQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPP 481
+ L L+ + V +G+L +ESK + +G S D +D L TF P
Sbjct: 431 AEQLCGLE-YAVTVSGKLKLESKDDMKARGLTSPDCADALALTFYAPVP 478
>gi|268589373|ref|ZP_06123594.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
gi|291315400|gb|EFE55853.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
Length = 493
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 144/462 (31%), Positives = 216/462 (46%), Gaps = 36/462 (7%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
++ L+ FPWGE GT LE + PR WQ E + + H N P + A ++G GIG
Sbjct: 24 SYALYAFPWGEAGTELENANGPRQWQAEALNEIGEHLRNPETRHQP--LQLARASGHGIG 81
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL- 148
K+ + ++ W M T V+ AN+E QL+T W E++KW L K WF ++
Sbjct: 82 KSAFISMIIKWGMDTCEDCKVVVTANTENQLRTKTWPEIAKWQRLSITKDWFTYTKTAIY 141
Query: 149 -----HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI-INDEASG 202
H W +D + +SE + F G HN I I DEAS
Sbjct: 142 SNDPNHANAWRADAV----------------PWSENNTEAFAGLHNQGKRIILIFDEASN 185
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
D++ G LT+ N WI NP R +G+F E F K WK QID+RTVEG +
Sbjct: 186 IADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFRKFKHRWKTKQIDSRTVEGTN 245
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIM 320
E I YG+D D +V V G FP FIP + + A+ R +AP+I+
Sbjct: 246 KEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLTDAAMKRTVTQAEVSHAPIII 305
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT-DLRTTNNKISGLVEKYRPDAIIID-ANN 378
G D A G D+ V+ LR+G + L+ SKT D +I+ ++Y DA+ ID
Sbjct: 306 GVDPAYSGDDDAVIYLRQGLHSKCLWTGSKTIDDVIMAKRIADFEDQYGADAVHIDFGYG 365
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
TG ++ + + + G + RN+R E++ + WL+ I+ + ++
Sbjct: 366 TGIQSVGMNWGRNWQLVQFNGASTDPQM---RNKRGEMYNNVKSWLKIGGAIDDQEVAED 422
Query: 439 LKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
L S + V +G++ +ESK + + +S D L TFA
Sbjct: 423 L-STPEYKVELSGKILLESKDDIKKRIGRSPGKGDALALTFA 463
>gi|167032754|ref|YP_001667985.1| putative phage terminase large subunit [Pseudomonas putida GB-1]
gi|166859242|gb|ABY97649.1| putative phage terminase, large subunit [Pseudomonas putida GB-1]
Length = 499
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 142/465 (30%), Positives = 222/465 (47%), Gaps = 27/465 (5%)
Query: 27 SFSN----FVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
SFS+ +VL+ FPWGE G L + PR WQ E +E + L + EV + A+
Sbjct: 20 SFSDDPLGYVLYAFPWGEAGGELANKTGPRKWQREVLESI-GEQLRAGAKDRGEVIREAV 78
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
++G GIGK+ L +W++ W + T + AN+E+QL+T W EV+KW L HWF+
Sbjct: 79 ASGHGIGKSALVSWVIKWALDTEVDTRGVVTANTESQLRTKTWPEVAKWNRLSITAHWFK 138
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT-YGMAIINDEAS 201
+ +L +D H K++ +S+ + F G HN + +I DEAS
Sbjct: 139 LTGTALIS----TDPDH------EKNWRIDAVPWSDTNTEAFAGLHNEGKRILLIFDEAS 188
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
D++ G LT+ + W NP R SG+F E F K W+ Q+D+RTV+G
Sbjct: 189 AIADLVWEVAEGALTDADTEIIWAAFGNPTRNSGRFRECFTKFKHRWRHRQVDSRTVDGT 248
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
+ + IA YG DSD R+ V G FP+ IP + + EA+ R+ L+ G
Sbjct: 249 NKTQIAKWIADYGEDSDFVRIRVRGMFPRASDLQLIPTDWVAEAMRRDGVYGLDDALVCG 308
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHL--FDWSKTDLRTTN---NKISGLVEKYRPDAIIIDA 376
DIA G DN V+ RRG + + ++ R T K+ LV ++RPDA+ +D+
Sbjct: 309 IDIARGGMDNNVIRFRRGMDAKSIKPIKIPGSETRNTTPFIAKVCTLVVEHRPDAVFVDS 368
Query: 377 NNTGARTCDYLEML--GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
G D L L G + V +A D + N RT + +M + ++ I
Sbjct: 369 TGVGGPVADQLRRLLPGVMIIDVNFASQAPDRHYA-NMRTYIWWRMREAIKLGLAIESDT 427
Query: 435 LIQNLKSLKSFIVPNTGELAIESKRVKGAK---STDYSDGLMYTF 476
++ + + ++ ++A+E K+ + S D D L TF
Sbjct: 428 ELETELTSPEYDHNSSDQIALEKKKDIKKRLGISPDDGDALALTF 472
>gi|212710820|ref|ZP_03318948.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
30120]
gi|212686517|gb|EEB46045.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
30120]
Length = 493
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/462 (30%), Positives = 214/462 (46%), Gaps = 36/462 (7%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
++ L+ FPWGE GT LE S PR WQ E + + H N P + A ++G GIG
Sbjct: 24 SYALYAFPWGEAGTELENASGPRQWQAEALNEIGEHLRNPETRHQP--LQLARASGHGIG 81
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL- 148
K+ + ++ W M T V+ AN+E QL+T W E++KW L K WF ++
Sbjct: 82 KSAFISMIIKWGMDTCEDCKVVVTANTENQLRTKTWPEIAKWQRLSITKDWFTCTKTAIY 141
Query: 149 -----HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI-INDEASG 202
H W +D + +SE + F G HN I + DEAS
Sbjct: 142 SNDPNHANAWRADAV----------------PWSENNTEAFAGLHNQGKRIILVFDEASN 185
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
D++ G LT+ N WI NP R +G+F E F K WK QID+RTVEG +
Sbjct: 186 IADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFRKFKHRWKTKQIDSRTVEGTN 245
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIM 320
E I YG+D D +V V G FP FIP + + A+ R +AP+I+
Sbjct: 246 KEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLTDAAMKRTVTQAEVSHAPIIL 305
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT-DLRTTNNKISGLVEKYRPDAIIID-ANN 378
G D A G D+ V+ LR+G + L+ SKT D +I+ ++Y DA+ ID
Sbjct: 306 GVDPAYSGDDDAVIYLRQGLHSKCLWTGSKTIDDVIMAKRIADYEDQYGADAVHIDFGYG 365
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
TG ++ + + G ++ N+R E++ + WL+ I+ + +
Sbjct: 366 TGIQSVGMNWGRNWQLVSFNGASTDPQMQ---NKRGEMYNNVKSWLKIGGAIDDQEVADD 422
Query: 439 LKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
L S + V +G++ +E K + + +S + D L TFA
Sbjct: 423 L-STPEYKVQLSGKILLEKKEDIKKRIGRSPNKGDALALTFA 463
>gi|290968649|ref|ZP_06560187.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
gi|290781302|gb|EFD93892.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
Length = 487
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 230/463 (49%), Gaps = 45/463 (9%)
Query: 31 FVLHFFPWGEKGTPLEGFSAPRSWQLEFM-EVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
FV F W + L+G P++WQ++ + EV + L++ + A ++G GIG
Sbjct: 22 FVYFAFDWDSE--ELKG-QNPQTWQIKTLKEVGEGLSLSTA-------LQHATASGHGIG 71
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL- 148
K+ L AWL+LW +STRP + AN+ TQL+T WAE+SKW L K +F + S ++
Sbjct: 72 KSALVAWLILWAISTRPDTRGVVTANTATQLETKTWAELSKWYHLFRGKKFFTLTSTAIF 131
Query: 149 -----HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASG 202
H W D + S+ +R ++F G HN + +I DEAS
Sbjct: 132 CRQEGHERTWRIDAIPWSV----------------DRTESFAGLHNQGNRLLLIFDEASA 175
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
+ I G LT+++ W++ NP R +G+F++ F+K W +ID+RTV+ +
Sbjct: 176 IDNKIWEVAEGALTDKDTEILWLVFGNPTRSTGRFFDCFHKYKKSWITQKIDSRTVDISN 235
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP---YAPLI 319
+ + I YG+DSD +V V G+FP FI I+ A R P +AP I
Sbjct: 236 KTQLQKWIQTYGIDSDFVKVRVLGEFPDTSDTQFISTAIVRTAWERRPLRTAEYDFAPCI 295
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR-TTNNKISGLVEKYRPDAIIIDANN 378
+G D A GGD+TV+ LR+G E L ++ + D +++ +KY DA+ ID
Sbjct: 296 IGMDPAWTGGDSTVIFLRQGFFSEKLAEYKQNDNDGVMAARLAEFEDKYHADAVFID-KG 354
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH-SGLIQ 437
G + +G +R++ + N+R E+ M +WL+ +I GLI+
Sbjct: 355 YGTGIYSFGVTMGRQ-WRLVSFAEKSGAQAYANKRAEMWGNMKEWLQEGGVIPQVDGLIE 413
Query: 438 NLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
L + ++FI GE+ +E K + +G +S + +D L TFA
Sbjct: 414 ELTAPQAFINAR-GEIQLEKKEDMKKRGIESPNMADALALTFA 455
>gi|323156136|gb|EFZ42295.1| terminase large subunit [Escherichia coli EPECa14]
Length = 491
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 217/456 (47%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A+++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPATRYQPLML--ALASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D+ H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDLGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R YAP+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAYAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTWLRLGGMLDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|304398406|ref|ZP_07380280.1| terminase, large subunit [Pantoea sp. aB]
gi|304354272|gb|EFM18645.1| terminase, large subunit [Pantoea sp. aB]
Length = 490
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 215/456 (47%), Gaps = 23/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L PR WQ + + + AH N P + A +G GIG
Sbjct: 24 GYALYAFPWGEEGTDLAYSKGPRQWQEDAFKQIGAHLQNPDTRHQPLMIGRA--SGHGIG 81
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + LV W M T V+ AN+E QL+T W E++KW L + WF + +++
Sbjct: 82 KSAFISMLVKWGMDTCEDCKVVVTANTENQLRTKTWPEIAKWQRLSITQDWFTCTATAIY 141
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI-INDEASGTPDVIN 208
+D H +K + +SE + F G HN I I DEAS D++
Sbjct: 142 S----NDPSH------AKSWRADAIPWSENNTEAFAGLHNERKRIILIFDEASNIADLVW 191
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ N W+ NP R +G+F E F K WK QID+R+VEG + +
Sbjct: 192 EVAEGALTDENTEIIWVAFGNPTRNTGRFRECFRKLRHRWKTAQIDSRSVEGTNKEQIQK 251
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMGCDIAE 326
+ YG DSD +V V G FP FIP + + A+ R P +A ++G D A
Sbjct: 252 WVDDYGEDSDFVKVRVRGLFPSASEAQFIPTGLTDAAVGRVITPGQVAHAATVIGVDPAH 311
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI-SGLVEKYRPDAIIID-ANNTGARTC 384
+GGD V+ LR+G + L ++ +T KI + ++YR DA+ ID TG ++
Sbjct: 312 QGGDPAVIYLRQGLHTKKLGEYQRTTDDVLFAKIVASFEDEYRADAVFIDYGYGTGLKSV 371
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ + + G + D + N+R E++ + WL+ ++ + + L + +
Sbjct: 372 GDNWGRNWQLIQFGGG--STDPQMA-NKRGEMYNAVKTWLKDGGQLDSQQVAEELSAAEY 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ + +E K + + KS + +D L TFA
Sbjct: 429 KVRLKDSRIVLEDKTSIKERLGKSPNDADALALTFA 464
>gi|320175050|gb|EFW50163.1| terminase B protein, putative [Shigella dysenteriae CDC 74-1112]
Length = 480
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 216/456 (47%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 14 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 71
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 72 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 131
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 132 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 181
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 182 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQLQK 241
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 242 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 301
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 302 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 361
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ + WL +++ +L S
Sbjct: 362 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFISCKTWLRLGGMLDDQETADDL-SAAE 417
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 418 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 453
>gi|332344357|gb|AEE57691.1| terminase, large subunit [Escherichia coli UMNK88]
Length = 491
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 215/456 (47%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQNPATRHQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTWLRLGGMLDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|327252187|gb|EGE63859.1| terminase large subunit [Escherichia coli STEC_7v]
Length = 491
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 215/456 (47%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPATRYQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTWLRLGGMLDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|324008564|gb|EGB77783.1| hypothetical protein HMPREF9532_01752 [Escherichia coli MS 57-2]
Length = 491
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 216/456 (47%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D+ H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDLGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTWLRLGGMLDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|300898423|ref|ZP_07116764.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|300357890|gb|EFJ73760.1| conserved hypothetical protein [Escherichia coli MS 198-1]
Length = 491
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 215/456 (47%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTWLRLGGMLDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|309702815|emb|CBJ02146.1| putative terminase, large subunit [Escherichia coli ETEC H10407]
Length = 493
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 133/472 (28%), Positives = 225/472 (47%), Gaps = 23/472 (4%)
Query: 31 FVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGK 90
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIGK
Sbjct: 26 YALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQNPATRHQPIML--ARASGHGIGK 83
Query: 91 TTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHP 150
+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKEWFTCTATAMYS 143
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVINL 209
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 144 ----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI 269
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKEQLQKW 253
Query: 270 IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAEE 327
+ YG DSD +V V G FP + FIP + + A+ R P +A +++G D + +
Sbjct: 254 VDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPAVGRVITPAQVQHAAVVLGVDPSHQ 313
Query: 328 GGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTCD 385
G D V+ LR+G + L +W + TD I+ ++Y+ DA+ ID TG ++
Sbjct: 314 GKDPAVIYLRQGLHCKKLGEWQRTTDDVLFAKVIADFEDQYQADAVFIDYGYGTGLKSVG 373
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSF 445
+ G + ++ D E N+R E++ D L+ + ++ L L + +
Sbjct: 374 --DNWGRNWTLIMFGSGTADPEMG-NKRGEMYKSARDALKLGAQLDSQELADELSAPEYK 430
Query: 446 I-VPNTGELAIESKRVKG--AKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQ 494
+ + ++ ++ + VK +S + +D + T+A + ++G+ S Q
Sbjct: 431 VRLKDSRKILQDKDEVKELLGRSPNNADAYVLTYAAPVTKKQFNYGQQQSQQ 482
>gi|298381721|ref|ZP_06991320.1| terminase large subunit protein [Escherichia coli FVEC1302]
gi|301019339|ref|ZP_07183525.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|298279163|gb|EFI20677.1| terminase large subunit protein [Escherichia coli FVEC1302]
gi|299882256|gb|EFI90467.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|323948690|gb|EGB44595.1| hypothetical protein ERKG_04913 [Escherichia coli H252]
Length = 491
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 215/456 (47%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTWLRLGGMLDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|218700994|ref|YP_002408623.1| putative phage terminase, large subunit [Escherichia coli IAI39]
gi|218370980|emb|CAR18807.1| putative phage terminase, large subunit [Escherichia coli IAI39]
Length = 491
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 215/456 (47%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTWLRLGGMLDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|294491573|gb|ADE90329.1| putative phage terminase, large subunit [Escherichia coli IHE3034]
Length = 491
Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 215/456 (47%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTWLRLGGMLDDQETADDL-STAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|301046412|ref|ZP_07193572.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300301638|gb|EFJ58023.1| conserved hypothetical protein [Escherichia coli MS 185-1]
Length = 491
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 214/456 (46%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEDGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTWLRLGGMLDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|330007152|ref|ZP_08305894.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
gi|328535499|gb|EGF61959.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
Length = 495
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 212/456 (46%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE GT L S PR WQ + + H N P + A +G GIG
Sbjct: 29 GYALYAFPWGEDGTELAHASGPRQWQADAFREIGEHLQNPATRHQPLMISRA--SGHGIG 86
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 87 KSAFISMLINWAMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKEWFTCTATAMY 146
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 147 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIVVVFDEASNIADLVW 196
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 197 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQLQK 256
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD +V V G FP FIP + +EA+ R +AP I+G D A
Sbjct: 257 WVDDYGEDSDFVKVRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPRIIGVDPAY 316
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 317 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 376
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL+ ++ +L S
Sbjct: 377 G--DGWGRTWQLVPFGGASADPQML-NKRGEMFNACKTWLKLGGALDDQETADDL-SAAE 432
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ +E K + + +S D L+ TFA
Sbjct: 433 YKVRVDGKIVMEPKEDIKERLGRSPGKGDALLLTFA 468
>gi|215487825|ref|YP_002330256.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|215265897|emb|CAS10306.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
Length = 493
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 133/472 (28%), Positives = 224/472 (47%), Gaps = 23/472 (4%)
Query: 31 FVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGK 90
+ L+ FPWGE GT L + PR WQ + + H N P + A ++G GIGK
Sbjct: 26 YALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQNPATRHQPLML--ARASGHGIGK 83
Query: 91 TTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHP 150
+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 84 SAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKEWFTCTATAMYS 143
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVINL 209
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 144 ----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVWE 193
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI 269
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 194 VAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQLQKW 253
Query: 270 IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAEE 327
+ YG DSD +V V G FP + FIP + + A+ R P +A +++G D + +
Sbjct: 254 VDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPAVGRVITPAQVQHAAVVLGVDPSHQ 313
Query: 328 GGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK-ISGLVEKYRPDAIIID-ANNTGARTCD 385
G D V+ LR+G + L +W +T K I+ ++Y+ DA+ ID TG ++
Sbjct: 314 GKDPAVIYLRQGLHCKKLGEWQRTTDDVLFAKIIADFEDQYQADAVFIDYGYGTGLKSVG 373
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSF 445
+ G + + D E N+R E++ D L+ + ++ L L + +
Sbjct: 374 --DNWGRNWTLIQFGSGTADPEMG-NKRGEMYKSARDALKLGAQLDSQNLADELSAPEYK 430
Query: 446 I-VPNTGELAIESKRVKG--AKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQ 494
+ + ++ ++ + + VK +S + +D + T+A + ++G+ S Q
Sbjct: 431 VRLKDSRKILQDKEEVKELLGRSPNDADAYVLTYAAPVTKKQFNYGQQQSQQ 482
>gi|331648179|ref|ZP_08349269.1| conserved hypothetical protein [Escherichia coli M605]
gi|331043039|gb|EGI15179.1| conserved hypothetical protein [Escherichia coli M605]
Length = 491
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 215/456 (47%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNACKIWLRLGGMLDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|117624715|ref|YP_853628.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
gi|115513839|gb|ABJ01914.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
Length = 491
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 215/456 (47%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD ++ V G FP FIP + +EA+ R ++P+I+G D A
Sbjct: 253 WVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHSPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTWLRLGGMLDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|30387381|ref|NP_848210.1| terminase large subunit [Enterobacteria phage epsilon15]
gi|30266036|gb|AAO06065.1| terminase large subunit [Salmonella phage epsilon15]
Length = 491
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 214/456 (46%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQNPATRHQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKEWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG +SD +V V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 253 WVDDYGEESDFVKVRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ + G + D + N+R E+ WL+ ++ +L S
Sbjct: 373 GDGWGRTWQLIPFGGG--STDPQML-NKRGEMFNSCKTWLKLGGALDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|89152423|ref|YP_512256.1| putative terminase large subunit [Escherichia phage phiV10]
gi|74055446|gb|AAZ95895.1| putative terminase large subunit [Escherichia phage phiV10]
Length = 491
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 214/456 (46%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKTAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG SD ++ V G FP FIP + +EA+ R +AP+I+G D A
Sbjct: 253 WVDDYGEGSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL +++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTWLRLGGMLDDQETADDL-STAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ IE K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|262043569|ref|ZP_06016682.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039103|gb|EEW40261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 491
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 137/456 (30%), Positives = 212/456 (46%), Gaps = 24/456 (5%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ L+ FPWGE GT L + PR WQ + + H N P + A ++G GIG
Sbjct: 25 GYALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQNPATRHQPLML--ARASGHGIG 82
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF + +++
Sbjct: 83 KSAFISMLINWAMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKEWFTCTATAMY 142
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVIN 208
+D H K + +SE + F G HN + ++ DEAS D++
Sbjct: 143 S----NDPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRIVVVFDEASNIADLVW 192
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
G LT+ + W+ NP R +G+F E F K WK QID+RTVEG + +
Sbjct: 193 EVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQLQK 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAE 326
+ YG DSD +V V G FP FIP + +EA+ R +AP I+G D A
Sbjct: 253 WVDDYGEDSDFVKVRVRGIFPDASELQFIPTGLTDEAMKRVVTAVQVAHAPRIIGVDPAY 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTC 384
G D+ V+ LR+G + L+ +K TD +I+ ++Y DA+ ID TG ++
Sbjct: 313 SGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYLADAVFIDFGYGTGLKSI 372
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+ G V + D + N+R E+ WL+ ++ +L S
Sbjct: 373 G--DGWGRTWQLVPFGGASADPQML-NKRGEMFNACKTWLKLGGALDDQETADDL-SAAE 428
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ V G++ +E K + + +S D L+ TFA
Sbjct: 429 YKVRVDGKIVMEPKEDIKERLGRSPGKGDALLLTFA 464
>gi|227355862|ref|ZP_03840255.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
gi|227164181|gb|EEI49078.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
Length = 494
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 223/501 (44%), Gaps = 39/501 (7%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MS L +PE EQ + D+ L ++ + FPWGE G LE ++ PR WQ E +
Sbjct: 1 MSEALQKSPE-EQLIEDIASFTHDPLGYAYYA---FPWGEAGGELEEYNGPRQWQAEALN 56
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ H N P + A ++G GIGK+ + ++ W M T V+ AN+E QL
Sbjct: 57 EIGEHLRNPKTRHQPLLL--ARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQL 114
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSL------HPAPWYSDVLHCSLGIDSKHYSTMCR 174
+T W E++KW L +WF ++ H W +D +
Sbjct: 115 RTKTWPEIAKWQRLSLTNNWFTCTKTAIYSNDPNHANAWRADAV---------------- 158
Query: 175 TYSEERPDTFVGHHNTYGMAI-INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+SE + F G HN I + DEAS D++ G LT+ WI NP R
Sbjct: 159 PWSENNTEAFAGLHNKGKRIILVFDEASNIADLVWEVAEGALTDEGTEIIWIAFGNPTRN 218
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+G+F E F K W QID+RTVEG + + YG DSD +V V G FP
Sbjct: 219 TGRFRECFRKFKHRWNTKQIDSRTVEGSNKEQIKNWEEDYGEDSDFFKVRVRGVFPSASE 278
Query: 294 DSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF-DWSK 350
FIP + +EA+ R +AP+I+G D A G D+ V+ LR+G + L+ +
Sbjct: 279 LQFIPTGLTDEAMKRIVTQAEVAHAPVIIGVDPAYSGIDDAVIYLRQGLFSKCLWTGFKT 338
Query: 351 TDLRTTNNKISGLVEKYRPDAIIID-ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
TD +I+ ++Y+ DA+ ID TG + + V+R++ A
Sbjct: 339 TDDVVMAKRIADFEDQYKADAVHIDFGYGTGIHS---IGTSWGRVWRLVKFGGASTDPQM 395
Query: 410 RNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKST 466
N+R E++ + WL+ I+ +L + + ++ +E K + + +S
Sbjct: 396 LNKRGEMYNSVKTWLKIGGAIDDQETADDLSCGEYKVRVIDSKIVLEDKTEIKKRLGRSP 455
Query: 467 DYSDGLMYTFAENPPRSDMDF 487
D L TFA + D ++
Sbjct: 456 GKGDALALTFAYPVTKIDRNY 476
>gi|282848875|ref|ZP_06258265.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|282581380|gb|EFB86773.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
Length = 483
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 140/475 (29%), Positives = 217/475 (45%), Gaps = 62/475 (13%)
Query: 31 FVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGK 90
FV +PWGE GTPLE P WQ++ ++ + + + A+++G GIGK
Sbjct: 21 FVYFAYPWGEPGTPLENMEGPDEWQIQILKDIGEQLKKGKDLQT--AIQEAVASGHGIGK 78
Query: 91 TTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHP 150
+ L +WL+ + +ST + AN+E QL+T W E+SKW ++ K F + ++
Sbjct: 79 SALISWLIHFAISTHENTRGVVTANTEGQLRTKTWPELSKWHNMFIAKDLFTYTATAIFS 138
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRT----YSEERPDTFVGHHNTYG-MAIINDEASGTPD 205
+ K Y R +S+ P++F G HN + ++ DEAS D
Sbjct: 139 S--------------DKDYEKTWRIDAIPWSKNSPESFAGLHNQGNRILVLFDEASAIDD 184
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF 265
VI G LT+ N W NP R SG+F E F K W +QID+RTV+ + +
Sbjct: 185 VIWEVTEGALTDANTEIIWCAFGNPTRNSGRFRECFRKYRKFWNTYQIDSRTVKISNKTK 244
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCD 323
E + YG DSD +V V G FP FI I ++A + +P + P+I+G D
Sbjct: 245 IEEWLEAYGEDSDFFKVRVRGVFPSASDLQFISTEIADKAQKQVYKPGQFEHLPVIIGVD 304
Query: 324 IAEEGGDNTVVVLRRGPVIEHLF-------DWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
A G D+ +V+R+G ++ L DW L I+ ++Y+ DA+ ID
Sbjct: 305 PAWTGSDSLEIVMRQGYYMKSLASIPKNDDDWRMAQL------IAQFEDEYKADAVFIDM 358
Query: 377 N-NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCR--------NRRTELHVKMADWLEFA 427
TG Y + + LG+K + +EF N R + +M +WL
Sbjct: 359 GYGTGI----------YSIGKQLGRKWRL-IEFGGKSNDPVYLNMRAYMWGQMKEWLREG 407
Query: 428 SLI--NHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
I N L ++ ++ I N G + +ESK + +G S + D L TFA
Sbjct: 408 GSIPPNDQALYDDIVGPEAIIDKN-GRIQLESKKDMKDRGLPSPNKGDALALTFA 461
>gi|54302246|ref|YP_132239.1| terminase large subunit [Photobacterium profundum SS9]
gi|46915667|emb|CAG22439.1| hypothetical protein PBPRB0566 [Photobacterium profundum SS9]
Length = 513
Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 202/446 (45%), Gaps = 27/446 (6%)
Query: 37 PWGEKGTPLEGFSAPRSWQLE----FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT 92
PW K + G P +W E EV+ + N V+ + F +IS+G GIGK+
Sbjct: 48 PWASKYDSVYG---PDAWFCEMCDQLQEVIRKNDFNGVDPV--DAFLYSISSGHGIGKSC 102
Query: 93 LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP 152
++WL+ ++MSTRP + +N+ QL+T W E+ KW L NKHWF + +
Sbjct: 103 ASSWLIHFVMSTRPNSKGVVTSNTSEQLRTKTWGELGKWTKKLINKHWFVYNNGKGNMNF 162
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-IINDEASGTPDVINLGI 211
++ D ++ + +T EE ++F G H + DEAS PD I
Sbjct: 163 YHKDY--------AETWRVDAQTCREENSESFAGLHCASSTPWYLFDEASAVPDKIWEVA 214
Query: 212 LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA 271
G LT+ FW + NP R SG+F E + + W R QID+ TV+ + +
Sbjct: 215 EGGLTD--GEPFWFVFGNPTRNSGRFRECWRRFRQRWNRKQIDSSTVQVTNKKKISEWES 272
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
YG DSD RV V G FP + I ++E A++R P +P +M D+A GGDN
Sbjct: 273 DYGEDSDFYRVRVKGVFPSASSNQKISGALLEAAMSRTAHVIPGSPRVMSLDVARGGGDN 332
Query: 332 TVVVLRRG--PVIEHLFDWSKTDLRTTNNKISGLVE---KYRPDAIIIDANNTGARTCDY 386
V R G + ++ R + + V+ +++PDA ID G D
Sbjct: 333 CVFRFRHGLNGGVRKKVTLPGSEYRDSMKLAAMAVQLCSEFKPDAFFIDETGVGGPVGDR 392
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH-SGLIQNLKSLKSF 445
+ LG++ + +A D + N R ++ + +WL+ +++ GL+ + +++
Sbjct: 393 IRQLGFNCIGINFASKAPDPHYA-NMRAYMYHQWGEWLKAGGSLHYDEGLLTEVGAIEYT 451
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDG 471
E+ I +K A DG
Sbjct: 452 HDRKDREILIPKDVIKKAIGISTDDG 477
>gi|332981151|ref|YP_004462592.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
gi|332698829|gb|AEE95770.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
Length = 461
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 140/452 (30%), Positives = 206/452 (45%), Gaps = 58/452 (12%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
+ P WQ E ++ + NP V A+ +G G+GKT L AW +LW + TRP
Sbjct: 25 AEPDDWQAETLQAL---------ADNPRV---AVRSGHGVGKTALEAWALLWFLFTRPYP 72
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSL----HPAPWYSDVLHCSLG 163
+ C A + QL LWAE SKWL P K +FE Q + +P W++
Sbjct: 73 KIPCTAPTREQLHDILWAEASKWLERAPALKPYFEWQKTRIVQKQYPGRWFA-------- 124
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
RT + +P+ G H + + II DEASG D I I G LT +A
Sbjct: 125 --------TARTSN--KPENMAGFHEEHLLFII-DEASGIADNIFETIEGALTTSDAK-- 171
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
+M NP + SG F++ F K + ++ + + + E + +Y DSDV RV
Sbjct: 172 LLMCGNPTKNSGVFHDAFFKDRSLYWTRKVSCLDSQRVTLEYAERLKRKYHEDSDVYRVR 231
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
V G+FP+ + D+FI L+I+E A R+ PD L +G D+A G D TV+ R G +
Sbjct: 232 VLGEFPKAEPDTFISLDIVEAATMRDVEPD--GVLEIGVDVARFGDDETVLAARAGLKLV 289
Query: 344 HLFDWSKTDLRTTNNKISGLVEKY-----RPDAII-IDANNTGARTCDYL------EMLG 391
+L ++K D TT L + +P I ID + G D E L
Sbjct: 290 YLKAYTKQDTMTTAGYAIALAKDLMKECGKPKCTIKIDDDGVGGGVTDRCREVVREEKLY 349
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL--EFASLINHSGLIQNLKSLKSFIVPN 449
V D E N TE + D L E A LIN LI L + K + + +
Sbjct: 350 IDVIDCHNGGAPEDKEHYENWGTEAWAYLRDLLQDEQAELINDEDLIGQLTTRK-YRITS 408
Query: 450 TGELAIESK---RVKGAKSTDYSDGLMYTFAE 478
G++A+ESK + +G S D +D ++ +A+
Sbjct: 409 KGKIALESKDEMKRRGLMSPDRADAVVLAYAK 440
>gi|228968731|ref|ZP_04129698.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790961|gb|EEM38595.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 459
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 137/492 (27%), Positives = 223/492 (45%), Gaps = 77/492 (15%)
Query: 14 KLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
++ D+ W D + +F+ +L F+P WQ + + ++ +P
Sbjct: 2 EIIDVYWDDPV--AFAEDMLGFYP--------------DEWQRKVL-------MDLAQSP 38
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
K ++ +G+G+GKT L + +V+W + RP VIC A ++ QL T LWAE++KWL
Sbjct: 39 -----KVSVRSGQGVGKTGLESVVVIWFLCCRPNPKVICTAPTKEQLFTVLWAEIAKWLE 93
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
K+ + ++ +G + + ++T RT + +P+ G H Y M
Sbjct: 94 GSAVKNLLKWTKTRVY-----------MIGSEERWFAT-ARTAT--KPENMQGFHEDY-M 138
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ DEASG D I ILG L+ A + NP R SG FY+ N+ D +K ++
Sbjct: 139 LFVCDEASGIADPIMEAILGTLS--GAENKLFLCGNPTRTSGVFYDSHNRDRDLYKIHKV 196
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ E + +YG SDV RV V G+FP+ + D+FIPL I+E+A + + P
Sbjct: 197 SSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPKAEADAFIPLEIVEQAASCKVEPT 256
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY------ 367
L +G D+A G D TV+ R G + L + K D T + L ++Y
Sbjct: 257 GET-LDLGVDVARFGDDETVIAPRIGNKVFKLLNHYKQDTMETAGHVLKLAKEYMAKYKQ 315
Query: 368 --RPDAIIIDANNTGARTCDYL------EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
R D I +D + G D L E L + VY V+ + +D E N TE
Sbjct: 316 LKRVD-IKVDDSGVGGGVTDRLKEVIKSERLPFKVYPVVNNGKPLDDEHYDNAGTEGWAV 374
Query: 420 MADWLE------------FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
+ D LE + N +I S K + + + G++A+E K + +G +
Sbjct: 375 VRDLLEENMKAFIQGEEPTMEIPNDEKMISQFSSRK-YRITSRGKIALERKEEMKKRGLQ 433
Query: 465 STDYSDGLMYTF 476
S D +D ++ F
Sbjct: 434 SPDRADAIVLAF 445
>gi|228911519|ref|ZP_04075310.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
200]
gi|228848128|gb|EEM92991.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
200]
Length = 459
Score = 156 bits (394), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 136/492 (27%), Positives = 222/492 (45%), Gaps = 77/492 (15%)
Query: 14 KLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
++ D+ W D + +F+ +L F+P WQ + + ++ +P
Sbjct: 2 EIIDVYWDDPV--AFAEDMLGFYP--------------DEWQRKVL-------MDLAQSP 38
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
K ++ +G+G+GKT L + +V+W + RP VIC A ++ QL T LWAE++KWL
Sbjct: 39 -----KVSVRSGQGVGKTGLESVVVIWFLCCRPNPKVICTAPTKEQLFTVLWAEIAKWLE 93
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
K+ + ++ +G + + ++T RT + +P+ G H Y M
Sbjct: 94 GSAVKNLLKWTKTRVY-----------MIGSEERWFAT-ARTAT--KPENMQGFHEDY-M 138
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ DEASG D I ILG L+ A + NP R SG FY+ N+ D +K ++
Sbjct: 139 LFVCDEASGIADPIMEAILGTLS--GAENKLFLCGNPTRTSGVFYDSHNRDRDLYKIHKV 196
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ E + +YG SDV RV V G+FP+ + D+FIPL I+E+A + + P
Sbjct: 197 SSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPKAEADAFIPLEIVEQAASCKVEPT 256
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY------ 367
L +G D+A G D TV+ R G + L + K D T + L ++Y
Sbjct: 257 GET-LDLGVDVARFGDDETVIAPRIGNKVFKLLNHYKQDTMETAGHVLKLAKEYMAKYKQ 315
Query: 368 --RPDAIIIDANNTGARTCDYL------EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
R D I +D + G D L E L + VY V+ + +D E N E
Sbjct: 316 LKRVD-IKVDDSGVGGGVTDRLKEVIKSERLPFKVYPVVNNGKPLDDEHYDNAGAEGWAV 374
Query: 420 MADWLE------------FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
+ D LE + N +I S K + + + G++A+E K + +G +
Sbjct: 375 VRDLLEENMKAFIQGEEPTMEIPNDEKMISQFSSRK-YRITSRGKIALERKEEMKKRGLQ 433
Query: 465 STDYSDGLMYTF 476
S D +D ++ F
Sbjct: 434 SPDRADAIVLAF 445
>gi|332976102|gb|EGK12970.1| hypothetical protein HMPREF9374_1123 [Desmospora sp. 8437]
Length = 462
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 129/427 (30%), Positives = 197/427 (46%), Gaps = 55/427 (12%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A+ AG G+GKT AW VLW + TRP + C A ++ QL LW E++KWL
Sbjct: 51 AVRAGHGVGKTATEAWAVLWFLLTRPFPKIPCTAPTKPQLMDVLWPEIAKWL-------- 102
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
M + L P + + + ++T RT + +P+ G H + + +I DEA
Sbjct: 103 --MNAPELAPYVEWQKTRVVMKQYEERWFAT-ARTSN--KPENMAGFHEEHLLFVI-DEA 156
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
SG + I I G LT A +M NP R +G FY+ F++ D + ++I +
Sbjct: 157 SGVDNAIFETIDGALT--TAGSKLVMFGNPTRTNGVFYDAFHQDRDLYWTYKISCLDSKM 214
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
+ + +YG DSD+ RV V G+FPQ D DSFIPL ++E+A R+ L +
Sbjct: 215 ASKDYARNMARKYGEDSDIYRVRVQGEFPQGDPDSFIPLELVEDARVRDLEWIDEDELHI 274
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG--------LVEKYRPDAI 372
G D+A G D TV+ R GPV F + RT + G L+E++R D
Sbjct: 275 GVDVARFGSDETVLAARIGPVA---FRLDRYGGRTPTTETVGRVLALARELMEEHRRDYA 331
Query: 373 IIDANNT--GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH--VKMADW----- 423
++ ++T G D L+ + V + +D+ C N T H DW
Sbjct: 332 VVKVDDTGVGGGVTDQLQEI------VAEEGLNIDVIPCNNGATPEHDPDHYHDWGTESW 385
Query: 424 ---------LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDG 471
E A I+ LI L + K + + G++ +ESK + +G +S D +D
Sbjct: 386 GTLLDRFKAGEIALKIDDEDLIGQLTTRKKEMT-SKGKIKLESKEKMKKRGQRSPDRADA 444
Query: 472 LMYTFAE 478
L+ FAE
Sbjct: 445 LVLAFAE 451
>gi|209901239|ref|YP_002290878.1| putative terminase B [Clostridium phage phiCD27]
gi|199612120|gb|ACH91293.1| putative terminase B [Clostridium phage phiCD27]
Length = 469
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 202/437 (46%), Gaps = 62/437 (14%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
K +I +G+G+GKT L + +W +STRP V+ A + QL LWAE++KWLS +
Sbjct: 44 KVSIRSGQGVGKTGLESIATVWYLSTRPFPKVVATAPTRQQLYDVLWAEIAKWLSNSKVE 103
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
E W ++ G + + ++T RT +P+ G H Y M + D
Sbjct: 104 KLLE----------WTKTKVYMK-GFEERWWAT-ARTAV--KPENMQGFHEDY-MLFVVD 148
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT--- 255
EASG D I ILG L+ A ++ NP R SG FY+ N+ D +K F++ +
Sbjct: 149 EASGVADPIMEAILGTLS--GAENKLLLCGNPTRTSGTFYDSHNRDRDLYKTFKVSSLDS 206
Query: 256 -RT----VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
RT +E + +HEG SD RV V G+FP+ + DS I L +E + RE
Sbjct: 207 PRTSKDNIEMLKRKYHEG--------SDPWRVRVLGEFPKGESDSLISLEAVETSTIREV 258
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR-- 368
L +G DIA G D T++ R G + L +SK D T I V+K++
Sbjct: 259 NISNDYILNIGADIARYGDDETIIAPRIGGKVFDLLTYSKKDTMETVGNILRAVDKFKNM 318
Query: 369 -----PDAIIIDANNTGARTCDYL------EMLGYHVYRVLGQKRAVDL--------EFC 409
I D + GA D L E L Y V + A++ E
Sbjct: 319 YHQINRVKIKTDDDGLGAGVTDRLKEVIRHERLKYEVIPIQNGSSAIEKDKYYNKASEMW 378
Query: 410 RNRRTELHVKMADWLE----FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKG 462
N R EL ++ +++ L N LI+ L + K + V + G++ IESK + +
Sbjct: 379 DNMREELDANLSSFIQNKEAIIQLPNDDKLIKQLSNRK-YTVDSKGKIQIESKKEMKKRI 437
Query: 463 AKSTDYSDGLMYTFAEN 479
+S D +D ++Y+FAEN
Sbjct: 438 GESPDRADAVIYSFAEN 454
>gi|150016512|ref|YP_001308766.1| hypothetical protein Cbei_1636 [Clostridium beijerinckii NCIMB
8052]
gi|149902977|gb|ABR33810.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
8052]
Length = 470
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 203/438 (46%), Gaps = 63/438 (14%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
K ++ +G+G+GKT L + +V W + TRP VI A + QL LWAE+SKWL+ +
Sbjct: 44 KVSVRSGQGVGKTGLESIVVTWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLASSKIE 103
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ E ++ + S+ + +T + RP+ G H Y M + D
Sbjct: 104 NLLEWTKTKIYMKGY------------SERWWATAKTAT--RPENMQGFHEDY-MLFVVD 148
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT--- 255
EASG D I ILG LT N+ +M NP R SG FY+ N+ D +K F++ +
Sbjct: 149 EASGVADPIMEAILGTLTGYE-NKL-LMCGNPTRTSGTFYDSHNRDRDLYKTFKVSSLES 206
Query: 256 -RT----VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA-LNRE 309
RT +E + +HEG SDV RV V G+FP+ + DS I L E A + +
Sbjct: 207 PRTSKDNIEMLKRKYHEG--------SDVWRVRVEGEFPKGESDSLISLEYAETATITKI 258
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
L +G DIA G D +V+ R G + L ++K D T I +K++
Sbjct: 259 NNIHNNFTLHIGADIARFGNDESVIAPRIGNKVFDLLTYTKKDTMETTGNILRATDKFKN 318
Query: 370 D-------AIIIDANNTGARTCDYL------EMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
+ I +D + G D L E LGY V + +A D E ++ E+
Sbjct: 319 EYKHINKVKIRVDDDGLGGGVTDRLREVIRQEGLGYEVMPIKNGSKANDEEHYSDKSAEM 378
Query: 417 HVKMADWLE--FASLI----------NHSGLIQNLKSLKSFIVPNTGELAIESK---RVK 461
M D LE F + + N+ LI+ L + K F + + G + +E K + +
Sbjct: 379 WGNMRDILEENFTNFVQGKEPTIELPNNDKLIKQLSNRK-FRIDSKGRIDLEKKEEMKKR 437
Query: 462 GAKSTDYSDGLMYTFAEN 479
+S D +D ++Y+FAEN
Sbjct: 438 IGESPDLADAVIYSFAEN 455
>gi|150390341|ref|YP_001320390.1| hypothetical protein Amet_2579 [Alkaliphilus metalliredigens QYMF]
gi|149950203|gb|ABR48731.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
Length = 469
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 195/428 (45%), Gaps = 44/428 (10%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
K ++ +G+G+GKT L + + W + TRP VI A + QL LWAE+SKWLS
Sbjct: 44 KVSVRSGQGVGKTGLESIAITWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLS----- 98
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+S W ++ + G + + ++T RT RP+ G H Y M + D
Sbjct: 99 -----KSKVDKLLRWTKTKIYMN-GFEERWWAT-ARTAV--RPENMQGFHEDY-MLFVVD 148
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
EASG D I ILG LT N+ ++ NP + SG FY+ N+ D +K ++ +
Sbjct: 149 EASGVADPIMEAILGTLTGYE-NKL-LLCGNPTKTSGTFYDSHNRDRDTYKSHKVSSMDS 206
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
E + +YG DSDV RV V G FP+ + DS I L + E+A L
Sbjct: 207 PRTSKENIEMLKKKYGADSDVFRVRVLGDFPKGEADSLISLEVTEQAAETVVDISNAYTL 266
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD-------A 371
+G DIA G D T++ R G + L +SK D T I V++ +
Sbjct: 267 NIGADIARFGDDKTIIAPRIGNRVLDLQQYSKKDTMETAGNILRTVDRLKTQHLQINKIV 326
Query: 372 IIIDANNTGARTCDYL------EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
I ID + G D L + LGY + + +A D E N+ E+ + + L+
Sbjct: 327 IKIDDDGLGGGVTDRLREINRQQSLGYIIVPIKNGSKADDPEHYYNKAAEMWDNIRELLD 386
Query: 426 ---FASLINHSGLIQNLK--------SLKSFIVPNTGELAIESK---RVKGAKSTDYSDG 471
L G+IQ K S + + V + G + +ESK + + +S D +D
Sbjct: 387 ENLSKFLQGEPGVIQLPKDDILIKQLSNRKYKVDSKGRIELESKDEMKRRIGESPDRADA 446
Query: 472 LMYTFAEN 479
++Y+FA +
Sbjct: 447 VIYSFASD 454
>gi|153810665|ref|ZP_01963333.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
gi|149833061|gb|EDM88143.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
Length = 469
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 142/284 (50%), Gaps = 17/284 (5%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
++ +G GIGK+ + AW V+W M T P + C A ++ QL LWAE+SKW N
Sbjct: 44 SVRSGHGIGKSAVEAWSVIWFMCTHPYPKIPCTAPTQHQLFDILWAEISKWKR---NNKT 100
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + W + L+ + ++ + + RT S PD G H + + II DEA
Sbjct: 101 LDSELI------WTKEKLY--MKGHAEEWFAVARTAST--PDALQGFHAEHMLYII-DEA 149
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
SG D I +LG L+ A +M NP +LSG FY+ NK + + F ID R
Sbjct: 150 SGVEDKIFEPVLGALSTPGAK--LLMCGNPTQLSGFFYDSHNKNREQYSTFHIDGRNSTR 207
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI- 319
+ F + II YG DSDV RV V G FP + D +IPL ++E+++ E P + +I
Sbjct: 208 VSQEFVQTIINMYGEDSDVFRVRVAGDFPLAEDDIYIPLPLVEKSIATEYFPRRHPQIIH 267
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL 363
+GCD+A G D TV+ R ++ D T + I L
Sbjct: 268 IGCDVARFGTDKTVIGYRTDEKVQFFKKRVGQDTMKTADDIVSL 311
>gi|228950291|ref|ZP_04112468.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228809453|gb|EEM55897.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 495
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 126/470 (26%), Positives = 200/470 (42%), Gaps = 73/470 (15%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ E + + H SV +G+G+GKT + +W+ +W + RP +
Sbjct: 41 PDPWQKEVLNDIANHSHVSVR------------SGQGVGKTAMESWICIWFLCCRPYPKI 88
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
IC A ++ QL LWAE++KWL+ K + W ++ G + + ++
Sbjct: 89 ICTAPTKQQLYDVLWAEIAKWLNSSQVKDLLK----------WTKTKIYMK-GFEDRWFA 137
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
T + RP+ G H Y M I DEASG D I ILG L+ F M NP
Sbjct: 138 T---AKTATRPENMQGFHEDY-MLFIADEASGIADDIMEAILGTLSGSENKLF--MCGNP 191
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ SG F++ NK +K ++ + E + +YG SDV RV V G+FP+
Sbjct: 192 TKTSGVFFDSHNKDRALYKSHKVSSADSPRTSKKNIEMLKKKYGEGSDVYRVRVEGEFPR 251
Query: 291 QDIDSFIPLNIIEEALNREP------------------CPDPYAPLIMGCDIAEEGGDNT 332
+ D+FI L E A RE PD A + +GCD+A G D T
Sbjct: 252 GEADAFISLETAEAARMREVYKVEVIENEEEESTVKEIIPDT-AVVEIGCDVARFGSDET 310
Query: 333 VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY--------RPDAIIIDANNTGARTC 384
++ RRG + L + D + + +KY + I ID G
Sbjct: 311 IIATRRGWKVLPLQVHHQRDTMYVSGLLVQEAKKYFSWCERTGKRIPIRIDDTGVGGGVT 370
Query: 385 DYL-EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA--------DWLEFASLINHSGL 435
D L E++ + Y + + + F E ++ + LEF +L + L
Sbjct: 371 DRLKEVVAENDYPI----DVIPINFASKGNAEYACIVSVMYGHFKDNCLEFVALPDDEDL 426
Query: 436 IQNLKSLKSFIVPNTGELAIESKRV---KGAKSTDYSDGLMYTFAENPPR 482
I L S++ + + + G + IE K+ +G KS D ++ ++ FA P+
Sbjct: 427 IAQL-SVRKYQINSDGRIKIEPKKAMKDRGLKSPDRAEAVVMAFAPFYPK 475
>gi|257883493|ref|ZP_05663146.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|294614775|ref|ZP_06694675.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
gi|294622490|ref|ZP_06701512.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|257819151|gb|EEV46479.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|291592387|gb|EFF23996.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
gi|291598037|gb|EFF29147.1| conserved hypothetical protein [Enterococcus faecium U0317]
Length = 471
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 131/478 (27%), Positives = 218/478 (45%), Gaps = 49/478 (10%)
Query: 34 HFFPWGEKGTPLEGF-SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT 92
F P+ + G+ ++ + P ++ + + + +V N E K ++ +G+G+GKT
Sbjct: 4 EFIPFADIGSAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTA 63
Query: 93 LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP 152
L A +LW ++ RP VI A + QL LWAEV+KWL+ SL +
Sbjct: 64 LEAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLN----------DSLIKNLLK 113
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
W ++ +G DS+ + RT + +P+ G H + M I+ DEASG D I IL
Sbjct: 114 WTKTKIYM-VG-DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAIL 168
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
G L+ + +M NP + G FY+ N D ++ ++ + + + E I+ +
Sbjct: 169 GTLS--GFDNKLLMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKK 226
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE---PCPDPYAPLIMGCDIAEEGG 329
YG +SDV RV + G+FP+ +DSFI L +E A ++ + +G D+A G
Sbjct: 227 YGKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGD 286
Query: 330 DNTVVVLRRGPVIEHLFDWSK-TDLRTTN---NKISGLVEKY-RPDAIIIDANNT--GAR 382
D+T++ R +SK + + TT N L+ +Y D ++I ++T G
Sbjct: 287 DSTILFPRIATRALEYEKYSKRSTMETTGYVINMAKNLMSQYPSIDKVMIKVDDTGVGGG 346
Query: 383 TCDYLEML---GYHVYRVLGQKRAVDLE--FCRNRRTELHVKMADWLE------------ 425
D LE L ++ + V G E F N T+L + + LE
Sbjct: 347 VTDRLEELIEDKHYPFEVFGVNNGSTSEDDFYDNLGTQLWGNIKEMLEENMTANLNGEQP 406
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L + S LI+ L S + F + + + +ESK + + S D +D L F E P
Sbjct: 407 VIELPSDSSLIKEL-STRKFKMTSRSRIRLESKDDMKKRNIGSPDIADALALAFYEPP 463
>gi|282598712|ref|YP_003358792.1| putative phage terminase B protein [Enterococcus phage phiEf11]
gi|300860603|ref|ZP_07106690.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|307292389|ref|ZP_07572245.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
TX0411]
gi|258598082|gb|ACV83339.1| putative phage terminase B protein [Enterococcus phage phiEf11]
gi|300849642|gb|EFK77392.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|306496518|gb|EFM66079.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
TX0411]
gi|315146097|gb|EFT90113.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
Length = 484
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/431 (28%), Positives = 198/431 (45%), Gaps = 50/431 (11%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
K ++ +G+G+GKT L A +LW ++ RP VI A + QL LWAEV+KWL+
Sbjct: 50 KVSVRSGQGVGKTALEAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLN----- 104
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
SL W ++ +G DS+ + RT + +P+ G H + M I+ D
Sbjct: 105 -----NSLIKDLLKWTKTKIYM-VG-DSERWFATARTAT--KPENMQGFHEDH-MLIVVD 154
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
EASG D I ILG L+ + +M NP + G FY+ N D ++ ++ +
Sbjct: 155 EASGVADPIMEAILGTLS--GFDNKLLMCGNPNNIEGVFYDSHNTDRDKYRTHKVSSYDS 212
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ + + +I +YG +SDV RV + G+FP+ +DSFI L I+E A + +
Sbjct: 213 KRTNKENIQMLIDKYGENSDVARVRIYGEFPKGALDSFISLEIVEFAKDINISDSELKHV 272
Query: 319 I---MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA---- 371
+G D+A G D+T+V R G +SK D T ++ ++ D
Sbjct: 273 REGHIGVDVARFGDDSTIVFPRIGAKALPFEKYSKQDTMQTTGRVLKAAKRMMDDYPTIK 332
Query: 372 ---IIIDANNTGARTCDYL------EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
I +D G D L E L Y V V + + D ++ N+ T++ + +
Sbjct: 333 KVFIKVDDTGVGGGVTDRLKEVISDEKLPYEVIPVNNGESSTD-DYYANKGTQIWGDVKE 391
Query: 423 WLE--FASLINHSG----------LIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTD 467
LE ++ IN G LI+ L S + F + + G++ +ESK + + S D
Sbjct: 392 LLEQNISNSINGQGPTIELPDNANLIKEL-STRKFKMTSNGKIRLESKEDMKKRNVGSPD 450
Query: 468 YSDGLMYTFAE 478
+D L F E
Sbjct: 451 IADALTLAFYE 461
>gi|261208032|ref|ZP_05922709.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289567088|ref|ZP_06447483.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|260077749|gb|EEW65463.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289161103|gb|EFD09008.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
Length = 471
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 131/478 (27%), Positives = 217/478 (45%), Gaps = 49/478 (10%)
Query: 34 HFFPWGEKGTPLEGF-SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT 92
F P+ + G ++ + P ++ + + + +V N E K ++ +G+G+GKT
Sbjct: 4 EFIPFADIGAAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTA 63
Query: 93 LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP 152
L A +LW ++ RP VI A + QL LWAEV+KWL+ SL +
Sbjct: 64 LEAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLN----------DSLIKNLLK 113
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
W ++ +G DS+ + RT + +P+ G H + M I+ DEASG D I IL
Sbjct: 114 WTKTKIYM-VG-DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAIL 168
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
G L+ + +M NP + G FY+ N D ++ ++ + + + E I+ +
Sbjct: 169 GTLS--GFDNKLLMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKK 226
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE---PCPDPYAPLIMGCDIAEEGG 329
YG +SDV RV + G+FP+ +DSFI L +E A ++ + +G D+A G
Sbjct: 227 YGKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGD 286
Query: 330 DNTVVVLRRGPVIEHLFDWSK-TDLRTTN---NKISGLVEKY-RPDAIIIDANNT--GAR 382
D+T++ R +SK + + TT N L+ +Y D ++I ++T G
Sbjct: 287 DSTILFPRIATRALEYEKYSKRSTMETTGYVINMAKNLMSQYPSIDKVMIKVDDTGVGGG 346
Query: 383 TCDYLEML---GYHVYRVLGQKRAVDLE--FCRNRRTELHVKMADWLE------------ 425
D LE L ++ + V G E F N T+L + + LE
Sbjct: 347 VTDRLEELIEDKHYPFEVFGVNNGSTSEDDFYDNLGTQLWGNIKEMLEENMTANLNGEQP 406
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L + S LI+ L S + F + + + +ESK + + S D +D L F E P
Sbjct: 407 VIELPSDSSLIKEL-STRKFKMTSRSRIRLESKDDMKKRNIGSPDIADALALAFYEPP 463
>gi|289578588|ref|YP_003477215.1| hypothetical protein Thit_1395 [Thermoanaerobacter italicus Ab9]
gi|289528301|gb|ADD02653.1| conserved hypothetical protein [Thermoanaerobacter italicus Ab9]
Length = 460
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 118/416 (28%), Positives = 183/416 (43%), Gaps = 45/416 (10%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A+ A G+GKT + AW+ LW + T VI A + Q++ LW E+
Sbjct: 49 AVRACHGVGKTKVAAWVALWFLYTHHNSKVITTAPTWHQVENLLWREIH----------- 97
Query: 141 FEMQSLSLHPA---PWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ H A P VL + + + ++ T ++P+ F G H + + I+
Sbjct: 98 ------AAHAASRIPLGGKVLQTQIELGEQWFALGLST---DKPERFQGFHAEHILLIV- 147
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI---D 254
DEASG GFLT A ++ NP +LSG+FY F PL + + I D
Sbjct: 148 DEASGVEQYTFDAAEGFLTSIGAK--LLLIGNPTQLSGEFYNAFRSPL--YHKIHISAFD 203
Query: 255 TRTVEG--------IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
+ ++ + P + E ++G DS + V G+FP+Q D+ IPL IE A
Sbjct: 204 SPNLKAGKIVRPYLVTPEWVEDKRLKWGEDSPLWYSRVLGEFPEQGNDTLIPLAWIEAAQ 263
Query: 307 NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
R + P+ +G D+A G D TV++LRRG E ++ D K+ +K
Sbjct: 264 QRWHMTEAGEPVEIGADVARYGTDTTVIMLRRGDKAEIVYQLRGQDTMEVTGKVIDAFKK 323
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF 426
+ I ID GA D L+ GY V + + A D N+R E + + + +
Sbjct: 324 TGANVIKIDVVGIGAGVVDRLKEQGYPVQGLNVGESATDKGRFVNKRAEWYWALRERFQE 383
Query: 427 ASLI--NHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
++ L L SLK + + G + IESK R +G S D +D LM F+
Sbjct: 384 GTIAIPPDDELASQLASLK-YKFDSRGRIQIESKEELRRRGLPSPDKADALMLAFS 438
>gi|323486060|ref|ZP_08091391.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
WAL-14163]
gi|323400627|gb|EGA92994.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
WAL-14163]
Length = 476
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 125/430 (29%), Positives = 188/430 (43%), Gaps = 58/430 (13%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
K AI +G+G+GKT + A +LW + P ++ A ++ QL LW+EVSKW+S
Sbjct: 52 KVAIKSGQGVGKTGMEAVALLWFLCCYPYPRIVATAPTKQQLHDVLWSEVSKWMS----- 106
Query: 139 HWFEMQSLSLHPAPWYSDVL-----HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+P SD+L + + + K + + RT + +P+ G H M
Sbjct: 107 -----------KSPLLSDILKWTKTYIYMVGNEKRWFAVARTAT--KPENMQGFHED-NM 152
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
I DEASG D I ILG L+ AN +M NP R SG FY+ FN ++ +
Sbjct: 153 LFIVDEASGVADPIMEAILGTLS--GANNKLLMCGNPTRTSGTFYDAFNVDRSIYRCHTV 210
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE-PCP 312
+ + + E +I +YG DS+V V V G+FP+Q+ D FI L+I+E + P
Sbjct: 211 SSADSKRTNKQNIESLIRKYGKDSNVVLVRVFGEFPKQEDDVFIALSIVEHCCMLDLPDD 270
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE------- 365
P + G D+A G D TV+ G I + L TT KI L
Sbjct: 271 VPIKRISFGVDVARYGSDETVIAKNVGGRITLPVSFRGQSLMTTVGKIVQLYRQAITEFP 330
Query: 366 KYRPDAII-IDANNTGARTCDYLEML-----------------GYHVYRVLGQKRAVDLE 407
+YR I ID G D LE + G LG + +
Sbjct: 331 RYRGKIYINIDDCGLGGGVTDRLEEVKQEEKLTRMVIVPVNAAGKVPEETLGDGKQKACD 390
Query: 408 FCRNRRTEL--HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKG 462
N T L VK A +E SL N + L+ + + + + + G++ +ESK + +G
Sbjct: 391 IYDNMTTYLWGTVKDALMMEEVSLENDNELVAQF-TCRKYRLTSRGKMLLESKEEMKKRG 449
Query: 463 AKSTDYSDGL 472
S D +D +
Sbjct: 450 IDSPDRADAV 459
>gi|319956916|ref|YP_004168179.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
16511]
gi|319419320|gb|ADV46430.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
16511]
Length = 462
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/426 (28%), Positives = 197/426 (46%), Gaps = 39/426 (9%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
K +I +G G GKTTL AW+VLW R + A + QL L E+ KW +P +
Sbjct: 45 KISIRSGHGTGKTTLLAWIVLWWGLGREDAKIPMTAPTGHQLYDLLMPEIRKWREKMPVQ 104
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ E++ V + + +++ + RT +++P+ G H T +A I D
Sbjct: 105 YQNEVE------------VKTEKIDFANGNFA-VPRTARKDQPEALQGFHAT-NLAFIID 150
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
EASG P VI G +T + IM +NP R G FY+ +K W+ FQ +
Sbjct: 151 EASGIPQVIFEVAEGAMT--GESTLVIMAANPTRTEGYFYDSHHKNRWQWECFQFNAEES 208
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
E + + E +YG DSDV RV + G+FP+Q ++ L +++A RE D A
Sbjct: 209 ENVSKEWIEEKKRQYGEDSDVYRVRIKGEFPRQSSNAVFSLQEVDDATTREIVDDSGAE- 267
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY-----RPDAII 373
+ G D+A+ G D +V+ R+G +H + + T + L+ +Y +P I
Sbjct: 268 VWGLDVADFGDDKSVLAKRKG---KHFHEITARSGLTLPDLAGWLIYEYNQAKRKPAVIF 324
Query: 374 IDANNTGARTCDYLEMLGYH-VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH 432
+DA G+ G V V G A + E N+R E + + D LE + +
Sbjct: 325 VDAIGIGSSLPAVCFEKGLDIVIGVKGSNSASNSEKYHNKRAEWYYNLKDLLEDGKIPDD 384
Query: 433 SGLIQNLKSLKSFIVPNTGELA-IESKRVKG--AKSTDYSDG-------LMYTFAENP-- 480
L+ L + K + + +TG++ +E K +K +S D +D ++Y EN
Sbjct: 385 DELVGELMAQK-YQISSTGKIQLVEKKEIKKELGRSPDKADACALTCERMIYVEEENDDI 443
Query: 481 PRSDMD 486
P +DM+
Sbjct: 444 PEADME 449
>gi|160940775|ref|ZP_02088117.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
BAA-613]
gi|158436295|gb|EDP14062.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
BAA-613]
Length = 484
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 133/265 (50%), Gaps = 39/265 (14%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
++ +G GIGK+ + AW V+W M TRP + C A +E QL LWAE+SKW+
Sbjct: 44 SVRSGHGIGKSAVEAWSVIWYMCTRPFPKIPCTAPTEHQLMDVLWAEISKWMRNNPALRD 103
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L+ K MQ HP W++ + RT + P+ G H +
Sbjct: 104 DLIWTKEKLYMQG---HPEEWFA----------------VPRTATN--PEALQGFHAEHV 142
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ II DEASG D + +LG +T +A +M NP RL+G FY+ ++ + +
Sbjct: 143 LYII-DEASGVSDKVFEPVLGAMTGEDAK--LLMMGNPTRLAGFFYDSHHRNREQYSAIH 199
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+D R + + +F + II +G DSDV RV V GQFP+ DS I + EEA N +
Sbjct: 200 VDGRDSQHVSRTFVQKIIDMFGEDSDVFRVRVAGQFPKSTPDSLIAMEWCEEAANLQ--- 256
Query: 313 DPYAP---LIMGCDIAEEGGDNTVV 334
YAP + +G D+A G D++ +
Sbjct: 257 -VYAPGGQIDIGVDVARYGDDSSAL 280
>gi|266623290|ref|ZP_06116225.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
gi|288864932|gb|EFC97230.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
Length = 484
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 137/270 (50%), Gaps = 31/270 (11%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH- 139
++ +G G+GK+ + +W V+W + TRP + C A ++ QL LWAE+SKWL P
Sbjct: 44 SVRSGHGVGKSAVESWSVIWFLCTRPFPKIPCTAPTQHQLYDILWAEISKWLRNNPELKN 103
Query: 140 ---WFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
W + + ++ +P W++ + RT + P+ G H + + I
Sbjct: 104 DIIWTQQRVYMNGYPEEWFA----------------VPRTATN--PEALQGFHAEHVLYI 145
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
I DEASG D + +LG +T +A +M NP RLSG F++ +K ++ ID
Sbjct: 146 I-DEASGVSDKVFEPVLGAMTGEDAK--LLMMGNPTRLSGFFFDSHHKSRSEYSAMHIDG 202
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
R + ++ F + II +G+DSDV RV V GQFP+ DS I ++ E A +P
Sbjct: 203 RDSQHVNQKFVQKIINMFGMDSDVFRVRVAGQFPKSTPDSLIMMDWCEAATQLKP-ETVR 261
Query: 316 APLIMGCDIAEEGGDNTVVVLRRGPVIEHL 345
+ +G D+A G D++ + PVI+ +
Sbjct: 262 NRVDIGVDVARYGDDSSALY----PVIDKV 287
>gi|308069786|ref|YP_003871391.1| hypothetical protein PPE_03030 [Paenibacillus polymyxa E681]
gi|305859065|gb|ADM70853.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 452
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 134/463 (28%), Positives = 202/463 (43%), Gaps = 72/463 (15%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ + ++ NNP + ++ +G+G+GKT L A LW +S P V
Sbjct: 6 PDDWQASTL-------MDLANNP-----RVSVRSGQGVGKTGLEAATALWFLSCFPYPKV 53
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
IC A + QL LWAE++KW S P + W ++ + + ++
Sbjct: 54 ICTAPTRQQLHDVLWAEINKWQSKSP---------VLKRILKWTKTKIYMK-NYEERWFA 103
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
T RT + +P+ G H Y M I DEASG D I ILG L+ N+ +M NP
Sbjct: 104 T-ARTAT--KPENMQGLHEDY-MLFIVDEASGVADPIMEAILGTLSGE-FNKI-LMCGNP 157
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID-PSFHEGIIA----RYGLDSDVTRVEVC 285
+ SG FY+ NK D+K TR V +D P + IA +YG SDV RV V
Sbjct: 158 TKTSGVFYDSHNKDRADYK-----TRKVSCLDSPRTSKDNIAMLKRKYGEGSDVWRVRVE 212
Query: 286 GQFPQQDIDSFIPLNIIEEA---LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI 342
G+FP+ D+FI L + E A + EP D L +G D+A G D T + GP I
Sbjct: 213 GEFPRGGSDTFISLEVAEFAAKEVKLEPTGD---MLTIGVDVARFGDDETSMFAGIGPRI 269
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPD-------AIIIDANNTGARTCDYL------EM 389
K T + L ++ + I +D + G D L E
Sbjct: 270 VGEHHHFKKGTMVTAGWVINLAKELQVAHPYLNRIRIRVDDSGVGGGVTDRLSEIVAEEG 329
Query: 390 LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE--FASLINHSGLIQNLK------- 440
L Y + + ++D E N TE+ + + LE ++ +N I L
Sbjct: 330 LPYEIIPINNGSSSLD-EHYGNLVTEMWASIKEQLEQNMSNFMNGDSSILQLPDDDVLIT 388
Query: 441 --SLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAE 478
+ + + + + G++ +ESK + +G KS D +D + TF E
Sbjct: 389 QLTARKWNMTSKGKMLLESKKDMKKRGLKSPDRADAFVLTFGE 431
>gi|255282256|ref|ZP_05346811.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
gi|255267204|gb|EET60409.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
Length = 506
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 124/257 (48%), Gaps = 19/257 (7%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A+ +G+G+GKT + A VLW +S V+ A + QL LW+E++KW P
Sbjct: 68 AVKSGQGVGKTGIEAVAVLWFLSCFRYARVVATAPTRQQLHDVLWSEIAKWQERSP---- 123
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
L W ++ G + K + + RT + +P+ G H M I DEA
Sbjct: 124 -----LLKAILRWTKTYVYVK-GYE-KRWFAVARTAT--KPENMQGFHED-NMLFIVDEA 173
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
SG D I +LG L+ N +M NP R +G FY+ F K + + +
Sbjct: 174 SGVADPIMEAVLGTLS--GGNNKLLMCGNPTRTTGTFYDAFTKDRSIFACHTVSSLDSSR 231
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE---PCPDPYAP 317
D + + +I +YG DS++ RV V G FP+QD D FI +I++ +R+ P A
Sbjct: 232 TDKNNIDALIRKYGEDSNLVRVRVKGLFPKQDDDVFISQELIDQCTSRQYELPESRGMAQ 291
Query: 318 LIMGCDIAEEGGDNTVV 334
+I+G D+A G D TV+
Sbjct: 292 VILGVDVARYGNDETVI 308
>gi|307308936|ref|ZP_07588619.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
BL225C]
gi|306900570|gb|EFN31183.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
BL225C]
Length = 472
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 114/427 (26%), Positives = 188/427 (44%), Gaps = 46/427 (10%)
Query: 76 EVFKG----AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
E FK + G GKT ++A + W + + V A SE+ +K+ +W E
Sbjct: 42 EAFKNNQTITVKGSSGWGKTFISAISLWWSLIVFDPVKVTIFAPSESTIKSGIWNE---- 97
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL-GIDSKHYSTMC----RTYSEERPDTFVG 186
+Q L + AP + ++ S I K C R S++ G
Sbjct: 98 -----------LQVLYSNMAPLFRELFEVSATKIFRKSRGETCWAEYRLVSKDNIAAARG 146
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP-- 244
H+ + +I DEASG DVI G L + ++ SNP + SG F++ + P
Sbjct: 147 FHSKNNI-VIADEASGIEDVIFTGALLNVLNDGPGAKVVLVSNPDKASGFFFKTWRDPEL 205
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
DW + R P E YG + S V G+FP D+D I ++
Sbjct: 206 SKDWIKVHGSIRDKPNYTPGEEERFARLYGGVTSRDYLTLVEGEFPLSDVDGLISREFLD 265
Query: 304 EAL-NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
EA+ N++ P+P AP+I G D A G D +V+ +R V+ +W+ + ++
Sbjct: 266 EAVTNKDAIPNPKAPIIWGLDPAGAGKDKSVLAIRHDNVLRGFEEWAGLEPVALALRVKE 325
Query: 363 LV----EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ---KRAVDLEFCRNRRTE 415
L +K RP I +D N GA D L+ VY+ + KR D + R R +
Sbjct: 326 LYLKTSKKDRPAVIAVDGNGLGAGVYDALKHFKIPVYKCMFAEVPKRNPD-RYTR-VRDQ 383
Query: 416 LHVKMADWLEFA--SLINHSGLIQNLKSLKSFIVPNTGELAIESKRV---KGAKSTDYSD 470
+ +M +W+ S+ NH LI++L ++ ++ ++ ++ IE K+ + +S DY+D
Sbjct: 384 IWFEMREWIHTGDVSIPNHKKLIEDL-AIPTY--EDSPKIKIEDKKSLKKRLGRSPDYAD 440
Query: 471 GLMYTFA 477
L TF+
Sbjct: 441 ALALTFS 447
>gi|253578914|ref|ZP_04856185.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849857|gb|EES77816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 473
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 134/264 (50%), Gaps = 22/264 (8%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
NP+V +I +G+G+GKT L A + LW ++ P ++ A ++ QL LW+E+SKW+S
Sbjct: 32 NPKV---SIKSGQGVGKTGLEAAVFLWFVTCFPHPRIVATAPTKQQLHDVLWSEISKWMS 88
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
E+ S+ L Y ++ + K + + RT + +P+ G H M
Sbjct: 89 K------SELLSILLKWTKTYVYMVG-----EEKRWFGVARTAT--KPENMQGFHED-NM 134
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
I DEASG D I ILG L+ AN ++ NP + SG FY+ + +K +
Sbjct: 135 LFIVDEASGVADPIMEAILGTLS--GANNKLLLCGNPTKTSGTFYDSHTRDRALYKCHTV 192
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR---EP 310
+ + + ++ +YG DS+V RV V G+FP Q+ D FIPL++IE+ ++
Sbjct: 193 SSMDSTRTNKENIDSLVRKYGWDSNVVRVRVRGEFPNQEDDVFIPLSLIEQCSSKLLELD 252
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVV 334
D + +G D+A G D T++
Sbjct: 253 DADGMQFVSLGVDVARFGDDETII 276
>gi|167767949|ref|ZP_02440002.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
gi|167710278|gb|EDS20857.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
gi|291560988|emb|CBL39788.1| hypothetical protein CL2_30180 [butyrate-producing bacterium SSC/2]
Length = 473
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 141/319 (44%), Gaps = 24/319 (7%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
K I +G+G+GKT A +LW +S V+ A + QL LWAEVSKW S P
Sbjct: 49 KVTIKSGQGVGKTGFEAATLLWFLSCFENARVVATAPTLHQLNDVLWAEVSKWQSKSP-- 106
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
L ++ +G + Y+ + RT + P+ G H M I D
Sbjct: 107 --------LLKEILQWTKTKISMIGSKERWYA-VARTAT--TPENMQGFHED-NMLFIVD 154
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
EASG D I ILG LT +N ++ NP + SG FY+ + +++
Sbjct: 155 EASGVADPIMEAILGTLT--GSNNKLLLCGNPTKASGTFYDSHTSDRKLYYCITVNSAES 212
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ + + +I +YG +S+V RV V G FP+QD D ++PL ++E ++ E P P
Sbjct: 213 KRTNKDNIDSLIRKYGEESNVVRVRVKGLFPKQDDDVYMPLEMLEASIILEEIP-PADIC 271
Query: 319 IMGCDIAEEGGDNTVVVLRRG-----PVIEHLFDWSKT--DLRTTNNKISGLVEKYRPDA 371
+G D+A G D+TV+ I H D KT D+ I + +
Sbjct: 272 TLGVDVARFGDDDTVIARNMNNKITLEKIRHGQDLMKTVGDVVVECRNIKEKFKYKKTIY 331
Query: 372 IIIDANNTGARTCDYLEML 390
+IID G D L L
Sbjct: 332 VIIDDTGLGGGVTDRLNEL 350
>gi|332980681|ref|YP_004462122.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
gi|332698359|gb|AEE95300.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
Length = 486
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 113/442 (25%), Positives = 178/442 (40%), Gaps = 64/442 (14%)
Query: 79 KGAISAGRGIGKTTLNAWLVLW-LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
+ A+ + G GK+ + ++LW L S P I V+ A + Q++ +W EV
Sbjct: 46 RTAVRSCHGAGKSFIAGQVILWFLYSFYPSI-VLSTAPTWRQVEKLIWKEVRA------- 97
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
S P ++L I S PD F G H + ++
Sbjct: 98 -------SYRRSKVPLGGNLLPKRPEIQIIQDEWYAVGLSTNEPDRFQGFHEE-NILVVV 149
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
DEA+G P+ I I G LT +A ++ NP + G FY F P W+ I T
Sbjct: 150 DEAAGVPEEIFEAIEGVLTSEHAR--LLLLGNPTSVGGTFYNAFRTP--GWENISISAFT 205
Query: 258 VEG-----------------------------IDPSFHEGIIARYGLDSDVTRVEVCGQF 288
I P++ R+G +S + V GQF
Sbjct: 206 TPNFTAFGITEDDIINKTWESKITNSLPNPKLITPAWVADKYRRWGPNSPAYQARVLGQF 265
Query: 289 PQQDIDSFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
P + D+ IPL IE A+ R E P+ P+ +G D+A G D TV+ RRG + L
Sbjct: 266 PSEGEDTLIPLAWIEAAMARWEDTPE-GEPIEIGVDVARFGSDKTVIAARRGQKVLPLNV 324
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLE 407
++K D T I + K +D GA D L+ G+ V + + A D E
Sbjct: 325 YAKQDTMETVGCIIMVHRKIGASKTKVDVIGVGAGVVDRLKEQGHPVIGINVAEAATDTE 384
Query: 408 FCRNRRTELHVKMADWLEFASLIN--------HSGLIQNLKSLKSFIVPNTGELAIESK- 458
N R+EL M + L+ +N L+ +L +K + + + G + +ESK
Sbjct: 385 KFANLRSELWWNMRELLDPNQRLNPEPIALPPDDELLADLSGVK-YKIDSRGRIQVESKE 443
Query: 459 --RVKGAKSTDYSDGLMYTFAE 478
+ + +S D +D ++ FA+
Sbjct: 444 DMKKRLGRSPDRADAVVLAFAK 465
>gi|315122636|ref|YP_004063125.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496038|gb|ADR52637.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 301
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQ----L 56
M+ N E + L + S I + F + + WGE+GTPL PR+WQ L
Sbjct: 1 MNATFQPNIEYDTALLQNVLSPAIAGNPLAFTKYMYRWGEEGTPLANCKGPRAWQTEVFL 60
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E E ++ + +VFK AI++ RGIGKT L AW+ W +STR G +V+ ANS
Sbjct: 61 ELAEFIEKNKEAKRLGKPLQVFKLAIASARGIGKTALVAWITYWFLSTRIGCTVVISANS 120
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQS----LSLHPAPWYSDVLHCSL 162
+ Q KTT +AE+ +W SL N H+FE L+ +PW ++ + +L
Sbjct: 121 DDQCKTTSFAEIRRWHSLAKNAHFFEANIAEALLAGGCSPWQAEPVAKTL 170
>gi|83593922|ref|YP_427674.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
gi|83576836|gb|ABC23387.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
Length = 505
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 121/468 (25%), Positives = 183/468 (39%), Gaps = 72/468 (15%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P K + AG G+GKTT A + W + C A + +QL+ LW+E+++
Sbjct: 34 PAGAKVTVRAGHGVGKTTATAAAIWWHLECFDYSKTPCTAPTASQLEQILWSELAR---- 89
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGI------DSKHYSTMCRTYSEERPDTFVGHH 188
L + Q L PA + L G + + + RT ++PD G H
Sbjct: 90 LRRRADARAQGTGL-PAALRLEALFAVSGRAIADRGTPREWFVVARTARRDQPDALQGFH 148
Query: 189 ----------------NTYGMAI--INDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ G A+ + +EASG PD + G L+ A +M NP
Sbjct: 149 ASDIDLEAGAGPRLSAKSGGAALMFVIEEASGVPDAVFEVAEGALSSPGAR--LLMVGNP 206
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
R +G F + + ++ +DP + G++ +YG +S+V RV G FP+
Sbjct: 207 TRNTGFFARSHKRDRASFTALRLRCADSPLVDPGYRAGLVRKYGAESNVVRVRADGAFPR 266
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAP---LIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
QD D I L E AL R P P A +G D+A G D TV +LR GPV+ +
Sbjct: 267 QDDDVLIALETAEAALAR-PLPARMATEDERRLGVDVARFGDDRTVFLLRIGPVVGAIEV 325
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG----YHVYRVLGQKRA 403
+ D + L E +R I +D GA D L G +RA
Sbjct: 326 TAGRDTMAVAGRARRLAEIWRAGRIYVDEIGVGAGVVDRLREDGAPVVAVNVAASAPERA 385
Query: 404 VDLEFCRNRRTELHVKMADWLE-----------------FASLINHSG----------LI 436
E R R L + + WL A L++ G L
Sbjct: 386 AGEERGRLLRDHLWLMVRGWLRDEAPVFAGPGGGPASGSAAGLLSGMGSCLVPGVDADLA 445
Query: 437 QNLK---SLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAE 478
Q+L + + +G + +ESK + +G +S D +D L TF E
Sbjct: 446 QDLAGELATPRYAFDGSGRVVVESKDAMKRRGLRSPDLADALALTFHE 493
>gi|262316909|emb|CBA18135.1| putative terminase B [Paenibacillus phage phiBP]
Length = 248
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 16/208 (7%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
++ +G+G+GKT L A + LW + P V+C A + QL LWAE+SKW S P
Sbjct: 57 SVRSGQGVGKTALEAAISLWFLCCFPFPRVVCTAPTRQQLNDVLWAEISKWQSQSP---- 112
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ W ++ + + ++T RT + +P+ G H Y M I DEA
Sbjct: 113 -----ILKRILKWTKTKIYMK-NYEERWFAT-ARTAT--KPENMQGFHEDY-MLFIVDEA 162
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
SG D I I G L+ F M NP + SG F++ N+ ++ ++
Sbjct: 163 SGVDDRIMAAIFGTLSGDYNKLF--MCGNPTKTSGFFFDSHNRDRAIYRTHRVSCLDSPR 220
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQF 288
E + A+YG SDV RV V G+F
Sbjct: 221 TSKENIEMLKAKYGEGSDVWRVRVLGEF 248
>gi|48697461|ref|YP_024846.1| Pas60 [Actinoplanes phage phiAsp2]
gi|47679679|gb|AAT36808.1| Pas60 [Actinoplanes phage phiAsp2]
Length = 492
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 149/361 (41%), Gaps = 37/361 (10%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
+P +W + ++V A + + P + A+ G+GK+ A LV W +TR +
Sbjct: 22 SPTAWAADCLDVRLAGYQGEILDAVPRERRVAVRGPHGLGKSFSGAILVNWFATTRDLMG 81
Query: 110 ----VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
+I A++ L+ LW E+ KW + ++L AP+ L +
Sbjct: 82 KDWKIITTASAWRHLEVYLWPEIHKWAG--------RINFVALGRAPYNPRTELLDLRLK 133
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA----N 221
H + + +P+ G H + ++ DEA P I G + N
Sbjct: 134 LTHGAATA--VASNQPERIEGAHAEELLYLL-DEAKIVPPATWDSIEGAFSNAGVDVADN 190
Query: 222 RFWIMTSNPRRLSGKFYEIFNKP--LDDW--KRFQIDTRTVEG-IDPSFHEGIIARYGLD 276
+ S P SG+FY+I + +DW + ++ G I ++ + +++G D
Sbjct: 191 AYAFAMSTPGAPSGRFYDIHRRAPGYEDWWTRHVTLEEAIASGRISRAWADQRRSQWGSD 250
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEAL------NREPCPDPYAPLIMGCDIAEEGGD 330
S V V G+F D DS IPL +E A+ +R+ P P PL G D+ GGD
Sbjct: 251 SAVFHNRVLGEFHASDEDSVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDVG-RGGD 309
Query: 331 NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
TV+ R G + +T+ R GL++ R IID GA D L L
Sbjct: 310 ETVLAARDGWAVT-----LETNRRRDTMATVGLIQA-REGRAIIDVIGLGAGVFDRLREL 363
Query: 391 G 391
G
Sbjct: 364 G 364
>gi|228924410|ref|ZP_04087639.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835241|gb|EEM80653.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 293
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 125/280 (44%), Gaps = 32/280 (11%)
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
+ NP R SG FY+ N+ D +K ++ + E + +YG SDV RV V
Sbjct: 3 LCGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVL 62
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL 345
G+FP+ + D+FIPL I+E+A + + P L +G D+A G D TV+ R G + L
Sbjct: 63 GEFPKAEADAFIPLEIVEQAASCKVEPTGET-LDLGVDVARFGDDETVIAPRIGNKVFKL 121
Query: 346 FDWSKTDLRTTNNKISGLVEKY--------RPDAIIIDANNTGARTCDYL------EMLG 391
+ K D T + L ++Y R D I +D + G D L E L
Sbjct: 122 LNHYKQDTMETAGHVLKLAKEYMAKYKQLKRVD-IKVDDSGVGGGVTDRLKEVIKSERLP 180
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE------------FASLINHSGLIQNL 439
+ VY V+ + +D E N E + D LE + N +I
Sbjct: 181 FKVYPVVNNGKPLDDEHYDNAGAEGWAVVRDLLEENMKAFIQGEEPTMEIPNDEKMISQF 240
Query: 440 KSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
S K + + + G++A+E K + +G +S D +D ++ F
Sbjct: 241 SSRK-YRITSRGKIALERKEEMKKRGLQSPDRADAIVLAF 279
>gi|292670767|ref|ZP_06604193.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292647388|gb|EFF65360.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 442
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 5/202 (2%)
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY--APLIMGCDIAEEGGDNTVVVLRR 338
R E+ F D IP++++ A NR D P+I+G D+A G D TV+ +R+
Sbjct: 214 RQELLCDFTASASDVVIPIDLVTAAANRLLKDDDVLGQPVILGVDVARFGDDRTVLCVRQ 273
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
G ++ + ++ T +++ + ++ P A IDA GA D L L Y V V
Sbjct: 274 GLWLKEVRTFTGLSTMETASRVIDCINQHHPHATFIDAGAMGAGVIDRLRQLRYQVSEVN 333
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK 458
+ A+D N R E++ K WLE I + ++ S + TG + +E K
Sbjct: 334 FGEMAMDAARYANIRAEMYFKCRAWLEAGGAIPQNAELKTELSTVEYKFNPTGRIILEPK 393
Query: 459 ---RVKGAKSTDYSDGLMYTFA 477
+ + KS D +DG + TFA
Sbjct: 394 DKLKERTGKSPDLADGFVLTFA 415
>gi|315649222|ref|ZP_07902312.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
gi|315275441|gb|EFU38799.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
Length = 189
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 99/223 (44%), Gaps = 45/223 (20%)
Query: 15 LFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
L DL W D + +F+ ++ F P WQ + M ++ P
Sbjct: 11 LLDLYWDDPV--AFAEDMMGF--------------DPDDWQCDVM-------MDVTQFP- 46
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
+ ++ +G+G+GKT L A LV+W + RP V+C A ++ QL LW EVSKWL
Sbjct: 47 ----RTSVRSGQGVGKTGLEAALVIWFLCCRPNPKVVCTAPTKQQLHDVLWTEVSKWLE- 101
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
S+ + W ++ +G + + ++T + +P+ G H Y M
Sbjct: 102 ---------NSMVKNLLKWTKTKVY-MIGHEQRWFAT---ARTANKPENMQGFHEDY-ML 147
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
I DEASG D I ILG L+ A +M NP R SG F
Sbjct: 148 FIVDEASGVSDPIMEAILGTLS--GAENKLLMCGNPTRTSGVF 188
>gi|257459276|ref|ZP_05624390.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
gi|257443289|gb|EEV18418.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
Length = 431
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 113/256 (44%), Gaps = 10/256 (3%)
Query: 236 KFYEIFNKPLDD---WKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQQ 291
KF+++ + + + W+ FQ + + + ++A G DSDV R E+ G+F
Sbjct: 161 KFFDLAQRGMRNEKGWRNFQFSSYDNPLLQKEEIDRLVAELGGADSDVARQEIFGEFLDT 220
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+S L IE A ++ D AP+I D+A EG D +V+ R+G +E L +
Sbjct: 221 TSNSVFSLAAIEAAFRKQRYFDAGAPVIWALDVAREGDDESVLCKRQGDSVEPLKPYRIA 280
Query: 352 DLRTTNNKISGLVEK--YRPDAIIIDANNTGARTCDYLEMLGYH--VYRVLGQKRAVDLE 407
+I G E+ +P AI ID GA D L LG V G +A D
Sbjct: 281 STSELAREIYGEYERTDLKPHAIYIDTIGVGAGVFDTLCDLGLRGIVREAKGSFKASDER 340
Query: 408 FCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKG--AKS 465
N+R E++ + + L ++ L + L+++ + L + + +K +S
Sbjct: 341 KYANKRAEMYFNLREKLPLLAIAPDEELKRQLQTIAFYFDKKERYLLMPKEGIKKEYGRS 400
Query: 466 TDYSDGLMYTFAENPP 481
D +D L +F + P
Sbjct: 401 PDRADALAMSFFDLCP 416
>gi|226940459|ref|YP_002795533.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715386|gb|ACO74524.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 272
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 103/243 (42%), Gaps = 8/243 (3%)
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
W QID+RTVEG + YG +SD +V V G FP FI + A
Sbjct: 14 WVARQIDSRTVEGTNKEQIAKWAEDYGEESDFFKVRVRGMFPSMSARQFISETDVSAAYG 73
Query: 308 REPCPD--PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
R P+ YAP I+ D A EG D V+ LR+G L +K D ++ E
Sbjct: 74 RALRPEQYQYAPKILTVDPAWEGDDEFVIGLRQGLSFRVLHTMAKNDNDLVAAQVIARYE 133
Query: 366 KYR-PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL 424
DA+ +DA G + +G V ++D C N+R E+ DWL
Sbjct: 134 DEEGADAVFVDA-GFGTGIVSAGKSMGRDWTLVWFAGNSMDAG-CLNKRAEMWRDARDWL 191
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPP 481
+ I ++++ + G++ IESK + +G S + +D L+ +FA
Sbjct: 192 KSGGAIPDDPVLRDELQAPEIVPRLDGKIQIESKKEMKARGVPSPNRADALILSFAYPVT 251
Query: 482 RSD 484
R D
Sbjct: 252 RRD 254
>gi|154175204|ref|YP_001409090.1| Ppx/GppA family phosphatase [Campylobacter curvus 525.92]
gi|112803006|gb|EAU00350.1| phosphatase, Ppx/GppA family [Campylobacter curvus 525.92]
Length = 433
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 121/258 (46%), Gaps = 24/258 (9%)
Query: 236 KFYEIFNKPL---DDWKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQQ 291
+F+++ ++ + DW FQI + + + +IA G +DSDV + E+ G+F
Sbjct: 161 RFFDLASRGMRNEKDWVNFQISSFENPLLRKEEIDELIAELGGVDSDVVKQEIYGEFLDT 220
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--- 348
++ PL+ IE A + +P A I G D+A +G D +V+ +R G +++L +
Sbjct: 221 TTNALFPLSQIEAAFGKVRAYEPNAVQIWGLDVARDGDDESVLCVREGYHVKNLEGFRIA 280
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EM-LGYHVYRVLGQKRAVDL 406
S T+L + + EK +P+AI ID+ GA T D L E LG +A +
Sbjct: 281 STTELAREIYRRYEMSEK-KPEAIFIDSVGVGAGTFDRLCEFGLGAICREAKASYKATNE 339
Query: 407 EFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSL--------KSFIVPNTGELAIESK 458
N+R E++ + + ++ H L + L+ + + I+P E K
Sbjct: 340 AKFANKRAEMYFALKEKFHLLTMNAHEKLKKQLQMIEFQYDRKERYLILPKD-----ELK 394
Query: 459 RVKGAKSTDYSDGLMYTF 476
+ G S DY+D L TF
Sbjct: 395 KEYGT-SPDYADALALTF 411
>gi|119386463|ref|YP_917518.1| PBSX family phage terminase large subunit [Paracoccus denitrificans
PD1222]
gi|119377058|gb|ABL71822.1| phage terminase, large subunit, PBSX family [Paracoccus
denitrificans PD1222]
Length = 441
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 19/206 (9%)
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG------ 339
G + + FI ++ EA+ R+P L++G D+A G D +V+ RRG
Sbjct: 214 GDYEAESDMQFIGGGLVREAMARQPFSQIGDELVLGVDVARFGDDRSVIWARRGRDAQTE 273
Query: 340 -PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV- 397
P+I D ++ +++ PD + ID G D +GY V V
Sbjct: 274 LPIIMK-----GADTMAVAARVMAEIDRLHPDGVFIDEGGVGGGVIDRCRQMGYSVVGVN 328
Query: 398 LGQK--RAVD-LEFCRNRRTELHVKMADWLEFASLINHS-GLIQNLKS-LKSFIVPNTGE 452
G K RA++ + CRN+R ++ M +WL I S L +L L SF V N E
Sbjct: 329 FGGKADRAIEGVPKCRNKRAQMWATMREWLRSGGCIPDSRDLEMDLTGPLYSFDVNNAIE 388
Query: 453 LAIESK-RVKGAKSTDYSDGLMYTFA 477
+ +S + +G S D +D L TFA
Sbjct: 389 IEKKSDMKKRGVSSPDEADALALTFA 414
>gi|56266666|gb|AAV84947.1| DNA pacase B subunit [Enterobacteria phage D6]
Length = 502
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/345 (25%), Positives = 144/345 (41%), Gaps = 44/345 (12%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++ + +
Sbjct: 56 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
H + L +Y GI + +C+ Y + G H + + +I D
Sbjct: 116 HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAH-LLLILD 167
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-------NKPLDDWKRF 251
EASG D + G LTE + NR +M S P R SG FY+ + P W
Sbjct: 168 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 225
Query: 252 QIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+++ + P F + + Y G DS V+V GQFP++ + + + A R+
Sbjct: 226 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 285
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI---SGLV--- 364
+ + D+ G D +V+ + + V H + R N K+ SG +
Sbjct: 286 LLEKNWGWVATADVG-NGRDKSVLNICK--VSGH-----RDKRRVVNFKVMEMSGTMDPL 337
Query: 365 ------------EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
EKY I +DA+ G+ TC L G + R+
Sbjct: 338 AFADFIYNECTPEKYPNITIAVDADGFGSDTCAQLVRRGANPVRI 382
>gi|303257560|ref|ZP_07343572.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
gi|302859530|gb|EFL82609.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
Length = 330
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 6/202 (2%)
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY--APLIMGCDIAEEGGDNTVVVLRR 338
R E F + IP++ I A N+ Y APLI G D+A G D +V+ RR
Sbjct: 95 RQEFLCDFSAAQDNGLIPIDDIRAAANKFYRESEYMGAPLIYGIDVARFGSDASVIFKRR 154
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
G V K D ++I+ + K +PDA+ ID + G D L + + V V
Sbjct: 155 GLVAFEPIVIRKFDNMALADRIAVEMAKEKPDAVFID-SGAGQGVIDRLRQMRFDVVEVP 213
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK 458
+A+D E NRR E+ MA W++ I ++Q ++ G +E+K
Sbjct: 214 FGAQAIDKEQFANRRMEMWWHMAQWIKQGGAIPPDPVLQGDLGAPTYGYTPKGPKILEAK 273
Query: 459 ---RVKGAKSTDYSDGLMYTFA 477
+ + +S D +D L TFA
Sbjct: 274 DKLKERIGRSPDLADALALTFA 295
>gi|216906085|ref|YP_002333619.1| terminase [Abalone shriveling syndrome-associated virus]
gi|216263178|gb|ACJ72002.1| terminase [Abalone shriveling syndrome-associated virus]
Length = 507
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 109/450 (24%), Positives = 182/450 (40%), Gaps = 46/450 (10%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQLE ++ + A ++ V A+S G G GKT L+ L +W PG L
Sbjct: 51 WQLEIVDYI-AKFFRKNSDEKHFVCAIAVSGGNGTGKTKLSKALNIWRFCCHPGSRQFIL 109
Query: 114 ANSETQLK----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
NSE Q K T L +SK LS + ++S + + +P +D D
Sbjct: 110 TNSERQTKRTGFTMLVRRISKLLSCIA-----ALESSAYYYSPAVADKPEVRTN-DMWDV 163
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ + ++ +E G H+ M DE++ D + + T+ F T N
Sbjct: 164 TYLLQSSTEA---ALSGLHHPM-MTFSFDESTYFNDHVWQALENMWTQGQVLCF--CTGN 217
Query: 230 PRRLSGKFY-EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR-------YGLDSDVTR 281
P + ++ +FNK L + TR V ++ AR YG
Sbjct: 218 PSHDNNNYFARLFNKSLHKKDSLWL-TRCVSLLELPLKYRNDARARYIEEHYGKTHPRYI 276
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPD-PYAPLIMGCD--IAEEGGDNTVVVLRR 338
V GQFP+++ + + I EA+ RE + + P+IMG D I+ G + + +R
Sbjct: 277 ASVLGQFPKKNTCNPFDITAISEAMEREVREEFIHHPVIMGIDVSISANNGSASAICVRE 336
Query: 339 GPVIEHLFDW--SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-----EMLG 391
G + L ++ T+ R K+ L+++ +P +++DAN G + L E
Sbjct: 337 GTAVRVLREYRCHYTEFRI---KLLELLQEIKPTIVVVDANGVGFGLYEELHRTLPETSN 393
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL--EFASLINHSGLIQNLKSLKSFIVPN 449
VY V A ++ +EL K ++W E S+ + + L SL
Sbjct: 394 VRVYGVRAHAEAFLKSEYADKMSELAKKSSEWFNNELVSIPKNYQFLNALTSLS--FADA 451
Query: 450 TGELAIESKRVKGAK---STDYSDGLMYTF 476
+G++ + K K S D +D TF
Sbjct: 452 SGKIKLIGKTDAKKKVDLSMDMADAFFLTF 481
>gi|323179619|gb|EFZ65182.1| terminase B protein [Escherichia coli 1180]
Length = 453
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 142/345 (41%), Gaps = 44/345 (12%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++ + +
Sbjct: 7 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 66
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
H + L +Y GI + +C+ Y + G H + + +I D
Sbjct: 67 HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAH-LLLILD 118
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-------NKPLDDWKRF 251
EASG D + G LTE + NR +M S P R SG FY+ + P W
Sbjct: 119 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 176
Query: 252 QIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+++ + P F + + Y G DS V+V GQFP++ + + + A R+
Sbjct: 177 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRAARRKV 236
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL------- 363
+ + D+ G D +V+ + + V H + R N K+ +
Sbjct: 237 LLEKNWGWVATADVG-NGRDKSVLNICK--VSGH-----RDKRRVVNFKVMEMPGTMDPL 288
Query: 364 -----------VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
EKY I +DA+ G+ TC L G + R+
Sbjct: 289 AFADFIYNECTPEKYPNITIAVDADGFGSDTCAQLVRRGANPVRI 333
>gi|323948959|gb|EGB44853.1| terminase B protein [Escherichia coli H252]
Length = 502
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 18/221 (8%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++ + +
Sbjct: 56 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
H + L +Y GI + +C+ Y + G H + + +I D
Sbjct: 116 HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAH-LLLILD 167
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-------NKPLDDWKRF 251
EASG D + G LTE + NR +M S P R SG FY+ + P W
Sbjct: 168 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSRAKTPDNPKGIWTAI 225
Query: 252 QIDTRTVEGIDPSF-HEGIIARYGLDSDVTRVEVCGQFPQQ 291
+++ + P F E ++ G DS V+V GQFP++
Sbjct: 226 VLNSEESPFVTPQFIKEKLLEYGGRDSIEYMVKVLGQFPRE 266
>gi|322656964|gb|EFY53248.1| DNA packaging protein [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
Length = 411
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 18/221 (8%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++ + +
Sbjct: 56 RTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWANAVKR 115
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
H + L +Y GI + +C+ Y + G H + + +I D
Sbjct: 116 HGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAH-LLLILD 167
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-------NKPLDDWKRF 251
EASG D + G LTE + NR +M S P R SG FY+ + P W
Sbjct: 168 EASGISDKAIGVMTGALTEED-NRM-LMLSQPTRPSGYFYDSHHSQAKTPDNPKGIWTAI 225
Query: 252 QIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQ 291
+++ + P F + + Y G DS V+V GQFP++
Sbjct: 226 VLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPRE 266
>gi|269119479|ref|YP_003307656.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
gi|268613357|gb|ACZ07725.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
Length = 499
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 107/476 (22%), Positives = 189/476 (39%), Gaps = 81/476 (17%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF----KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
F ++++ H L+ + F + ++ AG GK++L L + + TRP VI
Sbjct: 22 FKDILNFHFLSEDQTRVLQAFNEYRRLSVPAGHSTGKSSLAGGLTTYWLITRPKSRVIVT 81
Query: 114 ANSETQLKTTLWAEVSK--------WLSLLP-------------NKHWFEMQSLSLHPAP 152
A + QLKT WAEV+K L+L + WF + + P
Sbjct: 82 APTYRQLKTIYWAEVNKIYNRSKLKQLNLFEINDKIMRINDKDLKREWFALPVTASTPEG 141
Query: 153 WYS---------DVLHCSLGI----DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + LGI D + + + E+ + + + ++ DE
Sbjct: 142 MQGQHGDKTEVIEQIMKHLGIEEIGDDETIEIVSQILRGEKQIEGLTKEDKEKLLVMVDE 201
Query: 200 ASGTPDVI----------NLGILGFLTERNANRFWIMTSNPRRLSGKFYEI----FNKPL 245
+SG + I L + G +T +N F+ NP+ KFY++ +N P
Sbjct: 202 SSGVKNEIFEVLEGTDYDKLVLFGNMT-KNTGYFYESVYNPK---SKFYKVTMSSYNSPF 257
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
K+ QI H+ + YG DS+V RV + G+ P + +S N I+ A
Sbjct: 258 --MKKEQI------------HD-LEETYGPDSNVVRVRLKGEAPDGNENSIFSSNKIDSA 302
Query: 306 LNREPCPDPYAPLIMGCDIAE-EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLV 364
R Y + +G D+ + GGD++ + ++ + D L +I
Sbjct: 303 FQRSLSLSEYETIKLGVDVGKGSGGDSSTIYEKKDNRVRKKLDRKDFTLPDVKREIIQYC 362
Query: 365 EKYRPDAIIIDANNTGART-----CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
K R II + + TG T + E+ V + +A + + N+RTE++ +
Sbjct: 363 YKNRDKLIIANIDGTGLGTGLVQELEEGEIENLVVNDIQFAGKAKNKKEFNNKRTEMYFE 422
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK-RVKG--AKSTDYSDGL 472
++ L+ L L + L ++ + N G + SK ++K S D SD L
Sbjct: 423 LSRNLDKLDLEEDQELKREL-LIQIYEFDNNGRFKLISKDKIKEMLGHSPDKSDAL 477
>gi|153951273|ref|YP_001397540.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|153951467|ref|YP_001398214.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938719|gb|ABS43460.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938913|gb|ABS43654.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 430
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 107/256 (41%), Gaps = 20/256 (7%)
Query: 237 FYEIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGIIARY-----GLDSDVTRVEVCGQFP 289
FYE+ K L D WK FQ + +P E I G SDV R E+ G+F
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYD----NPFLKEEQIKELIEEVGGESSDVVRQEIYGEFI 219
Query: 290 QQDIDSFIPLNIIEEALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
L+ IE A+++ I G D+A G D +V+ R+G VI+ L
Sbjct: 220 DSSSAELFSLSGIENAMSKNSFSTQKMQGENIWGLDVARYGDDKSVLAKRKGFVIDELKK 279
Query: 348 WSKTDLRTTNNKISGLVEKY--RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+S+ NKI ++ +P I ID G D L G V+ A
Sbjct: 280 YSQLGTIELANKILAEYKQSEEKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSANSATS 339
Query: 406 LEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKG 462
++ N+R +++ A L+ L+ L +++ ++ + + G L I SK +
Sbjct: 340 NQYL-NKRAQMYFTFAKNLKHMELVKDEELKNDMRRIE-YEYSDKGLLKIVSKEQLKKNY 397
Query: 463 AKSTDYSDGLMYTFAE 478
KS D SD + TF E
Sbjct: 398 GKSPDLSDAVALTFFE 413
>gi|304399103|ref|ZP_07380971.1| DNA packaging protein [Pantoea sp. aB]
gi|304353343|gb|EFM17722.1| DNA packaging protein [Pantoea sp. aB]
Length = 503
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 115/275 (41%), Gaps = 37/275 (13%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
+E F +WQ E +NSV + +++G G GK++L A ++L M
Sbjct: 32 VELFGMIPTWQQE-------EIMNSVQETGSQT---TVTSGHGTGKSSLTAMMLLIYMIM 81
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
P VI +AN Q+KT ++ V + + +H + +L +Y GI
Sbjct: 82 YPDARVIIVANKIGQVKTGVFKYVKTYWANAARRHPWLQNYFTLTDTMFYE---KSRKGI 138
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
+ +C+ Y + G H + + I+ DEASG D + G LTE + NR
Sbjct: 139 ----WEVLCKGYRLGNEEALAGEHAAHILLIL-DEASGISDKAIAIMRGALTEED-NRM- 191
Query: 225 IMTSNPRRLSGKFYEIF-------NKPLDDWKRFQIDTRTVEGIDPSF-HEGIIARYGLD 276
+M S P R SG FY+ + P W +++ + F E ++ G D
Sbjct: 192 LMMSQPTRPSGYFYDSHHSLARHPDNPNGFWNAIVLNSEEAPHVTLKFIREKLVEYGGRD 251
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
S V+V G+FP+ N+ L R+ C
Sbjct: 252 SLEYMVKVLGRFPR---------NVSGYLLGRDEC 277
>gi|283956317|ref|ZP_06373797.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
gi|283792037|gb|EFC30826.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
Length = 430
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 107/256 (41%), Gaps = 20/256 (7%)
Query: 237 FYEIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGIIARY-----GLDSDVTRVEVCGQFP 289
FYE+ K L D WK FQ + +P E I G DS+V + E+ G+F
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYD----NPFLKEEQIKELIEEVGGEDSEVVKQEIYGEFI 219
Query: 290 QQDIDSFIPLNIIEEALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
L IE A+++ I G D+A G D +V+ R+G +++ +
Sbjct: 220 DSSSAELFALTEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSVLAKRKGFIVDEIKK 279
Query: 348 WSKTDLRTTNNKISGLVEKY--RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+S+ N+I + +P I ID G D L G V+ A
Sbjct: 280 YSQLGTMELANRILAEYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSANSATS 339
Query: 406 LEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKG 462
E+ N+R +++ A L+ L+ L ++++ ++ + + G L I SK +
Sbjct: 340 NEYL-NKRAQMYFTFAKNLKHMELVKDEELKKDMRMIE-YEYSDKGLLKIVSKEQLKKNY 397
Query: 463 AKSTDYSDGLMYTFAE 478
KS D SD + TF E
Sbjct: 398 GKSPDVSDAVALTFFE 413
>gi|212703250|ref|ZP_03311378.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
gi|212673294|gb|EEB33777.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
Length = 330
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 12/216 (5%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--PLIMGCDIAEEGG 329
R L + R E+ F D IPL + EA R+ D P+I+G D+A G
Sbjct: 79 RRELSDNAFRQEMLCDFTASSDDILIPLPDVLEAEARQLAWDDVGGMPVILGVDVARFGA 138
Query: 330 DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
D++V+V R+G ++ D ++++ + + RP A+ IDA G D L
Sbjct: 139 DSSVIVRRQGLKVDGPVVMRGLDNMQLADRVAAAIMENRPHAVFIDAGQ-GQGVIDRLRQ 197
Query: 390 LGYHVYRV-LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG----LIQNLKSLKS 444
LG+ V V G K + F NRR+E+ + WL+ + G ++ S
Sbjct: 198 LGHEVIEVPFGGKPLQEGRFA-NRRSEMWYGLRQWLKSGGKLPDEGDDVPRLRAELSAPL 256
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ G + +E K + + S D +D L TFA
Sbjct: 257 YWYDAAGRMVLEPKDKIKERLGASPDIADALALTFA 292
>gi|315929403|gb|EFV08605.1| phosphatase, Ppx/GppA family [Campylobacter jejuni subsp. jejuni
305]
Length = 430
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 104/256 (40%), Gaps = 20/256 (7%)
Query: 237 FYEIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGIIARY-----GLDSDVTRVEVCGQFP 289
FYE+ K L D WK FQ + +P E I G S+V + E+ G+F
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYD----NPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFI 219
Query: 290 QQDIDSFIPLNIIEEALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
L+ IE A+++ I G D+A G D + + R+G VI +
Sbjct: 220 DSSSAELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKK 279
Query: 348 WSKTDLRTTNNKISGLVEKY--RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+S+ NKI + +P I ID G D L G V+ A
Sbjct: 280 YSQLGTIELANKILAEYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSANSATS 339
Query: 406 LEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKG 462
E+ N+R +++ A L+ L L ++++ ++ + + G L I SK +
Sbjct: 340 NEYL-NKRAQMYFTFAKNLKHMELFKDEELKKDMRMIE-YEYSDKGLLKIVSKEYLKKNY 397
Query: 463 AKSTDYSDGLMYTFAE 478
KS D SD + TF E
Sbjct: 398 GKSPDVSDAVALTFFE 413
>gi|57237579|ref|YP_178593.1| terminase B protein, putative [Campylobacter jejuni RM1221]
gi|57166383|gb|AAW35162.1| terminase B protein, putative [Campylobacter jejuni RM1221]
Length = 430
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 12/252 (4%)
Query: 237 FYEIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGIIARYGLD-SDVTRVEVCGQFPQQDI 293
FYE+ K L D WK FQ + + + +I G + S+V + E+ G+F
Sbjct: 164 FYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSS 223
Query: 294 DSFIPLNIIEEALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
L+ IE A+++ I G D+A G D + + R+G VI + +S+
Sbjct: 224 AELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQL 283
Query: 352 DLRTTNNKISGLVEKY--RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
NKI + +P I ID G D L G V+ A E+
Sbjct: 284 GTIELANKILAEYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSANSATSNEYL 343
Query: 410 RNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKST 466
N+R +++ L+ L+ L ++++ ++ + + G L I SK + KS
Sbjct: 344 -NKRAQMYFTFTKNLKHMELVKDEELKKDMRMIE-YEYSDKGLLKIVSKEQLKKNYGKSP 401
Query: 467 DYSDGLMYTFAE 478
D SD + TF E
Sbjct: 402 DVSDAVALTFFE 413
>gi|168467778|ref|ZP_02701615.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|195629119|gb|EDX48493.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
Length = 494
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/381 (23%), Positives = 154/381 (40%), Gaps = 59/381 (15%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F +WQ + + SV P K ++S+G G GK+ + + +++ + PG
Sbjct: 30 FGKTPTWQQD-------QIIESVQEPGS---KTSVSSGHGTGKSDMTSIMIMLFIIMFPG 79
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
I +AN Q+ T ++ K+L + +W S + PW ++ + D+
Sbjct: 80 ARAIIVANKIQQVMTGIF----KYLKI----NW----STATSRFPWLAEYFVLT---DTS 124
Query: 168 HYSTMCRTYSEERPDTF--------VGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
Y + P F G H + + II DEASG D + G LT ++
Sbjct: 125 FYEITSKGVWTVVPKGFRLGNEEALAGEHADHLLYII-DEASGVSDKAFGIMTGALTGKD 183
Query: 220 ANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
NR ++ S P R SG FY+ +K P + +++ + P F + +A
Sbjct: 184 -NRI-LLLSQPTRPSGYFYDTHHKLAKRPGNPNGIYTAITLNSEESPLVTPEFIKMKLAE 241
Query: 273 Y-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIA-EEGGD 330
Y G DS + ++V G FP+ + + +E A R+ I D+A G D
Sbjct: 242 YGGRDSPMYLIKVRGLFPKTQDGFLLGRDEVERASRRKVKIAKGWGWIACVDVAGGTGRD 301
Query: 331 NTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISGLV--EKYRPDAIIIDANNTG 380
+V+ + +R + + ++S KI+ ++Y I+ID + G
Sbjct: 302 KSVINIMMVSGERNKRRIIGYRIIEYSDVTETQLAAKINAECSPDRYPNITIVIDGDGLG 361
Query: 381 ARTCDYLEMLGYHVYRVLGQK 401
T D L Y Y + Q+
Sbjct: 362 KSTADLL----YDNYGITAQR 378
>gi|282598783|ref|YP_003359102.1| putative large subunit terminase [Clavibacter phage CMP1]
gi|262212571|gb|ACY35907.1| putative large subunit terminase [Clavibacter phage CMP1]
Length = 872
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 132/339 (38%), Gaps = 49/339 (14%)
Query: 183 TFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
+F G H+ + +A++ DEA G P+ + +G T +A I NP + + F+E F
Sbjct: 511 SFQGIHDGH-VAVVLDEAGGLPEDLYIGANAVTTNFHARILAI--GNPDKRNTPFHERFT 567
Query: 243 --KPLDDWKRFQI---DTRTVEGI----DPSFHE-----------GIIARYGLDSDVTRV 282
+ W RF I DT G DP+ E + R V
Sbjct: 568 DTEKFSSWNRFTIGAEDTPNFTGEKIYEDPAKDEDVKKHLVQVSWAVEMRKSARPSVVAA 627
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI 342
+V G FP+ D +F ++I + E P+ MG DI+ +G D +V + G I
Sbjct: 628 KVDGNFPESDDTTFFDQSVINRGYSTEIEPESTDFKYMGVDISYQGEDQSVAYINHGGQI 687
Query: 343 EHLFDWSKTD--------LRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--- 391
+W++ D +R N V++ R ID TGA L+ML
Sbjct: 688 RIADEWNRFDGAEHIESAIRIHNKACQEGVQEVR-----IDMAGTGAGVYSNLKMLDQFK 742
Query: 392 ---YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL---INHSGLIQNLKSLKSF 445
Y + V G R + N R + + L + I L + ++ L+
Sbjct: 743 DKPYVLIGVNGANRTPNSNRWLNARAWHYDQFRTGLITGKIDITITDVDLKKEME-LQPS 801
Query: 446 IVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPP 481
N G+L I K R G S D+ D +Y+ + P
Sbjct: 802 TFTNRGQLQITRKDDMRKMGISSPDHLDAAIYSAIDTTP 840
>gi|148653111|ref|YP_001280204.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
gi|148572195|gb|ABQ94254.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
Length = 520
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 94/445 (21%), Positives = 178/445 (40%), Gaps = 60/445 (13%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ ++++G G GK+ + LW + P ++ A QL+T +W E++ L L N
Sbjct: 57 RTSVASGHGTGKSRSAGIIALWHLLFYPESVMLFTAPQIGQLRTVVWKEINICLQRLRNN 116
Query: 139 HWFEMQSLSLHPAPWYSD-VLHCSLGIDSKHYS----TMCRTYSEERPDTFVGHHNTYGM 193
W +D V+ + I K + +T + +P G H + M
Sbjct: 117 ----------KALGWLADYVVVLAEKIYIKGFKDTWFVFAKTAPKHQPTNIAGQHGDHYM 166
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL----DDWK 249
+ DEA G D + +G LT N NR ++TS P + +G FY+ +K W
Sbjct: 167 -VWADEACGIDDAVMEVAIGALTHEN-NRA-VLTSQPAKNTGFFYDTHHKLSHHNGGKWT 223
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
+ + + + +YG +S + + G+FP+ ++ E + +
Sbjct: 224 ALEFNGEMSPIVSKDKLIEALYQYGSRNSPGYLIRIRGKFPELK-GEYLLTRTDYENMKQ 282
Query: 309 EPC----PDPYAPLIMGCDIAEEGGDNTVVV--------LRRGPVIEH-------LFDWS 349
+PC D + +I+ D+ + G ++ V+ + +G + H LF +
Sbjct: 283 QPCVIEEGDKWG-IIVAVDVGGDVGRDSSVISVMQVVDKMIKGRIERHVHLLDIPLFS-N 340
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ ++ T KI+ ++ Y ++ID G L+ G + V +
Sbjct: 341 RANINTLKAKINDVMSDYPGATLVIDPLGAGMGLTQSLKADGVYFDEVHWGSPCFNNTLK 400
Query: 410 R---NRRTELHVKMADWLE---FASLINHSGLIQNLKSLKS------FIVPNTGELAIES 457
R N+R+ +V MA +E F+ + Q + +L+ + + S
Sbjct: 401 RYYMNKRSHAYVSMAKAVEKGYFSVSDKVKKMYQVMTNLEEQMTRLPYYFDEKARWCMMS 460
Query: 458 KR---VKGAKSTDYSDGLMYTFAEN 479
K+ KG KS D +D + + F EN
Sbjct: 461 KKDMLKKGIKSPDIADTIAFGFMEN 485
>gi|226227228|ref|YP_002761334.1| hypothetical protein GAU_1822 [Gemmatimonas aurantiaca T-27]
gi|226090419|dbj|BAH38864.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 549
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 107/462 (23%), Positives = 179/462 (38%), Gaps = 67/462 (14%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK-WLSLLPNKH 139
A+++G G GKT L A L+LW ++ P +A Q + +W EV++ W
Sbjct: 71 AVASGTGTGKTFLEAVLLLWWIAVEPDSIATTVATKADQQEKGIWREVARHWPRFQACFP 130
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E+ +L + PW D + GI T EE G H + I+ DE
Sbjct: 131 EAELTTLRIRMEPWRGDAWG-AWGI------TAAPKAGEESSSAVQGLHAKR-LLILVDE 182
Query: 200 ASGTPDVINLGILGFLT-ERNANRFWIMTSNPRRLS---GKFYEIFNKPLDDWKRFQID- 254
G P + ++ T E N + NP + G+F E K + + +D
Sbjct: 183 TPGVPQPVMTALVNTATGEENVIAAF---GNPDYQADPLGQFAE--TKRVTAIRISALDH 237
Query: 255 ---TRTVEGIDPSFHEGIIA----RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
VE I + IA +YG++S V + V G P+Q + I L A +
Sbjct: 238 PNVVLGVERIPGAATRLSIATREDKYGVESGVYQSRVRGIAPEQSASALIHLAWCVAAAD 297
Query: 308 REPCPDPYA----PLIMGCDIAE-EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
R A P +G D+A+ E GD V + +G + + + + ++
Sbjct: 298 RAESVQHAALALGPKALGVDVAQSENGDKAAVAMGQGARLLSVIAKACPNATKLGAEVWQ 357
Query: 363 LV--EKYRPDAIIIDANNTGARTCDYL------EMLGYHVYRVLGQKRAVD--------- 405
L+ E P+ + +D GA T ++L E G V R G +A++
Sbjct: 358 LMRDEGIVPEYVGVDPIGVGAATVNHLDGECEKENAGRSVVRCSGGAKAMEASSRAADGS 417
Query: 406 -LEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNT-------GELAIES 457
+E+ + +++ W + + + GLI + + F T G + +ES
Sbjct: 418 AMEWLADANKFKNLRAQMWWQLREDLRN-GLIALPRDRELFRELTTVQFDEDGGIVTLES 476
Query: 458 K---RVKGAKSTDYSDGLMY-------TFAENPPRSDMDFGR 489
K R + +S D +D ++Y T PP D R
Sbjct: 477 KDDIRKRLGRSPDRADAVVYWNWVRPRTRVNQPPPEGFDVAR 518
>gi|299769795|ref|YP_003731821.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
gi|298699883|gb|ADI90448.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
Length = 668
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 101/432 (23%), Positives = 163/432 (37%), Gaps = 61/432 (14%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT + LW + ++ A QLK +W E+S + L
Sbjct: 211 GKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLARLKQ 259
Query: 149 HPAPWYSD-VLHCSLGIDSKHYS----TMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
P W +D V + S + K Y +T + +P G+H M + DEASG
Sbjct: 260 GPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGV 318
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK----PLDDWKRFQIDTRTVE 259
D + G LT + NR +MTS P R +G FYE +K W +
Sbjct: 319 DDAVLDVAFGALTHED-NRA-VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESP 376
Query: 260 GIDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-P 317
+ E +YG D ++ V G+FP + I EE D +
Sbjct: 377 LVSKQSLEEQRQKYGSRDDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFG 436
Query: 318 LIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGL 363
I+ D+ G D++V+V+ RR V++ ++ D+ KI+ L
Sbjct: 437 YIITVDVGGGVGRDDSVIVISKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKINEL 496
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA-D 422
+ +Y +++D N G YL+ G V + F + R E K +
Sbjct: 497 LLQYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQC----FSNDNRKEFTNKRSLA 552
Query: 423 WLEFASLINHSGLIQNLKSLKSFI--------VPNTGE-------LAIESKRVKGAKSTD 467
++ FA + SG + +K+ K ++ +P + L+ + R G KS D
Sbjct: 553 YVGFARAVA-SGRFK-MKTKKHYVKIKDQLIHIPYRFDDFARYKILSKDEMRRMGIKSPD 610
Query: 468 YSDGLMYTFAEN 479
D + F EN
Sbjct: 611 LGDAFAFLFLEN 622
>gi|323516996|gb|ADX91377.1| hypothetical protein ABTW07_0941 [Acinetobacter baumannii
TCDC-AB0715]
gi|323518424|gb|ADX92805.1| hypothetical protein ABTW07_2381 [Acinetobacter baumannii
TCDC-AB0715]
Length = 663
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 125/328 (38%), Gaps = 39/328 (11%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT + LW + ++ A QLK +W E+S + L
Sbjct: 211 GKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLARLKQ 259
Query: 149 HPAPWYSD-VLHCSLGIDSKHYS----TMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
P W +D V + S + K Y +T + +P G+H M + DEASG
Sbjct: 260 GPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGV 318
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK----PLDDWKRFQIDTRTVE 259
D + G LT + NR +MTS P R +G FYE +K W +
Sbjct: 319 DDAVLDVAFGALTHED-NRA-VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESP 376
Query: 260 GIDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-P 317
+ E +YG D ++ V G+FP + I EE D +
Sbjct: 377 LVSKQSLEEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFG 436
Query: 318 LIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGL 363
++ D+ G D++V+V+ RR V++ ++ D+ KI+ L
Sbjct: 437 YVITVDVGGGVGRDDSVIVVSKVWGESQWGERARRVEVVDIPLCKNRDDILELFAKINEL 496
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLG 391
+ +Y +++D N G YL+ G
Sbjct: 497 LLQYPNANLVVDDNGAGKGLGQYLKKQG 524
>gi|256392042|ref|YP_003113606.1| hypothetical protein Caci_2856 [Catenulispora acidiphila DSM 44928]
gi|256358268|gb|ACU71765.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928]
Length = 484
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 93/443 (20%), Positives = 161/443 (36%), Gaps = 77/443 (17%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRP--GISVICLANSETQLKTTLWAEVSKWLSL---- 134
A+ + G GK+ + + L W + T P V+ A + Q+K LWAE++K +
Sbjct: 58 AVQSCHGTGKSFVASRLTAWWLDTHPPGEAFVVTTAPTGDQVKAILWAEINKAFAKAEAR 117
Query: 135 ---LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
LP + ++ W D + G R S+ P F G H Y
Sbjct: 118 GTPLPGR---------INETDWKYDKFLVAFG----------RKPSDYNPHAFQGIHAKY 158
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+ I+ DEA G L T + I NP F ++ D W
Sbjct: 159 VLVIL-DEACGISKQFWTAALAIATGVHCRILAI--GNPDDPGSHFAQVCKS--DRWNMI 213
Query: 252 QIDTR-----TVEGIDPSFHEGIIAR---------YGLDSDVTRVEVCGQFPQQDIDSFI 297
+I R T E + + ++++ +G +S + +V +FP D +
Sbjct: 214 KIAARDTPNFTGEEVPDDLADMLVSQAYVLDMAEEFGPESPIYLSKVDAEFPSDASDGVV 273
Query: 298 PLNIIEEALNREP----CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
L+ + A REP PD P+ +G D+ GGD T + RRG + + D
Sbjct: 274 RLSKL-MACTREPVHPYAPDRLVPVELGVDLG-AGGDETCIRERRGIAAGREWRNREKDS 331
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM---LGYHVYRVLGQKRAVDLEFCR 410
+ I + + + +D+ G L+ G H V+G + E
Sbjct: 332 EKVVDHIVRAIRETGATKVKVDSIGIGWGIVGSLQARRKQGLHTAEVVGVNVS---EAST 388
Query: 411 NRRTELHVKMADWLEFASLINHSG--------------LIQNLKSLKSFIVPNTGELAIE 456
++ W E ++ G L+ L + K + + +G + +E
Sbjct: 389 QPEKYARLRSQIWWEVGRKLSEDGGWDLSQLDTTDRDRLVSQLTAPK-YDLDASGRIVVE 447
Query: 457 SK---RVKGAKSTDYSDGLMYTF 476
K + + +S D +D L+ F
Sbjct: 448 KKEETKKRIGRSPDNADALLLAF 470
>gi|312964323|ref|ZP_07778627.1| terminase B protein [Escherichia coli 2362-75]
gi|331655801|ref|ZP_08356790.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M718]
gi|312291036|gb|EFR18910.1| terminase B protein [Escherichia coli 2362-75]
gi|323186470|gb|EFZ71817.1| terminase B protein [Escherichia coli 1357]
gi|323969205|gb|EGB64507.1| terminase B protein [Escherichia coli TA007]
gi|325495624|gb|EGC93488.1| DNA pacase B subunit [Escherichia fergusonii ECD227]
gi|331046575|gb|EGI18664.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M718]
Length = 494
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 139/340 (40%), Gaps = 32/340 (9%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS-KWLSLLPN 137
K ++S+G G GK+ + + +++ + PG I +AN Q+ T ++ + W +
Sbjct: 51 KTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSR 110
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
W L +Y + K + R SEE G H + + II
Sbjct: 111 FPWLA-DYFVLTETAFYEVTGKGVWTVVPKGF----RLGSEE---ALAGEHADHLLYII- 161
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKR 250
DEASG D I G LT ++ NR ++ S P R SG FY+ +K P +
Sbjct: 162 DEASGVSDRAFGIITGALTGQD-NRI-LLLSQPTRPSGYFYDTHHKLAKRPGNPDGVYTA 219
Query: 251 FQIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+++ + P+F + +A Y G D+ + ++V G FP+ + + +E A R+
Sbjct: 220 ITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRK 279
Query: 310 PCPDPYAPLIMGCDIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKI 360
+ D+A G D +V+ + +R + + +++ KI
Sbjct: 280 VKIAKGWGWLACVDVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKI 339
Query: 361 SGLV--EKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRV 397
E++ I ID + G T D + E G V R+
Sbjct: 340 FAECNPERFPNITIAIDGDGLGKATADLMYEYYGITVQRI 379
>gi|332974843|gb|EGK11758.1| hypothetical protein HMPREF9373_1714 [Psychrobacter sp. 1501(2011)]
Length = 520
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 96/466 (20%), Positives = 183/466 (39%), Gaps = 67/466 (14%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ ++++G G GK+ + LW + P ++ A QL+T +W E++ L L N
Sbjct: 57 RTSVASGHGTGKSRSAGIIALWHLLFYPESVMLFTAPQIGQLRTVVWKEINICLQRLRNN 116
Query: 139 HWFEMQSLSLHPAPWYSD-VLHCSLGIDSKHYS----TMCRTYSEERPDTFVGHHNTYGM 193
W +D V+ + I K + +T + +P G H + M
Sbjct: 117 ----------KALGWLADYVVVLAEKIYIKGFKDTWFVFAKTAPKHQPTNIAGQHGDHYM 166
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL----DDWK 249
+ DEA G D + +G LT N NR ++TS P + +G FY+ +K W
Sbjct: 167 -VWADEACGIDDAVMEVAIGALTHEN-NRA-VLTSQPAKNTGFFYDTHHKLSHYNGGKWI 223
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
+ + + + +YG +S + + G+FP+ ++ E +
Sbjct: 224 ALEFNGEMSPIVSKEKLIEALYQYGSRNSPGYLIRIRGKFPELK-GEYLLTRTDYENMKA 282
Query: 309 EPC----PDPYAPLIMGCDIAEEGGDNTVVV--------LRRGPVIEH-------LFDWS 349
PC D + +I+ D+ + G ++ V+ + +G + H LF +
Sbjct: 283 HPCVIKEGDKWG-IIVTVDVGGDVGRDSSVISVLQVVDKMVKGRIERHVHLLDIPLFS-N 340
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ ++ T KI+ ++ Y ++ID G ++ G + V +
Sbjct: 341 RANINTLKAKINDVMSDYPGATLVIDPLGAGMGLTQSVKADGVYFDEVHWGSPCFNNTLK 400
Query: 410 R---NRRTELHVKMADWLE---FASLINHSGLIQNLKSLKS------FIVPNTGELAIES 457
R N+R+ +V MA +E F+ + Q + +L+ + + S
Sbjct: 401 RYYMNKRSHAYVSMAKAVEKGYFSVSDKIKKMYQVITNLEEQMTRLPYYFDEKARWCMMS 460
Query: 458 KR---VKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEGVDL 500
K+ KG KS D +D + + F EN P+ YE +++
Sbjct: 461 KKDMLKKGIKSPDIADTIAFGFMEN-------ISYAPAESYEDLNI 499
>gi|260871239|ref|YP_003238019.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
gi|257767818|dbj|BAI39311.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
Length = 494
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 140/338 (41%), Gaps = 32/338 (9%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV-SKWLSLLPNKH 139
++++G G GK+ + + + + + PG VI +AN Q+ ++ + S W + +
Sbjct: 53 SVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFP 112
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
W + L ++ I K CR+ +EE G H + + II DE
Sbjct: 113 WLS-KYFILTETSFFEVTGKGVWTILIKS----CRSGNEE---ALAGEHADHLLYII-DE 163
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQ 252
ASG D I G LT ++ NR ++ S P R SG FY+ ++ P +
Sbjct: 164 ASGVSDKAFSVITGALTGKD-NRI-LLLSQPTRPSGYFYDSHHRLAIRPGNPDGLFTAII 221
Query: 253 IDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+++ +D F +A Y G D+ + ++V G+FP+ + + +E A R+
Sbjct: 222 LNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVK 281
Query: 312 PDPYAPLIMGCDIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISG 362
+ D+A G D +V+ + +R + + +++ KI
Sbjct: 282 IAKGWGWVACVDVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKIFA 341
Query: 363 LV--EKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRV 397
E++ I ID + G T D + E G V R+
Sbjct: 342 ECNPERFPNITIAIDGDGLGKSTADLMYERYGITVQRI 379
>gi|56266643|gb|AAV84926.1| DNA pacase B subunit [Enterobacteria phage phiW39]
Length = 494
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 139/340 (40%), Gaps = 32/340 (9%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS-KWLSLLPN 137
K ++S+G G GK+ + + +++ + PG I +AN Q+ T ++ + W +
Sbjct: 51 KTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSR 110
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
W L +Y + K + R SEE G H + + II
Sbjct: 111 FPWLA-DYFVLTETAFYEITGKGVWTVVPKGF----RLGSEE---ALAGEHADHLLYII- 161
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKR 250
DEASG D I G LT ++ NR ++ S P R SG FY+ +K P +
Sbjct: 162 DEASGVSDRAFGIITGALTGQD-NRI-LLLSQPTRPSGYFYDTHHKLAKRPGNPDGVYTA 219
Query: 251 FQIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+++ + P+F + +A Y G D+ + ++V G FP+ + + +E A R+
Sbjct: 220 ITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRK 279
Query: 310 PCPDPYAPLIMGCDIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKI 360
+ D+A G D +V+ + +R + + +++ KI
Sbjct: 280 VKIAKGWGWLACVDVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKI 339
Query: 361 SGLV--EKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRV 397
E++ I ID + G T D + E G V R+
Sbjct: 340 FAECNPERFPNITIAIDGDGLGKATADLMYEYYGITVQRI 379
>gi|324111095|gb|EGC05081.1| terminase B protein [Escherichia fergusonii B253]
Length = 494
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 139/340 (40%), Gaps = 32/340 (9%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS-KWLSLLPN 137
K ++S+G G GK+ + + +++ + PG I +AN Q+ T ++ + W +
Sbjct: 51 KTSVSSGHGTGKSDMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSR 110
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
W L +Y + K + R SEE G H + + II
Sbjct: 111 FPWLA-DYFVLTETAFYEVTGKGVWTVVPKGF----RLGSEE---ALAGEHADHLLYII- 161
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKR 250
DEASG D I G LT ++ NR ++ S P R SG FY+ +K P +
Sbjct: 162 DEASGVSDRAFGIITGALTGQD-NRI-LLLSQPTRPSGYFYDTHHKLAKRPGNPDGVYTA 219
Query: 251 FQIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+++ + P+F + +A Y G D+ + ++V G FP+ + + +E A R+
Sbjct: 220 ITLNSEESPLVTPAFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRK 279
Query: 310 PCPDPYAPLIMGCDIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKI 360
+ D+A G D +V+ + +R + + +++ KI
Sbjct: 280 VKIAKGWGWLACVDVAGGTGRDKSVINIMMVSGQRNKRRVINYRILEYTDVTETQLAAKI 339
Query: 361 SGLV--EKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRV 397
E++ I ID + G T D + E G V R+
Sbjct: 340 FAECNPERFPNITIAIDGDGLGKATADLMYEYYGITVQRI 379
>gi|213156231|ref|YP_002318651.1| phage terminase [Acinetobacter baumannii AB0057]
gi|301346399|ref|ZP_07227140.1| phage terminase [Acinetobacter baumannii AB056]
gi|301594275|ref|ZP_07239283.1| phage terminase [Acinetobacter baumannii AB059]
gi|213055391|gb|ACJ40293.1| phage terminase [Acinetobacter baumannii AB0057]
Length = 663
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 125/328 (38%), Gaps = 39/328 (11%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT + LW + ++ A QLK +W E+S + L
Sbjct: 211 GKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLARLKQ 259
Query: 149 HPAPWYSD-VLHCSLGIDSKHYS----TMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
P W +D V + S + K Y +T + +P G+H M + DEASG
Sbjct: 260 GPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGV 318
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK----PLDDWKRFQIDTRTVE 259
D + G LT + NR +MTS P R +G FYE +K W +
Sbjct: 319 DDAVLDVAFGALTHED-NRA-VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESP 376
Query: 260 GIDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-P 317
+ + +YG D ++ V G+FP + I EE D +
Sbjct: 377 LVSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFG 436
Query: 318 LIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGL 363
++ D+ G D++V+V+ RR V++ ++ D+ KI+ L
Sbjct: 437 YVITVDVGGGVGRDDSVIVVSKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKINEL 496
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLG 391
+ +Y +++D N G YL+ G
Sbjct: 497 LLQYPNANLVVDDNGAGKGLGQYLKKQG 524
>gi|260551382|ref|ZP_05825582.1| phage terminase [Acinetobacter sp. RUH2624]
gi|260405545|gb|EEW99037.1| phage terminase [Acinetobacter sp. RUH2624]
Length = 663
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 125/328 (38%), Gaps = 39/328 (11%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT + LW + ++ A QLK +W E+S + L
Sbjct: 211 GKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLARLKQ 259
Query: 149 HPAPWYSD-VLHCSLGIDSKHYS----TMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
P W +D V + S + K Y +T + +P G+H M + DEASG
Sbjct: 260 GPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGV 318
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK----PLDDWKRFQIDTRTVE 259
D + G LT + NR +MTS P R +G FYE +K W +
Sbjct: 319 DDAVLDVAFGALTHED-NRA-VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESP 376
Query: 260 GIDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-P 317
+ + +YG D ++ V G+FP + I EE D +
Sbjct: 377 LVSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFG 436
Query: 318 LIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGL 363
++ D+ G D++V+V+ RR V++ ++ D+ KI+ L
Sbjct: 437 YVITVDVGGGVGRDDSVIVVSKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKINEL 496
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLG 391
+ +Y +++D N G YL+ G
Sbjct: 497 LLQYPNANLVVDDNGAGKGLGQYLKKQG 524
>gi|332852816|ref|ZP_08434408.1| intein splicing region-containing protein [Acinetobacter baumannii
6013150]
gi|332871045|ref|ZP_08439658.1| intein splicing region-containing protein [Acinetobacter baumannii
6013113]
gi|332729027|gb|EGJ60377.1| intein splicing region-containing protein [Acinetobacter baumannii
6013150]
gi|332731805|gb|EGJ63085.1| intein splicing region-containing protein [Acinetobacter baumannii
6013113]
Length = 663
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 125/328 (38%), Gaps = 39/328 (11%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT + LW + ++ A QLK +W E+S + L
Sbjct: 211 GKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLARLKQ 259
Query: 149 HPAPWYSD-VLHCSLGIDSKHYS----TMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
P W +D V + S + K Y +T + +P G+H M + DEASG
Sbjct: 260 GPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGV 318
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK----PLDDWKRFQIDTRTVE 259
D + G LT + NR +MTS P R +G FYE +K W +
Sbjct: 319 DDAVLDVAFGALTHED-NRA-VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESP 376
Query: 260 GIDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-P 317
+ + +YG D ++ V G+FP + I EE D +
Sbjct: 377 LVSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFG 436
Query: 318 LIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGL 363
++ D+ G D++V+V+ RR V++ ++ D+ KI+ L
Sbjct: 437 YVITVDVGGGVGRDDSVIVVSKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKINEL 496
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLG 391
+ +Y +++D N G YL+ G
Sbjct: 497 LLQYPNANLVVDDNGAGKGLGQYLKKQG 524
>gi|226940437|ref|YP_002795511.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715364|gb|ACO74502.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 133
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL------HPAPWYSDVLHCSLGIDSK 167
AN++TQL+T EV KW L HWF+ QS S+ H W +D +
Sbjct: 4 ANTDTQLRTKTSPEVGKWQRLSITSHWFDPQSASIAARDKEHAKTWRADFV--------- 54
Query: 168 HYSTMCRTYSEERPDTFVGHHNT-YGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+SE + F G HN + +I DEAS D + G LT+ WI
Sbjct: 55 -------PWSEHNTEAFAGLHNKGKRIVLIFDEASAIADKVWEVAEGALTDEETEIIWIA 107
Query: 227 TSNPRR 232
NP R
Sbjct: 108 FGNPTR 113
>gi|184158505|ref|YP_001846844.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
gi|183210099|gb|ACC57497.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
Length = 663
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 125/328 (38%), Gaps = 39/328 (11%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT + LW + ++ A QLK +W E+S + L
Sbjct: 211 GKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLARLKQ 259
Query: 149 HPAPWYSD-VLHCSLGIDSKHYS----TMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
P W +D V + S + K Y +T + +P G+H M + DEASG
Sbjct: 260 GPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGV 318
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK----PLDDWKRFQIDTRTVE 259
D + G LT + NR +MTS P R +G FYE +K W +
Sbjct: 319 DDAVLDVAFGALTHED-NRA-VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESP 376
Query: 260 GIDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-P 317
+ + +YG D ++ V G+FP + I EE D +
Sbjct: 377 LVSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFG 436
Query: 318 LIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGL 363
++ D+ G D++V+V+ RR V++ ++ D+ KI+ L
Sbjct: 437 YVITVDVGGGVGRDDSVIVVSKVWGESQWGERARRVEVVDIPLCKNRDDILELFAKINEL 496
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLG 391
+ +Y +++D N G YL+ G
Sbjct: 497 LLQYPNANLVVDDNGAGKGLGQYLKKQG 524
>gi|46401730|ref|YP_006576.1| PacB [Enterobacteria phage P1]
gi|301646767|ref|ZP_07246623.1| putative terminase B protein [Escherichia coli MS 146-1]
gi|129547|sp|P27753|TERL_BPP1 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein B; AltName: Full=PACase B protein; AltName:
Full=Terminase B protein; AltName: Full=Terminase large
subunit
gi|68597607|sp|Q5XLR0|TERL_BPP7 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein B; AltName: Full=PACase B protein; AltName:
Full=Terminase B protein; AltName: Full=Terminase large
subunit
gi|33323612|gb|AAQ07582.1|AF503408_106 PacB [Enterobacteria phage P7]
gi|215636|gb|AAA21724.1| pacB [Enterobacteria phage P1]
gi|33338757|gb|AAQ14080.1| PacB [Enterobacteria phage P1]
gi|33338866|gb|AAQ14188.1| PacB [Enterobacteria phage P1]
gi|54112354|gb|AAV28854.1| PacB [Enterobacteria phage P7]
gi|301075042|gb|EFK89848.1| putative terminase B protein [Escherichia coli MS 146-1]
Length = 494
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 141/343 (41%), Gaps = 32/343 (9%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV-SKWLSLLPNKH 139
++++G G GK+ + + + + + PG VI +AN Q+ ++ + S W + +
Sbjct: 53 SVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFP 112
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
W + L ++ I K CR +EE G H + + II DE
Sbjct: 113 WLS-KYFILTETSFFEVTGKGVWTILIKS----CRPGNEE---ALAGEHADHLLYII-DE 163
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQ 252
ASG D I G LT ++ NR ++ S P R SG FY+ ++ P +
Sbjct: 164 ASGVSDKAFSVITGALTGKD-NRI-LLLSQPTRPSGYFYDSHHRLAIRPGNPDGLFTAII 221
Query: 253 IDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+++ +D F +A Y G D+ + ++V G+FP+ + + +E A R+
Sbjct: 222 LNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVK 281
Query: 312 PDPYAPLIMGCDIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISG 362
+ D+A G D +V+ + +R + + +++ KI
Sbjct: 282 IAKGWGWVACVDVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKIFA 341
Query: 363 LV--EKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQKR 402
E++ I ID + G T D + E G V R+ K+
Sbjct: 342 ECNPERFPNITIAIDGDGLGKSTADLMYERYGITVQRIRWGKK 384
>gi|225155389|ref|ZP_03723881.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
gi|224803845|gb|EEG22076.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
Length = 479
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 13/227 (5%)
Query: 176 YSEERPDTFVGHHNTYG--MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
++ +R F G H G + II DEA D I + +R + S+ L
Sbjct: 129 FATDRGGRFEGFHAYPGRPLLIILDEAKSIADDIFVA-----ADRCQPTMLLYISSWGGL 183
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
G+F++ F++ D + +FQ I P F E + A+YG DSD+ R + GQ P+ +
Sbjct: 184 FGRFHDAFSQ--DRFAQFQAGIADCPHITPEFIEAMRAQYGEDSDIYRSMILGQRPKGNE 241
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW-SKTD 352
F+ + E P + CD AE D V+ R G + + W +
Sbjct: 242 TGFVVPFVDYERCESNPPVWQEGTKQVFCDFAET-SDECVIAKRDGNRLSIVDAWIPDGN 300
Query: 353 LRTTNNKISGLVEKYRPDAIII--DANNTGARTCDYLEMLGYHVYRV 397
++ G + + + + +I DA+ TG L + G + V
Sbjct: 301 TAGITDRFEGHLRRLQNEGFVIRGDADGTGHGYITALSLRGIKISGV 347
>gi|331649955|ref|ZP_08351031.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M605]
gi|331041212|gb|EGI13366.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M605]
Length = 494
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 139/338 (41%), Gaps = 32/338 (9%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV-SKWLSLLPNKH 139
++++G G GK+ + + + + + PG VI +AN Q+ ++ + S W + +
Sbjct: 53 SVTSGHGTGKSDMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFP 112
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
W + L ++ I K CR +EE G H + + II DE
Sbjct: 113 WLS-KYFILTETSFFEVTGKGVWTILIKS----CRPGNEE---ALAGEHADHLLYII-DE 163
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQ 252
ASG D I G LT ++ NR ++ S P R SG FY+ ++ P +
Sbjct: 164 ASGVSDKAFSVITGALTGKD-NRI-LLLSQPTRPSGYFYDSHHRLAIRPGNPDGLFTAII 221
Query: 253 IDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+++ +D F +A Y G D+ + ++V G+FP+ + + +E A R+
Sbjct: 222 LNSEESPLVDAKFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVK 281
Query: 312 PDPYAPLIMGCDIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISG 362
+ D+A G D +V+ + +R + + +++ KI
Sbjct: 282 IAKGWGWVACVDVAGGTGRDKSVINIMMVSGQRNKRRVINYRMQEYTDVTETQLAAKIFA 341
Query: 363 LV--EKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRV 397
E++ I ID + G T D + E G V R+
Sbjct: 342 ECNPERFPNITIAIDGDGLGKSTADLMYERYGITVQRI 379
>gi|261381054|ref|ZP_05985627.1| phage terminase, large subunit, PBSX family [Neisseria subflava
NJ9703]
gi|284796087|gb|EFC51434.1| phage terminase, large subunit, PBSX family [Neisseria subflava
NJ9703]
Length = 450
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 89/194 (45%), Gaps = 35/194 (18%)
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
I+G D+A+EG D + +LR G V+ + +W D+ + +K+ ++ + D I+ D+
Sbjct: 241 ILGFDVADEGDDASATILRHGSVVIDMDEWRGQDVIYSADKVYLYGQEAKADKIVYDSIG 300
Query: 379 TGA-------RTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW-------- 423
GA R ++ +G++ + + A + +N+ ++K W
Sbjct: 301 VGAGVKAQFRRKTGKVQTIGFNAGGSVFKPEARYTDDKKNKDMFSNIKAQAWWMVRERFY 360
Query: 424 -----LEFA------SLINHSGLIQNLKSLKSFI------VPNTGELAIESKR---VKGA 463
+EF LI+ SG +++L+ LK+ + N G + +ESK+ +G
Sbjct: 361 KTWRAIEFGDTYPIDELISISGSLKDLEYLKAELSRPRVDYDNNGRVKVESKKDMAKRGI 420
Query: 464 KSTDYSDGLMYTFA 477
S + +D L+ FA
Sbjct: 421 PSPNRADALIMAFA 434
>gi|320103661|ref|YP_004179252.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
gi|319750943|gb|ADV62703.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
Length = 553
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 128/349 (36%), Gaps = 39/349 (11%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
++ G +GK+ L A L LW + T PG V+ A S+ L T L+ E+ K L+ +
Sbjct: 68 VATGNAVGKSYLAAGLTLWWLYTHPGSLVVATAPSQGLLGTVLFRELQKALA-ASRRRGL 126
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + + L G C + + G H+ M ++ DEAS
Sbjct: 127 GLPGMVVGSDRGTPFSLRVGPGRRLAAEGWGCLGIATRGVERLAGRHHADLMVVV-DEAS 185
Query: 202 GT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID------ 254
G P+ LT N + ++ NP F+++ + L + I
Sbjct: 186 GVQPEAWE-----ALTSLNPRKLFV-CGNPLTPGTVFHKLHQRGLTEASDPSIPDHARGV 239
Query: 255 --------------TRTVEGI-DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
R+ G+ D F ++G S + V G FP + + I
Sbjct: 240 ALTIPSTASPDINLERSPRGLADRGFIREAERQWGRGSPLWLSHVEGVFPTVAVHALIEP 299
Query: 300 NIIEEALNREPCP---DPYAPLIMGCDIAEE-GGDNTVVVLRRGPVIEHLFDWSKTDLRT 355
+++A + E +P ++GCD+A G D T +V+R I L +
Sbjct: 300 GWLDQAASLERSQTYENPPGQPVLGCDLAAGVGADRTAIVVRDEGGIRELIASDRLAPDE 359
Query: 356 TNNKISGLVEKY--RPDAIIIDANNTGARTCDYLEMLG---YHVYRVLG 399
I+ L K+ P+ I+ D GA L G H + G
Sbjct: 360 AATLIASLARKHLIAPERILYDGAGLGAELTTRLARQGPGFVHARAIFG 408
>gi|298387330|ref|ZP_06996883.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|298259999|gb|EFI02870.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length = 500
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 25/222 (11%)
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP---LIMGCDIAEEGGDNTV 333
+D+ R++V G FP+ D IP IE A R PY P +G D+A G DN+V
Sbjct: 264 NDLFRIKVRGMFPKVAEDVLIPYEWIEIANKRWQENHPYRPRKSCKLGVDVAGMGRDNSV 323
Query: 334 VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR---PDAIIIDANNTGARTCDYLEML 390
R G + FD ++ + ++ + G Y+ D I ID GA L
Sbjct: 324 FCPRYGNYVSQ-FDVFQSAGKASHMHVVGKALSYKRTDRDIIFIDTIGEGAGVYSRLVEQ 382
Query: 391 G----YHVYRVLGQKRAVDL--EFC-RNRRTELHVKMADWLE----FASLINHSGLIQNL 439
G + V G K D+ E+ N R L+ + DWL+ F ++
Sbjct: 383 GIRNIFSVKNSQGAKGLHDITGEYSFANMRAYLYWALRDWLDPKNNFFPMLPPCDQFTEE 442
Query: 440 KSLKSFIVPNTGELAIE-----SKRVKGAKSTDYSDGLMYTF 476
+ + + G++ IE KR+K +S DY D L TF
Sbjct: 443 ATETKWKFRSDGKILIEPKEEIKKRIK--RSPDYMDALSETF 482
>gi|186682890|ref|YP_001866086.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
gi|186465342|gb|ACC81143.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
Length = 543
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 143/374 (38%), Gaps = 85/374 (22%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ A G GK+ + + LV++ + G++ I A SE Q+K LWAE+ K L K
Sbjct: 64 VKAAHGTGKSFIASLLVIYFLFCVGGVA-ITTAPSEDQVKWILWAELRKIHGLHKTKLGG 122
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ L +S+ ++ + GI S+ YS ++F G H + +I DEA
Sbjct: 123 RCDIMQL----LFSETVY-AFGITSRDYSE----------NSFQGQHRQKQL-LIEDEAD 166
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI------------FNKPLDDWK 249
G I+ G + LT ++ + NP +F + F+ P W
Sbjct: 167 GITPQIDNGFIACLT--GSDNRGLRIGNPVDPQSQFAKTCKLDKRCLTVSAFSHPNVSWA 224
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYG--------------------LDSD-VTRV------ 282
+++ V + P E II G + D + RV
Sbjct: 225 -YELCADGVYRLKPEVAEHIINEDGEIKPQQEWPPEFPRDRIPGAISIDWIERVRREKFE 283
Query: 283 -------EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY-------APLIMGCDIAEEG 328
V G++ + D I L ++++A + Y P +G D+ +G
Sbjct: 284 TSAYWKGRVMGEYAEDAADGIILLTLLKQARSLYDQNPQYWDAIAKRYPWRLGLDVG-DG 342
Query: 329 GDNTVVVLRRGPVI-EHLFDWSKTDLRTTN-------NKISGLVEKYRPDAIIIDANNTG 380
GD + L RGPV+ E +K DL T ++I L Y +I +D G
Sbjct: 343 GDPHALALLRGPVLYEVQIHPTKGDLLDTERAADIAASQIKLLGTGY---SIAVDNTGVG 399
Query: 381 ARTCDYLEMLGYHV 394
A T L+ GY
Sbjct: 400 AGTLAKLKKTGYQA 413
>gi|320091491|gb|ADW08983.1| terminase-like protein [Clavibacter phage CN77]
Length = 414
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 47/236 (19%)
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP--LDDWKRFQI-- 253
DEA G P + G +T +++ + NP +F+ IF P +D+W F I
Sbjct: 51 DEAGGVPPELFTGAEAVMTGQDSK--IVAIGNPDSRGTEFHRIFTVPALMDEWNTFTISA 108
Query: 254 -DTRTVEG--------------------IDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQ 291
D TV G +D H+ + + G D +V G+FP +
Sbjct: 109 YDLPTVTGEVVYPDHPEKQERMLKGLTSLDWIQHKERVWKVGGKPDGRFLAKVLGEFPGE 168
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD---- 347
++F P I+ N P +IMG D+A G D++VV +G + LF
Sbjct: 169 TDNAFFPQEAIDRG-NDTTIDKPEKGIIMGVDLARMGDDDSVVYTNQGGRV-RLFKGQVR 226
Query: 348 -------------WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
WSK + + ++ + + + +D++ G D LE L
Sbjct: 227 YSDREGTKTTTGVWSKENTVASARRVHAIAMQIGAKQVRLDSSGIGGAVFDELEQL 282
>gi|134287454|ref|YP_001109621.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
gi|134131876|gb|ABO60570.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
Length = 509
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 147/363 (40%), Gaps = 54/363 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
H + ++ + + + ++S+G G GKT+ A + LW + + I A + + +
Sbjct: 40 HQIQMFDSVSKQGSRTSVSSGHGTGKTSGFAIIALWHLLCYYLSNTILTAPKISTVSDGV 99
Query: 125 WAEVSKWLSLLPNK------HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
W E + + + N +F ++S ++ + ++ + ++
Sbjct: 100 WKEFADLSTKISNGPQSWIWEYFVIESERVYVRGY------------KLNWFVIAKSAPR 147
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL-GFLTERNANRFWIMTSNPRRLSGKF 237
P+ G H + + + DEASG PD N G++ G LT+ NR + S P R SG F
Sbjct: 148 GSPENLAGAHRDW-LLWLADEASGIPD-DNFGVITGSLTDER-NRM-CLASQPTRSSGFF 203
Query: 238 YEIFN----KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD--SDVTRVEVCGQFPQQ 291
YE + W ++ P IA L + +++V G+FP+
Sbjct: 204 YETHHALSRAEGGPWNNLVFNSE----FSPIVSAKFIAEKKLQYTEEEYQIKVQGRFPEN 259
Query: 292 DIDSFIPLNIIEEALNREPC-PDPYAPLIMGCDIAEEG-GDNTVV----VLRRGPVIEHL 345
+ IE + R PD + ++ D+ G D TV+ V+ RG E+
Sbjct: 260 SSKYLVGPQAIEACVGRTVIKPDEHWGWLLPVDVGGGGWRDETVMPALHVIGRG---EYG 316
Query: 346 FDWSKTDLRTT--------NNKISGLV---EKYRPDAI-IIDANNTGARTCDYLEMLGYH 393
D + L + ++ G++ + R +A +IDA G C L++ G+
Sbjct: 317 MDARRAQLISVPLHSNTQDPAQLHGVIVHAARERSNATAMIDAGGMGLIVCKQLDLDGFS 376
Query: 394 VYR 396
YR
Sbjct: 377 QYR 379
>gi|284162607|ref|YP_003401230.1| hypothetical protein Arcpr_1511 [Archaeoglobus profundus DSM 5631]
gi|284012604|gb|ADB58557.1| protein of unknown function DUF264 [Archaeoglobus profundus DSM
5631]
Length = 435
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 135/347 (38%), Gaps = 53/347 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ AGR GKT A ++ T PG +A S Q ++ ++ ++LS K
Sbjct: 44 VVAGRRFGKTECMAVSAIYYALTNPGSIQFVIAPSYDQ-SNIMFGQIVQFLS----KSIL 98
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
++ P++ H DS + S +P+ GH II DEA+
Sbjct: 99 GCMIRRIYKTPFH----HIIFKNDS-----VIHARSASKPEFLRGHK---AHRIILDEAA 146
Query: 202 GTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGK--FYEIFNK----PLDDWKRFQID 254
P DVI+ I L + N + WI P GK FY+ + K D+ ++
Sbjct: 147 FIPDDVISNIIEPMLADYNGS--WIKIGTP---FGKNHFYDTYLKGQSPDFPDYSSYRFP 201
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP------------QQDIDSFIPLNII 302
+ I F E YG +S + R E +F Q+++D+ I L
Sbjct: 202 STVNPHISHEFIEKKKREYGENSIIFRTEYLAEFVEDQNAVFRWADIQKNVDNSIELIDS 261
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
E ++++ ++GCD+A+ +VVL L + + + R I
Sbjct: 262 AENVSKQ--------YVIGCDLAKYQDYTVIVVLDVTEKPYKLVHFERFNRRPYAEVIMR 313
Query: 363 LVEKYRP---DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
L E YR ++ID+ G + L+ +G Y V K V L
Sbjct: 314 LKELYRRFNYAKVLIDSTGVGDPVLEDLQDVGAEGY-VFTPKSKVQL 359
>gi|159897183|ref|YP_001543430.1| hypothetical protein Haur_0654 [Herpetosiphon aurantiacus ATCC
23779]
gi|159890222|gb|ABX03302.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 472
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 145/394 (36%), Gaps = 82/394 (20%)
Query: 78 FKGAISAGRGIGKTTLNAWLV-LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
++ + A +GKT L LV W S PG+ V+ A ++ Q++ LW EV +
Sbjct: 36 YRTLVKACHKVGKTHLGGGLVNWWYDSFDPGL-VLTTAPTDRQVRDLLWKEVR--MQRRG 92
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ +S L P H++ ++ + D+F GHH+ + + I
Sbjct: 93 RAGFTGPKSPRLESTP--------------DHFA---HGFTAKDGDSFQGHHSPHTLFIF 135
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNP---------RRLSGKFYEI------- 240
DEA G V E A W+ NP LSG ++ I
Sbjct: 136 -DEAVGVASVFWETAESMFNEGGA---WLAIFNPTDTSSQAYAEELSGGWHVISMSVLEH 191
Query: 241 ---------FNKPLDDWKRF-QIDT------RTVEGIDPSFHEGIIAR--YGLDSDVTRV 282
P R ++DT R + +P I R + +
Sbjct: 192 PNILAELQGLPPPFPSAIRLSRVDTLLKKWCRALSPEEPKRATDIHWRDAWYRPGPIAEA 251
Query: 283 EVCGQFPQQ---DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
+ G++P Q ++ S + E L P P +GCD+A G D T + +RRG
Sbjct: 252 RLLGRWPSQATNNVWSDGAFQVAESLL----LPASDEPCELGCDVARYGDDFTEIHVRRG 307
Query: 340 P---VIEHLFDWSKTDLRTTNNKISGLVEKY--------RPDAIIIDANNTGARTCDYLE 388
E WS + T ++ L +Y R A+ ID + G D +
Sbjct: 308 GHSLYHEAANGWSTVE---TAGRLKQLANEYGRRCGVDGRAVAVKIDDDGIGGGVVDLAD 364
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
GY V G + A D E NRR+EL +A+
Sbjct: 365 --GYTFLGVSGARTAYDPEKYPNRRSELWFSVAE 396
>gi|241763591|ref|ZP_04761642.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
gi|241367184|gb|EER61538.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
Length = 521
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 21/209 (10%)
Query: 295 SFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS---K 350
IP ++ A R +P D ++G D A G D T V R + L
Sbjct: 290 QLIPTEWVKAAQARWQPRQDKGPMTVLGLDPARGGTDKTSVARRHDCWFDVLISEPGIVT 349
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC- 409
D TT + LV P I +DA G+ D+++ LG VY V+G +R+ ++
Sbjct: 350 KDGPTTAAFTAPLVRNGAP--IAVDAIGIGSSALDFIQGLGLLVYAVVGSERSDHMDKAG 407
Query: 410 ----RNRRTELHVKMADWLEFA-----SLINHSGLIQNLKSLKSFIVPNTGELAIESK-- 458
RNRR E++ ++ + L+ +L L+ +L +++ +V AI+ +
Sbjct: 408 TMRFRNRRAEMYWRLREALDPTAEQPIALPPDQELLGDLTAVRYKVVTMGQGAAIQIRDK 467
Query: 459 ---RVKGAKSTDYSDGLMYTFAENPPRSD 484
R +S D D + TF E P D
Sbjct: 468 DEIREALGRSPDKGDSVAMTFCEGIPLLD 496
>gi|161789175|ref|YP_001595730.1| PacB [Vibrio sp. 0908]
gi|161761461|gb|ABX77106.1| PacB [Vibrio sp. 0908]
Length = 572
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 12/172 (6%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
+ +N P + ++++G G GK+ L A L L + T P + ANS Q+ +++
Sbjct: 50 IEVINALTPVGARVSVASGHGTGKSHLTAALCLHFIITHPESLCMLTANSLDQVTNVVFS 109
Query: 127 EVSK-WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+ + W+ + + W E Q + +Y+ G+ + +T S+ +
Sbjct: 110 YIKRCWVKICQRQPWLE-QYFVITAKSFYAKGYK---GV----WQIFGKTCSKGNEEGLA 161
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
G H M ++ DEASG D + G LTE N N+ ++ S R +G F
Sbjct: 162 GQHRRDYMVVV-DEASGVSDRAFEVLRGALTEDN-NKM-LLISQFTRPTGHF 210
>gi|260580755|ref|ZP_05848581.1| phage terminase large subunit [Haemophilus influenzae RdAW]
gi|260092572|gb|EEW76509.1| phage terminase large subunit [Haemophilus influenzae RdAW]
Length = 447
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 35/203 (17%)
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A+EG D+ G V+ + W D+ + N+ + K++ D II D+
Sbjct: 245 VGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGV 304
Query: 380 GA-------RTCDYLEMLGYHV---------YRVLGQK--------RAVDLEFCRNR--R 413
GA R L++ G++ + G+K +A R+R +
Sbjct: 305 GAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYK 364
Query: 414 TELHVKMADWLEFASLINHSGLIQNLKSLKSFI------VPNTGELAIESK---RVKGAK 464
T VK D LI+ S I+ L+ LK+ + N G + +ESK + +G
Sbjct: 365 TYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIP 424
Query: 465 STDYSDGLMYTFAENPPRSDMDF 487
S + +D L+ +A P+S +D
Sbjct: 425 SPNMADALVMCYAPTKPKSLLDL 447
>gi|16273317|ref|NP_439561.1| terminase large subunit-like protein [Haemophilus influenzae Rd
KW20]
gi|1175785|sp|P44184|Y1410_HAEIN RecName: Full=Uncharacterized protein HI_1410
gi|1574247|gb|AAC23058.1| predicted coding region HI1410 [Haemophilus influenzae Rd KW20]
Length = 394
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 35/203 (17%)
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A+EG D+ G V+ + W D+ + N+ + K++ D II D+
Sbjct: 192 VGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGV 251
Query: 380 GA-------RTCDYLEMLGYHV---------YRVLGQK--------RAVDLEFCRNR--R 413
GA R L++ G++ + G+K +A R+R +
Sbjct: 252 GAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYK 311
Query: 414 TELHVKMADWLEFASLINHSGLIQNLKSLKSFI------VPNTGELAIESK---RVKGAK 464
T VK D LI+ S I+ L+ LK+ + N G + +ESK + +G
Sbjct: 312 TYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIP 371
Query: 465 STDYSDGLMYTFAENPPRSDMDF 487
S + +D L+ +A P+S +D
Sbjct: 372 SPNMADALVMCYAPTKPKSLLDL 394
>gi|85058727|ref|YP_454429.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84779247|dbj|BAE74024.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 456
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
+P +G D+A+EG D+ ++L G V+ HL W+K D+ + +++ E D I
Sbjct: 234 EPAGKKRIGFDVADEGEDSNALILSHGSVVMHLETWNKGDVIQSADRVKNYAESVIADEI 293
Query: 373 IIDANNTGA 381
I D+ GA
Sbjct: 294 IFDSIGVGA 302
>gi|282880015|ref|ZP_06288737.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
5C-B1]
gi|281306129|gb|EFA98167.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
5C-B1]
Length = 459
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 100/230 (43%), Gaps = 33/230 (14%)
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-------EPCPDPYAPLIMGCDIAEEGG 329
+D+ R++V G FP+ D+ IP +E A +R + P YA + G D+A G
Sbjct: 221 NDLFRIKVLGLFPKASEDTLIPFEWLELAHDRWKKLNAEDFVPRKYARV--GIDVAGMGR 278
Query: 330 DNTVVVLRRG---PVIEHLFDWSKTD-LRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
D++ VLR G P I+ K D ++ + LVEK ++ID GA
Sbjct: 279 DSSCFVLRYGNYVPEIKIHQSGGKADHMKVAGEAVQWLVEK--NTKVMIDTIGEGAGVYS 336
Query: 386 YLEMLGY-HVYRVL---GQKRAVDL----EFCRNRRTELHVKMADWLEFASLINHS---- 433
L LGY + Y G K D+ EF N R + + DWL + N +
Sbjct: 337 RLLELGYDNAYSCKFSEGTKGLHDITGQYEFA-NMRAYCYWAVRDWLNPKNGFNPALPPC 395
Query: 434 -GLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
L L + + ++G + IE K + + +S D +D L+ TF N
Sbjct: 396 DELDAELTEVH-WSFQSSGSIIIEPKENIKSRLKRSPDRADALISTFYPN 444
>gi|68250076|ref|YP_249188.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
gi|68058275|gb|AAX88528.1| predicted phage terminase large subunit [Haemophilus influenzae
86-028NP]
Length = 447
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 35/203 (17%)
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A+EG D+ G V+ + W D+ + N+ + K++ D II D+
Sbjct: 245 VGFDVADEGADSNDNAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGV 304
Query: 380 GA-------RTCDYLEMLGYHV---------YRVLGQK--------RAVDLEFCRNR--R 413
GA R L++ G++ + G+K +A R+R +
Sbjct: 305 GAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYK 364
Query: 414 TELHVKMADWLEFASLINHSGLIQNLKSLKSFI------VPNTGELAIESK---RVKGAK 464
T VK D LI+ S I+ L+ LK+ + N G + +ESK + +G
Sbjct: 365 TYRAVKHGDVYPDDELISLSSNIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIP 424
Query: 465 STDYSDGLMYTFAENPPRSDMDF 487
S + +D L+ +A P+S +D
Sbjct: 425 SPNMADALVMCYATTKPKSLLDL 447
>gi|319776448|ref|YP_004138936.1| phage terminase large subunit [Haemophilus influenzae F3047]
gi|319897217|ref|YP_004135412.1| phage terminase large subunit [Haemophilus influenzae F3031]
gi|329123931|ref|ZP_08252483.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
gi|317432721|emb|CBY81084.1| predicted phage terminase large subunit [Haemophilus influenzae
F3031]
gi|317451039|emb|CBY87270.1| predicted phage terminase large subunit [Haemophilus influenzae
F3047]
gi|327468126|gb|EGF13613.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
Length = 447
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 35/203 (17%)
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A+EG D G V+ + W D+ + N+ + K++ D II D+
Sbjct: 245 VGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGV 304
Query: 380 GA-------RTCDYLEMLGYHV--------YRVLGQKRAVDLE---------FCRNR--R 413
GA R L++ G++ + K+ D+ R+R +
Sbjct: 305 GAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKNQDMFSNIKAQSWWALRDRFYK 364
Query: 414 TELHVKMADWLEFASLINHSGLIQNLKSLKSFI------VPNTGELAIESK---RVKGAK 464
T VK D LI+ S I+ L+ LK+ + N G + +ESK + +G
Sbjct: 365 TYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIP 424
Query: 465 STDYSDGLMYTFAENPPRSDMDF 487
S + +D L+ +A P+S +D
Sbjct: 425 SPNMADALVMCYAPTKPKSLLDL 447
>gi|145629503|ref|ZP_01785301.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|145641440|ref|ZP_01797019.1| predicted phage terminase large subunit [Haemophilus influenzae
R3021]
gi|144978346|gb|EDJ88110.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|145273983|gb|EDK13850.1| predicted phage terminase large subunit [Haemophilus influenzae
22.4-21]
gi|309750959|gb|ADO80943.1| Probable bacteriophage terminase, large subunit [Haemophilus
influenzae R2866]
Length = 447
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 35/203 (17%)
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A+EG D G V+ + W D+ + N+ + K++ D II D+
Sbjct: 245 VGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGV 304
Query: 380 GA-------RTCDYLEMLGYHV--------YRVLGQKRAVDLE---------FCRNR--R 413
GA R L++ G++ + K+ D+ R+R +
Sbjct: 305 GAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKNQDMFSNIKAQSWWALRDRFYK 364
Query: 414 TELHVKMADWLEFASLINHSGLIQNLKSLKSFI------VPNTGELAIESK---RVKGAK 464
T VK D LI+ S I+ L+ LK+ + N G + +ESK + +G
Sbjct: 365 TYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIP 424
Query: 465 STDYSDGLMYTFAENPPRSDMDF 487
S + +D L+ +A P+S +D
Sbjct: 425 SPNMADALVMCYAPTKPKSLLDL 447
>gi|145638997|ref|ZP_01794605.1| terminase large subunit-like protein [Haemophilus influenzae
PittII]
gi|145271969|gb|EDK11878.1| terminase large subunit-like protein [Haemophilus influenzae
PittII]
Length = 379
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 35/203 (17%)
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A+EG D G V+ + W D+ + N+ + K++ D II D+
Sbjct: 177 VGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGV 236
Query: 380 GA-------RTCDYLEMLGYHV--------YRVLGQKRAVDLE---------FCRNR--R 413
GA R L++ G++ + K+ D+ R+R +
Sbjct: 237 GAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKNQDMFSNIKAQSWWALRDRFYK 296
Query: 414 TELHVKMADWLEFASLINHSGLIQNLKSLKSFI------VPNTGELAIESK---RVKGAK 464
T VK D LI+ S I+ L+ LK+ + N G + +ESK + +G
Sbjct: 297 TYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIP 356
Query: 465 STDYSDGLMYTFAENPPRSDMDF 487
S + +D L+ +A P+S +D
Sbjct: 357 SPNMADALVMCYAPTKPKSLLDL 379
>gi|189460514|ref|ZP_03009299.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
gi|189432758|gb|EDV01743.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
Length = 556
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 89/235 (37%), Gaps = 43/235 (18%)
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL-----IMGCDIAEEGGDNT 332
D+ R +V G FP+ D D+ IP +EEA R PL I+G D+A G D T
Sbjct: 309 DLFRKKVLGLFPKVDEDTLIPRQWLEEAHERWKQAKGREPLRADLNILGVDVAGMGRDAT 368
Query: 333 VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI----IIDANNTGAR------ 382
VLRR + FD + + K++G + R I ID GA
Sbjct: 369 CYVLRRDNWVAS-FDTHNSGGVADHMKVAGKIMVARRQNIGLYVSIDTIGEGAGVYSRCV 427
Query: 383 ----------TCDYLEML----GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL---- 424
+C Y E G + + GQ + N R L + DWL
Sbjct: 428 ELEDEPHYILSCKYSESAKTPNGRELSDITGQNKFF------NMRAYLFWAVRDWLNPRN 481
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
+++ + F V + G+L IE K + + +S D D L TF
Sbjct: 482 NTGAMLPPDDKFDEEATEIKFSVKSNGKLYIEPKEDIKERLGRSPDKFDALANTF 536
>gi|53793591|ref|YP_112491.1| terminase large subunit [Flavobacterium phage 11b]
gi|53748181|emb|CAH56642.1| terminase large subunit [Flavobacterium phage 11b]
Length = 432
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 21/176 (11%)
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP--DA 371
P+ + + DIA G D V+ + G + +F +K+ + + GL K++
Sbjct: 248 PFGEMYISADIARFGSDKMVICVWSGFRVVEIFSMAKSSITEIAEAVRGLSIKHKVPLSN 307
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLE----FCRNRRTELHVKMADWLEFA 427
+I D + G D L G+ + RA++++ +N +T+ + K+A+ ++
Sbjct: 308 VICDEDGVGGGVVDVLGCTGF-----INNSRAMEVDNQVVQYQNLKTQCYYKLAEVIQSN 362
Query: 428 SLINHS-------GLIQNLKSLKSFIVPNTGELAIESK-RVKGA--KSTDYSDGLM 473
+L HS + + L+ +K + + G+L + SK +VK A +S DYSD LM
Sbjct: 363 NLYIHSEDATVNDEITKELEQVKRDKIDSDGKLQLISKDKVKQAIGRSPDYSDALM 418
>gi|301170180|emb|CBW29784.1| predicted phage terminase large subunit [Haemophilus influenzae
10810]
Length = 447
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 35/203 (17%)
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A+EG D+ G V+ + W + + N+ + K++ D II D+
Sbjct: 245 VGFDVADEGADSNANAFVHGSVVLDIEVWKNGYVIDSANRTNQSAVKFKADLIIFDSIGV 304
Query: 380 GA-------RTCDYLEMLGYHV---------YRVLGQK--------RAVDLEFCRNR--R 413
GA R L++ G++ + G+K +A R+R +
Sbjct: 305 GAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYK 364
Query: 414 TELHVKMADWLEFASLINHSGLIQNLKSLKSFI------VPNTGELAIESK---RVKGAK 464
T VK D LI+ S I+ L+ LK+ + N G + +ESK + +G
Sbjct: 365 TYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIP 424
Query: 465 STDYSDGLMYTFAENPPRSDMDF 487
S + +D L+ +A P+S +D
Sbjct: 425 SPNMADALVMCYAPTKPKSLLDL 447
>gi|329119006|ref|ZP_08247700.1| phage terminase large subunit [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464879|gb|EGF11170.1| phage terminase large subunit [Neisseria bacilliformis ATCC
BAA-1200]
Length = 449
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
I+G D+A+EG D VLR G V+ + W D+ + +K+ ++ D I+ D
Sbjct: 240 ILGFDVADEGDDANATVLRHGSVVTDMQQWRGQDVIYSADKVYLYAQEQNVDRIVYDNIG 299
Query: 379 TGA-------RTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
GA R ++ LG++ + + A + +NR ++K W
Sbjct: 300 VGAGVKAQFRRKNGKVQTLGFNAGGAVYKPDAKYTDDKKNRDMFANIKAQAW 351
>gi|254781186|ref|YP_003065599.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040863|gb|ACT57659.1| hypothetical protein CLIBASIA_05465 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 45
Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYH-VYRVLGQKRAV 404
+ +Y PDAI++ AN GA T +YLE L Y + ++LGQ+ +V
Sbjct: 1 MAHQYNPDAIVLYANGIGAVTANYLENLNYSPIEKILGQRSSV 43
>gi|153806881|ref|ZP_01959549.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
gi|149131558|gb|EDM22764.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
Length = 513
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 98/234 (41%), Gaps = 47/234 (20%)
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR---EPCPDPYAP---LIMGCDIAEEGGD 330
+D+ RV+V G FP+ D IP IE A NR E + P +G D+A G D
Sbjct: 275 NDLFRVKVLGMFPKVSEDVLIPYEWIEIA-NRNWQELQASGFIPAKSCKLGVDVAGMGRD 333
Query: 331 NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP--------DAI---------I 373
N+V+ R G + FD ++ R + + G+ Y D I +
Sbjct: 334 NSVLCPRYGNYVPQ-FDVHQSAGRADHMHVVGMTIPYLKKKGAKAFIDTIGEGAGVYSRL 392
Query: 374 IDANNTGARTCDYLEML-GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-----FA 427
++ T A +C Y E G H + G+ EF N R L+ + DWL A
Sbjct: 393 LEEEFTNAFSCKYSEGTDGLH--DITGE-----YEFA-NMRAYLYWALRDWLNPKNGFGA 444
Query: 428 SLINHSGLIQNLKSLKSFIVPNTGELAIE-----SKRVKGAKSTDYSDGLMYTF 476
+L L++ K + N G++ IE KR+K +S DY D L TF
Sbjct: 445 ALPPCDQLMEEATETKWKFLSN-GKVIIEPKEDVKKRIK--RSPDYMDALANTF 495
>gi|309379923|emb|CBX21334.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 449
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
I+G D+A+EG D VLR G V+ + W D+ + +K+ ++ D I+ D
Sbjct: 240 ILGFDVADEGDDANATVLRHGSVVTDMRQWRGQDVIYSADKVYLYAQEQDIDRIVYDNIG 299
Query: 379 TGA-------RTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
GA R ++ LG++ + + A + +NR ++K W
Sbjct: 300 VGAGVKAQFRRKRGKVQTLGFNAGGAVYKPDAKYTDDKKNRDMFANIKAQAW 351
>gi|303243859|ref|ZP_07330199.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
IH1]
gi|302485795|gb|EFL48719.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
IH1]
Length = 445
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 126/328 (38%), Gaps = 45/328 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
++AGR GK+ L A+L+++L ST+ +A + ++ E+ K++ +
Sbjct: 56 VAAGRRFGKSKLMAFLLIFLCSTQKNKKYAVIAPFYANAR-IIFRELKKYIE---KSNVL 111
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ +P+ + ID + S + P + G +Y + I+++ A
Sbjct: 112 SRLVKRMVESPYMAIEFKTGCTIDFR---------SADNPTSIRGE--SYHLVILDEAAF 160
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR---FQIDTRTV 258
DV+ I L + +A I T N FYE F + R F+ T T
Sbjct: 161 IKDDVVKYVIKPLLLDYDAPLIEISTPNGH---NHFYESFLMGKNKQNRHISFRFPTWTN 217
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQF------------PQQDIDSFIPLNIIEEAL 306
+ + E I G DS V + E C +F QQ ID I L E+
Sbjct: 218 PFLPKNAIEEIKQEVGEDSPVWKQEYCAEFIDNNEAVFNWEYIQQCIDGTIKLLKSGESG 277
Query: 307 NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL---RTTNNKISGL 363
++ +MG D+A+ + VL L + + +L +K+ L
Sbjct: 278 HQ---------YVMGVDLAKFEDYTVITVLDVSVKPYKLVYFERFNLMPYSFVADKVKEL 328
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLG 391
+ + + +DA GA + +E L
Sbjct: 329 YQLFNKPQVCMDATGPGAAVVEQVESLN 356
>gi|310641214|ref|YP_003945972.1| malate dehydrogenase, nad-dependent [Paenibacillus polymyxa SC2]
gi|309246164|gb|ADO55731.1| malate dehydrogenase, NAD-dependent [Paenibacillus polymyxa SC2]
Length = 313
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLV----EKYRPDAIII 374
IMG E+ D+ +V++ G I S+ DL TN I V +KY PD+I+I
Sbjct: 64 IMGTSNYEDAADSDIVIITAG--IARKPGMSRDDLVNTNAGIVKSVCENVKKYAPDSIVI 121
Query: 375 DANN-TGARTCDYLEMLGYHVYRVLGQKRAVD-LEFCRNRRTELHVKMADWLEF 426
+N A T + L + RV+GQ +D +C EL+V + D F
Sbjct: 122 ILSNPVDAMTYTAYQTLDFPKNRVIGQSGVLDTARYCTFIAQELNVSVEDVRGF 175
>gi|226940436|ref|YP_002795510.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715363|gb|ACO74501.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 93
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 31 FVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ LH + WG LEG + PR+WQ E M + H NP A AGRG+G
Sbjct: 22 WALHAYDWGRG--ELEGVTGPRAWQREVMSDIGNHL------KNPATRFSAFDAGRGLG 72
>gi|325295250|ref|YP_004281764.1| mutual gliding protein A [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065698|gb|ADY73705.1| mutual gliding protein A [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 193
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
YG+D + + + Q+ ++D+ + +P+ I+++ LNR CPD A I G + E + T
Sbjct: 127 YGID--IKEIPLVFQYNKRDLPNVLPIEILKKDLNRWKCPDFEAIAIKGIGVLETFKEIT 184
Query: 333 VVVLRR 338
VLR+
Sbjct: 185 KQVLRK 190
>gi|308068360|ref|YP_003869965.1| Malate dehydrogenase (Vegetative protein 69) [Paenibacillus
polymyxa E681]
gi|305857639|gb|ADM69427.1| Malate dehydrogenase (Vegetative protein 69) [Paenibacillus
polymyxa E681]
Length = 313
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLV----EKYRPDAIII 374
I G E+ ++ +V++ G I S+ DL TN I V +KY PD+I+I
Sbjct: 64 ITGTSNYEDAANSDIVIITAG--IARKPGMSRDDLVNTNAGIVKSVCENVKKYAPDSIVI 121
Query: 375 DANN-TGARTCDYLEMLGYHVYRVLGQKRAVD-LEFCRNRRTELHVKMADWLEF 426
+N A T + LG+ RV+GQ +D +C EL+V + D F
Sbjct: 122 ILSNPVDAMTYTAYQTLGFPKNRVIGQSGVLDTARYCTFIAQELNVSVEDVRGF 175
>gi|22074007|gb|AAL05293.1| replication-associated protein [Tomato yellow leaf curl virus -
Gezira]
Length = 359
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 23/150 (15%)
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF-PQQDIDSFIPLNIIEEA 305
DW +FQID R+ G S ++ A S + V + P+ I F LN +
Sbjct: 112 DWGQFQIDGRSARGGQQSANDAYAAAINSGSKAEALRVLRELAPRDYILQFHNLNSNLDR 171
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ +EP P PY+ + + V E L W + N +S
Sbjct: 172 IFQEP-PAPYSSPFLSSSFNQ--------------VPEELEVW------VSENVMSSAAR 210
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+RP++III+ ++ +T + LG H Y
Sbjct: 211 PWRPNSIIIEGDSRTGKTM-WARSLGPHNY 239
>gi|148826888|ref|YP_001291641.1| phage terminase large subunit [Haemophilus influenzae PittGG]
gi|148718130|gb|ABQ99257.1| predicted phage terminase large subunit [Haemophilus influenzae
PittGG]
Length = 366
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A+EG D+ G V+ + W D+ + N+ + K++ D II D+
Sbjct: 245 VGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGV 304
Query: 380 GARTCDYLEML 390
GA + + L
Sbjct: 305 GAGVKAHFKRL 315
>gi|2497856|sp|Q59202|MDH_BACIS RecName: Full=Malate dehydrogenase
gi|963019|emb|CAA62129.1| malate dehydrogenase [Bacillus israeli]
Length = 312
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI----SGLVEKYRPDAIII 374
I+G EE D+ +VV+ G I S+ DL TN K+ + V KY P++III
Sbjct: 64 IIGTSNYEETADSDIVVITAG--IARKPGMSRDDLVQTNQKVMKSVTKEVVKYSPNSIII 121
Query: 375 DANN-TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRN-RRTELHVKMADWLEF 426
N A T + G+ +RV+GQ +D R EL++ + D F
Sbjct: 122 VLTNPVDAMTYTVYKESGFPKHRVIGQSGVLDTARFRTFVAQELNLSVKDITGF 175
>gi|40737892|gb|AAR89439.1| replication associated protein C1 [Tomato yellow leaf curl Mali
virus]
Length = 359
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 23/150 (15%)
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF-PQQDIDSFIPLNIIEEA 305
DW FQID R+ G S ++ A S + V + P+ + F LN +
Sbjct: 112 DWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALRVIKELAPKDYVLQFHNLNSNLDR 171
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ +EP P PY + + V E L W + N +S
Sbjct: 172 IFQEP-PAPYISPFLSSSFNQ--------------VPEELEVW------VSENVMSSAAR 210
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+RPD+I+I+ ++ +T + LG H Y
Sbjct: 211 PWRPDSIVIEGDSRTGKTM-WARSLGPHNY 239
>gi|219965987|emb|CAR82110.1| replication associated protein (Rep) [Tomato yellow leaf curl Mali
virus]
Length = 359
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 23/150 (15%)
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF-PQQDIDSFIPLNIIEEA 305
DW FQID R+ G S ++ A S + V + P+ + F LN +
Sbjct: 112 DWGEFQIDGRSARGGQQSANDAYAAAINAGSKSEALRVIRELAPKDYVLQFHNLNSNLDR 171
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ +EP P PY + + V E L W + N +S
Sbjct: 172 IFQEP-PAPYISPFLSSSFNQ--------------VPEELEIW------VSENVMSSAAR 210
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+RPD+I+I+ ++ +T + LG H Y
Sbjct: 211 PWRPDSIVIEGDSRTGKTM-WARSLGPHNY 239
>gi|219965994|emb|CAR82116.1| replication associated protein (Rep) [Tomato yellow leaf curl Mali
virus]
Length = 359
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 23/150 (15%)
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF-PQQDIDSFIPLNIIEEA 305
DW FQID R+ G S ++ A S + V + P+ + F LN +
Sbjct: 112 DWGEFQIDGRSARGGQQSANDAYAAAINAGSKSEALRVIRELAPKDYVLQFHNLNSNLDR 171
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ +EP P PY + + V E L W + N +S
Sbjct: 172 IFQEP-PAPYISPFLSSSFNQ--------------VPEELEIW------VSENVMSSAAR 210
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+RPD+I+I+ ++ +T + LG H Y
Sbjct: 211 PWRPDSIVIEGDSRTGKTM-WARSLGPHNY 239
>gi|260945527|ref|XP_002617061.1| hypothetical protein CLUG_02505 [Clavispora lusitaniae ATCC 42720]
gi|238848915|gb|EEQ38379.1| hypothetical protein CLUG_02505 [Clavispora lusitaniae ATCC 42720]
Length = 348
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 382 RTCDYLEMLGYHVYRVLGQKRA---VDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
RT +YLE G V RA V FCR W E A++++HS +
Sbjct: 190 RTMEYLETQGVLVSTFNDDGRANIEVPSFFCRESGVRSPYSFTSWKEIAAVVHHSNNLMQ 249
Query: 439 LKSLKSFIVPNTGELAIESKRVKG 462
L+S +P E+A+ S+ + G
Sbjct: 250 LQSGNLLCIPPPAEIALSSELMSG 273
Searching..................................................done
Results from round 2
>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040892|gb|ACT57688.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120680|gb|ADV02503.1| putative phage terminase large subunit [Liberibacter phage SC1]
gi|317120824|gb|ADV02645.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 511
Score = 727 bits (1876), Expect = 0.0, Method: Composition-based stats.
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME
Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL
Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI
Sbjct: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM
Sbjct: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP
Sbjct: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
Query: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR 511
PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR
Sbjct: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR 511
>gi|315122902|ref|YP_004063391.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496304|gb|ADR52903.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats.
Identities = 373/508 (73%), Positives = 428/508 (84%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M+RELPT E EQ+L +LM+SD+IKLSF+NFVL FPW E T L FS PR WQL+FME
Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VD CL +V+NP+P++FKGA+SAGRGIGKTTLNAW++LWL+STRPG+S++CLANSETQL
Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K+TLWAEVSKWLS+LPNKHWFEMQSLSLHPA WY++ L + GIDSKHY+ CRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAI NDEASGTPDVIN ILGF TE NANRFW+MTSNPRRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLNGWFYDI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FN PL+DW+RFQIDTRTVEGIDP+FHE IIARYGLDSDVTRVEV GQFPQQDI+SFIP
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPNFHENIIARYGLDSDVTRVEVLGQFPQQDINSFIPFY 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
IEEALNREP DPYAPL+MGCDIA EGGDNTVVVLRRG IEH+FDWS + ++ KI
Sbjct: 301 RIEEALNREPIKDPYAPLVMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNVSSRKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
L+ KY+PDA+++DAN G +T YL GY V+ GQ RA D E RNRRTELHVKM
Sbjct: 361 EELINKYKPDAVVVDANGIGVQTYYYLADEGYSVHPEKGQNRADDHESYRNRRTELHVKM 420
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
A+WLE AS+ +HSGLIQNLKSL+SFI PNTG+LA+ESKRVKGA STDYSD L YTFA +P
Sbjct: 421 AEWLELASIPHHSGLIQNLKSLESFIEPNTGKLALESKRVKGAVSTDYSDALAYTFAVSP 480
Query: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEY 508
RSDM+FGRC SYQYE +LL++RRF Y
Sbjct: 481 ARSDMNFGRCRSYQYEADELLVDRRFSY 508
>gi|315121940|ref|YP_004062429.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495342|gb|ADR51941.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats.
Identities = 376/508 (74%), Positives = 428/508 (84%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M+RELPT E EQ+L +LM+SD+IKLSF+NFVL FPW E T L FS PR WQL+FME
Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VD CL +V+NP+P++FKGA+SAGRGIGKTTLNAW++LWL+STRPG+S++CLANSETQL
Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K+TLWAEVSKWLS+LPNKHWFEMQSLSLHPA WY++ L + GIDSKHY+ CRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAI NDEASGTPDVIN ILGF TE NANRFW+MTSNPRRL G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLKGWFYDI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FN PL+DW+RFQIDTRTVEGIDPSFHEGII+RYGLDSDVTRVEV GQFPQQDI+SFIP
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPSFHEGIISRYGLDSDVTRVEVLGQFPQQDINSFIPFY 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
IEEALNREP DPYAPLIMGCDIA EGGDNTVVVLRRG IEH+FDWS + ++ KI
Sbjct: 301 RIEEALNREPIKDPYAPLIMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNASSRKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
L+ KY+PDA+++DAN G +T YL GY V+ GQ RA D E RNRRTELHVKM
Sbjct: 361 EELINKYKPDAVVVDANGIGVQTYYYLADEGYSVHAEKGQNRADDHESYRNRRTELHVKM 420
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
A+WLE AS+ NHSGLIQNLKSL+SFI PNTG+LA+ESKRVKGA STDYSD L YTFA +P
Sbjct: 421 AEWLELASIPNHSGLIQNLKSLESFIEPNTGKLALESKRVKGAVSTDYSDALAYTFAVSP 480
Query: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEY 508
RSDM+FGRC SYQYE +LL++RRF Y
Sbjct: 481 ARSDMNFGRCRSYQYEADELLVDRRFSY 508
>gi|317120722|gb|ADV02544.1| putative phage terminase large subunit [Liberibacter phage SC2]
gi|317120783|gb|ADV02604.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 516
Score = 621 bits (1601), Expect = e-176, Method: Composition-based stats.
Identities = 392/507 (77%), Positives = 414/507 (81%), Gaps = 9/507 (1%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME
Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL
Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPQQ 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
I EAL R PDPYAPLIMGCDIA EG D TVVVLRRG +IE +FDWS + TN KI
Sbjct: 301 YIVEALERVAIPDPYAPLIMGCDIAGEGEDKTVVVLRRGNIIERIFDWSGELIEVTNRKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGY-HVYRVLGQKRAVDLEFCRNRRTELHVK 419
S L+ +Y PDAI+ID N G YL + + V +LGQ+R+ + E N R EL+
Sbjct: 361 SSLINRYNPDAIVIDGNGIGGTVVSYLLNMHHISVEVILGQRRSTEPEQYHNLRAELYDL 420
Query: 420 MADWLEFASLINHS--GLIQNLKSLKSFIVPNTGELAIESKRVK----GAKSTDYSDGLM 473
M + + LI LKS+KS I G L IE KR G +S D+ D L
Sbjct: 421 MRSAITGGLQLPDDCPDLINELKSIKS-ISDTLGRLLIEKKRQGRSEFGVRSPDFVDALC 479
Query: 474 YTFAENPPRSDMDFGRCPS-YQYEGVD 499
YTFA +PPR D + +YE +D
Sbjct: 480 YTFAVDPPRKDNPLYQGQDISEYEALD 506
>gi|227355862|ref|ZP_03840255.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
gi|227164181|gb|EEI49078.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
Length = 494
Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats.
Identities = 138/495 (27%), Positives = 217/495 (43%), Gaps = 25/495 (5%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MS L +PE EQ + D+ L + + FPWGE G LE ++ PR WQ E +
Sbjct: 1 MSEALQKSPE-EQLIEDIASFTHDPL---GYAYYAFPWGEAGGELEEYNGPRQWQAEALN 56
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ H N P + A ++G GIGK+ + ++ W M T V+ AN+E QL
Sbjct: 57 EIGEHLRNPKTRHQPLLL--ARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQL 114
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+T W E++KW L +WF +++ + + +SE
Sbjct: 115 RTKTWPEIAKWQRLSLTNNWFTCTKTAIYSND----------PNHANAWRADAVPWSENN 164
Query: 181 PDTFVGHHNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
+ F G HN + ++ DEAS D++ G LT+ WI NP R +G+F E
Sbjct: 165 TEAFAGLHNKGKRIILVFDEASNIADLVWEVAEGALTDEGTEIIWIAFGNPTRNTGRFRE 224
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
F K W QID+RTVEG + + YG DSD +V V G FP FIP
Sbjct: 225 CFRKFKHRWNTKQIDSRTVEGSNKEQIKNWEEDYGEDSDFFKVRVRGVFPSASELQFIPT 284
Query: 300 NIIEEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD-WSKTDLRTT 356
+ +EA+ R +AP+I+G D A G D+ V+ LR+G + L+ + TD
Sbjct: 285 GLTDEAMKRIVTQAEVAHAPVIIGVDPAYSGIDDAVIYLRQGLFSKCLWTGFKTTDDVVM 344
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
+I+ ++Y+ DA+ ID G G V + D + N+R E+
Sbjct: 345 AKRIADFEDQYKADAVHID-FGYGTGIHSIGTSWGRVWRLVKFGGASTDPQML-NKRGEM 402
Query: 417 HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLM 473
+ + WL+ I+ +L + + ++ +E K + + +S D L
Sbjct: 403 YNSVKTWLKIGGAIDDQETADDLSCGEYKVRVIDSKIVLEDKTEIKKRLGRSPGKGDALA 462
Query: 474 YTFAENPPRSDMDFG 488
TFA + D ++
Sbjct: 463 LTFAYPVTKIDRNYS 477
>gi|268589373|ref|ZP_06123594.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
gi|291315400|gb|EFE55853.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
Length = 493
Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats.
Identities = 147/486 (30%), Positives = 226/486 (46%), Gaps = 26/486 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ LS + L+ FPWGE GT LE + PR WQ E + + H
Sbjct: 6 SPE-EQLINDIGMFTHDPLS---YALYAFPWGEAGTELENANGPRQWQAEALNEIGEHLR 61
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + ++ W M T V+ AN+E QL+T W E
Sbjct: 62 NPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTKTWPE 119
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
++KW L K WF +++ + + +SE + F G
Sbjct: 120 IAKWQRLSITKDWFTYTKTAIYSND----------PNHANAWRADAVPWSENNTEAFAGL 169
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + +I DEAS D++ G LT+ N WI NP R +G+F E F K
Sbjct: 170 HNQGKRIILIFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFRKFKH 229
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + E I YG+D D +V V G FP FIP + + A+
Sbjct: 230 RWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLTDAAM 289
Query: 307 NREPCPDP--YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT-DLRTTNNKISGL 363
R +AP+I+G D A G D+ V+ LR+G + L+ SKT D +I+
Sbjct: 290 KRTVTQAEVSHAPIIIGVDPAYSGDDDAVIYLRQGLHSKCLWTGSKTIDDVIMAKRIADF 349
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y DA+ ID G G + V + D + RN+R E++ + W
Sbjct: 350 EDQYGADAVHID-FGYGTGIQSVGMNWGRNWQLVQFNGASTDPQM-RNKRGEMYNNVKSW 407
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L+ I+ + ++L + + + V +G++ +ESK + + +S D L TFA
Sbjct: 408 LKIGGAIDDQEVAEDLSTPE-YKVELSGKILLESKDDIKKRIGRSPGKGDALALTFAYPV 466
Query: 481 PRSDMD 486
+ + +
Sbjct: 467 TKKERN 472
>gi|212710820|ref|ZP_03318948.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
30120]
gi|212686517|gb|EEB46045.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
30120]
Length = 493
Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats.
Identities = 144/492 (29%), Positives = 223/492 (45%), Gaps = 28/492 (5%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M + EQ + D+ LS + L+ FPWGE GT LE S PR WQ E +
Sbjct: 1 MIETMSPE---EQLINDIGMFTHDPLS---YALYAFPWGEAGTELENASGPRQWQAEALN 54
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ H N P + A ++G GIGK+ + ++ W M T V+ AN+E QL
Sbjct: 55 EIGEHLRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQL 112
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+T W E++KW L K WF +++ + + +SE
Sbjct: 113 RTKTWPEIAKWQRLSITKDWFTCTKTAIYSND----------PNHANAWRADAVPWSENN 162
Query: 181 PDTFVGHHNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
+ F G HN + ++ DEAS D++ G LT+ N WI NP R +G+F E
Sbjct: 163 TEAFAGLHNQGKRIILVFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRE 222
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
F K WK QID+RTVEG + E I YG+D D +V V G FP FIP
Sbjct: 223 CFRKFKHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPT 282
Query: 300 NIIEEALNREPCPDP--YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT-DLRTT 356
+ + A+ R +AP+I+G D A G D+ V+ LR+G + L+ SKT D
Sbjct: 283 GLTDAAMKRTVTQAEVSHAPIILGVDPAYSGDDDAVIYLRQGLHSKCLWTGSKTIDDVIM 342
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
+I+ ++Y DA+ ID G G + V + D + +N+R E+
Sbjct: 343 AKRIADYEDQYGADAVHID-FGYGTGIQSVGMNWGRNWQLVSFNGASTDPQM-QNKRGEM 400
Query: 417 HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLM 473
+ + WL+ I+ + +L + + + V +G++ +E K + + +S + D L
Sbjct: 401 YNNVKSWLKIGGAIDDQEVADDLSTPE-YKVQLSGKILLEKKEDIKKRIGRSPNKGDALA 459
Query: 474 YTFAENPPRSDM 485
TFA + +
Sbjct: 460 LTFAYPVTKKER 471
>gi|323156136|gb|EFZ42295.1| terminase large subunit [Escherichia coli EPECa14]
Length = 491
Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats.
Identities = 142/493 (28%), Positives = 224/493 (45%), Gaps = 26/493 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A+++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPATRYQPLML--ALASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R YAP+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAYAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSY 493
+ G+
Sbjct: 468 SKRLRLPGQQNQQ 480
>gi|324008564|gb|EGB77783.1| hypothetical protein HMPREF9532_01752 [Escherichia coli MS 57-2]
Length = 491
Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats.
Identities = 142/498 (28%), Positives = 226/498 (45%), Gaps = 27/498 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSYQYEGV 498
+ ++ S Q +
Sbjct: 468 SKR-INIPGQQSQQGRAI 484
>gi|327252187|gb|EGE63859.1| terminase large subunit [Escherichia coli STEC_7v]
Length = 491
Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats.
Identities = 142/493 (28%), Positives = 224/493 (45%), Gaps = 26/493 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPATRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSY 493
+ G+
Sbjct: 468 SKRLRIPGQQNQQ 480
>gi|332344357|gb|AEE57691.1| terminase, large subunit [Escherichia coli UMNK88]
Length = 491
Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats.
Identities = 142/493 (28%), Positives = 224/493 (45%), Gaps = 26/493 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLVEDIASFTYDPL---GYALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSY 493
+ G+
Sbjct: 468 SKRLRLPGQQNQQ 480
>gi|294491573|gb|ADE90329.1| putative phage terminase, large subunit [Escherichia coli IHE3034]
Length = 491
Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats.
Identities = 142/493 (28%), Positives = 224/493 (45%), Gaps = 26/493 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSTAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSY 493
+ G+
Sbjct: 468 SKRLRIPGQQNQQ 480
>gi|330007152|ref|ZP_08305894.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
gi|328535499|gb|EGF61959.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
Length = 495
Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats.
Identities = 140/485 (28%), Positives = 218/485 (44%), Gaps = 25/485 (5%)
Query: 6 PTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAH 65
P EQ + D+ L + L+ FPWGE GT L S PR WQ + + H
Sbjct: 8 PEEQLKEQLIDDIASFTHDPL---GYALYAFPWGEDGTELAHASGPRQWQADAFREIGEH 64
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
N P + + ++G GIGK+ + L+ W MST V+ AN++ QL+T W
Sbjct: 65 LQNPATRHQPLM--ISRASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQLRTKTW 122
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ KW +L K WF + +++ D H K + +SE + F
Sbjct: 123 PEIIKWSNLAITKEWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFA 172
Query: 186 GHHNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 173 GLHNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKY 232
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
WK QID+RTVEG + + + YG DSD +V V G FP FIP + +E
Sbjct: 233 KHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPTGLTDE 292
Query: 305 ALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKIS 361
A+ R +AP I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 293 AMKRVVTAAQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIA 352
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 353 DFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASADPQML-NKRGEMFNACK 410
Query: 422 DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAE 478
WL+ ++ +L + + + V G++ +E K + + +S D L+ TFA
Sbjct: 411 TWLKLGGALDDQETADDLSAAE-YKVRVDGKIVMEPKEDIKERLGRSPGKGDALLLTFAY 469
Query: 479 NPPRS 483
+
Sbjct: 470 PVTKR 474
>gi|218700994|ref|YP_002408623.1| putative phage terminase, large subunit [Escherichia coli IAI39]
gi|218370980|emb|CAR18807.1| putative phage terminase, large subunit [Escherichia coli IAI39]
Length = 491
Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats.
Identities = 143/498 (28%), Positives = 227/498 (45%), Gaps = 27/498 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLIDDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSYQYEGV 498
+ ++ S Q +
Sbjct: 468 SKR-INIPGQQSQQGRAI 484
>gi|309702815|emb|CBJ02146.1| putative terminase, large subunit [Escherichia coli ETEC H10407]
Length = 493
Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats.
Identities = 137/498 (27%), Positives = 228/498 (45%), Gaps = 25/498 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLVEDIAGFTYDPL---GYALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPATRHQPIML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKEWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD +V V G FP + FIP + + A+
Sbjct: 231 RWKCAQIDSRTVEGTNKEQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPAV 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK-ISGL 363
R P +A +++G D + +G D V+ LR+G + L +W +T K I+
Sbjct: 291 GRVITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEWQRTTDDVLFAKVIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G + ++ D E N+R E++ D
Sbjct: 351 EDQYQADAVFID-YGYGTGLKSVGDNWGRNWTLIMFGSGTADPEM-GNKRGEMYKSARDA 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L+ + ++ L L + + + ++ K + +S + +D + T+A
Sbjct: 409 LKLGAQLDSQELADELSAPEYKVRLKDSRKILQDKDEVKELLGRSPNNADAYVLTYAAPV 468
Query: 481 PRSDMDFGRCPSYQYEGV 498
+ ++G+ S Q + +
Sbjct: 469 TKKQFNYGQQQSQQGKAL 486
>gi|298381721|ref|ZP_06991320.1| terminase large subunit protein [Escherichia coli FVEC1302]
gi|301019339|ref|ZP_07183525.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|298279163|gb|EFI20677.1| terminase large subunit protein [Escherichia coli FVEC1302]
gi|299882256|gb|EFI90467.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|323948690|gb|EGB44595.1| hypothetical protein ERKG_04913 [Escherichia coli H252]
Length = 491
Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats.
Identities = 142/493 (28%), Positives = 224/493 (45%), Gaps = 26/493 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSY 493
+ G+
Sbjct: 468 SKRLRIPGQQNQQ 480
>gi|300898423|ref|ZP_07116764.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|300357890|gb|EFJ73760.1| conserved hypothetical protein [Escherichia coli MS 198-1]
Length = 491
Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats.
Identities = 142/493 (28%), Positives = 224/493 (45%), Gaps = 26/493 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRKWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSY 493
+ G+
Sbjct: 468 SKRLRIPGQQNQQ 480
>gi|117624715|ref|YP_853628.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
gi|115513839|gb|ABJ01914.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
Length = 491
Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats.
Identities = 141/493 (28%), Positives = 224/493 (45%), Gaps = 26/493 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R ++P+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAHSPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSY 493
+ G+
Sbjct: 468 SKRLRIPGQQNQQ 480
>gi|89152423|ref|YP_512256.1| putative terminase large subunit [Escherichia phage phiV10]
gi|74055446|gb|AAZ95895.1| putative terminase large subunit [Escherichia phage phiV10]
Length = 491
Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats.
Identities = 141/493 (28%), Positives = 223/493 (45%), Gaps = 26/493 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG SD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEGSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSTAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSY 493
+ G+
Sbjct: 468 SKRLRIPGQQNQQ 480
>gi|331648179|ref|ZP_08349269.1| conserved hypothetical protein [Escherichia coli M605]
gi|331043039|gb|EGI15179.1| conserved hypothetical protein [Escherichia coli M605]
Length = 491
Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats.
Identities = 142/493 (28%), Positives = 224/493 (45%), Gaps = 26/493 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE+GT L + PR WQ + + H
Sbjct: 7 SPE-EQLIEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNACKIW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSY 493
+ G+
Sbjct: 468 SKRLRIPGQQNQQ 480
>gi|30387381|ref|NP_848210.1| terminase large subunit [Enterobacteria phage epsilon15]
gi|30266036|gb|AAO06065.1| terminase large subunit [Salmonella phage epsilon15]
Length = 491
Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats.
Identities = 141/494 (28%), Positives = 223/494 (45%), Gaps = 26/494 (5%)
Query: 12 EQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVN 71
EQ + D+ L + L+ FPWGE GT L + PR WQ + + H N
Sbjct: 10 EQLVEDIASFTYDPL---GYALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQNPAT 66
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E+ KW
Sbjct: 67 RHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKW 124
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+L K WF + +++ D H K + +SE + F G HN
Sbjct: 125 SNLAITKEWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGLHNER 174
Query: 192 G-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
+ ++ DEAS D++ G LT+ + W+ NP R +G+F E F K WK
Sbjct: 175 KRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKC 234
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-- 308
QID+RTVEG + + + YG +SD +V V G FP FIP + +EA+ R
Sbjct: 235 AQIDSRTVEGTNKQQLQKWVDDYGEESDFVKVRVRGIFPDASELQFIPTGLTDEAMKRVV 294
Query: 309 EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKY 367
+AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+ ++Y
Sbjct: 295 TAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQY 354
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA 427
+ DA+ ID G + G + + D + N+R E+ WL+
Sbjct: 355 QADAVFID-FGYGTGLKSIGDGWGRTWQLIPFGGGSTDPQML-NKRGEMFNSCKTWLKLG 412
Query: 428 SLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSD 484
++ +L + + + V G++ IE K + + +S D L+ TFA +
Sbjct: 413 GALDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPVTKH- 470
Query: 485 MDFGRCPSYQYEGV 498
+ S Q + V
Sbjct: 471 LRIPGQESQQGKAV 484
>gi|301046412|ref|ZP_07193572.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300301638|gb|EFJ58023.1| conserved hypothetical protein [Escherichia coli MS 185-1]
Length = 491
Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats.
Identities = 142/493 (28%), Positives = 223/493 (45%), Gaps = 26/493 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE GT L + PR WQ + + H
Sbjct: 7 SPE-EQLVEDIASFTYDPL---GYALYAFPWGEDGTELAHATGPRQWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKDWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+
Sbjct: 231 RWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFNSCKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ +L + + + V G++ IE K + + +S D L+ TFA
Sbjct: 409 LRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPV 467
Query: 481 PRSDMDFGRCPSY 493
+ G+
Sbjct: 468 SKRLRLPGQQNQQ 480
>gi|215487825|ref|YP_002330256.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|215265897|emb|CAS10306.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
Length = 493
Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats.
Identities = 137/498 (27%), Positives = 226/498 (45%), Gaps = 25/498 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE GT L + PR WQ + + H
Sbjct: 7 SPE-EQLVEDIASFTYDPL---GYALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKEWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD +V V G FP + FIP + + A+
Sbjct: 231 RWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPAV 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK-ISGL 363
R P +A +++G D + +G D V+ LR+G + L +W +T K I+
Sbjct: 291 GRVITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEWQRTTDDVLFAKIIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y+ DA+ ID G + G + + D E N+R E++ D
Sbjct: 351 EDQYQADAVFID-YGYGTGLKSVGDNWGRNWTLIQFGSGTADPEM-GNKRGEMYKSARDA 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L+ + ++ L L + + + ++ K + +S + +D + T+A
Sbjct: 409 LKLGAQLDSQNLADELSAPEYKVRLKDSRKILQDKEEVKELLGRSPNDADAYVLTYAAPV 468
Query: 481 PRSDMDFGRCPSYQYEGV 498
+ ++G+ S Q + +
Sbjct: 469 TKKQFNYGQQQSQQGKAL 486
>gi|262043569|ref|ZP_06016682.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039103|gb|EEW40261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 491
Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats.
Identities = 141/483 (29%), Positives = 219/483 (45%), Gaps = 26/483 (5%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+PE EQ + D+ L + L+ FPWGE GT L + PR WQ + + H
Sbjct: 7 SPE-EQLIDDIASFTHDPL---GYALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQ 62
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E
Sbjct: 63 NPATRHQPLML--ARASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQLRTKTWPE 120
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ KW +L K WF + +++ D H K + +SE + F G
Sbjct: 121 IIKWSNLAITKEWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGL 170
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F K
Sbjct: 171 HNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKH 230
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
WK QID+RTVEG + + + YG DSD +V V G FP FIP + +EA+
Sbjct: 231 RWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPTGLTDEAM 290
Query: 307 NR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
R +AP I+G D A G D+ V+ LR+G + L+ +K TD +I+
Sbjct: 291 KRVVTAVQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++Y DA+ ID G + G V + D + N+R E+ W
Sbjct: 351 EDQYLADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASADPQML-NKRGEMFNACKTW 408
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L+ ++ +L + + + V G++ +E K + + +S D L+ TFA
Sbjct: 409 LKLGGALDDQETADDLSAAE-YKVRVDGKIVMEPKEDIKERLGRSPGKGDALLLTFAYPV 467
Query: 481 PRS 483
+
Sbjct: 468 TKR 470
>gi|320175050|gb|EFW50163.1| terminase B protein, putative [Shigella dysenteriae CDC 74-1112]
Length = 480
Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats.
Identities = 138/486 (28%), Positives = 220/486 (45%), Gaps = 25/486 (5%)
Query: 15 LFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
+ D+ L + L+ FPWGE+GT L + PR WQ + + H N
Sbjct: 2 IEDIAGFTHDPL---GYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQ 58
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E+ KW +L
Sbjct: 59 PLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNL 116
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-M 193
K WF + +++ D H K + +SE + F G HN +
Sbjct: 117 AITKDWFTCTATAMYSN----DPGH------DKRWRADAIPWSEHNTEAFAGLHNERKRI 166
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
++ DEAS D++ G LT+ + W+ NP R +G+F E F K WK QI
Sbjct: 167 IVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQI 226
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPC 311
D+RTVEG + + + YG DSD ++ V G FP FIP + +EA+ R
Sbjct: 227 DSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAA 286
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPD 370
+AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+ ++Y+ D
Sbjct: 287 QVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQAD 346
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
A+ ID G + G V + D + N+R E+ + WL ++
Sbjct: 347 AVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQML-NKRGEMFISCKTWLRLGGML 404
Query: 431 NHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
+ +L + + + V G++ IE K + + +S D L+ TFA +
Sbjct: 405 DDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPVSKRLRIP 463
Query: 488 GRCPSY 493
G+
Sbjct: 464 GQQNQQ 469
>gi|304398406|ref|ZP_07380280.1| terminase, large subunit [Pantoea sp. aB]
gi|304354272|gb|EFM18645.1| terminase, large subunit [Pantoea sp. aB]
Length = 490
Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats.
Identities = 135/485 (27%), Positives = 215/485 (44%), Gaps = 24/485 (4%)
Query: 13 QKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNN 72
Q + D+ + L+ FPWGE+GT L PR WQ + + + AH N
Sbjct: 10 QLIEDIGAFTHDPF---GYALYAFPWGEEGTDLAYSKGPRQWQEDAFKQIGAHLQNPDTR 66
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132
P + A +G GIGK+ + LV W M T V+ AN+E QL+T W E++KW
Sbjct: 67 HQPLMIGRA--SGHGIGKSAFISMLVKWGMDTCEDCKVVVTANTENQLRTKTWPEIAKWQ 124
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L + WF + +++ +K + +SE + F G HN
Sbjct: 125 RLSITQDWFTCTATAIYSND----------PSHAKSWRADAIPWSENNTEAFAGLHNERK 174
Query: 193 -MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+ +I DEAS D++ G LT+ N W+ NP R +G+F E F K WK
Sbjct: 175 RIILIFDEASNIADLVWEVAEGALTDENTEIIWVAFGNPTRNTGRFRECFRKLRHRWKTA 234
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
QID+R+VEG + + + YG DSD +V V G FP FIP + + A+ R
Sbjct: 235 QIDSRSVEGTNKEQIQKWVDDYGEDSDFVKVRVRGLFPSASEAQFIPTGLTDAAVGRVIT 294
Query: 312 PDP--YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG-LVEKYR 368
P +A ++G D A +GGD V+ LR+G + L ++ +T KI ++YR
Sbjct: 295 PGQVAHAATVIGVDPAHQGGDPAVIYLRQGLHTKKLGEYQRTTDDVLFAKIVASFEDEYR 354
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
DA+ ID G + G + + + D + N+R E++ + WL+
Sbjct: 355 ADAVFID-YGYGTGLKSVGDNWGRNWQLIQFGGGSTDPQM-ANKRGEMYNAVKTWLKDGG 412
Query: 429 LINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDM 485
++ + + L + + + + +E K + + KS + +D L TFA +
Sbjct: 413 QLDSQQVAEELSAAEYKVRLKDSRIVLEDKTSIKERLGKSPNDADALALTFAFPVVKKLH 472
Query: 486 DFGRC 490
G
Sbjct: 473 YVGSN 477
>gi|303328395|ref|ZP_07358832.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
gi|302861389|gb|EFL84326.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
Length = 500
Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats.
Identities = 144/465 (30%), Positives = 206/465 (44%), Gaps = 26/465 (5%)
Query: 28 FSNFVLHFFPWGEKGTPLEGF-SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGR 86
FVL FPWG G L + P WQ E + + S V + A+S+G
Sbjct: 29 PLGFVLFAFPWG--GGALADYPDGPDVWQREILRGMGEQL--STGASAASVIREAVSSGH 84
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G+GK+ L AW++LW MST + AN+E QLK WAE++KW L +WF+ +
Sbjct: 85 GVGKSALVAWIILWAMSTFSDTRGVVTANTENQLKGKTWAELAKWHRLCLCGYWFDCTAT 144
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT-YGMAIINDEASGTPD 205
+L K + +SE + F G HN + +I DEAS PD
Sbjct: 145 ALIST----------QAGHEKTWRVDMVAWSERNTEAFAGLHNKGRRVLLIFDEASAIPD 194
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF 265
I G LT+ + W NP R +G+F E F + W ++D+RT D +
Sbjct: 195 AIWEVSEGALTDADTEIIWCCFGNPTRNTGRFRECFGRYAHRWNTRRVDSRTAAMTDKNQ 254
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY--APLIMGCD 323
+ YG DSD RV V G+FP+ FI +I+ EA R PD Y AP I+G D
Sbjct: 255 LAQWVEDYGEDSDFVRVRVRGEFPRAGDRQFISSDIVHEARGRSLKPDQYSFAPRILGVD 314
Query: 324 IAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
+A G D +V+ R+G + D T ++ ++ D I +D GA
Sbjct: 315 VARSGSDQSVITRRQGLACLEQRKFRGLDTVTLAGIVAEECREWGADKIFVDGIGVGAGV 374
Query: 384 CDYLEM---LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS-GLIQNL 439
D L LG+ V + A+ E NRR E+ M WL + L + L
Sbjct: 375 VDALRQVYGLGHLVVDAVAGATALQPERFLNRRAEMWTAMRKWLAEGGAVPDDAELAEQL 434
Query: 440 KSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPP 481
L+ + V +G+L +ESK + +G S D +D L TF P
Sbjct: 435 CGLE-YAVTVSGKLKLESKDDMKARGLTSPDCADALALTFYAPVP 478
>gi|167032754|ref|YP_001667985.1| putative phage terminase large subunit [Pseudomonas putida GB-1]
gi|166859242|gb|ABY97649.1| putative phage terminase, large subunit [Pseudomonas putida GB-1]
Length = 499
Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats.
Identities = 143/491 (29%), Positives = 225/491 (45%), Gaps = 27/491 (5%)
Query: 8 NPETEQKLF-DLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHC 66
+ EQ+L D+ + L +VL+ FPWGE G L + PR WQ E +E +
Sbjct: 7 EIDYEQELANDIASFSDDPL---GYVLYAFPWGEAGGELANKTGPRKWQREVLESIGEQL 63
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
+ EV + A+++G GIGK+ L +W++ W + T + AN+E+QL+T W
Sbjct: 64 RAGAKDRG-EVIREAVASGHGIGKSALVSWVIKWALDTEVDTRGVVTANTESQLRTKTWP 122
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
EV+KW L HWF++ +L D H K++ +S+ + F G
Sbjct: 123 EVAKWNRLSITAHWFKLTGTALIST----DPDH------EKNWRIDAVPWSDTNTEAFAG 172
Query: 187 HHNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
HN + +I DEAS D++ G LT+ + W NP R SG+F E F K
Sbjct: 173 LHNEGKRILLIFDEASAIADLVWEVAEGALTDADTEIIWAAFGNPTRNSGRFRECFTKFK 232
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
W+ Q+D+RTV+G + + IA YG DSD R+ V G FP+ IP + + EA
Sbjct: 233 HRWRHRQVDSRTVDGTNKTQIAKWIADYGEDSDFVRIRVRGMFPRASDLQLIPTDWVAEA 292
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE--HLFDWSKTDLRTTN---NKI 360
+ R+ L+ G DIA G DN V+ RRG + ++ R T K+
Sbjct: 293 MRRDGVYGLDDALVCGIDIARGGMDNNVIRFRRGMDAKSIKPIKIPGSETRNTTPFIAKV 352
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEML--GYHVYRVLGQKRAVDLEFCRNRRTELHV 418
LV ++RPDA+ +D+ G D L L G + V +A D N RT +
Sbjct: 353 CTLVVEHRPDAVFVDSTGVGGPVADQLRRLLPGVMIIDVNFASQAPD-RHYANMRTYIWW 411
Query: 419 KMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYT 475
+M + ++ I ++ + + ++ ++A+E K + + S D D L T
Sbjct: 412 RMREAIKLGLAIESDTELETELTSPEYDHNSSDQIALEKKKDIKKRLGISPDDGDALALT 471
Query: 476 FAENPPRSDMD 486
F ++
Sbjct: 472 FTMPVMKAQYQ 482
>gi|228911519|ref|ZP_04075310.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
200]
gi|228848128|gb|EEM92991.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
200]
Length = 459
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 132/494 (26%), Positives = 216/494 (43%), Gaps = 75/494 (15%)
Query: 14 KLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
++ D+ W D + +F+ +L F+ P WQ + + ++ +P
Sbjct: 2 EIIDVYWDDPV--AFAEDMLGFY--------------PDEWQRKVL-------MDLAQSP 38
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
K ++ +G+G+GKT L + +V+W + RP VIC A ++ QL T LWAE++KWL
Sbjct: 39 -----KVSVRSGQGVGKTGLESVVVIWFLCCRPNPKVICTAPTKEQLFTVLWAEIAKWLE 93
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
K+ + ++ + + RT + +P+ G H Y M
Sbjct: 94 GSAVKNLLKWTKTRVYMIG------------SEERWFATARTAT--KPENMQGFHEDY-M 138
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ DEASG D I ILG L+ A + NP R SG FY+ N+ D +K ++
Sbjct: 139 LFVCDEASGIADPIMEAILGTLS--GAENKLFLCGNPTRTSGVFYDSHNRDRDLYKIHKV 196
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ E + +YG SDV RV V G+FP+ + D+FIPL I+E+A + + P
Sbjct: 197 SSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPKAEADAFIPLEIVEQAASCKVEPT 256
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA-- 371
L +G D+A G D TV+ R G + L + K D T + L ++Y
Sbjct: 257 -GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYKQDTMETAGHVLKLAKEYMAKYKQ 315
Query: 372 -----IIIDANNTGARTCDYL------EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
I +D + G D L E L + VY V+ + +D E N E +
Sbjct: 316 LKRVDIKVDDSGVGGGVTDRLKEVIKSERLPFKVYPVVNNGKPLDDEHYDNAGAEGWAVV 375
Query: 421 ADWLE------------FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
D LE + N +I S K + + + G++A+E K + +G +S
Sbjct: 376 RDLLEENMKAFIQGEEPTMEIPNDEKMISQFSSRK-YRITSRGKIALERKEEMKKRGLQS 434
Query: 466 TDYSDGLMYTFAEN 479
D +D ++ F +
Sbjct: 435 PDRADAIVLAFYKP 448
>gi|228968731|ref|ZP_04129698.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790961|gb|EEM38595.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 459
Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats.
Identities = 133/494 (26%), Positives = 217/494 (43%), Gaps = 75/494 (15%)
Query: 14 KLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
++ D+ W D + +F+ +L F+ P WQ + + ++ +P
Sbjct: 2 EIIDVYWDDPV--AFAEDMLGFY--------------PDEWQRKVL-------MDLAQSP 38
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
K ++ +G+G+GKT L + +V+W + RP VIC A ++ QL T LWAE++KWL
Sbjct: 39 -----KVSVRSGQGVGKTGLESVVVIWFLCCRPNPKVICTAPTKEQLFTVLWAEIAKWLE 93
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
K+ + ++ + + RT + +P+ G H Y M
Sbjct: 94 GSAVKNLLKWTKTRVYMIG------------SEERWFATARTAT--KPENMQGFHEDY-M 138
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ DEASG D I ILG L+ A + NP R SG FY+ N+ D +K ++
Sbjct: 139 LFVCDEASGIADPIMEAILGTLS--GAENKLFLCGNPTRTSGVFYDSHNRDRDLYKIHKV 196
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ E + +YG SDV RV V G+FP+ + D+FIPL I+E+A + + P
Sbjct: 197 SSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPKAEADAFIPLEIVEQAASCKVEPT 256
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA-- 371
L +G D+A G D TV+ R G + L + K D T + L ++Y
Sbjct: 257 -GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYKQDTMETAGHVLKLAKEYMAKYKQ 315
Query: 372 -----IIIDANNTGARTCDYL------EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
I +D + G D L E L + VY V+ + +D E N TE +
Sbjct: 316 LKRVDIKVDDSGVGGGVTDRLKEVIKSERLPFKVYPVVNNGKPLDDEHYDNAGTEGWAVV 375
Query: 421 ADWLE------------FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
D LE + N +I S K + + + G++A+E K + +G +S
Sbjct: 376 RDLLEENMKAFIQGEEPTMEIPNDEKMISQFSSRK-YRITSRGKIALERKEEMKKRGLQS 434
Query: 466 TDYSDGLMYTFAEN 479
D +D ++ F +
Sbjct: 435 PDRADAIVLAFYKP 448
>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040864|gb|ACT57660.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 252/359 (70%), Positives = 299/359 (83%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M R + T+ + EQ+L +++ E LSF NFV+ FFPWG KG PLE FS P WQLEFME
Sbjct: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L S+GIDSKHY+ CRTYSEER
Sbjct: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVG HNT+GMA+ NDEASGTPD+IN ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FN PL+DWKR+QIDTRTVEGID FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP N
Sbjct: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
IEEA++RE D YAPLIMGCDIA EGGD TVVV RRG +IEH+FDWS ++ TN +
Sbjct: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQETNQE 359
>gi|150390341|ref|YP_001320390.1| hypothetical protein Amet_2579 [Alkaliphilus metalliredigens QYMF]
gi|149950203|gb|ABR48731.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
Length = 469
Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats.
Identities = 131/494 (26%), Positives = 202/494 (40%), Gaps = 74/494 (14%)
Query: 14 KLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
L D W + + F+ +L F+ P WQ + + + H
Sbjct: 7 ALLDNYWDNPVW--FAEDMLGFY--------------PDPWQAKVLMDLAQH-------- 42
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
K ++ +G+G+GKT L + + W + TRP VI A + QL LWAE+SKWLS
Sbjct: 43 ----PKVSVRSGQGVGKTGLESIAITWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLS 98
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
++ + + + RT RP+ G H Y M
Sbjct: 99 KSKVDKLLRWTKTKIYMNGF------------EERWWATARTAV--RPENMQGFHEDY-M 143
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ DEASG D I ILG LT ++ NP + SG FY+ N+ D +K ++
Sbjct: 144 LFVVDEASGVADPIMEAILGTLTGY--ENKLLLCGNPTKTSGTFYDSHNRDRDTYKSHKV 201
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ E + +YG DSDV RV V G FP+ + DS I L + E+A
Sbjct: 202 SSMDSPRTSKENIEMLKKKYGADSDVFRVRVLGDFPKGEADSLISLEVTEQAAETVVDIS 261
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP---- 369
L +G DIA G D T++ R G + L +SK D T I V++ +
Sbjct: 262 NAYTLNIGADIARFGDDKTIIAPRIGNRVLDLQQYSKKDTMETAGNILRTVDRLKTQHLQ 321
Query: 370 ---DAIIIDANNTGARTCDYLEM------LGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
I ID + G D L LGY + + +A D E N+ E+ +
Sbjct: 322 INKIVIKIDDDGLGGGVTDRLREINRQQSLGYIIVPIKNGSKADDPEHYYNKAAEMWDNI 381
Query: 421 ADWLEF------------ASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
+ L+ L LI+ L + K + V + G + +ESK + + +S
Sbjct: 382 RELLDENLSKFLQGEPGVIQLPKDDILIKQLSNRK-YKVDSKGRIELESKDEMKRRIGES 440
Query: 466 TDYSDGLMYTFAEN 479
D +D ++Y+FA +
Sbjct: 441 PDRADAVIYSFASD 454
>gi|282848875|ref|ZP_06258265.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|282581380|gb|EFB86773.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
Length = 483
Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats.
Identities = 134/483 (27%), Positives = 217/483 (44%), Gaps = 27/483 (5%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNS 69
+ ++ + L L+F V +PWGE GTPLE P WQ++ ++ +
Sbjct: 3 KHDELIEALGALTHDPLAF---VYFAYPWGEPGTPLENMEGPDEWQIQILKDIGEQLKKG 59
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
+ + A+++G GIGK+ L +WL+ + +ST + AN+E QL+T W E+S
Sbjct: 60 KDLQT--AIQEAVASGHGIGKSALISWLIHFAISTHENTRGVVTANTEGQLRTKTWPELS 117
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
KW ++ K F + ++ + K + +S+ P++F G HN
Sbjct: 118 KWHNMFIAKDLFTYTATAIFSSD----------KDYEKTWRIDAIPWSKNSPESFAGLHN 167
Query: 190 TYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ ++ DEAS DVI G LT+ N W NP R SG+F E F K W
Sbjct: 168 QGNRILVLFDEASAIDDVIWEVTEGALTDANTEIIWCAFGNPTRNSGRFRECFRKYRKFW 227
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
+QID+RTV+ + + E + YG DSD +V V G FP FI I ++A +
Sbjct: 228 NTYQIDSRTVKISNKTKIEEWLEAYGEDSDFFKVRVRGVFPSASDLQFISTEIADKAQKQ 287
Query: 309 EPCPDP--YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR-TTNNKISGLVE 365
P + P+I+G D A G D+ +V+R+G ++ L K D I+ +
Sbjct: 288 VYKPGQFEHLPVIIGVDPAWTGSDSLEIVMRQGYYMKSLASIPKNDDDWRMAQLIAQFED 347
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
+Y+ DA+ ID G + LG + ++ D N R + +M +WL
Sbjct: 348 EYKADAVFIDM-GYGTGIYSIGKQLGRKWRLIEFGGKSNDP-VYLNMRAYMWGQMKEWLR 405
Query: 426 FASLI--NHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
I N L ++ ++ I+ G + +ESK + +G S + D L TFA
Sbjct: 406 EGGSIPPNDQALYDDIVGPEA-IIDKNGRIQLESKKDMKDRGLPSPNKGDALALTFAARV 464
Query: 481 PRS 483
+
Sbjct: 465 VKK 467
>gi|150016512|ref|YP_001308766.1| hypothetical protein Cbei_1636 [Clostridium beijerinckii NCIMB
8052]
gi|149902977|gb|ABR33810.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
8052]
Length = 470
Score = 438 bits (1125), Expect = e-120, Method: Composition-based stats.
Identities = 129/462 (27%), Positives = 201/462 (43%), Gaps = 47/462 (10%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
+ P + + M + V + K ++ +G+G+GKT L + +V W + TRP
Sbjct: 12 YWDNPVWFAEDMMNFHADKWQSEVLMALAQSPKVSVRSGQGVGKTGLESIVVTWYLCTRP 71
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
VI A + QL LWAE+SKWL+ ++ E ++ + S
Sbjct: 72 FPKVIATAPTRQQLYDVLWAEISKWLASSKIENLLEWTKTKIYMKGY------------S 119
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ + +T + RP+ G H Y M + DEASG D I ILG LT +M
Sbjct: 120 ERWWATAKTAT--RPENMQGFHEDY-MLFVVDEASGVADPIMEAILGTLTGY--ENKLLM 174
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
NP R SG FY+ N+ D +K F++ + E + +Y SDV RV V G
Sbjct: 175 CGNPTRTSGTFYDSHNRDRDLYKTFKVSSLESPRTSKDNIEMLKRKYHEGSDVWRVRVEG 234
Query: 287 QFPQQDIDSFIPLNIIEEA-LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL 345
+FP+ + DS I L E A + + L +G DIA G D +V+ R G + L
Sbjct: 235 EFPKGESDSLISLEYAETATITKINNIHNNFTLHIGADIARFGNDESVIAPRIGNKVFDL 294
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPD-------AIIIDANNTGARTCDYLEM------LGY 392
++K D T I +K++ + I +D + G D L LGY
Sbjct: 295 LTYTKKDTMETTGNILRATDKFKNEYKHINKVKIRVDDDGLGGGVTDRLREVIRQEGLGY 354
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE------------FASLINHSGLIQNLK 440
V + +A D E ++ E+ M D LE L N+ LI+ L
Sbjct: 355 EVMPIKNGSKANDEEHYSDKSAEMWGNMRDILEENFTNFVQGKEPTIELPNNDKLIKQLS 414
Query: 441 SLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
+ K F + + G + +E K + + +S D +D ++Y+FAEN
Sbjct: 415 NRK-FRIDSKGRIDLEKKEEMKKRIGESPDLADAVIYSFAEN 455
>gi|209901239|ref|YP_002290878.1| putative terminase B [Clostridium phage phiCD27]
gi|199612120|gb|ACH91293.1| putative terminase B [Clostridium phage phiCD27]
Length = 469
Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats.
Identities = 134/493 (27%), Positives = 210/493 (42%), Gaps = 74/493 (15%)
Query: 15 LFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
L D W + + F+ +L+F WQ + + +
Sbjct: 8 LLDCYWDNPVW--FAEDMLNF--------------KADKWQSDVLMAL------------ 39
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
+ K +I +G+G+GKT L + +W +STRP V+ A + QL LWAE++KWLS
Sbjct: 40 AQTPKVSIRSGQGVGKTGLESIATVWYLSTRPFPKVVATAPTRQQLYDVLWAEIAKWLSN 99
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ E ++ + + + RT +P+ G H Y M
Sbjct: 100 SKVEKLLEWTKTKVYMKGF------------EERWWATARTAV--KPENMQGFHEDY-ML 144
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
+ DEASG D I ILG L+ A ++ NP R SG FY+ N+ D +K F++
Sbjct: 145 FVVDEASGVADPIMEAILGTLS--GAENKLLLCGNPTRTSGTFYDSHNRDRDLYKTFKVS 202
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ E + +Y SD RV V G+FP+ + DS I L +E + RE
Sbjct: 203 SLDSPRTSKDNIEMLKRKYHEGSDPWRVRVLGEFPKGESDSLISLEAVETSTIREVNISN 262
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP----- 369
L +G DIA G D T++ R G + L +SK D T I V+K++
Sbjct: 263 DYILNIGADIARYGDDETIIAPRIGGKVFDLLTYSKKDTMETVGNILRAVDKFKNMYHQI 322
Query: 370 --DAIIIDANNTGARTCDYL------EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
I D + GA D L E L Y V + A++ + N+ +E+ M
Sbjct: 323 NRVKIKTDDDGLGAGVTDRLKEVIRHERLKYEVIPIQNGSSAIEKDKYYNKASEMWDNMR 382
Query: 422 DWLE------------FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKST 466
+ L+ L N LI+ L + K + V + G++ IESK + + +S
Sbjct: 383 EELDANLSSFIQNKEAIIQLPNDDKLIKQLSNRK-YTVDSKGKIQIESKKEMKKRIGESP 441
Query: 467 DYSDGLMYTFAEN 479
D +D ++Y+FAEN
Sbjct: 442 DRADAVIYSFAEN 454
>gi|290968649|ref|ZP_06560187.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
gi|290781302|gb|EFD93892.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
Length = 487
Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats.
Identities = 142/486 (29%), Positives = 232/486 (47%), Gaps = 37/486 (7%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ E Q L L FV F W + L+G P++WQ++ ++ V
Sbjct: 5 DIELLQALGSLASDP------VAFVYFAFDWDSE--ELKG-QNPQTWQIKTLKEVGEGL- 54
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
+ A ++G GIGK+ L AWL+LW +STRP + AN+ TQL+T WAE
Sbjct: 55 -----SLSTALQHATASGHGIGKSALVAWLILWAISTRPDTRGVVTANTATQLETKTWAE 109
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+SKW L K +F + S ++ C + + +S +R ++F G
Sbjct: 110 LSKWYHLFRGKKFFTLTSTAI----------FCRQEGHERTWRIDAIPWSVDRTESFAGL 159
Query: 188 HNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
HN + +I DEAS + I G LT+++ W++ NP R +G+F++ F+K
Sbjct: 160 HNQGNRLLLIFDEASAIDNKIWEVAEGALTDKDTEILWLVFGNPTRSTGRFFDCFHKYKK 219
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
W +ID+RTV+ + + + I YG+DSD +V V G+FP FI I+ A
Sbjct: 220 SWITQKIDSRTVDISNKTQLQKWIQTYGIDSDFVKVRVLGEFPDTSDTQFISTAIVRTAW 279
Query: 307 NREP---CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR-TTNNKISG 362
R P +AP I+G D A GGD+TV+ LR+G E L ++ + D +++
Sbjct: 280 ERRPLRTAEYDFAPCIIGMDPAWTGGDSTVIFLRQGFFSEKLAEYKQNDNDGVMAARLAE 339
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
+KY DA+ ID G + +G V +++ + N+R E+ M +
Sbjct: 340 FEDKYHADAVFID-KGYGTGIYSFGVTMGRQWRLVSFAEKS-GAQAYANKRAEMWGNMKE 397
Query: 423 WLEFASLINH-SGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAE 478
WL+ +I GLI+ L + ++F + GE+ +E K + +G +S + +D L TFA
Sbjct: 398 WLQEGGVIPQVDGLIEELTAPQAF-INARGEIQLEKKEDMKKRGIESPNMADALALTFAY 456
Query: 479 NPPRSD 484
+ +
Sbjct: 457 PVLQRN 462
>gi|282598712|ref|YP_003358792.1| putative phage terminase B protein [Enterococcus phage phiEf11]
gi|300860603|ref|ZP_07106690.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|307292389|ref|ZP_07572245.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
TX0411]
gi|258598082|gb|ACV83339.1| putative phage terminase B protein [Enterococcus phage phiEf11]
gi|300849642|gb|EFK77392.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|306496518|gb|EFM66079.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
TX0411]
gi|315146097|gb|EFT90113.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
Length = 484
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 122/490 (24%), Positives = 216/490 (44%), Gaps = 51/490 (10%)
Query: 33 LHFFPWGEKGTPLEGF-SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
F P+ + G ++ + P ++ + + + + V + + K ++ +G+G+GKT
Sbjct: 3 KEFIPFADIGAAIDYYYDKPVAFCQDILHLDPDEWQDKVLDDLAKFPKVSVRSGQGVGKT 62
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA 151
L A +LW ++ RP VI A + QL LWAEV+KWL+ K + ++
Sbjct: 63 ALEAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNNSLIKDLLKWTKTKIYMV 122
Query: 152 PWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGI 211
DS+ + RT + +P+ G H + M I+ DEASG D I I
Sbjct: 123 G------------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVADPIMEAI 167
Query: 212 LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA 271
LG L+ + +M NP + G FY+ N D ++ ++ + + + + +I
Sbjct: 168 LGTLSGFD--NKLLMCGNPNNIEGVFYDSHNTDRDKYRTHKVSSYDSKRTNKENIQMLID 225
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL---IMGCDIAEEG 328
+YG +SDV RV + G+FP+ +DSFI L I+E A + + +G D+A G
Sbjct: 226 KYGENSDVARVRIYGEFPKGALDSFISLEIVEFAKDINISDSELKHVREGHIGVDVARFG 285
Query: 329 GDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI----SGLVEKYRPDA---IIIDANNTGA 381
D+T+V R G +SK D T ++ +++ Y I +D G
Sbjct: 286 DDSTIVFPRIGAKALPFEKYSKQDTMQTTGRVLKAAKRMMDDYPTIKKVFIKVDDTGVGG 345
Query: 382 RTCDYLEM------LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE---------- 425
D L+ L Y V V + + D ++ N+ T++ + + LE
Sbjct: 346 GVTDRLKEVISDEKLPYEVIPVNNGESSTD-DYYANKGTQIWGDVKELLEQNISNSINGQ 404
Query: 426 --FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L +++ LI+ L + K F + + G++ +ESK + + S D +D L F E
Sbjct: 405 GPTIELPDNANLIKELSTRK-FKMTSNGKIRLESKEDMKKRNVGSPDIADALTLAFYEPF 463
Query: 481 PRSDMDFGRC 490
++ +
Sbjct: 464 RPEPINVKKA 473
>gi|257883493|ref|ZP_05663146.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|294614775|ref|ZP_06694675.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
gi|294622490|ref|ZP_06701512.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|257819151|gb|EEV46479.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|291592387|gb|EFF23996.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
gi|291598037|gb|EFF29147.1| conserved hypothetical protein [Enterococcus faecium U0317]
Length = 471
Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats.
Identities = 125/484 (25%), Positives = 208/484 (42%), Gaps = 51/484 (10%)
Query: 34 HFFPWGEKGTPLEGF-SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT 92
F P+ + G+ ++ + P ++ + + + +V N E K ++ +G+G+GKT
Sbjct: 4 EFIPFADIGSAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTA 63
Query: 93 LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP 152
L A +LW ++ RP VI A + QL LWAEV+KWL+ K+ + ++
Sbjct: 64 LEAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG 123
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
DS+ + RT + +P+ G H + M I+ DEASG D I IL
Sbjct: 124 ------------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAIL 168
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
G L+ + +M NP + G FY+ N D ++ ++ + + + E I+ +
Sbjct: 169 GTLSGFD--NKLLMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKK 226
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD---PYAPLIMGCDIAEEGG 329
YG +SDV RV + G+FP+ +DSFI L +E A ++ +G D+A G
Sbjct: 227 YGKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGD 286
Query: 330 DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS----GLVEKYRPD---AIIIDANNTGAR 382
D+T++ R +SK T + L+ +Y I +D G
Sbjct: 287 DSTILFPRIATRALEYEKYSKRSTMETTGYVINMAKNLMSQYPSIDKVMIKVDDTGVGGG 346
Query: 383 TCDYLEML------GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF---------- 426
D LE L + V+ V + D +F N T+L + + LE
Sbjct: 347 VTDRLEELIEDKHYPFEVFGVNNGSTSED-DFYDNLGTQLWGNIKEMLEENMTANLNGEQ 405
Query: 427 --ASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPP 481
L + S LI+ L + K F + + + +ESK + + S D +D L F E P
Sbjct: 406 PVIELPSDSSLIKELSTRK-FKMTSRSRIRLESKDDMKKRNIGSPDIADALALAFYEPPS 464
Query: 482 RSDM 485
Sbjct: 465 HYQF 468
>gi|261208032|ref|ZP_05922709.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289567088|ref|ZP_06447483.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|260077749|gb|EEW65463.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289161103|gb|EFD09008.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
Length = 471
Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats.
Identities = 125/484 (25%), Positives = 207/484 (42%), Gaps = 51/484 (10%)
Query: 34 HFFPWGEKGTPLEGF-SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT 92
F P+ + G ++ + P ++ + + + +V N E K ++ +G+G+GKT
Sbjct: 4 EFIPFADIGAAIDYYYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTA 63
Query: 93 LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP 152
L A +LW ++ RP VI A + QL LWAEV+KWL+ K+ + ++
Sbjct: 64 LEAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG 123
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
DS+ + RT + +P+ G H + M I+ DEASG D I IL
Sbjct: 124 ------------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAIL 168
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
G L+ + +M NP + G FY+ N D ++ ++ + + + E I+ +
Sbjct: 169 GTLSGFD--NKLLMCGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKK 226
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD---PYAPLIMGCDIAEEGG 329
YG +SDV RV + G+FP+ +DSFI L +E A ++ +G D+A G
Sbjct: 227 YGKESDVARVRIFGEFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGD 286
Query: 330 DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS----GLVEKYRPD---AIIIDANNTGAR 382
D+T++ R +SK T + L+ +Y I +D G
Sbjct: 287 DSTILFPRIATRALEYEKYSKRSTMETTGYVINMAKNLMSQYPSIDKVMIKVDDTGVGGG 346
Query: 383 TCDYLEML------GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF---------- 426
D LE L + V+ V + D +F N T+L + + LE
Sbjct: 347 VTDRLEELIEDKHYPFEVFGVNNGSTSED-DFYDNLGTQLWGNIKEMLEENMTANLNGEQ 405
Query: 427 --ASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPP 481
L + S LI+ L + K F + + + +ESK + + S D +D L F E P
Sbjct: 406 PVIELPSDSSLIKELSTRK-FKMTSRSRIRLESKDDMKKRNIGSPDIADALALAFYEPPS 464
Query: 482 RSDM 485
Sbjct: 465 HYQF 468
>gi|228950291|ref|ZP_04112468.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228809453|gb|EEM55897.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 495
Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats.
Identities = 121/505 (23%), Positives = 200/505 (39%), Gaps = 83/505 (16%)
Query: 13 QKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNN 72
+L ++ D + +F +L P WQ E + + H
Sbjct: 19 TQLLEIYVDDPV--AFVEDILEV--------------EPDPWQKEVLNDIANHSH----- 57
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132
++ +G+G+GKT + +W+ +W + RP +IC A ++ QL LWAE++KWL
Sbjct: 58 -------VSVRSGQGVGKTAMESWICIWFLCCRPYPKIICTAPTKQQLYDVLWAEIAKWL 110
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ K + ++ + + +T + RP+ G H Y
Sbjct: 111 NSSQVKDLLKWTKTKIYMKGF------------EDRWFATAKTAT--RPENMQGFHEDY- 155
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
M I DEASG D I ILG L+ + M NP + SG F++ NK +K +
Sbjct: 156 MLFIADEASGIADDIMEAILGTLS--GSENKLFMCGNPTKTSGVFFDSHNKDRALYKSHK 213
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP-- 310
+ + E + +YG SDV RV V G+FP+ + D+FI L E A RE
Sbjct: 214 VSSADSPRTSKKNIEMLKKKYGEGSDVYRVRVEGEFPRGEADAFISLETAEAARMREVYK 273
Query: 311 ---------------CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT 355
A + +GCD+A G D T++ RRG + L + D
Sbjct: 274 VEVIENEEEESTVKEIIPDTAVVEIGCDVARFGSDETIIATRRGWKVLPLQVHHQRDTMY 333
Query: 356 TNNKISGLVEKY--------RPDAIIIDANNTGARTCDYLEM------LGYHVYRVLGQK 401
+ + +KY + I ID G D L+ V +
Sbjct: 334 VSGLLVQEAKKYFSWCERTGKRIPIRIDDTGVGGGVTDRLKEVVAENDYPIDVIPINFAS 393
Query: 402 RAVDLEFCRNRRTELHVKMAD-WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK-- 458
+ + ++ D LEF +L + LI L S++ + + + G + IE K
Sbjct: 394 K--GNAEYACIVSVMYGHFKDNCLEFVALPDDEDLIAQL-SVRKYQINSDGRIKIEPKKA 450
Query: 459 -RVKGAKSTDYSDGLMYTFAENPPR 482
+ +G KS D ++ ++ FA P+
Sbjct: 451 MKDRGLKSPDRAEAVVMAFAPFYPK 475
>gi|332981151|ref|YP_004462592.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
gi|332698829|gb|AEE95770.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
Length = 461
Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats.
Identities = 133/448 (29%), Positives = 198/448 (44%), Gaps = 50/448 (11%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
+ P WQ E ++ + + + A+ +G G+GKT L AW +LW + TRP
Sbjct: 25 AEPDDWQAETLQALADN------------PRVAVRSGHGVGKTALEAWALLWFLFTRPYP 72
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ C A + QL LWAE SKWL P K +FE Q +
Sbjct: 73 KIPCTAPTREQLHDILWAEASKWLERAPALKPYFEWQKTRI------------VQKQYPG 120
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ RT +P+ G H + + I DEASG D I I G LT +A +M
Sbjct: 121 RWFATART--SNKPENMAGFHEEH-LLFIIDEASGIADNIFETIEGALTTSDAK--LLMC 175
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
NP + SG F++ F K + ++ + + + E + +Y DSDV RV V G+
Sbjct: 176 GNPTKNSGVFHDAFFKDRSLYWTRKVSCLDSQRVTLEYAERLKRKYHEDSDVYRVRVLGE 235
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
FP+ + D+FI L+I+E A R+ PD L +G D+A G D TV+ R G + +L
Sbjct: 236 FPKAEPDTFISLDIVEAATMRDVEPD--GVLEIGVDVARFGDDETVLAARAGLKLVYLKA 293
Query: 348 WSKTDLRTTNNKISGLVEKY-----RPD-AIIIDANNTGARTCDYLEM------LGYHVY 395
++K D TT L + +P I ID + G D L V
Sbjct: 294 YTKQDTMTTAGYAIALAKDLMKECGKPKCTIKIDDDGVGGGVTDRCREVVREEKLYIDVI 353
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWL--EFASLINHSGLIQNLKSLKSFIVPNTGEL 453
D E N TE + D L E A LIN LI L + K + + + G++
Sbjct: 354 DCHNGGAPEDKEHYENWGTEAWAYLRDLLQDEQAELINDEDLIGQLTTRK-YRITSKGKI 412
Query: 454 AIESK---RVKGAKSTDYSDGLMYTFAE 478
A+ESK + +G S D +D ++ +A+
Sbjct: 413 ALESKDEMKRRGLMSPDRADAVVLAYAK 440
>gi|308069786|ref|YP_003871391.1| hypothetical protein PPE_03030 [Paenibacillus polymyxa E681]
gi|305859065|gb|ADM70853.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 452
Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats.
Identities = 124/456 (27%), Positives = 186/456 (40%), Gaps = 58/456 (12%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ + ++ NNP + ++ +G+G+GKT L A LW +S P V
Sbjct: 6 PDDWQASTL-------MDLANNP-----RVSVRSGQGVGKTGLEAATALWFLSCFPYPKV 53
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
IC A + QL LWAE++KW S P + W ++ + +
Sbjct: 54 ICTAPTRQQLHDVLWAEINKWQSKSP---------VLKRILKWTKTKIYM--KNYEERWF 102
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
RT + +P+ G H Y M I DEASG D I ILG L+ +M NP
Sbjct: 103 ATARTAT--KPENMQGLHEDY-MLFIVDEASGVADPIMEAILGTLSGE--FNKILMCGNP 157
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ SG FY+ NK D+K ++ + +YG SDV RV V G+FP+
Sbjct: 158 TKTSGVFYDSHNKDRADYKTRKVSCLDSPRTSKDNIAMLKRKYGEGSDVWRVRVEGEFPR 217
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK 350
D+FI L + E A L +G D+A G D T + GP I K
Sbjct: 218 GGSDTFISLEVAEFAAKEVKLEPTGDMLTIGVDVARFGDDETSMFAGIGPRIVGEHHHFK 277
Query: 351 TDLRTTNNKISGLVEKYR-------PDAIIIDANNTGARTCDYL------EMLGYHVYRV 397
T + L ++ + I +D + G D L E L Y + +
Sbjct: 278 KGTMVTAGWVINLAKELQVAHPYLNRIRIRVDDSGVGGGVTDRLSEIVAEEGLPYEIIPI 337
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLE------------FASLINHSGLIQNLKSLKSF 445
++D E N TE+ + + LE L + LI L + K +
Sbjct: 338 NNGSSSLD-EHYGNLVTEMWASIKEQLEQNMSNFMNGDSSILQLPDDDVLITQLTARK-W 395
Query: 446 IVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAE 478
+ + G++ +ESK + +G KS D +D + TF E
Sbjct: 396 NMTSKGKMLLESKKDMKKRGLKSPDRADAFVLTFGE 431
>gi|54302246|ref|YP_132239.1| terminase large subunit [Photobacterium profundum SS9]
gi|46915667|emb|CAG22439.1| hypothetical protein PBPRB0566 [Photobacterium profundum SS9]
Length = 513
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 132/515 (25%), Positives = 213/515 (41%), Gaps = 42/515 (8%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEK------------GTPLEGF 48
M+++ N E Q D+ + L FV++ +PW + +
Sbjct: 1 MAKKEEINYEH-QLAIDIGGFYDDPL---GFVMYAYPWDTDPDLQIVKLPEPWASKYDSV 56
Query: 49 SAPRSWQLE----FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
P +W E EV+ + N V+ + F +IS+G GIGK+ ++WL+ ++MST
Sbjct: 57 YGPDAWFCEMCDQLQEVIRKNDFNGVDPV--DAFLYSISSGHGIGKSCASSWLIHFVMST 114
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
RP + +N+ QL+T W E+ KW L NKHWF + + ++ D
Sbjct: 115 RPNSKGVVTSNTSEQLRTKTWGELGKWTKKLINKHWFVYNNGKGNMNFYHKDY------- 167
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAI-INDEASGTPDVINLGILGFLTERNANRF 223
++ + +T EE ++F G H + DEAS PD I G LT+ F
Sbjct: 168 -AETWRVDAQTCREENSESFAGLHCASSTPWYLFDEASAVPDKIWEVAEGGLTDGEP--F 224
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
W + NP R SG+F E + + W R QID+ TV+ + + YG DSD RV
Sbjct: 225 WFVFGNPTRNSGRFRECWRRFRQRWNRKQIDSSTVQVTNKKKISEWESDYGEDSDFYRVR 284
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG--PV 341
V G FP + I ++E A++R P +P +M D+A GGDN V R G
Sbjct: 285 VKGVFPSASSNQKISGALLEAAMSRTAHVIPGSPRVMSLDVARGGGDNCVFRFRHGLNGG 344
Query: 342 IEHLFDWSKT---DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ + D L +++PDA ID G D + LG++ +
Sbjct: 345 VRKKVTLPGSEYRDSMKLAAMAVQLCSEFKPDAFFIDETGVGGPVGDRIRQLGFNCIGIN 404
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLIN-HSGLIQNLKSLKSFIVPNTGELAIES 457
+A D N R ++ + +WL+ ++ GL+ + +++ E+ I
Sbjct: 405 FASKAPDP-HYANMRAYMYHQWGEWLKAGGSLHYDEGLLTEVGAIEYTHDRKDREILIPK 463
Query: 458 K--RVKGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
+ STD D A +
Sbjct: 464 DVIKKAIGISTDDGDACALLHAYPVAPRQQGYNSA 498
>gi|323486060|ref|ZP_08091391.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
WAL-14163]
gi|323400627|gb|EGA92994.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
WAL-14163]
Length = 476
Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats.
Identities = 125/473 (26%), Positives = 193/473 (40%), Gaps = 51/473 (10%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
P + E + E K AI +G+G+GKT + A +LW + P
Sbjct: 20 YRKNPVLFAQEVLLFEPDDWQKQALMDLAESPKVAIKSGQGVGKTGMEAVALLWFLCCYP 79
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
++ A ++ QL LW+EVSKW+S P L W ++
Sbjct: 80 YPRIVATAPTKQQLHDVLWSEVSKWMSKSP---------LLSDILKWTKTYIYMVGN--E 128
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
K + + RT + +P+ G H M I DEASG D I ILG L+ AN +M
Sbjct: 129 KRWFAVARTAT--KPENMQGFHED-NMLFIVDEASGVADPIMEAILGTLS--GANNKLLM 183
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
NP R SG FY+ FN ++ + + + + E +I +YG DS+V V V G
Sbjct: 184 CGNPTRTSGTFYDAFNVDRSIYRCHTVSSADSKRTNKQNIESLIRKYGKDSNVVLVRVFG 243
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL 345
+FP+Q+ D FI L+I+E + D P + G D+A G D TV+ G I
Sbjct: 244 EFPKQEDDVFIALSIVEHCCMLDLPDDVPIKRISFGVDVARYGSDETVIAKNVGGRITLP 303
Query: 346 FDWSKTDLRTTNNKISGLVEK-------YRPD-AIIIDANNTGARTCDYLEMLG------ 391
+ L TT KI L + YR I ID G D LE +
Sbjct: 304 VSFRGQSLMTTVGKIVQLYRQAITEFPRYRGKIYINIDDCGLGGGVTDRLEEVKQEEKLT 363
Query: 392 -YHVYRVLGQKRAVDL----------EFCRNRRTELHVKMADWL--EFASLINHSGLIQN 438
+ V + + + N T L + D L E SL N + L+
Sbjct: 364 RMVIVPVNAAGKVPEETLGDGKQKACDIYDNMTTYLWGTVKDALMMEEVSLENDNELVAQ 423
Query: 439 LKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
+ + + + + G++ +ESK + +G S D +D + + + + + G
Sbjct: 424 F-TCRKYRLTSRGKMLLESKEEMKKRGIDSPDRADAVALSCYQ---KKTFNIG 472
>gi|332976102|gb|EGK12970.1| hypothetical protein HMPREF9374_1123 [Desmospora sp. 8437]
Length = 462
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 122/459 (26%), Positives = 195/459 (42%), Gaps = 39/459 (8%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
P + E ++ + + + A+ AG G+GKT AW VLW + TRP
Sbjct: 17 YIRKPGLFVREVLKAEPDEWQDIALQALADNQRVAVRAGHGVGKTATEAWAVLWFLLTRP 76
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGID 165
+ C A ++ QL LW E++KWL P + E Q +
Sbjct: 77 FPKIPCTAPTKPQLMDVLWPEIAKWLMNAPELAPYVEWQKTR------------VVMKQY 124
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
+ + RT +P+ G H + + + DEASG + I I G LT + +
Sbjct: 125 EERWFATARTS--NKPENMAGFHEEH-LLFVIDEASGVDNAIFETIDGALTTAGSK--LV 179
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
M NP R +G FY+ F++ D + ++I + + + +YG DSD+ RV V
Sbjct: 180 MFGNPTRTNGVFYDAFHQDRDLYWTYKISCLDSKMASKDYARNMARKYGEDSDIYRVRVQ 239
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL 345
G+FPQ D DSFIPL ++E+A R+ L +G D+A G D TV+ R GPV L
Sbjct: 240 GEFPQGDPDSFIPLELVEDARVRDLEWIDEDELHIGVDVARFGSDETVLAARIGPVAFRL 299
Query: 346 FDWSKTD-LRTTNNKIS----GLVEKYRPDA--IIIDANNTGARTCDYLEM------LGY 392
+ T ++ L+E++R D + +D G D L+ L
Sbjct: 300 DRYGGRTPTTETVGRVLALARELMEEHRRDYAVVKVDDTGVGGGVTDQLQEIVAEEGLNI 359
Query: 393 HVYRVLGQKRA-VDLEFCRNRRTELHVKMADWLEFASL---INHSGLIQNLKSLKSFIVP 448
V D + + TE + D + + I+ LI L + K +
Sbjct: 360 DVIPCNNGATPEHDPDHYHDWGTESWGTLLDRFKAGEIALKIDDEDLIGQLTTRKK-EMT 418
Query: 449 NTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSD 484
+ G++ +ESK + +G +S D +D L+ FAE +
Sbjct: 419 SKGKIKLESKEKMKKRGQRSPDRADALVLAFAEAATETG 457
>gi|289578588|ref|YP_003477215.1| hypothetical protein Thit_1395 [Thermoanaerobacter italicus Ab9]
gi|289528301|gb|ADD02653.1| conserved hypothetical protein [Thermoanaerobacter italicus Ab9]
Length = 460
Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats.
Identities = 123/464 (26%), Positives = 188/464 (40%), Gaps = 57/464 (12%)
Query: 52 RSW--QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
W Q E ++ V H + A+ A G+GKT + AW+ LW + T
Sbjct: 30 DPWEKQEEILKAVRDHK------------RVAVRACHGVGKTKVAAWVALWFLYTHHNSK 77
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
VI A + Q++ LW E+ + P VL + + + +
Sbjct: 78 VITTAPTWHQVENLLWREIHAAHAASR--------------IPLGGKVLQTQIELGEQWF 123
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
S ++P+ F G H + + I+ DEASG GFLT A ++ N
Sbjct: 124 ---ALGLSTDKPERFQGFHAEHILLIV-DEASGVEQYTFDAAEGFLTSIGAK--LLLIGN 177
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVE-----------GIDPSFHEGIIARYGLDSD 278
P +LSG+FY F PL + + I + P + E ++G DS
Sbjct: 178 PTQLSGEFYNAFRSPL--YHKIHISAFDSPNLKAGKIVRPYLVTPEWVEDKRLKWGEDSP 235
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
+ V G+FP+Q D+ IPL IE A R + P+ +G D+A G D TV++LRR
Sbjct: 236 LWYSRVLGEFPEQGNDTLIPLAWIEAAQQRWHMTEAGEPVEIGADVARYGTDTTVIMLRR 295
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
G E ++ D K+ +K + I ID GA D L+ GY V +
Sbjct: 296 GDKAEIVYQLRGQDTMEVTGKVIDAFKKTGANVIKIDVVGIGAGVVDRLKEQGYPVQGLN 355
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFA--SLINHSGLIQNLKSLKSFIVPNTGELAIE 456
+ A D N+R E + + + + ++ L L SLK + + G + IE
Sbjct: 356 VGESATDKGRFVNKRAEWYWALRERFQEGTIAIPPDDELASQLASLK-YKFDSRGRIQIE 414
Query: 457 SK---RVKGAKSTDYSDGLMYTF----AENPPRSDMDFGRCPSY 493
SK R +G S D +D LM F + D R S+
Sbjct: 415 SKEELRRRGLPSPDKADALMLAFSSTGMKPVDEKIKDIFRRASF 458
>gi|255282256|ref|ZP_05346811.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
gi|255267204|gb|EET60409.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
Length = 506
Score = 388 bits (996), Expect = e-105, Method: Composition-based stats.
Identities = 111/460 (24%), Positives = 184/460 (40%), Gaps = 48/460 (10%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
P + E ++ E + A+ +G+G+GKT + A VLW +S
Sbjct: 34 YRKDPVLYAREVLQFEPDEWQRDALMDLAEESRVAVKSGQGVGKTGIEAVAVLWFLSCFR 93
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
V+ A + QL LW+E++KW P L W ++
Sbjct: 94 YARVVATAPTRQQLHDVLWSEIAKWQERSP---------LLKAILRWTKTYVYV--KGYE 142
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
K + + RT + +P+ G H M I DEASG D I +LG L+ N +M
Sbjct: 143 KRWFAVARTAT--KPENMQGFHED-NMLFIVDEASGVADPIMEAVLGTLS--GGNNKLLM 197
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
NP R +G FY+ F K + + + D + + +I +YG DS++ RV V G
Sbjct: 198 CGNPTRTTGTFYDAFTKDRSIFACHTVSSLDSSRTDKNNIDALIRKYGEDSNLVRVRVKG 257
Query: 287 QFPQQDIDSFIPLNIIEEALNRE---PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
FP+QD D FI +I++ +R+ P A +I+G D+A G D TV+ I+
Sbjct: 258 LFPKQDDDVFISQELIDQCTSRQYELPESRGMAQVILGVDVARYGNDETVIYRNFKGRIK 317
Query: 344 HLFDWSKTDLRTTNNKISGLV----EKYRP----DAIIIDANNTGARTCDYLEMLGYH-- 393
+ + +L T I + Y I ID G D L +
Sbjct: 318 MVRNRRGQNLMATAGDIVREYRHIVDGYPGFDGKIYINIDDTGLGGGVTDRLREVKKEQK 377
Query: 394 -----VYRVLGQKR--------AVDLEFCRNRRTELHVKMADWLEFASLI--NHSGLIQN 438
+ + ++ E+ N T + + + LE ++ + + +
Sbjct: 378 LTRMVIIPINAAEKIETDTKAGKEAAEYYNNLTTHMWAAVRELLEKREIVIEDDAETVAQ 437
Query: 439 LKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYT 475
L K + V + G++ IE K + +G S D +D L +
Sbjct: 438 LSMRK-YTVASNGKIEIEPKKEMKKRGLDSPDRADALTLS 476
>gi|167767949|ref|ZP_02440002.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
gi|167710278|gb|EDS20857.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
gi|291560988|emb|CBL39788.1| hypothetical protein CL2_30180 [butyrate-producing bacterium SSC/2]
Length = 473
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 121/488 (24%), Positives = 193/488 (39%), Gaps = 68/488 (13%)
Query: 11 TEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSV 70
+ + + + + F VL F+ P WQ E + +
Sbjct: 7 HDFLVESIPLWQQNPVQFFEEVLFFY--------------PDEWQKEAAFALRDN----- 47
Query: 71 NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK 130
K I +G+G+GKT A +LW +S V+ A + QL LWAEVSK
Sbjct: 48 -------SKVTIKSGQGVGKTGFEAATLLWFLSCFENARVVATAPTLHQLNDVLWAEVSK 100
Query: 131 WLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
W S P K + + + + + RT + P+ G H
Sbjct: 101 WQSKSPLLKEILQWTKTKISMIG------------SKERWYAVARTATT--PENMQGFHE 146
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
M I DEASG D I ILG LT +N ++ NP + SG FY+ +
Sbjct: 147 D-NMLFIVDEASGVADPIMEAILGTLT--GSNNKLLLCGNPTKASGTFYDSHTSDRKLYY 203
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+++ + + + +I +YG +S+V RV V G FP+QD D ++PL ++E ++ E
Sbjct: 204 CITVNSAESKRTNKDNIDSLIRKYGEESNVVRVRVKGLFPKQDDDVYMPLEMLEASIILE 263
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE---- 365
P P +G D+A G D+TV+ I DL T +
Sbjct: 264 EIP-PADICTLGVDVARFGDDDTVIARNMNNKITLEKIRHGQDLMKTVGDVVVECRNIKE 322
Query: 366 --KY-RPDAIIIDANNTGARTCDYLEML-------GYHVYRVLGQKRAVDL---EFCRNR 412
KY + +IID G D L L G + V D E +
Sbjct: 323 KFKYKKTIYVIIDDTGLGGGVTDRLNELKSEGKLSGVVIVPVNFSAAVPDKKAAEKYHDI 382
Query: 413 RTELHVKMADWLE--FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTD 467
+ + D LE A L N + LI L S + + + ++G++ +ESK + + +S D
Sbjct: 383 TSYAWSILRDMLEEKEAVLPNDTELIAQL-SARKYDLSSSGKIRLESKKAMKERIGESPD 441
Query: 468 YSDGLMYT 475
+D ++ +
Sbjct: 442 RADAVVLS 449
>gi|332980681|ref|YP_004462122.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
gi|332698359|gb|AEE95300.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
Length = 486
Score = 384 bits (987), Expect = e-104, Method: Composition-based stats.
Identities = 110/470 (23%), Positives = 182/470 (38%), Gaps = 60/470 (12%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
+ P + +E + + + + + A+ + G GK+ + ++LW + +
Sbjct: 16 NDPVWFVIEILGTRPWKKQIDIISAVRDNPRTAVRSCHGAGKSFIAGQVILWFLYSFYPS 75
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V+ A + Q++ +W EV S P ++L I
Sbjct: 76 IVLSTAPTWRQVEKLIWKEVR--------------ASYRRSKVPLGGNLLPKRPEIQIIQ 121
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
S PD F G H + ++ DEA+G P+ I I G LT +A ++
Sbjct: 122 DEWYAVGLSTNEPDRFQGFHEE-NILVVVDEAAGVPEEIFEAIEGVLTSEHAR--LLLLG 178
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE----------------------------- 259
NP + G FY F P W+ I T
Sbjct: 179 NPTSVGGTFYNAFRTPG--WENISISAFTTPNFTAFGITEDDIINKTWESKITNSLPNPK 236
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
I P++ R+G +S + V GQFP + D+ IPL IE A+ R P+
Sbjct: 237 LITPAWVADKYRRWGPNSPAYQARVLGQFPSEGEDTLIPLAWIEAAMARWEDTPEGEPIE 296
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A G D TV+ RRG + L ++K D T I + K +D
Sbjct: 297 IGVDVARFGSDKTVIAARRGQKVLPLNVYAKQDTMETVGCIIMVHRKIGASKTKVDVIGV 356
Query: 380 GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL--------EFASLIN 431
GA D L+ G+ V + + A D E N R+EL M + L E +L
Sbjct: 357 GAGVVDRLKEQGHPVIGINVAEAATDTEKFANLRSELWWNMRELLDPNQRLNPEPIALPP 416
Query: 432 HSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAE 478
L+ +L +K + + + G + +ESK + + +S D +D ++ FA+
Sbjct: 417 DDELLADLSGVK-YKIDSRGRIQVESKEDMKKRLGRSPDRADAVVLAFAK 465
>gi|319956916|ref|YP_004168179.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
16511]
gi|319419320|gb|ADV46430.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
16511]
Length = 462
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 113/419 (26%), Positives = 185/419 (44%), Gaps = 26/419 (6%)
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
+ ++ + K +I +G G GKTTL AW+VLW R + A + QL
Sbjct: 30 KQQMKAIRAIDQGKKKISIRSGHGTGKTTLLAWIVLWWGLGREDAKIPMTAPTGHQLYDL 89
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY-STMCRTYSEERPD 182
L E+ KW +P + + ++V + ID + + RT +++P+
Sbjct: 90 LMPEIRKWREKMPVQ--------------YQNEVEVKTEKIDFANGNFAVPRTARKDQPE 135
Query: 183 TFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
G H T +A I DEASG P VI G +T + IM +NP R G FY+ +
Sbjct: 136 ALQGFHAT-NLAFIIDEASGIPQVIFEVAEGAMTGE--STLVIMAANPTRTEGYFYDSHH 192
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K W+ FQ + E + + E +YG DSDV RV + G+FP+Q ++ L +
Sbjct: 193 KNRWQWECFQFNAEESENVSKEWIEEKKRQYGEDSDVYRVRIKGEFPRQSSNAVFSLQEV 252
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
++A RE D A + G D+A+ G D +V+ R+G + S L +
Sbjct: 253 DDATTREIVDDSGAEV-WGLDVADFGDDKSVLAKRKGKHFHEITARSGLTLPDLAGWLIY 311
Query: 363 LVEKY--RPDAIIIDANNTGARTCDYLEMLGYH-VYRVLGQKRAVDLEFCRNRRTELHVK 419
+ +P I +DA G+ G V V G A + E N+R E +
Sbjct: 312 EYNQAKRKPAVIFVDAIGIGSSLPAVCFEKGLDIVIGVKGSNSASNSEKYHNKRAEWYYN 371
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAI-ESK--RVKGAKSTDYSDGLMYT 475
+ D LE + + L+ L + + + + +TG++ + E K + + +S D +D T
Sbjct: 372 LKDLLEDGKIPDDDELVGELMA-QKYQISSTGKIQLVEKKEIKKELGRSPDKADACALT 429
>gi|253578914|ref|ZP_04856185.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849857|gb|EES77816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 473
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 109/451 (24%), Positives = 180/451 (39%), Gaps = 48/451 (10%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
P + E + K +I +G+G+GKT L A + LW ++ P
Sbjct: 4 DDPVMFFREVLNFEPDEWQAQAARDLAANPKVSIKSGQGVGKTGLEAAVFLWFVTCFPHP 63
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
++ A ++ QL LW+E+SKW+S W ++ + K
Sbjct: 64 RIVATAPTKQQLHDVLWSEISKWMSKSELLSIL---------LKWTKTYVYMV--GEEKR 112
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ + RT + +P+ G H M I DEASG D I ILG L+ AN ++
Sbjct: 113 WFGVARTAT--KPENMQGFHED-NMLFIVDEASGVADPIMEAILGTLS--GANNKLLLCG 167
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
NP + SG FY+ + +K + + + + ++ +YG DS+V RV V G+F
Sbjct: 168 NPTKTSGTFYDSHTRDRALYKCHTVSSMDSTRTNKENIDSLVRKYGWDSNVVRVRVRGEF 227
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAP---LIMGCDIAEEGGDNTVVVLRRGPVIEHL 345
P Q+ D FIPL++IE+ ++ D + +G D+A G D T++ + +
Sbjct: 228 PNQEDDVFIPLSLIEQCSSKLLELDDADGMQFVSLGVDVARFGDDETIIYRNYHGHCKIV 287
Query: 346 FDWSKTDLRTTNNKISGLVEK-YRPD-------AIIIDANNTGARTCDYLEM-------L 390
+ +L T I +K YR + ID G D L+
Sbjct: 288 RNRRGQNLMATVGDIVQEFKKIYREHPTYESKVYVQIDDTGLGGGVTDRLKEVRKEQKLY 347
Query: 391 GYHVYRVLGQKR--------AVDLEFCRNRRTELHVKMADWL--EFASLINHSGLIQNLK 440
V + ++ E N T + M D L + + + I L
Sbjct: 348 KMQVIPINAAEKIETDTAAGKDAAERYNNLTTAMWASMRDLLDNKQIVIEDDEQTIGQLS 407
Query: 441 SLKSFIVPNTGELAIESK---RVKGAKSTDY 468
S K + + + G+L IE K + +G S D
Sbjct: 408 SRK-YTMASNGKLEIEPKKEMKKRGLDSPDR 437
>gi|160940775|ref|ZP_02088117.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
BAA-613]
gi|158436295|gb|EDP14062.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
BAA-613]
Length = 484
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 113/487 (23%), Positives = 185/487 (37%), Gaps = 70/487 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
L P + + + + + ++ +G GIGK+ + AW V+W M T
Sbjct: 8 LFYADNPIYFVEDVIRAKPDEKQRDILRSLRDYPMTSVRSGHGIGKSAVEAWSVIWYMCT 67
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
RP + C A +E QL LWAE+SKW+ P W + L+
Sbjct: 68 RPFPKIPCTAPTEHQLMDVLWAEISKWMRNNPALRD---------DLIWTKEKLYMQ--G 116
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
+ + + RT + P+ G H + + II DEASG D + +LG +T +A
Sbjct: 117 HPEEWFAVPRTAT--NPEALQGFHAEHVLYII-DEASGVSDKVFEPVLGAMTGEDAK--L 171
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+M NP RL+G FY+ ++ + + +D R + + +F + II +G DSDV RV V
Sbjct: 172 LMMGNPTRLAGFFYDSHHRNREQYSAIHVDGRDSQHVSRTFVQKIIDMFGEDSDVFRVRV 231
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV--- 341
GQFP+ DS I + EEA N + P + +G D+A G D++ +
Sbjct: 232 AGQFPKSTPDSLIAMEWCEEAANLQV-YAPGGQIDIGVDVARYGDDSSALYPLIDKKQSL 290
Query: 342 IEHLFDWSKTDLRT--TNNKISGLVEKYRPDAI--IIDANNTGARTCD------------ 385
L+ ++T I Y AI +D + G D
Sbjct: 291 PYELYHHNRTTEIAGYVVIMIKQFAMDYPDAAIRVKVDCDGLGVGVYDNLYDQRDQIIDA 350
Query: 386 ----YLEMLGYH-------------------VYRVLGQKRA-----VDLEFCRNRRTELH 417
G + + D N +
Sbjct: 351 IWYDRCRRAGINPEDGNQWNECQNVPKLDLEIIECHFGGSGGKVDDNDPVEYSNSTGLMW 410
Query: 418 VKMADWLEFASL--INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGL 472
K+ +L+ L + L+ L + + ++V G+L +E K + +G S D +D L
Sbjct: 411 GKVRKYLQEGKLQLPDDDTLVSQLCNRR-YLVNKDGKLELERKESMKKRGLTSPDIADAL 469
Query: 473 MYTFAEN 479
E
Sbjct: 470 ALALYEP 476
>gi|302120432|gb|ADK92426.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 255
Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats.
Identities = 250/255 (98%), Positives = 254/255 (99%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
IGKTTLNAWLVLWLMS RPG+S+ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS
Sbjct: 1 IGKTTLNAWLVLWLMSIRPGMSIICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 60
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI
Sbjct: 61 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 120
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE 267
NLGILGFLTE+NANRFWIMTSNPRRLSGKFYEIFN+PLDDWKRFQIDTRTVEGIDPSFHE
Sbjct: 121 NLGILGFLTEQNANRFWIMTSNPRRLSGKFYEIFNRPLDDWKRFQIDTRTVEGIDPSFHE 180
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE
Sbjct: 181 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 240
Query: 328 GGDNTVVVLRRGPVI 342
GGDNTVVVLRRGPVI
Sbjct: 241 GGDNTVVVLRRGPVI 255
>gi|266623290|ref|ZP_06116225.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
gi|288864932|gb|EFC97230.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
Length = 484
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 107/488 (21%), Positives = 191/488 (39%), Gaps = 72/488 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
L P + + + V + + ++ +G G+GK+ + +W V+W + T
Sbjct: 8 LFYADEPIYFVEDIIRVTPDQKQRDILRSLRDYPMTSVRSGHGVGKSAVESWSVIWFLCT 67
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLG 163
RP + C A ++ QL LWAE+SKWL P K+ ++ +
Sbjct: 68 RPFPKIPCTAPTQHQLYDILWAEISKWLRNNPELKNDIIWTQQRVYMNGY---------- 117
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ + + RT + P+ G H + + II DEASG D + +LG +T +A
Sbjct: 118 --PEEWFAVPRTAT--NPEALQGFHAEHVLYII-DEASGVSDKVFEPVLGAMTGEDAK-- 170
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
+M NP RLSG F++ +K ++ ID R + ++ F + II +G+DSDV RV
Sbjct: 171 LLMMGNPTRLSGFFFDSHHKSRSEYSAMHIDGRDSQHVNQKFVQKIINMFGMDSDVFRVR 230
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
V GQFP+ DS I ++ E A +P + +G D+A G D++ + V
Sbjct: 231 VAGQFPKSTPDSLIMMDWCEAATQLKPETVRN-RVDIGVDVARYGDDSSALYPVIDKVQS 289
Query: 344 HLFD-WSKTDLRTTNNKISGLVEKYRPD------AIIIDANNTGARTCDYLE-------- 388
++ + + + ++++Y + + +D + G D L
Sbjct: 290 DGYELYHHNRTTEISGYVVQMIKRYAVECLDAVIRVKVDCDGLGVGVYDNLYDLTDQIID 349
Query: 389 ---------------------------MLGYHVYRVLGQKRA-----VDLEFCRNRRTEL 416
L + D N +
Sbjct: 350 EVWRDRCRREGLDPDNGNQWNECQRIPQLDLEIVECHFGAAGGKIDEDDPVEYSNSTGLM 409
Query: 417 HVKMADWLEFAS--LINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDG 471
K+ L+ + + + LI L + + +IV G+L +E K + +G S D +D
Sbjct: 410 WGKIRKLLQTGALQIPDDDALISQLSNRR-YIVNKDGKLELERKEAMKKRGLPSPDIADA 468
Query: 472 LMYTFAEN 479
L +
Sbjct: 469 LALALYDP 476
>gi|153810665|ref|ZP_01963333.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
gi|149833061|gb|EDM88143.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
Length = 469
Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 123/465 (26%), Positives = 195/465 (41%), Gaps = 53/465 (11%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
L + P + + ++ + E ++ +G GIGK+ + AW V+W M T
Sbjct: 8 LYYANHPVEFVQDILKADPDPEQKKILRSLVENQMTSVRSGHGIGKSAVEAWSVIWFMCT 67
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
P + C A ++ QL LWAE+SKW W + L+
Sbjct: 68 HPYPKIPCTAPTQHQLFDILWAEISKWKRN---------NKTLDSELIWTKEKLYM--KG 116
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
++ + + RT S PD G H + M I DEASG D I +LG L+ A
Sbjct: 117 HAEEWFAVARTAST--PDALQGFHAEH-MLYIIDEASGVEDKIFEPVLGALSTPGAK--L 171
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+M NP +LSG FY+ NK + + F ID R + F + II YG DSDV RV V
Sbjct: 172 LMCGNPTQLSGFFYDSHNKNREQYSTFHIDGRNSTRVSQEFVQTIINMYGEDSDVFRVRV 231
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI-MGCDIAEEGGDNTVVVLRRGPVIE 343
G FP + D +IPL ++E+++ E P + +I +GCD+A G D TV+ R ++
Sbjct: 232 AGDFPLAEDDIYIPLPLVEKSIATEYFPRRHPQIIHIGCDVARFGTDKTVIGYRTDEKVQ 291
Query: 344 HLFDWSKTDLRTTNNKISG----LVEKYR-------PDAIIIDANNTGARTCDYLEMLGY 392
D T + I LV +Y P I ID G D L +
Sbjct: 292 FFKKRVGQDTMKTADDIVSLGMLLVYQYGLKPDIDEPIPIKIDDGGVGGGVVDRLRQIKR 351
Query: 393 H---------VYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-----------FASLINH 432
+ VY V ++ + +F + T + + L+ L +
Sbjct: 352 NNPERFWWMEVYPVKFGQK-IRHKFFDDSTTYMMSVLKKLLQPFDDNGLPKDVEIILPDD 410
Query: 433 SGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
L+ + K + + ++ +ESK + +G +S D +D ++
Sbjct: 411 DALVAQISGRK-YEMTENSKIRVESKKVMKARGVQSPDEADCILL 454
>gi|148653111|ref|YP_001280204.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
gi|148572195|gb|ABQ94254.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
Length = 520
Score = 340 bits (871), Expect = 4e-91, Method: Composition-based stats.
Identities = 91/490 (18%), Positives = 181/490 (36%), Gaps = 73/490 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+WQ E + + + ++++G G GK+ + LW + P ++
Sbjct: 41 TWQQELL----------FKSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLF 90
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC-----SLGIDSK 167
A QL+T +W E++ L L N W +D + +
Sbjct: 91 TAPQIGQLRTVVWKEINICLQRLRNNK----------ALGWLADYVVVLAEKIYIKGFKD 140
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ +T + +P G H + M + DEA G D + +G LT N ++T
Sbjct: 141 TWFVFAKTAPKHQPTNIAGQHGDHYM-VWADEACGIDDAVMEVAIGALTHENNRA--VLT 197
Query: 228 SNPRRLSGKFYEIFNK----PLDDWKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRV 282
S P + +G FY+ +K W + + + + +YG +S +
Sbjct: 198 SQPAKNTGFFYDTHHKLSHHNGGKWTALEFNGEMSPIVSKDKLIEALYQYGSRNSPGYLI 257
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY---APLIMGCDIAEE-GGDNTVVV--- 335
+ G+FP+ ++ E + ++PC +I+ D+ + G D++V+
Sbjct: 258 RIRGKFPELK-GEYLLTRTDYENMKQQPCVIEEGDKWGIIVAVDVGGDVGRDSSVISVMQ 316
Query: 336 ----LRRGPVIEHLFDW------SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
+ +G + H+ ++ ++ T KI+ ++ Y ++ID G
Sbjct: 317 VVDKMIKGRIERHVHLLDIPLFSNRANINTLKAKINDVMSDYPGATLVIDPLGAGMGLTQ 376
Query: 386 YLEMLGYHVYRVLGQKRAVD---LEFCRNRRTELHVKMADWLEFA---SLINHSGLIQNL 439
L+ G + V + + N+R+ +V MA +E + Q +
Sbjct: 377 SLKADGVYFDEVHWGSPCFNNTLKRYYMNKRSHAYVSMAKAVEKGYFSVSDKVKKMYQVM 436
Query: 440 KSLKS------FIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
+L+ + + SK+ KG KS D +D + + F EN
Sbjct: 437 TNLEEQMTRLPYYFDEKARWCMMSKKDMLKKGIKSPDIADTIAFGFMEN-------ISYA 489
Query: 491 PSYQYEGVDL 500
P YE +++
Sbjct: 490 PVESYEDLNI 499
>gi|332974843|gb|EGK11758.1| hypothetical protein HMPREF9373_1714 [Psychrobacter sp. 1501(2011)]
Length = 520
Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 90/490 (18%), Positives = 180/490 (36%), Gaps = 73/490 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+WQ E + + + ++++G G GK+ + LW + P ++
Sbjct: 41 TWQQELL----------FKSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLF 90
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC-----SLGIDSK 167
A QL+T +W E++ L L N W +D + +
Sbjct: 91 TAPQIGQLRTVVWKEINICLQRLRNNK----------ALGWLADYVVVLAEKIYIKGFKD 140
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ +T + +P G H + M + DEA G D + +G LT N ++T
Sbjct: 141 TWFVFAKTAPKHQPTNIAGQHGDHYM-VWADEACGIDDAVMEVAIGALTHENNRA--VLT 197
Query: 228 SNPRRLSGKFYEIFNK----PLDDWKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRV 282
S P + +G FY+ +K W + + + + +YG +S +
Sbjct: 198 SQPAKNTGFFYDTHHKLSHYNGGKWIALEFNGEMSPIVSKEKLIEALYQYGSRNSPGYLI 257
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY---APLIMGCDIAEE-GGDNTVVV--- 335
+ G+FP+ ++ E + PC +I+ D+ + G D++V+
Sbjct: 258 RIRGKFPELK-GEYLLTRTDYENMKAHPCVIKEGDKWGIIVTVDVGGDVGRDSSVISVLQ 316
Query: 336 ----LRRGPVIEHLFDW------SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
+ +G + H+ ++ ++ T KI+ ++ Y ++ID G
Sbjct: 317 VVDKMVKGRIERHVHLLDIPLFSNRANINTLKAKINDVMSDYPGATLVIDPLGAGMGLTQ 376
Query: 386 YLEMLGYHVYRVLGQKRAVD---LEFCRNRRTELHVKMADWLEFA---SLINHSGLIQNL 439
++ G + V + + N+R+ +V MA +E + Q +
Sbjct: 377 SVKADGVYFDEVHWGSPCFNNTLKRYYMNKRSHAYVSMAKAVEKGYFSVSDKIKKMYQVI 436
Query: 440 KSLKS------FIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
+L+ + + SK+ KG KS D +D + + F EN
Sbjct: 437 TNLEEQMTRLPYYFDEKARWCMMSKKDMLKKGIKSPDIADTIAFGFMEN-------ISYA 489
Query: 491 PSYQYEGVDL 500
P+ YE +++
Sbjct: 490 PAESYEDLNI 499
>gi|83593922|ref|YP_427674.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
gi|83576836|gb|ABC23387.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
Length = 505
Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats.
Identities = 111/463 (23%), Positives = 176/463 (38%), Gaps = 62/463 (13%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P K + AG G+GKTT A + W + C A + +QL+ LW+E+++
Sbjct: 34 PAGAKVTVRAGHGVGKTTATAAAIWWHLECFDYSKTPCTAPTASQLEQILWSELARLRRR 93
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLH-CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY-- 191
+ +L ++ + + + + RT ++PD G H +
Sbjct: 94 ADARAQGTGLPAALRLEALFAVSGRAIADRGTPREWFVVARTARRDQPDALQGFHASDID 153
Query: 192 ----------------GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+ + +EASG PD + G L+ A +M NP R +G
Sbjct: 154 LEAGAGPRLSAKSGGAALMFVIEEASGVPDAVFEVAEGALSSPGAR--LLMVGNPTRNTG 211
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
F + + ++ +DP + G++ +YG +S+V RV G FP+QD D
Sbjct: 212 FFARSHKRDRASFTALRLRCADSPLVDPGYRAGLVRKYGAESNVVRVRADGAFPRQDDDV 271
Query: 296 FIPLNIIEEALNREPCPDPYAP---LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD 352
I L E AL R P P A +G D+A G D TV +LR GPV+ + + D
Sbjct: 272 LIALETAEAALAR-PLPARMATEDERRLGVDVARFGDDRTVFLLRIGPVVGAIEVTAGRD 330
Query: 353 LRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG----YHVYRVLGQKRAVDLEF 408
+ L E +R I +D GA D L G +RA E
Sbjct: 331 TMAVAGRARRLAEIWRAGRIYVDEIGVGAGVVDRLREDGAPVVAVNVAASAPERAAGEER 390
Query: 409 CRNRRTELHVKMADWLE------------------------FASLI---NHSGLIQNLK- 440
R R L + + WL S + + L Q+L
Sbjct: 391 GRLLRDHLWLMVRGWLRDEAPVFAGPGGGPASGSAAGLLSGMGSCLVPGVDADLAQDLAG 450
Query: 441 --SLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAE 478
+ + +G + +ESK + +G +S D +D L TF E
Sbjct: 451 ELATPRYAFDGSGRVVVESKDAMKRRGLRSPDLADALALTFHE 493
>gi|269119479|ref|YP_003307656.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
gi|268613357|gb|ACZ07725.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
Length = 499
Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats.
Identities = 99/472 (20%), Positives = 177/472 (37%), Gaps = 53/472 (11%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF----KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
F ++++ H L+ + F + ++ AG GK++L L + + TRP VI
Sbjct: 22 FKDILNFHFLSEDQTRVLQAFNEYRRLSVPAGHSTGKSSLAGGLTTYWLITRPKSRVIVT 81
Query: 114 ANSETQLKTTLWAEVSKWLSLLP---------------------NKHWFEMQSLSLHPAP 152
A + QLKT WAEV+K + + WF + + P
Sbjct: 82 APTYRQLKTIYWAEVNKIYNRSKLKQLNLFEINDKIMRINDKDLKREWFALPVTASTPEG 141
Query: 153 WYS---------DVLHCSLGI----DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + LGI D + + + E+ + + + ++ DE
Sbjct: 142 MQGQHGDKTEVIEQIMKHLGIEEIGDDETIEIVSQILRGEKQIEGLTKEDKEKLLVMVDE 201
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
+SG + I + G T+ + ++ N + +G FYE P + + + +
Sbjct: 202 SSGVKNEIFEVLEG--TDYD---KLVLFGNMTKNTGYFYESVYNPKSKFYKVTMSSYNSP 256
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ + YG DS+V RV + G+ P + +S N I+ A R Y +
Sbjct: 257 FMKKEQIHDLEETYGPDSNVVRVRLKGEAPDGNENSIFSSNKIDSAFQRSLSLSEYETIK 316
Query: 320 MGCDIA-EEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII--IDA 376
+G D+ GGD++ + ++ + D L +I K R II ID
Sbjct: 317 LGVDVGKGSGGDSSTIYEKKDNRVRKKLDRKDFTLPDVKREIIQYCYKNRDKLIIANIDG 376
Query: 377 NNTGARTCDYLEM---LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS 433
G LE V + +A + + N+RTE++ +++ L+ L
Sbjct: 377 TGLGTGLVQELEEGEIENLVVNDIQFAGKAKNKKEFNNKRTEMYFELSRNLDKLDLEEDQ 436
Query: 434 GLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPR 482
L + L ++ + N G + SK + S D SD L E R
Sbjct: 437 ELKRELL-IQIYEFDNNGRFKLISKDKIKEMLGHSPDKSDALALCNYEAETR 487
>gi|312964323|ref|ZP_07778627.1| terminase B protein [Escherichia coli 2362-75]
gi|331655801|ref|ZP_08356790.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M718]
gi|312291036|gb|EFR18910.1| terminase B protein [Escherichia coli 2362-75]
gi|323186470|gb|EFZ71817.1| terminase B protein [Escherichia coli 1357]
gi|323969205|gb|EGB64507.1| terminase B protein [Escherichia coli TA007]
gi|325495624|gb|EGC93488.1| DNA pacase B subunit [Escherichia fergusonii ECD227]
gi|331046575|gb|EGI18664.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M718]
Length = 494
Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats.
Identities = 92/483 (19%), Positives = 182/483 (37%), Gaps = 54/483 (11%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L F +WQ + + + + + K ++S+G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS-KWLSLLPNKHWFEMQSLSLHP 150
+ + +++ + PG I +AN Q+ T ++ + W + W L
Sbjct: 64 DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSRFPWLA-DYFVLTE 122
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
+Y ++ + + + + G H + + II DEASG D
Sbjct: 123 TAFYEVTGKGV-------WTVVPKGFRLGSEEALAGEHADHLLYII-DEASGVSDRAFGI 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ +K P + +++ + P
Sbjct: 175 ITGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTP 232
Query: 264 SFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
+F + +A Y G D+ + ++V G FP+ + + +E A R+ +
Sbjct: 233 AFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACV 292
Query: 323 DIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISGLV--EKYRPDA 371
D+A G D +V+ + +R + + +++ KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYL-EMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + E G V R+ K+ D ++R +V+ A+ ++
Sbjct: 353 IAIDGDGLGKATADLMYEYYGITVQRIRWGKKMHSREDKSLYFDKRAYANVQAAEAVKSG 412
Query: 428 --SLINHSGLIQNLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPP 481
L + I+ + + + G+ + S K+ S D+ D + +
Sbjct: 413 RMRLDKGNETIEEASKIPV-GINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLADYV 471
Query: 482 RSD 484
D
Sbjct: 472 PQD 474
>gi|324111095|gb|EGC05081.1| terminase B protein [Escherichia fergusonii B253]
Length = 494
Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 92/483 (19%), Positives = 182/483 (37%), Gaps = 54/483 (11%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L F +WQ + + + + + K ++S+G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS-KWLSLLPNKHWFEMQSLSLHP 150
+ + +++ + PG I +AN Q+ T ++ + W + W L
Sbjct: 64 DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSRFPWLA-DYFVLTE 122
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
+Y ++ + + + + G H + + II DEASG D
Sbjct: 123 TAFYEVTGKGV-------WTVVPKGFRLGSEEALAGEHADHLLYII-DEASGVSDRAFGI 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ +K P + +++ + P
Sbjct: 175 ITGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTP 232
Query: 264 SFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
+F + +A Y G D+ + ++V G FP+ + + +E A R+ +
Sbjct: 233 AFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACV 292
Query: 323 DIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISGLV--EKYRPDA 371
D+A G D +V+ + +R + + +++ KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRILEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYL-EMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + E G V R+ K+ D ++R +V+ A+ ++
Sbjct: 353 IAIDGDGLGKATADLMYEYYGITVQRIRWGKKMHSREDKSLYFDKRAYANVQAAEAVKSG 412
Query: 428 --SLINHSGLIQNLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPP 481
L + I+ + + + G+ + S K+ S D+ D + +
Sbjct: 413 RMRLDKGNETIEEASKIPV-GINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLADYV 471
Query: 482 RSD 484
D
Sbjct: 472 PQD 474
>gi|56266643|gb|AAV84926.1| DNA pacase B subunit [Enterobacteria phage phiW39]
Length = 494
Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats.
Identities = 92/483 (19%), Positives = 182/483 (37%), Gaps = 54/483 (11%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L F +WQ + + + + + K ++S+G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS-KWLSLLPNKHWFEMQSLSLHP 150
+ + +++ + PG I +AN Q+ T ++ + W + W L
Sbjct: 64 DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKINWATATSRFPWLA-DYFVLTE 122
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
+Y ++ + + + + G H + + II DEASG D
Sbjct: 123 TAFYEITGKGV-------WTVVPKGFRLGSEEALAGEHADHLLYII-DEASGVSDRAFGI 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ +K P + +++ + P
Sbjct: 175 ITGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTP 232
Query: 264 SFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
+F + +A Y G D+ + ++V G FP+ + + +E A R+ +
Sbjct: 233 AFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACV 292
Query: 323 DIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISGLV--EKYRPDA 371
D+A G D +V+ + +R + + +++ KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYL-EMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + E G V R+ K+ D ++R +V+ A+ ++
Sbjct: 353 IAIDGDGLGKATADLMYEYYGITVQRIRWGKKMHSREDKSLYFDKRAYANVQAAEAVKSG 412
Query: 428 --SLINHSGLIQNLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPP 481
L + I+ + + + G+ + S K+ S D+ D + +
Sbjct: 413 RMRLDKGNETIEEASKIPV-GINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLADYV 471
Query: 482 RSD 484
D
Sbjct: 472 PQD 474
>gi|168467778|ref|ZP_02701615.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|195629119|gb|EDX48493.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
Length = 494
Score = 313 bits (803), Expect = 4e-83, Method: Composition-based stats.
Identities = 94/482 (19%), Positives = 181/482 (37%), Gaps = 52/482 (10%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
+ + W + F +WQ + + SV P K ++S+G G GK+
Sbjct: 16 AQYRYDWIAAADVM--FGKTPTWQQD-------QIIESVQEPGS---KTSVSSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS-KWLSLLPNKHWFEMQSLSLHP 150
+ + +++ + PG I +AN Q+ T ++ + W + W + L
Sbjct: 64 DMTSIMIMLFIIMFPGARAIIVANKIQQVMTGIFKYLKINWSTATSRFPWLA-EYFVLTD 122
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
+Y ++ + + + + G H + + II DEASG D
Sbjct: 123 TSFYEITSKGV-------WTVVPKGFRLGNEEALAGEHADHLLYII-DEASGVSDKAFGI 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDP 263
+ G LT ++ + S P R SG FY+ +K P + +++ + P
Sbjct: 175 MTGALTGKDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPNGIYTAITLNSEESPLVTP 232
Query: 264 SFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
F + +A Y G DS + ++V G FP+ + + +E A R+ I
Sbjct: 233 EFIKMKLAEYGGRDSPMYLIKVRGLFPKTQDGFLLGRDEVERASRRKVKIAKGWGWIACV 292
Query: 323 DIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISGLV--EKYRPDA 371
D+A G D +V+ + +R + + ++S KI+ ++Y
Sbjct: 293 DVAGGTGRDKSVINIMMVSGERNKRRIIGYRIIEYSDVTETQLAAKINAECSPDRYPNIT 352
Query: 372 IIIDANNTGARTCDYL-EMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I+ID + G T D L + G R+ K+ D ++R +V+ A+ ++
Sbjct: 353 IVIDGDGLGKSTADLLYDNYGITAQRIRWGKKMHSREDRSLYFDQRAYANVQAAEAVKSG 412
Query: 428 SLINHSGLIQ-NLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPPR 482
+ G S + + G+ + S K+ +S D+ D + N
Sbjct: 413 RMRLDKGDATIEEASKIPVGINSAGQWKVMSKEDMKKKLNLRSPDHWDTYCFGMLANYVP 472
Query: 483 SD 484
+
Sbjct: 473 QN 474
>gi|56266666|gb|AAV84947.1| DNA pacase B subunit [Enterobacteria phage D6]
Length = 502
Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats.
Identities = 101/444 (22%), Positives = 176/444 (39%), Gaps = 38/444 (8%)
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
+ + +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++
Sbjct: 49 SVQETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQY 108
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ +H + L +Y + +C+ Y + G H +
Sbjct: 109 WANAVKRHGWLQTYFVLSDTMFYERSRKGI-------WEVLCKGYRLGNEEALAGEHAAH 161
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------P 244
+ +I DEASG D + G LTE + +M S P R SG FY+ + P
Sbjct: 162 -LLLILDEASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNP 218
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
W +++ + P F + + Y G DS V+V GQFP++ + + +
Sbjct: 219 KGIWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECD 278
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL--------RRGPVIEHLFDWSKT-DLR 354
A R+ + + D+ G D +V+ + +R V + + S T D
Sbjct: 279 RAARRKVLLEKNWGWVATADVG-NGRDKSVLNICKVSGHRDKRRVVNFKVMEMSGTMDPL 337
Query: 355 TTNNKISGLV--EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR---AVDLEFC 409
+ I EKY I +DA+ G+ TC L G + R+ K D E
Sbjct: 338 AFADFIYNECTPEKYPNITIAVDADGFGSDTCAQLVRRGANPVRIRWGKPMFANKDRERF 397
Query: 410 RNRRTELHVKMADWLEFASLINHSGLIQNLKSLK-SFIVPNTGELAIESKR----VKGAK 464
N+R ++ D ++ + S ++ K F++ G++A+ K K
Sbjct: 398 VNQRAYANIMARDAIKSGRMRIDSDPKTAEQASKIPFLLNEEGKMAMMRKEHMRQKLNIK 457
Query: 465 STDYSDGLMYTFAENPPRSDMDFG 488
S D D +T + ++ D G
Sbjct: 458 SPDRWDTYCFTMLVDYVPANEDIG 481
>gi|323179619|gb|EFZ65182.1| terminase B protein [Escherichia coli 1180]
Length = 453
Score = 309 bits (791), Expect = 8e-82, Method: Composition-based stats.
Identities = 100/442 (22%), Positives = 174/442 (39%), Gaps = 38/442 (8%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++ +
Sbjct: 2 QETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWA 61
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+H + L +Y + +C+ Y + G H + +
Sbjct: 62 NAVKRHGWLQTYFVLSDTMFYERSRKGI-------WEVLCKGYRLGNEEALAGEHAAH-L 113
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLD 246
+I DEASG D + G LTE + +M S P R SG FY+ + P
Sbjct: 114 LLILDEASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNPKG 171
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
W +++ + P F + + Y G DS V+V GQFP++ + + + A
Sbjct: 172 IWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRA 231
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVL--------RRGPVIEHLFDWSKT-DLRTT 356
R+ + + D+ G D +V+ + +R V + + T D
Sbjct: 232 ARRKVLLEKNWGWVATADVG-NGRDKSVLNICKVSGHRDKRRVVNFKVMEMPGTMDPLAF 290
Query: 357 NNKISGLV--EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR---AVDLEFCRN 411
+ I EKY I +DA+ G+ TC L G + R+ K D E N
Sbjct: 291 ADFIYNECTPEKYPNITIAVDADGFGSDTCAQLVRRGANPVRIRWGKPMFANKDRERFVN 350
Query: 412 RRTELHVKMADWLEFASLINHSGLIQNLKSLK-SFIVPNTGELAIESKR----VKGAKST 466
+R ++ D ++ + S ++ K F++ G++A+ K KS
Sbjct: 351 QRAYANIMARDAIKSGRMRIDSDPKTAEQASKIPFLLNEEGKMAMMRKEHMRQKLNIKSP 410
Query: 467 DYSDGLMYTFAENPPRSDMDFG 488
D D +T + ++ D G
Sbjct: 411 DRWDTYCFTMLVDYVPANEDIG 432
>gi|304399103|ref|ZP_07380971.1| DNA packaging protein [Pantoea sp. aB]
gi|304353343|gb|EFM17722.1| DNA packaging protein [Pantoea sp. aB]
Length = 503
Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats.
Identities = 107/503 (21%), Positives = 189/503 (37%), Gaps = 57/503 (11%)
Query: 34 HFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTL 93
+ + W +E F +WQ E +NSV + +++G G GK++L
Sbjct: 23 YRYNWALA--VVELFGMIPTWQQE-------EIMNSVQETGSQ---TTVTSGHGTGKSSL 70
Query: 94 NAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPW 153
A ++L M P VI +AN Q+KT ++ V + + +H + +L +
Sbjct: 71 TAMMLLIYMIMYPDARVIIVANKIGQVKTGVFKYVKTYWANAARRHPWLQNYFTLTDTMF 130
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG 213
Y + +C+ Y + G H + + I+ DEASG D + G
Sbjct: 131 YEKSRKGI-------WEVLCKGYRLGNEEALAGEHAAHILLIL-DEASGISDKAIAIMRG 182
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDPSFH 266
LTE + +M S P R SG FY+ + P W +++ + F
Sbjct: 183 ALTEEDNR--MLMMSQPTRPSGYFYDSHHSLARHPDNPNGFWNAIVLNSEEAPHVTLKFI 240
Query: 267 EGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIA 325
+ Y G DS V+V G+FP+ + + + A R+ + + D+
Sbjct: 241 REKLVEYGGRDSLEYMVKVLGRFPRNVSGYLLGRDECDRAARRKVYLEKGWGWVATADVG 300
Query: 326 EEGGDNTVVVLR--------RGPVIEHLFDWSKT-DLRTTNNKISGLV--EKYRPDAIII 374
G D +++ + R V L + T D + + I+ E+Y I +
Sbjct: 301 -NGRDKSILNICKVSGYGDARRVVSFKLLEMPGTMDPISFGDYIANECTQERYPGITIAV 359
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDL---EFCRNRRTELHVKMADWLEFASL-I 430
D + G+ T LE G + + + E +N+R ++ AD + + I
Sbjct: 360 DGDGVGSGTLKQLERRGVNAISIRWGQPPFSKKVRERFKNQRAWSNIMAADAIRSGRMRI 419
Query: 431 NHSGLIQNLKSLKSFIVPNTGELAIESK----RVKGAKSTDYSDGLMYTF------AENP 480
+ S S + + G + + K + KS D D + F AE
Sbjct: 420 DMSQHTAEQASKIPYFMDEMGRIMMVPKPQMRQKLNIKSPDRWDTYCFIFLIGYRPAEAE 479
Query: 481 PRSDM-DFGRCPSYQYEGVDLLI 502
DM DF + + +D L+
Sbjct: 480 LSEDMADFTQSKLDELSELDALL 502
>gi|323948959|gb|EGB44853.1| terminase B protein [Escherichia coli H252]
Length = 502
Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats.
Identities = 99/444 (22%), Positives = 175/444 (39%), Gaps = 38/444 (8%)
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
+ + +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++
Sbjct: 49 SVQETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQY 108
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ +H + L +Y + +C+ Y + G H +
Sbjct: 109 WANAVKRHGWLQTYFVLSDTMFYERSRKGI-------WEVLCKGYRLGNEEALAGEHAAH 161
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------P 244
+ +I DEASG D + G LTE + +M S P R SG FY+ + P
Sbjct: 162 -LLLILDEASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSRAKTPDNP 218
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
W +++ + P F + + Y G DS V+V GQFP++ + + +
Sbjct: 219 KGIWTAIVLNSEESPFVTPQFIKEKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECD 278
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL--------RRGPVIEHLFDWSKT-DLR 354
+ R+ + + D+ G D +V+ + +R V + + T D
Sbjct: 279 RSARRKVLLEKNWGWVATADVG-NGRDKSVLNICKVSGHRDKRRVVNFKVMEMPGTMDPL 337
Query: 355 TTNNKISGLV--EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR---AVDLEFC 409
+ I EKY I +DA+ G+ TC L G + R+ K D E
Sbjct: 338 AFADFIYNECTPEKYPNITIAVDADGFGSDTCAQLVRRGANPVRIRWGKPMFANKDRERF 397
Query: 410 RNRRTELHVKMADWLEFASLINHSGLIQNLKSLK-SFIVPNTGELAIESKR----VKGAK 464
N+R ++ D ++ + S ++ K F++ G++A+ K K
Sbjct: 398 VNQRAYANIMARDAIKSGRMRIDSDPKTAEQASKIPFLLNEEGKMAMMRKEHMRQKLNIK 457
Query: 465 STDYSDGLMYTFAENPPRSDMDFG 488
S D D +T + ++ D G
Sbjct: 458 SPDRWDTYCFTMLVDYVPANEDIG 481
>gi|307308936|ref|ZP_07588619.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
BL225C]
gi|306900570|gb|EFN31183.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
BL225C]
Length = 472
Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats.
Identities = 109/439 (24%), Positives = 190/439 (43%), Gaps = 38/439 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ G GKT ++A + W + + V A SE+ +K+ +W E
Sbjct: 50 ITVKGSSGWGKTFISAISLWWSLIVFDPVKVTIFAPSESTIKSGIWNE------------ 97
Query: 140 WFEMQSLSLHPAPWYSDVLHCS-LGIDSKHYSTMC----RTYSEERPDTFVGHHNTYGMA 194
+Q L + AP + ++ S I K C R S++ G H+ +
Sbjct: 98 ---LQVLYSNMAPLFRELFEVSATKIFRKSRGETCWAEYRLVSKDNIAAARGFHSKNNI- 153
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP--LDDWKRFQ 252
+I DEASG DVI G L + ++ SNP + SG F++ + P DW +
Sbjct: 154 VIADEASGIEDVIFTGALLNVLNDGPGAKVVLVSNPDKASGFFFKTWRDPELSKDWIKVH 213
Query: 253 IDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREP 310
R P E YG + S V G+FP D+D I ++EA+ N++
Sbjct: 214 GSIRDKPNYTPGEEERFARLYGGVTSRDYLTLVEGEFPLSDVDGLISREFLDEAVTNKDA 273
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLV----EK 366
P+P AP+I G D A G D +V+ +R V+ +W+ + ++ L +K
Sbjct: 274 IPNPKAPIIWGLDPAGAGKDKSVLAIRHDNVLRGFEEWAGLEPVALALRVKELYLKTSKK 333
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK-RAVDLEFCRNRRTELHVKMADWLE 425
RP I +D N GA D L+ VY+ + + + + R ++ +M +W+
Sbjct: 334 DRPAVIAVDGNGLGAGVYDALKHFKIPVYKCMFAEVPKRNPDRYTRVRDQIWFEMREWIH 393
Query: 426 FA--SLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
S+ NH LI++L ++ ++ ++ ++ IE K + + +S DY+D L TF+ +
Sbjct: 394 TGDVSIPNHKKLIEDL-AIPTYE--DSPKIKIEDKKSLKKRLGRSPDYADALALTFSVSH 450
Query: 481 PRSDMDFGRCPSYQYEGVD 499
R + +Y+ +
Sbjct: 451 TRYASKYQWDKPIEYDNLS 469
>gi|260871239|ref|YP_003238019.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
gi|257767818|dbj|BAI39311.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
Length = 494
Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats.
Identities = 90/482 (18%), Positives = 177/482 (36%), Gaps = 52/482 (10%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L F +WQ + + S ++++G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQD-------EIIESTQQDGSW---TSVTSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV-SKWLSLLPNKHWFEMQSLSLHP 150
+ + + + + PG VI +AN Q+ ++ + S W + + W + L
Sbjct: 64 DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFPWLS-KYFILTE 122
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
++ ++ + ++ + G H + + II DEASG D
Sbjct: 123 TSFFEVTGKGV-------WTILIKSCRSGNEEALAGEHADHLLYII-DEASGVSDKAFSV 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ ++ P + +++ +D
Sbjct: 175 ITGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDA 232
Query: 264 SFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
F +A Y G D+ + ++V G+FP+ + + +E A R+ +
Sbjct: 233 KFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACV 292
Query: 323 DIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISGLV--EKYRPDA 371
D+A G D +V+ + +R + + +++ KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYL-EMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + E G V R+ K+ D + R +++ A+ ++
Sbjct: 353 IAIDGDGLGKSTADLMYERYGITVQRIRWGKKMHSREDKSLYFDMRAFANIQAAEAVKSG 412
Query: 428 SLINHSGLIQ-NLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPPR 482
+ G S + + G+ + S K+ S D+ D + N
Sbjct: 413 RMRLDKGAATIEEASKIPVGINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLANYVP 472
Query: 483 SD 484
D
Sbjct: 473 QD 474
>gi|46401730|ref|YP_006576.1| PacB [Enterobacteria phage P1]
gi|301646767|ref|ZP_07246623.1| putative terminase B protein [Escherichia coli MS 146-1]
gi|129547|sp|P27753|TERL_BPP1 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein B; AltName: Full=PACase B protein; AltName:
Full=Terminase B protein; AltName: Full=Terminase large
subunit
gi|68597607|sp|Q5XLR0|TERL_BPP7 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein B; AltName: Full=PACase B protein; AltName:
Full=Terminase B protein; AltName: Full=Terminase large
subunit
gi|33323612|gb|AAQ07582.1|AF503408_106 PacB [Enterobacteria phage P7]
gi|215636|gb|AAA21724.1| pacB [Enterobacteria phage P1]
gi|33338757|gb|AAQ14080.1| PacB [Enterobacteria phage P1]
gi|33338866|gb|AAQ14188.1| PacB [Enterobacteria phage P1]
gi|54112354|gb|AAV28854.1| PacB [Enterobacteria phage P7]
gi|301075042|gb|EFK89848.1| putative terminase B protein [Escherichia coli MS 146-1]
Length = 494
Score = 306 bits (783), Expect = 7e-81, Method: Composition-based stats.
Identities = 90/482 (18%), Positives = 177/482 (36%), Gaps = 52/482 (10%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L F +WQ + + S ++++G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQD-------EIIESTQQDGSW---TSVTSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV-SKWLSLLPNKHWFEMQSLSLHP 150
+ + + + + PG VI +AN Q+ ++ + S W + + W + L
Sbjct: 64 DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFPWLS-KYFILTE 122
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
++ ++ + ++ + G H + + II DEASG D
Sbjct: 123 TSFFEVTGKGV-------WTILIKSCRPGNEEALAGEHADHLLYII-DEASGVSDKAFSV 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ ++ P + +++ +D
Sbjct: 175 ITGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDA 232
Query: 264 SFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
F +A Y G D+ + ++V G+FP+ + + +E A R+ +
Sbjct: 233 KFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACV 292
Query: 323 DIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISGLV--EKYRPDA 371
D+A G D +V+ + +R + + +++ KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYL-EMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + E G V R+ K+ D + R +++ A+ ++
Sbjct: 353 IAIDGDGLGKSTADLMYERYGITVQRIRWGKKMHSREDKSLYFDMRAFANIQAAEAVKSG 412
Query: 428 SLINHSGLIQ-NLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPPR 482
+ G S + + G+ + S K+ S D+ D + N
Sbjct: 413 RMRLDKGAATIEEASKIPVGINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLANYVP 472
Query: 483 SD 484
D
Sbjct: 473 QD 474
>gi|331649955|ref|ZP_08351031.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M605]
gi|331041212|gb|EGI13366.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M605]
Length = 494
Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats.
Identities = 90/482 (18%), Positives = 177/482 (36%), Gaps = 52/482 (10%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L F +WQ + + S ++++G G GK+
Sbjct: 16 ALYRYDWIAAADVL--FGKTPTWQQD-------EIIESTQQDGSW---TSVTSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV-SKWLSLLPNKHWFEMQSLSLHP 150
+ + + + + PG VI +AN Q+ ++ + S W + + W + L
Sbjct: 64 DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIKSNWATAVSRFPWLS-KYFILTE 122
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
++ ++ + ++ + G H + + II DEASG D
Sbjct: 123 TSFFEVTGKGV-------WTILIKSCRPGNEEALAGEHADHLLYII-DEASGVSDKAFSV 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ ++ P + +++ +D
Sbjct: 175 ITGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDA 232
Query: 264 SFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
F +A Y G D+ + ++V G+FP+ + + +E A R+ +
Sbjct: 233 KFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACV 292
Query: 323 DIA-EEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISGLV--EKYRPDA 371
D+A G D +V+ + +R + + +++ KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRMQEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYL-EMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + E G V R+ K+ D + R +++ A+ ++
Sbjct: 353 IAIDGDGLGKSTADLMYERYGITVQRIRWGKKMHSREDKSLYFDMRAFANIQAAEAVKSG 412
Query: 428 SLINHSGLIQ-NLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPPR 482
+ G S + + G+ + S K+ S D+ D + N
Sbjct: 413 RMRLDKGAATIEEASKIPVGINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLANYVP 472
Query: 483 SD 484
D
Sbjct: 473 QD 474
>gi|48697461|ref|YP_024846.1| Pas60 [Actinoplanes phage phiAsp2]
gi|47679679|gb|AAT36808.1| Pas60 [Actinoplanes phage phiAsp2]
Length = 492
Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats.
Identities = 105/461 (22%), Positives = 173/461 (37%), Gaps = 53/461 (11%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
+P +W + ++V A + + P + A+ G+GK+ A LV W +TR +
Sbjct: 21 DSPTAWAADCLDVRLAGYQGEILDAVPRERRVAVRGPHGLGKSFSGAILVNWFATTRDLM 80
Query: 109 ----SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
+I A++ L+ LW E+ KW + ++L AP+ L +
Sbjct: 81 GKDWKIITTASAWRHLEVYLWPEIHKWAG--------RINFVALGRAPYNPRTELLDLRL 132
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA---- 220
H + + +P+ G H + + DEA P I G +
Sbjct: 133 KLTHGAATA--VASNQPERIEGAHAEE-LLYLLDEAKIVPPATWDSIEGAFSNAGVDVAD 189
Query: 221 NRFWIMTSNPRRLSGKFYEIFNK--PLDDWKRFQIDTRT---VEGIDPSFHEGIIARYGL 275
N + S P SG+FY+I + +DW + I ++ + +++G
Sbjct: 190 NAYAFAMSTPGAPSGRFYDIHRRAPGYEDWWTRHVTLEEAIASGRISRAWADQRRSQWGS 249
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP------CPDPYAPLIMGCDIAEEGG 329
DS V V G+F D DS IPL +E A+ R P P PL G D+ GG
Sbjct: 250 DSAVFHNRVLGEFHASDEDSVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDVGR-GG 308
Query: 330 DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
D TV+ R G + L + D T I + R IID GA D L
Sbjct: 309 DETVLAARDGWAVT-LETNRRRDTMATVGLI-----QAREGRAIIDVIGLGAGVFDRLRE 362
Query: 390 LGYHVYRVLGQKRAVDLEF-----CRNRRTELHVKMADWLE-----FASLINHSGLIQNL 439
LG G A + N R+ + + + L+ +L +I +L
Sbjct: 363 LGTRPLAYTGSAGATVRDRSGKFGFTNTRSAAYWNLRELLDPAFDPVLALPPDDLMISDL 422
Query: 440 KSLKSFIVPNT--GELAIESKRV---KGAKSTDYSDGLMYT 475
+ + V ++ +E K + +S D D + +
Sbjct: 423 TT-PHWEVTTGVPPKIKVEPKDKVVERLGRSPDRGDAIAMS 462
>gi|323516996|gb|ADX91377.1| hypothetical protein ABTW07_0941 [Acinetobacter baumannii
TCDC-AB0715]
gi|323518424|gb|ADX92805.1| hypothetical protein ABTW07_2381 [Acinetobacter baumannii
TCDC-AB0715]
Length = 663
Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats.
Identities = 89/431 (20%), Positives = 154/431 (35%), Gaps = 51/431 (11%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLAR 256
Query: 146 LSLHPAPWYSDVL-----HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
L P W +D + + + + +T + +P G+H M + DEA
Sbjct: 257 LKQGPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEA 315
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTR 256
SG D + G LT + +MTS P R +G FYE +K W +
Sbjct: 316 SGVDDAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGE 373
Query: 257 TVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ E +YG D ++ V G+FP + I EE D +
Sbjct: 374 ESPLVSKQSLEEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDH 433
Query: 316 A-PLIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKI 360
++ D+ G D++V+V+ RR V++ ++ D+ KI
Sbjct: 434 QFGYVITVDVGGGVGRDDSVIVVSKVWGESQWGERARRVEVVDIPLCKNRDDILELFAKI 493
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV---DLEFCRNRRTELH 417
+ L+ +Y +++D N G YL+ G V + + + N+R+ +
Sbjct: 494 NELLLQYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAY 553
Query: 418 VKMADWLEFAS-----LINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYS 469
V +A + ++ + L + + + I SK + G KS D
Sbjct: 554 VGLARAIASGRFKIKTKKHNVKIKDQLIHVP-YRFDDFARYKILSKDEMKRMGIKSPDIG 612
Query: 470 DGLMYTFAENP 480
D + F EN
Sbjct: 613 DAFAFLFLENV 623
>gi|299769795|ref|YP_003731821.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
gi|298699883|gb|ADI90448.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
Length = 668
Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats.
Identities = 91/431 (21%), Positives = 153/431 (35%), Gaps = 51/431 (11%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLAR 256
Query: 146 LSLHPAPWYSDVL-----HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
L P W +D + + + + +T + +P G+H M + DEA
Sbjct: 257 LKQGPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEA 315
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTR 256
SG D + G LT + +MTS P R +G FYE +K W +
Sbjct: 316 SGVDDAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGE 373
Query: 257 TVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ E +YG D ++ V G+FP + I EE D +
Sbjct: 374 ESPLVSKQSLEEQRQKYGSRDDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDH 433
Query: 316 A-PLIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKI 360
I+ D+ G D++V+V+ RR V++ ++ D+ KI
Sbjct: 434 QFGYIITVDVGGGVGRDDSVIVISKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKI 493
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV---DLEFCRNRRTELH 417
+ L+ +Y +++D N G YL+ G V + + + N+R+ +
Sbjct: 494 NELLLQYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAY 553
Query: 418 VKMADWLEFAS-----LINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYS 469
V A + ++ + L + + + I SK R G KS D
Sbjct: 554 VGFARAVASGRFKMKTKKHYVKIKDQLIHIP-YRFDDFARYKILSKDEMRRMGIKSPDLG 612
Query: 470 DGLMYTFAENP 480
D + F EN
Sbjct: 613 DAFAFLFLENV 623
>gi|256392042|ref|YP_003113606.1| hypothetical protein Caci_2856 [Catenulispora acidiphila DSM 44928]
gi|256358268|gb|ACU71765.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928]
Length = 484
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 88/479 (18%), Positives = 164/479 (34%), Gaps = 58/479 (12%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
+ P W + + + + A+ + G GK+ + + L W + T P
Sbjct: 24 YLADPARWVDDKLGEYLWSRQVDIATSVRDQRLTAVQSCHGTGKSFVASRLTAWWLDTHP 83
Query: 107 --GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
V+ A + Q+K LWAE++K + + ++ W D + G
Sbjct: 84 PGEAFVVTTAPTGDQVKAILWAEINKAFAKAEARG--TPLPGRINETDWKYDKFLVAFG- 140
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
R S+ P F G H Y + +I DEA G L T +
Sbjct: 141 ---------RKPSDYNPHAFQGIHAKYVL-VILDEACGISKQFWTAALAIATGVHCRI-- 188
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE--------------GIDPSFHEGII 270
+ NP F ++ W +I R + ++ +
Sbjct: 189 LAIGNPDDPGSHFAQVCKSDR--WNMIKIAARDTPNFTGEEVPDDLADMLVSQAYVLDMA 246
Query: 271 ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP----CPDPYAPLIMGCDIAE 326
+G +S + +V +FP D + L+ + A REP PD P+ +G D+
Sbjct: 247 EEFGPESPIYLSKVDAEFPSDASDGVVRLSKL-MACTREPVHPYAPDRLVPVELGVDLGA 305
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
GGD T + RRG + + D + I + + + +D+ G
Sbjct: 306 -GGDETCIRERRGIAAGREWRNREKDSEKVVDHIVRAIRETGATKVKVDSIGIGWGIVGS 364
Query: 387 LEMLG------YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL-EFAS-------LINH 432
L+ V V + + E R+++ ++ L E +
Sbjct: 365 LQARRKQGLHTAEVVGVNVSEASTQPEKYARLRSQIWWEVGRKLSEDGGWDLSQLDTTDR 424
Query: 433 SGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN-PPRSDMDF 487
L+ L + K + + +G + +E K + + +S D +D L+ F P+ +
Sbjct: 425 DRLVSQLTAPK-YDLDASGRIVVEKKEETKKRIGRSPDNADALLLAFYTPSVPKPGIRV 482
>gi|184158505|ref|YP_001846844.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
gi|183210099|gb|ACC57497.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
Length = 663
Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats.
Identities = 87/431 (20%), Positives = 153/431 (35%), Gaps = 51/431 (11%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLAR 256
Query: 146 LSLHPAPWYSDVL-----HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
L P W +D + + + + +T + +P G+H M + DEA
Sbjct: 257 LKQGPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEA 315
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTR 256
SG D + G LT + +MTS P R +G FYE +K W +
Sbjct: 316 SGVDDAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGE 373
Query: 257 TVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ + +YG D ++ V G+FP + I EE D +
Sbjct: 374 ESPLVSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDH 433
Query: 316 A-PLIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKI 360
++ D+ G D++V+V+ RR V++ ++ D+ KI
Sbjct: 434 QFGYVITVDVGGGVGRDDSVIVVSKVWGESQWGERARRVEVVDIPLCKNRDDILELFAKI 493
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV---DLEFCRNRRTELH 417
+ L+ +Y +++D N G YL+ G V + + + N+R+ +
Sbjct: 494 NELLLQYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAY 553
Query: 418 VKMADWLEFAS-----LINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYS 469
V + + ++ + L + + + I SK + G KS D
Sbjct: 554 VGLQRAIASGRFKIKTKKHNVKIKDQLIHVP-YRFDDFARYKILSKDEMKRMGIKSPDIG 612
Query: 470 DGLMYTFAENP 480
D + F EN
Sbjct: 613 DAFAFLFLENV 623
>gi|213156231|ref|YP_002318651.1| phage terminase [Acinetobacter baumannii AB0057]
gi|301346399|ref|ZP_07227140.1| phage terminase [Acinetobacter baumannii AB056]
gi|301594275|ref|ZP_07239283.1| phage terminase [Acinetobacter baumannii AB059]
gi|213055391|gb|ACJ40293.1| phage terminase [Acinetobacter baumannii AB0057]
Length = 663
Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 88/431 (20%), Positives = 156/431 (36%), Gaps = 51/431 (11%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLAR 256
Query: 146 LSLHPAPWYSDVL-----HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
L P W +D + + + + +T + +P G+H M + DEA
Sbjct: 257 LKQGPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEA 315
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTR 256
SG D + G LT + +MTS P R +G FYE +K W +
Sbjct: 316 SGVDDAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGE 373
Query: 257 TVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ + +YG D ++ V G+FP + I EE D +
Sbjct: 374 ESPLVSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDH 433
Query: 316 A-PLIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKI 360
++ D+ G D++V+V+ RR V++ ++ D+ KI
Sbjct: 434 QFGYVITVDVGGGVGRDDSVIVVSKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKI 493
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV---DLEFCRNRRTELH 417
+ L+ +Y +++D N G YL+ G V + + + N+R+ +
Sbjct: 494 NELLLQYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAY 553
Query: 418 VKMADWL-----EFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYS 469
V +A + + + ++ + L + + + I SK + G KS D
Sbjct: 554 VGLARAIANGRFKIKTKKHNVKIKDQLIHVP-YRFDDFARYKILSKDEMKRMGIKSPDIG 612
Query: 470 DGLMYTFAENP 480
D + F EN
Sbjct: 613 DAFAFLFLENV 623
>gi|332852816|ref|ZP_08434408.1| intein splicing region-containing protein [Acinetobacter baumannii
6013150]
gi|332871045|ref|ZP_08439658.1| intein splicing region-containing protein [Acinetobacter baumannii
6013113]
gi|332729027|gb|EGJ60377.1| intein splicing region-containing protein [Acinetobacter baumannii
6013150]
gi|332731805|gb|EGJ63085.1| intein splicing region-containing protein [Acinetobacter baumannii
6013113]
Length = 663
Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats.
Identities = 88/431 (20%), Positives = 154/431 (35%), Gaps = 51/431 (11%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLAR 256
Query: 146 LSLHPAPWYSDVL-----HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
L P W +D + + + + +T + +P G+H M + DEA
Sbjct: 257 LKQGPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEA 315
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTR 256
SG D + G LT + +MTS P R +G FYE +K W +
Sbjct: 316 SGVDDAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGE 373
Query: 257 TVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ + +YG D ++ V G+FP + I EE D +
Sbjct: 374 ESPLVSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDH 433
Query: 316 A-PLIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKI 360
++ D+ G D++V+V+ RR V++ ++ D+ KI
Sbjct: 434 QFGYVITVDVGGGVGRDDSVIVVSKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKI 493
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV---DLEFCRNRRTELH 417
+ L+ +Y +++D N G YL+ G V + + + N+R+ +
Sbjct: 494 NELLLQYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAY 553
Query: 418 VKMADWLEFAS-----LINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYS 469
V +A + ++ + L + + + I SK + G KS D
Sbjct: 554 VGLARAIASGRFKIKTKKHNVKIKDQLIHVP-YRFDDFARYKILSKDEMKRMGIKSPDIG 612
Query: 470 DGLMYTFAENP 480
D + F EN
Sbjct: 613 DAFAFLFLENV 623
>gi|260551382|ref|ZP_05825582.1| phage terminase [Acinetobacter sp. RUH2624]
gi|260405545|gb|EEW99037.1| phage terminase [Acinetobacter sp. RUH2624]
Length = 663
Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats.
Identities = 88/431 (20%), Positives = 154/431 (35%), Gaps = 51/431 (11%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEIS-----------INLAR 256
Query: 146 LSLHPAPWYSDVL-----HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
L P W +D + + + + +T + +P G+H M + DEA
Sbjct: 257 LKQGPLAWLADYVGYQSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEA 315
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTR 256
SG D + G LT + +MTS P R +G FYE +K W +
Sbjct: 316 SGVDDAVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGE 373
Query: 257 TVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ + +YG D ++ V G+FP + I EE D +
Sbjct: 374 ESPLVSEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDH 433
Query: 316 A-PLIMGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKI 360
++ D+ G D++V+V+ RR V++ ++ D+ KI
Sbjct: 434 QFGYVITVDVGGGVGRDDSVIVVSKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKI 493
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV---DLEFCRNRRTELH 417
+ L+ +Y +++D N G YL+ G V + + + N+R+ +
Sbjct: 494 NELLLQYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAY 553
Query: 418 VKMADWLEFAS-----LINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYS 469
V +A + ++ + L + + + I SK + G KS D
Sbjct: 554 VGLARAIASGRFKIKTKKHNVKIKDQLIHVP-YRFDDFARYKILSKDEMKRMGIKSPDIG 612
Query: 470 DGLMYTFAENP 480
D + F EN
Sbjct: 613 DAFAFLFLENV 623
>gi|216906085|ref|YP_002333619.1| terminase [Abalone shriveling syndrome-associated virus]
gi|216263178|gb|ACJ72002.1| terminase [Abalone shriveling syndrome-associated virus]
Length = 507
Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats.
Identities = 109/470 (23%), Positives = 187/470 (39%), Gaps = 45/470 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQLE ++ + A ++ V A+S G G GKT L+ L +W PG
Sbjct: 50 DWQLEIVDYI-AKFFRKNSDEKHFVCAIAVSGGNGTGKTKLSKALNIWRFCCHPGSRQFI 108
Query: 113 LANSETQLK----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
L NSE Q K T L +SK LS + ++S + + +P +D D
Sbjct: 109 LTNSERQTKRTGFTMLVRRISKLLSCIA-----ALESSAYYYSPAVADKPEVRTN-DMWD 162
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ + ++ +E G H+ M DE++ D + + T+ F T
Sbjct: 163 VTYLLQSSTEA---ALSGLHHPM-MTFSFDESTYFNDHVWQALENMWTQGQVLCF--CTG 216
Query: 229 NPRRLSGKFY-EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR-------YGLDSDVT 280
NP + ++ +FNK L + TR V ++ AR YG
Sbjct: 217 NPSHDNNNYFARLFNKSLHKKDSLWL-TRCVSLLELPLKYRNDARARYIEEHYGKTHPRY 275
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD-PYAPLIMGCDI--AEEGGDNTVVVLR 337
V GQFP+++ + + I EA+ RE + + P+IMG D+ + G + + +R
Sbjct: 276 IASVLGQFPKKNTCNPFDITAISEAMEREVREEFIHHPVIMGIDVSISANNGSASAICVR 335
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-----EMLGY 392
G + L ++ K+ L+++ +P +++DAN G + L E
Sbjct: 336 EGTAVRVLREYRCH-YTEFRIKLLELLQEIKPTIVVVDANGVGFGLYEELHRTLPETSNV 394
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWL--EFASLINHSGLIQNLKSLKSFIVPNT 450
VY V A ++ +EL K ++W E S+ + + L SL +
Sbjct: 395 RVYGVRAHAEAFLKSEYADKMSELAKKSSEWFNNELVSIPKNYQFLNALTSLS--FADAS 452
Query: 451 GELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEG 497
G++ + K + K S D +D TF + +MD+ + Y
Sbjct: 453 GKIKLIGKTDAKKKVDLSMDMADAFFLTFLDGV---EMDWAQGVKDNYLD 499
>gi|134287454|ref|YP_001109621.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
gi|134131876|gb|ABO60570.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
Length = 509
Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 84/457 (18%), Positives = 157/457 (34%), Gaps = 49/457 (10%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
++ H + ++ + + + ++S+G G GKT+ A + LW + + I A +
Sbjct: 34 LKAPTHHQIQMFDSVSKQGSRTSVSSGHGTGKTSGFAIIALWHLLCYYLSNTILTAPKIS 93
Query: 119 QLKTTLWAEVSKWLSLLPNKHW-FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
+ +W E + + + N + + + + + ++ + ++
Sbjct: 94 TVSDGVWKEFADLSTKISNGPQSWIWEYFVI-------ESERVYVRGYKLNWFVIAKSAP 146
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
P+ G H + + + DEASG PD I G LT+ + S P R SG F
Sbjct: 147 RGSPENLAGAHRDW-LLWLADEASGIPDDNFGVITGSLTDE--RNRMCLASQPTRSSGFF 203
Query: 238 YEIFN----KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
YE + W ++ + F +Y + +++V G+FP+
Sbjct: 204 YETHHALSRAEGGPWNNLVFNSEFSPIVSAKFIAEKKLQYTEEE--YQIKVQGRFPENSS 261
Query: 294 DSFIPLNIIEEALNREPC-PDPYAPLIMGCDIAEEG-GDNTVV----VLRRGPV------ 341
+ IE + R PD + ++ D+ G D TV+ V+ RG
Sbjct: 262 KYLVGPQAIEACVGRTVIKPDEHWGWLLPVDVGGGGWRDETVMPALHVIGRGEYGMDARR 321
Query: 342 ---IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR-V 397
I + D + I + +IDA G C L++ G+ YR V
Sbjct: 322 AQLISVPLHSNTQDPAQLHGVIVHAARERSNATAMIDAGGMGLIVCKQLDLDGFSQYRKV 381
Query: 398 LGQKRAVDLEF---CRNRRTELHVKMADWLEFA--SLINH------SGLIQNLKSLKSFI 446
E+ N+R + A + + L++ + F
Sbjct: 382 NWGNPNFAKEYKDRYVNQRAQACCGFARAITEGRFGINPDVPKSFVKKLVKQGSRIPYFW 441
Query: 447 VPNTGELAIESKRVK----GAKSTDYSDGLMYTFAEN 479
I K S D D L + F E+
Sbjct: 442 -DEKARRQIMKKEDMREKENLPSPDVFDALSFAFLED 477
>gi|228924410|ref|ZP_04087639.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835241|gb|EEM80653.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 293
Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 77/283 (27%), Positives = 124/283 (43%), Gaps = 30/283 (10%)
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ NP R SG FY+ N+ D +K ++ + E + +YG SDV RV V
Sbjct: 2 FLCGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVRV 61
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEH 344
G+FP+ + D+FIPL I+E+A + + P L +G D+A G D TV+ R G +
Sbjct: 62 LGEFPKAEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVFK 120
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDA-------IIIDANNTGARTCDYL------EMLG 391
L + K D T + L ++Y I +D + G D L E L
Sbjct: 121 LLNHYKQDTMETAGHVLKLAKEYMAKYKQLKRVDIKVDDSGVGGGVTDRLKEVIKSERLP 180
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE------------FASLINHSGLIQNL 439
+ VY V+ + +D E N E + D LE + N +I
Sbjct: 181 FKVYPVVNNGKPLDDEHYDNAGAEGWAVVRDLLEENMKAFIQGEEPTMEIPNDEKMISQF 240
Query: 440 KSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
S K + + + G++A+E K + +G +S D +D ++ F +
Sbjct: 241 SSRK-YRITSRGKIALERKEEMKKRGLQSPDRADAIVLAFYKP 282
>gi|226227228|ref|YP_002761334.1| hypothetical protein GAU_1822 [Gemmatimonas aurantiaca T-27]
gi|226090419|dbj|BAH38864.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 549
Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats.
Identities = 106/544 (19%), Positives = 177/544 (32%), Gaps = 91/544 (16%)
Query: 13 QKLFDLMWSDEIKLSFSNFVLHFFP----WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLN 68
+ D L ++ L W L W L
Sbjct: 10 SLVIDHSAYRHDPLGWAEVALGVSRETLLW-----SLFDAYGTHEW------DGTPDPLA 58
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
+V + A+++G G GKT L A L+LW ++ P +A Q + +W EV
Sbjct: 59 TVLEAIAKNQWVAVASGTGTGKTFLEAVLLLWWIAVEPDSIATTVATKADQQEKGIWREV 118
Query: 129 SK-WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
++ W E+ +L + PW D T EE G
Sbjct: 119 ARHWPRFQACFPEAELTTLRIRMEPWRGDAWGA-------WGITAAPKAGEESSSAVQGL 171
Query: 188 HNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR---RLSGKFYEIFNKP 244
H + I+ DE G P + ++ T NP G+F E
Sbjct: 172 HAKR-LLILVDETPGVPQPVMTALVNTATGE--ENVIAAFGNPDYQADPLGQFAET---- 224
Query: 245 LDDWKRFQIDTRTVEGI-----------DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+I + +YG++S V + V G P+Q
Sbjct: 225 -KRVTAIRISALDHPNVVLGVERIPGAATRLSIATREDKYGVESGVYQSRVRGIAPEQSA 283
Query: 294 DSFIPLNIIEEALNREPCPDPYA----PLIMGCDIAE-EGGDNTVVVLRRGPVIEHLFDW 348
+ I L A +R A P +G D+A+ E GD V + +G + +
Sbjct: 284 SALIHLAWCVAAADRAESVQHAALALGPKALGVDVAQSENGDKAAVAMGQGARLLSVIAK 343
Query: 349 SKTDLRTTNNKISGLVEKYR--PDAIIIDANNTGARTCDYL------EMLGYHVYRVLGQ 400
+ + ++ L+ P+ + +D GA T ++L E G V R G
Sbjct: 344 ACPNATKLGAEVWQLMRDEGIVPEYVGVDPIGVGAATVNHLDGECEKENAGRSVVRCSGG 403
Query: 401 KRAV----------------DLEFCRNRRTELHVKMADWLEFA--SLINHSGLIQNLKSL 442
+A+ D +N R ++ ++ + L +L L + L ++
Sbjct: 404 AKAMEASSRAADGSAMEWLADANKFKNLRAQMWWQLREDLRNGLIALPRDRELFRELTTV 463
Query: 443 KSFIVPNTGELA-IESK---RVKGAKSTDYSDGLMY-------TFAENPPRSDMDFGRCP 491
+ G + +ESK R + +S D +D ++Y T PP D R P
Sbjct: 464 Q---FDEDGGIVTLESKDDIRKRLGRSPDRADAVVYWNWVRPRTRVNQPPPEGFDVAR-P 519
Query: 492 SYQY 495
Y
Sbjct: 520 IRNY 523
>gi|159897183|ref|YP_001543430.1| hypothetical protein Haur_0654 [Herpetosiphon aurantiacus ATCC
23779]
gi|159890222|gb|ABX03302.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 472
Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats.
Identities = 100/490 (20%), Positives = 169/490 (34%), Gaps = 82/490 (16%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV-FKGAISAGRGIGKTTLNAWLVLWLMS 103
L P ++ E + V + ++ + A +GKT L LV W
Sbjct: 2 LPYAHDPVAYAREVLGEVWWTKQELIARSLLTPPYRTLVKACHKVGKTHLGGGLVNWWYD 61
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
+ V+ A ++ Q++ LW EV + + +S L P +
Sbjct: 62 SFDPGLVLTTAPTDRQVRDLLWKEVR--MQRRGRAGFTGPKSPRLESTPDH--------- 110
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
++ + D+F GHH+ + + I DEA G V E A
Sbjct: 111 --------FAHGFTAKDGDSFQGHHSPHTL-FIFDEAVGVASVFWETAESMFNEGGA--- 158
Query: 224 WIMTSNPR---------RLSGKFYEI----------------FNKPLDDWKRF-QIDT-- 255
W+ NP LSG ++ I P R ++DT
Sbjct: 159 WLAIFNPTDTSSQAYAEELSGGWHVISMSVLEHPNILAELQGLPPPFPSAIRLSRVDTLL 218
Query: 256 ----RTVEGIDPSFHEGIIAR--YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
R + +P I R + + + G++P Q ++ + A +
Sbjct: 219 KKWCRALSPEEPKRATDIHWRDAWYRPGPIAEARLLGRWPSQATNNVWSDGAFQVAESL- 277
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY-- 367
P P +GCD+A G D T + +RRG + + T ++ L +Y
Sbjct: 278 LLPASDEPCELGCDVARYGDDFTEIHVRRGGHSLYHEAANGWSTVETAGRLKQLANEYGR 337
Query: 368 ------RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
R A+ ID + G D GY V G + A D E NRR+EL +A
Sbjct: 338 RCGVDGRAVAVKIDDDGIGGGVVDL--ADGYTFLGVSGARTAYDPEKYPNRRSELWFSVA 395
Query: 422 D-----WLEFASLINHSGLIQNLK---SLKSFIVPNTGELAIESK---RVKGAKSTDYSD 470
+ L F +L + + L+ ++ + G +E K + + +S D D
Sbjct: 396 ERAMEQRLSFVAL--DAETRRELRRQAMAPTWKQDSQGRRVVEPKADTKKRIKRSPDGMD 453
Query: 471 GLMYTFAENP 480
+ +A P
Sbjct: 454 AVNLAYAPAP 463
>gi|322656964|gb|EFY53248.1| DNA packaging protein [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
Length = 411
Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats.
Identities = 77/327 (23%), Positives = 132/327 (40%), Gaps = 30/327 (9%)
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
+ + +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++
Sbjct: 49 SVQETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQY 108
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ +H + L +Y GI + +C+ Y + G H +
Sbjct: 109 WANAVKRHGWLQTYFVLSDTMFYE---RSRKGI----WEVLCKGYRLGNEEALAGEHAAH 161
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------P 244
+ +I DEASG D + G LTE + +M S P R SG FY+ + P
Sbjct: 162 -LLLILDEASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNP 218
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
W +++ + P F + + Y G DS V+V GQFP++ + + +
Sbjct: 219 KGIWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECD 278
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL--------RRGPVIEHLFDWSKT-DLR 354
A R+ + + D+ G D +V+ + +R V + + T D
Sbjct: 279 RAARRKVLLEKNWGWVATADVG-NGRDKSVLNICKVSGHRDKRRVVNFKVMEMPGTMDPL 337
Query: 355 TTNNKISGLV--EKYRPDAIIIDANNT 379
+ I EKY I +DA+
Sbjct: 338 AFADFIYNECTPEKYPNITIAVDADGL 364
>gi|262316909|emb|CBA18135.1| putative terminase B [Paenibacillus phage phiBP]
Length = 248
Score = 252 bits (644), Expect = 9e-65, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 16/242 (6%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
+P+++ E + SV++ + ++ +G+G+GKT L A + LW + P
Sbjct: 23 YRKSPKTFFKEILNFSPDKWQESVSDDIAKYRFVSVRSGQGVGKTALEAAISLWFLCCFP 82
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
V+C A + QL LWAE+SKW S P + W ++
Sbjct: 83 FPRVVCTAPTRQQLNDVLWAEISKWQSQSP---------ILKRILKWTKTKIYM--KNYE 131
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ + RT + +P+ G H Y M I DEASG D I I G L+ M
Sbjct: 132 ERWFATARTAT--KPENMQGFHEDY-MLFIVDEASGVDDRIMAAIFGTLSGDY--NKLFM 186
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
NP + SG F++ N+ ++ ++ E + A+YG SDV RV V G
Sbjct: 187 CGNPTKTSGFFFDSHNRDRAIYRTHRVSCLDSPRTSKENIEMLKAKYGEGSDVWRVRVLG 246
Query: 287 QF 288
+F
Sbjct: 247 EF 248
>gi|111222161|ref|YP_712955.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a]
gi|111149693|emb|CAJ61385.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a]
Length = 535
Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats.
Identities = 92/467 (19%), Positives = 151/467 (32%), Gaps = 59/467 (12%)
Query: 47 GFSAPRSWQLEFMEVV-DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR 105
P W + + V + N K A+ + GK+ + A V + T
Sbjct: 52 YRDEPVRWARDRLGGVHLWSKQQEIINALRVHRKVAVPSCHDAGKSFVAAAAVAHWLDTH 111
Query: 106 PG--ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
P I A + Q++ LW E+ + L+ ++ W D + G
Sbjct: 112 PPGSAFAITTAPTFPQVRAILWREIRRLSRLM------NPPLGRVNQTEWLIDDDLVAFG 165
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
R ++ F G H Y + ++ DEA G P + + T NA
Sbjct: 166 ----------RKPADHDEGGFQGIHAQYPL-VVLDEAGGIPQQLWIAADSIATNENARI- 213
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE--------------GIDPSFHEGI 269
+ NP + F ++ L W I + ++ E
Sbjct: 214 -LAIGNPDDPTSYFAQVC--ELPSWHVITIPAAETPAFTGEQIPDDLRQALLSRAWAEEK 270
Query: 270 IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA---PLIMGCDIAE 326
+G D+ V +V QFP+ I + + + P P + P+ +G D+
Sbjct: 271 RREWGEDNPVYISKVLAQFPKDVAWKVIKASDVAKRRIGRDEPWPASKLRPVCLGVDVG- 329
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
EG D TVV RRG + + I V + IDA G
Sbjct: 330 EGRDWTVVRERRGVQAGREWQARTPEPEQAVKLIGQAVLITGAKTVNIDAGGPGWGIAAA 389
Query: 387 LEML-------GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL------EFASLINHS 433
L G V + ++ + E N R EL + L + + + N
Sbjct: 390 LRGWLKQHKVRGVAVNPIRFGAKSREPEKYLNMRAELWWGVGRLLSEQGGWDLSVMENAD 449
Query: 434 GLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
L + + IESK R + +S D +D L+ FA
Sbjct: 450 DTTAQLLD-PIWREGAGDRIVIESKEELRKRTGRSPDNADALLLAFA 495
>gi|161789175|ref|YP_001595730.1| PacB [Vibrio sp. 0908]
gi|161761461|gb|ABX77106.1| PacB [Vibrio sp. 0908]
Length = 572
Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats.
Identities = 81/438 (18%), Positives = 155/438 (35%), Gaps = 38/438 (8%)
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
+ +N P + ++++G G GK+ L A L L + T P + ANS Q+
Sbjct: 47 FQQIEVINALTPVGARVSVASGHGTGKSHLTAALCLHFIITHPESLCMLTANSLDQVTNV 106
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
+++ + + + + + Q + +Y+ + +T S+ +
Sbjct: 107 VFSYIKRCWVKICQRQPWLEQYFVITAKSFYA-------KGYKGVWQIFGKTCSKGNEEG 159
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
G H M ++ DEASG D + G LTE N ++ S R +G F + +
Sbjct: 160 LAGQHRRDYM-VVVDEASGVSDRAFEVLRGALTEDN--NKMLLISQFTRPTGHFADSQME 216
Query: 244 --PLDDWKRFQIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLN 300
+ +++ ++ F Y G+ S + V G P I +
Sbjct: 217 LAEQGLYTAITLNSEMSPFVNLKFIREKRIEYGGVTSPEYGIRVLGVCPDDASGFLISRS 276
Query: 301 IIEEALNREPCPDPYAPLIMGCDIA-EEGGDNTVVVL---------RRGPVIEHLFDWSK 350
++++ + D+A EG D++V+ + R+ V++ + +
Sbjct: 277 LVDKGFEAVIEFADEWGWVAVADVAGGEGRDSSVLKIGKVCGFGSERQVEVVKAIEAPAD 336
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD---LE 407
D I Y ++ IDA+ G T E LG +V R+ + +
Sbjct: 337 MDGVQFARFIHQETAGYTNISVGIDADGYGLTTAQECEKLGVNVTRIHWGRPPHANSVKQ 396
Query: 408 FCRNRRTELHVKMADWLEFASLINH--------SGLIQNLKSLKSFIVPNTGELAIESKR 459
+ V + + L L H L + + + G I SK+
Sbjct: 397 RFPKEKDFACVMVKEALGTGRLKLHRGETKQFEKKLQKQFVKIP-YEFDELGRWRIFSKK 455
Query: 460 V---KGAKSTDYSDGLMY 474
+G KS D D +
Sbjct: 456 QLRSEGIKSPDIFDATAF 473
>gi|257459276|ref|ZP_05624390.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
gi|257443289|gb|EEV18418.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
Length = 431
Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats.
Identities = 76/318 (23%), Positives = 131/318 (41%), Gaps = 18/318 (5%)
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLS 234
S ERP+ G +I +EA + + + N N + P+ +
Sbjct: 104 SAERPENIEGFGYD---TVILNEAGIILKDPYLWDNAISPMLLDNPNSRAFIGGVPKGKN 160
Query: 235 GKFYEIFNKPL---DDWKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQ 290
KF+++ + + W+ FQ + + + ++A G DSDV R E+ G+F
Sbjct: 161 -KFFDLAQRGMRNEKGWRNFQFSSYDNPLLQKEEIDRLVAELGGADSDVARQEIFGEFLD 219
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK 350
+S L IE A ++ D AP+I D+A EG D +V+ R+G +E L +
Sbjct: 220 TTSNSVFSLAAIEAAFRKQRYFDAGAPVIWALDVAREGDDESVLCKRQGDSVEPLKPYRI 279
Query: 351 TDLRTTNNKISGLVEK--YRPDAIIIDANNTGARTCDYLEMLGYH--VYRVLGQKRAVDL 406
+I G E+ +P AI ID GA D L LG V G +A D
Sbjct: 280 ASTSELAREIYGEYERTDLKPHAIYIDTIGVGAGVFDTLCDLGLRGIVREAKGSFKASDE 339
Query: 407 EFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGA 463
N+R E++ + + L ++ L + L+++ + + K + +
Sbjct: 340 RKYANKRAEMYFNLREKLPLLAIAPDEELKRQLQTIAFY-FDKKERYLLMPKEGIKKEYG 398
Query: 464 KSTDYSDGLMYTFAENPP 481
+S D +D L +F + P
Sbjct: 399 RSPDRADALAMSFFDLCP 416
>gi|292670767|ref|ZP_06604193.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292647388|gb|EFF65360.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 442
Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats.
Identities = 80/376 (21%), Positives = 147/376 (39%), Gaps = 28/376 (7%)
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+A Q K W + + + +P + ++ + Y ++ ++
Sbjct: 63 VAPYRNQAKRVAWEYLKYYTNPIPGR--------VVNESELYIEL----PTRHARSPGAR 110
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL-GILGFLTERNANRFWIMTSNPR 231
+ PD G + +I DE + + I L +R + + P+
Sbjct: 111 LYIIGADHPDALRGIYLDG---VILDEYADIKPELWGGVIRPALADRQG--WAVFIGTPK 165
Query: 232 RLSGKFYEIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ +FYE++ W T + + + A+ + R E+ F
Sbjct: 166 GQN-QFYEMYQHAEKSAGWYSCIYRTDETGVLPAEELKDMQAQ--MTEMEIRQELLCDFT 222
Query: 290 QQDIDSFIPLNIIEEALNREPCPDP--YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
D IP++++ A NR D P+I+G D+A G D TV+ +R+G ++ +
Sbjct: 223 ASASDVVIPIDLVTAAANRLLKDDDVLGQPVILGVDVARFGDDRTVLCVRQGLWLKEVRT 282
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLE 407
++ T +++ + ++ P A IDA GA D L L Y V V + A+D
Sbjct: 283 FTGLSTMETASRVIDCINQHHPHATFIDAGAMGAGVIDRLRQLRYQVSEVNFGEMAMDAA 342
Query: 408 FCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
N R E++ K WLE I + ++ S + TG + +E K + + K
Sbjct: 343 RYANIRAEMYFKCRAWLEAGGAIPQNAELKTELSTVEYKFNPTGRIILEPKDKLKERTGK 402
Query: 465 STDYSDGLMYTFAENP 480
S D +DG + TFA
Sbjct: 403 SPDLADGFVLTFARPV 418
>gi|298387330|ref|ZP_06996883.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|298259999|gb|EFI02870.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length = 500
Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats.
Identities = 93/491 (18%), Positives = 160/491 (32%), Gaps = 88/491 (17%)
Query: 53 SWQL---EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--- 106
W + + +V + A+++G GK + A L M P
Sbjct: 15 DWCAFASDVLRANLDEEQKAVLRSVQKNPMTALASGTSRGKDFVAACAALCFMYLTPEWD 74
Query: 107 -------GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
+ A S+ Q++ + EV + ++
Sbjct: 75 DDGNLIRNTKIALSAPSQRQVENIMTPEVRRLFRNAGILP---------------GRLVA 119
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ D + Y + + + G H M +I EASG + I I G L
Sbjct: 120 NDIRTDYEEYFLTGFKADNKNQEVWSGFHAANVMFVIT-EASGVSETIFSAIEGNL---Q 175
Query: 220 ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP-----------SFHEG 268
N ++ NP +G + +F++D+ + + E
Sbjct: 176 GNSRLLLVFNPNITTGYAANAMKSDR--FAKFRLDSLNATNVTAKREIIPGQVNYEWVED 233
Query: 269 IIARY----------------------GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
+ + +D+ R++V G FP+ D IP IE A
Sbjct: 234 KVKHWCTPITKEEYNEGEGDFLFENNLYRPNDLFRIKVRGMFPKVAEDVLIPYEWIEIAN 293
Query: 307 NREPCPDPYAP---LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL 363
R PY P +G D+A G DN+V R G + + ++ + ++ + G
Sbjct: 294 KRWQENHPYRPRKSCKLGVDVAGMGRDNSVFCPRYGNYVSQFDVF-QSAGKASHMHVVGK 352
Query: 364 VEKYR---PDAIIIDANNTGARTCDYLEMLG----YHVYRVLGQKRAVDLE---FCRNRR 413
Y+ D I ID GA L G + V G K D+ N R
Sbjct: 353 ALSYKRTDRDIIFIDTIGEGAGVYSRLVEQGIRNIFSVKNSQGAKGLHDITGEYSFANMR 412
Query: 414 TELHVKMADWLE----FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKST 466
L+ + DWL+ F ++ + + + G++ IE K + + +S
Sbjct: 413 AYLYWALRDWLDPKNNFFPMLPPCDQFTEEATETKWKFRSDGKILIEPKEEIKKRIKRSP 472
Query: 467 DYSDGLMYTFA 477
DY D L TF
Sbjct: 473 DYMDALSETFY 483
>gi|225155389|ref|ZP_03723881.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
gi|224803845|gb|EEG22076.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
Length = 479
Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 92/451 (20%), Positives = 166/451 (36%), Gaps = 48/451 (10%)
Query: 42 GTPLEGFSA--PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT-LNAWLV 98
GTP P ++ + +++ + + G GKT+ + L
Sbjct: 12 GTPAPHAEKLNPITFAVAVLKLRIYSWQAKIMASVWSGKPTVAATPNGAGKTSVIIVALA 71
Query: 99 LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVL 158
L L+ PG +V+ + + + ++A SL++H A + +
Sbjct: 72 LTLLHEFPGATVVLTSATYRAVCDQIFA------------------SLAVHQAKFSAWKW 113
Query: 159 HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG--MAIINDEASGTPDVINLGILGFLT 216
+ + D + + ++ +R F G H G + II DEA D I +
Sbjct: 114 NDTEINDGQGGRII--GFATDRGGRFEGFHAYPGRPLLIILDEAKSIADDIFVAA----- 166
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
+R + S+ L G+F++ F++ + +FQ I P F E + A+YG D
Sbjct: 167 DRCQPTMLLYISSWGGLFGRFHDAFSQDR--FAQFQAGIADCPHITPEFIEAMRAQYGED 224
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
SD+ R + GQ P+ + F+ + E P + CD AE D V+
Sbjct: 225 SDIYRSMILGQRPKGNETGFVVPFVDYERCESNPPVWQEGTKQVFCDFAET-SDECVIAK 283
Query: 337 RRGPVIEHLFDW-SKTDLRTTNNKISGLVEKYRPDAIII--DANNTGARTCDYLEMLGYH 393
R G + + W + ++ G + + + + +I DA+ TG L + G
Sbjct: 284 RDGNRLSIVDAWIPDGNTAGITDRFEGHLRRLQNEGFVIRGDADGTGHGYITALSLRGIK 343
Query: 394 VYRVLGQKRAVDLEFCRNRRTELHVKMADWLE--FASLINHSGLIQNLKSLKSFIV---- 447
+ V +D + N E A ++ F L + L + L S +
Sbjct: 344 ISGVKNNDAPMDNHYF-NLAAEHWWTFAKKVKSNFWILPHDEVLKRQLCSREEVYRKVGD 402
Query: 448 -----PNTGELAIESKRVKGAKSTDYSDGLM 473
G L + K KS D +D L+
Sbjct: 403 KKVYGREDGRLQLMPKSRLSTKSPDRADALV 433
>gi|283956317|ref|ZP_06373797.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
gi|283792037|gb|EFC30826.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
Length = 430
Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats.
Identities = 74/324 (22%), Positives = 127/324 (39%), Gaps = 21/324 (6%)
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGT-----PDVINLGILGFLTERNANRFW 224
+ S ER + G +I +EA + + + + N
Sbjct: 96 GAVLHMRSAERSENIEGFGYD---LVILNEAGIILKGSKGEYLWYNAIRPMLLDNPKSRA 152
Query: 225 IMTSNPRRLSGKFYEIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTR 281
I+ P+ + FYE+ K L D WK FQ + + + +I G DS+V +
Sbjct: 153 IIGGVPKGKN-LFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEDSEVVK 211
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
E+ G+F L IE A+++ I G D+A G D +V+ R+G
Sbjct: 212 QEIYGEFIDSSSAELFALTEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSVLAKRKG 271
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
+++ + +S+ N+I + +P I ID G D L G V+
Sbjct: 272 FIVDEIKKYSQLGTMELANRILAEYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEA 331
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
A E N+R +++ A L+ L+ L ++++ ++ + + G L I S
Sbjct: 332 NSANSATSNE-YLNKRAQMYFTFAKNLKHMELVKDEELKKDMRMIE-YEYSDKGLLKIVS 389
Query: 458 K---RVKGAKSTDYSDGLMYTFAE 478
K + KS D SD + TF E
Sbjct: 390 KEQLKKNYGKSPDVSDAVALTFFE 413
>gi|153951273|ref|YP_001397540.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|153951467|ref|YP_001398214.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938719|gb|ABS43460.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938913|gb|ABS43654.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 430
Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats.
Identities = 80/325 (24%), Positives = 126/325 (38%), Gaps = 23/325 (7%)
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV------INLGILGFLTERNANRF 223
+ S ER + G +I +EA I L + N
Sbjct: 96 GAVLHMRSAERSENIEGFAYD---LVILNEAGIILKDSKGGYLWYNSIRPMLLD-NPKSR 151
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVT 280
I+ P+ + FYE+ K L D WK FQ + + + +I G SDV
Sbjct: 152 AIIGGVPKGKN-LFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGESSDVV 210
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
R E+ G+F L+ IE A+++ I G D+A G D +V+ R+
Sbjct: 211 RQEIYGEFIDSSSAELFSLSGIENAMSKNSFSTQKMQGENIWGLDVARYGDDKSVLAKRK 270
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVE--KYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
G VI+ L +S+ NKI + + +P I ID G D L G V+
Sbjct: 271 GFVIDELKKYSQLGTIELANKILAEYKQSEEKPKGIFIDTCGLGVGVYDVLLNYGLPVFE 330
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIE 456
A + N+R +++ A L+ L+ L +++ ++ + + G L I
Sbjct: 331 ANSANSATSNQ-YLNKRAQMYFTFAKNLKHMELVKDEELKNDMRRIE-YEYSDKGLLKIV 388
Query: 457 SK---RVKGAKSTDYSDGLMYTFAE 478
SK + KS D SD + TF E
Sbjct: 389 SKEQLKKNYGKSPDLSDAVALTFFE 413
>gi|226940459|ref|YP_002795533.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715386|gb|ACO74524.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 272
Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats.
Identities = 73/265 (27%), Positives = 113/265 (42%), Gaps = 9/265 (3%)
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ + W QID+RTVEG + YG +SD +V V G FP FI
Sbjct: 5 KCGRRFRHRWVARQIDSRTVEGTNKEQIAKWAEDYGEESDFFKVRVRGMFPSMSARQFIS 64
Query: 299 LNIIEEALNREPCPD--PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
+ A R P+ YAP I+ D A EG D V+ LR+G L +K D
Sbjct: 65 ETDVSAAYGRALRPEQYQYAPKILTVDPAWEGDDEFVIGLRQGLSFRVLHTMAKNDNDLV 124
Query: 357 NNK-ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
+ I+ ++ DA+ +DA G + +G V ++D C N+R E
Sbjct: 125 AAQVIARYEDEEGADAVFVDA-GFGTGIVSAGKSMGRDWTLVWFAGNSMDAG-CLNKRAE 182
Query: 416 LHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRV---KGAKSTDYSDGL 472
+ DWL+ I ++++ + G++ IESK+ +G S + +D L
Sbjct: 183 MWRDARDWLKSGGAIPDDPVLRDELQAPEIVPRLDGKIQIESKKEMKARGVPSPNRADAL 242
Query: 473 MYTFAENPPRSD-MDFGRCPSYQYE 496
+ +FA R D +D R S + E
Sbjct: 243 ILSFAYPVTRRDPLDALRNHSERRE 267
>gi|57237579|ref|YP_178593.1| terminase B protein, putative [Campylobacter jejuni RM1221]
gi|57166383|gb|AAW35162.1| terminase B protein, putative [Campylobacter jejuni RM1221]
Length = 430
Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats.
Identities = 74/324 (22%), Positives = 124/324 (38%), Gaps = 21/324 (6%)
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGT-----PDVINLGILGFLTERNANRFW 224
+ S ER + G +I +EA + + + + N
Sbjct: 96 GAVLHMRSAERSENIEGFGYD---LVILNEAGIILKGSKGEYLWYNAIRPMLLDNPKSRA 152
Query: 225 IMTSNPRRLSGKFYEIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTR 281
I+ P+ + FYE+ K L D WK FQ + + + +I G S+V +
Sbjct: 153 IIGGVPKGKN-LFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVK 211
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
E+ G+F L+ IE A+++ I G D+A G D + + R+G
Sbjct: 212 QEIYGEFIDSSSAELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKG 271
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
VI + +S+ NKI + +P I ID G D L G V+
Sbjct: 272 FVIYEIKKYSQLGTIELANKILAEYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEA 331
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
A E N+R +++ L+ L+ L ++++ ++ + + G L I S
Sbjct: 332 NSANSATSNE-YLNKRAQMYFTFTKNLKHMELVKDEELKKDMRMIE-YEYSDKGLLKIVS 389
Query: 458 K---RVKGAKSTDYSDGLMYTFAE 478
K + KS D SD + TF E
Sbjct: 390 KEQLKKNYGKSPDVSDAVALTFFE 413
>gi|315929403|gb|EFV08605.1| phosphatase, Ppx/GppA family [Campylobacter jejuni subsp. jejuni
305]
Length = 430
Score = 236 bits (603), Expect = 5e-60, Method: Composition-based stats.
Identities = 75/324 (23%), Positives = 124/324 (38%), Gaps = 21/324 (6%)
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGT-----PDVINLGILGFLTERNANRFW 224
+ S ER + G +I +EA + + + + N
Sbjct: 96 GAVLHMRSAERSENIEGFGYD---LVILNEAGIILKGSKGEYLWYNAIRPMLLDNPKSRA 152
Query: 225 IMTSNPRRLSGKFYEIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTR 281
I+ P+ + FYE+ K L D WK FQ + + + +I G S+V +
Sbjct: 153 IIGGVPKGKN-LFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVK 211
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
E+ G+F L+ IE A+++ I G D+A G D + + R+G
Sbjct: 212 QEIYGEFIDSSSAELFSLSEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKG 271
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
VI + +S+ NKI + +P I ID G D L G V+
Sbjct: 272 FVIYEIKKYSQLGTIELANKILAEYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEA 331
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
A E N+R +++ A L+ L L ++++ ++ + + G L I S
Sbjct: 332 NSANSATSNE-YLNKRAQMYFTFAKNLKHMELFKDEELKKDMRMIE-YEYSDKGLLKIVS 389
Query: 458 K---RVKGAKSTDYSDGLMYTFAE 478
K + KS D SD + TF E
Sbjct: 390 KEYLKKNYGKSPDVSDAVALTFFE 413
>gi|189460514|ref|ZP_03009299.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
gi|189432758|gb|EDV01743.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
Length = 556
Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 90/510 (17%), Positives = 161/510 (31%), Gaps = 93/510 (18%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--------- 106
E + V + + + ++++G GK + A + + P
Sbjct: 57 REALGVTLDKEQQEILSSVQYNRRTSVASGTARGKDFVAACAAICFLYLTPRWRKNSLGE 116
Query: 107 -----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
V A ++ Q+K + E+S+ + + + L+ + +D
Sbjct: 117 IELVENTKVALTAPTDRQVKNIMMPEISRLFNRAKARGVELIGKLNAYDIRTNND----- 171
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
+ E + + G H + M ++ EA+G D I G L +
Sbjct: 172 ------EWFLTGFKADEHNHEAWSGFHAVHTMFVVT-EATGIGDDTFAAIEGNL---QGD 221
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-------------- 267
++ NP + G + + D W ++++++ T I
Sbjct: 222 SRILLVFNPNKTVGYAAKS--QKGDRWHKYRLNSLTAPNIASKKIIIPGQVDYDWVLDKL 279
Query: 268 -------------------GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
++ D+ R +V G FP+ D D+ IP +EEA R
Sbjct: 280 ENWCEKISPDEIISEMDDFEFEGQWYRPEDLFRKKVLGLFPKVDEDTLIPRQWLEEAHER 339
Query: 309 EPCPDPYAPL-----IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK---TDLRTTNNKI 360
PL I+G D+A G D T VLRR + + D KI
Sbjct: 340 WKQAKGREPLRADLNILGVDVAGMGRDATCYVLRRDNWVASFDTHNSGGVADHMKVAGKI 399
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDY---LEMLGYHVYRVLGQKRAVDL----------- 406
+ + ID GA LE +++ + A
Sbjct: 400 MVARRQNIGLYVSIDTIGEGAGVYSRCVELEDEPHYILSCKYSESAKTPNGRELSDITGQ 459
Query: 407 EFCRNRRTELHVKMADWL----EFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---R 459
N R L + DWL +++ + F V + G+L IE K +
Sbjct: 460 NKFFNMRAYLFWAVRDWLNPRNNTGAMLPPDDKFDEEATEIKFSVKSNGKLYIEPKEDIK 519
Query: 460 VKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
+ +S D D L TF ++ R
Sbjct: 520 ERLGRSPDKFDALANTFYPVRYAKPINVNR 549
>gi|154175204|ref|YP_001409090.1| Ppx/GppA family phosphatase [Campylobacter curvus 525.92]
gi|112803006|gb|EAU00350.1| phosphatase, Ppx/GppA family [Campylobacter curvus 525.92]
Length = 433
Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats.
Identities = 89/458 (19%), Positives = 164/458 (35%), Gaps = 56/458 (12%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ E A I GR G T A + + G ++
Sbjct: 11 TDWQREVFFKNKAKF-------------TTIEKGRRSGFTKGMANACIEWLI--EGKKIL 55
Query: 112 ----CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
AN + + E+ + + + H L G
Sbjct: 56 WVDTVTANLQRYFERYFVPELKQLPADMWKFH-------------AQDKKLTVGEGYLDM 102
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWI 225
S ERP+ G +I +EA + + + N
Sbjct: 103 R--------SAERPENIEGFGYD---VVILNEAGIILKNSYLWDNAIRPMLLDYPNSRAF 151
Query: 226 MTSNPRRLSGKFYEIFNKPL---DDWKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTR 281
+ P+ + +F+++ ++ + DW FQI + + + +IA G +DSDV +
Sbjct: 152 IGGVPKGKN-RFFDLASRGMRNEKDWVNFQISSFENPLLRKEEIDELIAELGGVDSDVVK 210
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV 341
E+ G+F ++ PL+ IE A + +P A I G D+A +G D +V+ +R G
Sbjct: 211 QEIYGEFLDTTTNALFPLSQIEAAFGKVRAYEPNAVQIWGLDVARDGDDESVLCVREGYH 270
Query: 342 IEHLFDWSKTDLRTTNNKISG--LVEKYRPDAIIIDANNTGARTCDYLEM--LGYHVYRV 397
+++L + +I + + +P+AI ID+ GA T D L LG
Sbjct: 271 VKNLEGFRIASTTELAREIYRRYEMSEKKPEAIFIDSVGVGAGTFDRLCEFGLGAICREA 330
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
+A + N+R E++ + + ++ H L + L+ ++ L +
Sbjct: 331 KASYKATNEAKFANKRAEMYFALKEKFHLLTMNAHEKLKKQLQMIEFQYDRKERYLILPK 390
Query: 458 K--RVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
+ + S DY+D L TF ++ + + Y
Sbjct: 391 DELKKEYGTSPDYADALALTFFDDVMSARRTEEKRQRY 428
>gi|153806881|ref|ZP_01959549.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
gi|149131558|gb|EDM22764.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
Length = 513
Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats.
Identities = 85/492 (17%), Positives = 150/492 (30%), Gaps = 92/492 (18%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--------- 106
+ + ++ A+++G GK + A L M P
Sbjct: 27 RDALCARLDREQQAIIESVQHNPMTAVASGTARGKDFVAACASLCFMYLTPRFNEKGVLV 86
Query: 107 -GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
V A + Q+K + E+ + + K F ++ + D
Sbjct: 87 GNTKVAMTAPTGRQVKNIMTPEIRRLIRAARTKFPFCCP----------GRLVADDIRTD 136
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
+ + + +++ G H M +I EASG +++ I G L N +
Sbjct: 137 YEEWFLTGFKADDNATESWSGFHAANTMFVIT-EASGISEIVYNAIEGNL---QGNSRML 192
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE------------------ 267
+ NP +G + +F++ + E +
Sbjct: 193 IVFNPNITTGYAARAMKSDR--FAKFRLSSLNAENVVKKQIVIPGQVDYEWVKDKVINWC 250
Query: 268 ---------------GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ +D+ RV+V G FP+ D IP IE A
Sbjct: 251 SPIQQTDFNEGEGDFNWEGKLYRPNDLFRVKVLGMFPKVSEDVLIPYEWIEIANRNWQEL 310
Query: 313 D-----PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL---V 364
P +G D+A G DN+V+ R G + FD ++ R + + G+
Sbjct: 311 QASGFIPAKSCKLGVDVAGMGRDNSVLCPRYGNYV-PQFDVHQSAGRADHMHVVGMTIPY 369
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLE------------FCRNR 412
K + ID GA L E N
Sbjct: 370 LKKKGAKAFIDTIGEGAGVYSRLLEE-----EFTNAFSCKYSEGTDGLHDITGEYEFANM 424
Query: 413 RTELHVKMADWL----EFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
R L+ + DWL F + + + + + + G++ IE K + + +S
Sbjct: 425 RAYLYWALRDWLNPKNGFGAALPPCDQLMEEATETKWKFLSNGKVIIEPKEDVKKRIKRS 484
Query: 466 TDYSDGLMYTFA 477
DY D L TF
Sbjct: 485 PDYMDALANTFY 496
>gi|282598783|ref|YP_003359102.1| putative large subunit terminase [Clavibacter phage CMP1]
gi|262212571|gb|ACY35907.1| putative large subunit terminase [Clavibacter phage CMP1]
Length = 872
Score = 229 bits (584), Expect = 8e-58, Method: Composition-based stats.
Identities = 88/428 (20%), Positives = 150/428 (35%), Gaps = 48/428 (11%)
Query: 91 TTLNAWLVLWLMSTRP--GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
T L LV W +S P SV+ A Q+ ++ + +L + + +
Sbjct: 424 TRLAGDLVTWFVSVFPPEETSVMVSAPIREQIDVMMFRYLRDNYNLAIERE--QPLIGEI 481
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
P++ + R +F G H+ + +A++ DEA G P+ +
Sbjct: 482 TKWPYWQVGAPLDKKLVMPK-----RPADGNLISSFQGIHDGH-VAVVLDEAGGLPEDLY 535
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN--KPLDDWKRFQIDTRTVEGIDPSFH 266
+G T +A + NP + + F+E F + W RF I
Sbjct: 536 IGANAVTTNFHARI--LAIGNPDKRNTPFHERFTDTEKFSSWNRFTIGAEDTPNFTGEKI 593
Query: 267 EG------------------IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
+ R V +V G FP+ D +F ++I +
Sbjct: 594 YEDPAKDEDVKKHLVQVSWAVEMRKSARPSVVAAKVDGNFPESDDTTFFDQSVINRGYST 653
Query: 309 EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL---RTTNNKISGLVE 365
E P+ MG DI+ +G D +V + G I +W++ D + +I
Sbjct: 654 EIEPESTDFKYMGVDISYQGEDQSVAYINHGGQIRIADEWNRFDGAEHIESAIRIHNKAC 713
Query: 366 KYRPDAIIIDANNTGARTCDYLEML------GYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
+ + ID TGA L+ML Y + V G R + N R + +
Sbjct: 714 QEGVQEVRIDMAGTGAGVYSNLKMLDQFKDKPYVLIGVNGANRTPNSNRWLNARAWHYDQ 773
Query: 420 MADWLEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLM 473
L + I L + ++ L+ N G+L I K R G S D+ D +
Sbjct: 774 FRTGLITGKIDITITDVDLKKEME-LQPSTFTNRGQLQITRKDDMRKMGISSPDHLDAAI 832
Query: 474 YTFAENPP 481
Y+ + P
Sbjct: 833 YSAIDTTP 840
>gi|303257560|ref|ZP_07343572.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
gi|302859530|gb|EFL82609.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
Length = 330
Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 72/301 (23%), Positives = 118/301 (39%), Gaps = 17/301 (5%)
Query: 195 IINDEASGTPDVIN-LGILGFLTERNANRFWIMTSNPRR--LSGKFYE----IFNKPLDD 247
++ DE + + I L +R + P+ L + Y+ + +K D
Sbjct: 6 VVIDEVAQIKPTLWGEVIRPALADRKGWAAF--IGTPKGINLFSQLYDQALNLMSKGDPD 63
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
W ID + + + + R E F + IP++ I A N
Sbjct: 64 WIAMLYSVEQTHVIDEKELAAL--KVEMSENEFRQEFLCDFSAAQDNGLIPIDDIRAAAN 121
Query: 308 REPCPDPY--APLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ Y APLI G D+A G D +V+ RRG V K D ++I+ +
Sbjct: 122 KFYRESEYMGAPLIYGIDVARFGSDASVIFKRRGLVAFEPIVIRKFDNMALADRIAVEMA 181
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
K +PDA+ ID+ G D L + + V V +A+D E NRR E+ MA W++
Sbjct: 182 KEKPDAVFIDS-GAGQGVIDRLRQMRFDVVEVPFGAQAIDKEQFANRRMEMWWHMAQWIK 240
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPR 482
I ++Q ++ G +E+K + + +S D +D L TFA
Sbjct: 241 QGGAIPPDPVLQGDLGAPTYGYTPKGPKILEAKDKLKERIGRSPDLADALALTFAAPVAP 300
Query: 483 S 483
Sbjct: 301 K 301
>gi|282880015|ref|ZP_06288737.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
5C-B1]
gi|281306129|gb|EFA98167.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
5C-B1]
Length = 459
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 81/466 (17%), Positives = 156/466 (33%), Gaps = 87/466 (18%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRP----------GISVICLANSETQLKTTLWAEVS 129
A+++G GK + A + M P + A + Q + EV+
Sbjct: 2 VAVASGTSRGKDFVAACAAMCFMYLTPRWNINHRLIQNTKIAMTAPTGRQCINIMIPEVA 61
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ +L + ++ + S++ + + G H
Sbjct: 62 RLFRNASVLP---------------GRMLSDGIRTNNAEWFLTAFKASDDNTEAWSGFHA 106
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
M ++ EASG + I G L N ++ NP +G + +K
Sbjct: 107 VNTMFVVT-EASGVSETTFNAIEGNL---QGNSRLLLVFNPNVTTGYAAKAMKSSR--FK 160
Query: 250 RFQIDTRTVEGI-----------DPSFHEGIIARY----------------------GLD 276
+F++++ E + D + + + +
Sbjct: 161 KFRLNSLNAENVIKKKNVIPGQVDYEWVKDKVHNWCELIQKEDFNNGEGDFMFEDSFYRP 220
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL-----IMGCDIAEEGGDN 331
+D+ R++V G FP+ D+ IP +E A +R + + +G D+A G D+
Sbjct: 221 NDLFRIKVLGLFPKASEDTLIPFEWLELAHDRWKKLNAEDFVPRKYARVGIDVAGMGRDS 280
Query: 332 TVVVLRRGPVIEHLFDWS---KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ VLR G + + K D + + + + ++ID GA L
Sbjct: 281 SCFVLRYGNYVPEIKIHQSGGKADHMKVAGEAVQWLVE-KNTKVMIDTIGEGAGVYSRLL 339
Query: 389 MLGY-HVYRVLGQKRAVDLE------FCRNRRTELHVKMADWL----EFASLINHSGLIQ 437
LGY + Y + L N R + + DWL F + +
Sbjct: 340 ELGYDNAYSCKFSEGTKGLHDITGQYEFANMRAYCYWAVRDWLNPKNGFNPALPPCDELD 399
Query: 438 NLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
+ + ++G + IE K + + +S D +D L+ TF N
Sbjct: 400 AELTEVHWSFQSSGSIIIEPKENIKSRLKRSPDRADALISTFYPNT 445
>gi|212703250|ref|ZP_03311378.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
gi|212673294|gb|EEB33777.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
Length = 330
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 64/301 (21%), Positives = 116/301 (38%), Gaps = 23/301 (7%)
Query: 197 NDEASGTPDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD-------W 248
DE + + + L +R + + P+ + F E++ + + W
Sbjct: 1 MDEVAQMKPEVWGEVVQPALADRRGSA--VFIGTPKG-ANLFAELYQRGMAAQAQGDAAW 57
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
+ + + E + L + R E+ F D IPL + EA R
Sbjct: 58 CALSYPVTSTDVLPAEDVERLRRE--LSDNAFRQEMLCDFTASSDDILIPLPDVLEAEAR 115
Query: 309 EPCPDPYA--PLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
+ D P+I+G D+A G D++V+V R+G ++ D ++++ + +
Sbjct: 116 QLAWDDVGGMPVILGVDVARFGADSSVIVRRQGLKVDGPVVMRGLDNMQLADRVAAAIME 175
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF 426
RP A+ IDA G D L LG+ V V + + NRR+E+ + WL+
Sbjct: 176 NRPHAVFIDA-GQGQGVIDRLRQLGHEVIEVPFGGKPLQEGRFANRRSEMWYGLRQWLKS 234
Query: 427 ASLINHSG----LIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
+ G ++ S + G + +E K + + S D +D L TFA
Sbjct: 235 GGKLPDEGDDVPRLRAELSAPLYWYDAAGRMVLEPKDKIKERLGASPDIADALALTFAAP 294
Query: 480 P 480
Sbjct: 295 V 295
>gi|320103661|ref|YP_004179252.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
gi|319750943|gb|ADV62703.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
Length = 553
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 81/407 (19%), Positives = 133/407 (32%), Gaps = 49/407 (12%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
P W ++ G +GK+ L A L LW + T PG
Sbjct: 45 GRPDYW----------EGQRRAALALTRARSVVVATGNAVGKSYLAAGLTLWWLYTHPGS 94
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V+ A S+ L T L+ E+ K L+ + + + + L G
Sbjct: 95 LVVATAPSQGLLGTVLFRELQKALA-ASRRRGLGLPGMVVGSDRGTPFSLRVGPGRRLAA 153
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
C + + G H+ M ++ DEASG LT N + ++
Sbjct: 154 EGWGCLGIATRGVERLAGRHHADLM-VVVDEASGVQPEAWE----ALTSLNPRKLFV-CG 207
Query: 229 NPRRLSGKFYEIFNKPLDDWK-----------RFQIDTRTVEGI----------DPSFHE 267
NP F+++ + L + I + I D F
Sbjct: 208 NPLTPGTVFHKLHQRGLTEASDPSIPDHARGVALTIPSTASPDINLERSPRGLADRGFIR 267
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP---DPYAPLIMGCDI 324
++G S + V G FP + + I +++A + E +P ++GCD+
Sbjct: 268 EAERQWGRGSPLWLSHVEGVFPTVAVHALIEPGWLDQAASLERSQTYENPPGQPVLGCDL 327
Query: 325 AEE-GGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIIIDANNTGA 381
A G D T +V+R I L + I+ L K+ P+ I+ D GA
Sbjct: 328 AAGVGADRTAIVVRDEGGIRELIASDRLAPDEAATLIASLARKHLIAPERILYDGAGLGA 387
Query: 382 RTCDYLEMLG---YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
L G H + G A N R ++ L+
Sbjct: 388 ELTTRLARQGPGFVHARAIFGA--ASGGAGFLNHRAWCGWRLRQRLD 432
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 435 LIQNLKSLKSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAEN 479
L + L++L+ +V +LA+E KR + +S D +D L+ TF+ +
Sbjct: 508 LREELEALRYRLVGT--KLALEDKRETRRRLGRSPDLADALLITFSVD 553
>gi|186682890|ref|YP_001866086.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
gi|186465342|gb|ACC81143.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
Length = 543
Score = 216 bits (551), Expect = 5e-54, Method: Composition-based stats.
Identities = 98/512 (19%), Positives = 176/512 (34%), Gaps = 104/512 (20%)
Query: 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR 105
+ P + + + + + + + A G GK+ + + LV++ +
Sbjct: 28 QYADDPVGFFKNELGIELTNEQTIIAESVRDRPITNVKAAHGTGKSFIASLLVIYFLFCV 87
Query: 106 PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
G+ I A SE Q+K LWAE+ K L K + L +S+ ++
Sbjct: 88 GGV-AITTAPSEDQVKWILWAELRKIHGLHKTKLGGRCDIMQL----LFSETVYA----- 137
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
+ R YSE +F G H + I DEA G I+ G + LT ++ +
Sbjct: 138 ---FGITSRDYSEN---SFQGQHRQKQLL-IEDEADGITPQIDNGFIACLT--GSDNRGL 188
Query: 226 MTSNPRRLSGKFYEI------------FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY 273
NP +F + F+ P W +++ V + P E II
Sbjct: 189 RIGNPVDPQSQFAKTCKLDKRCLTVSAFSHPNVSW-AYELCADGVYRLKPEVAEHIINED 247
Query: 274 G----------------------------------LDSDVTRVEVCGQFPQQDIDSFIPL 299
G S + V G++ + D I L
Sbjct: 248 GEIKPQQEWPPEFPRDRIPGAISIDWIERVRREKFETSAYWKGRVMGEYAEDAADGIILL 307
Query: 300 NIIEEALNREPCPDPYA-------PLIMGCDIAEEGGDNTVVVLRRGPVIEHL-FDWSKT 351
++++A + Y P +G D+ +GGD + L RGPV+ + +K
Sbjct: 308 TLLKQARSLYDQNPQYWDAIAKRYPWRLGLDVG-DGGDPHALALLRGPVLYEVQIHPTKG 366
Query: 352 DLRTT-------NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ---- 400
DL T ++I L Y +I +D GA T L+ GY
Sbjct: 367 DLLDTERAADIAASQIKLLGTGY---SIAVDNTGVGAGTLAKLKKTGYQALPCRFGDVPS 423
Query: 401 -----KRAVDLEFCRNRRTELHVKMADWLEFASL-----INHSGLIQNLKSLKSFIVPNT 450
++ + N + EL+ + + L + N + Q+L + + +
Sbjct: 424 YKKKKQKEEPKQKFTNLKAELYWQFRELLMGGRIAIAPLENEEYVFQDLTATR-YSTNTK 482
Query: 451 GELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
E+ E K + + +S D S+ ++
Sbjct: 483 DEIFCEPKDKTKSRLGRSPD-SEAVIIALTNP 513
>gi|294789575|ref|ZP_06754810.1| putative terminase B protein [Simonsiella muelleri ATCC 29453]
gi|294482512|gb|EFG30204.1| putative terminase B protein [Simonsiella muelleri ATCC 29453]
Length = 516
Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats.
Identities = 78/450 (17%), Positives = 147/450 (32%), Gaps = 63/450 (14%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRP----------GISVICLANSETQLKTTLWAEV 128
K ++ +G G GKT + LW + P G + A + Q+ +W E+
Sbjct: 49 KVSVVSGTGTGKTMSFGRIALWHLLCFPVAKYDGKIEIGSNTYIGAPAIKQVGDGVWKEI 108
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI-----DSKHYSTMCRTYSEERPDT 183
+ + + W ++ + + + + +
Sbjct: 109 TDAVQAMRAN----------RATAWLAEYIVVQAERVYIIDYKATWFITKFAMQQGQSVS 158
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
G H Y + II DEA+G D I G T+ ++ S + G FYE +K
Sbjct: 159 IAGKHRFYQL-IIIDEAAGVSDEHYEVINGTQTQGGNRT--LLASQGVKQGGFFYETHHK 215
Query: 244 ----PLDDWKRFQIDTRTVEGIDPSFHEGIIAR-YGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + + E + + G ++ RV V G+F + + ++ +
Sbjct: 216 LNKENGGNWTALCFSSENSPFVTTEWLENVALQAGGKNTTEYRVRVLGKFAENEHENLLT 275
Query: 299 LNIIEEALNREPCPDPYAP--LIMGCDIAEE--------------GGDNTVVVLRRGPVI 342
IE ++ P + P ++ D+ G D+ RR
Sbjct: 276 RAQIEPRIDTLPIIEKGEPFGWLLLVDVGAGEYRDDSVCIAAKVIGDDDFGENARRVEYE 335
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR 402
+ + ++ I + I++DA G C LE G+ V R+
Sbjct: 336 ANPIITNTKNIHEFRGLIVEKAAQLSNVRILVDAGGIGLELCKMLENDGFDVERINWGNP 395
Query: 403 AV---DLEFCRNRRTELHVKMADWLEFASLINH-------SGLIQNLKSLKS-FIVPNTG 451
E N+R V+ D + ++ + + F T
Sbjct: 396 CFKRAYKERFFNQRACAMVRWRDAIRQGRVLFPKMENGLREKFLMQASRIPYGFTDTGTA 455
Query: 452 ELAIESK---RVKGAKSTDYSDGLMYTFAE 478
I K R +G KS D +D + + F +
Sbjct: 456 RYQIAQKAEMRKRGIKSPDIADAMSFAFLD 485
>gi|315649222|ref|ZP_07902312.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
gi|315275441|gb|EFU38799.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
Length = 189
Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats.
Identities = 65/225 (28%), Positives = 93/225 (41%), Gaps = 45/225 (20%)
Query: 13 QKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNN 72
L DL W D + +F+ ++ F P WQ + M V
Sbjct: 9 TDLLDLYWDDPV--AFAEDMMGF--------------DPDDWQCDVMMDVT--------- 43
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132
+ + ++ +G+G+GKT L A LV+W + RP V+C A ++ QL LW EVSKWL
Sbjct: 44 ---QFPRTSVRSGQGVGKTGLEAALVIWFLCCRPNPKVVCTAPTKQQLHDVLWTEVSKWL 100
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
K+ + ++ + + RT +P+ G H Y
Sbjct: 101 ENSMVKNLLKWTKTKVYMIG------------HEQRWFATARTA--NKPENMQGFHEDY- 145
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
M I DEASG D I ILG L+ A +M NP R SG F
Sbjct: 146 MLFIVDEASGVSDPIMEAILGTLS--GAENKLLMCGNPTRTSGVF 188
>gi|119386463|ref|YP_917518.1| PBSX family phage terminase large subunit [Paracoccus denitrificans
PD1222]
gi|119377058|gb|ABL71822.1| phage terminase, large subunit, PBSX family [Paracoccus
denitrificans PD1222]
Length = 441
Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats.
Identities = 88/424 (20%), Positives = 153/424 (36%), Gaps = 30/424 (7%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ T PG+S ICL + + L +++ + + + L
Sbjct: 26 GGRGSGKSWDRAMHMIVRHLTEPGLSSICLRDVQKSLDQSVFKLLVETAARLGVAEAIR- 84
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
P SD + + G ++ M ++ E + G +EA+
Sbjct: 85 --------PVESDRIIRTPGNGIIAFNGMNE-FNAENIKSLEGFD-----IAWWEEAATA 130
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI---DTRTVEG 260
+ L + + ++ T NPR S + + + + R
Sbjct: 131 GQGPLDMLRPTLRKPGSQIWF--TYNPRLRSDPVDVMMRQDARFADSRTVVEANWRDNPF 188
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
P E + D R G + + FI ++ EA+ R+P L++
Sbjct: 189 RGPELEEERLLDLAGDEARYRHIWEGDYEAESDMQFIGGGLVREAMARQPFSQIGDELVL 248
Query: 321 GCDIAEEGGDNTVVVLRRGPVI--EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
G D+A G D +V+ RRG E D ++ +++ PD + ID
Sbjct: 249 GVDVARFGDDRSVIWARRGRDAQTELPIIMKGADTMAVAARVMAEIDRLHPDGVFIDEGG 308
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAV----DLEFCRNRRTELHVKMADWLEFASLINHSG 434
G D +GY V V +A + CRN+R ++ M +WL I S
Sbjct: 309 VGGGVIDRCRQMGYSVVGVNFGGKADRAIEGVPKCRNKRAQMWATMREWLRSGGCIPDSR 368
Query: 435 LIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN-PPRSDMDFGRC 490
++ + + + IE K + +G S D +D L TFA PRS
Sbjct: 369 DLEMDLTGPLYSFDVNNAIEIEKKSDMKKRGVSSPDEADALALTFAYPVVPRSIQRQQEA 428
Query: 491 PSYQ 494
+ +
Sbjct: 429 RAQE 432
>gi|284162607|ref|YP_003401230.1| hypothetical protein Arcpr_1511 [Archaeoglobus profundus DSM 5631]
gi|284012604|gb|ADB58557.1| protein of unknown function DUF264 [Archaeoglobus profundus DSM
5631]
Length = 435
Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats.
Identities = 91/449 (20%), Positives = 162/449 (36%), Gaps = 68/449 (15%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
S P ++ F++ + + + AGR GKT A ++ T PG
Sbjct: 13 SDPVTFAKVFLDWGAHPAQAQILRDRHQF--ITVVAGRRFGKTECMAVSAIYYALTNPGS 70
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
+A S Q ++ ++ ++LS ++ P++ H DS
Sbjct: 71 IQFVIAPSYDQ-SNIMFGQIVQFLSKSI----LGCMIRRIYKTPFH----HIIFKNDS-- 119
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV-INLGILGFLTERNANRFWIMT 227
+ S +P+ GH II DEA+ PD I+ I L + N + WI
Sbjct: 120 ---VIHARSASKPEFLRGHKA---HRIILDEAAFIPDDVISNIIEPMLADYNGS--WIKI 171
Query: 228 SNPRRLSGKFYEIFNK----PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P + FY+ + K D+ ++ + I F E YG +S + R E
Sbjct: 172 GTPFGKN-HFYDTYLKGQSPDFPDYSSYRFPSTVNPHISHEFIEKKKREYGENSIIFRTE 230
Query: 284 VCGQFPQQ------------DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
+F + ++D+ I L E ++++ ++GCD+A+
Sbjct: 231 YLAEFVEDQNAVFRWADIQKNVDNSIELIDSAENVSKQ--------YVIGCDLAKYQDYT 282
Query: 332 TVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP---DAIIIDANNTGARTCDYLE 388
+VVL L + + + R I L E YR ++ID+ G + L+
Sbjct: 283 VIVVLDVTEKPYKLVHFERFNRRPYAEVIMRLKELYRRFNYAKVLIDSTGVGDPVLEDLQ 342
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL--INHSGLIQNLKSLKSFI 446
+G Y V K V L ++ LE + L++ L+ + +
Sbjct: 343 DVGAEGY-VFTPKSKVQLIQ----------RLQAALENGEIRYPYIEELVKELQFFE-YQ 390
Query: 447 VPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ TG + +E + DY L
Sbjct: 391 LTRTG-IKME---ARQGFHDDYVIALALA 415
>gi|168704975|ref|ZP_02737252.1| hypothetical protein GobsU_35915 [Gemmata obscuriglobus UQM 2246]
Length = 519
Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 84/507 (16%), Positives = 153/507 (30%), Gaps = 94/507 (18%)
Query: 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV-FKGAISAGRGIGKTTLNAWLVLWLMST 104
+ + P + + ++V + + ++ + A +GK+ L LV W T
Sbjct: 29 KYRTDPAGYARDILKVKWWAKQVEIAEALCKPPYRVLVKASHSVGKSHLAGGLVNWWYDT 88
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
R + A ++ Q+K LW EV + P +M L P +
Sbjct: 89 RFPGVCLTTAPTDRQVKDVLWKEVRRQRRKRPGFVGPKMPRLESDPTHF----------- 137
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
++ +F G H + +I DEA G + A W
Sbjct: 138 --------AHGFTARDATSFQGQHEA-SILLIFDEAVGIDGDFWEAAESMC--QGAEYGW 186
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID-------------------PSF 265
+ NP + + Y + + W I I
Sbjct: 187 LAIFNPTDTTSRAY-LEEQAGSRWTVIDIPATEHPNIAAELVARPPEYPSAVRLNWLRDR 245
Query: 266 HEGIIAR---------------------YGLDSDVTRVEVCGQFPQQDIDSFIPLNI--I 302
E R + + + ++P + +
Sbjct: 246 LEQWAERIEPGDATPTDIQFPNPDGSPQWWRPGPLADARLLARWPASGCGVWSDPVWRSV 305
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
E A +P P+ + P +GCD+A G D T + +R G V H + D + T ++
Sbjct: 306 ERAAP-DPVPERWLP-QIGCDVARFGEDWTELHVRCGNVSLHHEAHNGWDTKRTTERLKQ 363
Query: 363 LVEKYRPDAIIIDANNT---------------GARTCDYLEMLGYHVYRVLGQKRAVDLE 407
+ ++ A + G + G++ V A D E
Sbjct: 364 MCGEWAQWATQLRDRGADPIDPRRIPVKVDDDGVGGGVTDQRGGFNFQAVSSASNANDKE 423
Query: 408 FCRNRRTELHVKMADWLEFAS-----LINH--SGLIQNLKSLKSFIVPNTGELAIESK-- 458
NRR+EL +AD + L H L + ++ + G +E K
Sbjct: 424 AYPNRRSELWFTVADRAKRGELFLSNLPAHVRQELKRQ-AMAPTYKLDAAGRRVVEPKED 482
Query: 459 -RVKGAKSTDYSDGLMYTFAENPPRSD 484
+ + +S D D + + E R
Sbjct: 483 TKERIGRSPDGMDAVNLAYYEPSGRGG 509
>gi|320091491|gb|ADW08983.1| terminase-like protein [Clavibacter phage CN77]
Length = 414
Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/393 (18%), Positives = 137/393 (34%), Gaps = 60/393 (15%)
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
G ++ + R ++ TF G + DEA G P + G +T
Sbjct: 11 KYKKMDGSGNEAIAFGKRPTDQDIVSTFQGT-RKLRTFVALDEAGGVPPELFTGAEAVMT 69
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKP--LDDWKRFQIDTRTVEGIDPS---------- 264
+++ + NP +F+ IF P +D+W F I + +
Sbjct: 70 GQDSKI--VAIGNPDSRGTEFHRIFTVPALMDEWNTFTISAYDLPTVTGEVVYPDHPEKQ 127
Query: 265 -------------FHEGIIARYGLDSD-VTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
H+ + + G D +V G+FP + ++F P I+ N
Sbjct: 128 ERMLKGLTSLDWIQHKERVWKVGGKPDGRFLAKVLGEFPGETDNAFFPQEAIDRG-NDTT 186
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD----------------WSKTDLR 354
P +IMG D+A G D++VV +G + WSK +
Sbjct: 187 IDKPEKGIIMGVDLARMGDDDSVVYTNQGGRVRLFKGQVRYSDREGTKTTTGVWSKENTV 246
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG------YHVYRVLGQKRAVDLEF 408
+ ++ + + + +D++ G D LE L Y + + + +
Sbjct: 247 ASARRVHAIAMQIGAKQVRLDSSGIGGAVFDELEQLEEFDGKCYTLVGINNANSSSNNMR 306
Query: 409 CRNRRTELHVKMADWLEFA--SLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAK-- 464
N R E H + D L L ++++ + ++ + G + I K ++
Sbjct: 307 WANIRAENHDNLRDMLIKGYLDLDPEDTMLRDELLVITYKLNLRGAVQITPKDEMKSELN 366
Query: 465 -STDYSDGLMYTFAENPPRSDMDFGRCPSYQYE 496
S D D ++Y+ A+ D G P + E
Sbjct: 367 GSPDRLDAVIYSLADLDHIVD---GPQPGERIE 396
>gi|315122636|ref|YP_004063125.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496038|gb|ADR52637.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 301
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 8/170 (4%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQ----L 56
M+ N E + L + S I + F + + WGE+GTPL PR+WQ L
Sbjct: 1 MNATFQPNIEYDTALLQNVLSPAIAGNPLAFTKYMYRWGEEGTPLANCKGPRAWQTEVFL 60
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E E ++ + +VFK AI++ RGIGKT L AW+ W +STR G +V+ ANS
Sbjct: 61 ELAEFIEKNKEAKRLGKPLQVFKLAIASARGIGKTALVAWITYWFLSTRIGCTVVISANS 120
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQS----LSLHPAPWYSDVLHCSL 162
+ Q KTT +AE+ +W SL N H+FE L+ +PW ++ + +L
Sbjct: 121 DDQCKTTSFAEIRRWHSLAKNAHFFEANIAEALLAGGCSPWQAEPVAKTL 170
>gi|261381054|ref|ZP_05985627.1| phage terminase, large subunit, PBSX family [Neisseria subflava
NJ9703]
gi|284796087|gb|EFC51434.1| phage terminase, large subunit, PBSX family [Neisseria subflava
NJ9703]
Length = 450
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 57/320 (17%), Positives = 116/320 (36%), Gaps = 40/320 (12%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQID 254
+EA D ++ + + + + T NP+ + Y+ F P DD ++
Sbjct: 117 WIEEAENVSDESWNILIPTIRKAGSEIWL--TWNPKNILDPTYQRFVVNPPDDMVDIVVN 174
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--P 312
+ + D D+ R G+ S I I+ A++
Sbjct: 175 YTDNIYLPEVLRLEAESCKARDYDLYRHIWLGEPVADSELSVIKPKWIDAAIDSHIKLGF 234
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
+ I+G D+A+EG D + +LR G V+ + +W D+ + +K+ ++ + D I
Sbjct: 235 EATGQRILGFDVADEGDDASATILRHGSVVIDMDEWRGQDVIYSADKVYLYGQEAKADKI 294
Query: 373 IIDANNTGART-------CDYLEMLGYHVYRVLGQKRA------VDLEFCRNRRTELHVK 419
+ D+ GA ++ +G++ + + A + + N + +
Sbjct: 295 VYDSIGVGAGVKAQFRRKTGKVQTIGFNAGGSVFKPEARYTDDKKNKDMFSNIKAQAWWM 354
Query: 420 MAD-------WLEFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESKR- 459
+ + +EF LI + S N G + +ESK+
Sbjct: 355 VRERFYKTWRAIEFGDTYPIDELISISGSLKDLEYLKAELSRPRVDYDNNGRVKVESKKD 414
Query: 460 --VKGAKSTDYSDGLMYTFA 477
+G S + +D L+ FA
Sbjct: 415 MAKRGIPSPNRADALIMAFA 434
>gi|329122215|ref|ZP_08250807.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
gi|327474100|gb|EGF19511.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
Length = 452
Score = 160 bits (404), Expect = 7e-37, Method: Composition-based stats.
Identities = 65/440 (14%), Positives = 143/440 (32%), Gaps = 63/440 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ T+P I V+C E+ K +S + +
Sbjct: 27 GGRGSGKSFSIARALVLRAYTQP-IRVLCC------------REIQKSISDSVIQMLAD- 72
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q L ++ +G + ++ + + G + +E
Sbjct: 73 QIEMLGLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDVLIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLIM 320
E + D ++ R G+ I I+ A++ ++ I+
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDKVIIKPLWIDAAVDAHKKLGFVAAGRKII 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D G V+ + +W D+ + ++ ++ + I+ D+ G
Sbjct: 246 GFDVADEGSDANANAFVHGSVVLRMDEWRGEDVIGSADRTRLNALEFGANEIVYDSIGVG 305
Query: 381 ART---CDYLEMLGYHVYRVLGQK-----------RAVDLEFCRNRRTELHVKMA----- 421
A L+ + + + N + + ++
Sbjct: 306 AGVKAHYHRLDDKSIRINGFNAGGAVFEPDVEYVYGKTNRDMFANIKAQAWWRLRDRFYK 365
Query: 422 --------------DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
+ + +S I ++ + G + +ESK + +G
Sbjct: 366 TYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGIP 425
Query: 465 STDYSDGLMYTFAENPPRSD 484
S + +D L+ FA P+ D
Sbjct: 426 SPNKADALVMCFA---PKED 442
>gi|229844502|ref|ZP_04464642.1| predicted phage terminase large subunit [Haemophilus influenzae
6P18H1]
gi|229812751|gb|EEP48440.1| predicted phage terminase large subunit [Haemophilus influenzae
6P18H1]
Length = 452
Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats.
Identities = 65/440 (14%), Positives = 144/440 (32%), Gaps = 63/440 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ T+P I V+C E+ K +S + +
Sbjct: 27 GGRGSGKSFSIARALVLRAYTQP-IRVLCC------------REIQKSISDSVIQMLAD- 72
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q L ++ +G + ++ + + G + +E
Sbjct: 73 QIEMLGLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDVLIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLIM 320
E ++ D ++ R G+ I I+ A++ ++ I+
Sbjct: 186 KELMEDMVQMRERDYELYRHVYEGEPVADSDKVIIKPLWIDAAVDAHKKLGFVAAGRKII 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D G V+ + +W D+ + ++ ++ + I+ D+ G
Sbjct: 246 GFDVADEGSDANANAFVHGSVVLRMDEWHGEDVIGSADRTRLNALEFGTNEIVYDSIGVG 305
Query: 381 ART---CDYLEMLGYHVYRVLGQK-----------RAVDLEFCRNRRTELHVKMA----- 421
A L+ + + + N + + ++
Sbjct: 306 AGVKAHYHRLDDKSIRINGFNAGGAVFEPDAEYVYGKTNRDMFANIKAQAWWRLRDRFYK 365
Query: 422 --------------DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
+ + +S I ++ + G + +ESK + +G
Sbjct: 366 TYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGIP 425
Query: 465 STDYSDGLMYTFAENPPRSD 484
S + +D L+ FA P+ D
Sbjct: 426 SPNKADALVMCFA---PKED 442
>gi|260580755|ref|ZP_05848581.1| phage terminase large subunit [Haemophilus influenzae RdAW]
gi|260092572|gb|EEW76509.1| phage terminase large subunit [Haemophilus influenzae RdAW]
Length = 447
Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats.
Identities = 72/442 (16%), Positives = 145/442 (32%), Gaps = 59/442 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C E+ K +S + +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQMLAD- 72
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q L ++ +G + ++ + + G + +E
Sbjct: 73 QIEMLSLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLIM 320
E + D ++ R G+ + I IE A++ + +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D+ G V+ + W D+ + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEMLG--YHVYRVLGQKRAVDLE-----------FCRNRRTELHVKMAD----- 422
A + + L V E N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYKT 365
Query: 423 --WLEFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
+++ + LI + S N G + +ESK + +G S
Sbjct: 366 YRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPS 425
Query: 466 TDYSDGLMYTFAENPPRSDMDF 487
+ +D L+ +A P+S +D
Sbjct: 426 PNMADALVMCYAPTKPKSLLDL 447
>gi|319776448|ref|YP_004138936.1| phage terminase large subunit [Haemophilus influenzae F3047]
gi|319897217|ref|YP_004135412.1| phage terminase large subunit [Haemophilus influenzae F3031]
gi|329123931|ref|ZP_08252483.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
gi|317432721|emb|CBY81084.1| predicted phage terminase large subunit [Haemophilus influenzae
F3031]
gi|317451039|emb|CBY87270.1| predicted phage terminase large subunit [Haemophilus influenzae
F3047]
gi|327468126|gb|EGF13613.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
Length = 447
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 72/442 (16%), Positives = 144/442 (32%), Gaps = 59/442 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C E+ K +S + +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQMLAD- 72
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q L ++ +G + ++ + + G + +E
Sbjct: 73 QIEMLGLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLIM 320
E + D ++ R G+ + I IE A++ + +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D G V+ + W D+ + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEMLG--YHVYRVLGQKRAVDLE-----------FCRNRRTELHVKMAD----- 422
A + + L V E N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKNQDMFSNIKAQSWWALRDRFYKT 365
Query: 423 --WLEFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
+++ + LI + S N G + +ESK + +G S
Sbjct: 366 YRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPS 425
Query: 466 TDYSDGLMYTFAENPPRSDMDF 487
+ +D L+ +A P+S +D
Sbjct: 426 PNMADALVMCYAPTKPKSLLDL 447
>gi|145629503|ref|ZP_01785301.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|145641440|ref|ZP_01797019.1| predicted phage terminase large subunit [Haemophilus influenzae
R3021]
gi|144978346|gb|EDJ88110.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|145273983|gb|EDK13850.1| predicted phage terminase large subunit [Haemophilus influenzae
22.4-21]
gi|309750959|gb|ADO80943.1| Probable bacteriophage terminase, large subunit [Haemophilus
influenzae R2866]
Length = 447
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/442 (16%), Positives = 144/442 (32%), Gaps = 59/442 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C E+ K +S + +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQMLAD- 72
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q L ++ +G + ++ + + G + +E
Sbjct: 73 QVEMLGLQDFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLIM 320
E + D ++ R G+ + I IE A++ + +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D G V+ + W D+ + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEMLG--YHVYRVLGQKRAVDLE-----------FCRNRRTELHVKMAD----- 422
A + + L V E N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKNQDMFSNIKAQSWWALRDRFYKT 365
Query: 423 --WLEFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
+++ + LI + S N G + +ESK + +G S
Sbjct: 366 YRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPS 425
Query: 466 TDYSDGLMYTFAENPPRSDMDF 487
+ +D L+ +A P+S +D
Sbjct: 426 PNMADALVMCYAPTKPKSLLDL 447
>gi|330958838|gb|EGH59098.1| hypothetical protein PMA4326_09820 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 512
Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats.
Identities = 55/239 (23%), Positives = 89/239 (37%), Gaps = 22/239 (9%)
Query: 267 EGIIARYGLDSDVTRVEVC---GQFPQQDIDSF--------IPLNIIEEALNREPC-PDP 314
E + R G S +V ++P +F I + A +E
Sbjct: 253 EQMAWRAGKISSDFANDVDFFNQEYPATPDLAFQKVGHKPLIKTVKVSLARKKEIKHERR 312
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI-I 373
++G D A GGD + + R+G V + + D + + ++ + +
Sbjct: 313 IGAHVVGLDPAR-GGDTSTFIHRQGRVAWGIERNNIPDTMAVVGQAARMLMDDKTIRMMF 371
Query: 374 IDANNTGARTCDYLEMLGY--HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE---FAS 428
ID GA D L LG+ V V A D N+R E+ +MA+W+ S
Sbjct: 372 IDIGGLGAGIYDRLVELGFGDRVTAVNFGSSASDSRKYANKRCEMWGEMAEWIHDDITPS 431
Query: 429 LINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSD 484
+ + L +L S + G+L + K + K +S D D L TFAE D
Sbjct: 432 IPDDDQLHSDLTSAAKDKYTSNGQLKLLPKEDAKKKIGRSPDDGDALALTFAEPVSADD 490
>gi|68250076|ref|YP_249188.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
gi|68058275|gb|AAX88528.1| predicted phage terminase large subunit [Haemophilus influenzae
86-028NP]
Length = 447
Score = 149 bits (377), Expect = 8e-34, Method: Composition-based stats.
Identities = 72/442 (16%), Positives = 144/442 (32%), Gaps = 59/442 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C E+ K +S + +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQMLAD- 72
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q L ++ +G + ++ + + G + +E
Sbjct: 73 QIEMLGLQNFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLIM 320
E + D ++ R G+ + I IE A++ + +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIECAVDAHLKLGFTAKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D+ G V+ + W D+ + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADSNDNAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEMLG--YHVYRVLGQKRAVDLE-----------FCRNRRTELHVKMAD----- 422
A + + L V E N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYKT 365
Query: 423 --WLEFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
++ + LI + S N G + +ESK + +G S
Sbjct: 366 YRAVKHGDVYPDDELISLSSNIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPS 425
Query: 466 TDYSDGLMYTFAENPPRSDMDF 487
+ +D L+ +A P+S +D
Sbjct: 426 PNMADALVMCYATTKPKSLLDL 447
>gi|301170180|emb|CBW29784.1| predicted phage terminase large subunit [Haemophilus influenzae
10810]
Length = 447
Score = 147 bits (372), Expect = 3e-33, Method: Composition-based stats.
Identities = 70/442 (15%), Positives = 141/442 (31%), Gaps = 59/442 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C E+ K +S + +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQMLADQ 73
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + S+ +T + + G + +E
Sbjct: 74 VEMLGLQDFFDVQKTQIIEQNGSRFTFAGLKT-NITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLIM 320
E + D ++ R G+ + I IE A++ + +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D+ G V+ + W + + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGYVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEMLG--YHVYRVLGQKRAVDLE-----------FCRNRRTELHVKMAD----- 422
A + + L V E N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYKT 365
Query: 423 --WLEFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
+++ + LI + S N G + +ESK + +G S
Sbjct: 366 YRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPS 425
Query: 466 TDYSDGLMYTFAENPPRSDMDF 487
+ +D L+ +A P+S +D
Sbjct: 426 PNMADALVMCYAPTKPKSLLDL 447
>gi|16273317|ref|NP_439561.1| terminase large subunit-like protein [Haemophilus influenzae Rd
KW20]
gi|1175785|sp|P44184|Y1410_HAEIN RecName: Full=Uncharacterized protein HI_1410
gi|1574247|gb|AAC23058.1| predicted coding region HI1410 [Haemophilus influenzae Rd KW20]
Length = 394
Score = 146 bits (369), Expect = 7e-33, Method: Composition-based stats.
Identities = 63/402 (15%), Positives = 133/402 (33%), Gaps = 46/402 (11%)
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
++ E+ K +S + + Q L ++ +G + ++ + +
Sbjct: 1 MFREIQKSISDSVIQMLAD-QIEMLSLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKS 59
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN- 242
G + +E ++ + E + I++ NP+ + Y+ F
Sbjct: 60 MTGID-----VVWVEEGENVSKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVI 112
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P + K ++ + E + D ++ R G+ + I I
Sbjct: 113 HPPERCKSVLVNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWI 172
Query: 303 EEALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
E A++ + +G D+A+EG D+ G V+ + W D+ + N+
Sbjct: 173 EYAVDAHLKLGFTAKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRT 232
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLE----------- 407
+ K++ D II D+ GA + + L V E
Sbjct: 233 NQSAVKFKADLIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQD 292
Query: 408 FCRNRRTELHVKMAD-------WLEFASLINHSGLI------------QNLKSLKSFIVP 448
N + + + D +++ + LI + S
Sbjct: 293 MFSNIKAQSWWALRDRFYKTYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYD 352
Query: 449 NTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
N G + +ESK + +G S + +D L+ +A P+S +D
Sbjct: 353 NNGRVKVESKKDMKKRGIPSPNMADALVMCYAPTKPKSLLDL 394
>gi|68249883|ref|YP_248995.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
gi|68058082|gb|AAX88335.1| predicted phage terminase large subunit [Haemophilus influenzae
86-028NP]
Length = 438
Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/441 (14%), Positives = 152/441 (34%), Gaps = 64/441 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A L++ ++ R + V C + + ++ ++ + L FE+
Sbjct: 12 GGRGSGKSWGVAQLLI-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEEFEV 70
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q +++ S+ + + + + + G + +EA
Sbjct: 71 QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 113
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQIDTRTVEGI 261
+ ++ + + + W+ T NP+ + Y+ F P + + R +I+
Sbjct: 114 SNESWDILIPTIRKERSE-IWV-TFNPKNILDPTYQRFVIAPPKNSFVR-KINYDENPYF 170
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLI 319
+ + D ++ R G+ I IE A++ ++ P I
Sbjct: 171 PETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKI 230
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A++G D+ G V+ + +W D+ + ++ ++ + I+ D+
Sbjct: 231 VGFDVADDGVDSNANAFVHGSVVLRVDEWRGEDVIGSADRTRLNALEFGANEIVYDSIGV 290
Query: 380 GART---CDYLEMLGYHVYRVLGQK-----------RAVDLEFCRNRRTELHVKMA---- 421
GA L+ + + + N + + ++
Sbjct: 291 GAGVKAHYHRLDDKSIRINGFNAGGAVFEPDAEYVYGKTNRDMFANIKAQAWWRLRDRFY 350
Query: 422 ---------------DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGA 463
+ + +S I ++ + G + +ESK + +G
Sbjct: 351 KTYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGI 410
Query: 464 KSTDYSDGLMYTFAENPPRSD 484
S + +D L+ FA P+ D
Sbjct: 411 PSPNKADALVMCFA---PKED 428
>gi|329119006|ref|ZP_08247700.1| phage terminase large subunit [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464879|gb|EGF11170.1| phage terminase large subunit [Neisseria bacilliformis ATCC
BAA-1200]
Length = 449
Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats.
Identities = 56/322 (17%), Positives = 105/322 (32%), Gaps = 42/322 (13%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQI 253
+EA ++ + W+ NP+ + Y+ F + P D +
Sbjct: 114 WVEEAEAVTKNSWDVLIPSIRGDKNAEIWVSF-NPKNILDDTYQRFIVHPPKDS-IVLKA 171
Query: 254 DTRTVEGI-DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
+ D ++ D D+ R G+ + I + IE A++
Sbjct: 172 NYDINPHFADTPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAAIDAHEKL 231
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
I+G D+A+EG D VLR G V+ + W D+ + +K+ ++ D
Sbjct: 232 GFSAAGRRILGFDVADEGDDANATVLRHGSVVTDMQQWRGQDVIYSADKVYLYAQEQNVD 291
Query: 371 AIIIDANNTGART-------CDYLEMLGYHVYRVLGQKRA------VDLEFCRNRRTELH 417
I+ D GA ++ LG++ + + A + + N + +
Sbjct: 292 RIVYDNIGVGAGVKAQFRRKNGKVQTLGFNAGGAVYKPDAKYTDDKKNRDMFANIKAQAW 351
Query: 418 VKMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIVPNTGELAIESK 458
+ D + LI S G + ESK
Sbjct: 352 WMVRDRFYKTWRAVHHGDSYPEDQLISLSSSLHELEYLTAELSRPQVDYDQNGRVKAESK 411
Query: 459 ---RVKGAKSTDYSDGLMYTFA 477
+ +G S + +D L+ FA
Sbjct: 412 KDMKKRGIPSPNRADALVMVFA 433
>gi|309379923|emb|CBX21334.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 449
Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 55/322 (17%), Positives = 104/322 (32%), Gaps = 42/322 (13%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQI 253
+EA ++ + W+ NP+ + Y F + P D +
Sbjct: 114 WVEEAEAVTKNSWDVLIPSIRGDKNAEIWVSF-NPKNILDDTYRRFIVHPPQDS-IVLKA 171
Query: 254 DTRTVEGI-DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
+ D ++ D D+ R G+ + I + IE A++
Sbjct: 172 NYDINPHFADTPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAAIDAHEKL 231
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
I+G D+A+EG D VLR G V+ + W D+ + +K+ ++ D
Sbjct: 232 GFQAAGKRILGFDVADEGDDANATVLRHGSVVTDMRQWRGQDVIYSADKVYLYAQEQDID 291
Query: 371 AIIIDANNTGARTC-------DYLEMLGYHVYRVLGQKRA------VDLEFCRNRRTELH 417
I+ D GA ++ LG++ + + A + + N + +
Sbjct: 292 RIVYDNIGVGAGVKAQFRRKRGKVQTLGFNAGGAVYKPDAKYTDDKKNRDMFANIKAQAW 351
Query: 418 VKMAD-------WLEFASLINHSGL------------IQNLKSLKSFIVPNTGELAIESK 458
+ D + L + S G + ESK
Sbjct: 352 WMVRDRFYKTWRAVHHGDSYPEDQLVSLSSSLHELEYLTAELSRPQVDYDQNGRVKAESK 411
Query: 459 ---RVKGAKSTDYSDGLMYTFA 477
+ +G S + +D L+ FA
Sbjct: 412 KDMKKRGIPSPNRADALVMAFA 433
>gi|145629819|ref|ZP_01785613.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|148827544|ref|YP_001292297.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
gi|144977965|gb|EDJ87753.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|148718786|gb|ABQ99913.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
Length = 449
Score = 143 bits (361), Expect = 6e-32, Method: Composition-based stats.
Identities = 65/441 (14%), Positives = 151/441 (34%), Gaps = 64/441 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A L++ ++ R + V C + + ++ ++ + L FE+
Sbjct: 23 GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEEFEV 81
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q +++ S+ + + + + + G + +EA
Sbjct: 82 QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 124
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQIDTRTVEGI 261
+ ++ + + + W+ T NP+ + Y+ F P + + R +I+
Sbjct: 125 SNESWDILIPTIRKERSE-IWV-TFNPKNILDPTYQRFVIAPPKNSFVR-KINYDENPYF 181
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLI 319
+ + D ++ R G+ I IE A++ ++ P I
Sbjct: 182 PETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKI 241
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A++G D+ G V+ + +W D+ + ++ ++ + I+ D+
Sbjct: 242 VGFDVADDGVDSNANAFVHGSVVLRVDEWHGEDVIGSADRTRLNALEFGANEIVYDSIGV 301
Query: 380 GART---CDYLEMLGYHVYRVLGQK-----------RAVDLEFCRNRRTELHVKMA---- 421
GA L+ + + + N + + +
Sbjct: 302 GAGVKAHYHRLDDKSIRINGFNAGGAVFEPDAEYVYGKTNRDMFANIKAQAWWCLRDRFY 361
Query: 422 ---------------DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGA 463
+ + +S I ++ + G + +ESK + +G
Sbjct: 362 KTYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGI 421
Query: 464 KSTDYSDGLMYTFAENPPRSD 484
S + +D L+ FA P+ D
Sbjct: 422 PSPNKADALVMCFA---PKED 439
>gi|319775727|ref|YP_004138215.1| phage terminase large subunit [Haemophilus influenzae F3047]
gi|319896735|ref|YP_004134928.1| phage terminase large subunit [Haemophilus influenzae F3031]
gi|317432237|emb|CBY80589.1| predicted phage terminase large subunit [Haemophilus influenzae
F3031]
gi|317450318|emb|CBY86534.1| predicted phage terminase large subunit [Haemophilus influenzae
F3047]
Length = 449
Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats.
Identities = 65/441 (14%), Positives = 151/441 (34%), Gaps = 64/441 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A L++ ++ R + V C + + ++ ++ + L FE+
Sbjct: 23 GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEDFEV 81
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q +++ S+ + + + + + G + +EA
Sbjct: 82 QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 124
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQIDTRTVEGI 261
+ ++ + + + W+ T NP+ + Y+ F P + + R +I+
Sbjct: 125 SNESWDILIPTIRKERSE-IWV-TFNPKNILDPTYQRFVIAPPKNSFVR-KINYDENPYF 181
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLI 319
+ + D ++ R G+ I IE A++ ++ P I
Sbjct: 182 PETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKI 241
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A++G D+ G V+ + +W D+ + ++ ++ + I+ D+
Sbjct: 242 VGFDVADDGVDSNANAFVHGSVVLRVDEWRGEDVIGSADRTRLNALEFGANEIVYDSIGV 301
Query: 380 GART---CDYLEMLGYHVYRVLGQK-----------RAVDLEFCRNRRTELHVKMA---- 421
GA L+ + + + N + + +
Sbjct: 302 GAGVKAHYHRLDDKSIRINGFNAGGAVFEPDAEYVYGKTNRDMFANIKAQAWWCLRDRFY 361
Query: 422 ---------------DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGA 463
+ + +S I ++ + G + +ESK + +G
Sbjct: 362 KTYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGI 421
Query: 464 KSTDYSDGLMYTFAENPPRSD 484
S + +D L+ FA P+ D
Sbjct: 422 PSPNKADALIMCFA---PKED 439
>gi|260583110|ref|ZP_05850891.1| phage terminase large subunit [Haemophilus influenzae NT127]
gi|260093822|gb|EEW77729.1| phage terminase large subunit [Haemophilus influenzae NT127]
Length = 445
Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats.
Identities = 65/441 (14%), Positives = 151/441 (34%), Gaps = 64/441 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A L++ ++ R + V C + + ++ ++ + L FE+
Sbjct: 19 GGRGSGKSWGVAQLLV-EIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEEFEV 77
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q +++ S+ + + + + + G + +EA
Sbjct: 78 QRNAIYCLKTGSEFMFYGIKNNP------------NKIKSLEGID-----LVWIEEAENV 120
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQIDTRTVEGI 261
+ ++ + + + W+ T NP+ + Y+ F P + + R +I+
Sbjct: 121 SNESWDILIPTIRKERSE-IWV-TFNPKNILDPTYQRFVIAPPKNSFVR-KINYDENPYF 177
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLI 319
+ + D ++ R G+ I IE A++ ++ P I
Sbjct: 178 PETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKI 237
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A++G D+ G V+ + +W D+ + ++ ++ + I+ D+
Sbjct: 238 VGFDVADDGVDSNANAFVHGSVVLRVDEWHGEDVIGSADRTRLNALEFGANEIVYDSIGV 297
Query: 380 GART---CDYLEMLGYHVYRVLGQK-----------RAVDLEFCRNRRTELHVKMA---- 421
GA L+ + + + N + + +
Sbjct: 298 GAGVKAHYHRLDDKSIRINGFNAGGAVFEPDAEYVYGKTNRDMFANIKAQAWWCLRDRFY 357
Query: 422 ---------------DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGA 463
+ + +S I ++ + G + +ESK + +G
Sbjct: 358 KTYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGI 417
Query: 464 KSTDYSDGLMYTFAENPPRSD 484
S + +D L+ FA P+ D
Sbjct: 418 PSPNKADALVMCFA---PKED 435
>gi|145638997|ref|ZP_01794605.1| terminase large subunit-like protein [Haemophilus influenzae
PittII]
gi|145271969|gb|EDK11878.1| terminase large subunit-like protein [Haemophilus influenzae
PittII]
Length = 379
Score = 142 bits (359), Expect = 1e-31, Method: Composition-based stats.
Identities = 56/332 (16%), Positives = 111/332 (33%), Gaps = 40/332 (12%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQ 252
+ +E ++ + E + I++ NP+ + Y+ F P + K
Sbjct: 50 VVWVEEGENVSKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVL 107
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
++ + E + D ++ R G+ + I IE A++ +
Sbjct: 108 VNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKL 167
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
+G D+A+EG D G V+ + W D+ + N+ + K++ D
Sbjct: 168 GFTTKGMKKVGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKAD 227
Query: 371 AIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLE-----------FCRNRRTELH 417
II D+ GA + + L V E N + +
Sbjct: 228 LIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKNQDMFSNIKAQSW 287
Query: 418 VKMAD-------WLEFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK 458
+ D +++ + LI + S N G + +ESK
Sbjct: 288 WALRDRFYKTYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESK 347
Query: 459 ---RVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
+ +G S + +D L+ +A P+S +D
Sbjct: 348 KDMKKRGIPSPNMADALVMCYAPTKPKSLLDL 379
>gi|307251380|ref|ZP_07533296.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306856621|gb|EFM88761.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 384
Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 57/376 (15%), Positives = 121/376 (32%), Gaps = 46/376 (12%)
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
E Q L+ P++ +G + ++ + + G + +E
Sbjct: 2 LEDQIEILNLKPFFEVQKTQIIGRNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEG 56
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVE 259
++ + E + I++ NP+ L Y+ F P + ++ +
Sbjct: 57 ENVSKESWDVLIPTIREDGSQI--IVSFNPKNLLDDTYQRFVINPPERCCSVLVNWQDNP 114
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAP 317
E + D ++ R GQ + I IE+A++ ++
Sbjct: 115 YFPKELMEDMKQMKERDFELYRHVYEGQPVADSDLAIIKPLWIEKAVDAHKKLGFTASGR 174
Query: 318 LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
++G D+A+EG D G V+ + +W D+ + ++ + D I+ D+
Sbjct: 175 KVVGFDVADEGIDANANCFAHGSVVLQVDEWRGDDVIQSAHRTHTNAVMWGVDEIVFDSI 234
Query: 378 NTGART---CDYLEMLGYHVYRVLGQKRAVDL-----------EFCRNRRTELHVKMAD- 422
GA ++ + E N + + + D
Sbjct: 235 GVGAGVKAEYRRMDTKRILCSGFNAGASVFEPDEYYTQDKTNGEMFANIKAQAWWLLRDR 294
Query: 423 ------WLEFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESKR---VK 461
+EF + +I + S N G++ +ESK+ +
Sbjct: 295 FYKTYRAIEFGDVYPVDEMISLSSDIKDLEYLKAELSRPRVDHDNNGKVRVESKKDMRKR 354
Query: 462 GAKSTDYSDGLMYTFA 477
G S + +D L+ FA
Sbjct: 355 GIPSPNKADSLVMCFA 370
>gi|85058727|ref|YP_454429.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84779247|dbj|BAE74024.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 456
Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/456 (16%), Positives = 141/456 (30%), Gaps = 68/456 (14%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P +K A GRG GK+ A L + R G A E ++
Sbjct: 13 QPHRYKIA-KGGRGSGKSW--AIARLLVEIARRGTYRFLCA-----------REFQASMA 58
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+ + + + + + + + + G
Sbjct: 59 DSVIQLIADTIQREGYLKEFEIQKAYIRYLATDSLFMFYGIKNNVTKIKSLEGID----- 113
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQ 252
+EA ++ + + + W+ NP+ + Y+ F PLDD
Sbjct: 114 IAWVEEAEAVTKESWDILIPTIRKPGSE-IWVSF-NPKNILDDTYQRFVVNPLDDICLLT 171
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
+ + D D+ G+ + I I A++
Sbjct: 172 VHYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGEPVADSDLAIIKPLWIAAAVDAHITL 231
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
+P +G D+A+EG D+ ++L G V+ HL W+K D+ + +++ E D
Sbjct: 232 GFEPAGKKRIGFDVADEGEDSNALILSHGSVVMHLETWNKGDVIQSADRVKNYAESVIAD 291
Query: 371 AIIIDANNTGARTCDYLEML------GYHVYRVLGQKRA------VDLEFCRNRRTELHV 418
II D+ GA L + G++ + + A + + N + +
Sbjct: 292 EIIFDSIGVGAGVKARLRRVSRITASGFNAGGGVFKPDAKYVDGKTNKDMFVNLKAQAWW 351
Query: 419 KMADW----LEFASLI----NHSGLIQNLK---------------------SLKSFIVPN 449
+ + I + S ++ L+ S N
Sbjct: 352 GVRERFYNTWHAVEYIKHHPDDSDFVKGLRDDQLISLSSRLSSLDYLKAELSRPWVDYDN 411
Query: 450 TGELAIESK---RVKGAKSTDYSDGLMYTFAENPPR 482
G + +ESK + +G S + +D L+ FA
Sbjct: 412 NGRVKVESKKDMKKRGIPSPNRADALIMAFAPTYKP 447
>gi|149174861|ref|ZP_01853485.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797]
gi|148846198|gb|EDL60537.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797]
Length = 568
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 84/530 (15%), Positives = 153/530 (28%), Gaps = 141/530 (26%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + +E + + + + G GK +I
Sbjct: 57 DDWQWDILESLFD----------LTIRRVFVKGNTGCGKGAAAGIACCTYFHIWNDAKII 106
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+S + + EV KW + K ++ + + +S L
Sbjct: 107 ITRDSVRTAQKIAFGEVDKWWRKMRFKPPGKLLTSGVFDNNQHSISL------------- 153
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + F G H+ + + DEA+ + T+ + ++ SNP
Sbjct: 154 ----ANPQHIEGFRGAHSPH-VFFWFDEAT--APNLEDKYKLANTQA---KKFLALSNPS 203
Query: 232 RLSGKFYEIFNKPLDDW-----------KRFQIDTRTVEGIDPSFHEGIIARYG------ 274
LSG F + F D + + + E +A G
Sbjct: 204 TLSGTFRDSFPVVNPDKTQTIIDQYGNTRCITVSGWECTNVKEKCLEQPVAPIGGIKISD 263
Query: 275 ------------------------------------LDSDVTRVEVCGQFPQQDID-SFI 297
D + V G+FP QD D I
Sbjct: 264 NYYPHGSPIAADDFEKVQPRIPGQTCYDEFMALLNDADPLIRNVYALGKFPDQDPDKQVI 323
Query: 298 PLNIIEE------ALNREPCPDPYAPLIM--------------GCDIA--EEGGDNTVVV 335
+ + E NR I+ G D+A G D +V+
Sbjct: 324 LPDWLIEPVKFWTRWNRLCLRAREQFHILALKLLEQILPVEGFGLDVAASRFG-DASVLA 382
Query: 336 LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA------IIID-ANNTGARTCDYLE 388
+ I + + +D + T + + + D I ID G D L+
Sbjct: 383 VGGRYGIRAIHECQFSDTQQTMSWVLETANSHGVDLEQGIVPIAIDWGGGYGNAVGDPLK 442
Query: 389 MLGYHVYRVLG-QKRAVDLEFCRNRRTELHVKMADWLEFAS--------LINHSGLIQNL 439
+V + G +D + N+R EL+ + A L+ A L ++ L L
Sbjct: 443 KRNVNVIEIHGNASSNLDSKKYANKRAELYGEAARRLDPAGDFRMMPFALPDNQRLKAEL 502
Query: 440 KSLKSFIVPNTG-ELAIESKRVKG--------------AKSTDYSDGLMY 474
+ + + G + I K +G +S D +D ++Y
Sbjct: 503 VAPEKIYAGHDGEKYYITPKGRRGSDANYNGKTLHEILGRSPDRADAVVY 552
>gi|261402679|ref|YP_003246903.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
M7]
gi|261369672|gb|ACX72421.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
M7]
Length = 437
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 74/390 (18%), Positives = 138/390 (35%), Gaps = 47/390 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
++AGR GK+ L +L+++L T+ +A + ++ E+ ++
Sbjct: 50 VAAGRRFGKSKLMCFLLIFLSCTQKDKKFAVIAPYYANAR-IIFKELRTYIEKNKTLQKL 108
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ +P+ ID + S + P + G +I DEA+
Sbjct: 109 ---VKRITESPYMVIEFKTGCIIDFR---------SADNPTSIRG---ESYHLVILDEAA 153
Query: 202 GT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF---NKPLDDWKRFQIDTRT 257
DV+ I L + +A I S P + FYE F + F+ T +
Sbjct: 154 FIKDDVVKYVIKPLLIDYDAP--LIEISTPNGHN-HFYESFLMGENRQNRHISFRFPTWS 210
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI----DSFIPLNIIEEALNREPCPD 313
+ S E I +G DS V + E C +F +I I+ + +
Sbjct: 211 NPFLPKSVIEEIKREFGEDSLVWKQEFCAEFIDDQDAVFKWEYI-QQCIDSNIELLTVGE 269
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT---TNNKISGLVEKYRPD 370
+MG D+A+ +++L L + + + +I L K++P
Sbjct: 270 KGHRYVMGVDLAKYQDYTVIIILDVSENPYKLVYFERFKDKPYSYVVERIKELYIKFKP- 328
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
+ +D+ G + LE ++ Q + +L K+ LE +I
Sbjct: 329 VVCVDSTGVGDPVVEQLEDCNPIPFKFTNQSK-----------MQLITKLQTALERKEVI 377
Query: 431 --NHSGLIQNLKSLKSFIVPNTGELAIESK 458
LI LK + V ++ E+K
Sbjct: 378 FPYIDTLITELKYFRY--VKKKTTISFEAK 405
>gi|241763591|ref|ZP_04761642.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
gi|241367184|gb|EER61538.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
Length = 521
Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats.
Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 26/233 (11%)
Query: 275 LDSDVTRVEVCGQFPQQDID---SFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGD 330
L + + G F D IP ++ A R +P D ++G D A G D
Sbjct: 267 LPEPLRSQMLRGDFSAGAADPAWQLIPTEWVKAAQARWQPRQDKGPMTVLGLDPARGGTD 326
Query: 331 NTVVVLRRGPVIEHLFDWSK---TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
T V R + L D TT + LV I +DA G+ D++
Sbjct: 327 KTSVARRHDCWFDVLISEPGIVTKDGPTTAAFTAPLVR--NGAPIAVDAIGIGSSALDFI 384
Query: 388 EMLGYHVYRVLGQKRAVDLE-----FCRNRRTELHVKMADWL-----EFASLINHSGLIQ 437
+ LG VY V+G +R+ ++ RNRR E++ ++ + L + +L L+
Sbjct: 385 QGLGLLVYAVVGSERSDHMDKAGTMRFRNRRAEMYWRLREALDPTAEQPIALPPDQELLG 444
Query: 438 NLKSLKSFIVPNTGE---LAIESK---RVKGAKSTDYSDGLMYTFAENPPRSD 484
+L +++ + V G+ + I K R +S D D + TF E P D
Sbjct: 445 DLTAVR-YKVVTMGQGAAIQIRDKDEIREALGRSPDKGDSVAMTFCEGIPLLD 496
>gi|303243859|ref|ZP_07330199.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
IH1]
gi|302485795|gb|EFL48719.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
IH1]
Length = 445
Score = 128 bits (322), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/321 (20%), Positives = 121/321 (37%), Gaps = 31/321 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
++AGR GK+ L A+L+++L ST+ +A + ++ E+ K++ +
Sbjct: 56 VAAGRRFGKSKLMAFLLIFLCSTQKNKKYAVIAPFYANAR-IIFRELKKYIEKS---NVL 111
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ +P+ + ID + S + P + G +I DEA+
Sbjct: 112 SRLVKRMVESPYMAIEFKTGCTIDFR---------SADNPTSIRG---ESYHLVILDEAA 159
Query: 202 GT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF---NKPLDDWKRFQIDTRT 257
DV+ I L + +A I S P + FYE F + F+ T T
Sbjct: 160 FIKDDVVKYVIKPLLLDYDAP--LIEISTPNGHN-HFYESFLMGKNKQNRHISFRFPTWT 216
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI----DSFIPLNIIEEALNREPCPD 313
+ + E I G DS V + E C +F + +I I+ + +
Sbjct: 217 NPFLPKNAIEEIKQEVGEDSPVWKQEYCAEFIDNNEAVFNWEYI-QQCIDGTIKLLKSGE 275
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT---TNNKISGLVEKYRPD 370
+MG D+A+ + VL L + + +L +K+ L + +
Sbjct: 276 SGHQYVMGVDLAKFEDYTVITVLDVSVKPYKLVYFERFNLMPYSFVADKVKELYQLFNKP 335
Query: 371 AIIIDANNTGARTCDYLEMLG 391
+ +DA GA + +E L
Sbjct: 336 QVCMDATGPGAAVVEQVESLN 356
>gi|187476925|ref|YP_784949.1| phage terminase large subunit [Bordetella avium 197N]
gi|115421511|emb|CAJ48020.1| Putative phage terminase large subunit [Bordetella avium 197N]
Length = 512
Score = 120 bits (302), Expect = 4e-25, Method: Composition-based stats.
Identities = 75/359 (20%), Positives = 123/359 (34%), Gaps = 60/359 (16%)
Query: 194 AIINDEASGTPDVINLGILG--FLTERNANRFWIMTSNP-RRLSGKFYEIFNKPLDDWKR 250
I+ DEA+ + +LG T+ +MT NP + G++ + P D K
Sbjct: 144 LIVLDEATELREHQARFVLGWNRTTKAGQRCRVLMTFNPPTTVEGRWVVEYFAPWLDPKH 203
Query: 251 FQ------------IDTRTVEGI---------------DPSFHEGIIAR----------- 272
ID + VE +F IA
Sbjct: 204 PHPAKPGELRWFAVIDGKEVEVEGGAPFAHNGETIVPRSRTFIPSRIADNPFLMGTGYES 263
Query: 273 --YGLDSDVTRVEVCGQF---PQQDIDSFIPLNIIEEALNREPCPDPYAPLI-MGCDIAE 326
L + + G F + D IP +E A R PD AP+ +G D+A
Sbjct: 264 VLQSLPEPLRSQMLYGDFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGLDVAR 323
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII-IDANNTGARTCD 385
G D T++ R G + + D + R A+I +D GA D
Sbjct: 324 GGRDKTILARRHGWWFDEPLVYPGKDTPDGPTVAGLAISALRDHAVIHLDVIGVGASPYD 383
Query: 386 YLEMLGYHVYRVLGQKRAVDLE-----FCRNRRTELHVKMADWLE-----FASLINHSGL 435
+L V V + A + NRR+EL +M + L+ +L L
Sbjct: 384 FLVTAKQQVVGVNVAEAACGTDKSGRLRFFNRRSELWWRMREALDPIHNTGIALPPDPRL 443
Query: 436 IQNLKSLKSFIVPNTGELA-IESKRVKGAKSTDYSDGLMYTFAENPPRSDMD-FGRCPS 492
+ +L + + T ++A E K +S D+ + + P R+ ++ G+ S
Sbjct: 444 LADLTAPTWSLSGATLKVASREDIIDKIGRSPDFGSAYVLALMDTPKRAAVEALGQARS 502
>gi|41179386|ref|NP_958694.1| Bbp25 [Bordetella phage BPP-1]
gi|45569518|ref|NP_996587.1| hypothetical protein BMP-1p24 [Bordetella phage BMP-1]
gi|45580769|ref|NP_996635.1| hypothetical protein BIP-1p24 [Bordetella phage BIP-1]
gi|40950125|gb|AAR97691.1| Bbp25 [Bordetella phage BPP-1]
Length = 533
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/237 (21%), Positives = 87/237 (36%), Gaps = 21/237 (8%)
Query: 275 LDSDVTRVEVCGQF---PQQDIDSFIPLNIIEEALNREPCPDPYAPLI-MGCDIAEEGGD 330
L + + G F + D IP +E A R PD AP+ +G D+A G D
Sbjct: 289 LPEPLRSQMLYGDFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGRD 348
Query: 331 NTVVVLRRGPVIEHLFDWSKTDL---RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
NT++ R + + D T + + I +D GA D+L
Sbjct: 349 NTILARRHAMWFDVPLTYPGKDTPDGPTVAGLAIAALRDH--AVIHLDVIGVGASPYDFL 406
Query: 388 EMLGYHVYRVLGQKRAVDLE-----FCRNRRTELHVKMADWLE-----FASLINHSGLIQ 437
V V + A + N R+EL +M + L+ +L L+
Sbjct: 407 AQAKQQVVGVNVAEAARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLA 466
Query: 438 NLKSLKSFIVPNTGELA-IESKRVKGAKSTDYSDGLMYTFAENPPRSDMD-FGRCPS 492
+L + + T ++A E K +S D+ + + P R+ ++ G+ S
Sbjct: 467 DLTAPTWSLSGATLKVASREDIIEKIGRSPDFGSAYVLALMDTPKRAAVEALGQARS 523
>gi|300907068|ref|ZP_07124735.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
84-1]
gi|301304068|ref|ZP_07210185.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
124-1]
gi|300401186|gb|EFJ84724.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
84-1]
gi|300840675|gb|EFK68435.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
124-1]
gi|315257729|gb|EFU37697.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
85-1]
Length = 440
Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/340 (15%), Positives = 105/340 (30%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQ 252
+ +EA + + + + + ++ NP ++ + P +D +
Sbjct: 96 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEDTLIRK 153
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D D + G D + I L+ IE A++ +
Sbjct: 154 INYDENPFLSDTMLKVIEAAKRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 213
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKYR 368
+P +G D+A+ G D V R G V+ +W + +L + + + R
Sbjct: 214 NFEPSGRKRIGFDVADSGADKCANVYRHGSVVYWADEWKAKEDELLKSCQRTYQAALE-R 272
Query: 369 PDAIIIDANNTGARTCDYLEMLG------------YHVYRVLGQKRA----------VDL 406
I+ D+ GA + + R +
Sbjct: 273 DADIVYDSIGVGASAGAKFAEINEDRKRENMNASRINYQRFNAGAGVNEPDYEYIGIPNK 332
Query: 407 EFCRNRRTELHVKMAD-------WLEFASLINHSGLIQNLKSLKSF------------IV 447
+F N + + +AD ++ LI S
Sbjct: 333 DFFANLKAQAWWLVADRFRNTFNAVKNGEQYPVDELISIDSSCPLLEKLKLELTTPHRDF 392
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 393 DKNGRVMVESKKDLAKRDVPSPNVADAFIMAFAPTDTAMD 432
>gi|226940437|ref|YP_002795511.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715364|gb|ACO74502.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 133
Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ AN++TQL+T EV KW L HWF+ QS S+ +K +
Sbjct: 1 MITANTDTQLRTKTSPEVGKWQRLSITSHWFDPQSASIAA----------RDKEHAKTWR 50
Query: 171 TMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+SE + F G HN + +I DEAS D + G LT+ WI N
Sbjct: 51 ADFVPWSEHNTEAFAGLHNKGKRIVLIFDEASAIADKVWEVAEGALTDEETEIIWIAFGN 110
Query: 230 PRRLSG 235
P R G
Sbjct: 111 PTRNIG 116
>gi|229125159|ref|ZP_04254306.1| hypothetical protein bcere0016_54220 [Bacillus cereus 95/8201]
gi|228658294|gb|EEL13987.1| hypothetical protein bcere0016_54220 [Bacillus cereus 95/8201]
Length = 164
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 21/147 (14%)
Query: 354 RTTNNKISGLVEKY--------RPDAIIIDANNTGARTCDYLEM------LGYHVYRVLG 399
+ +KY + I ID G D L+ V +
Sbjct: 1 MYVTGLLIKEAKKYFSWCERTGKRIPIRIDDTGVGGGVTDRLKEVVAENDYPIDVIPINF 60
Query: 400 QKRAVDLEFCRNRRTELHVKMADW-LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK 458
+ + ++ D LEF S+ + LI L S++ + + + G + IE K
Sbjct: 61 ASK--GNAEYACIVSVMYGHFKDNCLEFVSIPDDEDLIAQL-SVRKYQINSDGRIKIEPK 117
Query: 459 ---RVKGAKSTDYSDGLMYTFAENPPR 482
+ +G KS D ++ ++ FA P+
Sbjct: 118 KAMKDRGLKSPDRAEAVVMAFAPFYPK 144
>gi|218290759|ref|ZP_03494841.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
LAA1]
gi|218239297|gb|EED06496.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
LAA1]
Length = 422
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 65/365 (17%), Positives = 125/365 (34%), Gaps = 42/365 (11%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
S P S QL + + H + + F+ A + GR GKT A + PG
Sbjct: 7 SEPTSKQLR-LRLYTPHSGQVALHRSTARFRVA-TCGRRWGKTYACANEIAKWAWEHPGA 64
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
+A + Q + + + ++ + +
Sbjct: 65 MTWWVAPTYRQ----------------------TLTAYRIITRNFHGAIEKATTTHMRIE 102
Query: 169 YSTMCRT--YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL-GFLTERNANRFWI 225
+ + T S E D G ++ DEA+ P L L+++ I
Sbjct: 103 WKSGSITEFRSTENFDALRG---EGLDFLVVDEAAMVPKEAWEAALRPTLSDKAGRA--I 157
Query: 226 MTSNPRRLSGKFYEIFNKP----LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ S P+ + FY ++ + +W+ F+ T I P E AR L SDV R
Sbjct: 158 IVSTPKGRN-WFYHVWARGQDPAFPEWESFRFPTLANPYIPPEEVEE--ARTTLPSDVFR 214
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR-RGP 340
E +F + F + +E P P ++G D+A+ + +VV+
Sbjct: 215 QEYEAEFLEDSAGVFRGIRDCIS--GQEEEPQPGRRYVVGWDVAKHQDFSVLVVMDLERA 272
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
+ + +++ D ++ + ++Y +++DA G + + +G
Sbjct: 273 HVVKMDRFNQVDYALQLERVKHICQRYNNARLLMDATGVGDPLLEQVRRMGIQAEGYSLS 332
Query: 401 KRAVD 405
A
Sbjct: 333 NTAKQ 337
>gi|74311301|ref|YP_309720.1| putative bacteriophage protein [Shigella sonnei Ss046]
gi|73854778|gb|AAZ87485.1| putative bacteriophage protein [Shigella sonnei Ss046]
Length = 473
Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats.
Identities = 50/340 (14%), Positives = 103/340 (30%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-Q 252
+ +EA + + + + + ++ NP ++ + F + +
Sbjct: 128 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEGTLIRK 185
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D D + G D + I L+ IE A++ +
Sbjct: 186 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTL 245
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKYR 368
+P +G D+A+ G D V R G V+ +W + +L + + +
Sbjct: 246 NFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALERE 305
Query: 369 PDAIIIDANNTGARTCDYLEMLG------------YHVYRVLGQ----------KRAVDL 406
D I+ D+ GA + + R +
Sbjct: 306 AD-IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 364
Query: 407 EFCRNRRTELHVKMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIV 447
+F N + + +AD + LI +
Sbjct: 365 DFFANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDF 424
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 425 DRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 464
>gi|188492395|ref|ZP_02999665.1| phage terminase large subunit [Escherichia coli 53638]
gi|188487594|gb|EDU62697.1| phage terminase large subunit [Escherichia coli 53638]
Length = 467
Score = 110 bits (274), Expect = 8e-22, Method: Composition-based stats.
Identities = 50/340 (14%), Positives = 103/340 (30%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-Q 252
+ +EA + + + + + ++ NP ++ + F + +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEGTLIRK 179
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D D + G D + I L+ IE A++ +
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTL 239
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKYR 368
+P +G D+A+ G D V R G V+ +W + +L + + +
Sbjct: 240 NFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALERE 299
Query: 369 PDAIIIDANNTGARTCDYLEMLG------------YHVYRVLGQ----------KRAVDL 406
D I+ D+ GA + + R +
Sbjct: 300 AD-IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 358
Query: 407 EFCRNRRTELHVKMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIV 447
+F N + + +AD + LI +
Sbjct: 359 DFFANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDF 418
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 419 DRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 458
>gi|16759908|ref|NP_455525.1| prophage terminase large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142320|ref|NP_805662.1| prophage terminase large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213583175|ref|ZP_03365001.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213647535|ref|ZP_03377588.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213855100|ref|ZP_03383340.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|25512685|pir||AF0621 probable prophage terminase large chain STY1047 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502201|emb|CAD05440.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29137950|gb|AAO69511.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
Length = 467
Score = 110 bits (274), Expect = 8e-22, Method: Composition-based stats.
Identities = 57/340 (16%), Positives = 110/340 (32%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQ 252
+ +EA + + + + + ++ NP ++ + P +D +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEDTLIRK 179
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D + G D + I L+ IE A++ +
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 239
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P +G D+A+ G D V R G VI +W + +L + + + R
Sbjct: 240 DFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAME-R 298
Query: 369 PDAIIIDANNTGAR-------TCDYLEMLGYHVYRVLGQ---------------KRAVDL 406
I+ D+ GA D + + RV Q +
Sbjct: 299 DADIVYDSIGVGASAGAKFSEINDDRKRENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 358
Query: 407 EFCRNRRTELHVKMADWLE-FASLINHSG--LIQNLKSL----------------KSFIV 447
+F N + + +AD + IN+ L+ L S+
Sbjct: 359 DFFANLKAQAWWLVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPHRDF 418
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 419 DRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 458
>gi|16760783|ref|NP_456400.1| bacteriophage protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|25512494|pir||AE0735 probable bacteriophage protein STY2040 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503080|emb|CAD05583.1| putative bacteriophage protein [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 467
Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats.
Identities = 50/340 (14%), Positives = 103/340 (30%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-Q 252
+ +EA + + + + + ++ NP ++ + F + +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEGTLIRK 179
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D D + G D + I L+ IE A++ +
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTL 239
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKYR 368
+P +G D+A+ G D V R G V+ +W + +L + + +
Sbjct: 240 NFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALERE 299
Query: 369 PDAIIIDANNTGARTCDYLEMLG------------YHVYRVLGQ----------KRAVDL 406
D I+ D+ GA + + R +
Sbjct: 300 AD-IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 358
Query: 407 EFCRNRRTELHVKMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIV 447
+F N + + +AD + LI +
Sbjct: 359 DFFANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDF 418
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 419 DRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 458
>gi|213161040|ref|ZP_03346750.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 421
Score = 109 bits (273), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/340 (16%), Positives = 110/340 (32%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQ 252
+ +EA + + + + + ++ NP ++ + P +D +
Sbjct: 76 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEDTLIRK 133
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D + G D + I L+ IE A++ +
Sbjct: 134 INYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 193
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P +G D+A+ G D V R G VI +W + +L + + + R
Sbjct: 194 DFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAME-R 252
Query: 369 PDAIIIDANNTGAR-------TCDYLEMLGYHVYRVLGQ---------------KRAVDL 406
I+ D+ GA D + + RV Q +
Sbjct: 253 DADIVYDSIGVGASAGAKFSEINDDRKRENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 312
Query: 407 EFCRNRRTELHVKMADWLE-FASLINHSG--LIQNLKSL----------------KSFIV 447
+F N + + +AD + IN+ L+ L S+
Sbjct: 313 DFFANLKAQAWWLVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPHRDF 372
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 373 DRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 412
>gi|324012808|gb|EGB82027.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
60-1]
Length = 441
Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/340 (14%), Positives = 103/340 (30%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-Q 252
+ +EA + + + + + ++ NP ++ + F + +
Sbjct: 96 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEGTLIRK 153
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D D + G D + I L+ IE A++ +
Sbjct: 154 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTL 213
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKYR 368
+P +G D+A+ G D V R G V+ +W + +L + + +
Sbjct: 214 NFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALERE 273
Query: 369 PDAIIIDANNTGARTCDYLEMLG------------YHVYRVLGQ----------KRAVDL 406
D I+ D+ GA + + R +
Sbjct: 274 AD-IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 332
Query: 407 EFCRNRRTELHVKMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIV 447
+F N + + +AD + LI +
Sbjct: 333 DFFANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDF 392
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 393 DRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 432
>gi|194434997|ref|ZP_03067239.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
1012]
gi|194416779|gb|EDX32906.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
1012]
gi|323166781|gb|EFZ52535.1| phage terminase, large subunit, PBSX family [Shigella sonnei 53G]
Length = 447
Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/340 (14%), Positives = 103/340 (30%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-Q 252
+ +EA + + + + + ++ NP ++ + F + +
Sbjct: 102 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEGTLIRK 159
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D D + G D + I L+ IE A++ +
Sbjct: 160 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTL 219
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKYR 368
+P +G D+A+ G D V R G V+ +W + +L + + +
Sbjct: 220 NFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALERE 279
Query: 369 PDAIIIDANNTGARTCDYLEMLG------------YHVYRVLGQ----------KRAVDL 406
D I+ D+ GA + + R +
Sbjct: 280 AD-IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 338
Query: 407 EFCRNRRTELHVKMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIV 447
+F N + + +AD + LI +
Sbjct: 339 DFFANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDF 398
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 399 DRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 438
>gi|213423381|ref|ZP_03356369.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 414
Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/340 (16%), Positives = 110/340 (32%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQ 252
+ +EA + + + + + ++ NP ++ + P +D +
Sbjct: 69 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEDTLIRK 126
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D + G D + I L+ IE A++ +
Sbjct: 127 INYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 186
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P +G D+A+ G D V R G VI +W + +L + + + R
Sbjct: 187 DFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAME-R 245
Query: 369 PDAIIIDANNTGAR-------TCDYLEMLGYHVYRVLGQ---------------KRAVDL 406
I+ D+ GA D + + RV Q +
Sbjct: 246 DADIVYDSIGVGASAGAKFSEINDDRKRENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 305
Query: 407 EFCRNRRTELHVKMADWLE-FASLINHSG--LIQNLKSL----------------KSFIV 447
+F N + + +AD + IN+ L+ L S+
Sbjct: 306 DFFANLKAQAWWLVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPHRDF 365
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 366 DRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 405
>gi|260557981|ref|ZP_05830193.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
gi|260408491|gb|EEX01797.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
Length = 529
Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 31/239 (12%)
Query: 275 LDSDVTRVEVCGQF---PQQDIDSFIPLNIIEEALNREPCPDPYAPLI--------MGCD 323
L + + G F + D IP +E A R + L G D
Sbjct: 280 LPEPLRSQMLYGDFGAGIEDDPWQVIPTEWVEAAQARWKPLEDMRILHRGDFKMDSYGLD 339
Query: 324 IAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR---TTNNKISGLVEKYRPDAIIIDANNTG 380
+A GGDNT+ R G ++ D T+ + V + P I +D G
Sbjct: 340 VARGGGDNTIGFARYGYWYDNPNVLEGKDSPDGPTSASFAVSHVRDHAP--IHVDVIGVG 397
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEF-----CRNRRTELHVKMADWLE-----FASLI 430
A T D+L+ G HV V + A + N R++L + + L+ +L
Sbjct: 398 ASTYDFLKQSGIHVVPVDVRNAATAFDRSGQLSFYNLRSQLWWQFREALDPAYGSTVALP 457
Query: 431 NHSGLIQNLKSLKSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSDMD 486
L+ +L + + + + T ++ +ES+ + +S DY ++ + P R M
Sbjct: 458 PEPKLLADLTAPR-WGLQGT-KIKVESREEIIKRIGRSPDYGSAIINAQIDTPKRHIMQ 514
>gi|293396491|ref|ZP_06640767.1| phage terminase large subunit [Serratia odorifera DSM 4582]
gi|291420755|gb|EFE94008.1| phage terminase large subunit [Serratia odorifera DSM 4582]
Length = 430
Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/343 (15%), Positives = 107/343 (31%), Gaps = 57/343 (16%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQ 252
+ N+EA + + + + + +++ NPR + + P D +
Sbjct: 80 VLWNEEAHAMTEAQWEVLEPTIRKEGSECWFL--FNPRLTTDFVWRNFVVAPPPDTLVRK 137
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + I A D+++ G D ++ I L+ IE A++ +
Sbjct: 138 INYDENPFLSRTIMNVIEAAKARDAEMFEHVYLGMPRTDDDEAIIKLSWIEAAVDAHKAL 197
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKYR 368
+P +G D+A+ G D V G V +W + +L + + + + R
Sbjct: 198 NIEPAGHRRVGFDVADSGADKCANVYAHGSVALWADEWKAREDELMKSCKRTYNVALE-R 256
Query: 369 PDAIIIDANNTGARTCDYLEMLG-------------YHVYRVLGQKRAVDLE-------- 407
AII D+ GA + + ++ + E
Sbjct: 257 EAAIIYDSIGVGASSGSKFAEINEERESASDWNVRTVDYFKFNAGGAVFEPERDYQPGIT 316
Query: 408 ---FCRNRRTELHVKMADWL----------EFASLINHSGLI------------QNLKSL 442
F N + + +AD E LI + S
Sbjct: 317 NKDFFANIKAQAWWLVADRFRNTYNVINGKEKRESFADDQLISIDSACPLLDKLKFELST 376
Query: 443 KSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPR 482
G + +E+K + + S + +D + FA
Sbjct: 377 PKRDFDKNGRVKVETKDDLKKRDIPSPNVADAFIMAFAPIETP 419
>gi|323175059|gb|EFZ60673.1| phage terminase large subunit [Escherichia coli LT-68]
Length = 399
Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/340 (14%), Positives = 103/340 (30%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-Q 252
+ +EA + + + + + ++ NP ++ + F + +
Sbjct: 54 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEGTLIRK 111
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D D + G D + I L+ IE A++ +
Sbjct: 112 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTL 171
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKYR 368
+P +G D+A+ G D V R G V+ +W + +L + + +
Sbjct: 172 NFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALERE 231
Query: 369 PDAIIIDANNTGARTCDYLEMLG------------YHVYRVLGQ----------KRAVDL 406
D I+ D+ GA + + R +
Sbjct: 232 AD-IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 290
Query: 407 EFCRNRRTELHVKMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIV 447
+F N + + +AD + LI +
Sbjct: 291 DFFANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDF 350
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 351 DRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 390
>gi|289581321|ref|YP_003479787.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099]
gi|289530874|gb|ADD05225.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099]
Length = 602
Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 77/512 (15%), Positives = 152/512 (29%), Gaps = 113/512 (22%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVF----KGAISAGRGIGKTTLNAWLVLWLMST 104
+ +W + +E + + + G+GK+ + A + + ++
Sbjct: 22 AGDETWLEDAIEDYLGITVTGAQAQICRGIAANERLLVVTANGLGKSYILAAITIVWLTV 81
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
R + +E ++K T V P + S +
Sbjct: 82 RYPACSFATSGTERKMKRTYCKPVENLHGDARVPL----------PGEYKSRPERIEIDG 131
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA--SGTPDVINLGILGFLTERNANR 222
+ +H+ S + G H Y +AII +EA + + +T+
Sbjct: 132 EPEHFFEAA---SPQDAGELEGVHAAYTLAII-EEADKKDVDAEVLDAMKSLVTDEQDRI 187
Query: 223 FWIMTSNP---------------RRLSGKF-------YEIF------------------- 241
I +NP + K+ ++
Sbjct: 188 --IAIANPPKDETNSIYPILDEQDDPTSKWEVLEFSSFDSHNVQVELGNVDDEKVDGLAS 245
Query: 242 -NKPLDDWKRF-----------------QIDTRTVEGI--------DPSFHEGIIARYGL 275
+K DDW+ + ++D +P F + R+
Sbjct: 246 LHKIQDDWEDYNKEPWPGAETARTLSAPKLDADGNPVFSHSDALEDNPEFRTDLDQRWYR 305
Query: 276 DSDVTRVEVCGQFP--QQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
G P + ++ + A R+ P P G D+A +GGD T
Sbjct: 306 -------RRAGIIPPGGASKNRPFTIDDVNAAWGRDWQPV-GRPQATGIDVARDGGDRTP 357
Query: 334 VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH 393
V+ G V+E ++ D + ++ ++E + + IDA G+ D +
Sbjct: 358 VISVDGDVLEVRYEEPCHDYTAHADDVTDVLEDDPDNPMPIDAVGEGSGFADIMHQRFPE 417
Query: 394 VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSL------KSFIV 447
R A D ++ E + WL+ IN L + L + +
Sbjct: 418 TIRFKSLGVAEDSANYKDCWAEGVALLGKWLQNGGSINDRTLREELLVAARTLEYEETHI 477
Query: 448 PNTGE-----LAIESK---RVKGAKSTDYSDG 471
+ G L + K + + +S DY D
Sbjct: 478 GSRGTNGEDVLKLTPKEKVKERLGRSPDYLDA 509
>gi|213426918|ref|ZP_03359668.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
Length = 374
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 57/340 (16%), Positives = 110/340 (32%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQ 252
+ +EA + + + + + ++ NP ++ + P +D +
Sbjct: 29 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEDTLIRK 86
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D + G D + I L+ IE A++ +
Sbjct: 87 INYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 146
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P +G D+A+ G D V R G VI +W + +L + + + R
Sbjct: 147 DFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAME-R 205
Query: 369 PDAIIIDANNTGAR-------TCDYLEMLGYHVYRVLGQ---------------KRAVDL 406
I+ D+ GA D + + RV Q +
Sbjct: 206 DADIVYDSIGVGASAGAKFSEINDDRKRENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 265
Query: 407 EFCRNRRTELHVKMADWLE-FASLINHSG--LIQNLKSL----------------KSFIV 447
+F N + + +AD + IN+ L+ L S+
Sbjct: 266 DFFANLKAQAWWLVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPHRDF 325
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 326 DRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 365
>gi|332091158|gb|EGI96248.1| phage terminase large subunit [Shigella dysenteriae 155-74]
Length = 346
Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats.
Identities = 50/340 (14%), Positives = 103/340 (30%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-Q 252
+ +EA + + + + + ++ NP ++ + F + +
Sbjct: 1 MLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEGTLIRK 58
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D D + G D + I L+ IE A++ +
Sbjct: 59 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTL 118
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKYR 368
+P +G D+A+ G D V R G V+ +W + +L + + +
Sbjct: 119 NFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALERE 178
Query: 369 PDAIIIDANNTGARTCDYLEMLG------------YHVYRVLGQ----------KRAVDL 406
D I+ D+ GA + + R +
Sbjct: 179 AD-IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 237
Query: 407 EFCRNRRTELHVKMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIV 447
+F N + + +AD + LI +
Sbjct: 238 DFFANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDF 297
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 298 DRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 337
>gi|328952976|ref|YP_004370310.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
11109]
gi|328453300|gb|AEB09129.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
11109]
Length = 466
Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats.
Identities = 74/382 (19%), Positives = 126/382 (32%), Gaps = 58/382 (15%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ +F+ V+ P + + + GK+T A L L PG +
Sbjct: 27 PDPWQQDFL----------VSRPEQALLLCSRQS----GKSTSAAALALHEALFHPGALI 72
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ L+ S Q L+ + + LP+ + + + H S I
Sbjct: 73 LLLSPSLRQ-SQELFRKAAGLYQRLPHAP------AACRTSALRLEFDHGSRIISLPGQE 125
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
R +SE R ++ DEA+ PD + + L S P
Sbjct: 126 ETIRGFSEVR-------------LLVIDEAALVPDELYYAVRPMLAVSRGR--LTALSTP 170
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
G FY + + D W+R+ I I F + L + R E +F
Sbjct: 171 AGKRGWFYHCYTEGGDQWQRYTIPATQCPRISADFLAA--EQRSLPAAWFRAEYFCEF-G 227
Query: 291 QDIDSFIPLNIIEEALNREPCP--------DPYAPLIMGCDIAEEGGDNTVVVLRRGPVI 342
+ + P ++++ A + P P +G D+ + + + ++ R P +
Sbjct: 228 EAANQLFPAHLLQTAQCSQVSPLFAEITPSPPTGTFFIGLDLGQSQDYSALTIIHRSPAL 287
Query: 343 E----HLFDWSKTDLRTTNNKISGLVEKY-------RPDAIIIDANNTGARTCDYLEMLG 391
HL + LRT I V + +I+D GA D L G
Sbjct: 288 PDPPCHLRHLQRFPLRTPYPDIVRQVRELLQQPQIGPNPLLIVDKTGVGAPVVDMLTQAG 347
Query: 392 YHVYRVLGQKRAVDLEFCRNRR 413
+ Y V + R+ R
Sbjct: 348 MNPYAVTIHGGEAVSQNGRDLR 369
>gi|289829424|ref|ZP_06547036.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 346
Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats.
Identities = 57/340 (16%), Positives = 110/340 (32%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQ 252
+ +EA + + + + + ++ NP ++ + P +D +
Sbjct: 1 MLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEDTLIRK 58
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D + G D + I L+ IE A++ +
Sbjct: 59 INYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 118
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P +G D+A+ G D V R G VI +W + +L + + + R
Sbjct: 119 DFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAME-R 177
Query: 369 PDAIIIDANNTGAR-------TCDYLEMLGYHVYRVLGQ---------------KRAVDL 406
I+ D+ GA D + + RV Q +
Sbjct: 178 DADIVYDSIGVGASAGAKFSEINDDRKRENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 237
Query: 407 EFCRNRRTELHVKMADWLE-FASLINHSG--LIQNLKSL----------------KSFIV 447
+F N + + +AD + IN+ L+ L S+
Sbjct: 238 DFFANLKAQAWWLVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPHRDF 297
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 298 DRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 337
>gi|211731806|gb|ACJ10127.1| terminase [Bacteriophage APSE-3]
Length = 469
Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats.
Identities = 64/349 (18%), Positives = 102/349 (29%), Gaps = 67/349 (19%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ--- 252
+EA + ++ + + + W NP G Y+ F KP Q
Sbjct: 105 WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKAIIDKQGYY 162
Query: 253 ---------IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
+ + + R G+ D+ I +E
Sbjct: 163 EDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVE 222
Query: 304 EALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS 361
A++ P ++ D A+ G D + R G +IE WS+ D+
Sbjct: 223 AAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATMTAF 282
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLG----YHVYRVLGQKRAVD------------ 405
YR D I D GA T G V G + D
Sbjct: 283 DEAFDYRADDFIYDNIGLGAGTVKTHLRHGNDGNKMVVTGFGAGDSPDYPDEIYVPGNGE 342
Query: 406 ------------LEFCRNRRTELHVKMAD-------WLEFASLINHSGLI---------- 436
+ RN+R + V +AD +E ++ LI
Sbjct: 343 YLPSSNNDDRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPEALISLSSKIAKLS 402
Query: 437 ---QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
L + P + + SK R+KG KS + +D LM +FA
Sbjct: 403 QLKSELIKQQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|161614489|ref|YP_001588454.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161363853|gb|ABX67621.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 441
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 56/340 (16%), Positives = 109/340 (32%), Gaps = 52/340 (15%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQ 252
+ +EA + + + + + ++ NP ++ + P +D +
Sbjct: 96 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEDTLIRK 153
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A + G D + I L+ IE A++ +
Sbjct: 154 INYDENPFLSDTMLKVIDAARRRYPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 213
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P +G D+A+ G D V R G VI +W + +L + + + R
Sbjct: 214 DFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAME-R 272
Query: 369 PDAIIIDANNTGAR-------TCDYLEMLGYHVYRVLGQ---------------KRAVDL 406
I+ D+ GA D + + RV Q +
Sbjct: 273 DADIVYDSIGVGASAGAKFSEINDDRKRENAYARRVNYQRFNAGAGVHEPDDEYNGIPNK 332
Query: 407 EFCRNRRTELHVKMADWLE-FASLINHSG--LIQNLKSL----------------KSFIV 447
+F N + + +AD + IN+ L+ L S+
Sbjct: 333 DFFANLKAQAWWLVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPHRDF 392
Query: 448 PNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 393 DRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 432
>gi|148826888|ref|YP_001291641.1| phage terminase large subunit [Haemophilus influenzae PittGG]
gi|148718130|gb|ABQ99257.1| predicted phage terminase large subunit [Haemophilus influenzae
PittGG]
Length = 366
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 56/355 (15%), Positives = 114/355 (32%), Gaps = 37/355 (10%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C E+ K +S + +
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCC------------REIQKSISDSVIQMLAD- 72
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q L ++ +G + ++ + + G + +E
Sbjct: 73 QIEMLGLRAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGID-----VVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQI--IVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLIM 320
E + D ++ R G+ + I IE A++ + +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D+ G V+ + W D+ + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEMLG--YHVYRVLGQKRAVDLE-----------FCRNRRTELHVKMAD 422
A + + L V E N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRD 360
>gi|212499721|ref|YP_002308529.1| terminase [Bacteriophage APSE-2]
gi|238898754|ref|YP_002924436.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
gi|211731690|gb|ACJ10178.1| terminase [Bacteriophage APSE-2]
gi|229466514|gb|ACQ68288.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
Length = 469
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 64/349 (18%), Positives = 103/349 (29%), Gaps = 67/349 (19%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ--- 252
+EA + ++ + + + W NP G Y+ F KP Q
Sbjct: 105 WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKAIIDKQGYY 162
Query: 253 ---------IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
+ + + R G+ D+ I +E
Sbjct: 163 EDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVE 222
Query: 304 EALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS 361
A++ P ++ D A+ G D + R G +IE WS+ D+
Sbjct: 223 AAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATMTAF 282
Query: 362 GLVEKYRPDAIIIDANNTGARTC-DYLEML---GYHVYRVLGQKRAVD------------ 405
YR D I D GA T +L V G + D
Sbjct: 283 DEAFDYRADDFIYDNIGLGAGTVKTHLRHSNDGNKIVVTGFGAGDSPDYPDEIYVPGNGE 342
Query: 406 ------------LEFCRNRRTELHVKMAD-------WLEFASLINHSGLI---------- 436
+ RN+R + V +AD +E ++ LI
Sbjct: 343 YLPSSNNDDRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPEALISLSSKIAKLS 402
Query: 437 ---QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
L + P + + SK R+KG KS + +D LM +FA
Sbjct: 403 QLKSELIKQQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|294663744|gb|ADF29298.1| terminase [Pseudomonas phage JG024]
Length = 460
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 63/351 (17%), Positives = 119/351 (33%), Gaps = 62/351 (17%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQ 252
+ +EA I + + N+ WI NP ++ Y+ F KP D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWI-IFNPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ-QDIDSFIPLNIIEEALN--RE 309
I+ + + + I Y D + + G P+ S I L I A++ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKY 367
+P +G D+A++G D L G VI + +W +L +++++ L K
Sbjct: 232 LGWEPAGSKRIGFDVADDGDDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVYNLA-KL 290
Query: 368 RPDAIIIDANNTGARTCDYLEMLG------YHVYRVLGQKRAVD---------------- 405
+ ++ D+ GA L +Y AVD
Sbjct: 291 KGASVTYDSIGVGAHVGSKFAELNDASPDFKLIYDPFNAGGAVDKPDDVYMKLPHTTIKN 350
Query: 406 LEFCRNRRTELHVKMA-------DWLEFASLINHSGLIQ----------------NLKSL 442
+ N + + ++A + +E + LI L S
Sbjct: 351 KDHFSNIKAQKWEEVATRFRKTYEAVEHGKVYPFDELISINSETIHPDKLNQLCIELSSP 410
Query: 443 KSFIVPNTGELAIESKR----VKGAKSTDYSDGLMYTFAENP--PRSDMDF 487
+ + G +ESK+ + KS + +D ++ + P+ DF
Sbjct: 411 RK-DLDMNGRFKVESKKDMREKRKIKSPNIADSVIMSAILPIRKPKGFFDF 460
>gi|211731737|gb|ACJ10086.1| terminase [Bacteriophage APSE-5]
Length = 469
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 64/349 (18%), Positives = 104/349 (29%), Gaps = 67/349 (19%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ--- 252
+EA + ++ + + + W NP G Y+ F KP + Q
Sbjct: 105 WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKELIDTQGYY 162
Query: 253 ---------IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
+ + + R G+ D+ I +E
Sbjct: 163 EDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVE 222
Query: 304 EALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS 361
A++ P ++ D A+ G D + R G +IE WS+ D+
Sbjct: 223 AAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATMTAF 282
Query: 362 GLVEKYRPDAIIIDANNTGARTC-DYLEML---GYHVYRVLGQKRAVD------------ 405
YR D I D GA T +L V G + D
Sbjct: 283 DEAFDYRADDFIYDNIGLGAGTVKTHLRHSNDGNKIVVTGFGAGDSPDYPDEIYVPGNGE 342
Query: 406 ------------LEFCRNRRTELHVKMAD-------WLEFASLINHSGLI---------- 436
+ RN+R + V +AD +E ++ LI
Sbjct: 343 YLPSSNNDDRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPEALISLSSKIAKLS 402
Query: 437 ---QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
L + P + + SK R+KG KS + +D LM +FA
Sbjct: 403 QLKSELIKQQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|284008456|emb|CBA74928.1| phage terminase large subunit [Arsenophonus nasoniae]
Length = 477
Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 81/470 (17%), Positives = 137/470 (29%), Gaps = 104/470 (22%)
Query: 84 AGRGIGKTTLNAWLVLW--------LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
GRG KT A + L + R ++ I E + L AE+ L L
Sbjct: 21 GGRGGMKTVSFAKIALITASINKRRFLCLREFMNSI-----EDSVHAVLQAEIET-LRLQ 74
Query: 136 PNKHWFEMQSLSLHPAPW-YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ ++ + + Y + I SKH +
Sbjct: 75 NRFRILDNCIKGINDSIFKYGQLARNIASIKSKHDFDVA--------------------- 113
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ-- 252
+EA + ++ + + + W NP G Y+ F KP D +
Sbjct: 114 -WVEEAETVSEKSLDILIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKDIIDDKGY 170
Query: 253 ----------IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ + + G+ D+ I +
Sbjct: 171 YEDDDLYVGKVSYLDNPWLPEELKNDAEKMKRDNYKKWLHVYGGECDANYDDAIIQPEWV 230
Query: 303 EEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
+ A++ P ++ D A+ G D + R G ++E WS+ D+ K
Sbjct: 231 DAAIDAHIKLGFKPKGIRVITFDPADSGQDEKALSKRYGVLVEDCVSWSEGDVADATIKA 290
Query: 361 SGLVEKYRPDAIIIDANNTGARTC----------DYLEMLGY------------------ 392
YR D I D GA T + + + G+
Sbjct: 291 FDEAFDYRADDFIYDNIGLGAGTVKTYLRSSNDGNKMVVTGFGAGDSPDYPDEIYVPGNG 350
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMAD-------WLEFASLINHSGLI--------- 436
L + + RN+R + V +AD +E I+ LI
Sbjct: 351 EYIPSLNNDDRTNRDTFRNKRAQYWVYLADRFYKTWCAVEKKEYIDPEELISLSSKIDKL 410
Query: 437 ----QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
L + P + + SK R KG KS + +D LM +FA
Sbjct: 411 SQLKSELVKQQRKRTPGNRLIQLISKEEMRSKGIKSPNMADTLMMSFANP 460
>gi|332884414|gb|EGK04674.1| hypothetical protein HMPREF9456_03377 [Dysgonomonas mossii DSM
22836]
Length = 450
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/302 (17%), Positives = 108/302 (35%), Gaps = 33/302 (10%)
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWI--MTS--NPRRLS--GKFYEIFNKPL--DDW 248
DE S + ++ + A I M NP + +FY+ + DD
Sbjct: 133 IDENSQITEKCWNIVMSRIRHDVAKNGLIPKMFGACNPTKNFVYNRFYKPHRDGILPDDK 192
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDIDSFIPLNIIEEALN 307
Q +D + E + ++R + G++ + D D ++ + +
Sbjct: 193 AFIQALVTDNPFVDKFYIENLKNL----DPISRARLLDGEW-EYDDDPYVLMQYEKIVDL 247
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI--EHLFDWSKTDLRTTNNKISGLVE 365
P M D+A G D+T + + G + + + + D T +
Sbjct: 248 FTNSHVSGGPRYMTIDVARLGKDDTTIRIWEGLISIYKKVIPKCRIDDLTVLARKLQTEY 307
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV---DLEFCRNRRTELHVKMAD 422
I D + G D L G+ V K ++ +N R++ + K+A+
Sbjct: 308 SVPNSNTIADEDGVGGGLVDNLRCKGF----VNNSKPLPIYGEVRNYQNLRSQCYFKLAE 363
Query: 423 -------WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGL 472
+L+ +++ +++ L+ +K +L + +K + KSTD +D L
Sbjct: 364 IVNSNLMYLKNEPIVDRERVVKELEQIKQIDADKDTKLKVITKEMLKSILGKSTDEADNL 423
Query: 473 MY 474
M
Sbjct: 424 MM 425
>gi|211731828|gb|ACJ10140.1| terminase [Bacteriophage APSE-6]
Length = 469
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 82/470 (17%), Positives = 132/470 (28%), Gaps = 104/470 (22%)
Query: 84 AGRGIGKTTLNAWLVLW--------LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
GRG KT A + L + R ++ I E + L AEV L L
Sbjct: 12 GGRGGMKTVSFAKIALITASMHKRRFLCLREFMNSI-----EDSVHAVLQAEVET-LGLQ 65
Query: 136 PNKHWFEMQSLSLHPAPW-YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
++ + + Y + I SKH +
Sbjct: 66 VRFRVLNSCIEGINDSIFKYGQLARNIASIKSKHDFDVA--------------------- 104
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ-- 252
+EA + ++ + + + + + NP G Y+ F KP Q
Sbjct: 105 -WVEEAETVSEKSLDTLIPTIRKPGSELRF--SFNPAEEDGAVYKRFVKPYKAIIDKQGY 161
Query: 253 ----------IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ + + R G+ D+ I +
Sbjct: 162 YEDDDLYVGNVSYLDNPWLPVELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWV 221
Query: 303 EEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
A++ P ++ D A G D + R G +IE W + D+
Sbjct: 222 GAAIDAHIKLGFKPSGIRVVTFDPAGSGQDEKALSKRYGVLIEDCVSWLEGDVADATMTA 281
Query: 361 SGLVEKYRPDAIIIDANNTGARTC-DYLEMLG---YHVYRVLGQKRAVDLEF-------- 408
YR D I D GA T +L V G + D
Sbjct: 282 FDEAFDYRADDFIYDNIGLGAGTVKTHLRHSNDGSKMVVTGFGAGDSPDYPHEIYVPGNG 341
Query: 409 ----------------CRNRRTELHVKMAD-------WLEFASLINHSGLI--------- 436
RN+R + V +AD +E ++ LI
Sbjct: 342 EYLPSSNNDDRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPDALISLSSKIAKL 401
Query: 437 ----QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
L + P + + SK R+KG KS + +D LM +FA
Sbjct: 402 SQLKSELIKQQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|238027628|ref|YP_002911859.1| Bbp25 [Burkholderia glumae BGR1]
gi|237876822|gb|ACR29155.1| Bbp25 [Burkholderia glumae BGR1]
Length = 486
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 30/225 (13%)
Query: 275 LDSDVTRVEVCGQFP---QQDIDSFIPLNIIEEALNREPCPDPYAPLI----MGCDIAEE 327
L + + G F + D IP + A R P I +G D+A
Sbjct: 255 LPEPLRSKMLYGDFAAGREDDPWQVIPSEWVRLAQERWRARSR--PRIPMTALGVDVARG 312
Query: 328 GGDNTVVVLRRGPVIEHLFDWSKT---DLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
G D ++ R G + D ++ L + + +D GA
Sbjct: 313 GQDQSIYTPRYGNWFDEQVCQPGLATPDGFVVAQQVFNL--REPSTLVNLDVVGVGASPF 370
Query: 385 DYL-EMLGYHVYRVLGQKRAVDLEF-----CRNRRTELHVKMADWL-----EFASLINHS 433
D + +++G ++ + G R +L+ N R L +M + L E ++
Sbjct: 371 DIIHQVIGDKIWGISGAARTDELDMSGQFGFVNLRALLWWRMREALDPINGEDLAIPPDP 430
Query: 434 GLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYT 475
L +L + + + G + +ESK + + +S D D +Y
Sbjct: 431 ALAADLCAPR-YRKAPRG-ILVESKEEIKKRIGRSPDRGDSAVYA 473
>gi|85059798|ref|YP_455500.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84780318|dbj|BAE75095.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 483
Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 48/309 (15%), Positives = 96/309 (31%), Gaps = 44/309 (14%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQID 254
+EA ++ + + + W+ NP+ + Y+ F PLDD +
Sbjct: 116 WVEEAEAVTKESWDILIPTIRKPGSE-IWVSF-NPKNILDDTYQRFVVNPLDDICLLTVH 173
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCP 312
+ D D+ G+ + I I A++
Sbjct: 174 YTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGEPVADSDLAIIKPLWIAAAVDAHMTLGF 233
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
D +G D+A+EG D + +G V+ L +W + D+ ++N+++ + I
Sbjct: 234 DAVGEKRLGFDVADEGEDCNALCFVQGSVVLDLDEWHRGDVIASSNRVNRYAIERGITCI 293
Query: 373 IIDANNTGARTCDYLEMLGYHVYRVLGQKRA------------VDLEFCRNRRTELHVKM 420
I D+ GA +L+ + + A + + N + + +
Sbjct: 294 IYDSIGVGAGVKAHLKRIAAINVKGFNAGEAVKDPDALYMPGKTNKDMFANIKAQAWWAV 353
Query: 421 ADWL--------------EFASLINHSGLI-------------QNLKSLKSFIVPNTGEL 453
+ + A L LI + S N G +
Sbjct: 354 RERFYKTWRCIEAKKQDPKAALLYPTDELISLSTTNIKRLEYLKAELSRPRVDYDNNGHV 413
Query: 454 AIESKRVKG 462
+ESK+
Sbjct: 414 KVESKKDMK 422
>gi|218148543|ref|YP_002364311.1| terminase, large subunit [Pseudomonas phage 14-1]
gi|218059739|emb|CAU13815.1| terminase, large subunit [Pseudomonas phage 14-1]
Length = 460
Score = 104 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 63/351 (17%), Positives = 119/351 (33%), Gaps = 62/351 (17%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQ 252
+ +EA I + + N+ WI NP ++ Y+ F KP D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWI-IFNPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ-QDIDSFIPLNIIEEALN--RE 309
I+ + + + I Y D + + G P+ S I L I A++ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKY 367
+P +G D+A++G D L G VI + +W +L +++++ L K
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVYNLA-KM 290
Query: 368 RPDAIIIDANNTGARTCDYLEMLG------YHVYRVLGQKRAVD---------------- 405
+ ++ D+ GA L +Y AVD
Sbjct: 291 KGASVTYDSIGVGAHVGSKFAELNDASPDFKLIYDPFNAGGAVDKPDDIYMKLPHTTIKN 350
Query: 406 LEFCRNRRTELHVKMA-------DWLEFASLINHSGLIQ----------------NLKSL 442
+ N + + ++A + +E + LI L S
Sbjct: 351 KDHFSNIKAQKWEEVATRFRKTYEAVEHGKVYPFDELISINSETIHPDKLNQLCIELSSP 410
Query: 443 KSFIVPNTGELAIESKR----VKGAKSTDYSDGLMYTFAENP--PRSDMDF 487
+ + G +ESK+ + KS + +D ++ + P+ DF
Sbjct: 411 RK-DLDMNGRFKVESKKDMREKRKIKSPNIADSVIMSAILPIRKPKGFFDF 460
>gi|218457805|ref|YP_002418810.1| terminase, large subunit [Pseudomonas phage SN]
gi|218379073|emb|CAT99652.1| terminase, large subunit [Pseudomonas phage SN]
Length = 460
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 63/351 (17%), Positives = 119/351 (33%), Gaps = 62/351 (17%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQ 252
+ +EA I + + N+ WI NP ++ Y+ F KP D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWI-IFNPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ-QDIDSFIPLNIIEEALN--RE 309
I+ + + + I Y D + + G P+ S I L I A++ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKY 367
+P +G D+A++G D L G VI + +W +L +++++ L K
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVYNLA-KV 290
Query: 368 RPDAIIIDANNTGARTCDYLEMLG------YHVYRVLGQKRAVD---------------- 405
+ ++ D+ GA L +Y AVD
Sbjct: 291 KGASVTYDSIGVGAHVGSKFAELNDASPDFKLIYDPFNAGGAVDKPDDVYMKLPHTTIKN 350
Query: 406 LEFCRNRRTELHVKMA-------DWLEFASLINHSGLIQ----------------NLKSL 442
+ N + + ++A + +E + LI L S
Sbjct: 351 KDHFSNIKAQKWEEVATRFRKTYEAVEHGKVYPFDELISINSETIHPDKLNQLCIELSSP 410
Query: 443 KSFIVPNTGELAIESKR----VKGAKSTDYSDGLMYTFAENP--PRSDMDF 487
+ + G +ESK+ + KS + +D ++ + P+ DF
Sbjct: 411 RK-DLDMNGRFKVESKKDMREKRKIKSPNIADSVIMSAILPIRKPKGFFDF 460
>gi|9633565|ref|NP_050979.1| P18 [Acyrthosiphon pisum bacteriophage APSE-1]
gi|6118013|gb|AAF03961.1|AF157835_18 P18 [Endosymbiont phage APSE-1]
Length = 469
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 64/349 (18%), Positives = 103/349 (29%), Gaps = 67/349 (19%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ--- 252
+EA + ++ + + + W NP G Y+ F KP + Q
Sbjct: 105 WVEEAETVSEKSLDSLIPTIRKPGSE-LWFSF-NPAEEDGAVYKRFVKPYKELIDTQGYY 162
Query: 253 ---------IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
+ + + R G+ D+ I +E
Sbjct: 163 EDDDLYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVE 222
Query: 304 EALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS 361
A++ P ++ D A+ G D + R G +IE WS+ D+
Sbjct: 223 AAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATMTAF 282
Query: 362 GLVEKYRPDAIIIDANNTGARTC-DYLEMLGYHVYRVLGQKRAVDLEFC----------- 409
YR D I D GA T +L V+ A D
Sbjct: 283 DDAFDYRADDFIYDNIGLGAGTVKTHLRHSNDGNKMVVTGFGAGDSPDYPDEIYVPGNGE 342
Query: 410 ----------------RNRRTELHVKMAD-------WLEFASLINHSGLI---------- 436
RN+R + V +AD +E ++ LI
Sbjct: 343 YLPSSNNDDRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPDALISLSSKIAKLS 402
Query: 437 ---QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
L + P + + SK R+KG KS + +D LM +FA
Sbjct: 403 QLKSELIKQQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|197261331|ref|YP_002154147.1| putative terminase, large subunit [Pseudomonas phage LBL3]
gi|197244421|emb|CAR31156.1| putative terminase, large subunit [Pseudomonas phage LBL3]
Length = 460
Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats.
Identities = 63/351 (17%), Positives = 119/351 (33%), Gaps = 62/351 (17%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQ 252
+ +EA I + + N+ WI NP ++ Y+ F KP D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWI-IFNPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ-QDIDSFIPLNIIEEALN--RE 309
I+ + + + I Y D + + G P+ S I L I A++ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKY 367
+P +G D+A++G D L G VI + +W +L +++++ L K
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVYNLA-KM 290
Query: 368 RPDAIIIDANNTGARTCDYLEMLG------YHVYRVLGQKRAVD---------------- 405
+ ++ D+ GA L +Y AVD
Sbjct: 291 KGASVTYDSIGVGAHVGSKFAELNDASPDFKLIYDPFNAGGAVDKPDDIYMKLPHTTIKN 350
Query: 406 LEFCRNRRTELHVKMA-------DWLEFASLINHSGLIQ----------------NLKSL 442
+ N + + ++A + +E + LI L S
Sbjct: 351 KDHFSNIKAQKWEEVATRFRKTYEAVEHGKVYPFDELISINSETIHPDKLNQLCIELSSP 410
Query: 443 KSFIVPNTGELAIESKR----VKGAKSTDYSDGLMYTFAENP--PRSDMDF 487
+ + G +ESK+ + KS + +D ++ + P+ DF
Sbjct: 411 RK-DLDMNGRFKVESKKDMREKRKIKSPNIADSVIMSAILPIRKPKGFFDF 460
>gi|149408318|ref|YP_001294421.1| conserved hypothetical protein ORF004 [Pseudomonas phage F8]
gi|219523873|ref|YP_002455934.1| terminase large subunit [Pseudomonas phage PB1]
gi|190333469|gb|ACE73724.1| terminase large subunit [Pseudomonas phage PB1]
Length = 460
Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats.
Identities = 62/351 (17%), Positives = 117/351 (33%), Gaps = 62/351 (17%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQ 252
+ +EA I + + N+ WI NP ++ Y+ F KP D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWI-IFNPNEVTDFVYQNFVVKPPKDAFVKM 172
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ-QDIDSFIPLNIIEEALN--RE 309
I+ + + + I Y D D + G P+ S I L I A++ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDKDQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKY 367
+P +G D+A++G D L G VI + +W +L +++++ L K
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVYNLA-KM 290
Query: 368 RPDAIIIDANNTGARTCDYLEMLG---------YHVYRVLGQKRAVD------------- 405
+ ++ D+ GA L Y + G D
Sbjct: 291 KGASVTYDSIGVGAHVGSKFAELNDSSPDFKLTYDPFNAGGAVDKPDDIYMKLPHTTIKN 350
Query: 406 LEFCRNRRTELHVKMA-------DWLEFASLINHSGLIQ----------------NLKSL 442
+ N + + ++A + + + LI L S
Sbjct: 351 KDHFSNIKAQKWEEVATRFRKTYEAVVHGKVYPFDELISINSETIHPDKLNQLCIELSSP 410
Query: 443 KSFIVPNTGELAIESKR----VKGAKSTDYSDGLMYTFAENP--PRSDMDF 487
+ + G +ESK+ + KS + +D ++ + P+ DF
Sbjct: 411 RK-DLDMNGRFKVESKKDMREKRKIKSPNIADSVIMSAILPIRKPKGFFDF 460
>gi|157265379|ref|YP_001467938.1| terminase large subunit [Thermus phage P23-45]
gi|156905274|gb|ABU96918.1| terminase large subunit [Thermus phage P23-45]
Length = 485
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 69/395 (17%), Positives = 134/395 (33%), Gaps = 47/395 (11%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GR GK+ + ++ + RPG +A + Q + V K L E+Q
Sbjct: 38 GRQSGKSEAASVEAVFELFARPGSQGWIIAPTYDQAEIIFGRVVEKVERLAEVFPATEVQ 97
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMC-RTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+K +T R S +RPD G +I DEA+
Sbjct: 98 LQRRRLRLLVHHYDRPVNAPGAKRVATSEFRGKSADRPDNLRGATLD---FVILDEAAMI 154
Query: 204 PDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-----------------NKPL 245
P + I L+ R+ + ++ S P+ L+ FYE F N+
Sbjct: 155 PFSVWSEAIEPTLSVRDG--WALIISTPKGLN-WFYEFFLMGWRGGLKEGIPNSGVNQTH 211
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII--- 302
D++ F + V ++ + R + R E +F F L+++
Sbjct: 212 PDFESFHAASWDVWPERREWY--MERRLYIPDLEFRQEYGAEFVSHSNSVFSGLDMLILL 269
Query: 303 -EEALNREPCPDPYAP---LIMGCDIAEEGGDN--TVVVLRRGPVIEHLFDWSKTDLRTT 356
E + Y P +G D + + +V+ L G ++ L +
Sbjct: 270 PYERRGTRLVVEDYRPDHIYCIGADFGKNQDYSVFSVLDLDTGAIV-CLERMNGATWSDQ 328
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
++ L E Y ++ D G + L+ G + + + +V + N
Sbjct: 329 VARLKALSEDYGHAYVVADTWGVGDAIAEELDAQGINYTPLPVKSSSVKEQLISN----- 383
Query: 417 HVKMADWLEFA--SLINHSGLIQNLKSLKSFIVPN 449
+A +E ++ N ++ L++ + + +
Sbjct: 384 ---LALLMEKGQVAVPNDKTILDELRNFRYYRTAS 415
>gi|211731785|gb|ACJ10115.1| terminase [Bacteriophage APSE-7]
Length = 469
Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats.
Identities = 82/470 (17%), Positives = 133/470 (28%), Gaps = 104/470 (22%)
Query: 84 AGRGIGKTTLNAWLVLW--------LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
GRG KT A + L + R ++ I E + L AEV L L
Sbjct: 12 GGRGGMKTVSFAKIALITAAMHKRRFLCLREFMNSI-----EDSVHAVLQAEVET-LGLH 65
Query: 136 PNKHWFEMQSLSLHPAPW-YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
++ + + Y + I SKH +
Sbjct: 66 ARFRVLNSCIEGINASIFKYGQLARNIASIKSKHDFDVA--------------------- 104
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ-- 252
+EA + ++ + + + W NP G Y+ F KP +
Sbjct: 105 -WVEEAETVSEKSLDTLISTIRKPGSE-LWFSF-NPSEEDGAVYQRFVKPYKAIIDKKGY 161
Query: 253 ----------IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ + + R G+ D+ I +
Sbjct: 162 YEDDDLYVGNVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYDDALIQPEWV 221
Query: 303 EEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
+ A++ P ++ D A+ G D + R G +IE WS+ D+
Sbjct: 222 DAAIDAHIKLGFPPRGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATITA 281
Query: 361 SGLVEKYRPDAIIIDANNTGARTC-DYLEMLGYHVYRVLGQKRAVDLEFC---------- 409
YR D I D GA T +L V+ A D
Sbjct: 282 FDEAFDYRADDFIYDNIGLGAGTVKTHLRHSNDGNKMVVTGFGAGDSPDYPDEVYVPSNA 341
Query: 410 -----------------RNRRTELHVKMAD-------WLEFASLINHSGLI--------- 436
RN+ + V +AD +E ++ LI
Sbjct: 342 EYLPSSNNDDRTHRDTFRNKHAQYWVYLADRFYKTWRAVEKGEYLDPDELISLSSKIEKL 401
Query: 437 ----QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
L +P + + SK R+KG KS + +D LM +FA
Sbjct: 402 SQLKSELVKQPRKRMPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|197261421|ref|YP_002154236.1| putative terminase, large subunit [Pseudomonas phage LMA2]
gi|197244511|emb|CAR31245.1| putative terminase, large subunit [Pseudomonas phage LMA2]
Length = 460
Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats.
Identities = 62/351 (17%), Positives = 119/351 (33%), Gaps = 62/351 (17%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQ 252
+ +EA I + + N+ WI NP ++ Y+ F KP D
Sbjct: 115 ILWLEEAHYLTQEQWEVIEPTIRKENSE-IWI-IFNPNEVTDFVYQNFVVKPPKDSCVKM 172
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ-QDIDSFIPLNIIEEALN--RE 309
I+ + + + I Y D + + G P+ S I L I A++ ++
Sbjct: 173 INWNENPFLSETMLKVIHEAYERDREQAE-HIYGGIPKTGGDKSVINLKFILAAIDAHKK 231
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKY 367
+P +G D+A++G D L G +I + +W +L +++++ L K
Sbjct: 232 LGWEPAGSKRIGFDVADDGEDANATTLMHGNIIMEVDEWDGLEDELLKSSSRVYNLA-KM 290
Query: 368 RPDAIIIDANNTGARTCDYLEMLG------YHVYRVLGQKRAVD---------------- 405
+ ++ D+ GA L +Y AVD
Sbjct: 291 KGTSVTYDSIGVGAHVGSKFAELNDASPDFKLIYDPFNAGGAVDKPDDVYMKLPHTTIKN 350
Query: 406 LEFCRNRRTELHVKMA-------DWLEFASLINHSGLIQ----------------NLKSL 442
+ N + + ++A + +E + LI L S
Sbjct: 351 KDHFSNIKAQKWEEVATRFRKTYEAVEHGKVYPFDELISINSETIHPDKLNQLCIELSSP 410
Query: 443 KSFIVPNTGELAIESKR----VKGAKSTDYSDGLMYTFAENP--PRSDMDF 487
+ + G +ESK+ + KS + +D ++ + P+ DF
Sbjct: 411 RK-DLDMNGRFKVESKKDMREKRKIKSPNIADSVIMSAILPIRKPKGFFDF 460
>gi|157265496|ref|YP_001468054.1| phage terminase large subunit [Thermus phage P74-26]
gi|156905391|gb|ABU97034.1| phage terminase large subunit [Thermus phage P74-26]
Length = 485
Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats.
Identities = 69/395 (17%), Positives = 134/395 (33%), Gaps = 47/395 (11%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GR GK+ + ++ + RPG +A + Q + V K L E+Q
Sbjct: 38 GRQSGKSEAASVEAVFELFARPGSQGWIIAPTYDQAEIIFGRVVEKVERLAEVFPATEVQ 97
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMC-RTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+K +T R S +RPD G +I DEA+
Sbjct: 98 LQRRRLRLLVHHYDRPVNAPGAKRVATSEFRGKSADRPDNLRGATLD---FVILDEAAMI 154
Query: 204 PDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-----------------NKPL 245
P + I L+ R+ + ++ S P+ L+ FYE F N+
Sbjct: 155 PFSVWSEAIEPTLSVRDG--WALIISTPKGLN-WFYEFFLMGWRGGLKEGIPNSGINQTH 211
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII--- 302
D++ F + V ++ + R + R E +F F L+++
Sbjct: 212 PDFESFHAASWDVWPERREWY--MERRLYIPDLEFRQEYGAEFVSHSNSVFSGLDMLILL 269
Query: 303 -EEALNREPCPDPYAP---LIMGCDIAEEGGDN--TVVVLRRGPVIEHLFDWSKTDLRTT 356
E + Y P +G D + + +V+ L G ++ L +
Sbjct: 270 PYERRGTRLVVEDYRPDHIYCIGADFGKNQDYSVFSVLDLDTGAIV-CLERMNGATWSDQ 328
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
++ L E Y ++ D G + L+ G + + + +V + N
Sbjct: 329 VARLKALSEDYGHAYVVADTWGVGDAIAEELDAQGINYTPLPVKSSSVKEQLISN----- 383
Query: 417 HVKMADWLEFA--SLINHSGLIQNLKSLKSFIVPN 449
+A +E ++ N ++ L++ + + +
Sbjct: 384 ---LALLMEKGQVAVPNDKTILDELRNFRYYRTAS 415
>gi|159904490|ref|YP_001548152.1| hypothetical protein MmarC6_0096 [Methanococcus maripaludis C6]
gi|159885983|gb|ABX00920.1| protein of unknown function DUF264 [Methanococcus maripaludis C6]
Length = 505
Score = 102 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 76/437 (17%), Positives = 138/437 (31%), Gaps = 72/437 (16%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E E +D+ + I+ GR GKT + + S G SV+ +A
Sbjct: 65 QEEIAEAIDSEMYDV----------ITINIGRRGGKTEVMGGVGPKFCSKYRGFSVLVVA 114
Query: 115 NSETQLKTTLWAEVSKWL-SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
Q KT ++ ++ + L S ++ + + +P+ + I+ K
Sbjct: 115 PVYNQAKT-MYKKIKRGLESNKESRQLVKPKKEGFKESPFPLITFYNGSTIEFK------ 167
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG-ILGFLTERNANRFWIMTSNPRR 232
S E PD + II DEA+ D I + L + + S P
Sbjct: 168 ---SAETPDNLR---SEGYDLIIVDEAAFVDDEIISAVLEPMLMDSGG--ILVKISTPWG 219
Query: 233 LSGKFYEIFNK----------------PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
FY+ + K +K F+ + + F G G D
Sbjct: 220 TGNHFYDSYIKGELQAKMLEEGEGIPEDELRYKSFKFPSWVNPYLSKRFLMGKKKDLGED 279
Query: 277 SDVTRVEVCGQFPQQD-------------IDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
+ V E C +F + D D+F E + + ++G D
Sbjct: 280 NPVWLQEYCAEFIEDDTTVFSTAHVQACLSDAFETHYKTENLIYLIDEGERNKEYVIGLD 339
Query: 324 IAEEGGDNTVVVLRRGPV----IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+A+ +VL + + ++ D K L E + +D
Sbjct: 340 LAKHNDYTVFIVLDITTGPPYTLVYFERFNGIDYTDIAEKHLALSEAFNDAPACVDQTGI 399
Query: 380 GARTCDYLEMLGY-HVYRVLGQKRAVDLEFCRNRRTELHVKMADWL--EFASLINHSGLI 436
G D + +G ++ + TE+ K++ + + L+
Sbjct: 400 GEAYMDIAKKVGLDNLTGFKFTNESK---------TEIITKLSTSFRNKEVVMPKIRVLL 450
Query: 437 QNLKSLKSFIVPNTGEL 453
LK+ F T +L
Sbjct: 451 TELKAFMRFRTKTTFKL 467
>gi|150021340|ref|YP_001306694.1| hypothetical protein Tmel_1462 [Thermosipho melanesiensis BI429]
gi|149793861|gb|ABR31309.1| protein of unknown function DUF264 [Thermosipho melanesiensis
BI429]
Length = 421
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 57/316 (18%), Positives = 105/316 (33%), Gaps = 34/316 (10%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I AGR GKT A + + + P VI S Q +
Sbjct: 39 ICAGRRFGKTNYVAGKIFYYATIHPKSRVIVGGPSLDQ---------------AKIYYDL 83
Query: 142 EMQSLSLHPAPWYSDVLHCS--LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+++ L P + S I K+ S++ + G ++ E
Sbjct: 84 LTEAIELSPLKGFVKKTKDSPFPTIYLKNGSSITVRSTAHNGKYLRGRKVN---LVVLTE 140
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR---FQIDTR 256
A+ D + ++ + + + I+ S P ++ FYE + + L + K F
Sbjct: 141 AAFIKDSVYEQVITPM-KLDTGAPVILESTPNGMN-YFYEEYQRGLKNKKHTISFHATVY 198
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDP 314
+D E A+ V R E +F D F P I+ EA +
Sbjct: 199 DNPFLDQEEIENAKAK--TPDYVWRQEYLAEFVD-DDTVFFPWKILVEAFEDYKPEGYKD 255
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD---LRTTNNKISGLVEKYRPDA 371
+G D+A+ ++VL + ++ + + ++ L KYR
Sbjct: 256 GRKYSIGVDLAKYRDYTVIIVLDVTEEPFKIAEFHRFNQIPYEEVIRIVNDLQAKYRA-Q 314
Query: 372 IIIDANNTGARTCDYL 387
+ +DA G + +
Sbjct: 315 VYLDATGVGDPISERI 330
>gi|118590957|ref|ZP_01548357.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614]
gi|118436479|gb|EAV43120.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614]
Length = 526
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 18/203 (8%)
Query: 290 QQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
Q IP + ++ A R + ++ D+A+ G D TV+ G E
Sbjct: 294 QDHEWQVIPSDWVDLAFERYDQGIDRDEPMTVLAVDVAQGGKDRTVLQPLHGRRFETNIV 353
Query: 348 WSKTDLRTTNNKISGLVEKYRPDA-IIID-ANNTGARTCDYLEMLGYH-----VYRVLGQ 400
TD + + S ++ + R +A I++D G T +L+ V+
Sbjct: 354 RKGTDTKDGADVGSLIIRERRDNAMIVVDCTGGWGGDTVGFLKRENNIPAEKCVFSAQSG 413
Query: 401 KRAVDLE-FCRNRRTELHVKMADWLE----FASLINHSGLIQNLKSLKSFIVPNTGELAI 455
+RA D N R EL+ ++ + L I S ++ + + + N G++ I
Sbjct: 414 ERAKDSRIPFYNLRAELYWRLREALHPKSGLGLAIRRSATVKAQLTAHRWKMRN-GKILI 472
Query: 456 ESK---RVKGAKSTDYSDGLMYT 475
ESK + + S D +D ++
Sbjct: 473 ESKEEIKDRLGSSPDEADAIVEA 495
>gi|126011061|ref|YP_001039811.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
gi|119712637|gb|ABL96858.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
Length = 459
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/339 (16%), Positives = 107/339 (31%), Gaps = 57/339 (16%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQ 252
+ +EA + I + + + I NP + + Y+ F P D Q
Sbjct: 115 ILWLEEAQYLTEEQWNVINPTIRREGSQIWLIW--NPDQYTDFIYQNFVVNPPADCLSKQ 172
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ-QDIDSFIPLNIIEEALN--RE 309
I+ + + + I Y D + V G P+ + I L + A++ ++
Sbjct: 173 INWTENPFLSDTMLKVIYDEYQRDPKLAE-HVYGGAPKMGGDKAIIQLQYVLAAIDAHKK 231
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNN--KISGLVEKY 367
G DIA++G D +V G V+ +W + + K+ +
Sbjct: 232 LGWKIEGSKRTGFDIADDGDDANAIVDAIGNVVVWAEEWDGLEDELLKSSTKVFNHALE- 290
Query: 368 RPDAIIIDANNTGARTCDYLEMLGY-----HVYRVLGQKRA----------------VDL 406
+ +II D+ GA L +Y A +
Sbjct: 291 KGSSIIFDSIGVGAHAGSKFSELNEARSLEIIYEPFNAGGAVYDPDGTYMKLPHVVITNR 350
Query: 407 EFCRNRRTELHVKMADWLE-------FASLINHSGLI---------------QNLKSLKS 444
E N + ++ ++A + + H LI + +
Sbjct: 351 EHFSNVKAQMWDRVATRFRKTYEVVTYGANHPHDELISISSEHVPAKILDKLKIELASPH 410
Query: 445 FIVPNTGELAIESKR----VKGAKSTDYSDGLMYTFAEN 479
V G+ +ESK+ +G KS + +D + +
Sbjct: 411 KDVDGMGKFKVESKKDMREKRGIKSPNIADAFIMAMIQP 449
>gi|211731761|gb|ACJ10100.1| terminase [Bacteriophage APSE-4]
Length = 469
Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats.
Identities = 63/349 (18%), Positives = 101/349 (28%), Gaps = 67/349 (19%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ--- 252
+EA + ++ + + + W NP G Y F KP Q
Sbjct: 105 WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYRRFVKPYKAIIDKQGYY 162
Query: 253 ---------IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
+ + + R G+ D+ I ++
Sbjct: 163 EDDEVYVGKVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYGDALIQPEWVD 222
Query: 304 EALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS 361
A++ P ++ D A+ G D + R G +IE WS+ D+
Sbjct: 223 AAIDAHIKLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATITAF 282
Query: 362 GLVEKYRPDAIIIDANNTGARTC-DYLEMLGYHVYRVLGQKRAVDLEFC----------- 409
YR D I D GA T +L V+ A D
Sbjct: 283 DDAFDYRADDFIYDNIGLGAGTVKTHLRHSNDGTKMVVTGFGAGDSPDYPDEIYVPGNGE 342
Query: 410 ----------------RNRRTELHVKMAD-------WLEFASLINHSGLI---------- 436
RN+R + V +AD +E ++ LI
Sbjct: 343 YLPSSNNDDRTHRDTFRNKRAQYWVYLADRFYKTWRAVERGEYLDPDALISLSSKIAKLS 402
Query: 437 ---QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
L + P + + SK R+KG KS + +D LM +FA
Sbjct: 403 QLKSELIKQQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|256422889|ref|YP_003123542.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
gi|256037797|gb|ACU61341.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
Length = 471
Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats.
Identities = 52/286 (18%), Positives = 107/286 (37%), Gaps = 38/286 (13%)
Query: 229 NPRRLSGKFYEIFNKPL------DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
NP++ + +F KP D K Q + IDP + + +++ + V +
Sbjct: 196 NPKKN--WCHTVFWKPFKAGQLPDKVKFLQALVQDNPFIDPGYIDNLMS---ITDKVKKQ 250
Query: 283 EVC-GQFP-QQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP 340
+ G F D ++ + + I + E + + DIA G D +VV++ G
Sbjct: 251 RLLYGNFDYDDDDNALMEYDSINDIFTNEFVVE--GKKYITADIARFGSDKSVVMVWNGL 308
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ + + K ++I + KY +++D + G D L+ + +
Sbjct: 309 RVVEIRKFEKMRTTKVADEIEKIRNKYGIPLSHVVVDEDGVGGGVVDKLDG----CHGFV 364
Query: 399 GQKRAVDLEF------CRNRRTELHVKMADWL---EFASLINHSG----LIQNLKSLKSF 445
+D +N +++ + +A+ + + + L + L+ +K +
Sbjct: 365 NNSAPIDNPQDQQQQNYKNLKSQCYYMLAERINDHKIFVRCDDYEMRELLSEELEQVKKW 424
Query: 446 IVPNTGELAIESK---RVKGAKSTDYSDGLMY-TFAENPPRSDMDF 487
N +L + K + +S DYSD LM F E P
Sbjct: 425 DADNDKKLEVMPKKVVKELLGRSPDYSDTLMMRMFFELKPEQRWQI 470
>gi|313760829|gb|ADR79391.1| terminase [APSE phage Eptesicus fuscus/P5/IT/USA/2009]
Length = 394
Score = 100 bits (248), Expect = 8e-19, Method: Composition-based stats.
Identities = 66/342 (19%), Positives = 102/342 (29%), Gaps = 67/342 (19%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
+EA + ++ + + + W NP G Y F KP Q
Sbjct: 44 WVEEAETVSEKSLDTLIPTIRKPGSE-LWFSF-NPAEEDGAVYRRFVKPYKAIIDKQGYY 101
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD-----IDSFIPLNIIEEALNREP 310
E LD+ E+ + + D+ I +E A +
Sbjct: 102 EDDEVYVGKVS-------YLDNPWLPAELKNDAQKGECDANYEDALIQPEWVEAATDAHI 154
Query: 311 C--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR 368
P ++ D A+ G D + R G +IE WS+ D+ YR
Sbjct: 155 KLGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATMTAFDEAFDYR 214
Query: 369 PDAIIIDANNTGARTC-DYLEML---GYHVYRVLGQKRAVDLEF---------------- 408
D I D GA T +L V G + D
Sbjct: 215 ADDFIYDNIGLGAGTVKTHLRHSNDGNKMVVTGFGAGDSPDYPHEIYVPGNGEYLPSSNN 274
Query: 409 --------CRNRRTELHVKMAD-------WLEFASLINHSGLI-------------QNLK 440
RN+R + V +AD +E ++ LI L
Sbjct: 275 DDRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPEALISLSSKIAKLSQLKSELI 334
Query: 441 SLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
+ P + + SK R+KG KS + +D LM +FA
Sbjct: 335 KQQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 376
>gi|161525001|ref|YP_001580013.1| hypothetical protein Bmul_1828 [Burkholderia multivorans ATCC
17616]
gi|189350256|ref|YP_001945884.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616]
gi|160342430|gb|ABX15516.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
gi|189334278|dbj|BAG43348.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616]
Length = 531
Score = 99.0 bits (245), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/332 (16%), Positives = 104/332 (31%), Gaps = 55/332 (16%)
Query: 190 TYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
I DE++ + L T + S P + F + +
Sbjct: 195 DRASFYIVDESAFLERPQLVDASLSATTNCRQD-----ISTPNGMGNSFAQ--RRHSGKV 247
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN- 307
K F R D +++ A LD V E+ + IP ++ A+
Sbjct: 248 KVFTFHWRDDPRKDDAWYAKQCAE--LDPVVVAQEIDINYAASVEGVVIPSAWVQAAIGA 305
Query: 308 -REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLV 364
+ +P G D+A+EG D R G ++ L WS D+ T K G+
Sbjct: 306 HLKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLLNFLRSWSGKGGDIYETVEKTFGIC 365
Query: 365 EKYRPDAIIIDANNTGARTCDYLE----------MLGYHVYRVLGQKRAVDLE------- 407
++ ++ DA+ GA + G D E
Sbjct: 366 DELGYESFDYDADGLGAGVRGDARVINEQRIAIGKRPINDEPFRGSGPVHDPEGEMVPER 425
Query: 408 ----FCRNRRTELHVKMADWLEFA-------------SLINHSGLIQNLKSL------KS 444
+ N + + + + +I+ ++ L +L +
Sbjct: 426 KNKDYFANLKAQSWWALRLRFQATYRAVVEGKPYNPDDIISIDPELKELAALTMELSQPT 485
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
+ V G++ I+ K G KS + +D +M +
Sbjct: 486 YTVNGVGKIVID-KAPDGTKSPNLADAVMIAY 516
>gi|255321082|ref|ZP_05362250.1| gp33 TerL [Acinetobacter radioresistens SK82]
gi|262379515|ref|ZP_06072671.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164]
gi|255301852|gb|EET81101.1| gp33 TerL [Acinetobacter radioresistens SK82]
gi|262298972|gb|EEY86885.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164]
Length = 558
Score = 98.6 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/344 (15%), Positives = 106/344 (30%), Gaps = 61/344 (17%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + +++ I S P + KF++ ++ + F +
Sbjct: 210 MYFLDEWAFVERQ--EAVDAAISQ--NTNVHIKGSTPNGIGDKFHQ--DRFSGRYAVFTM 263
Query: 254 DTRTVEGIDP--SFHEGIIARYGL------DSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
R + +I + D V EV + IP ++ A
Sbjct: 264 AWRDNPDKNWQVELDGKLIYPWYEKQLATLDDIVLAQEVDIDYAASVEGVLIPSAWVQAA 323
Query: 306 LNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKIS 361
++ +P D+A+EG D R G V+++L WS D+ T K
Sbjct: 324 VDAHIKLGIEPSGERNGALDVADEGKDKNSFAARHGIVLQYLDTWSGIGDDIFGTTQKAI 383
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRAVDLE---- 407
+ + DA+ GA ++ G + E
Sbjct: 384 DACLDLKLNIFFYDADGLGAGVRGDARVINELNKAKGIPEIEANPFRGSGAVHNPEQEMV 443
Query: 408 -------FCRNRRTELHVKMA-------DWLEFASLINHS--------------GLIQNL 439
F N + ++ + L+ S ++
Sbjct: 444 EARKNVDFFANLKAQMWWSLRLRFQNTYRALQGMQYDPDSLISLSTKDINKQELEQLKRE 503
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRS 483
S ++ G++ + +K+ GA S + +DG+M F++ P +
Sbjct: 504 LSQPTYSKNGAGKILV-NKQPDGALSPNRADGVMICFSDIRPPA 546
>gi|308097723|gb|ADO14402.1| AB1gp31 [Acinetobacter phage AB1]
Length = 313
Score = 96.7 bits (239), Expect = 8e-18, Method: Composition-based stats.
Identities = 48/292 (16%), Positives = 89/292 (30%), Gaps = 52/292 (17%)
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--RE 309
I+ + + + I + D + G D S I + +E AL+ +
Sbjct: 21 HINYNENPFLSQTALDVIADKKRRDPEGFAHIYDGMPRADDDMSIIKASWVEAALDAHKL 80
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKY 367
D +G D+A+ G D +V R+G V +W + +L + + +
Sbjct: 81 LNLDDTGRSYLGFDVADAGKDKCALVHRKGIVAYWSDEWKAREDELLKSATRTYNEAIRL 140
Query: 368 RPDAIIIDANNTGARTCDYLEML-----------------GYHVYRVLGQKRAVDLEFCR 410
I D+ GA + L G H Q + + +F
Sbjct: 141 -NALIHYDSTGVGAGVGAKVNELNKEKKTNVQHSKFVAGGGVHEPDKFYQPKITNKDFFA 199
Query: 411 NRRTELHVKMADWLEF-----------ASLINH--SGLI------------QNLKSLKSF 445
N + + +AD + H LI + S+
Sbjct: 200 NAKAQAWWLVADKFRLTYQVIQAIKNGTEIPKHKPEDLISISSDMPNLHRLKVELSIPHR 259
Query: 446 IVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQ 494
G + +ESK+ + KS + +D + +A P + M
Sbjct: 260 DEDRLGRVMVESKQDLAKRDVKSPNLADAFIMAYA--PVKRSMQINIADVES 309
>gi|169633984|ref|YP_001707720.1| putative bacteriophage protein; putative prophage terminase large
subunit [Acinetobacter baumannii SDF]
gi|169152776|emb|CAP01795.1| putative bacteriophage protein; putative prophage terminase large
subunit [Acinetobacter baumannii]
Length = 552
Score = 96.7 bits (239), Expect = 8e-18, Method: Composition-based stats.
Identities = 58/337 (17%), Positives = 107/337 (31%), Gaps = 61/337 (18%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + +++ I S P + +F++ ++ + F +
Sbjct: 210 MYFLDEWAFVEQQ--EAVDAAISQ--NTNVHIKGSTPNGIGDRFHQ--DRFSGRYAVFTM 263
Query: 254 DTRTVEGIDPSFHE--GIIARYGL------DSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
R + + +I + D V EV + IP ++ A
Sbjct: 264 PWRDNPDKNWTVTYNGKVIYPWYEKQLATLDDVVLAQEVDINYAASVEGVLIPSTWVQAA 323
Query: 306 LN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKIS 361
++ ++ +P I G D+A+EG D R G V+ +L WS D+ T K
Sbjct: 324 IDAHKKLQIEPTGDRIGGLDVADEGKDKNSFAARHGVVMTYLATWSGKGDDIFGTTQKAM 383
Query: 362 GLVEKYRPDAIIIDANNTGAR-------TCDYLEMLG---YHVYRVLGQKRAVDLE---- 407
L + D + DA+ GA + LG +V G D E
Sbjct: 384 DLCFEKSIDTLFYDADGLGAGCRGDARVINEKRRELGLSEINVESFRGSGSVHDPEGEMV 443
Query: 408 -------FCRNRRTELHVKMA-------DWLEFASLINHS--------------GLIQNL 439
F N + + + LE L+
Sbjct: 444 EKRLNKDFFANLKAQSWWSLRLRFQETFRALEGRDYDPDMIISLSSEDIDAKELALLTTE 503
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
S ++ G++ + +K+ G S + +D +M F
Sbjct: 504 LSQPTYTKNGVGKILV-NKQPDGTASPNRADSVMICF 539
>gi|298480040|ref|ZP_06998239.1| PBSX family phage terminase [Bacteroides sp. D22]
gi|298273849|gb|EFI15411.1| PBSX family phage terminase [Bacteroides sp. D22]
Length = 476
Score = 96.7 bits (239), Expect = 9e-18, Method: Composition-based stats.
Identities = 55/281 (19%), Positives = 105/281 (37%), Gaps = 33/281 (11%)
Query: 216 TERNANRFWIMTSNPRRLSGKFYEIFNKP-----LDDWKRFQID-TRTVEGIDPSFHEGI 269
E R +T NP++ Y+ F KP L ++ + + IDP + EG+
Sbjct: 184 NELGLRRKLFITCNPKKN--WMYDTFYKPDKKGELPEYMYYLACLVQENPFIDPDYIEGL 241
Query: 270 IARYGLDSDVTRVEVC-GQFP-QQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
V R + G + + ++ + I E + I G DIA
Sbjct: 242 KTTK---DKVKRERLLKGNWEYDDNPNALCSHDAICEIFGNKISIKTGTNYITG-DIARF 297
Query: 328 GGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR--PDAIIIDANNTGARTCD 385
G D + + G I L + + I +KYR I+D + G D
Sbjct: 298 GADYARLAVWDGWHIIELQCFPVSKTTDIQTWIINKQKKYRIPNHKCIVDEDGVGGGVVD 357
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL---------EFASLINHSGLI 436
++ G+ + + E +N +T+ K+AD + + S + +I
Sbjct: 358 NCDIQGF-----VNNSTPFNGENYQNLQTQCGYKLADHINATEVGIDEDLISTADKEEII 412
Query: 437 QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ L+ L+++ + G+L ++ K ++ S D+ D +
Sbjct: 413 RELEQLQTWKADSDGKLKLKPKEEIKMDIGCSPDWRDMFLM 453
>gi|167763812|ref|ZP_02435939.1| hypothetical protein BACSTE_02192 [Bacteroides stercoris ATCC
43183]
gi|167697928|gb|EDS14507.1| hypothetical protein BACSTE_02192 [Bacteroides stercoris ATCC
43183]
Length = 476
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 55/281 (19%), Positives = 105/281 (37%), Gaps = 33/281 (11%)
Query: 216 TERNANRFWIMTSNPRRLSGKFYEIFNKP-----LDDWKRFQID-TRTVEGIDPSFHEGI 269
E R +T NP++ Y+ F KP L ++ + + IDP + EG+
Sbjct: 184 NELGLRRKLFITCNPKKN--WMYDTFYKPDKKGELPEYMYYLACLVQENPFIDPDYIEGL 241
Query: 270 IARYGLDSDVTRVEVC-GQFP-QQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
V R + G + + ++ + I E + I G DIA
Sbjct: 242 KTTK---DKVKRERLLKGNWEYDDNPNALCSHDAICEIFGNKISIKTGTNYITG-DIARF 297
Query: 328 GGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR--PDAIIIDANNTGARTCD 385
G D + + G I L + + I +KYR I+D + G D
Sbjct: 298 GADYARLAVWDGWHIIELQCFPVSKTTDIQTWIINKQKKYRIPNHKCIVDEDGVGGGVVD 357
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL---------EFASLINHSGLI 436
++ G+ + + E +N +T+ K+AD + + S + +I
Sbjct: 358 NCDIQGF-----VNNSTPFNGENYQNLQTQCGYKLADHINATEVGIDEDLISTADKEEII 412
Query: 437 QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ L+ L+++ + G+L ++ K ++ S D+ D +
Sbjct: 413 RELEQLQTWEADSDGKLKLKPKEEIKMDIGCSPDWRDMFLM 453
>gi|168260952|ref|ZP_02682925.1| phage terminase, large subunit, pbsx family [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|205349913|gb|EDZ36544.1| phage terminase, large subunit, pbsx family [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
Length = 471
Score = 95.6 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 65/480 (13%), Positives = 137/480 (28%), Gaps = 79/480 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTI-RKTFSEIWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGART--------------------------CDYLEMLGYHVYR 396
L + D + D + GA D L G
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEVFSGKKITATMFKGSESPFDEDALYQAGAWADE 343
Query: 397 -VLGQKRAVDLEFCRNRRTELHVKMADWLEFA---------SLINH-------------- 432
V G + RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L L ++ N G+L +E K+ G S + +D LM + D+
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYS 462
>gi|163716617|gb|ABY40529.1| putative TerL [Burkholderia phage Bups phi1]
Length = 531
Score = 95.2 bits (235), Expect = 3e-17, Method: Composition-based stats.
Identities = 63/343 (18%), Positives = 106/343 (30%), Gaps = 57/343 (16%)
Query: 190 TYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ DE++ + L T + S P + F + +
Sbjct: 195 DRASFYVVDESAFLERPQLVDASLSATTNCRQD-----ISTPNGMGNSFAQ--RRHSGKI 247
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
K F R D +++ +A LD V E+ + IP ++ AL
Sbjct: 248 KVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEIDINYAASVEGVVIPSAWVQAALGA 305
Query: 309 EPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLV 364
+P G D+A+EG D R G ++EHL WS D+ T +++ G+
Sbjct: 306 HVKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLLEHLESWSGVGGDIFGTVDRVLGIC 365
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRAVDLE------- 407
+ + DA+ GA +L G D E
Sbjct: 366 DVRDYEVFDYDADGLGAGVRGDARVLNEQRVAAGKRSIRNEPFRGSGPVYDPEGEMVKER 425
Query: 408 ----FCRNRRTELHVKMADWL----------------EFASLINHSGLIQNLK---SLKS 444
+ N + + + E S+ L S +
Sbjct: 426 KNKDYFANLKAQSWWALRLRFQATYRAVVEGKPFDPDEIISIDPDLPERAALSMELSQPT 485
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
F V G++ I+ K G KS + +D +M A P +D
Sbjct: 486 FTVNGVGKIVID-KAPDGTKSPNLADAVMI--AYQPAVRGIDI 525
>gi|260868683|ref|YP_003235085.1| putative terminase large subunit [Escherichia coli O111:H- str.
11128]
gi|293446697|ref|ZP_06663119.1| phage terminase large subunit [Escherichia coli B088]
gi|257765039|dbj|BAI36534.1| putative terminase large subunit [Escherichia coli O111:H- str.
11128]
gi|291323527|gb|EFE62955.1| phage terminase large subunit [Escherichia coli B088]
gi|323177130|gb|EFZ62720.1| phage terminase, large subunit, PBSX family [Escherichia coli 1180]
Length = 471
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 63/480 (13%), Positives = 137/480 (28%), Gaps = 79/480 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L L ++ N G+L +E K+ G S + +D LM + D+
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYS 462
>gi|237704849|ref|ZP_04535330.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
gi|226901215|gb|EEH87474.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
gi|315288241|gb|EFU47640.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
110-3]
Length = 471
Score = 94.8 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 63/480 (13%), Positives = 137/480 (28%), Gaps = 79/480 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVYGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L L ++ N G+L +E K+ G S + +D LM + D+
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYS 462
>gi|324019922|gb|EGB89141.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
117-3]
Length = 471
Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 63/480 (13%), Positives = 137/480 (28%), Gaps = 79/480 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKCIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVYGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L L ++ N G+L +E K+ G S + +D LM + D+
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYS 462
>gi|294492319|gb|ADE91075.1| phage terminase, large subunit, PBSX family [Escherichia coli
IHE3034]
Length = 471
Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 64/480 (13%), Positives = 137/480 (28%), Gaps = 79/480 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + N
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPNDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L L ++ N G+L +E K+ G S + +D LM + D+
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYS 462
>gi|307544683|ref|YP_003897162.1| hypothetical protein HELO_2093 [Halomonas elongata DSM 2581]
gi|307216707|emb|CBV41977.1| K06909 [Halomonas elongata DSM 2581]
Length = 531
Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 51/338 (15%), Positives = 109/338 (32%), Gaps = 57/338 (16%)
Query: 194 AIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
I DE++ + L T + S P + F + + F
Sbjct: 199 FYIVDESAFLERPHLVDASLSATTNCRQD-----VSTPNGMGNPFAQ--RRHSGKISVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
R D +++ + LD E+ + IP ++ A++ ++
Sbjct: 252 FHWRDDPRKDDAWYAKQVDE--LDPVTVAQEIDINYSASVEGVLIPSAWVQAAVDAHKKL 309
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYR 368
+ + D+A+EG D R G +++ + +W+ +D+ T K +++
Sbjct: 310 GIEITGERLGALDVADEGKDQNAYAGRHGILLDLVDEWTGKGSDIFGTVQKAFDHTDEHG 369
Query: 369 PDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQK-----------RAVDLE 407
DA+ G+ ++ V G + + +
Sbjct: 370 GSRFDYDADGLGSGVRGDARVINEQRAEQKRPKLKVNPFRGSGGVIEPDKEMVPKRKNKD 429
Query: 408 FCRNRRTELHVKM--------ADWLEFASLINHS------------GLIQNLKSLKSFIV 447
F N + + + +E L+ L S ++ V
Sbjct: 430 FFANLKAQAWWALRLRFQRTYRAVVEGMEFDPDDIISIDSRLPILSKLMLEL-SQPTYHV 488
Query: 448 PNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDM 485
TG++ ++ K +G KS + +D +M +A N +D
Sbjct: 489 NGTGKVVVD-KAPEGTKSPNLADAVMILYAPNKSVTDR 525
>gi|157159763|ref|YP_001457081.1| PBSX family phage terminase large subunit [Escherichia coli HS]
gi|300935792|ref|ZP_07150755.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
21-1]
gi|157065443|gb|ABV04698.1| phage terminase, large subunit, pbsx family [Escherichia coli HS]
gi|300459025|gb|EFK22518.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
21-1]
Length = 471
Score = 94.4 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 63/480 (13%), Positives = 137/480 (28%), Gaps = 79/480 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINDGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L L ++ N G+L +E K+ G S + +D LM + D+
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYS 462
>gi|91211665|ref|YP_541651.1| terminase large subunit [Escherichia coli UTI89]
gi|117624554|ref|YP_853467.1| phage terminase large subunit [Escherichia coli APEC O1]
gi|218559279|ref|YP_002392192.1| Terminase large subunit [Escherichia coli S88]
gi|91073239|gb|ABE08120.1| terminase large subunit [Escherichia coli UTI89]
gi|115513678|gb|ABJ01753.1| phage terminase large subunit [Escherichia coli APEC O1]
gi|148566126|gb|ABQ88401.1| phage terminase large subunit [Enterobacteria phage CUS-3]
gi|218366048|emb|CAR03793.1| Terminase large subunit [Escherichia coli S88]
gi|307626097|gb|ADN70401.1| terminase large subunit [Escherichia coli UM146]
gi|323948780|gb|EGB44679.1| phage terminase large subunit [Escherichia coli H252]
Length = 471
Score = 94.0 bits (232), Expect = 5e-17, Method: Composition-based stats.
Identities = 63/480 (13%), Positives = 137/480 (28%), Gaps = 79/480 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L L ++ N G+L +E K+ G S + +D LM + D+
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYS 462
>gi|167725769|ref|ZP_02409005.1| hypothetical protein BpseD_42528 [Burkholderia pseudomallei DM98]
Length = 517
Score = 93.6 bits (231), Expect = 7e-17, Method: Composition-based stats.
Identities = 63/343 (18%), Positives = 105/343 (30%), Gaps = 57/343 (16%)
Query: 190 TYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ DE++ + L T + S P + F + +
Sbjct: 181 DRASFYVVDESAFLERPQLVDASLSATTNCRQD-----ISTPNGMGNSFAQ--RRHSGKI 233
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
K F R D +++ +A LD V E+ + IP ++ AL
Sbjct: 234 KVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEIDINYAASVEGVVIPSAWVQAALGA 291
Query: 309 EPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLV 364
+P G D+A+EG D R G ++EHL WS D+ T ++ G+
Sbjct: 292 HVKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLLEHLESWSGVGGDIFGTVDRALGIC 351
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRAVDLE------- 407
+ + DA+ GA +L G D E
Sbjct: 352 DVRDYEVFDYDADGLGAGVRGDARVLNEQRVAAGKRSIRNEPFRGSGPVYDPEGEMVKER 411
Query: 408 ----FCRNRRTELHVKMADWL----------------EFASLINHSGLIQNLK---SLKS 444
+ N + + + E S+ L S +
Sbjct: 412 KNKDYFANLKAQSWWALRLRFQATYRAVVEGKPFDPDEIISIDPDLPERAALSMELSQPT 471
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
F V G++ I+ K G KS + +D +M A P +D
Sbjct: 472 FTVNGVGKIVID-KAPDGTKSPNLADAVMI--AYQPAVRGIDI 511
>gi|41057280|ref|NP_958178.1| gene 2 protein [Enterobacteria phage Sf6]
gi|191165541|ref|ZP_03027382.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
gi|218695968|ref|YP_002403635.1| Terminase large subunit [Escherichia coli 55989]
gi|331678314|ref|ZP_08378989.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
gi|33334159|gb|AAQ12192.1| gene 2 protein [Shigella phage Sf6]
gi|190904464|gb|EDV64172.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
gi|218352700|emb|CAU98482.1| Terminase large subunit [Escherichia coli 55989]
gi|324114096|gb|EGC08069.1| phage terminase large subunit [Escherichia fergusonii B253]
gi|331074774|gb|EGI46094.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
Length = 470
Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats.
Identities = 62/466 (13%), Positives = 134/466 (28%), Gaps = 79/466 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMY 474
L L ++ N G+L +E K+ G S + +D LM
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMM 448
>gi|13559866|ref|NP_112076.1| terminase large subunit [Enterobacteria phage HK620]
gi|13517602|gb|AAK28891.1|AF335538_43 terminase large subunit [Salmonella phage HK620]
Length = 470
Score = 93.2 bits (230), Expect = 8e-17, Method: Composition-based stats.
Identities = 62/466 (13%), Positives = 134/466 (28%), Gaps = 79/466 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGENIL 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMY 474
L L ++ N G+L +E K+ G S + +D LM
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMM 448
>gi|325497784|gb|EGC95643.1| gene 2 protein [Escherichia fergusonii ECD227]
Length = 470
Score = 93.2 bits (230), Expect = 9e-17, Method: Composition-based stats.
Identities = 62/466 (13%), Positives = 134/466 (28%), Gaps = 79/466 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVYGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMY 474
L L ++ N G+L +E K+ G S + +D LM
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMM 448
>gi|293604595|ref|ZP_06686998.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
gi|292817011|gb|EFF76089.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
Length = 463
Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 54/321 (16%), Positives = 99/321 (30%), Gaps = 49/321 (15%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--QI 253
+E G + I + + A + + NP L F + L I
Sbjct: 135 WIEEGEGLTEEQWSIIDPTIRKEGAEVWVLW--NP-HLITDFVQAKLPALLGADCIIRHI 191
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPC 311
+ + + D D R GQ D S I + IE A++ +
Sbjct: 192 NYPDNPFLSATAKRKAERLKEADPDAYRHIYLGQPLSSDDASVIKFHWIEAAVDAHLKLG 251
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKYRP 369
+ +G D+A+ G D + G + + L +W + +L + + V R
Sbjct: 252 IELGGARTVGYDVADSGADKNACSVFDGAICDELDEWAAPEDELNQSTKRAWAHV---RN 308
Query: 370 DAIIIDANNTGARTCDYLE----MLGYHVYRVLGQKRAVDLEF---------CRNRRTEL 416
++ D+ GA L GYH + G + D E+ N + +
Sbjct: 309 GILVYDSIGVGAHVGSTLADAGIRTGYHKFNAGGAVISPDKEYAPKIKNKEKFENLKAQA 368
Query: 417 HVKMADWLE--------------------FASLINHSGLIQNLKSLKSFIVPNTGELAIE 456
+AD L + + L L + + G +E
Sbjct: 369 WQDVADRLRNTYNAVTKGMVFPASELISISSGISKLEQLKIELSAPRK-RYSKRGLDMVE 427
Query: 457 SKR---VKGAKSTDYSDGLMY 474
+K +G S + +D +
Sbjct: 428 TKEDMARRGIPSPNLADSFIM 448
>gi|222032743|emb|CAP75482.1| Terminase large subunit [Escherichia coli LF82]
Length = 470
Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 62/466 (13%), Positives = 134/466 (28%), Gaps = 79/466 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADSLYLTYRAVVHGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMY 474
L L ++ N G+L +E K+ G S + +D LM
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMM 448
>gi|168239626|ref|ZP_02664684.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197287704|gb|EDY27095.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 470
Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 62/466 (13%), Positives = 134/466 (28%), Gaps = 79/466 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYAAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILVPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEVIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMY 474
L L ++ N G+L +E K+ G S + +D LM
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMM 448
>gi|323936486|gb|EGB32774.1| phage terminase large [Escherichia coli E1520]
Length = 470
Score = 92.9 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 62/466 (13%), Positives = 134/466 (28%), Gaps = 79/466 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDL------------ 406
L + D + D + GA T + G + D
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDGPYQAGAWADE 343
Query: 407 -----------EFCRNRRTELHVKMADWLEFA---------SLINH-------------- 432
+ RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIDEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMY 474
L L ++ N G+L +E K+ G S + +D LM
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMM 448
>gi|300897414|ref|ZP_07115839.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
198-1]
gi|300358826|gb|EFJ74696.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
198-1]
Length = 470
Score = 92.1 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 62/466 (13%), Positives = 134/466 (28%), Gaps = 79/466 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGSDHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMY 474
L L ++ N G+L +E K+ G S + +D LM
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMM 448
>gi|324114526|gb|EGC08494.1| hypothetical protein ERIG_00518 [Escherichia fergusonii B253]
Length = 540
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/396 (14%), Positives = 122/396 (30%), Gaps = 65/396 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R D ++ + + V E+ + IP ++ A++
Sbjct: 252 FHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 311 GIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDN 370
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L V GQ
Sbjct: 371 LEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQA 430
Query: 402 RAVDLEFCRNRRTELHVKMADWL--------EFASLINH------------SGLIQNLKS 441
++ +F N + + ++ E + LI L S
Sbjct: 431 ARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEIISISSSMALKDKLIIEL-S 489
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + + G++ I+ K+ G +S + +D +M +A
Sbjct: 490 QPTYSINSVGKIVID-KQPDGTRSPNLADSVMINYA 524
>gi|238027169|ref|YP_002911400.1| hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1]
gi|237876363|gb|ACR28696.1| Hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1]
Length = 531
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 59/332 (17%), Positives = 101/332 (30%), Gaps = 55/332 (16%)
Query: 190 TYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ DE++ + L T + S P + F + +
Sbjct: 195 DRASFYVVDESAFLERPQLVDASLSATTNCRQD-----ISTPNGMGNSFAQ--RRHSGKI 247
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
K F R D +++ +A LD V E+ + IP ++ AL
Sbjct: 248 KVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEIDINYAASVEGVVIPSAWVQAALGA 305
Query: 309 EPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLV 364
P G D+A+EG D R G ++EHL WS D+ T ++ G+
Sbjct: 306 HVKLGISPSGARRGGLDVADEGKDKNAFAGRYGFLLEHLESWSGVGGDIFGTVDRALGIC 365
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRAVDL-------- 406
+ + DA+ GA +L G D
Sbjct: 366 DVRGYEVFDYDADGLGAGVRGDARVLNEQRAAAGKRSIRSEPFRGSGPVYDPDGEMVKER 425
Query: 407 ---EFCRNRRTELHVKMADWL----------------EFASLINHSGLIQNLK---SLKS 444
++ N + + + E S+ L S +
Sbjct: 426 KNKDYFANLKAQSWWALRLRFQATYRAVVEGKPFDPDEIISIDPDLPERAALSMELSQPT 485
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
F V G++ I+ K G KS + +D +M +
Sbjct: 486 FTVNGVGKIVID-KAPDGTKSPNLADAVMIAY 516
>gi|260856407|ref|YP_003230298.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
gi|257755056|dbj|BAI26558.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
Length = 470
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 62/466 (13%), Positives = 133/466 (28%), Gaps = 79/466 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + + ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHTKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDL------------ 406
L + D + D + GA T + G + D
Sbjct: 284 LAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDGPYQAGAWADE 343
Query: 407 -----------EFCRNRRTELHVKMADWLEFA---------SLINH-------------- 432
+ RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMY 474
L L ++ N G+L +E K+ G S + +D LM
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMM 448
>gi|330910791|gb|EGH39301.1| phage terminase, large subunit [Escherichia coli AA86]
Length = 540
Score = 91.7 bits (226), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/397 (14%), Positives = 127/397 (31%), Gaps = 67/397 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
R D ++ + +D+ V E+ + IP ++ A++
Sbjct: 252 FHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIK 309
Query: 312 --PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKY 367
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 310 LGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQD 369
Query: 368 RPDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQ 400
+ D + GA + L V GQ
Sbjct: 370 NLEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQ 429
Query: 401 KRAVDLEFCRNRRTELHVKMADWLE--------------------FASLINHSGLIQNLK 440
++ +F N + + ++ + +++ + LI L
Sbjct: 430 AARLNKDFFANAKAQSWWRLRKLFQNTYRAVVEGMAYNPDEIISISSAMASKDKLIIEL- 488
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
S ++ + G++ ++ K+ G KS + +D +M ++A
Sbjct: 489 SQPTYSINGVGKIVVD-KQPDGTKSPNLADSVMISYA 524
>gi|319789040|ref|YP_004150673.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1]
gi|317113542|gb|ADU96032.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1]
Length = 419
Score = 91.7 bits (226), Expect = 3e-16, Method: Composition-based stats.
Identities = 70/419 (16%), Positives = 146/419 (34%), Gaps = 58/419 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+Q+E ++ +D+H + I R GK+ + ++ +T+P +++
Sbjct: 6 PYQIEIVKGIDSHKFSV------------IKMARQTGKSFVVSYWATRRATTKPNHAIVV 53
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
++ +E Q L +K ++++ L ++ D L ++ + S +
Sbjct: 54 VSPTERQ------------SKLFVDKVKLHIKAMRLTGVKFFEDTELKKLEVNFPNGSQI 101
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNP 230
PD G +I DE + + + + +T + + + S P
Sbjct: 102 --IALPANPDGIRGFSGD----VIMDEVAFFKNWQEVYRAVFPIITRK-KDYKLVAISTP 154
Query: 231 RRLSGKFYEIF--NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
+ FY ++ ++ W R+ ++ + + D R E +F
Sbjct: 155 FGKNDLFYYLWSISENNPKWFRYSLNIFEAVAKGLKVDVEELRAGIKNEDAWRTEYLVEF 214
Query: 289 PQQDIDSFIPLNIIEEA-LNREPCPDPY-----APLIMGCDIAEEGGDNTVVV----LRR 338
+ D+ +P +I++ + +E L G D+ D TV+ L
Sbjct: 215 IDEA-DAVLPYELIQKCEMPKEELLVEDIKELKGELYCGVDVGRR-KDLTVITLLEKLGD 272
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML-GYHVYRV 397
+ + + SK R IS + + ID G + + L+ G V V
Sbjct: 273 VLYVRRIEELSKKPFREQLELISHYA--HYARRLAIDETGLGMQLAEELKERFGSKVIPV 330
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIE 456
A + E + L K D + L ++L S++ V N G + E
Sbjct: 331 YF--SAKNKEELAEK---LRAKFQD--RLIRVPADPDLREDLHSVRK-TVTNAGNVRYE 381
>gi|268589862|ref|ZP_06124083.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
DSM 1131]
gi|291314845|gb|EFE55298.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
DSM 1131]
Length = 470
Score = 91.7 bits (226), Expect = 3e-16, Method: Composition-based stats.
Identities = 67/487 (13%), Positives = 138/487 (28%), Gaps = 79/487 (16%)
Query: 66 CLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 3 QINPIFMPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILC 49
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
E+ +S + + + + + + + +
Sbjct: 50 ARELQNSISDSVIRLLEDTIEREGYNNEFEIQRTMIKHLGTGAEFMFYGIKNNPTKIKSL 109
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-K 243
G +EA ++ + + N+ W+ NP+ + Y+ F
Sbjct: 110 EGVD-----VCWVEEAEAVTKESWDILIPTIRKPNSE-IWVSF-NPKNILDDTYQRFVVN 162
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
P DD + + + + R G+ + I +E
Sbjct: 163 PPDDICLLTANYTDNPHFPDVLRLEMEECKRKNPTLYRHIWLGEPVSASDMAIIKREWLE 222
Query: 304 EALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS 361
A + ++ +I D ++ GGD +R G V++ + + D+ + +
Sbjct: 223 AATDAHKKLGWKAKGAIIATHDPSDVGGDAKGYAMRHGSVVKRISEGLLMDVNDGADWAT 282
Query: 362 GLVEKYRPDAIIIDANNTGART--------------------------CDYLEMLGYHVY 395
+ D + D + GA D L G
Sbjct: 283 EKAIQDGADHFLWDGDGLGAALRRQVTDAFTGKQTTVTMFKGSESPFDEDALYQSGAWAD 342
Query: 396 RVLGQKRAVDL-EFCRNRRTELHVKMADWL-------EFASLINHSGLIQ---------- 437
V+ + + + RN+R + + +AD L E N +I
Sbjct: 343 EVVSGDNSRTIGDVFRNKRAQFYYALADRLYLTYRAVEHGEYANPDDMISFDKEAIGEQM 402
Query: 438 ------NLKSLKSFIVPNTGELAIESKRVK----GAKSTDYSDGLMYTFAENPPRSDMDF 487
L ++ G+L + +K G S + +D LM + D
Sbjct: 403 LEKLFAELTQIQR-KFNGNGKLELMTKVDMKVKLGIPSPNLADSLMMSMYCPVIIHDDTE 461
Query: 488 GRCPSYQ 494
PS
Sbjct: 462 IYVPSSS 468
>gi|85716479|ref|ZP_01047450.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter
sp. Nb-311A]
gi|85696668|gb|EAQ34555.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter
sp. Nb-311A]
Length = 250
Score = 91.3 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 50/262 (19%), Positives = 78/262 (29%), Gaps = 38/262 (14%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ E + NP + + + GKTT+ A + L G V
Sbjct: 24 PDPWQAELLR----------LNPKRALLLCSRQS----GKTTVTALMALHRAIYETGALV 69
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ ++ S Q L ++ K L ++
Sbjct: 70 VIVSPSNRQSGEML-RQIKKLHGSLKGAPELVGDAVLKVELA--------------NGSR 114
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ +E+ G +I DEAS D + + L R A+ I + P
Sbjct: 115 IIALPGTEKTIRGIAG-----VSLVIIDEASRVDDELLAAVRPMLATR-ADGSLIALTTP 168
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
G FYE ++ W R ++ I F + G E F
Sbjct: 169 AGKRGFFYEAWHSDDQTWHRVRVAASDCPRISKEFLADELRSLG--PARYSEEYELAFVD 226
Query: 291 QDIDSFIPLNIIEEALNREPCP 312
+F P +IE A E P
Sbjct: 227 DAASAF-PTAVIERAFTTEVEP 247
>gi|298381518|ref|ZP_06991117.1| phage terminase large subunit [Escherichia coli FVEC1302]
gi|298278960|gb|EFI20474.1| phage terminase large subunit [Escherichia coli FVEC1302]
Length = 470
Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 61/466 (13%), Positives = 133/466 (28%), Gaps = 79/466 (16%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIFKREWLEA 223
Query: 305 ALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A + ++ ++ D ++ G D R G V++ + + D+ + +
Sbjct: 224 ATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATS 283
Query: 363 LVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF---------- 408
L + D + D + GA T + G + D +
Sbjct: 284 LAIEDGSDHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADE 343
Query: 409 -------------CRNRRTELHVKMADWLEFA---------SLINH-------------- 432
RN+R + + +AD L + +
Sbjct: 344 VVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKML 403
Query: 433 SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMY 474
L L ++ N G+L +E K+ G S + +D LM
Sbjct: 404 EKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMM 448
>gi|167753387|ref|ZP_02425514.1| hypothetical protein ALIPUT_01661 [Alistipes putredinis DSM 17216]
gi|167658012|gb|EDS02142.1| hypothetical protein ALIPUT_01661 [Alistipes putredinis DSM 17216]
Length = 472
Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/259 (16%), Positives = 92/259 (35%), Gaps = 31/259 (11%)
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFP-QQDIDSFIPLNIIEEALNREPCPDP 314
I+ + E + + V + + G + + ++ + I E +
Sbjct: 230 DNPFIEKDYIEALKST---TDKVKKERLLKGNWDYDDNPNALCSYDNIREIFYPKIH-TR 285
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR--PDAI 372
+ DIA G D +++ G I + ++ I L K+R I
Sbjct: 286 TGIKYITADIARFGSDRARILVWDGWAIIEQVSFDRSATTEIAACIESLAAKHRIPRYRI 345
Query: 373 IIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH 432
I D + G D + G+ + + ++ E N +T+ K+A+ + ++
Sbjct: 346 IADEDGVGGGVVDMCRISGF-----VNNSQCLNGENFSNLQTQCGYKLANKINSFAISFD 400
Query: 433 SGL--------IQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPP 481
L + L+ L+++ V N +L ++ K + +S D+ D L+
Sbjct: 401 CELSDGQKDEITEELEQLQTWNVDNDRKLFLKPKDEIKQDIGRSPDWRDALLM------- 453
Query: 482 RSDMDFGRCPSYQYEGVDL 500
R D+ + E + L
Sbjct: 454 RVWFDYKQIIPLSKEDLGL 472
>gi|238765385|ref|ZP_04626308.1| Gp33 TerL [Yersinia kristensenii ATCC 33638]
gi|238696377|gb|EEP89171.1| Gp33 TerL [Yersinia kristensenii ATCC 33638]
Length = 501
Score = 90.9 bits (224), Expect = 5e-16, Method: Composition-based stats.
Identities = 58/402 (14%), Positives = 121/402 (30%), Gaps = 64/402 (15%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F S W + ++ + + + +
Sbjct: 106 ALFWKARKFVETLPSEFRGSWSEKKHAPYMRVEFPDTGAVIKGEAGDNIGR-----GDRT 160
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DE++ + I L++ R I S+ ++ F + + F
Sbjct: 161 TLYFVDESAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMNNPFAQ--KRHGGKIPVFT 214
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
R+ D + + V E+ + IP ++ A++
Sbjct: 215 FHWRSDPRKDDEW-YRKECEKIDNPVVVAQELDLNYQASAEGILIPSEWVQAAIDAHIHL 273
Query: 313 D--PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNN--KISGLVEKYR 368
D P + D+A+EG D +R G +++ + +WS + K+ G ++Y
Sbjct: 274 DIQPSGARLGAMDVADEGRDKNGFAIRYGFLLQDVKEWSGEGSDIYASVVKVFGYCDEYG 333
Query: 369 PDAIIIDANNTGAR------TCDYLEM---------------------LGYHVYRVLGQK 401
D D + GA + L V G+
Sbjct: 334 LDEFRFDEDGLGAGVRGDARVINELRQSERLGPITATPFRGSGAVFDPDDEAVIGDNGKP 393
Query: 402 RAVDLEFCRNRRTELHVKMADWLE-------------------FASLINHSGLIQNLKSL 442
++ +F N + + + +++ N LI L S
Sbjct: 394 ARLNKDFFANAKAQGWWHLRKLFRNTFRAMKGMDYNPDEIISINSTMENKDRLIMEL-SQ 452
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
++ G++ I+ K+ +G KS + +D +M +A D
Sbjct: 453 PTWSKNAVGKIVID-KQPEGTKSPNLADAVMINYAPMDSSLD 493
>gi|300824951|ref|ZP_07105051.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|300522580|gb|EFK43649.1| conserved hypothetical protein [Escherichia coli MS 119-7]
Length = 540
Score = 90.9 bits (224), Expect = 5e-16, Method: Composition-based stats.
Identities = 58/396 (14%), Positives = 121/396 (30%), Gaps = 65/396 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R D ++ + + V E+ + IP ++ A++
Sbjct: 252 FHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + KI G E+
Sbjct: 311 GIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKIFGFCEQDN 370
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L V GQ
Sbjct: 371 LEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQA 430
Query: 402 RAVDLEFCRNRRTELHVKMADWL--------EFASLINH------------SGLIQNLKS 441
++ +F N + + ++ E + LI L S
Sbjct: 431 ARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEIISISSSMALKDKLIIEL-S 489
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + G++ I+ K+ G +S + +D +M +A
Sbjct: 490 QPTYSINGVGKIVID-KQPDGTRSPNLADSVMINYA 524
>gi|254160843|ref|YP_003043951.1| hypothetical protein ECB_00733 [Escherichia coli B str. REL606]
gi|253972744|gb|ACT38415.1| conserved hypothetical protein [Escherichia coli B str. REL606]
Length = 540
Score = 90.9 bits (224), Expect = 5e-16, Method: Composition-based stats.
Identities = 57/396 (14%), Positives = 122/396 (30%), Gaps = 65/396 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R D ++ + + V E+ + IP ++ A++
Sbjct: 252 FHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 311 GIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDN 370
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L + V GQ
Sbjct: 371 LEEFRFDEDGLGAGVRGDARAINELRNVARRPSILATPFRGSGAVFDPDDEAVRGDNGQA 430
Query: 402 RAVDLEFCRNRRTELHVKMADWL--------EFASLINH------------SGLIQNLKS 441
++ +F N + + ++ E + LI L S
Sbjct: 431 ARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEIISISSSMALKDKLIIEL-S 489
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + G++ I+ K+ G +S + +D +M +A
Sbjct: 490 QPTYSINGVGKIVID-KQPDGTRSPNLADSVMINYA 524
>gi|168467237|ref|ZP_02701079.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL317]
gi|195630466|gb|EDX49092.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL317]
Length = 539
Score = 90.6 bits (223), Expect = 6e-16, Method: Composition-based stats.
Identities = 54/394 (13%), Positives = 117/394 (29%), Gaps = 62/394 (15%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F + W + ++ + + + +
Sbjct: 143 ALFWKVRKFIATLPAEFRGGWDERKHSRFMSVEFPDTGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYFVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMNNPFAQ--KRHSGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R+ D + + + E+ + IP ++ A++
Sbjct: 252 FHWRSDPRKDDEW-YRKECEKIDNPIIVAQELDLNYQASAEGILIPSEWVQAAVDAHIKL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYR 368
P + D+A+EG D LR G ++ + +WS +D+ + K+ GL + +
Sbjct: 311 GIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEWSGKGSDIYDSVVKVFGLCDDFG 370
Query: 369 PDAIIIDANNTGART---------------CDYL-----EMLGYHVYRV-------LGQK 401
D D + GA D + G Y G+
Sbjct: 371 ADEFRFDEDGLGAGVRGDARAINELREAEGTDQITATPFRGSGRVFYPENEAVPGDNGKP 430
Query: 402 RAVDLEFCRNRRTELHVKMAD-------WLEFASLINHS-----------GLIQNLKSLK 443
++ +F N + + + L+ + S
Sbjct: 431 SRLNKDFFANAKAQGWWHLRKLFRNTFRALKGMEYDPDEIISISSTMENKDRLLMELSQP 490
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ G++ ++ K+ G KS + +D +M +A
Sbjct: 491 TWSKNAVGKILVD-KQPDGTKSPNLADSVMIAYA 523
>gi|194430118|ref|ZP_03062621.1| gp33 TerL [Escherichia coli B171]
gi|215487586|ref|YP_002330017.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|260845222|ref|YP_003223000.1| putative terminase large subunit [Escherichia coli O103:H2 str.
12009]
gi|194411828|gb|EDX28147.1| gp33 TerL [Escherichia coli B171]
gi|215265658|emb|CAS10061.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|257760369|dbj|BAI31866.1| predicted terminase large subunit [Escherichia coli O103:H2 str.
12009]
gi|309702924|emb|CBJ02255.1| putative phage gp33 TerL [Escherichia coli ETEC H10407]
gi|323159191|gb|EFZ45181.1| gp33 TerL [Escherichia coli E128010]
Length = 540
Score = 90.2 bits (222), Expect = 7e-16, Method: Composition-based stats.
Identities = 57/396 (14%), Positives = 121/396 (30%), Gaps = 65/396 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R D ++ + + V E+ + IP ++ A++
Sbjct: 252 FHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 311 GIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDN 370
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L V GQ
Sbjct: 371 LEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQA 430
Query: 402 RAVDLEFCRNRRTELHVKMADWL--------EFASLINH------------SGLIQNLKS 441
++ +F N + + ++ E + LI L S
Sbjct: 431 ARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEIISISSSMALKDKLIIEL-S 489
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + G++ I+ K+ G +S + +D +M +A
Sbjct: 490 QPTYSINGVGKIVID-KQPDGTRSPNLADSVMINYA 524
>gi|168820654|ref|ZP_02832654.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|205342611|gb|EDZ29375.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
Length = 539
Score = 90.2 bits (222), Expect = 7e-16, Method: Composition-based stats.
Identities = 52/394 (13%), Positives = 116/394 (29%), Gaps = 62/394 (15%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F + W + ++ + + + +
Sbjct: 143 ALFWKVRKFIATLPAEFRGGWDERKHSRFMSVEFPDTGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYFVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMNNPFAQ--KRHSGKISVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R+ D + + + E+ + IP ++ A++
Sbjct: 252 FHWRSDPRKDDEW-YRKECEKIDNPIIVAQELDLNYQASAEGILIPSEWVQAAVDAHIKL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYR 368
P + D+A+EG D LR G ++ + +WS +D+ + K+ GL + +
Sbjct: 311 GIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEWSGKGSDIYDSVVKVFGLCDDFG 370
Query: 369 PDAIIIDANNTGART---------------CDYLEMLGYHVYRV------------LGQK 401
D D + GA D + + G+
Sbjct: 371 ADEFRFDEDGLGAGVRGDARAINELREAEGTDQITATPFRGSGSVFYPENEAVPGDNGKP 430
Query: 402 RAVDLEFCRNRRTELHVKMAD-------WLEFASLINHS-----------GLIQNLKSLK 443
++ +F N + + + L+ + S
Sbjct: 431 ARLNKDFFANAKAQGWWHLRKLFRNTFRALKGMEYDPDEIISISSTMENKDRLLMELSQP 490
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ G++ ++ K+ G KS + +D +M +A
Sbjct: 491 TWSKNAVGKILVD-KQPDGTKSPNLADSVMIAYA 523
>gi|218555117|ref|YP_002388030.1| hypothetical protein ECIAI1_2647 [Escherichia coli IAI1]
gi|218361885|emb|CAQ99485.1| conserved hypothetical protein from bacteriophage origin
[Escherichia coli IAI1]
Length = 540
Score = 90.2 bits (222), Expect = 8e-16, Method: Composition-based stats.
Identities = 57/396 (14%), Positives = 121/396 (30%), Gaps = 65/396 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R D ++ + + V E+ + IP ++ A++
Sbjct: 252 FHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 311 GIQPTGKRLGAMDVADEGRDKNAFSTRHGFLMENVREWSGVGSDIYQSVEKVFGFCEQDN 370
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L V GQ
Sbjct: 371 LEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQA 430
Query: 402 RAVDLEFCRNRRTELHVKMADWL--------EFASLINH------------SGLIQNLKS 441
++ +F N + + ++ E + LI L S
Sbjct: 431 ARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEIISISSSMALKDKLIIEL-S 489
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + G++ I+ K+ G +S + +D +M +A
Sbjct: 490 QPTYSINGVGKIVID-KQPDGTRSPNLADSVMINYA 524
>gi|291283815|ref|YP_003500633.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str.
CB9615]
gi|290763688|gb|ADD57649.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str.
CB9615]
Length = 540
Score = 90.2 bits (222), Expect = 8e-16, Method: Composition-based stats.
Identities = 57/395 (14%), Positives = 122/395 (30%), Gaps = 63/395 (15%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R D ++ + + V E+ + IP ++ A++
Sbjct: 252 FHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 311 GIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDN 370
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L V GQ
Sbjct: 371 LEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQA 430
Query: 402 RAVDLEFCRNRRTELHVKMADWL----------------EFASLINHSGLIQNL---KSL 442
++ +F N + + ++ E S+ + L L S
Sbjct: 431 ARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEIISISSSMALKDKLIIALSQ 490
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + G++ I+ K+ G +S + +D +M +A
Sbjct: 491 PTYSINGVGKIVID-KQPDGTRSPNLADSVMINYA 524
>gi|62181180|ref|YP_217597.1| hypothetical protein SC2610 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62128813|gb|AAX66516.1| orf, partial conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|322715669|gb|EFZ07240.1| hypothetical protein SCA50_2790 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 540
Score = 89.8 bits (221), Expect = 9e-16, Method: Composition-based stats.
Identities = 55/396 (13%), Positives = 125/396 (31%), Gaps = 65/396 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R+ D ++ + + V E+ + IP + ++ A++
Sbjct: 252 FHWRSDPRKDDEWYRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSDWVQAAVDAHIRL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 311 GIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDN 370
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L V GQ
Sbjct: 371 LEEFRFDEDGLGAGVRGDARAINELRKAARRPPILATPFRGSGAVFDPDDEAVRGDNGQA 430
Query: 402 RAVDLEFCRNRRTELHVKMADWLE--------------------FASLINHSGLIQNLKS 441
++ +F N + + + +++ + LI L S
Sbjct: 431 ARLNKDFFANAKAQSWWYLRKLFRNTYRAVVEGMAYNPDEIISISSTMESKDKLIIEL-S 489
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + G++ ++ K+ G +S + +D +M ++A
Sbjct: 490 QPTYSINGVGKIVVD-KQPDGTRSPNLADSVMISYA 524
>gi|194445851|ref|YP_002040314.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL254]
gi|194404514|gb|ACF64736.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL254]
Length = 540
Score = 89.8 bits (221), Expect = 9e-16, Method: Composition-based stats.
Identities = 55/396 (13%), Positives = 125/396 (31%), Gaps = 65/396 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R+ D ++ + + V E+ + IP + ++ A++
Sbjct: 252 FHWRSDPRKDDEWYRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSDWVQAAVDAHIRL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 311 GIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDN 370
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L V GQ
Sbjct: 371 LEEFRFDEDGLGAGVRGDARAINELRKAARRPPILATPFRGSGAVFDPDDEAVRGDNGQA 430
Query: 402 RAVDLEFCRNRRTELHVKMADWLE--------------------FASLINHSGLIQNLKS 441
++ +F N + + + +++ + LI L S
Sbjct: 431 ARLNKDFFANAKAQSWWYLRKLFRNTYRAVVEGMAYNPDEIISISSTMESKDKLIIEL-S 489
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + G++ ++ K+ G +S + +D +M ++A
Sbjct: 490 QPTYSINGVGKIVVD-KQPDGTRSPNLADSVMISYA 524
>gi|188494674|ref|ZP_03001944.1| gp33 TerL [Escherichia coli 53638]
gi|188489873|gb|EDU64976.1| gp33 TerL [Escherichia coli 53638]
Length = 539
Score = 89.8 bits (221), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/395 (14%), Positives = 121/395 (30%), Gaps = 64/395 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMNNPFAQ--KRHSGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R+ D + + + E+ + IP ++ A++
Sbjct: 252 FHWRSDPRKDDEW-YHKECEKIDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDAHIRL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYR 368
P + D+A+EG D LR G ++ + +WS +D+ + K+ GL + +
Sbjct: 311 GIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGKGSDIYDSVVKVFGLCDDFG 370
Query: 369 PDAIIIDANNTGART------CDYLEM---------------------LGYHVYRVLGQK 401
D D + GA + L V G+
Sbjct: 371 ADEFRFDEDGLGAGVRGDARAINELREAEGICQITATPFRGSGSVFHPENEAVPGDNGKP 430
Query: 402 RAVDLEFCRNRRTELHVKMADWLE-------------------FASLINHSGLIQNLKSL 442
++ +F N + + + +++ N L+ L S
Sbjct: 431 ARLNKDFFVNAKAQGWWHLRKLFRNTFRALQGMEYDPDEIISISSTMENKDRLLMEL-SQ 489
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ TG++ ++ K+ G KS + +D +M +A
Sbjct: 490 PTWSKNATGKILVD-KQPDGTKSPNLADSVMIAYA 523
>gi|167553969|ref|ZP_02347711.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205321713|gb|EDZ09552.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
Length = 539
Score = 89.4 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/394 (13%), Positives = 116/394 (29%), Gaps = 62/394 (15%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F + W + ++ + + + +
Sbjct: 143 ALFWKVRKFIATLPAEFRGGWDERKHSRFMSVEFPDTGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYFVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMNNPFAQ--KRHSGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R+ D + + + E+ + IP ++ A++
Sbjct: 252 FHWRSDPRKDDEW-YHKECEKIDNPIIVAQELDLNYQASTEGILIPSEWVQAAVDAHIKL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYR 368
P + D+A+EG D LR G ++ + +WS +D+ + K+ GL + +
Sbjct: 311 GIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEWSGKGSDIYDSVVKVFGLCDDFG 370
Query: 369 PDAIIIDANNTGART---------------CDYLEMLGYHVYRV------------LGQK 401
D D + GA D + + G+
Sbjct: 371 ADEFRFDEDGLGAGVRGDARAINELREAEGTDQITATPFRGSGSVFYPENEAVPGDNGKP 430
Query: 402 RAVDLEFCRNRRTELHVKMAD-------WLEFASLINHS-----------GLIQNLKSLK 443
++ +F N + + + L+ + S
Sbjct: 431 SRLNKDFFANAKAQGWWHLRKLFRNTFRALKGMEYDPDEIISISSTMENKDRLLMELSQP 490
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ G++ ++ K+ G KS + +D +M +A
Sbjct: 491 TWSKNAVGKILVD-KQPDGTKSPNLADSVMIAYA 523
>gi|224582844|ref|YP_002636642.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467371|gb|ACN45201.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 540
Score = 89.4 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/396 (13%), Positives = 125/396 (31%), Gaps = 65/396 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R+ D ++ + + V E+ + IP + ++ A++
Sbjct: 252 FHWRSDPRKDDEWYRRECEKI-DNPVVVAQELDLNYSASAEGILIPSDWVQAAVDAHIRL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 311 GIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDN 370
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L V GQ
Sbjct: 371 LEEFRFDEDGLGAGVRGDARAINELRKAARRPPILATPFRGSGAVFDPDDEAVRGDNGQA 430
Query: 402 RAVDLEFCRNRRTELHVKMADWLE--------------------FASLINHSGLIQNLKS 441
++ +F N + + + +++ + LI L S
Sbjct: 431 ARLNKDFFANAKAQSWWYLRKLFRNTYRAVVEGMAYNPDEIISISSTMESKDKLIIEL-S 489
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + G++ ++ K+ G +S + +D +M ++A
Sbjct: 490 QPTYSINGVGKIVVD-KQPDGTRSPNLADSVMISYA 524
>gi|332088044|gb|EGI93169.1| gp33 TerL [Shigella boydii 5216-82]
Length = 539
Score = 89.4 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/395 (14%), Positives = 120/395 (30%), Gaps = 64/395 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYFVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMNNPFAQ--KRHSGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R+ D + + + E+ + IP ++ A++
Sbjct: 252 FHWRSDPRKDDEW-YHKECEKIDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDAHIRL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYR 368
P + D+A+EG D LR G ++ + +WS +D+ + K+ GL + +
Sbjct: 311 GIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGKGSDIYDSVVKVFGLCDDFG 370
Query: 369 PDAIIIDANNTGART------CDYLEM---------------------LGYHVYRVLGQK 401
D D + GA + L V G+
Sbjct: 371 ADEFRFDEDGLGAGVRGDARAINELREAEGICQITATPFRGSGSVFHPENEAVPGDNGKP 430
Query: 402 RAVDLEFCRNRRTELHVKMADWLE-------------------FASLINHSGLIQNLKSL 442
++ +F N + + + +++ N L+ L S
Sbjct: 431 ARLNKDFFVNAKAQGWWHLRKLFRNTFRALQGMEYDPDEIISISSTMENKDRLLMEL-SQ 489
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ TG++ ++ K+ G KS + +D +M +A
Sbjct: 490 PTWSKNATGKILVD-KQPDGTKSPNLADSVMIAYA 523
>gi|323173153|gb|EFZ58784.1| gp33 TerL protein [Escherichia coli LT-68]
Length = 539
Score = 89.4 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/395 (14%), Positives = 120/395 (30%), Gaps = 64/395 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYFVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMNNPFAQ--KRHSGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R+ D + + + E+ + IP ++ A++
Sbjct: 252 FHWRSDPRKDDEW-YHKECEKIDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDAHIRL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYR 368
P + D+A+EG D LR G ++ + +WS +D+ + K+ GL + +
Sbjct: 311 GIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGKGSDIYDSVVKVFGLCDDFG 370
Query: 369 PDAIIIDANNTGART------CDYLEM---------------------LGYHVYRVLGQK 401
D D + GA + L V G+
Sbjct: 371 ADEFRFDEDGLGAGVRGDARAINELREAEGICQITATPFRGSGSVFHPENEAVPGDNGKP 430
Query: 402 RAVDLEFCRNRRTELHVKMADWLE-------------------FASLINHSGLIQNLKSL 442
++ +F N + + + +++ N L+ L S
Sbjct: 431 ARLNKDFFVNAKAQGWWHLRKLFRNTFRALQGMEYDPDEIISISSTMENKDRLLMEL-SQ 489
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ TG++ ++ K+ G KS + +D +M +A
Sbjct: 490 PTWSKNATGKILVD-KQPDGTKSPNLADSVMIAYA 523
>gi|332759085|gb|EGJ89395.1| gp33 TerL [Shigella flexneri 4343-70]
Length = 519
Score = 89.0 bits (219), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/396 (14%), Positives = 121/396 (30%), Gaps = 65/396 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 122 ALFWKARKFVETLPVEFRGSWDEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 176
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DE++ + I L++ R I S+ ++ F + + F
Sbjct: 177 TLYLVDESAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 230
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R D ++ + + V E+ + IP ++ A++
Sbjct: 231 FHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKL 289
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 290 GIQPTGKRLGAMDVADEGRDKNSFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDN 349
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L V GQ
Sbjct: 350 LEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQA 409
Query: 402 RAVDLEFCRNRRTELHVKMADWL--------EFASLINH------------SGLIQNLKS 441
++ +F N + + ++ E LI L S
Sbjct: 410 ARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMDYNPDEIISISSSMALKDKLIIEL-S 468
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + G++ I+ K+ G +S + +D +M ++A
Sbjct: 469 QPTYSINGVGKIVID-KQPDGTRSPNLADSVMISYA 503
>gi|191172603|ref|ZP_03034142.1| gp33 TerL [Escherichia coli F11]
gi|190907076|gb|EDV66676.1| gp33 TerL [Escherichia coli F11]
gi|324014340|gb|EGB83559.1| hypothetical protein HMPREF9533_01599 [Escherichia coli MS 60-1]
Length = 540
Score = 89.0 bits (219), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/396 (14%), Positives = 120/396 (30%), Gaps = 65/396 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R D ++ + + V E+ + IP ++ A++
Sbjct: 252 FHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + + G E+
Sbjct: 311 GIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVENVFGFCEQDN 370
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L V GQ
Sbjct: 371 LEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQA 430
Query: 402 RAVDLEFCRNRRTELHVKMADWL--------EFASLINH------------SGLIQNLKS 441
++ +F N + + ++ E + LI L S
Sbjct: 431 ARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEIISISSSMALKDKLIIEL-S 489
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + G++ I+ K+ G +S + +D +M +A
Sbjct: 490 QPTYSINGVGKIVID-KQPDGTRSPNLADSVMINYA 524
>gi|333006277|gb|EGK25786.1| gp33 TerL [Shigella flexneri K-218]
Length = 540
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/395 (14%), Positives = 123/395 (31%), Gaps = 63/395 (15%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWDEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DE++ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDESAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R D ++ + + V E+ + IP ++ A++
Sbjct: 252 FHWRDDPRKDEEWYRRECEKI-DNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 311 GIQPTGKRLGAMDVADEGRDKNSFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDN 370
Query: 369 PDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQK 401
+ D + GA + L V GQ
Sbjct: 371 LEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQA 430
Query: 402 RAVDLEFCRNRRTELHVKMADWL----------------EFASLINHSGLIQNL---KSL 442
++ +F N + + ++ E S+ + L L S
Sbjct: 431 ARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMDYNPDEIISISSSMALKDKLIIELSQ 490
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ + G++ I+ K+ G +S + +D +M ++A
Sbjct: 491 PTYSINGVGKIVID-KQPDGTRSPNLADSVMISYA 524
>gi|320179507|gb|EFW54461.1| Phage terminase, large subunit [Shigella boydii ATCC 9905]
Length = 539
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/395 (14%), Positives = 120/395 (30%), Gaps = 64/395 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYFVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMNNPFAQ--KRHSGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R+ D + + + E+ + IP ++ A++
Sbjct: 252 FHWRSDPRKDDEW-YHKECDKIDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDAHIRL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYR 368
P + D+A+EG D LR G ++ + +WS +D+ + K+ GL + +
Sbjct: 311 GIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGKGSDIYDSVVKVFGLCDDFG 370
Query: 369 PDAIIIDANNTGART------CDYLEM---------------------LGYHVYRVLGQK 401
D D + GA + L V G+
Sbjct: 371 ADEFRFDEDGLGAGVRGDARAINELREAEGICQITATPFRGSGSVFHPENEAVPGDNGKP 430
Query: 402 RAVDLEFCRNRRTELHVKMADWLE-------------------FASLINHSGLIQNLKSL 442
++ +F N + + + +++ N L+ L S
Sbjct: 431 ARLNKDFFVNAKAQGWWHLRKLFRNTFRALQGMEYDPDEIISISSTMENKDRLLMEL-SQ 489
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ TG++ ++ K+ G KS + +D +M +A
Sbjct: 490 PTWSKNATGKILVD-KQPDGTKSPNLADSVMIAYA 523
>gi|224583103|ref|YP_002636901.1| terminase large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467630|gb|ACN45460.1| terminase large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 492
Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/384 (14%), Positives = 108/384 (28%), Gaps = 79/384 (20%)
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL------TERN---ANRFWIMTSNP 230
+ G+ N + +EA ++ + E + W+ NP
Sbjct: 104 NVENIKGYANFDAALV--EEAENVSKDSWETLIPTVRKEFYSAEYGRVVESEIWVA-YNP 160
Query: 231 RRLSGKFYEIF--NKPLDDW--------KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+ ++ F N+ D+ QI+ + + + ++
Sbjct: 161 KNRLSDTHQRFVTNRIYPDYDENGNRYCIVKQINYTANPWFPETLRRDMEIMKKANHELY 220
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRR 338
R G+ + I +E A + +I D ++ G D +R
Sbjct: 221 RHVYLGEPVGASEMAIIKFAWLEAATDAHIKLGWKAKGAVIAAHDPSDTGPDAKGYAVRH 280
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHV 394
G V++ + + D+ + S L D + D + GA DY V
Sbjct: 281 GSVVKRVCEGLLMDINEGADWASSLAVIDDVDHFLFDGDGLGAGLRRQITDYFSGKKVTV 340
Query: 395 YRVLGQKRAVDLEF-----------------------CRNRRTELHVKMADWL------- 424
G + D + RN+R + + +AD L
Sbjct: 341 TMFKGSESPFDEDAPYQAGAWTDEVVQGDNVRTIGDVFRNKRAQFYYTLADRLYRTYRAV 400
Query: 425 EFASLINHSG----------------LIQNLKSLKSFIVPNTGEL----AIESKRVKGAK 464
E + L L ++ G+L +E K+ G
Sbjct: 401 EHGEYADPDEMLSFDKEAIGENILNKLFAELTQIQR-KFNGNGKLELMTKVEMKQKLGIP 459
Query: 465 STDYSDGLMYTFAENPPRSDMDFG 488
S + +D LM + D+
Sbjct: 460 SPNLADALMMCMHCPESVAQPDYS 483
>gi|110804738|ref|YP_688258.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
gi|110614286|gb|ABF02953.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
Length = 255
Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 72/238 (30%), Gaps = 49/238 (20%)
Query: 295 SFIPLNIIEEALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SK 350
+ I L+ IE A++ + +P +G D+A+ G D V R G V+ +W +
Sbjct: 10 AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 69
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG------------YHVYRVL 398
+L + + + D I+ D+ GA + + R
Sbjct: 70 DELLKSCQRTYQAALEREAD-IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFN 128
Query: 399 GQ----------KRAVDLEFCRNRRTELHVKMAD-------WLEFASLINHSGLIQ---- 437
+ +F N + + +AD + LI
Sbjct: 129 AGAGVHEPDDEYNGIPNKDFFANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSR 188
Query: 438 --------NLKSLKSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
+ G + +ESK+ + S + +D + FA D
Sbjct: 189 CPLLEKLKLELTTPHRDFDRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 246
>gi|167993618|ref|ZP_02574712.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
str. CVM23701]
gi|205328294|gb|EDZ15058.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
str. CVM23701]
Length = 539
Score = 87.9 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 56/404 (13%), Positives = 127/404 (31%), Gaps = 67/404 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWNEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
R+ D ++ + +D+ V E+ + IP + ++ A++
Sbjct: 252 FHWRSDPRKDDEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSDWVQAAVDAHIR 309
Query: 312 --PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKY 367
P + D+A+EG D R G ++E++ +WS +D+ + ++ G E+
Sbjct: 310 LGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVERVFGFCEQD 369
Query: 368 RPDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQ 400
+ D + GA + L V GQ
Sbjct: 370 NLEEFRFDEDGLGAGVRGDARAINELRKAARRPPILATPFRGSGAVFDPDDEAVRGDNGQ 429
Query: 401 KRAVDLEFCRNRRTELHVKMADWLE--------------------FASLINHSGLIQNLK 440
++ +F N + + + +++ + LI L
Sbjct: 430 AARLNKDFFANAKAQSWWYLRKLFRNTYRAVVEGMAYNPDEIISISSTMESKDKLIIEL- 488
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
S ++ + G++ ++ K+ G +S + +D M ++A D
Sbjct: 489 SQPTYSINGVGKIVVD-KQPDGTRSPNLADSAMISYAPMDSSLD 531
>gi|294650848|ref|ZP_06728195.1| bacteriophage terminase large subunit TerL [Acinetobacter
haemolyticus ATCC 19194]
gi|292823266|gb|EFF82122.1| bacteriophage terminase large subunit TerL [Acinetobacter
haemolyticus ATCC 19194]
Length = 552
Score = 87.9 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 54/337 (16%), Positives = 106/337 (31%), Gaps = 61/337 (18%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + +++ I S P + +F++ ++ + F +
Sbjct: 210 MYFLDEWAFVERQ--EAVDAAISQ--NTNVHIKGSTPNGIGDRFHQ--DRFSGRYAVFSM 263
Query: 254 DTRTVEGIDP--SFHEGIIARYGL------DSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
R + ++ I + D V EV + IP ++ A
Sbjct: 264 PWRANPDKNWTVEYNGKQIHPWYEKQLATLDDVVLAQEVDINYAASVEGVLIPSTWVQLA 323
Query: 306 LNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKIS 361
++ +P I G D+A+EG D R G V+ +L WS D+ T K
Sbjct: 324 IDAHIKLGIEPTGDRIAGLDVADEGKDKNSFASRHGIVMTYLDTWSGKGDDIFGTTQKAM 383
Query: 362 GLVEKYRPDAIIIDANNTGAR------TCDYL-EMLGYHVYRVLGQKRA----------- 403
L D + DA+ GA + L G V + +
Sbjct: 384 DLSIDQSIDTLFYDADGLGAGCRGDARVVNELRREQGLSEVDVQPFRGSGAVHEPDEQMV 443
Query: 404 ---VDLEFCRNRRTELHVKMADWLEF-------------------ASLINHSGL--IQNL 439
+ +F N + + + + + I+ L +
Sbjct: 444 EMRFNKDFFANLKAQSWWSLRLRFQETFRALEGREYDRDMIISFSSEHIDPKELAMLTTE 503
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
S ++ G++ + +K+ G S + +D +M F
Sbjct: 504 LSQPTYTKNGVGKILV-NKQPDGTASPNRADSVMICF 539
>gi|322835667|ref|YP_004215693.1| terminase large subunit [Rahnella sp. Y9602]
gi|321170868|gb|ADW76566.1| terminase large subunit [Rahnella sp. Y9602]
Length = 539
Score = 87.5 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 63/404 (15%), Positives = 120/404 (29%), Gaps = 67/404 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + + ++ + + + +
Sbjct: 143 ALFWKARKFVEMLPVEFRGGWSAKKHAPYMRVEFPTTGAVLKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYFVDEAAFLQRPLL--IEASLSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGRIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
R+ D +++ A+ +D+ V E+ + IP I A+N
Sbjct: 252 FHWRSDPRKDEAWYAKECAK--IDNPVVVAQELDLNYSASAEGVLIPNEWIRAAINAHIK 309
Query: 312 --PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKY 367
P + D+A+EG D R G ++ + +WS +D+ ++ K GL +K+
Sbjct: 310 LGIQPTGKRLGAMDVADEGRDKNAFSARYGFLLTEVEEWSGVGSDIYKSSEKAFGLCDKH 369
Query: 368 RPDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRAVDLE---------- 407
+ D + GA + G D E
Sbjct: 370 GLEEFRFDEDGLGAGVRGDARAINEIRKAEGARYILATPFRGSASVFDPEAEAVPGDNGQ 429
Query: 408 -------FCRNRRTELHVKMADWLE--------------------FASLINHSGLIQNLK 440
F N + + + + N LI L
Sbjct: 430 PARINKDFFANAKAQSWWHLRKLFRNVYRAVEEKMDYNPDEIISISGDIKNLDKLIIEL- 488
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
S ++ + G++ I K+ G KS + SD +M +A D
Sbjct: 489 SQPTYSINGVGKI-IVDKQPDGTKSPNLSDSVMINYAPMDTTMD 531
>gi|238790716|ref|ZP_04634478.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641]
gi|238721211|gb|EEQ12889.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641]
Length = 538
Score = 87.5 bits (215), Expect = 5e-15, Method: Composition-based stats.
Identities = 58/356 (16%), Positives = 107/356 (30%), Gaps = 63/356 (17%)
Query: 172 MCRTYSEERPDTFVGH-HNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSN 229
T S + G I DE++ + L T + S
Sbjct: 176 FPETESAMTGEAGDGIGRGDRTSFYIVDESAFLERPYLVDASLSATTNCRQD-----VST 230
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
P ++ F E + K F R D ++++ + LD E+ +
Sbjct: 231 PNGMANSFAE--RRHSGKIKVFTFHWRDDPRKDDAWYQKQVEN--LDPVTVAQEIDINYS 286
Query: 290 QQDIDSFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
IP ++ A+N P + DIA+EG D R G ++E + +
Sbjct: 287 ASVEGVLIPSAWVQAAINAHEVLGIVPTGQRLGALDIADEGKDTNSFAGRHGFLLESIEE 346
Query: 348 WSKT--DLRTTNNKISGLVEKYRPDAIIIDANNTGAR------TC--DYLEMLGYHVYRV 397
WS D+ T K + + + D + GA E H+
Sbjct: 347 WSGKGDDIFGTVQKAFDICDAQNLETFRFDTDGLGAGARGDARVINEQREEQRRRHIVAT 406
Query: 398 -------------------LGQKRAVDLEFCRNRRTELHVKMADWL-------------- 424
GQ+ ++ +F N + + +
Sbjct: 407 PFRGSGGVTDPDDEAVPGDNGQQGRLNKDFFANAKAQGWWSLRTRFQKTYRAVKENMEFD 466
Query: 425 --EFASLINHSGLIQNLK---SLKSFIVPNTGELAIESKRVKGAKSTDYSD-GLMY 474
E S+ + L S ++ V G++ ++ K G KS + +D ++
Sbjct: 467 PDEIISIPKDLKNLTKLTSELSQPTYSVNGVGKIVVDKKPD-GTKSPNLADSAMIL 521
>gi|227113418|ref|ZP_03827074.1| Terminase large subunit [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 472
Score = 87.5 bits (215), Expect = 5e-15, Method: Composition-based stats.
Identities = 49/337 (14%), Positives = 94/337 (27%), Gaps = 61/337 (18%)
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQID 254
+EA ++ + + + W+ NP+ + Y+ F P DD ++
Sbjct: 116 WVEEAEAVTKESWDILIPTIRKPGSE-IWVSF-NPKNILDDTYQRFVVTPPDDICLLTVN 173
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--P 312
+ + + R G+ + I +E A +
Sbjct: 174 YTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASEMAIIKREWLEAATDAHIKLGW 233
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDA 371
++ D ++ G D+ +R G V++ + D+ + + L D
Sbjct: 234 KAKGAIVAAHDPSDTGPDDKGYAMRHGSVVKRIASPPAPLDVNDGADWATDLAIADGADH 293
Query: 372 IIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF------------------- 408
+ D + GA D V G + D +
Sbjct: 294 FLFDGDGLGAGLRRQVTDSFTGKKVTVTMFKGSESPFDEDSPYQAGAWFDEVVDGDNIRT 353
Query: 409 ----CRNRRTELHVKMADWL-----------------------EFASLINHSGLIQNLKS 441
RN+R + + +AD L E L L
Sbjct: 354 IGDVFRNKRAQFYYTLADRLYLTYRAIVHGEYANPDDMLSFDKEAIGDQMLEKLFAELTQ 413
Query: 442 LKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMY 474
++ G+L +E K G S + +D LM
Sbjct: 414 IQR-KFNGNGKLELMTKVEMKSKLGIPSPNLADSLMM 449
>gi|260906962|ref|ZP_05915284.1| hypothetical protein BlinB_16637 [Brevibacterium linens BL2]
Length = 249
Score = 86.7 bits (213), Expect = 8e-15, Method: Composition-based stats.
Identities = 45/258 (17%), Positives = 79/258 (30%), Gaps = 40/258 (15%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
P WQ + + + + R +GKTT A+ L PG
Sbjct: 23 DPELWQERLLRT--------------QEARVLVLCARQVGKTTATAYKALHAAMFNPGRD 68
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V+ ++ S+ Q L + + + P S+ L S+
Sbjct: 69 VLIVSPSQRQSDEML------------RRVASLYRGMKEAPKLSRSNTSEMGLSNGSR-- 114
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ SE F G +I DEAS D + +L + + S
Sbjct: 115 -VVSLPGSEGGIRGFAGVK-----LLILDEASRVDDDVFASVLPMVASDGQ---MVALST 165
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
P G F+E+ + + W+R ++ + P + A G S V + +F
Sbjct: 166 PWGRRGWFHELHQETRNGWERHKVTVYESDQYTPPRIAEVKASLG--SFVFSSDYLCEF- 222
Query: 290 QQDIDSFIPLNIIEEALN 307
+ A +
Sbjct: 223 GDTDSQLFSTENVRAAFS 240
>gi|315426011|dbj|BAJ47659.1| prophage MuMc02, terminase, ATPase subunit [Candidatus
Caldiarchaeum subterraneum]
Length = 439
Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats.
Identities = 63/333 (18%), Positives = 112/333 (33%), Gaps = 25/333 (7%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ- 119
+ H +P F+ + RG G T A T P +++ ++ S Q
Sbjct: 18 DIRLHPWQKRFIDDPSRFRIILKH-RGAGATFTIAAEACAEALTHPASTILLISYSLRQS 76
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
L+ ++ V LS L NK S+ A + + G
Sbjct: 77 LE--IFRHVRTILSRLENKRLKHGHSIYRLAAKIGARTVELGNGSRI--------ISLPN 126
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
P++ G+ A+ DEA+ NL T N + S P+ G F+E
Sbjct: 127 NPESLRGYRAD---AVYVDEAAFFRGDTNLKTAIMFTTVARNGRVTLVSTPKGKRGWFHE 183
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+ W + + I E + R + R E+ +F ++++FIP
Sbjct: 184 AWTTDNT-WSKHLVKLGDSPHITMHDLEEL--RKTMSPLEWRQEMMCEFLD-EVNAFIPY 239
Query: 300 NIIEEALNRE-PCPDPYAPLIMGCDIAEEGGDNTVV--VLRRGPVIE--HLFDWSKTDLR 354
I E + P + +G D D+TV+ V+ G ++ + +
Sbjct: 240 EKILECVEDYVPARVVGGRVYVGVDFGRF-RDSTVIIAVVEDGERFRVCYVEELRQKPFA 298
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
I+ P + +D+ GA + L
Sbjct: 299 AQLEAINRANMVLHPAIVAVDSTGMGAPLAETL 331
>gi|297520464|ref|ZP_06938850.1| hypothetical protein EcolOP_22727 [Escherichia coli OP50]
Length = 313
Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/270 (17%), Positives = 90/270 (33%), Gaps = 56/270 (20%)
Query: 262 DPSFHEGIIARYGLDSD---VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYA 316
DP E R D V E+ + IP ++ A++ P
Sbjct: 30 DPRKDEEWYRRECEKIDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKLGIQPTG 89
Query: 317 PLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYRPDAIII 374
+ D+A+EG D R G ++E++ +WS +D+ + K+ G E+ +
Sbjct: 90 KRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDNLEEFRF 149
Query: 375 DANNTGART------CDYLEMLGYH---------------------VYRVLGQKRAVDLE 407
D + GA + L + V GQ ++ +
Sbjct: 150 DEDGLGAGVRGDARAINELRNVARRPSILATPFRGSGAVFDPDDEAVRGDNGQAARLNKD 209
Query: 408 FCRNRRTELHVKMADWL--------EFASLINH------------SGLIQNLKSLKSFIV 447
F N + + ++ E + LI L S ++ +
Sbjct: 210 FFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEIISISSSMALKDKLIIEL-SQPTYSI 268
Query: 448 PNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
G++ I+ K+ G +S + +D +M +A
Sbjct: 269 NGVGKIVID-KQPDGTRSPNLADSVMINYA 297
>gi|327191373|gb|EGE58399.1| prophage MuMc02, terminase, ATPase subunit, putative [Rhizobium
etli CNPAF512]
Length = 248
Score = 86.3 bits (212), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/262 (17%), Positives = 86/262 (32%), Gaps = 38/262 (14%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
P WQ + NP + + + GK+T+ A+LV+ P
Sbjct: 22 EPDPWQANLLRA----------NPRRSMLLCSRQS----GKSTVAAFLVIQTALFVPAAQ 67
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
++ ++ ++ Q L+ + +LS LP +S S
Sbjct: 68 IVVVSPTQRQ-SNELFRTIVGFLSRLPGAPRPTAESKQGTEL--------------SNGA 112
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ +E+ G ++ DEA+ D + + + + + + +
Sbjct: 113 RVLSLPGTEKTIRGIAGVD-----LVVMDEAARVEDALLTAVRPMMATK-PDARLVALTT 166
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
P G FYE + W+R ++ I F + + G E +F
Sbjct: 167 PAGKRGWFYEAWVSDDPSWERVRVPASACPRITQQFLDEELKALGA--IKFSEEYGLEFH 224
Query: 290 QQDIDSFIPLNIIEEALNREPC 311
+ + PL IIE A +E
Sbjct: 225 DPEE-AVFPLAIIEAAFTQEVR 245
>gi|315576663|gb|EFU88854.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
Length = 519
Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats.
Identities = 67/430 (15%), Positives = 137/430 (31%), Gaps = 62/430 (14%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS----LLPNKHWFEMQ 144
GK+ L++ + +WL +A + + V+ L + K +
Sbjct: 92 GKSWLSSRIAVWLA---DHNRRCYVAGGKKDTTDIIMQHVTDTLQTVDESIARKLLEPVD 148
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
L + S G + S + + +G Y I DE++
Sbjct: 149 KLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGDY----IIDESAFVS 204
Query: 205 DVIN--LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL--DDWKRFQIDTRTVEG 260
+ LG F N SNP G+FY+ + D RT
Sbjct: 205 NETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQENIPKGMLVVWADVRTAFE 263
Query: 261 IDP-SFHEGIIARYGLDSDVTRVE------VCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
D E +I S+ + + + P ++ D EE +
Sbjct: 264 EDRVKSIEQVI-----SSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTEE-----EHTE 313
Query: 314 PYAPLIMGCDIAEEGGDN-----TVVVLRRGPVIEHLFDWSK---TDLRTTNNKISGL-- 363
+G D A +G D + + + + + K D T+ I+ L
Sbjct: 314 KNWEYFLGVDSAYKGKDKIKATLSALDAQGQVHVIDTIEIEKGDWQDGVTSKKIITQLLM 373
Query: 364 -VEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAV---------DLEFCRN 411
+E + + +D G + L + + ++ + ++ N
Sbjct: 374 IIEHFEVKGVCVDV-GYGVYIVEGLAHINGDFELHGINFGAGTTKERVEKKHYSAKYGAN 432
Query: 412 RRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSFIVPNTGELAIESK---RVKGAKS 465
+R E+H+ + + ++ ++ + + + L S + + G+ AI K + K S
Sbjct: 433 KRAEMHIDLQENIDNRNIFFTEKVYEEVIDELVLVSSKIKSNGKTAIVPKEEIKAKLGHS 492
Query: 466 TDYSDGLMYT 475
D D ++ +
Sbjct: 493 PDTLDSVLLS 502
>gi|255975409|ref|ZP_05425995.1| predicted protein [Enterococcus faecalis T2]
gi|255968281|gb|EET98903.1| predicted protein [Enterococcus faecalis T2]
Length = 519
Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats.
Identities = 67/430 (15%), Positives = 137/430 (31%), Gaps = 62/430 (14%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS----LLPNKHWFEMQ 144
GK+ L++ + +WL +A + + V+ L + K +
Sbjct: 92 GKSWLSSRIAVWLA---DHNRRCYVAGGKKDTTDIIMQHVTDTLQTVDESIARKLLEPVD 148
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
L + S G + S + + +G Y I DE++
Sbjct: 149 KLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGDY----IIDESAFVS 204
Query: 205 DVIN--LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL--DDWKRFQIDTRTVEG 260
+ LG F N SNP G+FY+ + D RT
Sbjct: 205 NETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQENIPKGMLVVWADVRTAFE 263
Query: 261 IDP-SFHEGIIARYGLDSDVTRVE------VCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
D E +I S+ + + + P ++ D EE +
Sbjct: 264 EDRVKSIEQVI-----SSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTEE-----EHTE 313
Query: 314 PYAPLIMGCDIAEEGGDN-----TVVVLRRGPVIEHLFDWSK---TDLRTTNNKISGL-- 363
+G D A +G D + + + + + K D T+ I+ L
Sbjct: 314 KNWEYFLGVDSAYKGKDKIKATLSALDAQGQVHVIDTIEIEKGNWQDGVTSKKIITQLLM 373
Query: 364 -VEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAV---------DLEFCRN 411
+E + + +D G + L + + ++ + ++ N
Sbjct: 374 IIEHFEVKGVCVDV-GYGVYIVEGLAHINGDFELHGINFGAGTTKERVEKNHYSAKYGAN 432
Query: 412 RRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSFIVPNTGELAIESK---RVKGAKS 465
+R E+H+ + + ++ ++ + + + L S + + G+ AI K + K S
Sbjct: 433 KRAEMHIDLQENIDNRNIFFTEKVYEEVIDELVLVSSKIKSNGKTAIVPKEEIKAKLGHS 492
Query: 466 TDYSDGLMYT 475
D D ++ +
Sbjct: 493 PDTLDSVLLS 502
>gi|29376621|ref|NP_815775.1| hypothetical protein EF2112 [Enterococcus faecalis V583]
gi|257090386|ref|ZP_05584747.1| predicted protein [Enterococcus faecalis CH188]
gi|307276045|ref|ZP_07557178.1| hypothetical protein HMPREF9521_01673 [Enterococcus faecalis
TX2134]
gi|29344085|gb|AAO81845.1| hypothetical protein EF_2112 [Enterococcus faecalis V583]
gi|256999198|gb|EEU85718.1| predicted protein [Enterococcus faecalis CH188]
gi|306507375|gb|EFM76512.1| hypothetical protein HMPREF9521_01673 [Enterococcus faecalis
TX2134]
Length = 519
Score = 85.9 bits (211), Expect = 2e-14, Method: Composition-based stats.
Identities = 67/430 (15%), Positives = 137/430 (31%), Gaps = 62/430 (14%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS----LLPNKHWFEMQ 144
GK+ L++ + +WL +A + + V+ L + K +
Sbjct: 92 GKSWLSSRIAVWLA---DHNRRCYVAGGKKDTTDIIMQHVTDTLQTVDESIARKLLEPVD 148
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
L + S G + S + + +G Y I DE++
Sbjct: 149 KLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGDY----IIDESAFVS 204
Query: 205 DVIN--LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL--DDWKRFQIDTRTVEG 260
+ LG F N SNP G+FY+ + D RT
Sbjct: 205 NETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQENIPKGMLVVWADVRTAFE 263
Query: 261 IDP-SFHEGIIARYGLDSDVTRVE------VCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
D E +I S+ + + + P ++ D EE +
Sbjct: 264 EDRVKSIEQVI-----SSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTEE-----EHTE 313
Query: 314 PYAPLIMGCDIAEEGGDN-----TVVVLRRGPVIEHLFDWSK---TDLRTTNNKISGL-- 363
+G D A +G D + + + + + K D T+ I+ L
Sbjct: 314 KNWEYFLGVDSAYKGKDKIKATLSALDAQGQVHVIDTIEIEKGDWQDGVTSKKIITQLLM 373
Query: 364 -VEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAV---------DLEFCRN 411
+E + + +D G + L + + ++ + ++ N
Sbjct: 374 IIEHFEVKGVCVDV-GYGVYIVEGLAHINGDFELHGINFGAGTTKERVEKNHYSAKYGAN 432
Query: 412 RRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSFIVPNTGELAIESK---RVKGAKS 465
+R E+H+ + + ++ ++ + + + L S + + G+ AI K + K S
Sbjct: 433 KRAEMHIDLQENIDNRNIFFTEKVYEEVIDELVLVSSKIKSNGKTAIVPKEEIKAKLGHS 492
Query: 466 TDYSDGLMYT 475
D D ++ +
Sbjct: 493 PDTLDSVLLS 502
>gi|315575102|gb|EFU87293.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
gi|315582529|gb|EFU94720.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
Length = 407
Score = 85.5 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/320 (16%), Positives = 106/320 (33%), Gaps = 51/320 (15%)
Query: 195 IINDEASGTPDVIN--LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL--DDWKR 250
I DE++ + LG F N SNP G+FY+ +
Sbjct: 83 YIIDESAFVSNETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQENIPKGMLV 141
Query: 251 FQIDTRTVEGIDP-SFHEGIIARYGLDSDVTRVE------VCGQFPQQDIDSFIPLNIIE 303
D RT D E +I S+ + + + P ++ D E
Sbjct: 142 VWADVRTAFEEDRVKSIEQVI-----SSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE 196
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDN-----TVVVLRRGPVIEHLFDWSK---TDLRT 355
E + +G D A +G D + + + + + K D T
Sbjct: 197 E-----EHTEKNWEYFLGVDSAYKGKDKIKATLSALDAQGQVHVIDTIEIEKGDWQDGVT 251
Query: 356 TNNKISGL---VEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAV------ 404
+ I+ L +E + + +D G + L + + ++ +
Sbjct: 252 SKKIITQLLMIIEHFEVKGVCVDV-GYGVYIVEGLAHINGDFELHGINFGAGTTKERVEK 310
Query: 405 ---DLEFCRNRRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSFIVPNTGELAIESK 458
++ N+R E+H+ + + ++ ++ + + + L S + + G+ AI K
Sbjct: 311 NHYSAKYGANKRAEMHIDLQENIDNRNIFFTEKVYEEVIDELVLVSSKIKSNGKTAIVPK 370
Query: 459 ---RVKGAKSTDYSDGLMYT 475
+ K S D D ++ +
Sbjct: 371 EEIKAKLGHSPDTLDSVLLS 390
>gi|315034678|gb|EFT46610.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
Length = 519
Score = 85.2 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 68/431 (15%), Positives = 138/431 (32%), Gaps = 64/431 (14%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS----LLPNKHWFEMQ 144
GK+ L++ + +WL +A + + V+ L + K +
Sbjct: 92 GKSWLSSRIAVWLA---DHNRRCYVAGGKKDTTDIIMQHVTDTLQTVDESIARKLLEPVD 148
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
L + S G + S + + +G Y I DE++
Sbjct: 149 KLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGDY----IIDESAFVS 204
Query: 205 DVIN--LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL--DDWKRFQIDTRTVEG 260
+ LG F N SNP G+FY+ + D RT
Sbjct: 205 NETYAELGRRNFANVDGKNYLSFEISNP-HNKGRFYDKLTQENIPKGMLVVWADVRTAFE 263
Query: 261 IDP-SFHEGIIARYGLDSDVTRVE------VCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
D E +I S+ + + + P ++ D EE +
Sbjct: 264 EDRVKSIEQVI-----SSEFFQNKSTCQRYFLCELPDENEDGMFGTPQTEE-----EHTE 313
Query: 314 PYAPLIMGCDIAEEGGDN-----TVVVLRRGPVIEHLFDWSK---TDLRTTNNKISGL-- 363
+G D A +G D + + + + + K D T+ I+ L
Sbjct: 314 KDWEYFLGVDSAYKGKDKIKATLSALDAQGQVHVIDTIEIEKGDWQDGVTSKKIITQLLM 373
Query: 364 -VEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAV---------DLEFCRN 411
+E + + +D G + L + + ++ + ++ N
Sbjct: 374 IIEHFDVKGVCVDV-GYGVYIVEGLAHINGDFELHGINFGAGTTKERVEKNHYSAKYGAN 432
Query: 412 RRTELHVKMADWLEFASLI----NHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
+R E+H+ + + ++ ++ + +I L + S + + G+ AI K + K
Sbjct: 433 KRAEMHIDLQENIDNRNIFFTEKVYEEVIDELVLISS-KIKSNGKTAIVPKEEIKAKLGH 491
Query: 465 STDYSDGLMYT 475
S D D ++ +
Sbjct: 492 SPDTLDSVLLS 502
>gi|53793591|ref|YP_112491.1| terminase large subunit [Flavobacterium phage 11b]
gi|53748181|emb|CAH56642.1| terminase large subunit [Flavobacterium phage 11b]
Length = 432
Score = 83.2 bits (204), Expect = 9e-14, Method: Composition-based stats.
Identities = 52/314 (16%), Positives = 114/314 (36%), Gaps = 38/314 (12%)
Query: 196 INDEASGTPDVINLGILG----FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD----- 246
DE + + L + + T NP + + + + K +
Sbjct: 126 FIDECNQITYKAWQIVKSRIRYKLNQYGIEPKMLGTCNPAKNW-VYAQFYLKDKNGTLDN 184
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS-FIPLNIIEEA 305
D K Q + S+ +++ LD + + G + + + I I+
Sbjct: 185 DKKFIQALPTDNPHLPASYLTSLLS---LDENSKQRLYYGNWEYDNDPAKLIDYEKIQNC 241
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
P + + + DIA G D V+ + G + +F +K+ + + GL
Sbjct: 242 FTNTFIP--FGEMYISADIARFGSDKMVICVWSGFRVVEIFSMAKSSITEIAEAVRGLSI 299
Query: 366 KYRP--DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLE----FCRNRRTELHVK 419
K++ +I D + + + RA++++ +N +T+ + K
Sbjct: 300 KHKVPLSNVICDED-----GVGGGVVDVLGCTGFINNSRAMEVDNQVVQYQNLKTQCYYK 354
Query: 420 MAD-------WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYS 469
+A+ ++ + + + L+ +K + + G+L + SK + +S DYS
Sbjct: 355 LAEVIQSNNLYIHSEDATVNDEITKELEQVKRDKIDSDGKLQLISKDKVKQAIGRSPDYS 414
Query: 470 DGLMY-TFAENPPR 482
D LM + E P+
Sbjct: 415 DALMMRMYFEFKPK 428
>gi|312126991|ref|YP_003991865.1| hypothetical protein Calhy_0759 [Caldicellulosiruptor
hydrothermalis 108]
gi|311777010|gb|ADQ06496.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
108]
Length = 444
Score = 80.5 bits (197), Expect = 6e-13, Method: Composition-based stats.
Identities = 57/335 (17%), Positives = 108/335 (32%), Gaps = 39/335 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AGR GK+T+ V+ +T+ A S Q K + E + N +
Sbjct: 54 AGRRFGKSTVTLIDVVHECATKTKQVWYITAPSIDQAK-IYFQEFEQ---RAANNSLLDA 109
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+P+ L I + + G + EA+
Sbjct: 110 LVKDFKWSPFPEITLINGSKILGRS--------TSRNGVYLRGKGADG---VAITEAAFI 158
Query: 204 PDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTRTV 258
D + I + +RN T N Y++F + L+D +K F
Sbjct: 159 KDKVYHDVIRAMVLDRNGVLRLETTPN---GMNYVYKLFQEGLNDSTGYYKSFHATVYDN 215
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI----PLNIIEEALNREPCPDP 314
E +D E I + R+E +F + DSFI L + + + P
Sbjct: 216 ERLDREELERIRRE--IPELAWRIEYLAEFVE--DDSFIFPWNLLCEVFDDYELKKEPQN 271
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR---TTNNKISGLVEKYRPDA 371
+G D+A+ ++VL + ++ + R ++ L KY
Sbjct: 272 GHRYSIGVDLAKYQDYTVIIVLDITREPYQIVEYHRYQGRLYTDVVAHVNELQAKY-NAR 330
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ +DA G + + + + +++ +
Sbjct: 331 VYLDATGVGDPIAEQVR----NCEPFVFSEKSRNK 361
>gi|333010190|gb|EGK29625.1| phage terminase large subunit domain protein [Shigella flexneri
K-272]
gi|333021147|gb|EGK40404.1| phage terminase large subunit domain protein [Shigella flexneri
K-227]
Length = 235
Score = 80.5 bits (197), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 47/223 (21%)
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVE 365
+ +P +G D+A+ G D V R G V+ +W + +L + +
Sbjct: 5 KTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAAL 64
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLG------------YHVYRVLGQ----------KRA 403
+ D I+ D+ GA + + R
Sbjct: 65 EREAD-IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGI 123
Query: 404 VDLEFCRNRRTELHVKMAD-------WLEFASLINHSGLIQ------------NLKSLKS 444
+ +F N + + +AD + LI +
Sbjct: 124 PNKDFFANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPH 183
Query: 445 FIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 184 RDFDRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 226
>gi|48697520|ref|YP_024878.1| gp33 TerL [Burkholderia phage BcepB1A]
gi|47717490|gb|AAT37736.1| gp33 TerL [Burkholderia phage BcepB1A]
Length = 532
Score = 79.4 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/338 (15%), Positives = 105/338 (31%), Gaps = 60/338 (17%)
Query: 196 INDEASGTPDV-INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DEA+ + L T + S+ L+ F E + K +
Sbjct: 203 FVDEAAHLENAQAVDTALAATTNCRID-----ISSVNGLNNPFAE--KRFSGRVKVKTMH 255
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--P 312
R D +++ ++ ++ V E+ + IPL I+ A++ +
Sbjct: 256 WRDDPRKDDEWYKKQKQKF--NALVVAQEIDIDYSASAEGVLIPLEWIDAAIDADVKLGL 313
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR---TTNNKISGLVEKYRP 369
D+A+EG D R G +++ WS TT I ++ +
Sbjct: 314 TVTGQRFSSLDVADEGKDMNAFGSRLGIRMDYAESWSGKGSNIYGTTLRTIGLVIAQNGR 373
Query: 370 DAIIIDANNTGARTCDYLEMLGY--------HVYRVLGQKRAV----------------D 405
D D++ G E + + + + + +
Sbjct: 374 DFQF-DSDGLGVGVRGDAEAINALPERKAYPKIDAIAFRGSSSVREPDKQVPGAYKGVKN 432
Query: 406 LEFCRNRRTELHVKMADWLE-------------------FASLINHSGLIQNLKSLKSFI 446
++F +NR+ + + + E +S I I+ +
Sbjct: 433 VDFFQNRKAQEYWALRMRFEATYRAVVEKLEYDPDEIISISSRIPDLQKIRMELHQPLYK 492
Query: 447 VPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
TG++ I+ K G S +Y+D M +A +
Sbjct: 493 PSTTGKIMIQ-KTPDGMVSPNYADMTMMLYAPQQTKRG 529
>gi|269941618|emb|CBI50024.1| phage protein [Staphylococcus aureus subsp. aureus TW20]
Length = 599
Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 82/446 (18%), Positives = 132/446 (29%), Gaps = 100/446 (22%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
A RG+GKT L+A L PG +I A +++Q L K E+
Sbjct: 82 ASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGINVL------------EKIENEL 129
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
S +H + + I + S + S D GH ++ DE
Sbjct: 130 LSPLIHREIESINTGNQKPMIAFHNGSWIRVVASN---DNARGHRAN---LLLVDEFVKV 183
Query: 204 P-DVINLGILGFLTERNANRFW---------------IMTSNPRRLSGKFYEIFN----- 242
D+I+ LT + F + S+ S Y+
Sbjct: 184 DEDLIDTVFKKMLTSQREPAFLHKAKYKNYPREENTQMYLSSAWMKSHWAYDSMRSFTKQ 243
Query: 243 ----KPLDDWKRF--QIDTRTVEGIDPSFHEGIIAR-------------------YGLDS 277
K DD K F I T H+ + A +G
Sbjct: 244 MLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQAEGFNKMKFAMEMEAVWWGETE 303
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG---DNTVV 334
F ++ +F P ++ +A P +P ++ D+A GG D +V
Sbjct: 304 SAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKEKRLLAVDVARMGGNSNDASVF 363
Query: 335 VLRR---------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
L R + ++ D D +T +I L + + D I++D N GA D
Sbjct: 364 SLIRLLPKGKQQYERQLNYMEDMEGIDFQTQAIRIRQLYDDFDCDYIVLDLKNVGAGILD 423
Query: 386 YLE------MLGYHVYRVLG------QKRAVDLEF--------CRNRR-TELHVKMADWL 424
L G + E N R E+ +AD
Sbjct: 424 NLRIPLTDIDRGVEYEPLNVSNDDDLASTCKYPEAPRVIHVINATNERNMEMANLLADNF 483
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNT 450
LI+ ++ + F
Sbjct: 484 MRGKF---RLLIREEQAEELFRQDKK 506
>gi|57867562|ref|YP_189190.1| prophage, terminase, ATPase subunit [Staphylococcus epidermidis
RP62A]
gi|57638220|gb|AAW55008.1| prophage, terminase, ATPase subunit, putative [Staphylococcus
epidermidis RP62A phage SP-beta]
Length = 599
Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 82/446 (18%), Positives = 132/446 (29%), Gaps = 100/446 (22%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
A RG+GKT L+A L PG +I A +++Q L K E+
Sbjct: 82 ASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGINVL------------EKIENEL 129
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
S +H + + I + S + S D GH ++ DE
Sbjct: 130 LSPLIHREIESINTGNQKPMIAFHNGSWIRVVASN---DNARGHRAN---LLLVDEFVKV 183
Query: 204 P-DVINLGILGFLTERNANRFW---------------IMTSNPRRLSGKFYEIFN----- 242
D+I+ LT + F + S+ S Y+
Sbjct: 184 DEDLIDTVFKKMLTSQREPAFLHKAKYKNYPREENTQMYLSSAWMKSHWAYDSMRSFTRQ 243
Query: 243 ----KPLDDWKRF--QIDTRTVEGIDPSFHEGIIAR-------------------YGLDS 277
K DD K F I T H+ + A +G
Sbjct: 244 MLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQAEGFNKMKFAMEMEAVWWGETE 303
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG---DNTVV 334
F ++ +F P ++ +A P +P ++ D+A GG D +V
Sbjct: 304 SAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKEKRLLAVDVARMGGNSNDASVF 363
Query: 335 VLRR---------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
L R + ++ D D +T +I L + + D I++D N GA D
Sbjct: 364 SLIRLLPKGKQQYERQLNYMEDMEGIDFQTQAIRIRQLYDDFDCDYIVLDLKNVGAGILD 423
Query: 386 YLE------MLGYHVYRVLG------QKRAVDLEF--------CRNRR-TELHVKMADWL 424
L G + E N R E+ +AD
Sbjct: 424 NLRIPLTDIDRGVEYEPLNVSNDDDLASTCKYPEAPRVIHVINATNERNMEMANLLADNF 483
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNT 450
LI+ ++ + F
Sbjct: 484 MRGKF---RLLIREEQAEELFRQDKK 506
>gi|326784324|ref|YP_004324722.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM5]
gi|310003555|gb|ADO97951.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM5]
Length = 549
Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 66/377 (17%), Positives = 126/377 (33%), Gaps = 51/377 (13%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GK+T+ +LW + P ++V LAN + L L + + L
Sbjct: 85 GKSTIVTSYLLWYVLFNPNVNVAILANKAATAREML--------QRLQLSYENLPKWLQQ 136
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP---- 204
W L G ST + I DE + P
Sbjct: 137 GILQWNRGSLELENGSKIMAASTSASAVRGMSFN-----------VIFLDEFAFIPNHIA 185
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVEGI 261
D + ++ + I+ S P ++ FY++++ + +++ ++ V G
Sbjct: 186 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGSNEYVPTEVHWSEVPGR 243
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD-------- 313
D + E I RVE +F +D+ I + + EP
Sbjct: 244 DEVWKEQTIKNTSEQQ--FRVEFECEFL-GSVDTLISPSKLRIMPYHEPMNQNRGLAVFE 300
Query: 314 ---PYAPLIMGCDIAEE-GGDNTVV-VLRRGPVIEHLFDWSKTD---LRTTNNKISGLVE 365
P I+ D++ G D + V+ + + K + N I + +
Sbjct: 301 QAIPEHNYILTVDVSRGVGNDYSAFTVMDTTTIPYKMVARYKNNEIKPIVLPNIIVDVAK 360
Query: 366 KYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
Y I+ + N+ G + D LE + + G+ + ++T+L VKM+
Sbjct: 361 AYNNAYILCEVNDIGGQVADIIQFDLEYENLLMAAMRGRAGQQLGQGFSGKKTQLGVKMS 420
Query: 422 DWLEFASLINHSGLIQN 438
++ N LI++
Sbjct: 421 TAVKQVGCSNLKALIED 437
>gi|158337379|ref|YP_001518554.1| hypothetical protein AM1_4258 [Acaryochloris marina MBIC11017]
gi|158307620|gb|ABW29237.1| conserved domain protein [Acaryochloris marina MBIC11017]
Length = 476
Score = 78.6 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 71/443 (16%), Positives = 133/443 (30%), Gaps = 77/443 (17%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
W + G L+ F WQ + ++ ++ S + + K GR +G + L
Sbjct: 41 WIKSGGSLKQFILWD-WQKDVVDWIEEPQSLSDSPKLSVIIK-----GRQLGLSQL---C 91
Query: 98 VLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDV 157
W + W + S W+ ++ ++ + L+ S
Sbjct: 92 CSWFLY-------------------KAW-QNSAWVGVIISRTQSDSSLLASRMREMASTA 131
Query: 158 LHCSLGIDSKHYSTMCRT----YSEERPDTFVGHHNTYGMAIINDEASGTPDV--INLGI 211
DS + + D G I+ DEA+ ++
Sbjct: 132 GLVDFSTDSLLKLEISGGGTLHFRSAAVDAVRGI--DSVSGILFDEAAFQTNLKLSLSAA 189
Query: 212 LGFLTERNANRFWIMTSNPRRLSGKFYEIFN-----------------KPLDDW------ 248
+++ ++ I+ S P SG F++ N P++ W
Sbjct: 190 TPAMSQVGSDARIILCSTPNGASGHFFDTLNGFDNCVSDIERIRSGELPPVNKWQREDGN 249
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
I ++V G +PS+ E + L E + ++ A
Sbjct: 250 IAIAIHWKSVYGDNPSYLEDLEKSLSLPKAQIAQEYDLSLTESSS-VVFSFAVVRAAATG 308
Query: 309 EPCPD--PYAPLIMGCDIAEEGGDN--TVVVLRRGP--VIEHLFDWSKTDLRTTNNKISG 362
E P +G D A G D +V + + G + L+ L +I
Sbjct: 309 EYEPQFTEDELYYVGVDPAGSGADYFCSVFLKKTGETFTVSKLYRKRTGTLEVHMGRIDE 368
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
++ P + ++ N G + LE V N + L ++
Sbjct: 369 FIKASNPIKVTVETNGLGQFVYESLESRYGSVIERFNTT--------ANSKGALIGRLQL 420
Query: 423 WLEFASL--INHSGLIQNLKSLK 443
LE + S L Q L S +
Sbjct: 421 ALERGHISYPAGSPLEQELLSFR 443
>gi|113200627|ref|YP_717790.1| terminase large subunit [Synechococcus phage syn9]
gi|76574526|gb|ABA47091.1| terminase large subunit [Synechococcus phage syn9]
Length = 549
Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 57/377 (15%), Positives = 126/377 (33%), Gaps = 51/377 (13%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GK+T+ +LW + ++V LAN + L L + + L
Sbjct: 85 GKSTIVTSYLLWYVLFNANVNVAILANKAATAREML--------QRLQLSYENLPKWLQQ 136
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP---- 204
W L G ST + I DE + P
Sbjct: 137 GILQWNRGSLELENGSKILAASTSASAVRGMSFN-----------VIFLDEFAFVPNHVA 185
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVEGI 261
D + ++ + I+ S P ++ FY++++ + +++ ++ V G
Sbjct: 186 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERKANEYIPTEVHWSEVPGR 243
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA----- 316
D ++ E I RVE +F +D+ I + + + +P +
Sbjct: 244 DAAWKEQTIKNTSEQQ--FRVEFECEFL-GSVDTLISPSKLRTMVYGDPIAEKNGLSMYE 300
Query: 317 ------PLIMGCDIAEE--GGDNTVVVLRRGPVIEHLFDWSKTDLRT---TNNKISGLVE 365
++ D++ G + +V+ + L + + N I +
Sbjct: 301 KTIQGHTYVITADVSRGVSGDYSAFLVIDTTTIPYKLVAKYRNNDIKPILFPNIIVDVAR 360
Query: 366 KYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
Y ++++ N+ G + D LE + + G+ + ++T++ +KM+
Sbjct: 361 NYNHAFVLVEVNDVGGQVADIIQYDLEYDNLLMCAMRGRAGQQLGQGFSGKKTQMGIKMS 420
Query: 422 DWLEFASLINHSGLIQN 438
+ N L+++
Sbjct: 421 SATKQVGCSNLKALLED 437
>gi|262276634|ref|ZP_06054439.1| P-loop protein [alpha proteobacterium HIMB114]
gi|262225214|gb|EEY75661.1| P-loop protein [alpha proteobacterium HIMB114]
Length = 409
Score = 77.5 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/302 (15%), Positives = 102/302 (33%), Gaps = 32/302 (10%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F+ I+ GR GKT L +L + ++ + K +W ++ K
Sbjct: 17 FRVLIT-GRRFGKTHLCLVEILRQARHCDNGKIFYVSPTYRMSKEIMWKQIKKL------ 69
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ W + L I + + +++ D G ++
Sbjct: 70 ----------VKELRWDKYINETELTIVLVNNCQISLKGADKSADNLRGV---GLNFLVL 116
Query: 198 DEASGTPDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL---DDWKRFQI 253
DE + P+ + ++++ AN + P+ Y++F + +WK ++
Sbjct: 117 DEFADIPEEAWTEVLRPTISDKYANGKVLFVGTPKGYGNWSYDMFQRGQAGDPEWKSWKY 176
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
T ++P E A+ LD+ R E F + N + D
Sbjct: 177 TTIEGGQVEPHEIEQ--AKKDLDARSFRQEYEASFETYA--GVVYYNFDRAKNVKPVPYD 232
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
A + +G D + + +++G ++ + ++I+ +Y P +
Sbjct: 233 QNAVIHIGMDFNIDPMSACLFYVKQGISYFFKEIVIYSSNTQEMIDEIT---RQYDPKRV 289
Query: 373 II 374
I+
Sbjct: 290 IV 291
>gi|61806303|ref|YP_214662.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM4]
gi|61563847|gb|AAX46902.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM4]
Length = 550
Score = 77.1 bits (188), Expect = 7e-12, Method: Composition-based stats.
Identities = 57/376 (15%), Positives = 123/376 (32%), Gaps = 49/376 (13%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GK+T+ +LW + ++V LAN + L L + + +
Sbjct: 86 GKSTIVTAYLLWYVLFNANVNVAILANKAPTAREML--------GRLQLSYENLPKWMQQ 137
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
W L G ST + I DE + P+ I
Sbjct: 138 GILGWNKGSLELENGSKILASSTSASAVRGMSFN-----------IIFLDEFAFVPNHIA 186
Query: 209 LGILGFL---TERNANRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVEGID 262
+ + I+ S P ++ +FY++++ + +++ ++ V G D
Sbjct: 187 EQFFASVYPTISSGKSTKVIIISTPHGMN-QFYKLWHDAERGANNYVATEVHWSQVPGRD 245
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--------- 313
+ + I RVE +F +D+ I + + ++P +
Sbjct: 246 DKWKQQTIEN--TSEAQFRVEFECEFL-GSVDTLITPSKLRIMPYKDPIQENRGLAVYEH 302
Query: 314 --PYAPLIMGCDIAEE-GGDNTVVVLRRGPVIEHLFDWSKTDL----RTTNNKISGLVEK 366
I+ D++ G D + + + + + N I +
Sbjct: 303 VQENHNYIITVDVSRGVGNDYSAFCVIDTTTVPYKVVARYKNNQIKPLVFPNLIVDVATN 362
Query: 367 YRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
Y ++ + N+ G + D LE + + G+ + ++T+L +KM+
Sbjct: 363 YNGAYVLCEVNDIGGQVADIIQYDLEYENLLMVSMRGRAGQQLGQGFSGKKTQLGIKMST 422
Query: 423 WLEFASLINHSGLIQN 438
++ N LI++
Sbjct: 423 AVKQVGCSNLKALIED 438
>gi|326782611|ref|YP_004323017.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM1]
gi|310002825|gb|ADO97224.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM1]
Length = 549
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 60/377 (15%), Positives = 123/377 (32%), Gaps = 51/377 (13%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GK+T+ +LW + ++V LAN + L L + + L
Sbjct: 85 GKSTIVTSYLLWYVLFNDNVNVAILANKAATAREML--------QRLQLSYENLPKWLQQ 136
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP---- 204
W L G ST + I DE + P
Sbjct: 137 GILQWNRGSLELENGSKIMAASTSASAVRGMSFN-----------VIFLDEFAFIPNHIA 185
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVEGI 261
D + ++ + I+ S P ++ FY++++ + +++ ++ V G
Sbjct: 186 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGTNEYIPTEVHWSEVPGR 243
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE---------EALNREPCP 312
D + E I RVE +F +D+ I + + E
Sbjct: 244 DDVWKEQTIKNTSEQQ--FRVEFECEFL-GSVDTLISPSKLRIMPYHDPMKENRGLAIFE 300
Query: 313 D--PYAPLIMGCDIAEE-GGDNTVVV-LRRGPVIEHLFDWSKTD---LRTTNNKISGLVE 365
P ++ D++ G D + + + + + + N + + +
Sbjct: 301 QSIPDHNYVITVDVSRGVGNDYSAFCVMDTTTIPYKMVARYRNNEIKPIILPNIVVDVAK 360
Query: 366 KYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
Y I+ + N+ G + D LE + + G+ + ++T+L VKM+
Sbjct: 361 NYNNAYILCEVNDIGGQVADIIQFDLEYENLLMAAMRGRAGQQLGQGFSGKKTQLGVKMS 420
Query: 422 DWLEFASLINHSGLIQN 438
++ N LI++
Sbjct: 421 TAVKQVGCSNLKALIED 437
>gi|170023468|ref|YP_001719973.1| hypothetical protein YPK_1222 [Yersinia pseudotuberculosis YPIII]
gi|169750002|gb|ACA67520.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII]
Length = 534
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/402 (13%), Positives = 122/402 (30%), Gaps = 65/402 (16%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F + W + + I+ ++ + + +
Sbjct: 143 ALFWKARKFIETLPAEFRGSWDNKKHAPYMRIEFPDSGSIIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DE++ + I L++ R I S+ ++ F + + F
Sbjct: 198 TMYFVDESAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMNNPFAQ--KRHGGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
R+ D ++ + + E+ + IP ++ A+ +
Sbjct: 252 FHWRSDPRKDDAW-YKKECEKIDNPVIVAQELDLNYNAAAEGILIPSEWVQAAIGAHTKL 310
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYR 368
P I D+A+EG D R G +++ L WS +D+ T L ++
Sbjct: 311 GITPSGARIGALDVADEGIDLNAFSSRTGVLLDRLKAWSGKGSDIYATTQDAMILSDEND 370
Query: 369 PDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKR---------------- 402
D ++ D++ GA ++ + G
Sbjct: 371 CDYLLYDSDGLGAGCRGDGRVINETRQKAGQRQVEIKPFRGSGEVIYPDKPVFKADTKRD 430
Query: 403 -AVDLEFCRNRRTELHVKMADWLEFA--------------------SLINHSGLIQNLKS 441
+ ++ NR+ + + + +L LI L S
Sbjct: 431 ARTNKDYFANRKAQGWWALRMRFQEVYRAVVKGMPFDPDEIISIDENLPEKEKLIAEL-S 489
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRS 483
++ + G++ ++ K G +S +++D +M +A R
Sbjct: 490 QPTYTINGAGKVTVD-KAPSGTRSPNHADTVMICYAPEKIRR 530
>gi|326783331|ref|YP_004323723.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn33]
gi|310005278|gb|ADO99667.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn33]
Length = 549
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 64/393 (16%), Positives = 127/393 (32%), Gaps = 64/393 (16%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GK+T+ +LW + P ++V LAN + L L + + L
Sbjct: 85 GKSTIVTAYLLWYVLFNPNVNVAILANKAATAREML--------GRLQLSYENLPKWLQQ 136
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP---- 204
W L G ST + I DE + P
Sbjct: 137 GILQWNRGSLELENGSKILAASTSASAVRGMSFN-----------VIFLDEFAFVPNHIA 185
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVEGI 261
D + ++ + I+ S P ++ FY++++ + +++ ++ V G
Sbjct: 186 DQFFSSVYPTVSS-GKSTKVIIISTPHGMN-MFYKLWHDAEQGKNEYLPTEVHWSQVPGR 243
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA-----------LNREP 310
D ++ E I +VE +F +D+ I + + L
Sbjct: 244 DAAWKEQTIKNTSEQQ--FKVEFECEFL-GSVDTLISPSKLRTMPYVDPVAQNKGLAIYE 300
Query: 311 CPDPYAPLIMGCDIAEE-GGDNTV-VVLRRGPVIEHLFDWSKTD---LRTTNNKISGLVE 365
+ I+ D++ G D + VV+ + + + + N I + +
Sbjct: 301 RVEAEHNYIITVDVSRGIGNDYSAFVVVDTTTMPYKVVARYRNNEIKPIIFPNIIIDVAK 360
Query: 366 KYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
Y I+ + N+ G + D LE + + G+ + ++T+L VKM+
Sbjct: 361 NYNNAYILCEVNDIGGQVADIIQFDLEYENLLMAAMRGRAGQQLGQGFSGKKTQLGVKMS 420
Query: 422 DWLEFAS-------------LINHSGLIQNLKS 441
++ LI I L +
Sbjct: 421 SAVKQVGCSNLKALIEEDKLLIPDYETIAELTT 453
>gi|294508906|ref|YP_003566117.1| hypothetical protein PSR_11004 [Salinibacter ruber M8]
gi|294342043|emb|CBH22709.1| conserved hypothetical protein [Salinibacter ruber M8]
Length = 255
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 50/261 (19%), Positives = 79/261 (30%), Gaps = 40/261 (15%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
P WQ + ++ + A + GKTT +A L L
Sbjct: 7 DPDPWQEALL----------TSDWERALLNCARQS----GKTTASAALALETALEATDSL 52
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V+ LA + Q K L V + QS + + S I
Sbjct: 53 VLILAPARRQSKEFL-RSVRSLYRDAAPDGGLDKQS------ELRLRLENESRIIALPGK 105
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
R Y+ + +I DEA+ PD + L ++ S
Sbjct: 106 EGTVRGYTAD--------------LVIADEAARVPDAAYVATRPMLAVTGGR--FVGLST 149
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
P G FYE + P +W++ ++ + + +F E G R E +F
Sbjct: 150 PAGQRGWFYEAWTDPGQEWEQVKVTGQDCPRMTEAFLEQERREMG--DWQFRSEYMCEFT 207
Query: 290 QQDIDSFIPLNIIEEALNREP 310
D IE +L E
Sbjct: 208 D-TEDQLFATEHIESSLTSEV 227
>gi|323186590|gb|EFZ71927.1| gp33 TerL protein [Escherichia coli 1357]
Length = 503
Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/369 (13%), Positives = 105/369 (28%), Gaps = 58/369 (15%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 198 TLYFVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMNNPFAQ--KRHSGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC- 311
R+ D + + + E+ + IP ++ A++
Sbjct: 252 FHWRSDPRKDDEW-YHKECEKIDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDAHIRL 310
Query: 312 -PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYR 368
P + D+A+EG D LR G ++ + +WS +D+ + K+ GL + +
Sbjct: 311 GIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGKGSDIYDSVVKVFGLCDDFG 370
Query: 369 PDAIIIDANNTGART------CDYLEM---------------------LGYHVYRVLGQK 401
D D + GA + L V G+
Sbjct: 371 ADEFRFDEDGLGAGVRGDARAINELREAEGICQITATPFRGSGSVFHPENEAVPGDNGKP 430
Query: 402 RAVDLEFCRNRRTELHVKMADWLE-----FASLINHSGLIQNLKSLKSFIVPNTGELAIE 456
++ +F N + + + + I ++ S + N L +E
Sbjct: 431 ARLNKDFFVNAKAQGWWHLRKLFRNTFRALQGMEYDPDEIISISST----MENKDRLLME 486
Query: 457 ------SKR 459
SK+
Sbjct: 487 LSQPTWSKK 495
>gi|326782863|ref|YP_004323261.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-RSM4]
gi|310004122|gb|ADO98516.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-RSM4]
Length = 547
Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 62/377 (16%), Positives = 120/377 (31%), Gaps = 51/377 (13%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GK+T+ +LW + ++V LAN + L L + +
Sbjct: 83 GKSTIVTAYLLWYVLFNANVNVAILANKAATAREML--------QRLQLSYENLPNWMQQ 134
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP---- 204
W L G ST + I DE + P
Sbjct: 135 GILQWNRGSLELENGSKIMAASTSASAVRGMSFN-----------VIFLDEFAFIPNHIA 183
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVEGI 261
D + ++ + I+ S P ++ FY++++ + +++ ++ V G
Sbjct: 184 DQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGTNEYVPTEVHWSEVPGR 241
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE-----------EALNREP 310
D + E I RVE +F +D+ I + + L
Sbjct: 242 DDVWKEQTIKNTSESQ--FRVEFECEFL-GSVDTLIAPSKLRIMPYHDPITSNRGLAVYE 298
Query: 311 CPDPYAPLIMGCDIAEE-GGDNTVVV-LRRGPVIEHLFDWSKTD---LRTTNNKISGLVE 365
P I+ D++ G D + + + + K + N I + +
Sbjct: 299 QVIPEHNYIITVDVSRGVGNDYSAFCVIDTTTIPYKMVARYKNNEIKPIVLPNIIVDIAK 358
Query: 366 KYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
Y I+ + N+ G + D LE + + G+ + ++T+L VKM+
Sbjct: 359 NYNNAYILCEVNDIGGQVADIIQFDLEYENLLMAAMRGRAGQQLGQGFSGKKTQLGVKMS 418
Query: 422 DWLEFASLINHSGLIQN 438
+ N LI+
Sbjct: 419 TATKQVGCSNLKALIEE 435
>gi|326783550|ref|YP_004323947.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
Syn19]
gi|310005053|gb|ADO99443.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
Syn19]
Length = 549
Score = 74.8 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 64/377 (16%), Positives = 126/377 (33%), Gaps = 51/377 (13%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GK+T+ +LW + ++V LAN + L L + + L
Sbjct: 85 GKSTIVTSYLLWYVLFNQNVNVAILANKAATSREML--------QRLQLSYENLPKWLQQ 136
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP---- 204
W L G + S R +F I DE + P
Sbjct: 137 GILQWNRGSLELENGSKI---MAASTSSSAVRGMSFN--------VIFLDEFAFVPNHIA 185
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVEGI 261
D + ++ + I+ S P ++ FY++++ + +++ ++ V G
Sbjct: 186 DQFFSSVYPTISS-GQSTKVIIISTPHGMN-MFYKLWHDAERSKNEYIPTEVHWSEVPGR 243
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC---------- 311
D + E IA +VE +F +D+ I + + +P
Sbjct: 244 DAKWKEQTIANTSEQQ--FKVEFECEFL-GSVDTLISPSKLRVMPYHDPIAQNKGLAVYK 300
Query: 312 -PDPYAPLIMGCDIAEE--GGDNTVVVLRRGPVIEHLFDWSKTD---LRTTNNKISGLVE 365
+P I+ D+A + V+ V + + + N I + +
Sbjct: 301 RAEPDHNYIITVDVARGTSNDYSAFCVMDTTTVPYEMVARYRNNEIKPIVFPNIIVDVAK 360
Query: 366 KYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
Y I+ + N+ G + D LE + + G+ + ++T+L VKM+
Sbjct: 361 NYNNAYILCEVNDIGGQVADIIQFDLEYENLLMAAMRGRAGQQLGQGFSGKKTQLGVKMS 420
Query: 422 DWLEFASLINHSGLIQN 438
++ N LI+
Sbjct: 421 TAVKQVGCSNLKALIEE 437
>gi|18138498|ref|NP_542602.1| probable terminase [Halorubrum phage HF2]
gi|32453919|ref|NP_861683.1| hypothetical protein HalHV1gp095 [Halovirus HF1]
gi|18000439|gb|AAL55022.1| probable terminase [Halorubrum phage HF2]
gi|32346487|gb|AAO61393.1| hypothetical protein [Halovirus HF1]
Length = 563
Score = 74.8 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 74/464 (15%), Positives = 127/464 (27%), Gaps = 82/464 (17%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GR IG + + +L +P L+ ++ Q + +S +L+ N
Sbjct: 75 GRRIGVSYIIGICILIEALLKPDTFYPILSKTKGQSN----SRISDIKTLIKNAK----- 125
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ + D + G K Y+ + E P + DE +
Sbjct: 126 -IDIPLEKDNQDEIVLPNGSRIKAYTGDPDSARGEDPPK----------TVFIDEMAFLE 174
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE---------------------IFNK 243
D T + + S P+ + +F + F
Sbjct: 175 DQSATLDAYLPTISLGSSQMVQVSTPKAQNDEFMDANERGTPDGRNDFGILALKQPTFKN 234
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIA-RYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ + + VE + F + D + E + P D F + I
Sbjct: 235 ADEIQTDVSLFEQDVEPVRGDFDLMAAETQRASDPNGFAQEYLCR-PVSDEYRFFSMPTI 293
Query: 303 EEALNREPCPD---------PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW----- 348
E+A+ R D L+MG DI D +VV +L
Sbjct: 294 EDAMGRGAADDYSYGLRRYDTPNTLVMGVDIGFNSDDTAIVVFEHEGPRRYLRYHEVVND 353
Query: 349 -----------SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML-GYHVYR 396
S+ + +IS + +I+D G D + G
Sbjct: 354 RVLEQAGITPSSRQNPAAVAERISQVYNGMGVSNVIMDMTGVGQGFHDEVRRRIGRGYTG 413
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIE 456
+ + N LH + WL L + L ++ + +
Sbjct: 414 FNFSAKDKVEKMMGNMNYALHNDL-VWL-----PEDDSLREQLGAIVKQQKEDWQKPKFT 467
Query: 457 SKRVKGAKSTDYSDGLMYT--FAENPPRSDMDFGRCPSYQYEGV 498
K + D D L A PP D R Q E V
Sbjct: 468 GKE----HAPDGKDDLAMATVLAAFPPNFKSDKSRN-LQQREDV 506
>gi|326784562|ref|YP_004324947.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM7]
gi|310004595|gb|ADO98987.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM7]
Length = 550
Score = 74.4 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 61/378 (16%), Positives = 128/378 (33%), Gaps = 51/378 (13%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
GK+T+ +LW + + ++V LAN + L L + + L
Sbjct: 85 TGKSTIVTSYLLWYVLFKANVNVAILANKAATSREML--------QRLQLSYENLPKWLQ 136
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--- 204
W L G + S R +F I DE + P
Sbjct: 137 QGILQWNRGSLELENGSKI---MAASTSSSAVRGMSFN--------VIFLDEFAFVPNHI 185
Query: 205 -DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVEG 260
D + ++ + I+ S P ++ FY++++ + +++ ++ V G
Sbjct: 186 ADQFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDAERGKNEYIPTEVHWSAVPG 243
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--------- 311
D ++ + IA +VE +F +D+ I + + +P
Sbjct: 244 RDAAWKDQTIANTSEQQ--FKVEFECEFL-GSVDTLISPSKLRTMPYEDPIIQNRGLAVY 300
Query: 312 --PDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVI--EHLFDWSKTDL--RTTNNKISGLV 364
+ I+ D+A D + + + E + + D+ N I +
Sbjct: 301 KQVEKDHNYIVTVDVARGVSQDYSAFCIIDTTTVPYELVAKYRNNDIKPIIFPNVIVDVA 360
Query: 365 EKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ Y ++ + N+ G + D LE + G+ + ++T+L VKM
Sbjct: 361 KNYNNAYVLCEVNDIGGQVADIIQFDLEYENLLQVAMRGRAGQQLGQGFSGKKTQLGVKM 420
Query: 421 ADWLEFASLINHSGLIQN 438
+ ++ N L++
Sbjct: 421 STAVKAVGCSNLKALLEE 438
>gi|218296727|ref|ZP_03497433.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
gi|218242816|gb|EED09350.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
Length = 425
Score = 74.4 bits (181), Expect = 5e-11, Method: Composition-based stats.
Identities = 73/377 (19%), Positives = 127/377 (33%), Gaps = 46/377 (12%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
GK+ G + + L+ E Q + AE +K + M+S
Sbjct: 28 TGKSFALTLEAALHAVEHRGSTWVLLSAGERQSREL--AEKAKAHLDAMKQVGTLMES-R 84
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-- 205
L L S+ P T G Y ++ DE + D
Sbjct: 85 FFEGGESVTQLEIRLPNLSRLIFLPA------NPRTARG----YTGNVVLDEFAFHQDSE 134
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE----GI 261
I + +T R + + S P GKF+E++ K W R ++ +
Sbjct: 135 AIWAAMYPIIT-RRPDLKIRVMSTPNGPRGKFWELWEKGGPAWSRHKVTIYDAVAQGLPV 193
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP--LI 319
DP +A D + + E +F + +F+P ++I EA RE P+ P
Sbjct: 194 DPEELRAGLA----DDFIWQQEYLCEFLSAEE-AFLPWSLILEAEAREDPRGPWNPDQAY 248
Query: 320 MGCDIAEEGGDNTVVVL--RRGPV--IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
+G D+ D TV V+ R G V + L + ++ L+ + R + D
Sbjct: 249 LGVDVGRH-RDLTVFVVLERVGDVYWVRLLETLHRAPFAQQEARLHALLPQVRRACL--D 305
Query: 376 ANNTGARTCDYLEM-LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF--ASLINH 432
A G + GY V V +L ++ + E +
Sbjct: 306 ATGLGEMLAENARRAFGYKVEPVKFTPEVK---------ADLAQRLRLFFEDRRVRIPED 356
Query: 433 SGLIQNLKSLKSFIVPN 449
L ++L S++ + P+
Sbjct: 357 RALREDLHSVRRIVTPS 373
>gi|182682964|ref|YP_001837088.1| terminase, large subunit [Enterobacteria phage EPS7]
gi|182630676|gb|ACB97608.1| terminase, large subunit [Enterobacteria phage EPS7]
Length = 438
Score = 73.6 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 60/329 (18%), Positives = 115/329 (34%), Gaps = 48/329 (14%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N++ +P +S R +GK+ + A+ + +L P + V+ +A + + L W
Sbjct: 45 IINALEDPRHRFVTACVS--RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGW 100
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+++ + ++ + ++ + S + D+ V
Sbjct: 101 SQIR----------------GLIKKYGLQTERENAKDKEIELANGSLFKLASAAQADSAV 144
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFL--TERNANRFWIMTSNPRRLSGKFYEIF-- 241
G II DEA+ DV L T N + S PR G +++ F
Sbjct: 145 GRSYD---FIIFDEAA-ISDVGGAAFDIQLRPTLDKPNSKALFISTPRG--GNWFKEFYE 198
Query: 242 ---NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
N+ L +W R D + E AR + + R E F + F
Sbjct: 199 KGFNETLPNWVSIHGTYRDNPRADLNDIEE--ARRTVSKNYFRQEYEADFSVFEGQIFDT 256
Query: 299 LNIIE-----EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR----GPVIEHLFDWS 349
N IE + + D ++G D+ D T V+ + V L ++
Sbjct: 257 FNAIEHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAVLTIKYHYDTDVYYVLEEYQ 314
Query: 350 KTD--LRTTNNKISGLVEKYRPDAIIIDA 376
+ + I +++Y D I +D+
Sbjct: 315 QAEKTTAQHATYIQHCIDRYNVDRIFVDS 343
>gi|46401884|ref|YP_006983.1| terminase, large subunit [Enterobacteria phage T5]
gi|45775062|gb|AAS77194.1| terminase, large subunit [Enterobacteria phage T5]
gi|59897286|gb|AAX12081.1| ORF144 [Enterobacteria phage T5]
Length = 438
Score = 73.6 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 56/329 (17%), Positives = 113/329 (34%), Gaps = 48/329 (14%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N++ +P +S R +GK+ + A+ + +L P + V+ +A + + L W
Sbjct: 45 IINALEDPRHRFVTACVS--RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGW 100
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+++ + ++ + ++ + S + D+ V
Sbjct: 101 SQIR----------------GLIKKYGLQTERENAKDKEIELANGSLFKLASAAQADSAV 144
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFL--TERNANRFWIMTSNPRRLSGKFYEIF-- 241
G II DEA+ DV L T N + S PR G +++ F
Sbjct: 145 GRSYD---FIIFDEAA-ISDVGGDAFRVQLRPTLDKPNSKALFISTPRG--GNWFKEFYA 198
Query: 242 ---NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ L +W R D + E AR + + R E F + F
Sbjct: 199 YGFDDTLPNWVSIHGTYRDNPRADLNDIEE--ARRTVSKNYFRQEYEADFSVFEGQIFDT 256
Query: 299 LNIIE-----EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFD 347
N I+ + + D ++G D+ D T V+ + + +
Sbjct: 257 FNAIDHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAVLTIKYHYDTDTYYVLEEYQ 314
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
++ I +++Y+ D I +D+
Sbjct: 315 QAEKTTAQHAAYIQHCIDRYKVDRIFVDS 343
>gi|326633035|ref|YP_004306624.1| terminase large subunit [Enterobacteria phage SPC35]
gi|321272229|gb|ADW80121.1| terminase large subunit [Enterobacteria phage SPC35]
Length = 438
Score = 73.2 bits (178), Expect = 9e-11, Method: Composition-based stats.
Identities = 55/329 (16%), Positives = 113/329 (34%), Gaps = 48/329 (14%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N++ +P +S R +GK+ + A+ + +L P + V+ +A + + L W
Sbjct: 45 IINALEDPRHRFVTACVS--RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGW 100
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+++ + ++ + ++ + S + D+ V
Sbjct: 101 SQIR----------------GLIKKYGLQTERENAKDKEIELANGSLFKLASAAQADSAV 144
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFL--TERNANRFWIMTSNPRRLSGKFYEIF-- 241
G II DEA+ DV L T N + S PR G +++ F
Sbjct: 145 GRSYD---FIIFDEAA-ISDVGGDAFRVQLRPTLDKPNSKALFISTPRG--GNWFKEFYA 198
Query: 242 ---NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ L +W R D + E AR + + R E F + F
Sbjct: 199 YGFDDTLPNWVSIHGTYRDNPRADLNDIEE--ARRTVSKNYFRQEYEADFSVFEGQIFDT 256
Query: 299 LNIIE-----EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFD 347
N I+ + + D ++G D+ D T V+ + + +
Sbjct: 257 FNAIDHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAVLTIKYHYDTDTYYVLEEYQ 314
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
++ I +++Y+ D + +D+
Sbjct: 315 QAEKTTAQHAAYIQHCIDRYKVDRVFVDS 343
>gi|116624478|ref|YP_826634.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
Ellin6076]
gi|116227640|gb|ABJ86349.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
Ellin6076]
Length = 260
Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/260 (17%), Positives = 82/260 (31%), Gaps = 27/260 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
W + V + + + ++ R GK+T+ A + G I
Sbjct: 25 EWARRALGFEADAAQARVLDTRSK--RVLLNCTRQWGKSTVTAARAVHEAVKNAGSLTIA 82
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+ + Q T + V K + EM+ + S +
Sbjct: 83 VTPTARQ--TGEF--VRKAATFAS---GLEMRVKGDGHNEMSLAFPNGSRIVGLPGTEAT 135
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
R +S ++ DEAS D + + + L +A W+M S P
Sbjct: 136 VRGFSA-------------VTLLLIDEASRVGDDLYMAMRPMLA-VSAGTLWLM-STPHG 180
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
G FYE + + W+R + + E G + R E C +F +
Sbjct: 181 KRGFFYEAWANGGETWERVSVKAEDCPRFKAEYLEEERQVMGER--IYRQEYCCEF-GET 237
Query: 293 IDSFIPLNIIEEALNREPCP 312
+ ++IE A + E P
Sbjct: 238 SGAVFDRDLIEAAFSDEVTP 257
>gi|114320225|ref|YP_741908.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1]
gi|114226619|gb|ABI56418.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1]
Length = 463
Score = 72.4 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 71/473 (15%), Positives = 133/473 (28%), Gaps = 64/473 (13%)
Query: 15 LFDLMWSDEIKLS-FSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
+ D+M + F W L GF E S
Sbjct: 5 IRDVMTDPALFGGQFGGDT-----WAAWRALLSGFYGLPLDDAEAQHWHALTDRESAPQS 59
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK--- 130
+ + GR GK+ A L ++ + + A EV+
Sbjct: 60 AHDELWLVV--GRRGGKSNAAALLAVYEACFKDHRDAL--AP----------GEVATTRV 105
Query: 131 -WLSLLPNKHWFEMQSLSLHPAPWYSDVL-----HCSLGIDSKHYSTMCRTYSEERPDTF 184
+ F S +H P ++ + ++ R TF
Sbjct: 106 MAADRAQARSVFRYISGLMHANPMLERLIVREDRESIELSNRAVIEVGTASFRTTRGYTF 165
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
+D+++ I + L N I S+P G+ +E + +
Sbjct: 166 AAVIADEVAFWRSDDSANPDSEIIAAVRPGLATLNGK--LIALSSPYARRGELWENYRRH 223
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIE 303
+ ++PS E ++ E +F + D+++F+ ++E
Sbjct: 224 YGKASPILVAQAPSRTMNPSLPERVVTEAMERDPASAAAEYLAEF-RTDVETFLQREVVE 282
Query: 304 EALNREPCPDPYA---PLIMGCDIAEEGGDN--TVVVLRRGPV-IEHLFDWSKTDLRTTN 357
A P PY D A G D + R G + + K
Sbjct: 283 AATRPTPLELPYNKRVTYTAFVDPAGGGADEFTAAIGHREGERVVVDVLRARKGTPAEIV 342
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ + L++ YR I D G+ D G V Q + R+ ++
Sbjct: 343 AEYADLLKSYRITRAISDRY-AGSWPADEFSRHGITVE----QAAKPKSDLYRDMLASMN 397
Query: 418 VKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAK-STDYS 469
L L+ L +++E + +G + S D++
Sbjct: 398 SAR------VELPPDDRLMTQL-------------ISLERRTARGGRDSIDHA 431
>gi|51512091|gb|AAU05290.1| terminase large subunit [Enterobacteria phage T5]
Length = 438
Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/329 (16%), Positives = 112/329 (34%), Gaps = 48/329 (14%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N++ +P +S R +GK+ + A+ + +L P + V+ +A + + L W
Sbjct: 45 IINALEDPRHRFVTACVS--RRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYS-LANIGW 100
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+++ + ++ + ++ + S + D+ V
Sbjct: 101 SQIR----------------GLIKKYGLQTERENAKDKEIELANGSLFKLASAAQADSAV 144
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFL--TERNANRFWIMTSNPRRLSGKFYEIF-- 241
G II DEA+ DV L T N + S PR G +++ F
Sbjct: 145 GRSYD---FIIFDEAA-ISDVGGDAFRVQLRPTLDKPNSKALFISTPRG--GNWFKEFYA 198
Query: 242 ---NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ L +W R D + E AR + + R E F + F
Sbjct: 199 YGFDDTLPNWVSIHGTYRDNPRADLNDIEE--ARRTVSKNYFRQEYEADFSVFEGQIFDT 256
Query: 299 LNIIE-----EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFD 347
N + + + D ++G D+ D T V+ + + +
Sbjct: 257 FNATDHVKDLKGMRHFFKDDEAFETLLGIDVGY--RDPTAVLTIKYHYDTDTYYVLEEYQ 314
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
++ I +++Y+ D I +D+
Sbjct: 315 QAEKTTAQHAAYIQHCIDRYKVDRIFVDS 343
>gi|307308946|ref|ZP_07588629.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti
BL225C]
gi|306900580|gb|EFN31193.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti
BL225C]
Length = 408
Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 24/202 (11%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN--KHWFEMQS 145
GKT + A V W + + V SE+ +K +W+ + + + + K F++ +
Sbjct: 208 WGKTYVAAIAVWWSLVCFDDVKVTIFGPSESLIKNGMWSNLQALHARMASSFKDLFDVSA 267
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ R S + G H + D+A G +
Sbjct: 268 TRVSRKTAAP------------SCFAEYRLVSADNASAARGIHAVNN-FVFVDDADGVSE 314
Query: 206 VINLGILGFLTERNANRFWI--MTSN--PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
V+ ++ + + N + M +N P+ + E+FN+ L + +
Sbjct: 315 VVIAYLMNIMIDPNPKLCLLSTMFANETPKLETVTEAELFNEALSSLRAM-VSGEV--RT 371
Query: 262 DPSFHEGIIARYGLDSDVTRVE 283
DP + E I RY L++
Sbjct: 372 DPVWLEAI--RYQLENAEYLAR 391
>gi|331650684|ref|ZP_08351739.1| conserved hypothetical protein [Escherichia coli M605]
gi|331040472|gb|EGI12647.1| conserved hypothetical protein [Escherichia coli M605]
Length = 414
Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/325 (13%), Positives = 98/325 (30%), Gaps = 45/325 (13%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 89 ALFWKARKFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIGR-----GDRT 143
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ DEA+ + I L++ R I S+ ++ F + + F
Sbjct: 144 TLYLVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMANPFAQ--KRHGGKIPVFT 197
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
R D ++ + +D+ V E+ + IP ++ ++
Sbjct: 198 FHWRDDPRKDEEWYRRECEK--IDNPVVVAQELDLNYSASAEGVLIPSEWVQATVDAHIK 255
Query: 312 --PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKY 367
P + D+A+EG D R G ++E++ +WS +D+ + K+ G E+
Sbjct: 256 LGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQD 315
Query: 368 RPDAIIIDANNTGART------CDYLEMLGYH---------------------VYRVLGQ 400
+ D + GA + L + V GQ
Sbjct: 316 NLEEFRFDEDGLGAGVRGDARAINELRNVARRPSILATPFRGSGAVFDPDDEAVRGDNGQ 375
Query: 401 KRAVDLEFCRNRRTELHVKMADWLE 425
++ +F N + + ++ +
Sbjct: 376 AARLNKDFFANAKAQSWWRLRKLFQ 400
>gi|61806000|ref|YP_214360.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM2]
gi|61374509|gb|AAX44506.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM2]
gi|265525210|gb|ACY76007.1| terminase large subunit gp17 [Prochlorococcus phage P-SSM2]
Length = 547
Score = 72.1 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 62/378 (16%), Positives = 124/378 (32%), Gaps = 51/378 (13%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
GK+T +L ++V LAN + + L L + + +
Sbjct: 82 TGKSTTCISYLLHYAVFNDNVNVAVLANKASTARDLL--------GRLQLAYENLPRWMQ 133
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--- 204
W L G ST + I DE + P
Sbjct: 134 QGIISWNKGSLELENGSKISANSTSSSAVRGGSYN-----------VIFLDEFAFIPNHI 182
Query: 205 -DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVEG 260
D + +T + I+ S PR ++ FY +++ K ++ + V G
Sbjct: 183 ADDFFASVYPTITS-GQSTKVIIVSTPRGMN-HFYRMWHDSEKGKSEYVATDVHWSEVPG 240
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI----PLNIIEEA-------LNRE 309
D + E IA ++E +F +++ I N++ EA L+
Sbjct: 241 RDEEWKEQTIANTSEQQ--FKIEFECEFL-GSVNTLINPAKLRNLVYEAPKTRNAGLDIY 297
Query: 310 PCPDPYAPLIMGCDIAEE-GGDNTV-VVLRRGPVIEHLFDWSKTD---LRTTNNKISGLV 364
P I+ D+A G D + +V + + + N I +
Sbjct: 298 ETPVKEHNYIITVDVARGLGNDYSAFIVFDTTEFPYKVVAKYRNNEIKPMLFPNIILDVA 357
Query: 365 EKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ Y ++I+ N+ G + LE + + G+ + + ++T+L V+M
Sbjct: 358 KGYNNAYLLIEVNDIGDQVASILQYDLEYENVLMASMRGRAGQIVGQGFSGKKTQLGVRM 417
Query: 421 ADWLEFASLINHSGLIQN 438
++ N ++++
Sbjct: 418 TSAVKKLGCSNLKTMMED 435
>gi|255929035|ref|YP_003097347.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
S-RSM4]
gi|255705321|emb|CAR63310.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
S-RSM4]
Length = 550
Score = 72.1 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/358 (13%), Positives = 103/358 (28%), Gaps = 59/358 (16%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+Q E + + N P GK+T +L+ +++
Sbjct: 62 DFQKEILRDFHENRFNIAKLPRQ------------TGKSTTVVAYLLYYAIFYDSVNIGI 109
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
LAN + + L L + + + W + G ST
Sbjct: 110 LANKASTARELL--------GRLQLAYENLPKWMQHGILVWNKGNVELENGSKILAASTS 161
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI----NLGILGFLTERNANRFWIMTS 228
+ + DE + P+ + + +T + I+ S
Sbjct: 162 ASAVRGMSFN-----------ILFLDEFAFVPNHVAEQFFASVYPTITS-GKSTKVIIIS 209
Query: 229 NPRRLSGKFYEIF---NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
P ++ FY+++ + +D+ ++ V G D + E I E
Sbjct: 210 TPNGMN-HFYKMWEDARRGKNDYVTNEVHWSQVPGRDAKWKEETIKN--TSPRQFAQEFE 266
Query: 286 GQFPQQDIDSFIPLNIIE-----------EALNREPCPDPYAPLIMGCDIAE--EGGDNT 332
F D+ I ++ L+ I+ D+A G +
Sbjct: 267 CDFL-GSADTLISPAKLQNIPFHDPIQSNAGLDVYERVQKDHEYIITVDVARGIGGDYSA 325
Query: 333 VVVLRRGPVIEHLFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
+V + + + + + I + ++Y ++++ N+ G L
Sbjct: 326 FIVFDITTMPYKIVAKYRNNEIKPVLFPSVIFQVCKEYNNPYVLVEVNDIGDSIAATL 383
>gi|329849103|ref|ZP_08264131.1| phage terminase, large subunit, PBSX family [Asticcacaulis
biprosthecum C19]
gi|328844166|gb|EGF93735.1| phage terminase, large subunit, PBSX family [Asticcacaulis
biprosthecum C19]
Length = 430
Score = 71.3 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 69/435 (15%), Positives = 133/435 (30%), Gaps = 43/435 (9%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+E + A+ + F+ A GRG K+ A ++ PG V+ + +
Sbjct: 24 ILEPIPAYRFLTKKPLGSFRFRAA-YGGRGAAKSWEFANAAIYHSLNTPGARVVFVREIQ 82
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
L + + V L + F + H +++L L +
Sbjct: 83 GSLADSAFTLVRNRLEAYGLEGAFRQANGRFHHVENGAEILFLGL-------------WR 129
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+P+ I +EAS ++ + + W + NP +
Sbjct: 130 GNKPEGIKSL--EGATLTIWEEASEGRQRSLDVLIPTVLRTPQSELWCLW-NPMLPTDPV 186
Query: 238 YEIFNKPLDDWKRF--QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
F ++ K +++ + + E + D G + ++
Sbjct: 187 DRFFRGDVEPQKTICRRVNWDSNPHFPEALREQMALDRKKDPLRAAWIWDGAYMPSAQNA 246
Query: 296 FIPLNIIEEAL--NREPCPDPYAPLIMGCDIAEEGGDNT--VVVLRRGPVIEHLFDWSKT 351
+++ A R+ + +++G D A GGD VV R G + D
Sbjct: 247 LWTRELLDRAWVQGRDKVMEAVGRVVVGVDPAGGGGDEVGIVVAGRYGAEGYIVLDDRSV 306
Query: 352 DLRTT---NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
R+ ++ V+ Y D ++++ N G L V V + R V
Sbjct: 307 AARSPEGWATEVLRAVDAYAADCVVVEKN-FGG----DLVASNLRVNGVHCRIREVTASR 361
Query: 409 CRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
+ R E + + + L L + G KS D
Sbjct: 362 GKQVRAEPIAALYEQHKVYHRRPFPALEGQLL-----QMTPNGYAV-------KGKSPDR 409
Query: 469 SDGLMYTFAENPPRS 483
D L++ E RS
Sbjct: 410 LDALVWALTELSRRS 424
>gi|291336011|gb|ADD95601.1| large terminase protein [uncultured phage MedDCM-OCT-S09-C7]
Length = 526
Score = 71.3 bits (173), Expect = 4e-10, Method: Composition-based stats.
Identities = 58/355 (16%), Positives = 110/355 (30%), Gaps = 47/355 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ A R GK+ + +LW + P ++V LAN +
Sbjct: 80 VLASRQSGKSITSCAYLLWFLLFNPEVTVAVLANKG-----------------AIAREMI 122
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR-TYSEERPDTFVGHHNTYGMAIINDEA 200
L P++ L S ++ + + + G + DE
Sbjct: 123 ARMVTMLESVPFFLQPGVKILNKGSIEFANDSKVVAAATSSSSIRGL---SINLLYLDEF 179
Query: 201 SGTPDV--INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD---WKRFQIDT 255
+ D +T + I+TS + FY+I+ + D +K F I+
Sbjct: 180 AFVDDAETFYTATYPVVTS-GKDSKVIITSTANGVGNMFYKIYESAVHDQSEYKHFLINW 238
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP----- 310
V G D + + IA S+ + G ++ I N + +++EP
Sbjct: 239 FDVPGRDEEWKKETIAN---TSEAQFEQEYGNSFLGTGNTLINSNTLLGLMSKEPDWNKD 295
Query: 311 ------CPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVIEHLFDWSKTDL---RTTNNK 359
P I D+ +T ++ + ++ +
Sbjct: 296 GVKVYEKPKEGHTYITTVDVSKGRGIDYSTFTIMDISVKPFRQVCTYRDNMISPMLFPDL 355
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCRNRR 413
I+ + Y +II+ N G L + Y V G +A D+ +R
Sbjct: 356 IAKYTKPYNESLVIIENNAEGGMVATQLHYDIEYPNVFVQGMSKAEDIGVTMTKR 410
>gi|229605025|ref|YP_002875724.1| hypothetical protein P087_gp56 [Lactococcus phage P087]
gi|227826008|gb|ACP41732.1| hypothetical protein [Lactococcus phage P087]
Length = 578
Score = 71.3 bits (173), Expect = 4e-10, Method: Composition-based stats.
Identities = 71/460 (15%), Positives = 137/460 (29%), Gaps = 87/460 (18%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
G G GK+ +++ L + G + A + L + ++ E+ ++ P +
Sbjct: 105 GTGFGKSFVSSQCNL--VRANRGELITAFAPNRE-LNSVIFKEMVSAVNHSPKLKKVLFE 161
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP-DTFVGHHNTYGMAIINDEASGT 203
+ S A G+ K ++ + + G H++ M DE +
Sbjct: 162 AESKEEA--------LQRGVSQKRFAFPSGGFVDLTIAKNATGVHSSSYM----DEYALL 209
Query: 204 PDVINLGILG----FLTERNANRFWIMTSNPRRLSGKFYEIFNKPL--------DDWK-- 249
G ++ + TSNP ++ + ++ PL DW+
Sbjct: 210 TKEEYNLAEGRAYAYVDKDGKPGKIFKTSNPHIMNFSYDDMIRNPLPPHEAVLWGDWRLN 269
Query: 250 ----------RFQIDTRTVEGIDPSFHEGIIARYGLD--------SDVT------RVEVC 285
Q+D D Y LD S R+
Sbjct: 270 IGEGKFMELVYSQLDDEHKYLKDKFPLNREERDYLLDQAIQQVIWSPFFNDEDNLRILYL 329
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL 345
+F +F ++ P + G D+A G D + L +
Sbjct: 330 SEFGVNTESAFFTTT---PKIDDSPIDWDNSTFYAGNDVAIRGTDACIYALLEYNPNKSY 386
Query: 346 FDWSKTDL------------RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH 393
+ + ++ + IDA+ G + L
Sbjct: 387 SRIVAFNNVKPQLWIDHETPMEMAQNVIRQLKHDNARLLAIDASGVGEGQFNLLTTDDAE 446
Query: 394 ----VYRVLGQKRAV------DLEFCRNRRTELHVKMADWLEFASLINHSG----LIQNL 439
V V A + N+R+EL + ++++ +L S L +
Sbjct: 447 TSCPVVPVRFGDGASKWRKDKNAVRSHNKRSELFLDFKEFIDTDTLRVTSEVWEFLQAEM 506
Query: 440 KSLKSFIVPNTGELAIESK---RVK-GAKSTDYSDGLMYT 475
+++ ++ IE K + + G KSTDY D M
Sbjct: 507 QAVTKMSNDENKKIKIEPKDAIKKRLGGKSTDYLDSSMLA 546
>gi|116625333|ref|YP_827489.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
Ellin6076]
gi|116228495|gb|ABJ87204.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
Ellin6076]
Length = 260
Score = 70.9 bits (172), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/225 (17%), Positives = 72/225 (32%), Gaps = 25/225 (11%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
GK+T+ A + T+ I ++ + Q T + V K + +M+
Sbjct: 58 WGKSTVTAARAVHEAVTKADSLTIAVSPTARQ--TGEF--VRKAEAFAGM---LKMKVKG 110
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ S + R +S ++ DEAS D +
Sbjct: 111 DGSNEMSLAFPNGSRIVGLPGTEATVRGFSA-------------VALLLVDEASRVEDDL 157
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE 267
+ + L W+M S P G FYE + W+R + + E
Sbjct: 158 YMAMRPMLAVSG-GTLWLM-STPWGKRGFFYEAWANGGPTWERVSVKAEDCPRFGAEYLE 215
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
G + R E C +F + + ++IE A + + P
Sbjct: 216 EERRVMGER--IYRQEYCCEFGESSS-AVFDRDLIEAAFSDDFGP 257
>gi|86372240|gb|ABC95184.1| GP17-terminase [Stenotrophomonas phage Smp14]
Length = 536
Score = 70.1 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 48/326 (14%), Positives = 107/326 (32%), Gaps = 48/326 (14%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKTT+ A ++LW + LAN Q + L ++ + WF + +
Sbjct: 92 GKTTVVAAILLWYAIFNEEYRIAILANKGDQSREIL----ARLQLMYEELPWF----MQV 143
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI- 207
+ W + + LG S+ ++ + + G + DE + + +
Sbjct: 144 GVSVW--NKGNIKLGNRSEVFT------AATGGSSIRG---KSVNLMYLDEFAFVENDVD 192
Query: 208 -NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR---TVEGIDP 263
+T I+TS P ++ FY+I+ + + + D
Sbjct: 193 FYTSTYPVVTS-GTKTKVIITSTPNGMN-LFYKIWTDSTNGKNNYVHNEAFWHDHPKRDQ 250
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC------------ 311
++ + + E +F Q D+ + +E+ ++
Sbjct: 251 AWKDEQLRNMSERQ--FEQEFLCKF-QGSSDTLLSPAKLEQLTYQDHIRELGGNRDFKIY 307
Query: 312 --PDPYAPLIMGCDIAEE-GGDNTVV-VLRRGPVIEHLFDWSKTDLR---TTNNKISGLV 364
P A ++ D++E G D +V+ V ++++ + + +
Sbjct: 308 EDPIKDASYVVTVDVSEGIGKDYSVISVFDTTEAPFRQVAMLRSNIIAPLILADLANRIG 367
Query: 365 EKYRPDAIIIDANNTGARTCDYLEML 390
Y +I++ N+ G L
Sbjct: 368 HLYNQAVLIVECNSIGNTVVTALWED 393
>gi|30044056|ref|NP_835653.1| similar to terminase DNA packaging enzyme, large subunit
[Rhodothermus phage RM378]
Length = 508
Score = 70.1 bits (170), Expect = 9e-10, Method: Composition-based stats.
Identities = 55/335 (16%), Positives = 100/335 (29%), Gaps = 54/335 (16%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
G T L M V+ AN E K L + + + L +
Sbjct: 66 GVTWCAVAYALHQMIFNSNYKVLIAANKEATAKNVL--------ERIKFAYEQLPRFLQI 117
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--V 206
W + S + ++ S + +I +EA+ +
Sbjct: 118 KKRTWNKT--YIEFSNYSSARAVSSKSDSGR---------SESITLLIVEEAAFISNMEE 166
Query: 207 INLGILGFLTERNANRFWIMTSNPRRLS-GKFYE----IFNKPLDDWKRFQIDTRTVEGI 261
+ + L N G +YE + ++K F I
Sbjct: 167 LWASVQQTLATGGK-----CIVNSTYNGVGNWYERTIRAAKEGKSEFKYFGIKWSDHPER 221
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP---- 317
D + E L V E+ PQ ++ IP ++I E +P Y
Sbjct: 222 DEKWFEEQKRL--LPPRVFAQEILCI-PQGSGENVIPFHLIREEEFIDPFVVKYGGDYWE 278
Query: 318 -------LIMGCDIA-EEGGDNTVVVLR------RGPVIEHLFDWS--KTDLRTTNNKIS 361
+ D A G D + V ++ + IE + +++ KT L I
Sbjct: 279 WYRKPGYYFISVDPASGRGEDRSAVGVQVLWVDPQTLTIEQVAEFASDKTSLPVMRQVIK 338
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ ++++P I I+ N G ++E +
Sbjct: 339 QIYDEFKPQLIFIETNGIGMGLYQFMEAYTPSIVG 373
>gi|213029404|ref|ZP_03343851.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 282
Score = 69.8 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 8/193 (4%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQ 252
+ +EA + + + + + ++ NP ++ + P +D +
Sbjct: 75 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEDTLIRK 132
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D + G D + I L+ IE A++ +
Sbjct: 133 INYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 192
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKYR 368
P +G D+A+ G D V R G VI +W + +L + + + R
Sbjct: 193 DFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAME-R 251
Query: 369 PDAIIIDANNTGA 381
I+ D+ GA
Sbjct: 252 DADIVYDSIGVGA 264
>gi|331648285|ref|ZP_08349374.1| conserved hypothetical protein [Escherichia coli M605]
gi|331042834|gb|EGI14975.1| conserved hypothetical protein [Escherichia coli M605]
Length = 219
Score = 69.8 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 51/205 (24%)
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
D+A+EG D R G ++E++ +WS +D+ + K+ G E+ + D +
Sbjct: 1 MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDNLEEFRFDEDGL 60
Query: 380 GART------CDYLEMLGYH---------------------VYRVLGQKRAVDLEFCRNR 412
GA + L + V GQ ++ +F N
Sbjct: 61 GAGVRGDARAINELRNVARRPSILATPFRGSGAVFDPDDEAVRGDNGQAARLNKDFFANA 120
Query: 413 RTELHVKMADWL--------EFASLINH------------SGLIQNLKSLKSFIVPNTGE 452
+ + ++ E + LI L S ++ + G+
Sbjct: 121 KAQSWWRLRKLFQNTWRAVAEGMAYNPDEIISISSSMALKDKLIIEL-SQPTYSINGVGK 179
Query: 453 LAIESKRVKGAKSTDYSDGLMYTFA 477
+ I+ K+ G +S + +D +M +A
Sbjct: 180 IVID-KQPDGTRSPNLADSVMINYA 203
>gi|256819733|ref|YP_003141012.1| hypothetical protein Coch_0896 [Capnocytophaga ochracea DSM 7271]
gi|256581316|gb|ACU92451.1| hypothetical protein Coch_0896 [Capnocytophaga ochracea DSM 7271]
Length = 450
Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/295 (14%), Positives = 104/295 (35%), Gaps = 38/295 (12%)
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR---------TVEGIDPSFHE 267
E N ++T+NP + ++ + +K ++ R + + + +
Sbjct: 162 EYNLKGKLLITANPSKNF-----LYKEFYTPYKEGTLNKRRAFIQALPYDNKMLPKEYIQ 216
Query: 268 GIIAR-YGLDSDVTRVEVC-GQFP-QQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
+ G + + + G + D +S + I N + P + DI
Sbjct: 217 NLENTLRGAE----KQRLLNGLWEYDDDPNSLCDYDKILAIFNNDQLPKESTTY-LTADI 271
Query: 325 AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY---RPDAIIIDANNTGA 381
A G D V+ + +G + ++ + + I+ L KY + + I D + G
Sbjct: 272 ARFGSDLCVIGVWQGWELIEVYTLATSATTEIQALINTLRMKYNIPKGNCIA-DEDGVGG 330
Query: 382 RTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQ---- 437
D ++G+ ++ +N +T+ K+A+ + + + + +
Sbjct: 331 GVVDNTGIVGFKNNSTPFEENG-QPTNYKNLQTQCLYKLAERINSNGIYISAEVSERTKE 389
Query: 438 --NLKSLKSFIVPNTG-ELAIESK---RVKGAKSTDYSDGLMY-TFAENPPRSDM 485
+ + G L++ +K + +S DY D L+ + + P+
Sbjct: 390 MIIEEIEQIKSDNKDGQRLSVINKDTVKQAIGRSPDYRDMLLMREYFDLKPKRIF 444
>gi|291334534|gb|ADD94186.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C1220]
gi|291335526|gb|ADD95137.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C491]
gi|291335665|gb|ADD95272.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C846]
Length = 354
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/270 (18%), Positives = 100/270 (37%), Gaps = 38/270 (14%)
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE----RPDTFVGHHNTYGMAIINDEASG 202
L P W L I+ + ST+ +E R + G ++ DEA+
Sbjct: 12 KLVPKVWIRTKNETDLRIELINGSTIELKGTENAMALRGRSLSG--------VVLDEAAF 63
Query: 203 T-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF----NKPLDDWKRFQIDTRT 257
+V I L ++ + + S P + FY+++ + ++W+R+ T
Sbjct: 64 MDAEVWFEVIRPALADKEG--WALFISTPDGTASWFYDLWCYVPDDETNEWQRWSYTTID 121
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
+ E A+ LD+ R E F +++ + ++ +E +++E P
Sbjct: 122 GGNVSKHEVEAARAQ--LDTRTFRQEFEASF--ENLTGLVAISFSDENISQEAKDISIQP 177
Query: 318 LIMGCDIAEEGGD--NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII- 374
L++G D D + + ++ G + + T TT + + +Y D II
Sbjct: 178 LLLGVD---FNVDPMSGICAVKNGETLYVFDEVMLTGGATTWDFAEEVTRRYGVDRRIIA 234
Query: 375 --DANN-----TGARTCDY--LEMLGYHVY 395
D +G D+ L G+ V
Sbjct: 235 CPDPTGGARKTSGVGVTDHAILRRSGFTVQ 264
>gi|326804661|ref|YP_004327532.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase
[Salmonella phage Vi01]
gi|301795311|emb|CBW38029.1| Gp17 terminase subunit for DNA packaging, nuclease and ATPase
[Salmonella phage Vi01]
Length = 736
Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 66/393 (16%), Positives = 121/393 (30%), Gaps = 66/393 (16%)
Query: 91 TTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHP 150
TT+ A +LW + LAN E Q L + K +
Sbjct: 269 TTVVAAFLLWYAMFHSDKEIAVLANKEKQAIEIL-DRIRK----------------AYQD 311
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYS-EERPDTFVGHHNTYGMAIINDEASGTPDV--I 207
P++ G + + Y+ D+ G + DE + +
Sbjct: 312 LPFFLQQGCEKFGSTLIEFENGSKIYAYATSSDSIRGR---SVSLLYVDEVAFIENDFEF 368
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD---WKRFQIDT---RTVEGI 261
+ + +R I+TS P+ G FY+I K + F + V
Sbjct: 369 WESTFPAIASADTSR-CILTSTPKGQRGLFYDIVTKADPRHPQYNDFHLTEVPWYKVPAY 427
Query: 262 --DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---REP-----C 311
DP + AR G E +F + + S IP +++ + REP
Sbjct: 428 TKDPDWETKQRARLG--DARFDQEFGIKF-RGSVGSLIPAKCLDKMTSKLYREPNEFTKI 484
Query: 312 PDPYAPLIMGCDIAEEG----GDNTVV-VLRRGPVIEHLFDWSKTDL---RTTNNKISGL 363
Y P + IA+ G GD +V+ +L + + + I+ +
Sbjct: 485 YKEYDPQRIYFGIADTGKGVEGDYSVLTILDITEYPHVIAAKYRNNTIPPMMYAYTIADM 544
Query: 364 VEKYRPDAIIIDA-NNTGARTCDYLEMLGYHVYRVLG-----------QKRAVDLEFCRN 411
+Y ++++ N+ G + L + + R + N
Sbjct: 545 CTEYGECPVLVETNNDVGGQVITILYQEIEYPEIIFTSTDNKGTGKRIGGRKPEPGINTN 604
Query: 412 R--RTELHVKMADWLE-FASLINHSGLIQNLKS 441
R R+ + +E +I I L +
Sbjct: 605 RKVRSIGCANLKALIEKEMLVIEDQDTIDELST 637
>gi|282599341|ref|YP_003358653.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage
phiSboM-AG3]
gi|226973647|gb|ACO94400.1| Gp17 terminase DNA packaging enzyme large subunit [Shigella phage
phiSboM-AG3]
Length = 736
Score = 68.6 bits (166), Expect = 3e-09, Method: Composition-based stats.
Identities = 61/393 (15%), Positives = 124/393 (31%), Gaps = 66/393 (16%)
Query: 91 TTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHP 150
TT+ A +LW + LAN E Q L + K +
Sbjct: 269 TTVVAAFLLWYAMFHSDKEIAVLANKEKQAIEIL-DRIRK----------------AYQD 311
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYS-EERPDTFVGHHNTYGMAIINDEASGTPDV--I 207
P++ G + + Y+ D+ G + DE + +
Sbjct: 312 LPFFLQQGCEKFGSTLIEFENGSKIYAYATSSDSIRGR---SVSLLYVDEVAFIENDFEF 368
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD---WKRFQIDTRTVEGI--- 261
+ + +R I+TS P+ G FY+I K + + F++ +
Sbjct: 369 WESTFPAIASADTSR-CILTSTPKGQRGLFYDIVTKANPEHPQYNDFKLTEVPWYRVPTY 427
Query: 262 --DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--------EPC 311
DP++ A+ G E +F + + S IP +++ ++
Sbjct: 428 TKDPNWESKQRAKLG--DARFDQEFGIKF-RGSVGSLIPAKCLDKMTSKLYQEPNEFTKI 484
Query: 312 PDPYAPLIMGCDIAEEG----GDNTVV-VLRRGPVIEHLFDWSKTDL---RTTNNKISGL 363
Y P + IA+ G GD +V+ +L + + + I+ +
Sbjct: 485 YHDYDPKRIYMGIADTGKGVEGDYSVLTILDITDYPHKIAAKYRNNTIPPMMYAYTIADM 544
Query: 364 VEKYRPDAIIIDA-NNTGARTCDYLEMLGYHVYRVLG-----------QKRAVDLEFCRN 411
EKY ++++ N+ G + L + + R + N
Sbjct: 545 GEKYGTCPMLVETNNDVGGQVITILYQEIEYPEIIFTTTDAKGTGKRIGGRRPEPGINTN 604
Query: 412 R--RTELHVKMADWLE-FASLINHSGLIQNLKS 441
+ R+ + +E +++ I L +
Sbjct: 605 KKVRSNGCANLKALIEREMLVVDDQDTIDELST 637
>gi|291334627|gb|ADD94276.1| hypothetical protein Syncc9605_0456 [uncultured phage
MedDCM-OCT-S04-C231]
Length = 320
Score = 68.2 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/218 (18%), Positives = 83/218 (38%), Gaps = 26/218 (11%)
Query: 195 IINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF----NKPLDDWK 249
++ DEA+ +V I L ++ + + S P + FY+++ +W+
Sbjct: 56 VVLDEAAFMDAEVWFEVIRPALADKEG--WALFISTPDGTASWFYDLWCYVPEDETGEWQ 113
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
R+ T + E A+ LD+ R E F +++ + ++ +E +++E
Sbjct: 114 RWSYTTIEGGNVSKHEVEAARAQ--LDNRTFRQEFEASF--ENLTGLVAISFSDENISQE 169
Query: 310 PCPDPYAPLIMGCDIAEEGGD--NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
PL++G D D + + ++ G + + T TT + + +Y
Sbjct: 170 AKDISIQPLLLGVD---FNVDPMSGICAVKNGETLYVFDEIMLTGGATTWDFAEEVTRRY 226
Query: 368 RPDAIII---DANN-----TGARTCDY--LEMLGYHVY 395
D +I D +G D+ L G+ V
Sbjct: 227 GVDRRVIACPDPTGGARKTSGVGVTDHAILRRSGFTVQ 264
>gi|297566322|ref|YP_003685294.1| hypothetical protein Mesil_1911 [Meiothermus silvanus DSM 9946]
gi|296850771|gb|ADH63786.1| protein of unknown function DUF264 [Meiothermus silvanus DSM 9946]
Length = 427
Score = 67.8 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 68/386 (17%), Positives = 134/386 (34%), Gaps = 44/386 (11%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
+GK+ + + P + L+ E Q SK L+ +H +Q ++
Sbjct: 32 VGKSFAASLEAVLDCVAHPRSLWVFLSRGERQ---------SKELAEKAQRHLEAIQVVA 82
Query: 148 -LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD- 205
++ P+ ++ + + + PDT G+ ++ DE + D
Sbjct: 83 EMYDEPFDAESTQTVIRLPNGSRIISLPA----NPDTARGYSGN----VLLDEFALHKDS 134
Query: 206 -VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP--LDDWKRFQIDTRTVEGID 262
I + +T R+ + S P+ GKFYEI+ D W R ++D
Sbjct: 135 REIWGALYPTIT-RSKRYRLRVLSTPKGQQGKFYEIWQPEPGGDLWSRHRVDIYDAVQQG 193
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP--YAPLIM 320
+ + D + + E +F + +++P +I + + D L +
Sbjct: 194 LEVDPEELRKGLKDPVLWQQEYLLEFVDEAS-AWLPYELITSCESSQARTDGALEGDLYL 252
Query: 321 GCDIAEEGGDNTVV--VLRRGPVI--EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
G DI D +V+ R G V+ + +T T + L+ + R IDA
Sbjct: 253 GMDIGRH-RDLSVIWVAERVGDVLWTRRVIWLERTPFATQREVLYSLLPQVRRAC--IDA 309
Query: 377 NNTGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL-INHSG 434
+ G + + + G V V+ + + L V + E + I
Sbjct: 310 SGLGMQLAEEAQSRFGSRVEPVMFTRAVKED---------LAVTLRRKFEDRLIRIPPDD 360
Query: 435 LIQNLKSLKSFIVPNTGELAIESKRV 460
I+ I + G + ++ R
Sbjct: 361 RIRESLHAVRRITTSAGHIRFDADRD 386
>gi|300775654|ref|ZP_07085515.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
gi|300505681|gb|EFK36818.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
Length = 475
Score = 67.4 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 35/284 (12%)
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLD------DWKRFQIDTRTVEGIDPSFHEGII 270
E +T NP++ Y F KP+ K Q + I + E +
Sbjct: 179 EYGLKPKIFVTCNPKKN--WMYSYFYKPMKEGLLKLKQKFIQAFVQENPFITTDYIEQLE 236
Query: 271 ARYGLDSDVTRVEVC-GQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLIMGCDIAEE 327
+ R + G + + D+ L I + L+ + + + D+A
Sbjct: 237 ST---TDKAKRERLLKGNW--EYDDNPYKLTIYDRILDLWKNDHIEKKGRKYITADVARF 291
Query: 328 GGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI--SGLVEKYRPDAIIIDANNTGARTCD 385
G D V + + + ++ + I + K I DA+ G D
Sbjct: 292 GSDLATVGVWEDWDLIEVHEFEISKTTEIQACIQAMRIKHKIPKHNCIADADGVGGGVVD 351
Query: 386 YLEMLGYHVYRVLGQ---KRAVDLEFCRNRRTELHVKMADWLEFASLINHSG-------- 434
L+++G+ + ++ + +N +T+L V +A+ + + +N S
Sbjct: 352 NLDIIGFVNNAKPFEENTGQSKNAPKYKNMQTQLLVYLAEKIINQNKMNISADISEKQKE 411
Query: 435 -LIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ + L +++ +P+ + + K + +S DY D ++
Sbjct: 412 YIKEELDTIE--RIPDVDIVTLVDKTQIKQNIGRSPDYRDMILM 453
>gi|329954246|ref|ZP_08295340.1| phage terminase, large subunit, PBSX family [Bacteroides clarus YIT
12056]
gi|328527952|gb|EGF54938.1| phage terminase, large subunit, PBSX family [Bacteroides clarus YIT
12056]
Length = 438
Score = 67.1 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 52/319 (16%), Positives = 109/319 (34%), Gaps = 45/319 (14%)
Query: 196 INDEASGTPDVINLGILG----FLTE-RNANRFWIMTSNPRRLSGKFYEIFNKP------ 244
+EA + + L + N ++T NP++ Y+ F KP
Sbjct: 126 WIEEAGQVNRLAFEVLQTRIGRHLNDVYNVPGKILITCNPKKN--WLYDKFYKPWKEHKL 183
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDIDSFIPLNIIE 303
D + Q + + + + VT+ + G + + P + +
Sbjct: 184 KDGYAFVQALVQDNPFATEDYINTLKNT---NDKVTKERLYFGNWEYDND----PAVLCD 236
Query: 304 EALNREPCPDPY-APLIMGC---DIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
+ + + P+ + D+A +G D V G V D + ++
Sbjct: 237 YDAICDLFVNEHVQPVGLSTGSSDLAMKGRDRFVSGHWIGNVCYIRLDQEYSTGKSIEAD 296
Query: 360 ISGLVEKY--RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ ++ ++ +I+D++ G YLE + G R ++ E N ++E
Sbjct: 297 LKNMMIQWSIPRSMMIVDSDGLG----SYLESYLNGIKEFHGGNRPINPE-FDNLKSECA 351
Query: 418 VKMADWLEFASL------INHSGLIQNLKSLKSFIVP----NTGELAIESKRVKGAKSTD 467
K+A+ + + +I+ L LK + G ++ E + S D
Sbjct: 352 FKLAELINNRQIRIICTEAQRERIIEELGVLKQDHIDADTRKKGIISKEKMKEILGHSPD 411
Query: 468 YSDGLMYT-FA--ENPPRS 483
Y D L+ F + P+
Sbjct: 412 YLDMLIMAMFFRIKPIPKR 430
>gi|167623253|ref|YP_001673547.1| hypothetical protein Shal_1320 [Shewanella halifaxensis HAW-EB4]
gi|167353275|gb|ABZ75888.1| protein of unknown function DUF264 [Shewanella halifaxensis
HAW-EB4]
Length = 617
Score = 67.1 bits (162), Expect = 7e-09, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 87/249 (34%), Gaps = 34/249 (13%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP-------- 317
E + Y + D + F D DS + +E+ + + P
Sbjct: 380 IEELRDEY--NDDDFKNLFMCIFVD-DADSVFKFSDLEKCMVESARWQDHKPKEQRPFGN 436
Query: 318 --LIMGCDIAEEGGDNTVVVL----RRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRP 369
+ +G D + + T+VV+ ++G L W + ++I + +YR
Sbjct: 437 REVWLGYDPSRTRDNATLVVIAPGEKKGEKFRVLEKHYWRGLNFSHHVSEIQKVYARYRV 496
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
I +D GA D + L + A + + + +T L +KM D +E +
Sbjct: 497 TYIGVDTTGIGAGVFDSISTL--------FPREATAIHYSVSSKTRLVLKMIDVVESGRI 548
Query: 430 I---NHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
+H + + S++ G + ++ R ++D + + A ++
Sbjct: 549 EWDASHKDIAMSCLSIRKTTTDTGGAITFKASRDNVT---GHAD-VFFAIAHAVINEPLN 604
Query: 487 FGRCPSYQY 495
F + +
Sbjct: 605 FAHKRTSSW 613
>gi|291337121|gb|ADD96636.1| hypothetical protein Syncc9605_0456 [uncultured organism
MedDCM-OCT-S12-C92]
Length = 354
Score = 66.7 bits (161), Expect = 9e-09, Method: Composition-based stats.
Identities = 50/270 (18%), Positives = 99/270 (36%), Gaps = 38/270 (14%)
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE----RPDTFVGHHNTYGMAIINDEASG 202
L P W L I+ + ST+ +E R + G ++ DEA+
Sbjct: 12 KLVPKVWIRTKNETDLRIELINGSTIELKGTENAMALRGRSLSG--------VVLDEAAF 63
Query: 203 T-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF----NKPLDDWKRFQIDTRT 257
+V I L ++ + + S P + FY+++ + ++W+R+ T
Sbjct: 64 MDAEVWFEVIRPALADKEG--WALFISTPDGTASWFYDLWCYVPDDETNEWQRWSYTTID 121
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
+ E A+ LD+ R E F +++ + ++ ++ ++ E P
Sbjct: 122 GGNVSKHEVEAARAQ--LDTRTFRQEFEASF--ENLTGLVAISFSDDNISTEAKDISIQP 177
Query: 318 LIMGCDIAEEGGD--NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII- 374
L++G D D + + ++ G + + T TT + + +Y D II
Sbjct: 178 LLLGVD---FNVDPMSGICAVKNGETLYVFDEVMLTGGATTWDFAEEVTRRYGVDRRIIA 234
Query: 375 --DANN-----TGARTCDY--LEMLGYHVY 395
D +G D+ L G+ V
Sbjct: 235 CPDPTGGARKTSGVGVTDHAILRRSGFTVQ 264
>gi|326784094|ref|YP_004324487.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn1]
gi|310004826|gb|ADO99217.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn1]
Length = 550
Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/323 (15%), Positives = 103/323 (31%), Gaps = 47/323 (14%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
GK+T +L + ++V LAN + + L ++ + N + Q +
Sbjct: 84 TGKSTTVVSYLLHYLIFNDSVNVGILANKASTARDLL----ARLATAYENLPKWIQQGVV 139
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ W + G ST + I DE + P+ I
Sbjct: 140 V----WNKGNIELENGSKILAASTSASAVRGMSFN-----------IIFLDEFAFVPNHI 184
Query: 208 ----NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVEG 260
+ +T + I+ S P+ ++ FY+++ +D+ ++ V G
Sbjct: 185 ADSFFASVYPTITS-GKSTKVIIISTPQGMN-HFYKMWQDAVNGRNDYTYHEVHWSQVPG 242
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--------- 311
D + E I E +F +D+ I + ++ EP
Sbjct: 243 RDAKWKEETIKNTSQRQ--FTQEFECEFL-GSVDTLISASKLKALAFDEPITRNKGLDIY 299
Query: 312 --PDPYAPLIMGCDIAE--EGGDNTVVVLRRGPVIEHLFDWSKTD---LRTTNNKISGLV 364
P ++ D++ G + +V V + + + N I+ +
Sbjct: 300 EKPKDKNEYLLTVDVSRGIGGDYSAFIVYDITTVPYKIVGKYRNNEIKPMLFPNVINDVA 359
Query: 365 EKYRPDAIIIDANNTGARTCDYL 387
Y ++ + N+ G + L
Sbjct: 360 RAYNNAWVLCEVNDVGDQVASIL 382
>gi|58532911|ref|YP_195134.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-PM2]
gi|58331378|emb|CAF34164.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-PM2]
Length = 548
Score = 66.3 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/323 (14%), Positives = 104/323 (32%), Gaps = 47/323 (14%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
GK+T +L + +++ LAN + + L ++ + N + Q +
Sbjct: 84 TGKSTTVVSYLLHYLIFNDNVNIGILANKASTARDLL----ARLATAYENLPKWIQQGVV 139
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ W + G ST + I DE + P+ I
Sbjct: 140 V----WNKGNIELENGSKILAASTSASAVRGMSFN-----------IIFLDEFAFVPNHI 184
Query: 208 ----NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF---NKPLDDWKRFQIDTRTVEG 260
+ +T + I+ S P+ ++ FY+++ + + ++ V G
Sbjct: 185 ADSFFASVYPTITS-GKSTKVIIISTPQGMN-HFYKMWVDATNGRNGYTFHEVHWSQVPG 242
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--------- 311
D + E I E +F +D+ I + ++ + +P
Sbjct: 243 RDEKWKEETIKNTSERQ--FTQEFECEFL-GSVDTLIAASKLKALVFNDPIKRNKGLDIY 299
Query: 312 --PDPYAPLIMGCDIAE--EGGDNTVVVLRRGPVIEHLFDWSKTD---LRTTNNKISGLV 364
P + +M D++ G + ++ V + + + N I+ L
Sbjct: 300 EEPKEKSEYLMTVDVSRGIGGDYSAFIIFDITTVPYKVVGKYRNNEIKPMLFPNIINDLA 359
Query: 365 EKYRPDAIIIDANNTGARTCDYL 387
Y ++ + N+ G + L
Sbjct: 360 RSYNNAWVLCEVNDIGDQVASIL 382
>gi|319775358|ref|YP_004137846.1| Terminase, ATPase subunit [Haemophilus influenzae F3047]
gi|317449949|emb|CBY86161.1| Terminase, ATPase subunit [Haemophilus influenzae F3047]
Length = 603
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/375 (14%), Positives = 118/375 (31%), Gaps = 70/375 (18%)
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
K + +S ++ A +DV I + + + T+ T +H
Sbjct: 210 ASKKQALQFRSYIVNYAKQTADVDLKGETIKLPNGAEL--TFLGTNSATAQSYHGN---- 263
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDD 247
+ DE P DV+ G ++ + S P ++ Y + FN+
Sbjct: 264 LYFDEVFWVPKFDVMRKVASGMAAQKMYRQT--YFSTPTTIAHPAYAFFSGKAFNRNRAK 321
Query: 248 WKRFQIDT------------------------RTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ +ID G + + +IA +
Sbjct: 322 SEKIEIDISHENLKSGKLCADRQWKQIVSIYDAMEGGCNLFNIDDLIAENSKEE--FEQL 379
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV 333
QF + +F ++ ++ Y P + +G D A G +
Sbjct: 380 FLCQFADDNSSAFKFSDLQLCQVDSLEEWHDYKPFYQRPFGNREVWLGYDPAFTGDRAAL 439
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
V++ R + H + D T ++I + Y I+ID G+ +
Sbjct: 440 VIVAPPKVERGDYRVLHKQTFHGMDYETQASRIKQFCDDYNVTRIVIDKTGMGSGVYQEV 499
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL---INHSGLIQNLKSLKS 444
V + E+ + + E+ +K + ++ L + ++ + ++K
Sbjct: 500 RKFYPMVQGL---------EYNADLKNEMVLKTQNLIQKRRLKFDSGDNDIVSSFMTVKK 550
Query: 445 FIVPNTGELAIESKR 459
+ TG++ S R
Sbjct: 551 -RITGTGKITYVSDR 564
>gi|320162476|ref|YP_004175701.1| hypothetical protein ANT_30750 [Anaerolinea thermophila UNI-1]
gi|319996330|dbj|BAJ65101.1| hypothetical protein ANT_30750 [Anaerolinea thermophila UNI-1]
Length = 506
Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 57/329 (17%), Positives = 94/329 (28%), Gaps = 43/329 (13%)
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSL--SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
L + AE+ K L + M+ L L+ P G + S
Sbjct: 72 LFSGTSAEMVKASPTLRPQSLTAMRRLERVLNANPLTRGRWRRESGNTFRLGQARIHFLS 131
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT--ERNANRFWIMTSNPRRLSG 235
+ VG T + + DEA L +T FW L G
Sbjct: 132 AAPGASIVG--ATASLLLEVDEAQAVSIEKFDTELAPMTASTGAVRVFWGTAWTASTLLG 189
Query: 236 K---FYEIFNKPLDDWKRFQIDTRTVEGIDPSFH---EGIIARYGLDSDVTRVEVCGQFP 289
+ + + F++ V P + E I + G + R + +
Sbjct: 190 RELRLAQAEQARDGVRRVFRLTAAEVIADHPRYARTVERAIQQLGRNHPAVRTQYFSEEV 249
Query: 290 QQDIDSFIPLNIIEEALNREPCPDP---------------YAPLIMGC--DIAEEGGDNT 332
+ P + P D AP+ + D A D++
Sbjct: 250 DAA-GTLFPEERLALLRGTHPWQDAPLPGRTYAFLLDVGGTAPVQLPLMDDYAGNRRDSS 308
Query: 333 VVVLRR-----------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA 381
+V+ HL W+ ++ L ++ P I+IDA GA
Sbjct: 309 ALVIVEVEPPQDGRPAPRYRAVHLCQWTGVSQTRLFEQVLALARQWSPRRIVIDATGVGA 368
Query: 382 RTCDYLEML--GYHVYRVLGQKRAVDLEF 408
D+L+ G V V DL +
Sbjct: 369 GLADFLDRALPGRVVRFVFSSASKSDLGY 397
>gi|163758712|ref|ZP_02165799.1| prophage MuMc02, terminase, ATPase subunit, putative [Hoeflea
phototrophica DFL-43]
gi|162284002|gb|EDQ34286.1| prophage MuMc02, terminase, ATPase subunit, putative [Hoeflea
phototrophica DFL-43]
Length = 460
Score = 64.4 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/304 (16%), Positives = 86/304 (28%), Gaps = 32/304 (10%)
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH 188
+K L H ++ Q D+ H S T PDT G
Sbjct: 79 AKAYDLAIEAHEYDWQGQEGSYRAMEVDLPHGSK-----------ITALPANPDTARGFS 127
Query: 189 NTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
+ DE + D I + ++ A +TS P KFYE+ D
Sbjct: 128 AN----VFLDEFAFHKDSGAIWKALFPVIS---AGWKLRITSTPNGKGNKFYELMTAEGD 180
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID----SFIPLNII 302
W + ++D + D D E ++ + I
Sbjct: 181 RWSKHEVDIYRAVADGLPRDIEELREGLADEDAWAQEYELKWLDEASAWLSYELISSVED 240
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEHLFDWSKTDLRTTNN 358
E A +P P +G DI D V+ + + + + +
Sbjct: 241 ERA--GDPYLYQGGPCYVGRDIGRRN-DLHVIWVWELVGDVLWERERIEQKRATFASMDA 297
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEML-GYHVYRVLGQKRAVDLEFCRNRRTELH 417
++E+YR ID G + + + G + VL + +
Sbjct: 298 AFDDVMERYRVVRACIDQTGMGEKVVEDAQTRHGSRIEGVLFTGPNKLVMATAGKEAFED 357
Query: 418 VKMA 421
++
Sbjct: 358 RRVR 361
>gi|78212008|ref|YP_380787.1| hypothetical protein Syncc9605_0456 [Synechococcus sp. CC9605]
gi|78196467|gb|ABB34232.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 414
Score = 64.4 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/254 (19%), Positives = 88/254 (34%), Gaps = 39/254 (15%)
Query: 82 ISAGRGIGKTTLN-AWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+++GR GKT + WL+ + T G + LA + Q K W ++
Sbjct: 25 VNSGRRFGKTRMALTWLLEGALLT-SGSRMWFLAPTRVQAKQIAWRDLK----------- 72
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ P W S V +L I+ ++ S + + + D+ G DE
Sbjct: 73 ------EMVPGSWASQVRESTLTIELRNGSHI-QLAGADYADSLRGQRADR---FAIDEY 122
Query: 201 SGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD--WKRFQIDTR 256
D + L + + + I +S P E++ + W R+ +
Sbjct: 123 CYIRDLQEMWQAALLPMLGTSDDGSVIFSSTPAGGGTFSAELWERAETAEGWARWNFPSV 182
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC---PD 313
+ P + E AR +D + R E G L + A N++ D
Sbjct: 183 AGGWVKPEYVEQ--ARQTMDPSLWRQEFFGSIES-------LLGAVYPAFNQQNISDTVD 233
Query: 314 PYAPLIMGCDIAEE 327
PL++GCD
Sbjct: 234 NGGPLLVGCDFNRS 247
>gi|319762771|ref|YP_004126708.1| prophage mumc02, terminase, atpase subunit, putative
[Alicycliphilus denitrificans BC]
gi|317117332|gb|ADU99820.1| prophage MuMc02, terminase, ATPase subunit, putative
[Alicycliphilus denitrificans BC]
Length = 454
Score = 64.0 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/241 (19%), Positives = 77/241 (31%), Gaps = 21/241 (8%)
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRR 232
T PDT G ++ DE + D I + +++ S P
Sbjct: 113 TALPANPDTARGFSAN----VLLDEFAFHQDSRAIWKALFPVISKPGLKLRV--ISTPNG 166
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTR-TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
KFY++ D W R D V P E + G D D+ E ++ +
Sbjct: 167 KGNKFYDLMTGADDGWSRHTTDIYQAVADGLPRNIEELRKGAG-DDDLWAQEFELKWLDE 225
Query: 292 DIDSFIPLNIIEEA---LNREPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEH 344
+++P +I +P P +G DIA D V+ + +
Sbjct: 226 AS-AWLPFELITACEHEAAGKPEHYQGGPCFVGVDIASRN-DLFVIWVFELVGDVLWVRE 283
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG-ARTCDYLEMLGYH-VYRVLGQKR 402
+ + + + + G+ +YR +D G D G V VL
Sbjct: 284 IIERRRITFAEQDMLLDGVFRRYRVIRACMDQTGMGEKPVEDAQRRHGSSRVQGVLFTSS 343
Query: 403 A 403
A
Sbjct: 344 A 344
>gi|146277344|ref|YP_001167503.1| hypothetical protein Rsph17025_1297 [Rhodobacter sphaeroides ATCC
17025]
gi|146278140|ref|YP_001168299.1| hypothetical protein Rsph17025_2103 [Rhodobacter sphaeroides ATCC
17025]
gi|145555585|gb|ABP70198.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC
17025]
gi|145556381|gb|ABP70994.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC
17025]
Length = 476
Score = 64.0 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 69/239 (28%), Gaps = 21/239 (8%)
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRR 232
T PDT G +I DE + I + +++ + + S P
Sbjct: 133 TALPANPDTARGFSAN----VILDEFAFHAKSREIWAALFPVISKG--RQKLRVISTPNG 186
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
KFYE+ W R +D ++ D D E ++ +
Sbjct: 187 KGNKFYELMTAEGSVWSRHVVDIYEAVRQGLDRDVDMLRAGMADEDAWAQEYELKWLDEA 246
Query: 293 ----IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEH 344
I E L +P P +G DIA D V+ +
Sbjct: 247 SAWLDYDLISS--CESELAGKPEGYQGGPCFVGVDIAARN-DLFVIWVMELVGDVLWTRE 303
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG-ARTCDYLEMLG-YHVYRVLGQK 401
+ + + + ++ +YR + +D G D G V VL
Sbjct: 304 IIARRRISFAEQDALLDDVMRRYRVIRVQMDQTGMGEKPVEDAKRRHGQLRVEGVLFSA 362
>gi|171914351|ref|ZP_02929821.1| hypothetical protein VspiD_24270 [Verrucomicrobium spinosum DSM
4136]
Length = 450
Score = 64.0 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 61/349 (17%), Positives = 102/349 (29%), Gaps = 59/349 (16%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQ-LKTTLWAEVSKWLSLLPNKHWFEMQSL 146
GK +A ++ R + + A SE Q L+T L W E L
Sbjct: 31 TGKDFSSAAEIVRDCKLRDKTTWMIAAPSERQSLET-----------LAKCSEWSEAFDL 79
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCR-TYSEERPDTFVGHHNTYGM---AIINDEASG 202
+ D L ++ R RPDT G M A D
Sbjct: 80 ASEGIREERDGPEALLKQGEIKFANGSRVIAVPGRPDTVRGFSANVLMTEFAFFED---- 135
Query: 203 TPDVINLGILGFLTE--RNANRFWIMTSNPRRLSGKFYEIFNKP---LDDWKRFQIDTRT 257
PD IL +T R + + + P K ++++ K W + ++
Sbjct: 136 -PDATWRAILPSITNPLRGGEKKVRLITTPNGQGNKAHDLWTKENSTKHKWSKHKVTIHD 194
Query: 258 VE----GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD----IDSFIPLNIIEEALNRE 309
+DP ++ D + E +F I EA +
Sbjct: 195 AVAAGLPVDPEELRAMLD----DPEGWAQEYECEFLDAAGVLLSYELIGSCEAPEATTTQ 250
Query: 310 P----CPDPYAPLIMGCDIAEEGGDNTVV--VLRRGP--VIEHLFDWSKTDLRTTNNKIS 361
P P PL G D A + D +V+ + GP V + + +T ++
Sbjct: 251 PDAFWAARPQFPLYAGWDFARK-KDLSVLWTAQKIGPLLVTKEVLVMRG---MSTPKQVE 306
Query: 362 GLVEKYRPDA-IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ + + + +D G D L + D
Sbjct: 307 LVSHRLKNITRLCLDYTGAGVGAGDLLVE--------KFGEWNFDKHQF 347
>gi|227500282|ref|ZP_03930349.1| terminase [Anaerococcus tetradius ATCC 35098]
gi|227217568|gb|EEI82880.1| terminase [Anaerococcus tetradius ATCC 35098]
Length = 466
Score = 64.0 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 55/364 (15%), Positives = 122/364 (33%), Gaps = 51/364 (14%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
+P WQ + ++ + A + + + + GKT + LW + G +
Sbjct: 35 SPYPWQEKLIKDIFAVNDDGLWTHSKFGYAVPRRN----GKTEIVYMAELWFLM--DGKN 88
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+I A+ + + + ++ K+L + + +S+ +++ +
Sbjct: 89 IIHTAHRISTSHS-SFKKLKKYLEKMGLVDKVDFKSIKAK----GQEMIELIKTGGVIQF 143
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
T RT + + F ++ DEA + + +T+ + N +M
Sbjct: 144 RT--RTETGGLGEGFD--------LLVIDEAQEYTEGQESALKYTVTDSD-NPMILMCGT 192
Query: 230 P------RRLSGKFYE---IFNKPLDDWKRFQIDTRTVE-------GIDPS-----FHEG 268
P + K+ + K + W + + T +PS
Sbjct: 193 PPTLVSGGTVFSKYRDLILSGGKNHNGWAEWSVSEMTNPYDIDAWYKTNPSMGYKLRERA 252
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEE 327
+ G D ++ G + + + S I L+ L P L +G +
Sbjct: 253 VEEEIGPDETDFNIQRLGYWVKYNQKSVISKLDWDR--LKLTRLPSLVGKLHVGIKYGND 310
Query: 328 GGDNTVVVLRRGPVIEHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
G + + + + + +R N+ I ++K +P +++ID GA D
Sbjct: 311 GRNVALSIAVKTLSNRIFIESIDCQSIRNGNDWIVDFLKKTKPISVVID----GASRQDI 366
Query: 387 LEML 390
LE
Sbjct: 367 LEEQ 370
>gi|326782381|ref|YP_004322781.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-ShM2]
gi|310003329|gb|ADO97726.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-ShM2]
Length = 362
Score = 63.6 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 46/287 (16%), Positives = 92/287 (32%), Gaps = 44/287 (15%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GK+T+ +LW + ++V LAN + L + N + Q +
Sbjct: 85 GKSTIVTSYLLWYVIFNDNVNVAILANKAATSREML----QRLQRSYENLPKWLQQGIVQ 140
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP---- 204
W L G + S R +F I DE + P
Sbjct: 141 ----WNRGSLELENGSKI---MAASTSSSAVRGMSFN--------VIFLDEFAFVPNHIA 185
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVEGI 261
D + ++ + I+ S P ++ FY++++ + +++ ++ V G
Sbjct: 186 DEFFSSVYPTISS-GKSTKVIIISTPHGMN-MFYKLWHDSERKKNEYISTEVHWSEVPGR 243
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC---------- 311
D + IA +VE +F +D+ I + + + +P
Sbjct: 244 DAKWKAQTIANTSEQQ--FKVEFECEFL-GSVDTLISPSKLRTMVYNDPLVQNKGLSIYE 300
Query: 312 -PDPYAPLIMGCDIAEE--GGDNTVVVLRRGPVIEHLFDWSKTDLRT 355
++ D+A G + VV+ + L K +
Sbjct: 301 HVQKDHNYVITVDVARGVSGDFSAFVVIDTTTIPYKLVAKYKNNTIK 347
>gi|171915351|ref|ZP_02930821.1| hypothetical protein VspiD_29290 [Verrucomicrobium spinosum DSM
4136]
Length = 451
Score = 63.6 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 61/348 (17%), Positives = 104/348 (29%), Gaps = 57/348 (16%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQ-LKTTLWAEVSKWLSLLPNKHWFEMQSL 146
GK +A ++ R + + A SE Q L+T L W E L
Sbjct: 32 TGKDFSSAAEIVRDCKLRDKTTWMIAAPSERQSLET-----------LAKCGEWSEAFDL 80
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCR-TYSEERPDTFVGHHNTYGM---AIINDEASG 202
+ D L ++ R RPDT G M A D
Sbjct: 81 ASEGIREERDGPEALLKQGEIKFANGSRVIAVPGRPDTVRGFSANVLMTEFAFFED---- 136
Query: 203 TPDVINLGILGFLTE--RNANRFWIMTSNPRRLSGKFYEIFNKP---LDDWKRFQIDTRT 257
PD IL +T R + + + P K ++++ K W + ++
Sbjct: 137 -PDATWRAILPSITNPLRGGEKKVRLITTPNGQGNKAHDLWTKENSTKHKWSKHKVTIHD 195
Query: 258 VE----GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEALNREP 310
+DP ++ D + E +F +P +I E A
Sbjct: 196 AVAAGLPVDPEELRAMLD----DPEGWAQEYECEFLD-SAGVLLPYELIATCEAAEATTT 250
Query: 311 CPDPYA------PLIMGCDIAEEGGDNTVV--VLRRGPVIEHLFDWSKTDLRTTNNKISG 362
D + PL G D A + D +V+ + GP I+ + +T ++
Sbjct: 251 QADAFWNARQQFPLYAGWDFARK-KDLSVLWTAQKVGP-IKVTKEVLIMRGMSTPAQVEL 308
Query: 363 LVEKYRPDA-IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ + + + +D G D L + D
Sbjct: 309 VSHRLKHITRLCLDYTGAGVGAGDLLVE--------KFGEWNFDKHQF 348
>gi|68250195|ref|YP_249307.1| terminase, ATPase subunit [Haemophilus influenzae 86-028NP]
gi|68058394|gb|AAX88647.1| terminase, ATPase subunit [Haemophilus influenzae 86-028NP]
Length = 593
Score = 63.2 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 54/375 (14%), Positives = 116/375 (30%), Gaps = 70/375 (18%)
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
K + +S ++ A +DV I + + + + T +H
Sbjct: 200 ASKKQALQFRSYIVNYAKQTADVDLKGETIKLPNGAEL--IFLGTNSATAQSYHGN---- 253
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDD 247
+ DE P DV+ G ++ + S P ++ Y + FN+
Sbjct: 254 LYFDEVFWVPKFDVMRKVASGMAAQKMYRQT--YFSTPTTIAHPAYAFFSGKAFNRNRAK 311
Query: 248 WKRFQIDT------------------------RTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ +ID G + + +IA +
Sbjct: 312 SEKIEIDISHENLKSGKLCADRQWKQIVSIYDAMESGCNLFNIDDLIAENSKEE--FEQL 369
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV 333
QF + +F ++ ++ Y P + +G D A G +
Sbjct: 370 FLCQFADDNSSAFKFSDLQLCQVDSLEEWHDYKPFYQRPFGNREVWLGYDPAFTGDRAAL 429
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
V++ + H + D T ++I + Y I+ID G+ +
Sbjct: 430 VIVAPPKVEGGDYRVLHKQTFHGMDYETQASRIKQFCDDYNVTRIVIDKTGMGSGVYQEV 489
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL---INHSGLIQNLKSLKS 444
A LE+ + + E+ +K + ++ L + ++ + ++K
Sbjct: 490 R---------KFYPMAQGLEYNADLKNEMVLKTQNLIQKRRLKFDSGDNDIVSSFMTVKK 540
Query: 445 FIVPNTGELAIESKR 459
+ TG++ S R
Sbjct: 541 -RITGTGKITYVSDR 554
>gi|326783799|ref|YP_004324193.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM7]
gi|310003811|gb|ADO98206.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM7]
Length = 552
Score = 63.2 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 61/407 (14%), Positives = 124/407 (30%), Gaps = 56/407 (13%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
M +N+ +N + K + GK+T +L +++ LAN
Sbjct: 60 MYDFQEKLVNNFHNNRFNICKMPRQS----GKSTTVVSYLLHYAIFNDSVTIGILANKAQ 115
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ L L + + + W + ST
Sbjct: 116 TARDLL--------GRLQIAYENLPKWMQQGIIAWNKGSMELENKSKIIAASTSASAVRG 167
Query: 179 ERPDTFVGHHNTYGMAIINDE----ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ I DE A+ D + ++ + I+ S PR ++
Sbjct: 168 MSFN-----------IIFLDEFAFVANHLADDFFSSVYPTISS-GKSTKVIIVSTPRGMN 215
Query: 235 GKFYEIFNK---PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
FY +++ +++ + V G D ++ E I RVE +F
Sbjct: 216 -HFYRLWHDAELGRNEYVTTDVHWSEVPGRDEAWKEQTIKN--TSEAQFRVEFECEFL-G 271
Query: 292 DIDSFIPLNIIEEALNREPC------------PDPYAPLIMGCDIAEEG--GDNTVVVLR 337
+D+ I + ++ + EP P + D+A + +V
Sbjct: 272 SVDTLIAPSKLKTMVYDEPINTGKRGGEIYQNPIEKHNYSITVDVARGVEKDYSAFIVFD 331
Query: 338 RGPVIEHLFDWSKTDL---RTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEML 390
+ + + + I+ Y I+ + N+ G + LE
Sbjct: 332 TTTFPYKVVAKYRNNTIKPMLFPSVIAEFARAYNNAFILCEVNDIGDQIASILFYDLEYE 391
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQ 437
+ V G+ V + + +L VKM+ ++ +N LI+
Sbjct: 392 NVLMTAVRGRAGQVLGQGFSGSKVQLGVKMSKTVKKIGALNLKTLIE 438
>gi|323146129|gb|ADX32368.1| putative terminase ATPase subunit [Cronobacter phage ESSI-2]
Length = 639
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 69/211 (32%), Gaps = 28/211 (13%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY + + F DS +
Sbjct: 377 PDGQWRYVITMEDAIAGGFNLASIEKLRNRY--NPTTFNMLYMCVFVDSK-DSVFSYGDL 433
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLF 346
E + P + G D A G + V++ + +F
Sbjct: 434 EACAVETETWQDHKPDAPRPFGDREVWGGFDPARSGDFSCFVIVAPPLFAGEKFRVLRVF 493
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+W + R +I L +KY + +D G D ++ V AV +
Sbjct: 494 NWKGMNFRWQAKQIEQLFKKYNFAYLGVDVTGIGQGVFDNIQHFALRV--------AVPI 545
Query: 407 EFCRNRRTELHVKMADWLEFASLINHSGLIQ 437
+ RN + +L +K AD +E + L +
Sbjct: 546 RYDRNTKNQLVLKAADVVESQRIEWDKELKE 576
>gi|318603823|emb|CBY25321.1| phage terminase, ATPase subunit [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 257
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/170 (18%), Positives = 47/170 (27%), Gaps = 27/170 (15%)
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDIAEEG 328
R +F S P ++ + Y P+ MG D + G
Sbjct: 31 FRNLFLCEFVDDKA-SVFPFEELQACMVDSLVEWEDFAPFAEQPFNYHPVWMGYDPSHTG 89
Query: 329 GDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
VV+ G L W D I L EKY + I IDA G
Sbjct: 90 DSAGCVVMAPPWVPGGKFRILERHQWKGMDFADQAESIKKLTEKYNVEYIGIDATGIGQG 149
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH 432
+ A ++ + +T + +K D + L
Sbjct: 150 VYQLVR---------NFFPAAREIRYSAEVKTNMVLKAKDLITTGRLEYD 190
>gi|120599697|ref|YP_964271.1| hypothetical protein Sputw3181_2900 [Shewanella sp. W3-18-1]
gi|120559790|gb|ABM25717.1| protein of unknown function DUF264 [Shewanella sp. W3-18-1]
Length = 602
Score = 63.2 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 32/208 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP-------- 317
+ + Y + D F D DS + +E+ + Y P
Sbjct: 365 IDELRDEY--NGDDFANLFMCIFVD-DADSVFKFSDLEKCMVEAARWQDYKPAAPRPFGN 421
Query: 318 --LIMGCDIAEEGGDNTVVVL-----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
+ +G D + DN V+ + ++G L W + +I + KYR
Sbjct: 422 REVWLGYDPSRT-RDNAVLAVVAPGEKKGEKFRVLERHRWRGMNFAHHVAEIQKIYAKYR 480
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
I +D GA D + L + A + + +T L +KM D +E
Sbjct: 481 VTYIGVDTTGIGAGVFDSISTL--------YPREATAIHYSVGSKTRLVLKMIDVVEGGR 532
Query: 429 LINHSGLIQ---NLKSLKSFIVPNTGEL 453
+ +GL + S++ + + G +
Sbjct: 533 IEWDAGLKDIAMSFLSIRRTVTDSGGAI 560
>gi|225872083|ref|YP_002753538.1| putative bacteriophage portal protein [Acidobacterium capsulatum
ATCC 51196]
gi|225792593|gb|ACO32683.1| putative bacteriophage portal protein [Acidobacterium capsulatum
ATCC 51196]
Length = 507
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 66/363 (18%), Positives = 111/363 (30%), Gaps = 65/363 (17%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
FK A+ + R IG + A P + L+ S+ Q + + E +
Sbjct: 46 FKIAVKSAR-IGFSFATALEAALDCLAHPNTTWTVLSASKAQ--SVEFIE-----TCHRL 97
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS-EERPDTFVGHHNTYGMAII 196
+ H WY ++ H ++ R + P T G+ I
Sbjct: 98 IEVMTGTAELYHDEDWYDELGHIEAIQQRITFANGARIIALPANPRTARGYPGNA----I 153
Query: 197 NDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN------------ 242
DE + + I I + + R S P GKFY++
Sbjct: 154 LDEFAHHEESYAIWAAITRQVALGHKVRVL---STPNGEQGKFYDLCKELGLTDGVAPEN 210
Query: 243 --KPLDDWKRFQIDTR----TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
K + W ID I+ +I D+D+ E F + ++
Sbjct: 211 NFKIVKGWSIHWIDAPMAIADGCPINMDEMRQLIQ----DADIVNQEFYCVFLKSG-GAW 265
Query: 297 IPLNIIEEALNREPCPD------PYAPLIMGCDIAEEGGDNT---------VVVLRRGPV 341
IPL++I+ A + + P L G D+ T V+V R
Sbjct: 266 IPLDLIQRAESETATVEWPGGYAPRGRLFGGIDVGRFSNRTTFWVKEDLGDVLVTRMAMA 325
Query: 342 IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML-GYHVYRVLGQ 400
I + + +L K++ + ID+ G D L L V V
Sbjct: 326 IHEMPFPDQANLIAPWMKMTQV--------TAIDSTGMGIGLFDDLNKLCPGRVMGVNFA 377
Query: 401 KRA 403
+
Sbjct: 378 GSS 380
>gi|198242430|ref|YP_002214959.1| hypothetical protein SeD_A1100 [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|193876434|gb|ACF24836.1| ORF11 [Salmonella enterica subsp. enterica serovar Dublin]
gi|197936946|gb|ACH74279.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|326622711|gb|EGE29056.1| hypothetical protein SD3246_1075 [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 423
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 64/372 (17%), Positives = 115/372 (30%), Gaps = 68/372 (18%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT-LNAWLVLWLMSTRPGISVICLANS 116
+E + H +P K I AGR GKTT L W +
Sbjct: 6 VIEFLPFHAGQKKIYRSPAKRKV-IRAGRRFGKTTMLEQAGGNW---------------A 49
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
Q++ +A K L LP+ + + +D + +G + +
Sbjct: 50 ARQMRVGWFAPSYKIL--LPSFKTIRDLLKPITISSSKTDSIIELIGGGLVEF------W 101
Query: 177 SEERPDTFVGHHNTYGMAIINDEAS----GTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ + PD + +I DE S G D+ I L + + + +M P+
Sbjct: 102 TLDNPDAGR---SRKYHKVIIDEGSLVKKGMRDIWEQAIEPTLLDFDGDA--VMAGTPKG 156
Query: 233 --LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
FY+ N W+ T I+P+ II G V + E +F
Sbjct: 157 VDDENFFYQACNDKSMGWEEHHAPTAANPTINPAALARIID--GRPPLVVQQEYNAEFVD 214
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEG---GDNTV-------------- 333
+F L+ + E P + D A++G D +
Sbjct: 215 WRGQNFFKLDWLLENGAPVDYPFSCDTVYGVVDCAQKGKLQNDGSACIWFALDNLPSPHL 274
Query: 334 ------VVLRRGPVIEHLF-DWSKTDLRTTNNKISGLVE-KYRPDAIIIDANNTGARTCD 385
++ G ++ + W +S + + + I+ TG
Sbjct: 275 IILDWDIIQIDGYFLKDVVPQWEGK-----AKHLSEICRARMGTTGLFIEDKATGITLLQ 329
Query: 386 YLEMLGYHVYRV 397
G++V+ V
Sbjct: 330 QDANEGWNVHPV 341
>gi|223939800|ref|ZP_03631671.1| protein of unknown function DUF264 [bacterium Ellin514]
gi|223891576|gb|EEF58066.1| protein of unknown function DUF264 [bacterium Ellin514]
Length = 449
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/345 (14%), Positives = 101/345 (29%), Gaps = 48/345 (13%)
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS-EERPDTFVGHHNTYGMAI 195
K W ++ + H ++T R YS P+ G +
Sbjct: 71 CKAWAQLLDVVAHDLGEIIFDREKKFSAYVLEFATKLRIYSLSSNPNALAGKRGH----V 126
Query: 196 INDEASGTPDV--INLGILGFLTERNA-NRFWIMTSNPRRLSGKFYEIFNKPLDD-WKRF 251
I DE + D + T +G ++I ++ W
Sbjct: 127 ILDEFALHGDQRMLYRIAKPVTTWGGQLEIISTHRGVGTVFNGIIHDIHHRGNPMGWSHH 186
Query: 252 QIDTRTVEGIDPSFHEGIIARYGL--DSDVTRVEVCGQ-------------FPQQDIDSF 296
++ + I+ E I + G + V + P + F
Sbjct: 187 KVTLQEA--IEQGVVERINGKTGEAESREGYLARVRAECLDEEQWLQEYCCVPADESSVF 244
Query: 297 IPLNIIEEALNREPCPDPY-----APLIMGCDIAEEGGDNTVVVLRRGPVIEHL------ 345
I ++I+ + Y PL +G D+ + D +V+ G + +
Sbjct: 245 IGYDLIDACEDDCLKDFEYLRKCENPLYLGFDVGRK-RDLSVI--DVGEKVGDVMWDRMR 301
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAV 404
+ + ++ L+E + IDA G + + + G+ V V
Sbjct: 302 IELAGKTFSEQEAELYRLLELPKLKRACIDATGLGMQLAERAKYRFGWKVEAVTFTGHVK 361
Query: 405 DLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPN 449
+ E N R + + + L +L+ +K + +
Sbjct: 362 E-ELAYNLR--MAFEDRR----VRITRDPLLRADLRGIKKEVTTS 399
>gi|223940405|ref|ZP_03632258.1| protein of unknown function DUF264 [bacterium Ellin514]
gi|223890900|gb|EEF57408.1| protein of unknown function DUF264 [bacterium Ellin514]
Length = 447
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/345 (14%), Positives = 100/345 (28%), Gaps = 48/345 (13%)
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS-EERPDTFVGHHNTYGMAI 195
K W ++ + H ++T R YS P+ G +
Sbjct: 71 CKAWAQLLDVVAHDLGEIIFDREKKFSAYVLEFATKLRIYSLSSNPNALAGKRGH----V 126
Query: 196 INDEASGTPDV--INLGILGFLTERNA-NRFWIMTSNPRRLSGKFYEIFNKPLDD-WKRF 251
I DE + D + T +G ++I + W
Sbjct: 127 ILDEFALHGDQRMLYRIAKPVTTWGGQLEIISTHRGVGTVFNGIIHDIHQRGNPMGWSHH 186
Query: 252 QIDTRTVEGIDPSFHEGIIARYGL--DSDVTRVEVCGQ-------------FPQQDIDSF 296
++ + I+ E I + G + V + P + F
Sbjct: 187 KVTLQEA--IEQGVVERINEKTGEAESREGYLARVRAECLDEEQWLQEYCCVPADESSVF 244
Query: 297 IPLNIIEEALNREPCPDPY-----APLIMGCDIAEEGGDNTVVVLRRGPVIEHL------ 345
I ++I+ + Y PL +G D+ + D +V+ G + +
Sbjct: 245 IGYDLIDACEDDCLKDFEYLRKCENPLYLGFDVGRK-RDLSVI--DVGEKVGDVMWDRMR 301
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAV 404
+ + ++ L+E + IDA G + + + G+ V V
Sbjct: 302 IELAGKTFSEQEAELYRLLELPKLKRACIDATGLGMQLAERAKYRFGWKVEAVTFTGHVK 361
Query: 405 DLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPN 449
+ E N R + + + L +L+ +K + +
Sbjct: 362 E-ELAYNLR--MAFEDRR----VRITRDPLLRADLRGIKKEVTTS 399
>gi|146310462|ref|YP_001175536.1| hypothetical protein Ent638_0800 [Enterobacter sp. 638]
gi|145317338|gb|ABP59485.1| conserved hypothetical protein [Enterobacter sp. 638]
Length = 445
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/290 (14%), Positives = 83/290 (28%), Gaps = 28/290 (9%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L F W + ++ + + + +
Sbjct: 143 ALFWKARKFVETLPVEFRGSWDEKKHAPYMRVEFPDTGAVIKGEAGDNIGR-----GDRT 197
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DEA+ + I L++ R I S+ +S F + + F
Sbjct: 198 TLYFVDEAAFLQRPLL--IDAALSQ--TTRCRIDLSSVNGMSNPFAQ--KRHSGKIPVFT 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
R+ D ++ + +D+ V E+ + IP ++ A++
Sbjct: 252 FHWRSDPRKDNEWYRKECEK--IDNPVIVAQELDLNYQASAEGILIPSEWVQAAVDAHIK 309
Query: 312 --PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS--GLVEKY 367
P + DIA+EG D R G +++ + +WS + + G + Y
Sbjct: 310 LGIQPSGQRLGSMDIADEGKDKNGFSSRYGFLLQSVHEWSGEGSDIYASVVKSFGYCDDY 369
Query: 368 RPDAIIIDANNTGAR------TCDYLEML----GYHVYRVLGQKRAVDLE 407
D D + GA + L G D E
Sbjct: 370 GLDEFRFDEDGLGAGARGDARVINELRQAEGRGTIAATPFRGSGSVFDPE 419
>gi|145636853|ref|ZP_01792518.1| terminase, ATPase subunit [Haemophilus influenzae PittHH]
gi|145269934|gb|EDK09872.1| terminase, ATPase subunit [Haemophilus influenzae PittHH]
Length = 593
Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 54/375 (14%), Positives = 116/375 (30%), Gaps = 70/375 (18%)
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
K + +S ++ A +DV I + + + + T +H
Sbjct: 200 ASKKQALQFRSYIVNYAKQTADVDLKGETIKLPNGAEL--IFLGTNSATAQSYHGN---- 253
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDD 247
+ DE P DV+ G ++ + S P ++ Y + FN+
Sbjct: 254 LYFDEVFWVPKFDVMRKVASGMAAQKMYRQT--YFSTPTTIAHPAYAFFSGKAFNRNRTK 311
Query: 248 WKRFQIDT------------------------RTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ +ID G + + +IA +
Sbjct: 312 SEKIEIDISHENLKSGKLCADRQWKQIVSIYDAMEGGCNLFNIDDLIAENSKEE--FEQL 369
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV 333
QF + +F ++ ++ Y P + +G D A G +
Sbjct: 370 FLCQFADDNSSAFKFSDLQLCQVDSLEEWHDYKPFYQRPFGNREVWLGYDPAFTGDRAAL 429
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
V++ + H + D T ++I + Y I+ID G+ +
Sbjct: 430 VIVAPPKVEGGDYRVLHKQTFHGMDYETQASRIKQFCDDYNVTRIVIDKTGMGSGVYQEV 489
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL---INHSGLIQNLKSLKS 444
A LE+ + + E+ +K + ++ L + ++ + ++K
Sbjct: 490 R---------KFYPMAQGLEYNADLKNEMVLKTQNLIQKRRLKFDSGDNDIVSSFMTVKK 540
Query: 445 FIVPNTGELAIESKR 459
+ TG++ S R
Sbjct: 541 -RITGTGKITYVSDR 554
>gi|53802921|ref|YP_115325.1| prophage MuMc02, terminase, ATPase subunit [Methylococcus
capsulatus str. Bath]
gi|53756682|gb|AAU90973.1| putative prophage MuMc02, terminase, ATPase subunit [Methylococcus
capsulatus str. Bath]
Length = 443
Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/276 (18%), Positives = 80/276 (28%), Gaps = 25/276 (9%)
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
PDT G + ++ DE + D I + ++ + S P KF
Sbjct: 114 NPDTARGFTAS----VLLDEFAFHADSRKIWQALFPVVSRSDLKLRV--ISTPNGKGNKF 167
Query: 238 YEIFNKPLDDWKRFQIDTR-TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID-- 294
Y++ W R D V P E + A G D D E Q+ +
Sbjct: 168 YDLITGDHPVWSRHVTDIYQAVADGLPRDIEELKAGVG-DDDAWAQEYELQWLDEASAWL 226
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV----VLRRGPVIEHLFDWSK 350
SF +N +E P P +G DIA D V+ + + +
Sbjct: 227 SFELINSVEHDHAGIPEHYAGGPCFLGVDIAARN-DLFVIWVLEAVGDVYWTREILARRR 285
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTG-ARTCDYLEMLGYH-VYRVLGQKRAVDLEF 408
+ ++ +YR +D G D G V VL +
Sbjct: 286 ISFAEQDALLADAFNRYRVIRCCMDQTGMGEKPVEDAQRRFGSSRVEGVLFTG--PNKLA 343
Query: 409 CRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
E + + L +L LK
Sbjct: 344 LATTGKEAFEDRRIRIPEG----NQELRNDLHKLKK 375
>gi|145630909|ref|ZP_01786686.1| terminase, ATPase subunit [Haemophilus influenzae R3021]
gi|144983569|gb|EDJ91037.1| terminase, ATPase subunit [Haemophilus influenzae R3021]
Length = 593
Score = 61.7 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 54/375 (14%), Positives = 116/375 (30%), Gaps = 70/375 (18%)
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
K + +S ++ A +DV I + + + + T +H
Sbjct: 200 ASKKQALQFRSYIVNYAKQTADVDLKGETIKLPNGAEL--IFLGTNSATAQSYHGN---- 253
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDD 247
+ DE P DV+ G ++ + S P ++ Y + FN+
Sbjct: 254 LYFDEVFWVPKFDVMRKVASGMAAQKMYRQT--YFSTPTTIAHPAYAFFSGKAFNRNRAK 311
Query: 248 WKRFQIDT------------------------RTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ +ID G + + +IA +
Sbjct: 312 SEKIEIDISHENLKSGKLCADRQWKQIVSIYDAMEGGCNLFNIDDLIAENSKEE--FEQL 369
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV 333
QF + +F ++ ++ Y P + +G D A G +
Sbjct: 370 FLCQFADDNSSAFKFSDLQLCQVDSLEEWHDYKPFYQRPFGNREVWLGYDPAFTGDRAAL 429
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
V++ + H + D T ++I + Y I+ID G+ +
Sbjct: 430 VIVAPPKVEGGDYRVLHKQTFHGMDYETQASRIKQFCDDYNVTRIVIDKTGMGSGVYQEV 489
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL---INHSGLIQNLKSLKS 444
A LE+ + + E+ +K + ++ L + ++ + ++K
Sbjct: 490 R---------KFYPMAQGLEYNADLKNEMVLKTQNLIQKRRLKFDSGDNDIVSSFMTVKK 540
Query: 445 FIVPNTGELAIESKR 459
+ TG++ S R
Sbjct: 541 -RITGTGKITYVSDR 554
>gi|300723941|ref|YP_003713254.1| Terminase, ATPase subunit [Xenorhabdus nematophila ATCC 19061]
gi|297630471|emb|CBJ91136.1| Terminase, ATPase subunit (GpP) [Xenorhabdus nematophila ATCC
19061]
Length = 573
Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 23/144 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE-----------PCPDP 314
+ + +Y D + + +F DI+S L +++ + P
Sbjct: 333 IDRLRRQY--SPDEYQNLLMCEF-MDDIESIFSLQLMQGCMVDSWEIWHDVQPLMLRPYG 389
Query: 315 YAPLIMGCDIAEEG--GDNT---VVVLRR--GPVIEHL--FDWSKTDLRTTNNKISGLVE 365
Y P+ +G D A+ G GD+ V+ + G L W D R ++ I L E
Sbjct: 390 YHPVWIGYDPAKGGENGDSAGCVVIAPPQVPGGKFRILERHQWRGMDFRAQSDAIRQLTE 449
Query: 366 KYRPDAIIIDANNTGARTCDYLEM 389
+Y + I ID+ G ++
Sbjct: 450 QYNVEYIGIDSTGIGHGVYQNVKE 473
>gi|120602517|ref|YP_966917.1| hypothetical protein Dvul_1472 [Desulfovibrio vulgaris DP4]
gi|120562746|gb|ABM28490.1| protein of unknown function DUF264 [Desulfovibrio vulgaris DP4]
Length = 599
Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 57/197 (28%), Gaps = 28/197 (14%)
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-- 306
+ G D + Y + R +F F L +E +
Sbjct: 346 NIITLADAEAGGCDLFDVAQLKLEY--TPEEFRQLFGCEFIDDTQGVF-RLAQLEACMVD 402
Query: 307 --------NREPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTD 352
+P P P+ G D A G D + VL R G I + W
Sbjct: 403 PADWQDVRQGDPHPVGNLPVWGGYDPARSGDDASFAVLLPDLRDGGGIRCIERHKWKGRS 462
Query: 353 LRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNR 412
+I L EKYR + ID G + ++ A + +
Sbjct: 463 YLWQAERIRELAEKYRFAHLGIDTTGPGIGVFEQVQQ---------FCPVATPINYGVQS 513
Query: 413 RTELHVKMADWLEFASL 429
+ L +K + +E L
Sbjct: 514 KAMLVLKAREVIEEGRL 530
>gi|120603805|ref|YP_968205.1| hypothetical protein Dvul_2767 [Desulfovibrio vulgaris DP4]
gi|120564034|gb|ABM29778.1| protein of unknown function DUF264 [Desulfovibrio vulgaris DP4]
Length = 599
Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 57/197 (28%), Gaps = 28/197 (14%)
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-- 306
+ G D + Y + R +F F L +E +
Sbjct: 346 NIITLADAEAGGCDLFDVAQLKLEY--TPEEFRQLFGCEFIDDTQGVF-RLAQLEACMVD 402
Query: 307 --------NREPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTD 352
+P P P+ G D A G D + VL R G I + W
Sbjct: 403 PADWQDVRQGDPHPVGNLPVWGGYDPARSGDDASFAVLLPDLRDGGGIRCIERHKWKGRS 462
Query: 353 LRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNR 412
+I L EKYR + ID G + ++ A + +
Sbjct: 463 YLWQAERIRELAEKYRFAHLGIDTTGPGIGVFEQVQQ---------FCPVATPINYGVQS 513
Query: 413 RTELHVKMADWLEFASL 429
+ L +K + +E L
Sbjct: 514 KAMLVLKAREVIEEGRL 530
>gi|302339289|ref|YP_003804495.1| hypothetical protein Spirs_2798 [Spirochaeta smaragdinae DSM 11293]
gi|301636474|gb|ADK81901.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
Length = 295
Score = 61.3 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/257 (19%), Positives = 85/257 (33%), Gaps = 45/257 (17%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GK+T+ A G +I ++ + Q K L +V +++L + +
Sbjct: 53 CRQAGKSTVIAAKAAHKAKFFSGSLIILVSPALRQSKE-LMRKVEDFIALDKSFPPASEE 111
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
L + SE+ G II DEAS P
Sbjct: 112 DNQLTKE-------------FKNRSRIVALPGSEKTIRGLSGP-----TLIIIDEASRIP 153
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP- 263
D + I + + ++ + P G FY+ +++ W + ++ R + G P
Sbjct: 154 DELYKAIRPMMAGADTE--LVLMTTPFGKRGVFYDAWSRSK-RWTKIEVVGRDILGRFPN 210
Query: 264 -------SFHEGIIARYGLDSDV--------------TRVEVCGQFPQQDIDSFIPLNII 302
+GI A Y V R E G+F IDS + +
Sbjct: 211 EQVYAQLRRKDGIKACYSPRHSVEFLGEELEEMGEWWYRQEYGGEFMDP-IDSVFNMEDV 269
Query: 303 EEALNREPCPDPYAPLI 319
A+ + +AP+I
Sbjct: 270 RAAIINDTPAISFAPII 286
>gi|273810556|ref|YP_003344937.1| gp2 [Sodalis phage SO-1]
gi|258619841|gb|ACV84094.1| gp2 [Sodalis phage SO-1]
Length = 461
Score = 61.3 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 69/335 (20%), Positives = 120/335 (35%), Gaps = 46/335 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+G G GK+ + A V+ L++ PG I + L ++ E+ K + F
Sbjct: 58 SGFGGGKSWVAARKVIQLLTLNPGHDGIVTEPTIPLLVKIMYPELEKAFDEAGFRWKFNK 117
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q D ++ L + K +C S E +G + + I+ DE T
Sbjct: 118 Q-----------DKIYSVL-VKGKWTRVICE--SMENYTRLIGVNAAW---IVADEFDTT 160
Query: 204 PDVINLGILGFLTER---NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR-FQIDTRTVE 259
+ L L R R +++ S P Y+IF D KR + T
Sbjct: 161 KQDVALAAYHKLLGRLRAGFVRQFVIVSTPEGYRAM-YQIFEVEKDSQKRLIRAKTTDNH 219
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ F + + ++Y +++ + G F + + EE + E P LI
Sbjct: 220 HLPADFIDTLRSQY--PANLIDAYLNGLFVNLTSGAVYKMFNREENASTEEVQ-PEDTLI 276
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-------TDLRTTNNKISGLVEKYR---- 368
+G D VV +RR + E+ + DL T I + E+Y
Sbjct: 277 IGMDFNVTKM-AAVVYVRRQRITENKEFLDEIHAVDEFVDLFDTPAMIEAIEERYPDHCA 335
Query: 369 PDAIII--DANN-----TGARTCD--YLEMLGYHV 394
+++ D++ A + D LE G+ V
Sbjct: 336 AGRVVVYPDSSGKSRKTVNASSSDIAQLEDAGFEV 370
>gi|330874284|gb|EGH08433.1| hypothetical protein PSYMP_06646 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 684
Score = 61.3 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 54/306 (17%), Positives = 86/306 (28%), Gaps = 56/306 (18%)
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT-YSEERPDTFVGHHN 189
+LS + + W+ L + + SK + T GHH
Sbjct: 206 FLSASRAQSEIFRSYIIAFAQAWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHG 265
Query: 190 TYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFN 242
+ DE D +N T + + S P +S + Y E F
Sbjct: 266 H----VYVDEYFWIRDFEKLNTVASAMATHKKWRKT--YFSTPSAVSHQAYPFWQGEKFR 319
Query: 243 K----------------------PLDDWKR-FQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
P W++ I G D E + Y D D
Sbjct: 320 NSKRKNAKEPWPSDKQISAGALCPDGQWRKVITILDAIAGGCDLFDLEQLQLEY--DDDK 377
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGG 329
+ +F +F L +E + +P P +P+ +G D +
Sbjct: 378 FQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRD 436
Query: 330 DNTVVV----LRRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
D T VV L G L W + ++ L E++ I ID G
Sbjct: 437 DATCVVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGV 496
Query: 384 CDYLEM 389
D +
Sbjct: 497 FDLVRD 502
>gi|301386048|ref|ZP_07234466.1| hypothetical protein PsyrptM_25573 [Pseudomonas syringae pv. tomato
Max13]
gi|302060830|ref|ZP_07252371.1| hypothetical protein PsyrptK_12639 [Pseudomonas syringae pv. tomato
K40]
gi|302129770|ref|ZP_07255760.1| hypothetical protein PsyrptN_00140 [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 684
Score = 61.3 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 54/306 (17%), Positives = 86/306 (28%), Gaps = 56/306 (18%)
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT-YSEERPDTFVGHHN 189
+LS + + W+ L + + SK + T GHH
Sbjct: 206 FLSASRAQSEIFRSYIIAFAQAWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHG 265
Query: 190 TYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFN 242
+ DE D +N T + + S P +S + Y E F
Sbjct: 266 H----VYVDEYFWIRDFEKLNTVASAMATHKKWRKT--YFSTPSAVSHQAYPFWQGEKFR 319
Query: 243 K----------------------PLDDWKR-FQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
P W++ I G D E + Y D D
Sbjct: 320 NSKRKAAKDPWPSDKQISAGALCPDGQWRKVITILDAIAGGCDLFDLEQLQLEY--DDDK 377
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGG 329
+ +F +F L +E + +P P +P+ +G D +
Sbjct: 378 FQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRD 436
Query: 330 DNTVVV----LRRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
D T VV L G L W + ++ L E++ I ID G
Sbjct: 437 DATCVVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGV 496
Query: 384 CDYLEM 389
D +
Sbjct: 497 FDLVRD 502
>gi|152973346|ref|YP_001337126.1| putative prophage large terminase protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|150958195|gb|ABR80225.1| putative prophage large terminase protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
Length = 589
Score = 61.3 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/207 (18%), Positives = 58/207 (28%), Gaps = 30/207 (14%)
Query: 244 PLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W++ I+ G E + +D R +F S P +
Sbjct: 328 PDGQWRQIVTIEDALAGGCTLFNLEQLKRENSVDD--FRNLFMCEFVDDKA-SVFPFEDL 384
Query: 303 EEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL----RRGPVIEHL-- 345
+ + P+ +G D + G VVL G L
Sbjct: 385 QRCMVDSLEEWEDFAPFADNPFGSRPVWVGYDPSHSGDSAGCVVLAPPVVAGGKFRILER 444
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
W D T I L EKY + I IDA G + A D
Sbjct: 445 HQWKGMDFATQAESIRQLTEKYNVEYIGIDATGLGIGVFQLVR---------SFYPAARD 495
Query: 406 LEFCRNRRTELHVKMADWLEFASLINH 432
+ + +T + +K D + L
Sbjct: 496 IRYTPEMKTAMVLKAKDVIRRGCLEYD 522
>gi|296141561|ref|YP_003648804.1| terminase [Tsukamurella paurometabola DSM 20162]
gi|296029695|gb|ADG80465.1| Terminase [Tsukamurella paurometabola DSM 20162]
Length = 489
Score = 61.3 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 77/407 (18%), Positives = 115/407 (28%), Gaps = 74/407 (18%)
Query: 28 FSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRG 87
F F F KGT +G R WQ++ V +V P RG
Sbjct: 27 FLAFADKFLR-VPKGTGAKGKLHLRDWQVDVARDVLDSGARTVGIMFP----------RG 75
Query: 88 IGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
GKTTLNA + L+ T G +V +A E Q L+ + E+
Sbjct: 76 QGKTTLNAAIALYRFFTGGEGANVCVVAVDERQAG----------LAFSAARRMVELNEE 125
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
+ D L+ + + C S P G + + DEA
Sbjct: 126 LSARCQIFKDRLY----LPTTDSVFQCLPAS---PTALEGL---DYVLALVDEAGVVNRD 175
Query: 207 INLGILGFLTERNANRFWIMTSNPRRLSG--------KFYEIFNKPLD-DWKRFQI---- 253
+ + + + P ++ W+ F
Sbjct: 176 VFEVVQLA-QGKREKSVLVAIGTPGPNLDDQVLLSLRDYHLEHPDDASLRWREFSAAGFE 234
Query: 254 -----DTRTVEGIDPSFHEGIIAR--------YGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
T E +P+ + + +S R QF SF+P
Sbjct: 235 DHPVDCTHCWELANPALDDFLHRDALVALLPPKTRESTFRRAR-LCQFAADTEGSFLPAG 293
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR---GPVIEHLFDWSKTDLR--- 354
+ E EP P A +++ D D T ++L P L W +
Sbjct: 294 VWEGLSTGEPVP-LGAEVVIALD-GSFSDDTTALLLGTVAAAPHFHPLRVWERPADNDDW 351
Query: 355 -----TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
N I Y+ II D RT LE G V
Sbjct: 352 RVPVLEVENTIRQACRDYQVVEIIADPFRW-TRTLQVLEQEGLPVVE 397
>gi|114046227|ref|YP_736777.1| hypothetical protein Shewmr7_0720 [Shewanella sp. MR-7]
gi|113887669|gb|ABI41720.1| protein of unknown function DUF264 [Shewanella sp. MR-7]
Length = 602
Score = 61.3 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 20/164 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ I+ G D + + Y + D F D DS + +
Sbjct: 342 PDKQWRYVVTIEDALAGGCDLFDIDELREEY--NGDDFNNLFMCIFVD-DADSVFKFSDL 398
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL----RRGPVIEHLFD- 347
E+ + + P + +G D + + T+VV+ ++G L
Sbjct: 399 EKCMVDAARWQDHKPAAPRPFGNREVWLGYDPSRTRDNATLVVVAPGEKKGEKFRVLEKH 458
Query: 348 -WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
W + +I + KYR I +D GA D + L
Sbjct: 459 YWRGMNFSHHVAEIQKIYAKYRVTYIGVDTTGIGAGVFDSISTL 502
>gi|291334706|gb|ADD94352.1| hypothetical protein Ddes_0719 [uncultured phage
MedDCM-OCT-S04-C890]
Length = 311
Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%)
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+A + Q K+ W + ++ + +PN + E + P +L
Sbjct: 6 NPRFAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPNGSRITLLG------- 58
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN-LGILGFLTERNANRFWI 225
E D G + + DE + + I L++R + +
Sbjct: 59 -----------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDR--KGYCV 102
Query: 226 MTSNPRRLSGKFYEIFNKPLD--DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P ++ FY+++ DW ++ + +DP E G E
Sbjct: 103 FIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKK--YLQE 160
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE---GGDNTVVVLRRGP 340
+ + I + + PY P + A + ++++ ++
Sbjct: 161 FECDWIANIEGAIYGEEIAKIEDKNQIARVPYDP-TLPVSTAWDLGVADHSSIIFFQQKG 219
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEK 366
+ D+ + + I L EK
Sbjct: 220 TGVQIIDYHEERGHGLPHYIQMLEEK 245
>gi|330830158|ref|YP_004393110.1| phage-related terminase [Aeromonas veronii B565]
gi|328805294|gb|AEB50493.1| Phage-related terminase [Aeromonas veronii B565]
Length = 588
Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 67/210 (31%), Gaps = 35/210 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAP------- 317
+ + + Y D R + +F S PL ++ + + + Y P
Sbjct: 349 LDQLRSEYSEDE--YRNLLMCEFMDDTE-SLFPLATLQRCMVDSWLVWEDYKPHTLRPLA 405
Query: 318 ---LIMGCDIAEEGGDNTV--------VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
+ +G D A+ G ++ +V + W D I + ++
Sbjct: 406 NRAVWIGYDPAKGGKGDSAGCAVLAPPLVPGGKFRVLERHRWQGMDFDAQAKSIRAICDR 465
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF 426
Y I ID G ++ +++ N + + +K D +
Sbjct: 466 YNVAYIGIDTTGIGEGVYQLVKQ---------FYPAVTAIQYNPNVKMRMVMKAQDVMNK 516
Query: 427 ASLINHSG---LIQNLKSLKSFIVPNTGEL 453
L SG L Q S++ V +G+L
Sbjct: 517 GRLEFDSGWTDLAQAFMSIRR-AVTQSGKL 545
>gi|330939345|gb|EGH42730.1| hypothetical protein PSYPI_10145 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 650
Score = 60.9 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 54/306 (17%), Positives = 86/306 (28%), Gaps = 56/306 (18%)
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT-YSEERPDTFVGHHN 189
+LS + + W+ L + + SK + T GHH
Sbjct: 206 FLSASRAQSEIFRSYIIAFAQAWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHG 265
Query: 190 TYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFN 242
+ DE D +N T + + S P +S + Y E F
Sbjct: 266 H----VYVDEYFWIRDFEKLNTVASAMATHKKWRKT--YFSTPSAVSHQAYPFWQGEKFR 319
Query: 243 K----------------------PLDDWKR-FQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
P W++ I G D E + Y D D
Sbjct: 320 NSKRKAAKDPWPSDKQISAGALCPDGQWRKVITILDAIAGGCDLFDLEQLQLEY--DDDK 377
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGG 329
+ +F +F L +E + +P P +P+ +G D +
Sbjct: 378 FQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRD 436
Query: 330 DNTVVV----LRRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
D T VV L G L W + ++ L E++ I ID G
Sbjct: 437 DATCVVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGV 496
Query: 384 CDYLEM 389
D +
Sbjct: 497 FDLVRD 502
>gi|330985172|gb|EGH83275.1| hypothetical protein PLA107_09108 [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 684
Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 54/306 (17%), Positives = 86/306 (28%), Gaps = 56/306 (18%)
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT-YSEERPDTFVGHHN 189
+LS + + W+ L + + SK + T GHH
Sbjct: 206 FLSASRAQSEIFRSYIIAFAQAWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHG 265
Query: 190 TYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFN 242
+ DE D +N T + + S P +S + Y E F
Sbjct: 266 H----VYVDEYFWIRDFEKLNTVASAMATHKKWRKT--YFSTPSAVSHQAYPFWQGEKFR 319
Query: 243 K----------------------PLDDWKR-FQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
P W++ I G D E + Y D D
Sbjct: 320 NSKRKAAKDPWPSDKQISAGALCPDGQWRKVITILDAIAGGCDLFDLEQLQLEY--DDDK 377
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGG 329
+ +F +F L +E + +P P +P+ +G D +
Sbjct: 378 FQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRD 436
Query: 330 DNTVVV----LRRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
D T VV L G L W + ++ L E++ I ID G
Sbjct: 437 DATCVVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGV 496
Query: 384 CDYLEM 389
D +
Sbjct: 497 FDLVRD 502
>gi|331017153|gb|EGH97209.1| hypothetical protein PLA106_13994 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 684
Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 54/306 (17%), Positives = 86/306 (28%), Gaps = 56/306 (18%)
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT-YSEERPDTFVGHHN 189
+LS + + W+ L + + SK + T GHH
Sbjct: 206 FLSASRAQSEIFRSYIIAFAQAWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHG 265
Query: 190 TYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFN 242
+ DE D +N T + + S P +S + Y E F
Sbjct: 266 H----VYVDEYFWIRDFEKLNTVASAMATHKKWRKT--YFSTPSAVSHQAYPFWQGEKFR 319
Query: 243 K----------------------PLDDWKR-FQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
P W++ I G D E + Y D D
Sbjct: 320 NSKRKAAKDPWPSDKQISAGALCPDGQWRKVITILDAIAGGCDLFDLEQLQLEY--DDDK 377
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGG 329
+ +F +F L +E + +P P +P+ +G D +
Sbjct: 378 FQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRD 436
Query: 330 DNTVVV----LRRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
D T VV L G L W + ++ L E++ I ID G
Sbjct: 437 DATCVVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGV 496
Query: 384 CDYLEM 389
D +
Sbjct: 497 FDLVRD 502
>gi|190890121|ref|YP_001976663.1| hypothetical protein RHECIAT_CH0000492 [Rhizobium etli CIAT 652]
gi|190695400|gb|ACE89485.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 465
Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 58/406 (14%), Positives = 128/406 (31%), Gaps = 61/406 (15%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPG---------ISVICLANSETQLKTTLWAEVSKWLSLL 135
GR GK+ A + ++L +V+ +A Q + L V ++L
Sbjct: 68 GRRGGKSFTMALIAVFLACFFDYRQYLAPGERATVLVIATDRRQARVIL-RYVR---AML 123
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
N + + D +S ++ R T+
Sbjct: 124 DNIPLLQAMVERDTADSFDLD--------NSTTIEVGTASFRSTRGYTYAAVLCDELAFW 175
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
D+A+ I I + N + S+P G ++ F + +
Sbjct: 176 RTDDAAEPDYAILDAIRPGMASI-PNSMLLCASSPHARRGALWDAFKRFWGKDDAPLVWR 234
Query: 256 RTVEGIDPSFHEGIIAR-YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR---EPC 311
++P+ + ++ R D E +F + DI+ F+ + ++E+ ++R E
Sbjct: 235 AATREMNPTISQSVVDRALERDHASAMAEYGAEF-RSDIEQFVNIEVVEDCVSRGVYERA 293
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-----TDLRTTNNKISGLVEK 366
P P D + D+ + + ++ D + + + + + K
Sbjct: 294 PLPNIRYRAFVDPSGGSNDSMTLAIGHKEGERNILDCVRERKPPFSPESVVAEFADTLAK 353
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF 426
YR + + R +K+ + + R++L+ M L
Sbjct: 354 YRVREV-------------EGDRYAGEWPREQFRKKGITYKIAEKPRSDLYRDMLPLLNS 400
Query: 427 A--SLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAK-STDYS 469
L++ L+ + +E + +G K S D++
Sbjct: 401 GVADLLDSDRLVTQIVG-------------LERRVSRGGKESIDHA 433
>gi|83943081|ref|ZP_00955541.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
gi|83846089|gb|EAP83966.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
Length = 259
Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/260 (17%), Positives = 75/260 (28%), Gaps = 40/260 (15%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
P +WQ++ + + +N + +GR GK+T L G
Sbjct: 30 GEPDAWQVDLLRS------DPRSNEADRMILAL--SGRQSGKSTTAGGLG--YDDFSRGK 79
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLP-NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+VI A S Q T L+ + ++ + P L P + + D
Sbjct: 80 TVILTAPSLRQ-STELFRRILEYKNTDPFCPPIVRQTQTELEAHPRHGGRIIVVPATDQ- 137
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
R + + II DEA D E +
Sbjct: 138 -----ARGMTAD--------------TIIADEACFLDDDALTAFFPMRKETG---RIFLL 175
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
S P G FYE + +R + + + E A + R E +
Sbjct: 176 STPNMRQGYFYETWTSAKRV-RRITARSIDIPR-RKAQVEFDKAT--MSEATFRREHLCE 231
Query: 288 FPQQDIDSFIPLNIIEEALN 307
F + +E+A N
Sbjct: 232 FI-GAGTPLVSWEALEKASN 250
>gi|332185581|ref|ZP_08387329.1| terminase-like family protein [Sphingomonas sp. S17]
gi|332014559|gb|EGI56616.1| terminase-like family protein [Sphingomonas sp. S17]
Length = 436
Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 68/409 (16%), Positives = 134/409 (32%), Gaps = 58/409 (14%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I AGRG GKT A V L PG + + + ++ + + +
Sbjct: 60 IRAGRGFGKTRAGAEWVSALARDNPGARIALMGATLRDVERVM----------VRGESGL 109
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG--HHNTY--GMAIIN 197
+ W + + ++ YS P+ G HH + +
Sbjct: 110 LAVARKGEAPKWIGSLGQVHFTSGAIGFA-----YSAAAPEALRGPQHHAAWCDELGKWK 164
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
EA G +++ LG + ++T+ PR + K + + RT
Sbjct: 165 GEA-GWDNLMMTLRLG------EHPRVLVTTTPRATP-----LMRKVMALPDCVETIGRT 212
Query: 258 VE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ + SF + ++++YG D+ + R E+ G+ + +++ R
Sbjct: 213 SDNAHLPDSFQDAMLSQYG-DTRLGRQELDGEMVDDREGALWTRALLDR--QRVKTVPAL 269
Query: 316 APLIMGCD-IAEEGGDNTVVV---LRRGPVIEHLFDWSKTDLRTT--NNKISGLVEKYRP 369
+++G D A GD +V L R L D S+ L +++G + R
Sbjct: 270 DRVVVGVDPPATSSGDACGIVAVGLGRDGHGYVLEDASEAGLSPEGWAARVAGCARRNRA 329
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
D ++ + N G + + L V ++ + L+ + W
Sbjct: 330 DRVVAERNQ-GGDMVESVLRLADPTLPVHLVYASIGKAARAEPVSFLYAQGRVW-HARGF 387
Query: 430 INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ L ++ P S D +D L++ E
Sbjct: 388 PALEDELCGLGVAGAYDGP--------------GHSPDRADALVWALTE 422
>gi|320172719|gb|EFW47954.1| Phage terminase, ATPase subunit [Shigella dysenteriae CDC 74-1112]
Length = 590
Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 61/209 (29%), Gaps = 33/209 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGELA 454
+ + ++ S + ++G +A
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGRIA 546
>gi|239502629|ref|ZP_04661939.1| hypothetical protein AbauAB_09982 [Acinetobacter baumannii AB900]
Length = 414
Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 49/307 (15%), Positives = 98/307 (31%), Gaps = 38/307 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ AGR GKT+L+ L++ S +P + +A + K +W ++
Sbjct: 26 VVAGRRWGKTSLSRTLII-SKSRKPRQRIWYVAPTYRMAKQIMWKDL------------- 71
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ P W + H SL I+ + T+ + PD+ G ++ DE
Sbjct: 72 ----IEAIPRKWVVKINHSSLSIELVN-GTLIELKGADDPDSLRGVGID---FLVLDEFQ 123
Query: 202 GTPDVINL-GILGFLTERNANRFWIMTSNPRRLSGKF------YEIFNKPLDDWKRFQID 254
+ + L + + P+ + + + W+ +Q
Sbjct: 124 DISEEAWTQCLRPTLASTGGHAIF--IGTPKAYNQLYTVYMQGQDPKKVKAGQWQSWQFP 181
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
T T I S E A S + E F + P + E + DP
Sbjct: 182 TITSPFIPESEIEAARADMDEKS--FKQEFLASFETMSGRVYYPFDRKEH--VGKYPFDP 237
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVEKY-RPDA 371
P+ +G D + ++ + + + + ++ +I +Y +
Sbjct: 238 KLPIWIGMDFNIDPMSTVIMQPQPNGEVWVVDEIVQFGSNTEEICEEIERKYWRYMKQIV 297
Query: 372 IIIDANN 378
I D
Sbjct: 298 IFPDPAG 304
>gi|291336431|gb|ADD95986.1| hypothetical protein Ddes_0719 [uncultured organism
MedDCM-OCT-S04-C1073]
Length = 311
Score = 60.9 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 32/266 (12%)
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+A + Q K+ W + ++ + +PN + E + P +L
Sbjct: 6 NPRYAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPNGSRITLLG------- 58
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN-LGILGFLTERNANRFWI 225
E D G + + DE + + I L++R + +
Sbjct: 59 -----------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDR--KGYCV 102
Query: 226 MTSNPRRLSGKFYEIFNKPLD--DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P ++ FY+++ DW ++ + +DP E G E
Sbjct: 103 FIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKK--YLQE 160
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE---GGDNTVVVLRRGP 340
+ + I + + PY P + A + ++++ ++
Sbjct: 161 FECDWIANIEGAIYGEEIAKIEDKNQIARVPYDP-TLPVSTAWDLGVADHSSIIFFQQKG 219
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEK 366
+ D+ + + I L EK
Sbjct: 220 TGVQIIDYHEERGHGLPHYIQMLEEK 245
>gi|67920466|ref|ZP_00513986.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
gi|67857950|gb|EAM53189.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
Length = 244
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 37/234 (15%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-------------GISVICLANSETQL 120
+P+ F+ + GR GK+ L + P +V+ + Q
Sbjct: 18 DPQKFQVLV-CGRRFGKSHLQVTKHVIDCLMFPKLMPGYNVKQQTMETAVLVGMPTLKQA 76
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+ LW + K L P ++ D++ L ++ + + +
Sbjct: 77 RKILWKPLVKTLENCPYVDKISRSDYTIRFKGNRPDIILAGLNDNAGDRARGLKLWR--- 133
Query: 181 PDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
+ DE P VI+ I+ + + + + T P+ + Y
Sbjct: 134 --------------VCIDEVQDVRPSVIDAVIIPAMADT-PHSRALFTGTPKGKNNHLYN 178
Query: 240 IFN--KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+F + DDWK + T T I E R L + E Q+ +
Sbjct: 179 LFTMERDNDDWKSYNFPTWTNPLISKDEVERARKR--LSPRLFSQEFEAQWKES 230
>gi|294085818|ref|YP_003552578.1| hypothetical protein SAR116_2251 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665393|gb|ADE40494.1| protein of unknown function DUF264 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 454
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 74/401 (18%), Positives = 133/401 (33%), Gaps = 54/401 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AGRG GKT A + WL + + + + + + S LS+ PN
Sbjct: 82 AGRGFGKTRAGAEWIRWLAQSGRARRIALVGETFDDARQVMVEGASGILSVCPN------ 135
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE-ASG 202
W T+ R YS + P+ G YG DE A
Sbjct: 136 ---------WARPAWRAGQRTLIWPSGTIARCYSADDPEQLRGPEFDYG---WADEIAKW 183
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE-GI 261
++ L + I T+ P R ++ +D Q +R +
Sbjct: 184 RYPSAWDNLMLAL-RIGKSPQCIATTTP-RPVRWLADL--AAAEDTVLVQGASRENAANL 239
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
P+F + R+G DS + R E+ G D+ N I P + +++G
Sbjct: 240 SPAFMAAMHRRFG-DSYLARQELEGIMMSNLPDALWCRNDILRLHRPMPKRHRFIRIVIG 298
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK----ISGLVEKYRPDAIIIDAN 377
D A GGD T ++ H++ + L T ++ I + ++R D++I + N
Sbjct: 299 VDPAMGGGDETGIITAGKDQDGHIWILADDSLHATPDRWAVQIQRVFRQWRADSVIAEIN 358
Query: 378 NTGARTCDYLEMLG--YHVYRVLG-QKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
G+ L G V V + +++ E ++ +F +L +
Sbjct: 359 QGGSLIRTLLAQAGCALPVREVRAMRSKSIRAEPVA--AAYARGDVSHAGQFGALED--- 413
Query: 435 LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + + S D D +++
Sbjct: 414 ---QMCACVP--------------GQRQTPSPDRLDAMVWA 437
>gi|126173520|ref|YP_001049669.1| hypothetical protein Sbal_1282 [Shewanella baltica OS155]
gi|125996725|gb|ABN60800.1| protein of unknown function DUF264 [Shewanella baltica OS155]
Length = 602
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 30/207 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP-------- 317
+ + Y + D F D DS + +E+ + Y P
Sbjct: 365 IDELRDEY--NGDDFANLFMCIFVD-DADSVFKFSDLEKCMVEAARWQDYKPAAPRPFGN 421
Query: 318 --LIMGCDIAEEGGDNTVVVL----RRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRP 369
+ +G D + + T+VV+ ++G L W + +I + KYR
Sbjct: 422 REVWLGYDPSRTRDNATLVVVAPGEKKGEKFRVLEKHYWRGMNFSHHVAEIQKIYAKYRV 481
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
I +D GA D + L + A + + +T L +KM D +E +
Sbjct: 482 TYIGVDTTGIGAGVFDSISTL--------YPREATAIHYSVGSKTRLVLKMIDVIEGGRI 533
Query: 430 I---NHSGLIQNLKSLKSFIVPNTGEL 453
H + + S++ + + G +
Sbjct: 534 EWDAGHKDIAMSCLSIRRTVTDSGGAI 560
>gi|152985800|ref|YP_001350388.1| hypothetical protein PSPA7_5052 [Pseudomonas aeruginosa PA7]
gi|152986886|ref|YP_001346099.1| hypothetical protein PSPA7_0704 [Pseudomonas aeruginosa PA7]
gi|150960958|gb|ABR82983.1| conserved hypothetical protein, putative [Pseudomonas aeruginosa
PA7]
gi|150962044|gb|ABR84069.1| conserved hypothetical protein, putative [Pseudomonas aeruginosa
PA7]
Length = 682
Score = 60.5 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 53/179 (29%), Gaps = 20/179 (11%)
Query: 244 PLDDWKR-FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W++ I G + E + Y D + +F +F L +
Sbjct: 340 PDGQWRKVITIQDAIAGGCNLFDLERLQLEY--DEERFEQLFMCKFIDSTQAAF-ALADL 396
Query: 303 EEALNR----------EPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEHLFD- 347
E + P P P+ +G D + D T VV L G L
Sbjct: 397 ERCYSDLGLWTDYDPDSPRPFDNRPVWLGYDPSRTRDDATCVVVAPPLEPGGKFRILEKH 456
Query: 348 -WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
W T +I L E++ I ID G D ++ + A +
Sbjct: 457 SWRGTSFTHQAKQIEKLCERFNVQHIGIDITGVGYGVFDLVKDFFPRATPIHYSLEAKN 515
>gi|260582917|ref|ZP_05850701.1| terminase ATPase subunit [Haemophilus influenzae NT127]
gi|260094017|gb|EEW77921.1| terminase ATPase subunit [Haemophilus influenzae NT127]
Length = 593
Score = 60.1 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/219 (15%), Positives = 73/219 (33%), Gaps = 31/219 (14%)
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP-- 317
G + + +IA + QF + +F ++ ++ Y P
Sbjct: 348 GCNLFNIDDLIAENSKEE--FEQLFLCQFADDNSSAFKFSDLQLCQVDSLEEWHDYKPFY 405
Query: 318 --------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGL 363
+ +G D A G +V++ + H + D T ++I
Sbjct: 406 QRPFGNREVWLGYDPAFTGDRAALVIVAPPKVEGGDYRVLHKQTFHGMDYETQASRIKQF 465
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
+ Y I+ID G+ + A LE+ + + E+ +K +
Sbjct: 466 CDDYNVTRIVIDKTGMGSGVYQEVR---------KFYPMAQGLEYNADLKNEMVLKTQNL 516
Query: 424 LEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESKR 459
++ L + ++ + ++K + TG++ S R
Sbjct: 517 IQKRRLKFDSGDNDIVSSFMTVKK-RITGTGKITYVSDR 554
>gi|332654528|ref|ZP_08420271.1| phage terminase, large subunit, PBSX family [Ruminococcaceae
bacterium D16]
gi|332516492|gb|EGJ46098.1| phage terminase, large subunit, PBSX family [Ruminococcaceae
bacterium D16]
Length = 418
Score = 60.1 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 55/347 (15%), Positives = 112/347 (32%), Gaps = 46/347 (13%)
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL-WLMSTRPGISVICLANSETQLKTTLWA 126
+ N + GA+ + GKT W MS + S ++ L +
Sbjct: 21 SPFRNCQAIICDGAVRS----GKTLCTGLSFFCWAMSCYQDKTFALCGKSIPSVRRNLLS 76
Query: 127 EVSKWLSLL--PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
E+ L L + L++ S+ + G+D R+ + + T
Sbjct: 77 ELLPILRQLGFSCRERASRNQLTVTM-GHRSNTFYLFGGLDE-------RSAALVQGITL 128
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G + DE + P + + + R W NP + FY+ + +
Sbjct: 129 AGA--------LLDEVALMPRSFVEQVCARCSVEGS-RLWFSC-NPESPAHWFYQEWIQK 178
Query: 245 LDDWKRFQID--TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS--FIPLN 300
++ K ++ + P+ E + R V G++ + F +
Sbjct: 179 AEEKKVLRLSFAMTDNPSLSPAMLERYRTMF--QGAFYRRFVLGEWVNAEGLVYDFFSQD 236
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--------SKTD 352
++ REP D P + CD + + R+ V L ++ +
Sbjct: 237 LV-----REPPLDVSGPFYVSCDYGTVNPTSMGLWGRKNGVWYRLEEYYYNSRQARRQKT 291
Query: 353 LRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
+ + + LV+ A+++D + A + L G V +
Sbjct: 292 DQEYADDLGALVKGRPLGAVVVDPSA--ASFIEVLRRRGVPVRKANN 336
>gi|289628558|ref|ZP_06461512.1| hypothetical protein PsyrpaN_26063 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289648058|ref|ZP_06479401.1| hypothetical protein Psyrpa2_09957 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330870325|gb|EGH05034.1| hypothetical protein PSYAE_24348 [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 684
Score = 60.1 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 54/306 (17%), Positives = 86/306 (28%), Gaps = 56/306 (18%)
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT-YSEERPDTFVGHHN 189
+LS + + W+ L + + SK + T GHH
Sbjct: 206 FLSASRAQSEIFRSYIIAFAQSWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHG 265
Query: 190 TYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFN 242
+ DE D +N T + + S P +S + Y E F
Sbjct: 266 H----VYVDEYFWIRDFEKLNTVASAMATHKKWRKT--YFSTPSAVSHQAYPFWQGEKFR 319
Query: 243 K----------------------PLDDWKR-FQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
P W++ I G D E + Y D D
Sbjct: 320 NSKRKAAKDPWPSDKQISAGALCPDGQWRKVITILDAIAGGCDLFDLEQLQLEY--DEDK 377
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGG 329
+ +F +F L +E + +P P +P+ +G D +
Sbjct: 378 FQQLFMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRD 436
Query: 330 DNTVVV----LRRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
D T VV L G L W + ++ L E++ I ID G
Sbjct: 437 DATCVVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGV 496
Query: 384 CDYLEM 389
D +
Sbjct: 497 FDLVRD 502
>gi|116751218|ref|YP_847905.1| hypothetical protein Sfum_3801 [Syntrophobacter fumaroxidans MPOB]
gi|116700282|gb|ABK19470.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
Length = 507
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 62/394 (15%), Positives = 108/394 (27%), Gaps = 69/394 (17%)
Query: 38 WGEKGTPLEGFSAPRSW--QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA 95
WG+ S W Q+E + + ++ GR +GK+ + +
Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65
Query: 96 WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
L T G + A + L T + E+ L P+ M S++L
Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHLDTII-EEIEFQLDSNPD----LMNSIALTKYGKPK 120
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
++ + S + + D F H + DE + + + L
Sbjct: 121 IHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLTERAWKALRQCL 177
Query: 216 TERNANRFWIMTSNPRRL-SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY- 273
R + S P L +Y + D + F+ + ++ Y
Sbjct: 178 KAGGTLRIY---STPNGLRDTTYYRL--TSSDQFHVFRWPSWLNPLWTEDREAELLEFYG 232
Query: 274 GLDSDVTRVEVCGQFPQQDIDSF-----------------IPLNII--------EEALNR 308
G DS + EV G+ + +F I + E A +R
Sbjct: 233 GRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRDCDTEEAAHDR 292
Query: 309 -----EPCPDPYAPLIMGCDIAEEGG-------DNTVVVLRRGPVIEHLFDWSKTDLRTT 356
P + G D+ T + R +
Sbjct: 293 LEMLLNLTPRSGQFWVGG-DLGYTNDPTEIVVFQETEIGERTLLKMILRVHLEHVSYPHI 351
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
I+ L Y P I +D G L L
Sbjct: 352 AQIIALLERYYTPAGIGVDNGGNGLAVVQELLTL 385
>gi|170748408|ref|YP_001754668.1| hypothetical protein Mrad2831_1990 [Methylobacterium radiotolerans
JCM 2831]
gi|170654930|gb|ACB23985.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
2831]
Length = 478
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/334 (15%), Positives = 106/334 (31%), Gaps = 35/334 (10%)
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG 213
S+ + G+D + +T R +T G + ++ +I +
Sbjct: 145 TSETIRLLSGVDIEVRPANYKTI---RGETLAGCLADEVAFWHLENSANPDTLILDAVRP 201
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI------DTRTVEGIDPSFHE 267
L + S+P G+ Y + + +DP+ +
Sbjct: 202 GLATTGGP--LCVLSSPYARKGELYRTHQRDFGPSGDPAVLVLRAPSQTMNPSLDPAVVK 259
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---REPCPDPYAPLIMGCDI 324
Y D E +F + D+++FI L ++ + E P P CD
Sbjct: 260 ---RAYTRDPAAASAEYGAEF-RADVEAFISLEAVQACMAGDLLERAPAPGLTYQAFCDP 315
Query: 325 AEEGGDNTVVVLRRGPVIEHLFD-----WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+ G D+ + + D + + + L++ Y ++ D
Sbjct: 316 SGGGADSMTLAIGHAENGIAYLDAVREMYPGGSPEAVVSTFAELLQSYGLGSVTGDHY-A 374
Query: 380 GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNL 439
G + + G R K + EF ++ + ++ + L L
Sbjct: 375 GEWPKERFRVHGITYERSERSKSDIYREFLPVLNSQ---RCR-------MLPVAKLEAQL 424
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
SL+ TG+ I+ +VKGA D ++ +
Sbjct: 425 VSLERRTTRGTGKDTIDHPQVKGAHD-DVANAVA 457
>gi|323699495|ref|ZP_08111407.1| protein of unknown function DUF264 [Desulfovibrio sp. ND132]
gi|323459427|gb|EGB15292.1| protein of unknown function DUF264 [Desulfovibrio desulfuricans
ND132]
Length = 428
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 55/334 (16%), Positives = 98/334 (29%), Gaps = 43/334 (12%)
Query: 79 KGAISAGRG-IGKTTLN-AWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ A+ GKT L+ L+ TR +A Q KT +W E+ ++
Sbjct: 21 RFAVLVCHRRFGKTVLSVNRLINAARETRRDDWRGAYIAPLYRQAKTVVWDELKRY---- 76
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+ ++ + +D + S R + PD+ G + +
Sbjct: 77 -CGFGLDGCTVKFNETELRADFDNGSR----------IRLFGANNPDSLRGMYLDG---V 122
Query: 196 INDEASGTPDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL--DDWKRFQ 252
+ DE + P + I L++R + PR + YEI+ K DW
Sbjct: 123 VFDEVAQMPLRVWTEVIRPALSDRKGWAMF--IGTPRGKNA-LYEIWEKGKTDPDWLAAM 179
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL---NIIEEALNRE 309
+ E + + E F ++ + E +
Sbjct: 180 YRASETGILPVEELEASARE--MSPEEYEQEFECSFTAAIRGAYFGQLLADADREGRMTD 237
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVL---RRGPVIEHLFDWS--KTDLRTTNNKISGLV 364
DP P+ D+ D+T + R G + + L +
Sbjct: 238 VPADPSMPVHTAWDLGM--SDSTSIWFVQARPGGTFAVIDYYEACGEGLDHYARILDDKG 295
Query: 365 EKYR----PDAIIIDANNTGARTCDYLEMLGYHV 394
KY P I + TG + LG
Sbjct: 296 YKYGTHIAPHDIRVRELGTGKSRLETARSLGIRF 329
>gi|145639982|ref|ZP_01795581.1| terminase, ATPase subunit [Haemophilus influenzae PittII]
gi|145270948|gb|EDK10866.1| terminase, ATPase subunit [Haemophilus influenzae PittII]
gi|309751635|gb|ADO81619.1| Probable bacteriophage terminase, ATPase subunit [Haemophilus
influenzae R2866]
Length = 591
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 55/373 (14%), Positives = 118/373 (31%), Gaps = 68/373 (18%)
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
K + +S ++ A +DV I + + + + T +H
Sbjct: 200 ASKKQALQFRSYIVNYAKQTADVDLKGETIKLPNGAEL--IFLGTNSATAQSYHGN---- 253
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDD 247
+ DE P DV+ G ++ + S P ++ Y + FNK
Sbjct: 254 LYFDEVFWVPKFDVMRKVASGMAAQKMYRQT--YFSTPTTIAHPAYAFFSGKAFNKNRAK 311
Query: 248 -----------------------WKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
WK+ I+ G + + +IA +
Sbjct: 312 ADKVEIDISHENLRIGKLCADRQWKQIVTINDAMEGGCNLFNIDDLIAENSKEE--FEQL 369
Query: 284 VCGQFPQQD-------IDSFIPLNIIEEALNREP---CPDPYAPLIMGCDIAEEGGDNT- 332
QF + ++ +EE + +P P + +G D A G
Sbjct: 370 FLCQFADDNTSAFKFADLQLCQVDSLEEWHDYKPFYQRPFGNREVWLGYDPAFTGDRAAL 429
Query: 333 -VVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
++ + + H + D ++I + Y I+ID G+ +
Sbjct: 430 AIIAPPKVEGGDYRVLHWQTFHGMDYEAQASRIKSFCDDYNVTRIVIDKTGMGSGVFQEV 489
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKSLKSFI 446
+ A+ L++ + + E+ +K + ++ L + + +I + ++K
Sbjct: 490 K---------KFYPMAIGLDYNADLKNEMVLKTQNLIQKRRLKFDGNEIITSFMTVKK-R 539
Query: 447 VPNTGELAIESKR 459
+ TG++ S R
Sbjct: 540 ITGTGKITYVSDR 552
>gi|229845311|ref|ZP_04465443.1| terminase, ATPase subunit [Haemophilus influenzae 6P18H1]
gi|229811764|gb|EEP47461.1| terminase, ATPase subunit [Haemophilus influenzae 6P18H1]
Length = 593
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/374 (14%), Positives = 114/374 (30%), Gaps = 70/374 (18%)
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
K + +S ++ A +DV I + + + + T +H
Sbjct: 200 ASKKQALQFRSYIVNYAKQTADVDLKGETIKLPNGAEL--IFLGTNSATAQSYHGN---- 253
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDD 247
+ DE P DV+ G ++ + S P ++ Y + FN+
Sbjct: 254 LYFDEVFWVPKFDVMRKVASGMAAQKMYRQT--YFSTPTTIAHPAYAFFSGKAFNRNRAK 311
Query: 248 WKRFQIDT------------------------RTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ +ID G + + +IA +
Sbjct: 312 SEKIEIDISHENLKSGKLCADRQWKQIVSIYDAMEGGCNLFNIDDLIAENSKEE--FEQL 369
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV 333
QF + +F ++ ++ Y P + +G D A G +
Sbjct: 370 FLCQFADDNSSAFKFADLQLCQVDSLEEWHDYKPFYQRPFGNREVWLGYDPAFTGDRAAL 429
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
V++ + H + D T ++I E Y I+ID G +
Sbjct: 430 VIVAPPKVEGGDYRVLHKQTFHGMDYETQASRIKQFCEDYNVTRIVIDKTGMGTGVYQEV 489
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL---INHSGLIQNLKSLKS 444
A LE+ + + E+ +K + ++ L + ++ + ++K
Sbjct: 490 R---------KFYPMAQGLEYNADLKNEMVLKTQNLIQKRRLKFDSGDNDIVSSFMTVKK 540
Query: 445 FIVPNTGELAIESK 458
+ TG++ S
Sbjct: 541 -RITGTGKITYVSD 553
>gi|301155044|emb|CBW14507.1| terminase, atpase subunit [Haemophilus parainfluenzae T3T1]
Length = 591
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 53/373 (14%), Positives = 116/373 (31%), Gaps = 68/373 (18%)
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
K + +S ++ A +DV I + + + + T +H
Sbjct: 200 ASKKQALQFRSYIVNYAKQTADVDLKGETIKLPNGAEL--IFLGTNSATAQSYHGN---- 253
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDD 247
+ DE P DV+ G ++ + S P ++ Y + FNK
Sbjct: 254 LYFDEVFWVPKFDVMRKVASGMAAQKMYRQT--YFSTPTTIAHPAYAFFSGKAFNKNRAK 311
Query: 248 WKRFQIDT------------------------RTVEGIDPSFHEGIIARYGLDSDVTRVE 283
+ +ID G + + +IA +
Sbjct: 312 ADKVEIDISHENLKSGKLCADRQWKQIVSIYDAMEGGCNLFNIDDLIAENSKEE--FEQL 369
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNT- 332
QF + +F ++ ++ Y P + +G D A G
Sbjct: 370 FLCQFADDNSSAFKFADLQLCQVDSLEEWHDYKPFYQRPFGNREVWLGYDPAFTGDRAAL 429
Query: 333 -VVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
++ + + H + D ++I + Y I+ID G+ +
Sbjct: 430 AIIAPPKVEGGDYRVLHWQTFHGMDYEAQASRIKSFCDDYNVTRIVIDKTGMGSGVFQEV 489
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKSLKSFI 446
+ A+ L++ + + E+ +K + ++ L + + +I + ++K
Sbjct: 490 K---------KFYPMAIGLDYNADLKNEMVLKTQNLIQKRRLKFDGNEIITSFMTVKK-R 539
Query: 447 VPNTGELAIESKR 459
+ TG++ S R
Sbjct: 540 ITGTGKITYVSDR 552
>gi|163735142|ref|ZP_02142578.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149]
gi|161391600|gb|EDQ15933.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149]
Length = 267
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/265 (16%), Positives = 83/265 (31%), Gaps = 41/265 (15%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
P WQ M + + + + + AG+ + K P
Sbjct: 28 GPPDPWQRSLMNSTSDVIMVLASRRSGKSTTVGVMAGQELAK---------------PDH 72
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
VI L+ + Q L+A+++ F + ++L + L S
Sbjct: 73 QVIILSPTLAQ-SQLLFAKIA-----------FTWEKMALPIETRRRTMTELHLKNGS-- 118
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
S +C ++ + G+ G+ DEA+ PD + L+ N + +
Sbjct: 119 -SVVCVPAGQD-GEGARGYGVKNGIL-AFDEAAFIPDKVFGA---TLSIAEDNAKTVFIT 172
Query: 229 NPRRLSGKFYEIF--NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
P SGK YE++ + + +R + + + + ++ DV G
Sbjct: 173 TPGGKSGKAYEMWTNHDLYPEVERIRACSLDLPRMAKLVARQRKTLSKMEFDVEH----G 228
Query: 287 QFPQQDIDSFIPLNIIEEALNREPC 311
F + I A P
Sbjct: 229 LQWMGRGTPFFDPDTIRAAYTDTPE 253
>gi|146313136|ref|YP_001178210.1| hypothetical protein Ent638_3501 [Enterobacter sp. 638]
gi|145320012|gb|ABP62159.1| protein of unknown function DUF264 [Enterobacter sp. 638]
Length = 589
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 64/229 (27%), Gaps = 32/229 (13%)
Query: 244 PLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W++ I+ G + + +D R +F S P +
Sbjct: 328 PDGQWRQIVTIEDALAGGCTLFNLDQLKQE--NSADDFRNLFMCEFVDDKA-SVFPFEEL 384
Query: 303 EEALNREPCPDP-----------YAPLIMGCDIAEEGGDN--TVVV--LRRGPVIEHL-- 345
+ + + P+ +G D + G V+ L G L
Sbjct: 385 QRCMVDAMEEWEDFEQFADRPFNWRPVWIGYDPSHTGDSAGCAVLAPPLVAGGKFRILER 444
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
W D I L EKY D I IDA G + A
Sbjct: 445 HQWKGMDFAAQAEAIRSLTEKYTVDYIGIDATGIGQGVYQLVR---------SFFPAARA 495
Query: 406 LEFCRNRRTELHVKMADWLEFASLINHSGL--IQNLKSLKSFIVPNTGE 452
+ + +T + +K D + L +G I + ++G
Sbjct: 496 IRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDITQSFMAIRKTMTSSGR 544
>gi|293417393|ref|ZP_06660017.1| terminase [Escherichia coli B185]
gi|291430913|gb|EFF03909.1| terminase [Escherichia coli B185]
Length = 590
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRELTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|258544092|ref|ZP_05704326.1| probable terminase (atpase subunit) related protein
[Cardiobacterium hominis ATCC 15826]
gi|258520720|gb|EEV89579.1| probable terminase (atpase subunit) related protein
[Cardiobacterium hominis ATCC 15826]
Length = 562
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 29/201 (14%)
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--- 307
I+ G D E + ++ + QF D DS + ++ +
Sbjct: 306 ITIEDAINSGFDRVTMEKLRIKF--PPGQFENLLMCQFV-NDTDSIFKMAELQRCMVDAW 362
Query: 308 --------REPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFD--WSKTDL 353
P P AP+ +G D + D ++VV+ G V + ++ D
Sbjct: 363 TLWKDYTPLAPRPLDDAPVWIGYDPSRSQDDASLVVIAPPRVEGGVFRIVDKQSFNGLDF 422
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
KI Y I IDA G D + RA + + +
Sbjct: 423 DGQAQKIREFCAIYNVANIAIDATGIGQAVYDLVRQ---------FYPRARKIIYTVEAK 473
Query: 414 TELHVKMADWLEFASLINHSG 434
E+ +K + L +G
Sbjct: 474 NEMVLKAKQLIHHGRLQWDAG 494
>gi|300022629|ref|YP_003755240.1| hypothetical protein Hden_1105 [Hyphomicrobium denitrificans ATCC
51888]
gi|299524450|gb|ADJ22919.1| protein of unknown function DUF264 [Hyphomicrobium denitrificans
ATCC 51888]
Length = 500
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 71/420 (16%), Positives = 127/420 (30%), Gaps = 68/420 (16%)
Query: 84 AGRGIGKTTLNA-WLVLWLMSTRPGISVIC-------LANSETQLKTTLWAEVSKWLSLL 135
GRG GKT A W+ PG A ++ + L V K L+ +
Sbjct: 104 GGRGSGKTRAGAEWIRGLACGEEPGPRSAAGSRNASRRAPTKESPRIAL---VGKTLADV 160
Query: 136 PNKHWFEMQSL-SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
N L ++HPA V S + +S + + G A
Sbjct: 161 RNVMIEGQSGLLAVHPARERP-VFEPSKRRLIWPNGAVAELFSADEAEALRG---PQFTA 216
Query: 195 IINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DE + + + L +A R +T+ PR ++ + D
Sbjct: 217 AWCDELAKWRNAEKAWDMLQFALRLGDAPR-ACVTTTPRAT-----KLLKSIIADEATVT 270
Query: 253 IDTRTVEG---IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
++ T + + P+F + RY S + R E+ G+ + D + IEEA R
Sbjct: 271 VNLATADNALNLAPTFLAEMTRRY-AGSAIGRQELLGEIVEDASDGLWRRHWIEEA--RV 327
Query: 310 PCPDPYAPLIMGCDI---AEEGGDNTVVV-----LRRGPVIEHLFDWSKTDLRTTNNKIS 361
+++ D A D +V + + +
Sbjct: 328 DAAPEMQRVVVAVDPPVTATAASDACGIVVAGLGVDKRAYVLADRTVQGRTPEIWARAAL 387
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEM--LGYHVYRVLGQKRAVDLEFCRNRRTE---- 415
+ Y D ++ + N G L+ + V +V + R E
Sbjct: 388 SAFDDYEADRMVAEVNQGGDLVVSVLQQFRQNFPVVKVRATRGKW-------VRAEPVAA 440
Query: 416 LHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
L+ + L L + + + G + +S D SD L++
Sbjct: 441 LYAEGRVA-HVGRL---DALEDQMCT-----FGSDGTVK--------GRSPDRSDALVWA 483
>gi|156564098|ref|YP_001429607.1| terminase large subunit [Bacillus phage 0305phi8-36]
gi|154622795|gb|ABS83675.1| terminase large subunit [Bacillus phage 0305phi8-36]
Length = 635
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/206 (16%), Positives = 64/206 (31%), Gaps = 22/206 (10%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
E+ L P+ W E ++ + + + + GR +GKT ++L
Sbjct: 45 EELHYLAILDKPKFWAAETLKWFCRDYQEPMLQEMADSKRTVLRLGRRLGKTETMCIMIL 104
Query: 100 WLMSTRPGIS------VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPW 153
W T+P ++ +A E Q+ ++ +S+ + +S P
Sbjct: 105 WHAFTQPNKGPNNQYDILIIAPYEEQV-DLIFKRLSQLID------------MSGDVNPS 151
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG 213
H L + + + S G I+ DE + I+
Sbjct: 152 RDIDKHIELPNGTVIHGITAGSKSGSGAANTRGQRAD---LIVLDEMDYMGESEITNIMN 208
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYE 239
E I+ S P +Y+
Sbjct: 209 IRNEAPERIKMIVASTPSGRRDSYYK 234
>gi|322420465|ref|YP_004199688.1| hypothetical protein GM18_2968 [Geobacter sp. M18]
gi|320126852|gb|ADW14412.1| hypothetical protein GM18_2968 [Geobacter sp. M18]
Length = 507
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 62/394 (15%), Positives = 109/394 (27%), Gaps = 69/394 (17%)
Query: 38 WGEKGTPLEGFSAPRSW--QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA 95
WG+ S W Q+E + + ++ GR +GK+ + +
Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65
Query: 96 WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
L T G + A + L T + E+ L P+ M S++L +
Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHLDTII-EEIEFQLDTNPD----LMNSIALTKYGKPN 120
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
++ + S + + D F H + DE + + + L
Sbjct: 121 IHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLTERAWKALRQCL 177
Query: 216 TERNANRFWIMTSNPRRL-SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY- 273
R + S P L +Y + D + F+ + ++ Y
Sbjct: 178 KAGGTLRIY---STPNGLRDTTYYRL--TSSDQFHVFRWPSWLNPLWTEDREAELLEFYG 232
Query: 274 GLDSDVTRVEVCGQFPQQDIDSF-----------------IPLNII--------EEALNR 308
G DS + EV G+ + +F I + E A +R
Sbjct: 233 GRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRDCDTEEAAHDR 292
Query: 309 -----EPCPDPYAPLIMGCDIAEEGG-------DNTVVVLRRGPVIEHLFDWSKTDLRTT 356
P + G D+ T + R +
Sbjct: 293 LEMLLNLTPRSGQFWVGG-DLGYTNDPTEIVVFQETEIGERTLLKMILRVHLEHVSYPHI 351
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
I+ L Y P I +D G L L
Sbjct: 352 AQIIALLERYYTPAGIGVDNGGNGLAVVQELLTL 385
>gi|161521371|ref|YP_001584798.1| hypothetical protein Bmul_4835 [Burkholderia multivorans ATCC
17616]
gi|189352462|ref|YP_001948089.1| ATPase subunit of bacteriophage terminase [Burkholderia multivorans
ATCC 17616]
gi|327198040|ref|YP_004306409.1| gp42 [Burkholderia phage KS5]
gi|160345421|gb|ABX18506.1| protein of unknown function DUF264 [Burkholderia multivorans ATCC
17616]
gi|189336484|dbj|BAG45553.1| ATPase subunit of bacteriophage terminase [Burkholderia multivorans
ATCC 17616]
gi|310657174|gb|ADP02289.1| gp42 [Burkholderia phage KS5]
Length = 588
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 20/138 (14%)
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAP------ 317
+ + Y + + QF + S PL +++ + + D + P
Sbjct: 350 NLDRLRLEY--SPEEYANLLLCQFIDDSL-SVFPLTVLQPCMVDTWEVWDDFKPLYLRPF 406
Query: 318 ----LIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D + G VV+ R G L F W D +I L +Y
Sbjct: 407 GDEEVWIGYDPSHTGDSAGCVVIAPPKRPGGKFRVLERFQWHGLDFEAQAAQIEALTRRY 466
Query: 368 RPDAIIIDANNTGARTCD 385
R I ID G
Sbjct: 467 RVTYIGIDTTGIGQGVYQ 484
>gi|168822445|ref|ZP_02834445.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205341120|gb|EDZ27884.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
Length = 594
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + + + RY D+ + F DS + +
Sbjct: 331 PDGQWRYIITLEDAIAGGFNLASIDKLRNRYNRDT--FNMLYMCVFVDSK-DSVFSFSHV 387
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV------VVLRRGPVIEHLF 346
E + + + G D A G +T +V + +F
Sbjct: 388 ERCCVDPDIWEDHDENLPRPFGNREVWAGYDPARSGDTSTFVIIAPPIVAGEKFRVLRVF 447
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
W + + +I L +Y I ID G+ + ++
Sbjct: 448 HWQGMNWKWQAAQIKKLFGQYNMTYIGIDITGLGSGVFEDVQ 489
>gi|323943519|gb|EGB39636.1| terminase [Escherichia coli H120]
Length = 367
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 128 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 184
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 185 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 244
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 245 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 294
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 295 CLEYDVSATDITSSFMAIRKTMTSSGR 321
>gi|78356952|ref|YP_388401.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219357|gb|ABB38706.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 507
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 61/394 (15%), Positives = 108/394 (27%), Gaps = 69/394 (17%)
Query: 38 WGEKGTPLEGFSAPRSW--QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA 95
WG+ S W Q+E + + ++ GR +GK+ + +
Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65
Query: 96 WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
L T G + A + L T + E+ L P+ M S++L
Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHLDTII-EEIEFQLDTNPD----LMNSIALTKYGKPK 120
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
++ + S + + D F H + DE + + + L
Sbjct: 121 IHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLTERAWKALRQCL 177
Query: 216 TERNANRFWIMTSNPRRL-SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY- 273
R + S P L +Y + + + F+ + ++ Y
Sbjct: 178 KAGGTLRIY---STPNGLRDTTYYRL--TSSEQFHVFRWPSWLNPLWTEDREAELLEFYG 232
Query: 274 GLDSDVTRVEVCGQFPQQDIDSF-----------------IPLNII--------EEALNR 308
G DS + EV G+ + +F I + E A +R
Sbjct: 233 GRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRDCDTEEAAHDR 292
Query: 309 -----EPCPDPYAPLIMGCDIAEEGG-------DNTVVVLRRGPVIEHLFDWSKTDLRTT 356
P + G D+ T + R +
Sbjct: 293 LEMLLNLTPRSGQFWVGG-DLGYTNDPTEIVVFQETEIGERTLLKMILRVHLEHVSYPHI 351
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
I+ L Y P I +D G L L
Sbjct: 352 AQIIALLERYYTPAGIGVDNGGNGLAVVQELLTL 385
>gi|197251462|ref|YP_002147591.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197215165|gb|ACH52562.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|312913681|dbj|BAJ37655.1| hypothetical protein STMDT12_C27120 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
Length = 594
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + + + RY D+ + F DS + +
Sbjct: 331 PDGQWRYIITLEDAIAGGFNLASIDKLRNRYNRDT--FNMLYMCVFVDSK-DSVFSFSHV 387
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV------VVLRRGPVIEHLF 346
E + + + G D A G +T +V + +F
Sbjct: 388 ERCCVDPDIWEDHDENLPRPFGNREVWAGYDPARSGDTSTFVIIAPPIVAGEKFRVLRVF 447
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
W + + +I L +Y I ID G+ + ++
Sbjct: 448 HWQGMNWKWQAAQIKKLFGQYNMTYIGIDITGLGSGVFEDVQ 489
>gi|322832199|ref|YP_004212226.1| terminase, ATPase subunit [Rahnella sp. Y9602]
gi|321167400|gb|ADW73099.1| terminase, ATPase subunit [Rahnella sp. Y9602]
Length = 588
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/349 (15%), Positives = 104/349 (29%), Gaps = 67/349 (19%)
Query: 195 IINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPL-- 245
+ DE P+ + G ++ + S P L+ Y E+FNK
Sbjct: 249 LYVDEIFWIPNFQKLRKVASGMASQEHLRTT--YFSTPSALTHGAYPFWSGELFNKGREN 306
Query: 246 ----------------------DDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
W++ I+ G + + + + R
Sbjct: 307 PNDRIELDIGHHSLAKGRLCEDGQWRQIVTIEDALAGGCNLFNIDTLKQENSAED--FRN 364
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDIAEEGGDN 331
+F S P ++ + Y + +G D + G
Sbjct: 365 LFMCEFVDDQ-TSVFPFAELQRCMVESAEEWQDFSPFAVRPFGYRAVWIGYDPSHTGDSA 423
Query: 332 --TVVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
VV L G L W D I L ++Y + I +DA G
Sbjct: 424 GCAVVAPPLVDGGKFRVLERHQWKGMDFAAQAKSIEELTKRYCVEYIGVDATGIGQGVFQ 483
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI---NHSGLIQNLKSL 442
+ A+++ + +T++ +K D + L NH + + ++
Sbjct: 484 LVRQ---------FFPAAMEIRYSPETKTKMVLKAKDTITSGRLEYDTNHKDITSSFMAI 534
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCP 491
+ + + E+ R + A D + +M+ N P + + G+ P
Sbjct: 535 RKTMTASGSRSTYEASRSEEASHADVAWAIMHALL-NEPLTAANGGQSP 582
>gi|154247076|ref|YP_001418034.1| hypothetical protein Xaut_3147 [Xanthobacter autotrophicus Py2]
gi|154161161|gb|ABS68377.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
Length = 416
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 68/415 (16%), Positives = 121/415 (29%), Gaps = 68/415 (16%)
Query: 82 ISAGRGIGKTTLNA-WLVLWLM-----STRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ GRG GKT A W+ + + RP + +A + ++ + VS L++
Sbjct: 31 VLGGRGAGKTRAGAEWVRGLALGRPPFAGRPVGRIALVAETMADVREVMVEGVSGLLAVH 90
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P + + + +S E P++ G A
Sbjct: 91 PRAERPRWEPTR---------------RRLEWANGAVAQGFSAEDPESLRG---PQFAAA 132
Query: 196 INDEASGTPDVINLGILGFLTERNANRFW-----IMTSNPRRLSGKFYEIFNKPLDDWKR 250
DE + M + R + + P R
Sbjct: 133 WLDELAK-----WKRAEATFDMLQFGLRLGAQPRQMVTTTPRPTALLRRLLADPSTAVTR 187
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ + PSF ++ RYG + R E+ G+ + D+ +E RE
Sbjct: 188 AR-TADNAFHLAPSFLGQVLTRYGGT-RLGRQELDGELIEDRADALFSRPALEAL--REA 243
Query: 311 CPDPYAPLIMGCDI---AEEGGDNTVVV---LRRGPVIEHLFDWSKTDLRTT--NNKISG 362
P +++ D + G D +V + V+ L D S LR K
Sbjct: 244 QVPPLTRIVVAVDPPASSRAGADACGIVCAGMDATGVVHVLADDSAAGLRPAQWAAKAVA 303
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEM--LGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
L ++ D I+ + N G + G V +V + R E +
Sbjct: 304 LFRRFEADLIVAEVNQGGEMVRAVIAEVDDGVPVEQVRATRGKF-------LRAEPVAAL 356
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ L + G + S +S D D L++
Sbjct: 357 YEQGRVRHAGAFPALEDEMC-----DFGTDG---LSS-----GRSPDRLDALVWA 398
>gi|307315386|ref|ZP_07594955.1| protein of unknown function DUF264 [Escherichia coli W]
gi|307315408|ref|ZP_07594975.1| protein of unknown function DUF264 [Escherichia coli W]
gi|306905258|gb|EFN35804.1| protein of unknown function DUF264 [Escherichia coli W]
gi|306905260|gb|EFN35805.1| protein of unknown function DUF264 [Escherichia coli W]
Length = 385
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 58/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + D + +F S P ++ +
Sbjct: 146 IEQLKRENSADD--FKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 202
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 203 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 262
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 263 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 312
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 313 CLEYDVSATDITSSFMAIRKTMTSSGR 339
>gi|289805729|ref|ZP_06536358.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 257
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 5/167 (2%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQ 252
+ +EA + + + + + ++ NP ++ + P +D +
Sbjct: 82 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEDTLIRK 139
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D + G D + I L+ IE A++ +
Sbjct: 140 INYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 199
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTN 357
P +G D+A+ G D V R G VI +W +
Sbjct: 200 DFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDELLK 246
>gi|213618708|ref|ZP_03372534.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 282
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 5/163 (3%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEIFNKPLDDWKRFQ 252
+ +EA + + + + + ++ NP ++ + P +D +
Sbjct: 122 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEDTLIRK 179
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D + G D + I L+ IE A++ +
Sbjct: 180 INYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVL 239
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
P +G D+A+ G D V R G VI +W +
Sbjct: 240 DFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKED 282
>gi|323973818|gb|EGB68992.1| terminase [Escherichia coli TA007]
Length = 589
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/196 (17%), Positives = 55/196 (28%), Gaps = 29/196 (14%)
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDI 324
+D R +F S P ++ + + P+ +G D
Sbjct: 359 SADDFRNLFMCEFVDDKA-SVFPFEELQRCMVDAMEEWEDFEPFADRPFNWRPVWIGYDP 417
Query: 325 AEEGGDN--TVVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
+ G V+ L G L W D I L EKY D I IDA
Sbjct: 418 SHTGDSAGCAVLAPPLVAGGKFRILERHQWKGMDFAAQAEAIRALTEKYTVDYIGIDATG 477
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL--I 436
G + A + + +T + +K D + L +G I
Sbjct: 478 IGQGVYQLVR---------SFFPAARAIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDI 528
Query: 437 QNLKSLKSFIVPNTGE 452
+ N+G
Sbjct: 529 TQSFMAIRKTMTNSGR 544
>gi|261340099|ref|ZP_05967957.1| terminase, ATPase subunit [Enterobacter cancerogenus ATCC 35316]
gi|288318026|gb|EFC56964.1| terminase, ATPase subunit [Enterobacter cancerogenus ATCC 35316]
Length = 589
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/196 (17%), Positives = 55/196 (28%), Gaps = 29/196 (14%)
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDI 324
+D R +F S P ++ + + P+ +G D
Sbjct: 359 SADDFRNLFMCEFVDDKA-SVFPFEELQRCMVDAMEEWEDFEPFADRPFNWRPVWIGYDP 417
Query: 325 AEEGGDN--TVVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
+ G V+ L G L W D I L EKY D I IDA
Sbjct: 418 SHTGDSAGCAVLAPPLVAGGKFRILERHQWKGMDFAAQAEAIRALTEKYTVDYIGIDATG 477
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL--I 436
G + A + + +T + +K D + L +G I
Sbjct: 478 IGQGVYQLVR---------SFFPAARAIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDI 528
Query: 437 QNLKSLKSFIVPNTGE 452
+ ++G
Sbjct: 529 TQSFMAIRKTMTSSGR 544
>gi|218558996|ref|YP_002391909.1| Terminase, ATPase subunit (GpP) [Escherichia coli S88]
gi|218365765|emb|CAR03503.1| Terminase, ATPase subunit (GpP) [Escherichia coli S88]
Length = 600
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 361 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 417
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 418 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 477
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 478 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 527
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 528 CLEYDVSATDITSSFMAIRKTMTSSGR 554
>gi|212709268|ref|ZP_03317396.1| hypothetical protein PROVALCAL_00303 [Providencia alcalifaciens DSM
30120]
gi|212688180|gb|EEB47708.1| hypothetical protein PROVALCAL_00303 [Providencia alcalifaciens DSM
30120]
Length = 585
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 58/165 (35%), Gaps = 24/165 (14%)
Query: 246 DDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
W++ ++ G D E + Y D + +F DI S L ++++
Sbjct: 324 GQWRQIVTVEDAIRGGCDLFEIEQLSLEY--SPDEFENLLMCEFVD-DIASIFNLQLMQK 380
Query: 305 ALNRE-----------PCPDPYAPLIMGCDIAE--EGGDN--TVVV---LRRGPVIEHLF 346
+ P Y P+ +G D A+ + GD+ VVV LR G L
Sbjct: 381 CMVDSWEVWNDVQPLMVRPYAYHPVWIGYDPAKGTQNGDSAGCVVVAPPLRAGDKFRILE 440
Query: 347 D--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
W D R N I L E+Y I ID+ G +
Sbjct: 441 HHQWRGMDFRAQANAIKELTERYNVQYIGIDSTGIGHGVLQNVRD 485
>gi|194444881|ref|YP_002043300.1| hypothetical protein SNSL254_A4364 [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194403544|gb|ACF63766.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
Length = 589
Score = 59.0 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 71/230 (30%), Gaps = 34/230 (14%)
Query: 244 PLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W++ I+ +G + + +D R +F S P +
Sbjct: 328 PDGQWRQIVTIEDALAKGCTLFNIDTLKRENSVDE--FRNLFMCEFVDDKA-SVFPFEEL 384
Query: 303 EEALNR-----------EPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL-- 345
+ + P + P+ +G D + G VV+ G L
Sbjct: 385 QRCMVDSLEKWEDYAPFADRPFGHRPVWIGYDPSLRGDSAGCVVIAPPVVAGGKFRILER 444
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
W D I L +KY + I IDA G + A +
Sbjct: 445 HQWKGMDFAQQAESIRELTQKYTVEYIGIDATGLGQGVFQLVR---------SFYPAARE 495
Query: 406 LEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGE 452
+ + +T + +K D + L + + Q+ S++ + ++G
Sbjct: 496 IRYTPEMKTAMVLKAKDTIRRGCLEYDVSATDITQSFMSIRK-TMTSSGR 544
>gi|154248423|ref|YP_001419381.1| hypothetical protein Xaut_4503 [Xanthobacter autotrophicus Py2]
gi|154162508|gb|ABS69724.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
Length = 457
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 68/240 (28%), Gaps = 20/240 (8%)
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRR 232
T PDT G + DE + D I + +++ TS P
Sbjct: 113 TALPANPDTARGFSAN----VFLDEFAIHKDSKAIWGALFPVISKNGLRLRV--TSTPNG 166
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
KFYEI + W R +D + D D+ E ++ +
Sbjct: 167 KGNKFYEIMTAADEVWSRHVVDIYQAVADGLPRDIDELRAGLADDDLWAQEYELKWLDEA 226
Query: 293 ID----SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEH 344
I E A +P +G DI D V+ +
Sbjct: 227 SAWLSYDLISSCEDERA--GDPALYQGGVCFVGRDIGRRQ-DLHVIWVWEQVGDVLWERE 283
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC-DYLEMLGYHVYRVLGQKRA 403
+ + ++ ++ +YR ID G + D G V VL +
Sbjct: 284 RIEQKRATFAEMDDAFDDIMVRYRVGRACIDQTGMGEKVVEDAQRRWGSRVEGVLFTGPS 343
>gi|225220117|ref|YP_002720084.1| phage terminase large subunit [Enterobacteria phage SSL-2009a]
gi|224986058|gb|ACN74622.1| phage terminase large subunit [Enterobacteria phage SSL-2009a]
Length = 461
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 66/336 (19%), Positives = 117/336 (34%), Gaps = 48/336 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+G G GK+ + A V+ L++ PG I + L ++ E+ K + F
Sbjct: 58 SGFGGGKSWVAARKVIQLLTLNPGYDGIVTEPTIPLLVKIMYPELEKAFDEAGFRWKFNK 117
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q D ++ L + K +C S E +G + + I+ DE T
Sbjct: 118 Q-----------DKIYNVL-VKGKWTRVICE--SMENYTRLIGVNAAW---IVADEFDTT 160
Query: 204 PDVINLGILGFLTER---NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR-FQIDTRTVE 259
+ + L R R +++ S P Y+IF KR + T
Sbjct: 161 KQDVAMAAYHKLLGRLRAGFVRQFVIVSTPEGYRAM-YQIFEVEKGSQKRLIRAKTTDNH 219
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ F + + ++Y +++ + G F + + E + E P LI
Sbjct: 220 HLPADFIDTLRSQY--PANLIDAYLNGLFVNLTSGAVYKMFNREGNASTEE-VHPDDTLI 276
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--------TDLRTTNNKISGLVEKYR--- 368
+G D VV +RR I ++ DL T I + E+Y
Sbjct: 277 IGMDFNVTKM-AAVVYVRR-QRITENKEFRDEIHAVDEFVDLFDTPAMIEAIEERYPEHC 334
Query: 369 -PDAIII--DANN-----TGARTCD--YLEMLGYHV 394
+++ D++ A + D LE G+ V
Sbjct: 335 AAGRVVVYPDSSGKSRKTVNASSSDIAQLEDAGFEV 370
>gi|326783087|ref|YP_004323484.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM2]
gi|310005505|gb|ADO99893.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM2]
Length = 560
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 72/414 (17%), Positives = 135/414 (32%), Gaps = 65/414 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+Q E +E H N P GK+T +L + ++V
Sbjct: 60 DFQQELIESFHEHRFNIAKLPRQ------------TGKSTTCVSYLLHYILFNDNVNVGI 107
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
LAN + + L S+ + Q + ++ + L SK
Sbjct: 108 LANKLSTARDLL----SRLQLAYEQLPLWIQQGIVVY------NKGSMELENGSK-ILAA 156
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI----NLGILGFLTERNANRFWIMTS 228
+ S R +F I DE + P+ I + +T + I+ S
Sbjct: 157 STSASAVRGMSFN--------IIFLDEFAFIPNHIAEQFFSSVYPTITS-GTSTKVIIIS 207
Query: 229 NPRRLSGKFYEIF---NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
P ++ FY+++ K + + ++ V G D + E IA E
Sbjct: 208 TPNGMN-HFYKLWVDAQKGRNGYAWNEVHWSKVPGRDAKWKEQTIANTSERQ--FTQEFD 264
Query: 286 GQFPQQDIDSFIPLNIIEE-----------ALNREPCPDPYAPLIMGCDIAEE--GGDNT 332
+F +D+ I + + +L+ P I+ D++ +
Sbjct: 265 CEFL-GSVDTLITASKLRVLTYDDVMTTNGSLDIYEKPIDKHEYIITVDVSRGLAQDYSA 323
Query: 333 VVVLRRGPVIEHLF-DWSKTDLRTT--NNKISGLVEKYRPDAIIIDANNTGARTCD---- 385
VV+ L + D+R N I + Y ++ + N+ G
Sbjct: 324 FVVIDITHAPWRLVAKYRDKDVRPMLFPNIIFNVATNYNKAYVLTEVNDIGEAVAGSLFY 383
Query: 386 YLEMLGYHVYRVLG-QKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
LE + + G + V F N+ T++ VKM+ ++ N LI++
Sbjct: 384 DLEYENTLMCAMRGRAGQIVGQGFSGNK-TQMGVKMSKTVKAQGCSNLKTLIED 436
>gi|322662586|gb|EFY58794.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
Length = 280
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + + P
Sbjct: 40 LDQLRMEY--SPDEYQNLLMCEFID-DLASVFPLSELQACMVDSWEVWTDFQSLALRPFG 96
Query: 315 YAPLIMGCDIAEE---GGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ G VV+ G L W D R + I L +
Sbjct: 97 WREVWIGYDPAKGTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 156
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 157 QYNVTYIGIDSTGVGHGVYENVK 179
>gi|323183894|gb|EFZ69285.1| terminase, ATPase subunit [Escherichia coli 1357]
Length = 590
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|320180747|gb|EFW55673.1| Phage terminase, ATPase subunit [Shigella boydii ATCC 9905]
gi|323167352|gb|EFZ53060.1| terminase, ATPase subunit [Shigella sonnei 53G]
Length = 590
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 60/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F + S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKV-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|117623093|ref|YP_852006.1| putative phage terminase [Escherichia coli APEC O1]
gi|117624286|ref|YP_853199.1| Phage protein P [Escherichia coli APEC O1]
gi|115512217|gb|ABJ00292.1| putative phage terminase [Escherichia coli APEC O1]
gi|115513410|gb|ABJ01485.1| Phage protein P [Escherichia coli APEC O1]
Length = 590
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|331675382|ref|ZP_08376132.1| terminase, ATPase subunit (GpP) [Escherichia coli TA280]
gi|331067442|gb|EGI38847.1| terminase, ATPase subunit (GpP) [Escherichia coli TA280]
Length = 590
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSTDDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|330967816|gb|EGH68076.1| hypothetical protein PSYAC_24858 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 774
Score = 58.6 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 51/163 (31%), Gaps = 20/163 (12%)
Query: 244 PLDDWKR-FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W++ I G D E + Y D D + +F +F L +
Sbjct: 343 PDGQWRKVITILDAISGGCDLFDLEQLQLEY--DEDKFQQLFMCKFIDSSQSAF-SLADL 399
Query: 303 EEALNR----------EPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEHLFD- 347
E + +P +P+ +G D + D T VV L G L
Sbjct: 400 ERCYSDLSLWADFDPDDPRLYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKH 459
Query: 348 -WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
W + ++ L E++ I ID G D +
Sbjct: 460 SWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGVFDLVRD 502
>gi|294634584|ref|ZP_06713119.1| terminase, ATPase subunit [Edwardsiella tarda ATCC 23685]
gi|291092098|gb|EFE24659.1| terminase, ATPase subunit [Edwardsiella tarda ATCC 23685]
Length = 588
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 44/134 (32%), Gaps = 17/134 (12%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE----ALNREPCPDPYA------PLIMG 321
+ +D + +F S P ++ AL +PYA P+ +G
Sbjct: 355 KRENSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDALEAWTDVNPYADHPFDRPVWIG 413
Query: 322 CDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
D + G VVL G L W D T I L EKYR D I ID
Sbjct: 414 YDPSHTGDSAGCVVLAPPAVPGGKFRMLERHQWKGMDFSTQAEAIRALTEKYRVDYIGID 473
Query: 376 ANNTGARTCDYLEM 389
A G +
Sbjct: 474 ATGIGQGVFQLVRE 487
>gi|323936689|gb|EGB32974.1| terminase [Escherichia coli E1520]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFATNPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|210062534|gb|ACJ06274.1| probable terminase subunit [Photorhabdus luminescens]
Length = 585
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE-----------PCPDP 314
+ + Y D + + +F DI+S L +++ + P
Sbjct: 345 IDQLRLEY--SPDEYQNLLMCEF-MDDIESIFSLQLMQGCMVDSWEIWDDVQPLMLRPYG 401
Query: 315 YAPLIMGCDIAEEG--GDNT---VVVLRR--GPVIEHL--FDWSKTDLRTTNNKISGLVE 365
Y P+ +G D A+ G GD+ VV R G L W + R ++ I L E
Sbjct: 402 YHPVWIGYDPAKGGENGDSAGCVVVAPPRVPGDKFRILERHQWRGMNFRAQSDAIKRLTE 461
Query: 366 KYRPDAIIIDANNTGARTCDYLEM 389
+Y + I ID+ G ++
Sbjct: 462 QYNVEYIGIDSTGVGHGVYQNVKE 485
>gi|324113792|gb|EGC07767.1| terminase [Escherichia fergusonii B253]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFATNPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|332088966|gb|EGI94078.1| terminase, ATPase subunit [Shigella boydii 5216-82]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|323961666|gb|EGB57270.1| terminase [Escherichia coli H489]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|294494147|gb|ADE92903.1| terminase, ATPase subunit [Escherichia coli IHE3034]
gi|323951869|gb|EGB47743.1| terminase [Escherichia coli H252]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|254039145|ref|ZP_04873195.1| terminase [Escherichia sp. 1_1_43]
gi|226838581|gb|EEH70610.1| terminase [Escherichia sp. 1_1_43]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|30065706|ref|NP_839851.1| gpP [Yersinia phage L-413C]
gi|300947250|ref|ZP_07161455.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|301022960|ref|ZP_07186775.1| conserved hypothetical protein [Escherichia coli MS 69-1]
gi|331678021|ref|ZP_08378696.1| terminase, ATPase subunit (GpP) [Escherichia coli H591]
gi|30025900|gb|AAP04439.1| gpP [Yersinia phage L-413C]
gi|33413700|gb|AAN28220.1| gpP [Enterobacteria phage WPhi]
gi|300397301|gb|EFJ80839.1| conserved hypothetical protein [Escherichia coli MS 69-1]
gi|300453115|gb|EFK16735.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|315061386|gb|ADT75713.1| terminase, ATPase subunit [Escherichia coli W]
gi|315063221|gb|ADT77548.1| phage large terminase subunit [Escherichia coli W]
gi|323380714|gb|ADX52982.1| phage large terminase subunit GpP [Escherichia coli KO11]
gi|325499372|gb|EGC97231.1| Terminase, ATPase subunit (GpP) [Escherichia fergusonii ECD227]
gi|331074481|gb|EGI45801.1| terminase, ATPase subunit (GpP) [Escherichia coli H591]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|323378035|gb|ADX50303.1| phage large terminase subunit GpP [Escherichia coli KO11]
Length = 589
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 350 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 406
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 407 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 466
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 467 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 516
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 517 CLEYDVSATDITSSFMAIRKTMTSSGR 543
>gi|315296184|gb|EFU55492.1| conserved hypothetical protein [Escherichia coli MS 16-3]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|213646682|ref|ZP_03376735.1| Phage protein P [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|9630329|ref|NP_046758.1| gpP [Enterobacteria phage P2]
gi|168789033|ref|ZP_02814040.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC869]
gi|188492656|ref|ZP_02999926.1| phage large terminase subunit GpP [Escherichia coli 53638]
gi|261225041|ref|ZP_05939322.1| Terminase, ATPase subunit (GpP) [Escherichia coli O157:H7 str.
FRIK2000]
gi|261257612|ref|ZP_05950145.1| Terminase, ATPase subunit (GpP) [Escherichia coli O157:H7 str.
FRIK966]
gi|301048706|ref|ZP_07195715.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|139354|sp|P25479|VPP_BPP2 RecName: Full=Terminase, ATPase subunit; AltName: Full=GpP
gi|3139088|gb|AAD03269.1| gpP [Enterobacteria phage P2]
gi|188487855|gb|EDU62958.1| phage large terminase subunit GpP [Escherichia coli 53638]
gi|189371250|gb|EDU89666.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC869]
gi|300299452|gb|EFJ55837.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|324020535|gb|EGB89754.1| hypothetical protein HMPREF9542_00768 [Escherichia coli MS 117-3]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|320196848|gb|EFW71470.1| Phage terminase, ATPase subunit [Escherichia coli WV_060327]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|170683976|ref|YP_001746268.1| phage large terminase subunit GpP [Escherichia coli SMS-3-5]
gi|170521694|gb|ACB19872.1| phage large terminase subunit GpP [Escherichia coli SMS-3-5]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|170769222|ref|ZP_02903675.1| phage large terminase subunit GpP [Escherichia albertii TW07627]
gi|170121874|gb|EDS90805.1| phage large terminase subunit GpP [Escherichia albertii TW07627]
Length = 590
Score = 58.6 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/184 (17%), Positives = 51/184 (27%), Gaps = 29/184 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRGC 518
Query: 429 LINH 432
L
Sbjct: 519 LEYD 522
>gi|18466735|ref|NP_569542.1| hypothetical protein HCM2.0070c [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16506051|emb|CAD09937.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
Length = 418
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/335 (14%), Positives = 106/335 (31%), Gaps = 46/335 (13%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ +V H +P FK + AGR GK+ L+ ++ + V +A +
Sbjct: 7 LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ LW ++ + L P W ++ I K+ S +
Sbjct: 66 MARQILWDDLQEVL-----------------PRKWVRKKNDTTMTIVLKNGSEIALK-GA 107
Query: 179 ERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
++PDT G ++ DE PD + L+ ++ P+ +F
Sbjct: 108 DKPDTLRGV---ALHFVVLDEFQDMKPDTWYKVLRPTLSS--TRGGALIIGTPKG-FSEF 161
Query: 238 YEIFN-------KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
++++ + WK +Q T + + E +D E F
Sbjct: 162 HKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKND--MDPKSFAQEYLASFEN 219
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK 350
+ P + + +P P+ +G D D V+ + L+ +
Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPKLPIWVGQD---FNIDPMSSVILQPQPNGELWAVDE 274
Query: 351 -----TDLRTTNNKISGLVEKYRPD-AIIIDANNT 379
++ +++ +++ I D
Sbjct: 275 VVLFSSNTAEVCDELERRFWRWKSQVTIFPDPAGA 309
>gi|16082806|ref|NP_395360.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
gi|31795361|ref|NP_857813.1| hypothetical protein Y1030 [Yersinia pestis KIM]
gi|40787951|ref|NP_857660.2| hypothetical protein YPKMT021 [Yersinia pestis KIM]
gi|45478613|ref|NP_995469.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
str. 91001]
gi|52788073|ref|YP_093901.1| hypothetical protein pG8786_021 [Yersinia pestis]
gi|108793557|ref|YP_636707.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
gi|108793757|ref|YP_636595.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
gi|145597216|ref|YP_001154679.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
gi|149192775|ref|YP_001294006.1| hypothetical protein YPE_4292 [Yersinia pestis CA88-4125]
gi|162417876|ref|YP_001604588.1| hypothetical protein YpAngola_0076 [Yersinia pestis Angola]
gi|165939469|ref|ZP_02228016.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166214433|ref|ZP_02240468.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167402343|ref|ZP_02307808.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167422791|ref|ZP_02314544.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167466683|ref|ZP_02331387.1| hypothetical protein YpesF_02065 [Yersinia pestis FV-1]
gi|229896952|ref|ZP_04512111.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
gi|229897756|ref|ZP_04512911.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229900293|ref|ZP_04515428.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904817|ref|ZP_04519927.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
gi|270491004|ref|ZP_06208077.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
D27]
gi|294502015|ref|YP_003565752.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
gi|3883031|gb|AAC82691.1| unknown [Yersinia pestis KIM 10]
gi|5834709|emb|CAB55206.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
gi|45357266|gb|AAS58660.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
str. 91001]
gi|52538002|emb|CAG27427.1| hypothetical protein [Yersinia pestis]
gi|108777821|gb|ABG20339.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
gi|108782104|gb|ABG16161.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
gi|145212984|gb|ABP42389.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
gi|148872433|gb|ABR14922.1| hypothetical protein YPMT1.24c [Yersinia pestis CA88-4125]
gi|162350848|gb|ABX84797.1| conserved hypothetical protein [Yersinia pestis Angola]
gi|165912657|gb|EDR31287.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166204381|gb|EDR48861.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166958284|gb|EDR55305.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048235|gb|EDR59643.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|229678132|gb|EEO74238.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
gi|229686652|gb|EEO78733.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229693337|gb|EEO83387.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229699988|gb|EEO88028.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
gi|262363909|gb|ACY60628.1| hypothetical protein YPD4_pMT0023 [Yersinia pestis D106004]
gi|262364065|gb|ACY64401.1| hypothetical protein YPD8_pMT0023 [Yersinia pestis D182038]
gi|270334985|gb|EFA45763.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
D27]
gi|294352486|gb|ADE66542.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
gi|320017547|gb|ADW01117.1| hypothetical protein YPC_4788 [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 418
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/335 (14%), Positives = 106/335 (31%), Gaps = 46/335 (13%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ +V H +P FK + AGR GK+ L+ ++ + V +A +
Sbjct: 7 LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ LW ++ + L P W ++ I K+ S +
Sbjct: 66 MARQILWDDLQEVL-----------------PRKWVRKKNDTTMTIVLKNGSEIALK-GA 107
Query: 179 ERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
++PDT G ++ DE PD + L+ ++ P+ +F
Sbjct: 108 DKPDTLRGV---ALHFVVLDEFQDMKPDTWYKVLRPTLSS--TRGGALIIGTPKG-FSEF 161
Query: 238 YEIFN-------KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
++++ + WK +Q T + + E +D E F
Sbjct: 162 HKLWTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKND--MDPKSFAQEYLASFEN 219
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK 350
+ P + + +P P+ +G D D V+ + L+ +
Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPKLPIWVGQD---FNIDPMSSVILQPQPNGELWAVDE 274
Query: 351 -----TDLRTTNNKISGLVEKYRPD-AIIIDANNT 379
++ +++ +++ I D
Sbjct: 275 VVLFSSNTAEVCDELERRFWRWKSQVTIFPDPAGA 309
>gi|324115403|gb|EGC09352.1| terminase [Escherichia coli E1167]
Length = 572
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 357 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 413
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 414 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 473
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 474 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 523
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 524 CLEYDVSATDITSSFMAIRKTMTSSGR 550
>gi|302343251|ref|YP_003807780.1| hypothetical protein Deba_1821 [Desulfarculus baarsii DSM 2075]
gi|301639864|gb|ADK85186.1| conserved hypothetical protein [Desulfarculus baarsii DSM 2075]
Length = 507
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 63/394 (15%), Positives = 109/394 (27%), Gaps = 69/394 (17%)
Query: 38 WGEKGTPLEGFSAPRSW--QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA 95
WG+ S W Q+E + + ++ GR +GK+ + +
Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65
Query: 96 WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
L T G + A + L T + E+ L P+ M S++L
Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHLDTII-EEIEFQLDTNPD----LMNSIALTKYGKPK 120
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
++ + S + + D F H + DE + + + L
Sbjct: 121 IHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLTERAWKALRQCL 177
Query: 216 TERNANRFWIMTSNPRRL-SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY- 273
R + S P L +Y + D + F+ + ++ Y
Sbjct: 178 KAGGTLRIY---STPNGLRDTTYYRL--TSSDQFHVFRWPSWLNPLWTEDREAELLEFYG 232
Query: 274 GLDSDVTRVEVCGQFPQQDIDSF-----------------IPLNII--------EEALNR 308
G DS + EV G+ + +F I + E A +R
Sbjct: 233 GRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSEMRDCDTEEAAHDR 292
Query: 309 -----EPCPDPYAPLIMGCDIAEEGGDNTVVVL-------RRGPVIEHLFDWSKTDLRTT 356
P + G D+ +VV R +
Sbjct: 293 LEMLLNLTPRSGQFWVGG-DLGYTNDPTEIVVFQEMEIGERTLLKMILRVHLEHVSYPHI 351
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
I+ L Y P I +D G L L
Sbjct: 352 AQIIALLERYYTPAGIGVDNGGNGLAVVQELLTL 385
>gi|300715671|ref|YP_003740474.1| Terminase, ATPase [Erwinia billingiae Eb661]
gi|299061507|emb|CAX58621.1| Terminase, ATPase subunit [Erwinia billingiae Eb661]
Length = 588
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 23/144 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y + + +F D+ S PL ++ + P
Sbjct: 348 IDQLRLEY--SPPEYQNLLMCEFID-DLASVFPLADLQACMVDSWEVWQDFEALALRPFG 404
Query: 315 YAPLIMGCDIAEE---GGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ G VV+ G L W D R + I L
Sbjct: 405 WREVWIGYDPAKGTQHGDSAGCVVIAPPSVPGGKFRILERHQWRGMDFRAQADAIKELTR 464
Query: 366 KYRPDAIIIDANNTGARTCDYLEM 389
+Y I ID+ G + ++M
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVKM 488
>gi|221633560|ref|YP_002522786.1| hypothetical protein trd_1584 [Thermomicrobium roseum DSM 5159]
gi|221155562|gb|ACM04689.1| conserved hypothetical protein [Thermomicrobium roseum DSM 5159]
Length = 489
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 53/352 (15%), Positives = 96/352 (27%), Gaps = 55/352 (15%)
Query: 89 GKTTLNAWLVLWLMSTRP--GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
GK A + WL+ G V+ S +L + + +
Sbjct: 65 GKDEALAQFLAWLLLRFHRRGGEVVVALPSWR-----------PQGALARERLLAVLAAP 113
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
L + G + R S G T + ++ +EA
Sbjct: 114 RLAALLAGLGLAPEVAGARVALGRAVVRYASAGPSANVRGL--TASLLLVANEAQDIAPD 171
Query: 207 INLGILGFLTERNANRFWIMTSNPRRLSG------KFYEIFNKPLDDWKRFQIDTRTVEG 260
+ + + P ++ + + +++ TV
Sbjct: 172 RWDSAFAPMA-ASTGAPALYLGTPWGSDSLLARELRYLTALERQDGQQRVWRVPWTTVAA 230
Query: 261 IDPSF---HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC---PDP 314
P++ +A+ G R E G P + P P P
Sbjct: 231 ELPAYGDHVRERMAQLGAGHPFVRTEY-GLEELAGEGRLFPPERLALVRGDHPALLAPRP 289
Query: 315 YAPLIMGCDIAEEGGDN-------------------TVVVLRRGPVIEHLFDWS----KT 351
+ D+A G D TVV + G + + W
Sbjct: 290 GERYALTVDVA--GEDEASAGELRDDPGARRDATALTVVRVVPGTLPRYEAVWRARWVGA 347
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKR 402
+ + L +R + +++DA+ GA +LE LG V RV+ R
Sbjct: 348 RQVRQHEALVQLARAWRAERVVVDASGVGAGLAAFLEHALGERVRRVVFSPR 399
>gi|307826152|ref|ZP_07656363.1| protein of unknown function DUF264 [Methylobacter tundripaludum
SV96]
gi|307732791|gb|EFO03657.1| protein of unknown function DUF264 [Methylobacter tundripaludum
SV96]
Length = 598
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/261 (16%), Positives = 78/261 (29%), Gaps = 52/261 (19%)
Query: 189 NTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIF 241
+ +G + DE PD + G + R S P +S + Y E +
Sbjct: 261 SYHGHLYV-DECFWIPDFDKMWKVASGMAAHKKWRRTL--FSTPSAISHQAYPMWCGEKY 317
Query: 242 NKPLDDWKRFQIDT------------------------RTVEGIDPSFHEGIIARYGLDS 277
N+ D K+ + D +G D + + Y D
Sbjct: 318 NQGKADDKKAEFDVSHAALKDGLMGADKIWRHMVTVVDAEAQGCDLFDIDELQDEYSKDD 377
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE---------PCPDPYAPLIMGCDIAEEG 328
+F D S L I+ RE P P P+ +G D +
Sbjct: 378 --FANLFMCKFID-DAKSVFNLGIMMTCYAREDYTDYNDKAPRPYGNRPVAIGYDPSRTR 434
Query: 329 GDNT----VVVLRRG--PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
+ + + LR G + D+ + + N+I +V+ + + ID G
Sbjct: 435 DNASLAILAIPLRPGDKWRVLKTMDFHGQNFQYQANRIKEIVDSHNVQHVGIDVTGIGYG 494
Query: 383 TCDYLEMLGYHVYRVLGQKRA 403
+ +E V +
Sbjct: 495 LFELVEQFYRRVTPINYSNET 515
>gi|318064508|gb|ADV36483.1| phage terminase large subunit [Edwardsiella phage eiDWF]
gi|318064606|gb|ADV36532.1| phage terminase large subunit [Edwardsiella phage eiMSLS]
Length = 460
Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 63/346 (18%), Positives = 113/346 (32%), Gaps = 38/346 (10%)
Query: 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS 103
P++ R+W+++ + H +N+ ++ +G G GKT A + L
Sbjct: 27 PVKKERKSRTWRIKTL----PHQRGLINDTTTKILGLC--SGFGGGKTWSAARKAVQLAI 80
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
PG I + L ++ E+ K L+ K F Q H
Sbjct: 81 LNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQDKIYHC------------R 128
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG---ILGFLTERNA 220
I + +C S E +G + + + D PD+ +LG L N
Sbjct: 129 IAGQMTRIICD--SMENYTRLIGVNAAWCVCDEFDTTK--PDIAMEAYRKLLGRLRTGNV 184
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKR-FQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
+ I S P Y+IF DD KR + T + + + + A+Y ++
Sbjct: 185 RQMVI-VSTPEGFRAM-YQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQY--PPEL 240
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
+ G+F + N N + + L++G D V V R
Sbjct: 241 IEAYLNGEFVNLTGGAVY-RNFSRTLNNCDTVAEDDDTLMIGMDFNVGQMAGAVYVQRIA 299
Query: 340 PVIEHLFDWSKT----DLRTTNNKISGLVEKYRP---DAIIIDANN 378
+E + + D + I + I D++
Sbjct: 300 DGVEEMHLVDEFCGLLDTDAMIDAIKERYPDHHARGLIEIFPDSSG 345
>gi|318064394|gb|ADV36428.1| phage terminase large subunit [Edwardsiella phage eiAU]
Length = 460
Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 63/346 (18%), Positives = 113/346 (32%), Gaps = 38/346 (10%)
Query: 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS 103
P++ R+W+++ + H +N+ ++ +G G GKT A + L
Sbjct: 27 PVKKERKSRTWRIKTL----PHQRGLINDTTTKILGLC--SGFGGGKTWSAARKAVQLAI 80
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
PG I + L ++ E+ K L+ K F Q H
Sbjct: 81 LNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQDKIYHC------------R 128
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG---ILGFLTERNA 220
I + +C S E +G + + + D PD+ +LG L N
Sbjct: 129 IAGQMTRIICD--SMENYTRLIGVNAAWCVCDEFDTTK--PDIAMEAYRKLLGRLRTGNV 184
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKR-FQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
+ I S P Y+IF DD KR + T + + + + A+Y ++
Sbjct: 185 RQMVI-VSTPEGFRAM-YQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQY--PPEL 240
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
+ G+F + N N + + L++G D V V R
Sbjct: 241 IEAYLNGEFVNLTGGAVY-RNFSRTLNNCDTVAEDDDTLMIGMDFNVGQMAGAVYVQRIA 299
Query: 340 PVIEHLFDWSKT----DLRTTNNKISGLVEKYRP---DAIIIDANN 378
+E + + D + I + I D++
Sbjct: 300 DGVEEMHLVDEFCGLLDTDAMIDAIKERYPDHHARGLIEIFPDSSG 345
>gi|293411885|ref|ZP_06654610.1| predicted protein [Escherichia coli B354]
gi|220980013|emb|CAP72205.1| Hypothetical protein [Escherichia coli LF82]
gi|291469440|gb|EFF11929.1| predicted protein [Escherichia coli B354]
gi|323934319|gb|EGB30739.1| PBSX family protein phage terminase [Escherichia coli E1520]
Length = 418
Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/335 (14%), Positives = 105/335 (31%), Gaps = 46/335 (13%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ +V H +P FK + AGR GK+ L+ ++ + V +A +
Sbjct: 7 LSLVQLHSGQMKVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ LW ++ + L P W ++ I K+ S +
Sbjct: 66 MARQILWDDLQEVL-----------------PRKWVRKKNDTTMTIVLKNGSEIALK-GA 107
Query: 179 ERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
++PDT G ++ DE D + L+ ++ P+ +F
Sbjct: 108 DKPDTLRGV---ALHFVVLDEFQDMKADTWYKVLRPTLSS--TRGGALIIGTPKG-FSEF 161
Query: 238 YEIFN-------KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
++++ + WK +Q T + + E +D E F
Sbjct: 162 HKLWTIGQNVELQRKGQWKSWQFVTADSPFVPTAEIEAAKND--MDPKSFAQEYLASFEN 219
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK 350
+ P + + +P P+ +G D D V+ + L+ +
Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPRLPIWVGQD---FNIDPMSSVILQPQPNGELWAIDE 274
Query: 351 -----TDLRTTNNKISGLVEKYRP-DAIIIDANNT 379
++ +++ +++ + D
Sbjct: 275 LVLFSSNTAEVCDELERRFWRWKSQITVFPDPAGA 309
>gi|322614428|gb|EFY11359.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322621507|gb|EFY18360.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322624368|gb|EFY21201.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322626565|gb|EFY23370.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322633573|gb|EFY30315.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322638384|gb|EFY35082.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322647317|gb|EFY43813.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322649287|gb|EFY45724.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322655993|gb|EFY52293.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322661388|gb|EFY57613.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322666960|gb|EFY63135.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322671329|gb|EFY67452.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322677664|gb|EFY73727.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681510|gb|EFY77540.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322683910|gb|EFY79920.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323195479|gb|EFZ80657.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323200466|gb|EFZ85546.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323203030|gb|EFZ88062.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323205271|gb|EFZ90246.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323210579|gb|EFZ95463.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323218140|gb|EGA02852.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323221594|gb|EGA06007.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323227645|gb|EGA11800.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323230903|gb|EGA15021.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323234745|gb|EGA18831.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323238784|gb|EGA22834.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323241484|gb|EGA25515.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323248370|gb|EGA32306.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323252865|gb|EGA36699.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257014|gb|EGA40723.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323260513|gb|EGA44124.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323264430|gb|EGA47936.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323269565|gb|EGA53018.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
Length = 588
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFID-DLASVFPLSELQACMVDSWEVWTDFQSLALRPFG 404
Query: 315 YAPLIMGCDIAEE---GGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ G VV+ G L W D R + I L +
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|262194129|ref|YP_003265338.1| hypothetical protein Hoch_0830 [Haliangium ochraceum DSM 14365]
gi|262077476|gb|ACY13445.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365]
Length = 503
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 52/288 (18%)
Query: 227 TSNPRRLSGKFYEI----------FNKPLDDWKRFQIDTRTVEGIDPSF----HEGIIAR 272
S P G F+EI + W R + ++ E +A
Sbjct: 208 CSTPLGRRGIFWEISTEELRKYPHHTRDEVPWWRCRFFCLDIDRAMREAPHMPTEERVAA 267
Query: 273 YGLDSDV----------TRVEVCGQFPQQDIDSFIPLNIIEEALNRE--------PCPDP 314
+G + V + E F + S+ P +I + + P+P
Sbjct: 268 FGTQAIVQQLDSLPLEDFQQEFECSFVDESY-SYYPYELILPCTSEDLVPAGDFTDLPEP 326
Query: 315 YAPLIMGCDIAEEGGD-NTVVVLRRGPV--IEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
++ G D+ V G L + + + +++
Sbjct: 327 EGRIVAGFDVGRTRDRSELAVFEDTGGHFVCRLLRRYDQVPFAEQEADLRRFLDRVPVAR 386
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL---EFAS 428
+ ID + G + L V + N E L + +
Sbjct: 387 LSIDQSGIGMHLAENLARDYAQVVG----------DTFTNDNKERWATDLKILFQRKDIA 436
Query: 429 LINHSGLIQNLKSLKSFIVPNTGELAIESKRV-KGAKSTDYSDGLMYT 475
L L+ + S+K ++P+ G++ +++R +G + D +
Sbjct: 437 LPRDRELVGQIHSIKRRVLPS-GKVGFDAERSTRGGHA-DRFWAIALA 482
>gi|213865314|ref|ZP_03387433.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 171
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 11 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 67
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 68 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 127
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 128 QYNVTYIGIDSTGVGHGVYENVK 150
>gi|253991767|ref|YP_003043123.1| putative phage terminase subunit [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211638542|emb|CAR67163.1| probable phage terminase subunit [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253783217|emb|CAQ86382.1| probable phage terminase subunit [Photorhabdus asymbiotica]
Length = 585
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 23/144 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE-----------PCPDP 314
+ + Y D + + +F DI+S L +++ + P
Sbjct: 345 IDQLRLEY--SPDEYQNLLMCEF-MDDIESIFSLQLMQGCMVDSWEIWNDVQPLMLRPYG 401
Query: 315 YAPLIMGCDIAEEG--GDN--TVVV---LRRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
Y P+ +G D A+ G GD+ VVV L G L W + R ++ I L E
Sbjct: 402 YNPVWIGYDPAKGGKNGDSAGCVVVAPPLVPGGKFRILERHQWRGMNFRAQSDAIKRLTE 461
Query: 366 KYRPDAIIIDANNTGARTCDYLEM 389
+Y + I ID+ G ++
Sbjct: 462 QYNVEYIGIDSTGVGHGVYQNVKE 485
>gi|322831306|ref|YP_004211333.1| terminase, ATPase subunit [Rahnella sp. Y9602]
gi|321166507|gb|ADW72206.1| terminase, ATPase subunit [Rahnella sp. Y9602]
Length = 596
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 50/338 (14%), Positives = 98/338 (28%), Gaps = 66/338 (19%)
Query: 195 IINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPL-- 245
+ DE P+ + G ++ + S P L+ Y E+FNK
Sbjct: 257 LYVDEIFWIPNFQKLRKVASGMASQEHLRTT--YFSTPSALTHGAYPFWSGELFNKGREN 314
Query: 246 ----------------------DDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
W++ I+ G + + + + R
Sbjct: 315 PNDRIELDIGHHALAKGRLCEDGQWRQIVTIEDALAGGCNLFNIDTLKQENSAED--FRN 372
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDIAEEGGDN 331
+F S P ++ + Y + +G D + G
Sbjct: 373 LFMCEFVDDQ-TSVFPFAELQRCMVESAEEWQDFSPFAMRPFGYRAVWIGYDPSHTGDSA 431
Query: 332 --TVVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
VV L G L W D I L ++Y + I +DA G
Sbjct: 432 GCAVVAPPLVDGGKFRVLERHQWKGMDFAAQAKSIEELTKRYCVEYIGVDATGIGQGVFQ 491
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI---NHSGLIQNLKSL 442
+ A+++ + +T++ +K D + L NH + + ++
Sbjct: 492 LVRQ---------FFPAAMEIRYSPETKTKMVLKAKDTITSGRLEYDTNHKDITSSFMAI 542
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + E+ R + A D + +M+ P
Sbjct: 543 RKTMTASGSRSTYEASRSEEASHADVAWAIMHALLNEP 580
>gi|312601717|gb|ADQ92391.1| terminase ATPase subunit [Salmonella phage RE-2010]
gi|321223512|gb|EFX48577.1| Phage terminase, ATPase subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
Length = 572
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 332 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFQALALRPFG 388
Query: 315 YAPLIMGCDIAEE---GGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ G VV+ G L W D R + I L +
Sbjct: 389 WREVWIGYDPAKGTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 448
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 449 QYNVTYIGIDSTGVGHGVYENVK 471
>gi|298346517|ref|YP_003719204.1| phage terminase protein [Mobiluncus curtisii ATCC 43063]
gi|298236578|gb|ADI67710.1| phage terminase protein [Mobiluncus curtisii ATCC 43063]
Length = 470
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 63/406 (15%), Positives = 117/406 (28%), Gaps = 63/406 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ +V + + R GKTTL L+ + PG V
Sbjct: 32 PWQKLVADVAGERQAEHPERARYQTVVVTVP--RQSGKTTLIKALMAAVAQANPGCQVYY 89
Query: 113 LANSETQLKTTL--WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A + K + W E++K L + + P + G + +
Sbjct: 90 TAQTR---KDAVEKWGELAKQLRKD----------MGIAPDGKPRVKVLEGTGNERIVFR 136
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP----DVINLGILGF------------ 214
P T G H ++ DEA D +
Sbjct: 137 GTESMIMPFAP-TVEGIHGKTSPLVVVDEAWAFDQARGDDLMAAFNPVGLTIPHSQVWII 195
Query: 215 LTERNANRFWI---------MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS- 264
T + W+ ++P + F ++ + + + P+
Sbjct: 196 STAGDTRSEWLRSLVDKGRQAINDPGTTTAFFEWSADEEMAAAN---LRSDEALAFHPAI 252
Query: 265 ------FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ +A+ D + R +P S + L E+ EP P +
Sbjct: 253 GFTQELWKIQSLAQTEPDH-LYRRSYLNLWPTAAETSIVDLEAWEKLAEPEPASMPPD-V 310
Query: 319 IMGCDIAEEGGDNTVVVL-RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+G D+A T+ + G ++ SK I+ L E P A++ D +
Sbjct: 311 AIGFDVATARTGATIYAAWQDGETVQIHRLVSKAGAAWVEKAIAHLQETLAPMAVVADDS 370
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
+ L G +Y A+ + +E +++D
Sbjct: 371 GDNRPIIEALRRNGKEIY-------ALRPREYASANSEFFARISDN 409
>gi|300088757|ref|YP_003759279.1| hypothetical protein Dehly_1680 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528490|gb|ADJ26958.1| conserved hypothetical protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 507
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 62/394 (15%), Positives = 109/394 (27%), Gaps = 69/394 (17%)
Query: 38 WGEKGTPLEGFSAPRSW--QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA 95
WG+ S W Q+E + + ++ GR +GK+ + +
Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65
Query: 96 WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
L T G + A + L T + E+ L P+ M S++L
Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHLDTII-EEIEFQLDSNPD----LMNSIALTKYGKPK 120
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
++ + S + + D F H + DE + + + L
Sbjct: 121 IHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLTERAWKALRQCL 177
Query: 216 TERNANRFWIMTSNPRRL-SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY- 273
R + S P L +Y + + + F+ + ++ Y
Sbjct: 178 KAGGTLRIY---STPNGLRDTTYYRL--TSSEQFHVFRWPSWLNPLWTEDREAELLEFYG 232
Query: 274 GLDSDVTRVEVCGQFPQQDIDSF-----------------IPLNII--------EEALNR 308
G DS + EV G+ + +F I + E A +R
Sbjct: 233 GRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRDCDTEEAAHDR 292
Query: 309 -----EPCPDPYAPLIMGCDIAEEGGDNTVVVL-------RRGPVIEHLFDWSKTDLRTT 356
P + G D+ +VV R +
Sbjct: 293 LEMLLNLTPRSGQFWVGG-DLGYTNDPTEIVVFQEMEIGERTLLKMILRVHLEHVSYPHI 351
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
I+ L Y P I +D G L L
Sbjct: 352 AQIIALLERYYTPAGIGVDNGGNGLAVVQELLTL 385
>gi|262194298|ref|YP_003265507.1| hypothetical protein Hoch_1017 [Haliangium ochraceum DSM 14365]
gi|262077645|gb|ACY13614.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365]
Length = 478
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 52/288 (18%)
Query: 227 TSNPRRLSGKFYEI----------FNKPLDDWKRFQIDTRTVEGIDPSF----HEGIIAR 272
S P G F+EI + W R + ++ E +A
Sbjct: 183 CSTPLGRRGIFWEISTEELRKYPHHTRDEVPWWRCRFFCLDIDRAVREAPHMPTEERVAA 242
Query: 273 YGLDSDV----------TRVEVCGQFPQQDIDSFIPLNIIEEALNRE--------PCPDP 314
+G + V + E F + S+ P +I + + P+P
Sbjct: 243 FGTQAIVQQLDSLALEDFQQEFECSFVDESY-SYYPYELILPCTSEDLVLAGDFTDLPEP 301
Query: 315 YAPLIMGCDIAEEGG-DNTVVVLRRGPV--IEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
++ G D+ V G L + + + +++
Sbjct: 302 EGRIVAGFDVGRTRDHSELAVFEDTGGHFVCRLLRRYDQVPFAEQEADLRRFLDRVPVAR 361
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL---EFAS 428
+ ID + G + L V + N E L + +
Sbjct: 362 LSIDQSGIGMHLAENLARDYAQVVG----------DTFTNDNKERWATDLKILFQRKDIA 411
Query: 429 LINHSGLIQNLKSLKSFIVPNTGELAIESKRV-KGAKSTDYSDGLMYT 475
L L+ + S+K ++P+ G++ +++R +G + D +
Sbjct: 412 LPRDRELVGQIHSIKRRVLPS-GKVGFDAERSTRGGHA-DRFWAIALA 457
>gi|255103207|ref|ZP_05332184.1| hypothetical protein CdifQCD-6_20513 [Clostridium difficile
QCD-63q42]
Length = 582
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 69/505 (13%), Positives = 144/505 (28%), Gaps = 118/505 (23%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
+ P + +++ + + + A RG+GK+ L + +P
Sbjct: 31 YLANPHRFCMDYFGFNLHLFQQILIYMMMKSDQFVFIASRGLGKSWLLGVFCCVIAVLKP 90
Query: 107 GISVICLANSETQLKTTLWAEVS-----KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
G V+ A + Q K + +++ K +L F++ + + W +
Sbjct: 91 GTCVLIAAKRKKQAKLLITSKILGDLYLKSDTLKREIKSFQVNAQEVSIDFWNGSRIEAV 150
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-VINLGILGFLTERNA 220
+ D R Y +I DE + +N ++ FLT
Sbjct: 151 VSNDD------ARGYRAN--------------VLIVDEYRMVDEGTVNDVLVPFLTNPRQ 190
Query: 221 NRFWIMTSNPRR-----------LSGKFYEIFNKPLDDWKRFQI---------------D 254
NP+ LS +Y + +
Sbjct: 191 PG---YLQNPKYRYMQEENKEIYLSSGWYSQHWSYKKFMETVKGMLSGEDMFACSIPFTC 247
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI----------------P 298
+ + + + + +E CG F + D+F P
Sbjct: 248 SLEHGLLTKKRILKEMKKESMSDASFMMEYCGVFYNESDDAFFKSSWVNPCRVLESMFYP 307
Query: 299 LNIIEEALNREPCPDPY-------APLIMGCDI--AEEGGDNTVVV------LRRGPV-- 341
+ IE N++ Y I+G DI A ++ + G
Sbjct: 308 PSDIEYLENKKKRDKKYHLNKIKGEIRIIGADIALARGVKNDNSIYTLMRMLPNEGTYKR 367
Query: 342 -IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART--------CDYLEMLGY 392
+ H+ ++ + ++ L ++ D +I+D G D Y
Sbjct: 368 CVVHIEAYNGMEAEKQAIRLKQLFSDFQADYMILDTQGIGTTVWSYIQKANYDSDRDEWY 427
Query: 393 HVYRVLGQKRAVDL-------------EFCRNRRTELHVKMADWLEFASL------INHS 433
Y + VD + + ++ + + D L +L I
Sbjct: 428 DAYTCFNEDNTVDKSLAKKSLPVVYSMKAYADENHKMAMSLRDVLTNRTLELPISDIEAK 487
Query: 434 GLIQNLKSLKSFIVPNTGELAIESK 458
+I + +K+ + E +E+K
Sbjct: 488 EMILEKEMIKADEIDKKAE--LEAK 510
>gi|197249763|ref|YP_002147654.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197213466|gb|ACH50863.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
Length = 588
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFQALALRPFG 404
Query: 315 YAPLIMGCDIAEE---GGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ G VV+ G L W D R + I L +
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|152982949|ref|YP_001353896.1| hypothetical protein mma_2206 [Janthinobacterium sp. Marseille]
gi|151283026|gb|ABR91436.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 436
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/276 (15%), Positives = 84/276 (30%), Gaps = 35/276 (12%)
Query: 82 ISAGRGIGKT-TLNAWLVLWLMSTRP-GISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A R GKT L+ ++ +A Q K+ W V ++ +++P
Sbjct: 29 VVAHRRAGKTVACVNELIKAALTFHGNDGRFAYVAPFYRQAKSVAWDYVKRFSAVIPGIS 88
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E + +P + + + D G ++ DE
Sbjct: 89 INESELRIDYPNGSR------------------IQLFGADNADALRGLFFDG---VVADE 127
Query: 200 ASGTPDVINL-GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP--LDDWKRFQIDTR 256
+ I L +R + ++ P+ + + EI+ +DW I
Sbjct: 128 YGDWKPSVWGYVIRPALADRGG--WAVIIGTPKGRNQFW-EIYQHAGVNEDWLCLTIRAS 184
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ P E + + L D R E+ F + I + + D Y
Sbjct: 185 ESGLLPPKEIEAL--QLELTEDAWRQEMECDFDAALPGAIFGKEIWQAEQDGRVKDDLYD 242
Query: 317 P---LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS 349
P + D+ D + + G + + +S
Sbjct: 243 PELKVHAVLDLG-FTDDTAIWWFQVGKELRIIDCYS 277
>gi|331656886|ref|ZP_08357848.1| terminase, ATPase subunit [Escherichia coli TA206]
gi|331055134|gb|EGI27143.1| terminase, ATPase subunit [Escherichia coli TA206]
Length = 531
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 291 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 347
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 348 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 407
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 408 QYNVTYIGIDSTGVGHGVYENVK 430
>gi|78355964|ref|YP_387413.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78218369|gb|ABB37718.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 507
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 62/394 (15%), Positives = 109/394 (27%), Gaps = 69/394 (17%)
Query: 38 WGEKGTPLEGFSAPRSW--QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA 95
WG+ S W Q+E + + ++ GR +GK+ + +
Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCPAKNIIHLD--------------GRDVGKSIVLS 65
Query: 96 WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
L T G + A + L T + E+ L P+ M S++L
Sbjct: 66 TDALHYAFTTRGGQGLVAAPHQGHLDTII-EEIEFQLDTNPD----LMNSIALTKYGKPK 120
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
++ + S + + D F H + DE + + + L
Sbjct: 121 IHRKPYFRLEFTNGSVLYFRPAGAYGDAFRSLHVGR---VWVDEGAWLTERAWKALRQCL 177
Query: 216 TERNANRFWIMTSNPRRL-SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY- 273
R + S P L +Y + + + F+ + ++ Y
Sbjct: 178 KAGGTLRIY---STPNGLRDTTYYRL--TSSEQFHVFRWPSWLNPLWTEDREAELLEFYG 232
Query: 274 GLDSDVTRVEVCGQFPQQDIDSF-----------------IPLNII--------EEALNR 308
G DS + EV G+ + +F I + E A +R
Sbjct: 233 GRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRDCDTEEAAHDR 292
Query: 309 -----EPCPDPYAPLIMGCDIAEEGGDNTVVVL-------RRGPVIEHLFDWSKTDLRTT 356
P + G D+ +VV R +
Sbjct: 293 LEMLLNLTPRSGQFWVGG-DLGYTNDPTEIVVFQEMEVGERTLLKMILRVHLEHVSYPHI 351
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
I+ L Y P I +D G L L
Sbjct: 352 AQIIALLERYYTPAGIGVDNGGNGLAVVQELLTL 385
>gi|34335039|gb|AAQ65014.1| unknown [synthetic construct]
gi|301159280|emb|CBW18795.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|323131065|gb|ADX18495.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
Length = 588
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFQALALRPFG 404
Query: 315 YAPLIMGCDIAEE---GGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ G VV+ G L W D R + I L +
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|200387487|ref|ZP_03214099.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199604585|gb|EDZ03130.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 588
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFQALALRPFG 404
Query: 315 YAPLIMGCDIAEE---GGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ G VV+ G L W D R + I L +
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|221196218|ref|ZP_03569265.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
gi|221202891|ref|ZP_03575910.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
gi|221176825|gb|EEE09253.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
gi|221182772|gb|EEE15172.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
Length = 424
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 67/240 (27%), Gaps = 35/240 (14%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTL-NAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ E + I GR GKTTL W G+ V +
Sbjct: 14 QAEIGRAFNESRRVVIRCGRRFGKTTLLERCASKWA---YNGLKVGWFGPTYK------- 63
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
L+L K ++ V+ + G + ++ D
Sbjct: 64 ------LNLPTYKRILRTVQPVVYSKSKIDQVIELNSGGCIEFWTL---------QDEDA 108
Query: 186 GHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFWIMTSNPRR--LSGKFYEI 240
G Y +I DE S P I + T + IM P+ FYE
Sbjct: 109 GRSRFYD-RVIIDEGSLVPKGLRSIWEQAI-APTLLDRKGHAIMAGTPKGIDPENFFYEA 166
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
W+ F T + +DP + Y + V + E F + +F
Sbjct: 167 CTDKTLGWREFHAPTASNPMLDPEAVARLKDEY--PALVYQQEYLADFVDWNGAAFFSEE 224
>gi|16763092|ref|NP_458709.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|25315565|pir||AH1037 probable terminase chain [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16505400|emb|CAD06749.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 588
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFID-DLASVFPLSELQACMVDSWEVWTDFQALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDNT---VVVL--RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ V+ G L W D R + I L +
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVIAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|309797383|ref|ZP_07691776.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
145-7]
gi|308119007|gb|EFO56269.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
145-7]
Length = 418
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/335 (14%), Positives = 105/335 (31%), Gaps = 46/335 (13%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ +V H +P FK + AGR GK+ L+ ++ + V +A +
Sbjct: 7 LSLVQLHSGQMKVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ LW ++ + L P W ++ I K+ S +
Sbjct: 66 MARQILWDDLQEVL-----------------PRKWVRKKNDTTMTIVLKNGSEIALK-GA 107
Query: 179 ERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
++PDT G ++ DE D + L+ ++ P+ +F
Sbjct: 108 DKPDTLRGV---ALHFVVLDEFQDMKADTWYKVLRPTLSS--TRGGALIIGTPKG-FSEF 161
Query: 238 YEIFN-------KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
++++ + WK +Q T + + E +D E F
Sbjct: 162 HKLWTIGQNVELQRKGQWKSWQFVTADSPFVPTAEIEAAKND--MDPKSFAQEYLASFEN 219
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK 350
+ P + + +P P+ +G D D V+ + L+ +
Sbjct: 220 MSGRVYYPFD--RNVHVKPLQFNPRLPIWVGQD---FNIDPMSSVILQPQPNGELWAIDE 274
Query: 351 -----TDLRTTNNKISGLVEKYRPD-AIIIDANNT 379
++ +++ +++ + D
Sbjct: 275 LVLFSSNTAEVCDELERRFWRWKSQVTVFPDPAGA 309
>gi|163801735|ref|ZP_02195633.1| hypothetical protein 1103602000597_AND4_09782 [Vibrio sp. AND4]
gi|159174652|gb|EDP59454.1| hypothetical protein AND4_09782 [Vibrio sp. AND4]
Length = 546
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/260 (13%), Positives = 71/260 (27%), Gaps = 55/260 (21%)
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDD 247
+ DE P D +N T +N + S P + + Y + + + D
Sbjct: 211 VYVDEYFWIPKFDELNKLASAMATHKNWRKT--YFSTPSAKTHQAYTFWTGDQWRRGRDT 268
Query: 248 WKRFQIDT----RTVEGIDPSF--------------------HEGIIARYGLDSDVTRVE 283
+ T R + P + + Y D
Sbjct: 269 RANIEFPTFDEYRDGGRLCPDKQWRYVVTIEDAAAGGCELFDIDELRDEYSKDD--FDNL 326
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNT- 332
F S + +E+A+ + P + +G D + +
Sbjct: 327 FMCIFVDGAS-SVFKFSALEKAMVDISRWQDFKPNDNDPFERREVWLGYDPSRTRDNACL 385
Query: 333 ------VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ + + + W + + ++S + E+Y + ID GA D
Sbjct: 386 VVVAPPVIAIEK-FRVLEKHYWRGLNFQYQAQQVSKVFERYNVSYLGIDTTGIGAGVYDL 444
Query: 387 L-EMLGYHVYRVLGQKRAVD 405
L + + + +
Sbjct: 445 LSKKHPRETVAIQYSNESKN 464
>gi|253689540|ref|YP_003018730.1| hypothetical protein PC1_3171 [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756118|gb|ACT14194.1| protein of unknown function DUF264 [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 589
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/205 (16%), Positives = 62/205 (30%), Gaps = 30/205 (14%)
Query: 246 DDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
W++ ++ G + + ++ Y + + +F S P ++
Sbjct: 329 GQWRQIVTVEDALSGGCNLFDLDQLMLEY--SPAEYQNLLMCEFVDDKA-SVFPFEELQR 385
Query: 305 ALNREPCPDP-----------YAPLIMGCDIAEEGGDNTVVVLRR----GPVIEHL--FD 347
+ Y P+ +G D + G VVL G L F
Sbjct: 386 CMVDALEEWEDFNPYALRPFAYKPVWIGYDPSHTGDSAGCVVLAPPQAPGGKFRILERFQ 445
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLE 407
W D + I L EKY + I IDA G + A +++
Sbjct: 446 WKGMDFAAQADAIKLLTEKYIVEYIGIDATGIGQGVYQLVRG---------FFPAAREIK 496
Query: 408 FCRNRRTELHVKMADWLEFASLINH 432
+ +T + +K D + L
Sbjct: 497 YSPEIKTAMVLKAKDTITSGRLEYD 521
>gi|213650797|ref|ZP_03380850.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
Length = 518
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 278 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 334
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 335 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 394
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 395 QYNVTYIGIDSTGVGHGVYENVK 417
>gi|309795387|ref|ZP_07689805.1| conserved hypothetical protein [Escherichia coli MS 145-7]
gi|308121037|gb|EFO58299.1| conserved hypothetical protein [Escherichia coli MS 145-7]
Length = 588
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|16766035|ref|NP_461650.1| terminase-like protein [Enterobacteria phage Fels-2]
gi|169936048|ref|YP_001718747.1| P2 gpP-like protein [Enterobacteria phage Fels-2]
gi|16421269|gb|AAL21609.1| Fels-2 prophage protein [Enterobacteria phage Fels-2]
gi|312913743|dbj|BAJ37717.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
Length = 588
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFID-DLASVFPLSELQACMVDSWEVWTDFQALALRPFG 404
Query: 315 YAPLIMGCDIAEE---GGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ G VV+ G L W D R + I L +
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|323938219|gb|EGB34479.1| terminase [Escherichia coli E1520]
Length = 588
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|291335343|gb|ADD94958.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C148]
Length = 234
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 23/187 (12%)
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE----RPDTFVGHHNTYGMAIINDEASG 202
L P PW L ++ + ST+ +E R + G ++ DEA+
Sbjct: 12 KLVPKPWIKTKNETDLKLELVNGSTIELKGTENAMALRGRSLSG--------VVLDEAAF 63
Query: 203 T-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF----NKPLDDWKRFQIDTRT 257
+V I L ++ + + S P + FY+++ + P ++WKR+ T
Sbjct: 64 MDAEVWFEVIRPALADKQG--WALFISTPDGTASWFYDLWCYCEDDPTNEWKRWCYTTIE 121
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
+ E A+ LD R E F +++ + ++ ++ ++ + P
Sbjct: 122 GGNVPQEEVEAARAQ--LDPRTFRQEFEASF--ENLTGLVAISFSDDNISTDAKDISIQP 177
Query: 318 LIMGCDI 324
L++G D
Sbjct: 178 LLLGVDF 184
>gi|198245759|ref|YP_002216726.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|197940275|gb|ACH77608.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|326624483|gb|EGE30828.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 588
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|170020778|ref|YP_001725732.1| hypothetical protein EcolC_2777 [Escherichia coli ATCC 8739]
gi|169755706|gb|ACA78405.1| protein of unknown function DUF264 [Escherichia coli ATCC 8739]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|306812733|ref|ZP_07446926.1| Terminase, ATPase subunit (GpP) [Escherichia coli NC101]
gi|305853496|gb|EFM53935.1| Terminase, ATPase subunit (GpP) [Escherichia coli NC101]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|300907199|ref|ZP_07124862.1| hypothetical protein HMPREF9536_05153 [Escherichia coli MS 84-1]
gi|301303626|ref|ZP_07209748.1| hypothetical protein HMPREF9347_02221 [Escherichia coli MS 124-1]
gi|300401074|gb|EFJ84612.1| hypothetical protein HMPREF9536_05153 [Escherichia coli MS 84-1]
gi|300841125|gb|EFK68885.1| hypothetical protein HMPREF9347_02221 [Escherichia coli MS 124-1]
gi|315257856|gb|EFU37824.1| conserved hypothetical protein [Escherichia coli MS 85-1]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWSDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|253774139|ref|YP_003036970.1| hypothetical protein ECBD_2764 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160943|ref|YP_003044051.1| Terminase, ATPase subunit [Escherichia coli B str. REL606]
gi|242376647|emb|CAQ31358.1| ybl37 [Escherichia coli BL21(DE3)]
gi|253325183|gb|ACT29785.1| protein of unknown function DUF264 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972844|gb|ACT38515.1| Terminase, ATPase subunit [Escherichia coli B str. REL606]
gi|253977058|gb|ACT42728.1| Terminase, ATPase subunit [Escherichia coli BL21(DE3)]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEIWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|16762249|ref|NP_457866.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143738|ref|NP_807080.1| terminase ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|215485952|ref|YP_002328383.1| predicted terminase, ATPase subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|312969111|ref|ZP_07783318.1| terminase, ATPase subunit [Escherichia coli 2362-75]
gi|25315563|pir||AB0927 terminase, ATPase chain [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16504553|emb|CAD09436.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139373|gb|AAO70940.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|215264024|emb|CAS08365.1| predicted terminase, ATPase subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|312286513|gb|EFR14426.1| terminase, ATPase subunit [Escherichia coli 2362-75]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|324112701|gb|EGC06677.1| terminase [Escherichia fergusonii B253]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|323953478|gb|EGB49344.1| terminase [Escherichia coli H252]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|157160343|ref|YP_001457661.1| terminase, ATPase subunit [Escherichia coli HS]
gi|218559567|ref|YP_002392480.1| Terminase, ATPase subunit (GpP) [Escherichia coli S88]
gi|256021061|ref|ZP_05434926.1| Terminase, ATPase subunit (GpP) [Shigella sp. D9]
gi|300817075|ref|ZP_07097294.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|331662228|ref|ZP_08363151.1| terminase, ATPase subunit [Escherichia coli TA143]
gi|331676606|ref|ZP_08377302.1| terminase, ATPase subunit [Escherichia coli H591]
gi|332282288|ref|ZP_08394701.1| DNA-dependent ATPase terminase subunit [Shigella sp. D9]
gi|157066023|gb|ABV05278.1| terminase, ATPase subunit [Escherichia coli HS]
gi|218366336|emb|CAR04087.1| Terminase, ATPase subunit (GpP) [Escherichia coli S88]
gi|300530427|gb|EFK51489.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|315615257|gb|EFU95893.1| terminase, ATPase subunit [Escherichia coli 3431]
gi|323172219|gb|EFZ57857.1| terminase, ATPase subunit [Escherichia coli LT-68]
gi|323190830|gb|EFZ76098.1| terminase, ATPase subunit [Escherichia coli RN587/1]
gi|323942735|gb|EGB38900.1| terminase [Escherichia coli E482]
gi|323946304|gb|EGB42336.1| terminase [Escherichia coli H120]
gi|323963883|gb|EGB59377.1| terminase [Escherichia coli M863]
gi|327252355|gb|EGE64027.1| terminase, ATPase subunit [Escherichia coli STEC_7v]
gi|331060650|gb|EGI32614.1| terminase, ATPase subunit [Escherichia coli TA143]
gi|331075295|gb|EGI46593.1| terminase, ATPase subunit [Escherichia coli H591]
gi|332104640|gb|EGJ07986.1| DNA-dependent ATPase terminase subunit [Shigella sp. D9]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|312970940|ref|ZP_07785119.1| terminase, ATPase subunit [Escherichia coli 1827-70]
gi|310336701|gb|EFQ01868.1| terminase, ATPase subunit [Escherichia coli 1827-70]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|307314499|ref|ZP_07594102.1| protein of unknown function DUF264 [Escherichia coli W]
gi|306905922|gb|EFN36444.1| protein of unknown function DUF264 [Escherichia coli W]
gi|315060102|gb|ADT74429.1| terminase, ATPase subunit [Escherichia coli W]
gi|323379340|gb|ADX51608.1| terminase ATPase subunit [Escherichia coli KO11]
gi|332342200|gb|AEE55534.1| phage terminase, ATPase subunit [Escherichia coli UMNK88]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|26246838|ref|NP_752878.1| terminase, ATPase subunit [Escherichia coli CFT073]
gi|26107238|gb|AAN79421.1|AE016758_25 Terminase, ATPase subunit [Escherichia coli CFT073]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|300916285|ref|ZP_07133032.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300416374|gb|EFJ99684.1| conserved hypothetical protein [Escherichia coli MS 115-1]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|271499312|ref|YP_003332337.1| hypothetical protein Dd586_0742 [Dickeya dadantii Ech586]
gi|270342867|gb|ACZ75632.1| protein of unknown function DUF264 [Dickeya dadantii Ech586]
Length = 591
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 20/162 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY +D+ + F + D+ + +
Sbjct: 329 PDGQWRYVITMEDAIRGGFNLASLEKLRNRYNVDT--FNMLYMCVFVD-NKDAVFSFDDL 385
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV------VVLRRGPVIEHLF 346
E + P + G D A G +T + + +
Sbjct: 386 ERCGVDPATWQDHDPTAPRPFGNREVWGGYDPARSGDLSTFVIVAPPIYEGEKFRVLLVV 445
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+W + R N+I L ++Y I ID GA + ++
Sbjct: 446 NWHGMNFRYQANQIKKLFQRYHFTYIGIDVTGIGAGVFENIQ 487
>gi|222034345|emb|CAP77086.1| Terminase, ATPase subunit [Escherichia coli LF82]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|218690765|ref|YP_002398977.1| terminase, ATPase subunit (GpP) [Escherichia coli ED1a]
gi|218428329|emb|CAR09255.2| Terminase, ATPase subunit (GpP) [Escherichia coli ED1a]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|300896792|ref|ZP_07115295.1| terminase, ATPase subunit family protein [Escherichia coli MS
198-1]
gi|300359367|gb|EFJ75237.1| terminase, ATPase subunit family protein [Escherichia coli MS
198-1]
Length = 391
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/184 (17%), Positives = 51/184 (27%), Gaps = 29/184 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 218 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAAHPFG 274
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 275 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 334
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 335 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPELKTAMVLKAKDVIRRGC 385
Query: 429 LINH 432
L
Sbjct: 386 LEYD 389
>gi|320199051|gb|EFW73648.1| Phage terminase, ATPase subunit [Escherichia coli EC4100B]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|304360765|ref|YP_003856886.1| gp8 [Mycobacterium phage Angelica]
gi|302858349|gb|ADL71097.1| gp8 [Mycobacterium phage Angelica]
Length = 473
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 69/389 (17%), Positives = 123/389 (31%), Gaps = 57/389 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + ++V A S ++F +I R GKT +V PG +VI
Sbjct: 43 DQWQDDLGKLVCAK--RSDGLYAADMFAMSIP--RQTGKTYFLGAIVFAFCKMNPGTTVI 98
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ +T AE K + L + L++H G ++ ++
Sbjct: 99 WTAH-----RTRTAAETFKSMQALAKREQIAPHILNVH----------TGNGKEAVLFTN 143
Query: 172 MCRTYSEERPDTF-VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
R R F G +I DEA + ++ T + N + P
Sbjct: 144 GSRILFGAREKGFGRGF--AKVDVLIFDEAQILSENAMDDMIPA-TNASPNGLILFAGTP 200
Query: 231 RRLS--GKFY-----EIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGI------------ 269
+ + G+ + + N DD + D + ++ +
Sbjct: 201 PKPTDPGEVFTNLRMDALNGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAI 260
Query: 270 -IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC----PDPYA-PLIMGCD 323
R L D R E G + + + + +I+ L R+ P+P A P +G D
Sbjct: 261 RRMRKALSWDSFRREAMGIWDKISVHA----QVIKAGLWRDLADPLGPEPGAKPASLGVD 316
Query: 324 IAEEGGDNTVVVLRRGPVIEHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
++ G + + H+ W+ TD I R ++ID +
Sbjct: 317 MSHGGAISIGGCWLIDDELRHVEQVWAGTDTAAAVEFIVERAG--RRIPVVIDDASPAKA 374
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
L+ V A +N
Sbjct: 375 LVPELKRRKVKVRITYAGDMAKACGLFKN 403
>gi|82543312|ref|YP_407259.1| terminase, ATPase subunit [Shigella boydii Sb227]
gi|81244723|gb|ABB65431.1| terminase, ATPase subunit [Shigella boydii Sb227]
gi|320185726|gb|EFW60482.1| Phage terminase, ATPase subunit [Shigella flexneri CDC 796-83]
gi|332097052|gb|EGJ02035.1| terminase, ATPase subunit [Shigella boydii 3594-74]
Length = 588
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|307129625|ref|YP_003881641.1| hypothetical protein Dda3937_02574 [Dickeya dadantii 3937]
gi|306527154|gb|ADM97084.1| Possible phage protein [Dickeya dadantii 3937]
Length = 591
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 20/162 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY +D+ + F + D+ + +
Sbjct: 329 PDGQWRYVITMEDAIRGGFNLASLEKLRNRYNVDT--FNMLYMCVFVD-NKDAVFSFDDL 385
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVV----LRRGPVIEHLF-- 346
E + P + G D A G +T+V+ + G L
Sbjct: 386 ERCGVDPATWQDHDPTAPRPFGNREVWGGYDPARSGDLSTLVIVAPPIYDGEKFRVLLVV 445
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+W + R N+I L ++Y I ID GA + ++
Sbjct: 446 NWHGMNFRYQANQIKKLFQRYHFTYIGIDVTGIGAGVFENIQ 487
>gi|260599032|ref|YP_003211603.1| Terminase, ATPase subunit [Cronobacter turicensis z3032]
gi|260218209|emb|CBA33092.1| Terminase, ATPase subunit [Cronobacter turicensis z3032]
Length = 590
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 18/143 (12%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY-----------APLIM 320
+ ++ R +F S P ++ + P+ +
Sbjct: 355 KRENSAEDFRNLFMCEFVDDKA-SVFPFEELQRCMVDSLEEWEDFSPFAARPFGSRPVWI 413
Query: 321 GCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D + G VVL G L W D T I L EKY+ + I I
Sbjct: 414 GYDPSHTGDSAGCVVLAPPVVSGGKFRILERHQWKGMDFATQAQAIRELTEKYQVEYIGI 473
Query: 375 DANNTGARTCDYLEMLGYHVYRV 397
DA G + +
Sbjct: 474 DATGIGQGVFQLVRAFWPAAREI 496
>gi|291334416|gb|ADD94071.1| hypothetical protein GobsU_33659 [uncultured phage
MedDCM-OCT-S04-C1035]
gi|291334470|gb|ADD94124.1| hypothetical protein GobsU_33659 [uncultured phage
MedDCM-OCT-S04-C1161]
Length = 223
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 31/235 (13%)
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+A + Q K+ W + ++ + +PN + E + P +L
Sbjct: 6 NPRFAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPNGSRITLLG------- 58
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN-LGILGFLTERNANRFWI 225
E D G + + DE + + I L++R + +
Sbjct: 59 -----------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDR--KGYCV 102
Query: 226 MTSNPRRLSGKFYEIFNKPLD--DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P ++ FY+++ DW ++ + +DP E G E
Sbjct: 103 FIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGEKK--YLQE 160
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG--DNTVVVL 336
+ + I + + PY P + A + G D++ ++
Sbjct: 161 FECDWIANIEGAIYGEEIAKIEDKNQIARVPYDP-TLPVSTAWDLGVADHSSIIF 214
>gi|296103195|ref|YP_003613341.1| hypothetical protein ECL_02853 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295057654|gb|ADF62392.1| hypothetical protein ECL_02853 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 591
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 20/169 (11%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY ++ + F DS + +
Sbjct: 328 PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFDMLYMCVFVDSK-DSVFSFSDL 384
Query: 303 EEA---LNREPCPDPYA-------PLIMGCDIAEEGGDNTVVVL------RRGPVIEHLF 346
E ++ DP A P+ G D A G + V++ + +
Sbjct: 385 EACGVEMDTWQDHDPDAKRPFGDRPVWGGFDPARSGDLSCFVIVAPPMFAVEKFRVLKVI 444
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
W + R +I L ++Y + +D G D ++ V
Sbjct: 445 YWKGMNFRYQAKQIEKLFDQYNFTYLGVDVTGIGQGVFDNIQHFAMKVV 493
>gi|310815629|ref|YP_003963593.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
gi|308754364|gb|ADO42293.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
Length = 427
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 68/424 (16%), Positives = 113/424 (26%), Gaps = 75/424 (17%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGIS---------VICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ S G V +A + Q + +
Sbjct: 36 IMGGRGAGKTRAGA---EWVRSMVEGPRPDTPGRAKRVGLIAQTMDQAREVMV------- 85
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
F L P + R +S P+ G
Sbjct: 86 --------FGDSGLMACCPPARRPEWIAGRAMLRWPNGAEARLFSAHDPEALRGPQFD-- 135
Query: 193 MAIINDEASG--TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
AI DE + ++ L + R G F
Sbjct: 136 -AIWADEVAKWRLAQEAWDMLVMGLRLGDDPR---ACLTTTPRGGPFLRKLLAQSGTVMT 191
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ P F + A + S + R E+ G + + P ++++ AL R+
Sbjct: 192 HAPTRANRANLAPGFVAAVEAMF-EGSHLGRQELDGLLVDEAEGTLWPQHLLDAALQRQA 250
Query: 311 CPDPYAPLIMGCDI---AEEGGDNTVVVLRRGPVIEHLFDWS----------KTDLRTTN 357
P +++ D G D +++ DW T
Sbjct: 251 PP--LDRIVVAVDPPVTGHAGSDACGIIVAGVEQRGAPTDWRLWVIEDATVQGASPHTWA 308
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ ++ D ++ + N GA L L H+ RAV + R E
Sbjct: 309 SAAIAAFHRHGADRLVAEVNQGGALVESVLRQLDPHI-----PYRAVRASKSKGARAE-- 361
Query: 418 VKMADWLEFASLINHSGLI---QNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
++ E + GL + + G S D D L++
Sbjct: 362 -PVSTIYERGRACHLPGLALLEAQMSLMTLQGFTGKG-------------SPDRVDALVW 407
Query: 475 TFAE 478
E
Sbjct: 408 AAHE 411
>gi|258545857|ref|ZP_05706091.1| probable terminase (atpase subunit) related protein
[Cardiobacterium hominis ATCC 15826]
gi|258518873|gb|EEV87732.1| probable terminase (atpase subunit) related protein
[Cardiobacterium hominis ATCC 15826]
Length = 595
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 29/201 (14%)
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
I+ G D E + ++ + QF DS + ++ +
Sbjct: 339 ITIEDAINSGFDRVTLEKLRIKF--PPGQFENLLMCQFVNDG-DSIFKMAELQRCMVDAW 395
Query: 311 CPDPYA-----------PLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFD--WSKTDL 353
P+ +G D + D ++VV+ G V + ++ D
Sbjct: 396 TVWQDYTPLAARPLGDVPVWIGYDPSRSQDDASLVVIAPPQVEGGVFRIIDKQSFNGLDF 455
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
KI Y I IDA G D + V ++L A +
Sbjct: 456 DAQARKIRDFCRMYNVVHIAIDATGIGQAVYDLVRQFFPRVRKILYSVEAKN-------- 507
Query: 414 TELHVKMADWLEFASLINHSG 434
E+ +K + A L +G
Sbjct: 508 -EMVLKAKQLIAHARLQWDNG 527
>gi|291334530|gb|ADD94183.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C1201]
gi|291334650|gb|ADD94297.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C695]
Length = 223
Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/240 (13%), Positives = 72/240 (30%), Gaps = 31/240 (12%)
Query: 102 MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
M +A + Q K+ W + ++ +P+ + E + P +L
Sbjct: 1 MCPHKNPRFAYIAPTFKQAKSIAWDYMKQFTDKIPSTKFNETELRVDLPNGARITLLG-- 58
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN-LGILGFLTERNA 220
E D G + + DE + + I L++R
Sbjct: 59 ----------------AENSDGLRGIYLDGC---VIDEYANIDGKLFAEIIRPALSDR-- 97
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLD--DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
+ + P ++ FY+++ DW ++ + +D + G
Sbjct: 98 KGYCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASETKIVDQEELDKAKEVMGEKK- 156
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG--DNTVVVL 336
E + + I + ++ PY P + A + G D++ ++
Sbjct: 157 -YLQEFECDWIANIEGAIYGEEIAKLDDKKQLARVPYDP-TLPVSTAWDLGVADHSSIIF 214
>gi|51597451|ref|YP_071642.1| orf16-like phage protein [Yersinia pseudotuberculosis IP 32953]
gi|51590733|emb|CAH22378.1| Possible [Haemophilus phage HP1] orf16-like phage protein [Yersinia
pseudotuberculosis IP 32953]
Length = 601
Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 19/140 (13%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP-------- 317
E + +Y ++ + QF D+ + +E+ + P
Sbjct: 354 IERLRNKY--NATAFAMLYMCQFVDSK-DAVFKFSELEKCAVDAGMWQDHDPKAARPFGN 410
Query: 318 --LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ G D + G ++T V++ + ++ W + ++I L+ +Y
Sbjct: 411 REVWGGFDPSRSGDNSTFVIVAPPLYDGERFRVLAVYYWQGLNFNYQADQIKQLMRRYNM 470
Query: 370 DAIIIDANNTGARTCDYLEM 389
I ID G D +E
Sbjct: 471 TYIGIDITGIGRGVFDLVER 490
>gi|332560992|ref|ZP_08415310.1| hypothetical protein RSWS8N_18139 [Rhodobacter sphaeroides WS8N]
gi|332274790|gb|EGJ20106.1| hypothetical protein RSWS8N_18139 [Rhodobacter sphaeroides WS8N]
Length = 468
Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 70/237 (29%), Gaps = 18/237 (7%)
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRR 232
T PDT G +I DE + I + +++ S P
Sbjct: 133 TALPANPDTARGFSAN----VILDEFAFHAKSREIWAALFPVISKGGQKLRV--ISTPNG 186
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
KFYE+ W R +D ++ D D E ++ +
Sbjct: 187 KGNKFYELMTAEGSVWSRHVVDIHEAVRQGLDRDIDMLRAGMADEDAWAQEYELKWLDEA 246
Query: 293 IDSFIPLNIIEEA---LNREPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEHL 345
++++ ++I P P +G DIA D V+ + +
Sbjct: 247 -NAWLDYDLISACEHPAAGMPGLYMGGPCFVGVDIAARN-DLFVIWVLELVGDVLWTREV 304
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG-ARTCDYLEMLGYHVYRVLGQK 401
+ + + ++ + ++R ID G D G V +L
Sbjct: 305 IARRRVSFQEQDRLLAEVFRRFRVVRCRIDQTGMGEKPVEDAKRAHGDRVEGILFSA 361
>gi|188495109|ref|ZP_03002379.1| terminase [Escherichia coli 53638]
gi|188490308|gb|EDU65411.1| terminase [Escherichia coli 53638]
Length = 607
Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 20/173 (11%)
Query: 244 PLDDWK-RFQIDTRTVEGID-PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF--IPL 299
P W+ ++ +G+ E + RY + +F F L
Sbjct: 336 PDGIWRYVITMEDACAKGLSARVNIEKLRNRYSAT--AFAMLYMCEFTDSRDTVFKFSDL 393
Query: 300 NIIEEALNREPCPDPYA-------PLIMGCDIAEEGGDNTVVVL------RRGPVIEHLF 346
E DP A + G D + G ++T V++ + + ++
Sbjct: 394 EKCEVEFGIWQDFDPSALRPFGNREVWGGFDPSRTGDNSTFVIVAPPVEPKEKFRVLAVY 453
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVL 398
W + +I L+++YR I +D G D L V +
Sbjct: 454 QWVGLNFTWQVKQIEELMKRYRFTHIGVDITGIGRGVYDQLVRSAPREVMGIN 506
>gi|149911893|ref|ZP_01900493.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
PE36]
gi|149805043|gb|EDM65069.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
PE36]
Length = 601
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 56/350 (16%), Positives = 101/350 (28%), Gaps = 77/350 (22%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
IG T A+ + + A S Q AE+ K + + F ++
Sbjct: 181 IGATFYFAFEAFYDAVVNGRNKIFISA-SRDQ------AEIFKANIIALCREQFGIE--- 230
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-- 205
L +P + + K ST RT D + DE P
Sbjct: 231 LSGSPLTMRNKGKTTTLYFK--STNARTAQSASGD------------LYIDEVFWIPKFK 276
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF 265
+ T ++ S P S + Y+++N W R E
Sbjct: 277 ELRSLAQAMATHKDFRIT--YFSTPSVTSHEAYDLWN---GRWYRKTKACNDPEFAIDVS 331
Query: 266 HEGIIARYGLDSDVTRVEV------------------CGQFPQQDIDSFIPLNIIEEALN 307
H+ + D + R ++ ++ +++ D+ I++A +
Sbjct: 332 HKTLKHGLLCDDGIWRQKLNVYDVVEQGFDRIDISMLENEYSKEEFDNLFMCKFIDDAHS 391
Query: 308 ----------------------REPCPDPYAPLIMGCDIAEEGGDNTVVVL------RRG 339
P P+++G D A +VVVL
Sbjct: 392 AFSLKQLMACVGNSKKWTDFDPTWSRPYAMKPVVIGFDPARTRDIASVVVLSLPLGPDDK 451
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + S D T ++I L KY I +D G + ++
Sbjct: 452 FRLLESLNLSGNDFETMASEIKELTLKYHVVHIGVDTTGMGLGVFELIQK 501
>gi|329122644|ref|ZP_08251223.1| terminase [Haemophilus aegyptius ATCC 11116]
gi|327472658|gb|EGF18087.1| terminase [Haemophilus aegyptius ATCC 11116]
Length = 202
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 56/158 (35%), Gaps = 19/158 (12%)
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLV 364
P + +G D A G +V++ + H + D T ++I
Sbjct: 16 RPFGNREVWLGYDPAFTGDRAALVIVAPPKVEGGDYRVLHKQTFHGMDYETQASRIKQFC 75
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL 424
+ Y I+ID G+ + V + E+ + + E+ +K + +
Sbjct: 76 DDYNVTRIVIDKTGMGSGVYQEVRKFYPMVQGL---------EYNADLKNEMVLKTQNLI 126
Query: 425 EFASL---INHSGLIQNLKSLKSFIVPNTGELAIESKR 459
+ L + ++ + ++K + TG++ S R
Sbjct: 127 QKRRLKFDSGDNDIVSSFMTVKK-RITGTGKITYVSDR 163
>gi|83954308|ref|ZP_00963028.1| terminase, large subunit, putative [Sulfitobacter sp. NAS-14.1]
gi|83841345|gb|EAP80515.1| terminase, large subunit, putative [Sulfitobacter sp. NAS-14.1]
Length = 408
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 64/423 (15%), Positives = 114/423 (26%), Gaps = 73/423 (17%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGIS---------VICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ + G V + + Q++ +
Sbjct: 16 IMGGRGAGKTRAGA---EWVRAQVEGSRPLDAGRCRRVALVGETIEQVREVM-------- 64
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ S + W + + ++ P+ G
Sbjct: 65 --IFGDSGILACSPADRRPDWEATRKRLVWPN-----GAVATVHTAHDPEGLRGPQFD-- 115
Query: 193 MAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + + L + +T+ P R G + P
Sbjct: 116 -AAWVDELAKWKKAEETWDQLQFAL-RLGEDPRACVTTTP-RNVGVLKNLLASPSTV-TT 171
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ SF E + ARY + + R E+ G + IE R+
Sbjct: 172 HAPTEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEGALWTSERIEAGRVRDV 230
Query: 311 CPDPYAPLIMGCDIA---EEGGDNTVVVLRRGPVIEHLFDWS----------KTDLRTTN 357
+++G D A G D +V+ DW
Sbjct: 231 PL--LDRIVVGLDPATTAGAGADECGIVVVGAQTQGPPQDWRAVVLADCTVQGATPSGWA 288
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNRRTE 415
+E+Y D ++ + N G + L + V V + V R E
Sbjct: 289 RAAISAMEQYGADRLVAEVNQGGQMVAEVLRQVDPLVPVKSVHASRGKV-------ARAE 341
Query: 416 LHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + ++ L + + G +G S D D L++
Sbjct: 342 PVAALYEQGRVGHVVGLDALEDQMC-----RMTARGY--------EGGGSPDRVDALVWA 388
Query: 476 FAE 478
E
Sbjct: 389 LHE 391
>gi|169344384|ref|ZP_02865357.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
gi|169297509|gb|EDS79616.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
Length = 415
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 51/334 (15%), Positives = 107/334 (32%), Gaps = 37/334 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
G G GK+ +++ PG + + + LK +++A L W
Sbjct: 31 GGGGSGKSHFVVQKMIYKYLKYPGRKCLVVRKVNSTLKESIFA-----LFRSVLSDWQIY 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
++ ++ +K E+ + G + I+ +E +
Sbjct: 86 DECKINKTDLTIELP-------NKSLFIFKGIDDPEKIKSIAGIDD-----IVVEECTEI 133
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK---PLDDWKRFQIDTRTVEG 260
+ + L +N + NP S Y+ + K D + +
Sbjct: 134 DEFDFDQLNLRLRSKNPYNQIHVMFNPVSKSNWVYKRWFKNGYDTKDTIVLHTTYKNNKF 193
Query: 261 IDPSFHEGIIARYGLDSDVT-RVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAP 317
+ + + ++ + D+ V R+ G+F +D I N EE+ + + +
Sbjct: 194 LPKDYIDSLL-KLEKDNPVYFRIYALGEF--ATLDKLIYTNWKEESFDYKEILKNNRNTK 250
Query: 318 LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD-----LRTTNNKISGLVEKYRPDAI 372
I D V + + L+ + + KI L YR + I
Sbjct: 251 AIFSLDFGYTNDPTAFVCSIIDKINKKLWIFDEFQEKGLLNDEIAEKIIDL--GYRKEVI 308
Query: 373 IIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ D+ ++ + L+ G RV G + D
Sbjct: 309 VCDS--AEPKSIEELKRNGLS--RVKGAVKGRDS 338
>gi|166012063|ref|ZP_02232961.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|167427125|ref|ZP_02318878.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|2996304|gb|AAC13184.1| P-loop protein [Yersinia pestis KIM 10]
gi|165988997|gb|EDR41298.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|167053876|gb|EDR63708.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
Length = 402
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 48/321 (14%), Positives = 102/321 (31%), Gaps = 46/321 (14%)
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132
+P FK + AGR GK+ L+ ++ + V +A + + LW ++ + L
Sbjct: 5 QSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQMARQILWDDLQEVL 63
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
P W ++ I K+ S + ++PDT G
Sbjct: 64 -----------------PRKWVRKKNDTTMTIVLKNGSEIALK-GADKPDTLRGV---AL 102
Query: 193 MAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-------KP 244
++ DE PD + L+ ++ P+ +F++++ +
Sbjct: 103 HFVVLDEFQDMKPDTWYKVLRPTLSS--TRGGALIIGTPKG-FSEFHKLWTIGQNKDLQR 159
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
WK +Q T + + E +D E F + P +
Sbjct: 160 KGQWKSWQFVTADSPFVPSAEIEAAKND--MDPKSFAQEYLASFENMSGRVYYPFD--RN 215
Query: 305 ALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-----TDLRTTNNK 359
+ +P P+ +G D D V+ + L+ + ++ ++
Sbjct: 216 VHVKPLQFNPKLPIWVGQD---FNIDPMSSVILQPQPNGELWAVDEVVLFSSNTAEVCDE 272
Query: 360 ISGLVEKYRPD-AIIIDANNT 379
+ +++ I D
Sbjct: 273 LERRFWRWKSQVTIFPDPAGA 293
>gi|323146172|gb|ADX32410.1| terminase ATPase subunit [Cronobacter phage ENT90]
Length = 587
Score = 56.7 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 27/176 (15%)
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE-----------PCPDPYAPLIMGCDI 324
+ + +F + S P ++ + P P Y P+ +G D
Sbjct: 357 SPSEYQNLLMCEFVDDEA-SVFPFAELQTCMIDSLEEWSDFNPYLPRPFDYRPVWIGYDP 415
Query: 325 AEEGGDN--TVVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
+ G V+ L G L W D I L +KY + I +DA
Sbjct: 416 SHTGDSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATG 475
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
G + A ++ + +T + +K D + L +G
Sbjct: 476 IGQGVFQLVRQ---------FYPAAREIRYSPEVKTAMVLKAKDTISSGRLEYDAG 522
>gi|119869106|ref|YP_939058.1| phage terminase [Mycobacterium sp. KMS]
gi|119695195|gb|ABL92268.1| phage Terminase [Mycobacterium sp. KMS]
Length = 489
Score = 56.7 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 63/373 (16%), Positives = 108/373 (28%), Gaps = 71/373 (19%)
Query: 41 KGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW 100
KGT PR WQ++ + V +V P RG GKTTL+A ++L+
Sbjct: 41 KGTGAREVFRPREWQMDIVRDVLDSGARTVGLMMP----------RGQGKTTLSAAILLY 90
Query: 101 LMSTR-PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
+ TR G +V+ A E Q SL +Q + Y
Sbjct: 91 IFFTRGEGANVVLFAVDERQ------------ASLAFRVAARMVQLSEDLSSRCYVYADK 138
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
L + Y M P + +A + DEA + +
Sbjct: 139 LVLPLTDSTYQVM--------PASAAAAEGLDYVACLCDEAGVINRDVFEVAQLA-QGKR 189
Query: 220 ANRFWIMTSNPRRLSGK--------FYEIFNKPLDD-WKRFQIDTRTV---------EGI 261
I P + W+ F E
Sbjct: 190 ERSVLIAIGTPGPDPNDQVLADLRAYAAEHPDDKSLVWREFSAAGFEDHGADCPHCWELA 249
Query: 262 DPSFHEGIIAR--------YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+P+ + + ++ R QF +F+P + E P P
Sbjct: 250 NPALDDFLHRDALHALLPPKTREATFRRAR-LCQFSTDTDGAFLPAGVWEGLSTSSPVP- 307
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRR---GPVIEHLFDWS-------KTDLRTTNNKISGL 363
P +++ D GD T +++ P + + W + + + I
Sbjct: 308 PGVDVVLALD-GSYNGDTTALLVGTVSAEPHFDVVQVWDPKGDPDYRVPVAEVEDVIRRS 366
Query: 364 VEKYRPDAIIIDA 376
++++ II D
Sbjct: 367 AKEWQVVEIIADP 379
>gi|171316543|ref|ZP_02905759.1| protein of unknown function DUF264 [Burkholderia ambifaria MEX-5]
gi|171098271|gb|EDT43077.1| protein of unknown function DUF264 [Burkholderia ambifaria MEX-5]
Length = 583
Score = 56.7 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 20/137 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAP------- 317
E + Y +D + QF + S PL ++ + + D + P
Sbjct: 346 LERLKLEY--SADEYANLLLCQFIDDSL-SVFPLATLQTCMVDTWEVWDDFKPLYLRPFG 402
Query: 318 ---LIMGCDIAEEGGDNTVVVLRR----GPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
+ +G D + G VVL G L F W D +I L +YR
Sbjct: 403 DEEVWIGYDPSHTGDSAGCVVLAPPKYPGGKFRVLERFQWHGLDFEAQAAQIEALTRRYR 462
Query: 369 PDAIIIDANNTGARTCD 385
I ID G
Sbjct: 463 VTYIGIDTTGIGQGVYQ 479
>gi|331646084|ref|ZP_08347187.1| terminase, ATPase subunit [Escherichia coli M605]
gi|331044836|gb|EGI16963.1| terminase, ATPase subunit [Escherichia coli M605]
Length = 588
Score = 56.7 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVDDFA-SVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|213419227|ref|ZP_03352293.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 442
Score = 56.7 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 23/139 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 282 LDQLRMEY--SPDEYQNLLMCEFID-DLASVFPLSELQACMVDSWEVWTDFQALALRPFG 338
Query: 315 YAPLIMGCDIAE--EGGDNT---VVVL--RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ V+ G L W D R + I L +
Sbjct: 339 WREVWIGYDPAKGTQNGDSAGCVVIAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 398
Query: 366 KYRPDAIIIDANNTGARTC 384
+Y I ID+ G
Sbjct: 399 QYNVTYIGIDSTGVGHGVY 417
>gi|120436787|ref|YP_862473.1| phage terminase large subunit [Gramella forsetii KT0803]
gi|117578937|emb|CAL67406.1| phage terminase large subunit [Gramella forsetii KT0803]
Length = 506
Score = 56.7 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 66/210 (31%), Gaps = 35/210 (16%)
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY--RPDA 371
+ D+A G D V+ L G I L K+ + ++I + K+
Sbjct: 296 KAGEKYITVDVATSGKDKLVIWLWEGFRIRDLMKIDKSTGKDIIDEIKAMALKWGVPNRR 355
Query: 372 IIIDANNTGA--RTCDYLEMLGYHVYRVLG-QKRAVDLEFCRNRRTELHVKMADWLEFAS 428
I DAN GA D + + + D +N +T+ +V + +E
Sbjct: 356 IAYDANGVGAFIGGADNAFIPNSIAFDSNNRPRETKDGRKFKNLKTQCYVLSGERVERNE 415
Query: 429 L----------INHSGLIQNLKSLKSFIVPNTGE--------LAIESKRVKG--AKSTDY 468
+ + I+ + + + + E + K +STD
Sbjct: 416 IWVMPQVANMMFDEKQTIRQRMLAERKAIKKQPKKDEEPQALIKKEEMKAKYLNGESTDL 475
Query: 469 SDGLMY----------TFAENPPRSDMDFG 488
D M T ++ ++FG
Sbjct: 476 LDPFMMREIFELEPPITISKPTKPKGLNFG 505
>gi|331672362|ref|ZP_08373153.1| terminase, ATPase subunit [Escherichia coli TA280]
gi|331070557|gb|EGI41921.1| terminase, ATPase subunit [Escherichia coli TA280]
Length = 588
Score = 56.7 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y LD + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEYSLDE--YQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|323190958|gb|EFZ76225.1| terminase, ATPase subunit [Escherichia coli RN587/1]
Length = 591
Score = 56.7 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 20/168 (11%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY + + F DS + +
Sbjct: 328 PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NDATFNMLYMCVFVDSK-DSVFSFSDL 384
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLF 346
E + P + G D A G + V++ + +
Sbjct: 385 EACGVEIDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVIIAPPMLAVEKFRVLKVI 444
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
W + R +I L +KY + +D G D ++ V
Sbjct: 445 YWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGVFDNIQHFAMRV 492
>gi|204929563|ref|ZP_03220637.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204321282|gb|EDZ06482.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 588
Score = 56.7 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFID-DLASVFPLSELQACMVDSWEVWTDFQALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L +
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|167647878|ref|YP_001685541.1| hypothetical protein Caul_3918 [Caulobacter sp. K31]
gi|167350308|gb|ABZ73043.1| protein of unknown function DUF264 [Caulobacter sp. K31]
Length = 439
Score = 56.7 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 73/451 (16%), Positives = 133/451 (29%), Gaps = 67/451 (14%)
Query: 37 PWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTL-NA 95
PW E ++W V +AH V+ +F GRG GKT +
Sbjct: 33 PWTELAPWPVVQDGLKTW-----RVTEAHQKPPVDPWITWLFL----GGRGAGKTFAGAS 83
Query: 96 WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
W+ +PG ++ + + ++ + + + L W +
Sbjct: 84 WIAN---QAKPGRNLALVGPTFHDVREVM----------IEGPSGIKSLYLPGDRPKWQA 130
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVG--HHNTYGMAIINDEASGTPDVINL-GIL 212
+ + +S E PD G H DE P +L
Sbjct: 131 SRRRLEFRN-----GAIAQAFSAEDPDALRGPQFHAA-----WADEFCAWPKPAETLAML 180
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
F + ++T+ P R + +P + + + + P+F +
Sbjct: 181 RFGLRLGTDPRLVVTTTP-RPIRALRNLIAEPGAV-QTRAPTSANADHLAPAFLSTLRGL 238
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI-AEEGGDN 331
YG + E+ G + + A R P + +++ D A GD
Sbjct: 239 YGGT-RLAAQELDGLIVEG-EGGLFRAEDL--ARCRGAPPAAFDRVVVAIDPPATATGDA 294
Query: 332 T--VVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
VV R G L D + + ++ DA++ +AN G L
Sbjct: 295 CGIVVCGRFGDRAFVLADRTAKGLSPNGWARRAVDAAVRFDADALVAEANQGGDMVRSVL 354
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIV 447
V K +V L+ + + + + L S
Sbjct: 355 -AQAAPPCPVKLVKASVGKRARAEPVAALYEQGRV-VHCGAFPALEEELMALGS------ 406
Query: 448 PNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
G+L S D +D L++ +E
Sbjct: 407 ---GDL---------GHSPDRADALVWALSE 425
>gi|99080642|ref|YP_612796.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
gi|99036922|gb|ABF63534.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
Length = 416
Score = 56.7 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 51/307 (16%), Positives = 93/307 (30%), Gaps = 37/307 (12%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
G G GKT + + P A + ++ T W V H
Sbjct: 27 GGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTV------DEAAHSLGF 80
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ +D S + +T+CR S + P VG + DE
Sbjct: 81 TTKVKS-----ADKEVEFYRGRSYYGTTICR--SMDDPGGIVGFKIARAL---VDE---I 127
Query: 204 PDVINLGILGFLTERNANRFWIM------TSNPRRLSG--KFYEIFNK-PLDDWKRFQID 254
+ + A ++ G Y+ F + P ++ Q
Sbjct: 128 DILSKDKAQAAWRKIIARMRLVLPGVVNGIGVTTTPEGFRFVYDSFKREPKSNYSMVQAS 187
Query: 255 TRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
T E + P + ++ Y ++ + + G+F + +
Sbjct: 188 TYENEAFLPPDYISTLLEDY--PEELIKAYLMGEFVNLTSGTVY-RSYDRLRHRSTQSIQ 244
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
P PL +G D G +VV ++RG + + T + I L ++Y +
Sbjct: 245 PREPLHIGQDF-NVGNMASVVFVQRGEDWHAVDELQGLQ--DTPHLIEVLCDRYEGHHLT 301
Query: 374 I--DANN 378
I DA+
Sbjct: 302 IYPDASG 308
>gi|296104758|ref|YP_003614904.1| terminase, ATPase subunit [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295059217|gb|ADF63955.1| terminase, ATPase subunit [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 572
Score = 56.7 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 332 LDQLRMEY--SPDEYQNLLMCEFID-DLASVFPLSELQACMVDSWEVWADFQALALRPFG 388
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L +
Sbjct: 389 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 448
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 449 QYNVTYIGIDSTGVGHGVYENVK 471
>gi|146311014|ref|YP_001176088.1| hypothetical protein Ent638_1356 [Enterobacter sp. 638]
gi|145317890|gb|ABP60037.1| protein of unknown function DUF264 [Enterobacter sp. 638]
Length = 254
Score = 56.7 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 14 IDQLRMEY--SPDEYQNLLMCEFID-DLASVFPLSELQVCMVDSWEVWSDFHALALRPFG 70
Query: 315 YAPLIMGCDIAEE---GGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ G VV+ G L W D R + I L +
Sbjct: 71 WREVWIGYDPAKGTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 130
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 131 QYNVTYIGIDSTGVGHGVYENVK 153
>gi|55163155|emb|CAH61098.1| large terminase subunit [Yersinia enterocolitica subsp. palearctica
Y11]
Length = 202
Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 40/129 (31%), Gaps = 15/129 (11%)
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGL 363
P Y P+ MG D + G VV+ G L W D I L
Sbjct: 16 EQPFNYHPVWMGYDPSHTGDSAGCVVMAPPWVPGGKFRILERHQWKGMDFADQAESIKKL 75
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
EKY + I IDA G + A ++ + +T + +K D
Sbjct: 76 TEKYNVEYIGIDATGIGQGVYQLVR---------NFFPAAREIRYSAEVKTNMVLKAKDL 126
Query: 424 LEFASLINH 432
+ L
Sbjct: 127 ITTGRLEYD 135
>gi|200389255|ref|ZP_03215867.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|199606353|gb|EDZ04898.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
Length = 591
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 69/211 (32%), Gaps = 28/211 (13%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY ++ + F + DS + +
Sbjct: 328 PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYMCVFVD-NKDSVFSFSDL 384
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLF 346
E + P + G D A G + V++ + +
Sbjct: 385 EACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVIVAPPMFAVEKFRVLKVI 444
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
W + R +I L +KY + +D G D ++ V AV +
Sbjct: 445 YWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGVFDNIQHFAMRV--------AVAI 496
Query: 407 EFCRNRRTELHVKMADWLEFASLINHSGLIQ 437
+ N + +L +K AD +E + L +
Sbjct: 497 RYDLNTKNQLVLKAADVVESQRIEWDKNLKE 527
>gi|194443211|ref|YP_002041983.1| hypothetical protein SNSL254_A2937 [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194401874|gb|ACF62096.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
Length = 591
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 69/211 (32%), Gaps = 28/211 (13%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY ++ + F + DS + +
Sbjct: 328 PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYMCVFVD-NKDSVFSFSDL 384
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLF 346
E + P + G D A G + V++ + +
Sbjct: 385 EACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVIVAPPMFAVEKFRVLKVI 444
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
W + R +I L +KY + +D G D ++ V AV +
Sbjct: 445 YWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGVFDNIQHFAMRV--------AVAI 496
Query: 407 EFCRNRRTELHVKMADWLEFASLINHSGLIQ 437
+ N + +L +K AD +E + L +
Sbjct: 497 RYDLNTKNQLVLKAADVVESQRIEWDKNLKE 527
>gi|324009700|gb|EGB78919.1| hypothetical protein HMPREF9532_00529 [Escherichia coli MS 57-2]
Length = 588
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRIEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|168752369|ref|ZP_02777391.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4113]
gi|168756331|ref|ZP_02781338.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4401]
gi|168770046|ref|ZP_02795053.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4486]
gi|168775976|ref|ZP_02800983.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4196]
gi|168782400|ref|ZP_02807407.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4076]
gi|168799001|ref|ZP_02824008.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC508]
gi|195938306|ref|ZP_03083688.1| Phage protein P [Escherichia coli O157:H7 str. EC4024]
gi|208807993|ref|ZP_03250330.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4206]
gi|208814612|ref|ZP_03255941.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4045]
gi|208819940|ref|ZP_03260260.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4042]
gi|209400321|ref|YP_002271352.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4115]
gi|254793895|ref|YP_003078732.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
TW14359]
gi|187768594|gb|EDU32438.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4196]
gi|188013771|gb|EDU51893.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4113]
gi|189000116|gb|EDU69102.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4076]
gi|189356443|gb|EDU74862.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4401]
gi|189360957|gb|EDU79376.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4486]
gi|189378450|gb|EDU96866.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC508]
gi|208727794|gb|EDZ77395.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4206]
gi|208735889|gb|EDZ84576.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4045]
gi|208740063|gb|EDZ87745.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4042]
gi|209161721|gb|ACI39154.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4115]
gi|254593295|gb|ACT72656.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
TW14359]
gi|326344901|gb|EGD68646.1| Phage terminase, ATPase subunit [Escherichia coli O157:H7 str.
1125]
Length = 590
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 351 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 407
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 408 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 467
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 468 VEYIGIDATGLGVGVFLLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG- 517
Query: 429 LINHSGLIQNLKS---LKSFIVPNTGE 452
+ + ++ S + ++G
Sbjct: 518 CLEYDVSATDITSSFMAIRKTMTSSGR 544
>gi|213620832|ref|ZP_03373615.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 130
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 22/103 (21%)
Query: 404 VDLEFCRNRRTELHVKMADWLE-FASLINHSG--LIQNLKSL----------------KS 444
+ +F N + + +AD + IN+ L+ L S+
Sbjct: 19 PNKDFFANLKAQAWWLVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPH 78
Query: 445 FIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 79 RDFDRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 121
>gi|213027436|ref|ZP_03341883.1| Phage protein P [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
Length = 222
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 39/140 (27%), Gaps = 20/140 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 81 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 137
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 138 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 197
Query: 369 PDAIIIDANNTGARTCDYLE 388
+ I IDA G +
Sbjct: 198 VEYIGIDATGLGVGVFQLVR 217
>gi|213026708|ref|ZP_03341155.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 143
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 22/103 (21%)
Query: 404 VDLEFCRNRRTELHVKMADWLE-FASLINHSG--LIQNLKSL----------------KS 444
+ +F N + + +AD + IN+ L+ L S+
Sbjct: 32 PNKDFFANLKAQAWWLVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPH 91
Query: 445 FIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 92 RDFDRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 134
>gi|29144574|ref|NP_807916.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|29140212|gb|AAO71776.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 588
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 23/139 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFID-DLASVFPLSELQACMVDSWEVWTDFQALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDNT---VVVL--RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ V+ G L W D R + I L +
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVIAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 464
Query: 366 KYRPDAIIIDANNTGARTC 384
+Y I ID+ G
Sbjct: 465 QYNVTYIGIDSTGVGHGVY 483
>gi|76788305|ref|YP_329267.1| prophage LambdaSa03, terminase, large subunit [Streptococcus
agalactiae A909]
gi|76563362|gb|ABA45946.1| prophage LambdaSa03, terminase, large subunit, putative
[Streptococcus agalactiae A909]
Length = 471
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 58/346 (16%), Positives = 114/346 (32%), Gaps = 47/346 (13%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ + + +N N + + AI R GKT + L LW + G+ ++
Sbjct: 44 WQENML--IPMMAINEDNLWVHQKYGYAIP--RRNGKTEVVYILELWAL--HKGLKILHT 97
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A+ + + + +V K+L + + + + + A + S G + +
Sbjct: 98 AHRISTSHS-SFEKVKKYLEMS---GYVDGEDFISNKAKGQERIEFKSSGSVIQFRT--- 150
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR- 232
RT + + F +I DEA + +T+ + N IM P
Sbjct: 151 RTSNGGLGEGFD--------LLIIDEAQEYTSEQESALKYTVTDSD-NPMTIMCGTPPTM 201
Query: 233 -LSGKFYEIFNKP-------LDDWKRFQIDTRTVEGIDPSF------------HEGIIAR 272
+G +E + K W + +D S+ I A
Sbjct: 202 VSTGTVFESYRKECLKGDRRYSGWAEWSVDEMQPIHDVKSWYVANPSMGYHLNERKIEAE 261
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G +P + S I + L E P+ + L +G ++G +
Sbjct: 262 LGEDEIDHNIQRLGYWPSFNQKSVISEKEWAK--LKVEQVPELKSKLFVGIKFGQDGNNV 319
Query: 332 T-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + R + +R I ++ ++ID
Sbjct: 320 SLSIAARASENKVFVEAIDCLSIRNGTQWIINFLKSADIAKVVIDG 365
>gi|194450112|ref|YP_002047236.1| hypothetical protein SeHA_C3493 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194408416|gb|ACF68635.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
Length = 591
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 20/168 (11%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY ++ + F DS + +
Sbjct: 328 PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYMCVFVDSK-DSVFSFSDL 384
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLF 346
E + P + G D A G + V++ + +
Sbjct: 385 EACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVIVAPPMFAVEKFRVLKVI 444
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
W + R +I L +KY + +D G D ++ V
Sbjct: 445 YWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGVFDNIQHFAMRV 492
>gi|320177430|gb|EFW52430.1| Phage terminase, ATPase subunit [Shigella dysenteriae CDC 74-1112]
Length = 588
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQACMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQAYAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|317152051|ref|YP_004120099.1| hypothetical protein Daes_0328 [Desulfovibrio aespoeensis Aspo-2]
gi|316942302|gb|ADU61353.1| protein of unknown function DUF264 [Desulfovibrio aespoeensis
Aspo-2]
Length = 428
Score = 56.3 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/333 (15%), Positives = 95/333 (28%), Gaps = 41/333 (12%)
Query: 79 KGAISAGRG-IGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ ++ GKT L+ ++ T R +A Q KT +W E+ ++
Sbjct: 21 RFSVLVCHRRFGKTVLSVNRLIRAARTTSRTDWRGAYIAPLYKQAKTVVWDELKRY---- 76
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+ ++ + +D R + E PD+ G +
Sbjct: 77 -CGLGLDGCTVKFNETELRADF----------DNGARIRLFGAENPDSLRGMYLDGA--- 122
Query: 196 INDEASGTPDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL--DDWKRFQ 252
+ DE + P + I L++R + PR + Y ++ DW
Sbjct: 123 VFDEVAQMPHRVWTEVIRPALSDRMGWAMF--IGTPRGKNA-LYRLWQDARRDPDWFAAM 179
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
I+P + + E F ++ I E
Sbjct: 180 YRASQTGIIEPGELAAAARE--MSPEEYEQEFECSFTAAIRGAYFSALIGEADKGGRITK 237
Query: 313 DPYAPLIMGCDIAEEGG--DNTVVVL---RRGPVIEHLFDWSKTDL------RTTNNKIS 361
P+ P + A + G D+T + R G + + + R + +
Sbjct: 238 VPHDP-SLPVHTAWDLGMSDSTAIWFVQARPGNAFAIVDYYEASGEGLDHYARVLDERRY 296
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
P I + TG + LG
Sbjct: 297 AYGSHIAPHDIRVRELGTGKSRLEIARALGIRF 329
>gi|324115391|gb|EGC09344.1| terminase [Escherichia coli E1167]
Length = 492
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 39/140 (27%), Gaps = 20/140 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + +D + +F S P ++ +
Sbjct: 322 IEQLKRE--NSADDFKNLFMCEFVDDKA-SVFPFEELQRCMVDTLEEWEDYAPFAANPFG 378
Query: 317 --PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL G L W D T I L EKY
Sbjct: 379 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 438
Query: 369 PDAIIIDANNTGARTCDYLE 388
+ I IDA G +
Sbjct: 439 VEYIGIDATGLGVGVFQLVR 458
>gi|323185221|gb|EFZ70586.1| terminase, ATPase subunit [Escherichia coli 1357]
Length = 588
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFVD-DLASVFPLSELQAGMVDSWEVWTDFHALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ VVV G L W D R + I L E
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTE 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGHGVYENVK 487
>gi|315655961|ref|ZP_07908859.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
gi|315490025|gb|EFU79652.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
Length = 460
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 73/432 (16%), Positives = 123/432 (28%), Gaps = 73/432 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GKT A LV PG + +A E+ +++ +
Sbjct: 62 TGRGWGKTRTAAELVRDWAK-NPGTQIAVVAKKESLVRSICF---------EHKTSGLLH 111
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE-ASG 202
A + + + K+ ST+ + E PD G DE A+
Sbjct: 112 VIPKSDQARFNASGGSGRFFLQLKNGSTI-YGFGAEVPDNLRGFAFDKA---WFDEFAAW 167
Query: 203 TPDVINLGILGFLTE-RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
+ R + ++ S + ++ +KP R + +
Sbjct: 168 NKQTAQEVYDMMWYDLRESPSPQMVISTTPKPLKHVRDLVSKPGVVITRGH-TKDNLPNL 226
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
E + YG + R E+ G+ + + + + ++ + R P +++G
Sbjct: 227 SAIALEKLERDYGKT-RLGRQELAGELIESIEGALWDVTMFQDPVFRPDTMPPLEDIVVG 285
Query: 322 CDIA---EEGGDNTVV---------------VLRRGPVIEHLFDWSKTDLRTTNNKISGL 363
D A EG D T L G ++E + R K L
Sbjct: 286 VDPAVRSSEGADMTAFTVAARAEDAPGMFPDHLNHGYILEAIQGH--YTPRDAMAKAGEL 343
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEML--GYHVYRVLG-----QKRAVDLEFCRNRRTEL 416
KY ++++ANN G L+M+ G V + R
Sbjct: 344 ARKYGASRVVLEANNGGEYLPTVLQMVAPGVPWKIVHAQQDKRGRAMPVATLYEQGRIHH 403
Query: 417 HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD----GL 472
+ L + V TG G KS D D L
Sbjct: 404 Y---------GGAEKFEDLESQM-------VTYTG--------AAGEKSPDLLDSMVWAL 439
Query: 473 MYTFAENPPRSD 484
F D
Sbjct: 440 TELFLSPVGHGD 451
>gi|94970433|ref|YP_592481.1| hypothetical protein Acid345_3406 [Candidatus Koribacter versatilis
Ellin345]
gi|94552483|gb|ABF42407.1| protein of unknown function DUF264 [Candidatus Koribacter
versatilis Ellin345]
Length = 482
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 60/331 (18%), Positives = 109/331 (32%), Gaps = 54/331 (16%)
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
PDT G+H ++ DE G + + + S P +GKF+E
Sbjct: 123 NPDTVRGYHGD----VVLDE-FGFHRDAKKIYKAAIAIASRGYQLEVISTPNEQAGKFWE 177
Query: 240 IFNKP--------------LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
I W +D T ++ + D D + E C
Sbjct: 178 IAKAAGVPADGGSERTHWTKGVWSVHWLDIYTAVKEGCPIDVEVMRQACYDDDTWQQEYC 237
Query: 286 GQFPQQDIDSFIPLNIIEEALNR------EPCPDPYAPLIMGCDIAEEGGDNTVVVLR-- 337
F + +IP+ +I A ++ P L +G DI + D TV+ +
Sbjct: 238 CVFLADAQN-YIPMELIIAAESQMASLDARPEDLAGRELYLGMDIGRK-KDRTVIWIDEK 295
Query: 338 --RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+ + +T + + + R ID+ GA+ + LE
Sbjct: 296 LGDVMITRAVETLERTPFAKQFEQAAAWMPYVRRGC--IDSTGIGAQIGEDLERK----- 348
Query: 396 RVLGQKRAVDLEF-CRNRRTELHVKMADWLE--FASLINHSGLIQNLKSLKSFIVPNTGE 452
G + +EF N+ T + LE A + + + + ++K + P TG
Sbjct: 349 --FGAAKVEKVEFNIANKET-MAGLAKRKLEDRQARIPESPSIRRAINAVKRYTSP-TGH 404
Query: 453 LAIESKRVKGAKSTDYSD-----GLMYTFAE 478
++ R + ++D L + AE
Sbjct: 405 FRFDADRTEAG----HADEFWAFALCLSAAE 431
>gi|56414723|ref|YP_151798.1| phage gene [Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197363650|ref|YP_002143287.1| phage gene [Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
gi|56128980|gb|AAV78486.1| putative phage gene [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197095127|emb|CAR60674.1| putative phage gene [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 591
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 20/168 (11%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY ++ + F + DS + +
Sbjct: 328 PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYMCVFVD-NKDSVFSFSDL 384
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLF 346
E + P + G D A G + V++ + +
Sbjct: 385 EACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVIVAPPMFAVEKFRVLKVI 444
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
W + R +I L +KY + +D G D ++ V
Sbjct: 445 YWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGVFDNIQHFAMRV 492
>gi|262279834|ref|ZP_06057619.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262260185|gb|EEY78918.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 416
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/322 (16%), Positives = 98/322 (30%), Gaps = 50/322 (15%)
Query: 78 FKGAISAGRGIGKTTLNAW--------LVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
F+ A+ GR GKT L W +S + A + Q K W +
Sbjct: 10 FRDAV-CGRRFGKTFLAKAEMRRAARLAAKWNVSVEDE--IWYAAPTFKQAKRVFWKRLK 66
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ + PA W + + + + + R + D G
Sbjct: 67 QAI-----------------PASWRAGKPNETECSITLRSGHVIRVVGLDNYDDLRG--- 106
Query: 190 TYGMAIINDEASGTPDVIN-LGILGFLTE--------RNANRFWIMTSNPRRLSGKFYEI 240
+ +I DE + + L+ + + P+ Y+
Sbjct: 107 SGLFFLIIDEWADCKWAAWEEVLRPMLSTCKYVVNGVQRVGGHVLRIGTPKG-FNHCYDT 165
Query: 241 F--NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
F +P + +++G + E I+A+ +D E F F
Sbjct: 166 FMDGQPGHEPDCKSFSYTSLQGGNIPESEIIVAKRKMDPKTFSQEYEASFESYQGVIFYC 225
Query: 299 LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNN 358
N + A L +G D VV +RRG + + ++ +L T
Sbjct: 226 FNRLLSA--STETVQANDVLHVGMDFNVTKM-AAVVYVRRGEQMHAVDEF--VNLFDTPA 280
Query: 359 KISGLVEKYRPDAIII--DANN 378
I + E+Y I + DA+
Sbjct: 281 MIEAIQERYPDHEIAVYPDASG 302
>gi|308187132|ref|YP_003931263.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1]
gi|308057642|gb|ADO09814.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1]
Length = 587
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 54/176 (30%), Gaps = 27/176 (15%)
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE-----------PCPDPYAPLIMGCDI 324
+ + +F + S P ++ + P P Y P+ +G D
Sbjct: 357 SPAEYQNLLMCEFVDDEA-SVFPFAELQTCMIDSLEEWEDFNPYLPRPFAYRPVWIGYDP 415
Query: 325 AEEGGDN--TVVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
+ G V+ L G L W D I L +KY + I +DA
Sbjct: 416 SHTGDSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATG 475
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
G + A ++++ +T + +K D + L +G
Sbjct: 476 IGQGVFQLVRQ---------FYPAAREIKYSPEVKTAMVLKAKDTISSGRLEYDAG 522
>gi|221214652|ref|ZP_03587622.1| putative ATPase subunit of terminase (gpP-like) [Burkholderia
multivorans CGD1]
gi|221165542|gb|EED98018.1| putative ATPase subunit of terminase (gpP-like) [Burkholderia
multivorans CGD1]
Length = 583
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 44/137 (32%), Gaps = 20/137 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAP------- 317
E + Y +D + QF + S PL+ ++ + + D + P
Sbjct: 346 LERLKLEY--SADEYANLLLCQFIDDSL-SVFPLSALQPCMVDTWEVWDDFKPLYLRPFG 402
Query: 318 ---LIMGCDIAEEGGDNTVVVLRR----GPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
+ +G D + G VV+ G L F W D +I L +YR
Sbjct: 403 DEDVWIGYDPSHTGDSAGCVVVAPPKYPGGKFRVLERFQWHGLDFEAQAGQIEALTRRYR 462
Query: 369 PDAIIIDANNTGARTCD 385
I ID G
Sbjct: 463 VTYIGIDTTGIGQGVYQ 479
>gi|257460901|ref|ZP_05626002.1| transposase family protein [Campylobacter gracilis RM3268]
gi|257442232|gb|EEV17374.1| transposase family protein [Campylobacter gracilis RM3268]
Length = 518
Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 60/372 (16%), Positives = 117/372 (31%), Gaps = 61/372 (16%)
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS----EERPDTFVGHHNTYGMAIIN 197
E + ++ + ++ L S DS++ ++ + T G I
Sbjct: 171 EQARILMNYSQMWAKKLGVSFAKDSEYEKSLDNGATIRVMAHNFRTVQGFTGD----IWM 226
Query: 198 DEASGTPDV--INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW--KRFQI 253
DE + P+ I + + + S P + F E+F L + R ++
Sbjct: 227 DEFAWYPNQKRIWHAFVPSI--GAVAGRLTILSTPFEENSFFAELFGDELKFYMFSRHRV 284
Query: 254 DT-RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP-- 310
D R + G E + A + D+D QF + + + +++I+ ++
Sbjct: 285 DIYRAMAGGLKFDLETMRALF--DADTWASAYECQFVDDES-ALLGIDLIKSCVSDFTPT 341
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVV-VLRRGPVIEHL---FDWSKTDLRTTNNKISGLVEK 366
P P+ G D+ + + V G I+ L +K N ++ +
Sbjct: 342 LPPKNIPVFSGYDVGRTKDRSVHMGVYDAGEGIKRLCLYDVIAKASFEAQENLLTDFLRL 401
Query: 367 YRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
+ ID G + L+ V V + N + +
Sbjct: 402 NLLAYLKIDKTGIGMPVAERLKSRFTSRVSGVYFTASVKEA-LALNLKKHFED------K 454
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKS----TDY-----SD-----G 471
S+ N LI +L ++ KR G KS +D +D
Sbjct: 455 SISIPNDPLLIADLHAI---------------KRKAGQKSFLYDSDRNEHGHADRFWALA 499
Query: 472 LMYTFAENPPRS 483
L ++ E
Sbjct: 500 LALSYFEKVRER 511
>gi|152994622|ref|YP_001339457.1| hypothetical protein Mmwyl1_0587 [Marinomonas sp. MWYL1]
gi|150835546|gb|ABR69522.1| protein of unknown function DUF264 [Marinomonas sp. MWYL1]
Length = 601
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/267 (14%), Positives = 80/267 (29%), Gaps = 35/267 (13%)
Query: 244 PLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W++ I+ G D E + +D + ++ D +S L +
Sbjct: 345 PDKMWRQIVTIEDAEEGGCDLFDIEQLRDE--NSTDAFNNKYLCKWID-DANSVFTLAKL 401
Query: 303 EEALNREPCPDPYA----------PLIMGCDIAEEGGDNTV------VVLRRGPVIEHLF 346
+ Y P+ +G D + + ++ + +
Sbjct: 402 LSCMVDTETWTDYHKDAGQPFGNRPVAIGYDPSRTTDNASLALLSIPLGASDPWRLLKKD 461
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
W + + +I EK+ I ID + G + +E V +
Sbjct: 462 SWRGVNFQWQAARIKEEKEKHNVKHIGIDVSGIGRGVFELVEQFYRRVTPI--------- 512
Query: 407 EFCRNRRTELHVKMADWLEFAS---LINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+ +TEL +K D +E + Q + V + G++ + R
Sbjct: 513 TYSVQTKTELVLKALDLIENGLFKFSAGDKEVAQAFMMITK-KVTDNGQITYVANRSNAT 571
Query: 464 KSTDYSDGLMYTFAENP--PRSDMDFG 488
D + +M+ F P P+
Sbjct: 572 GHADVAWAIMHAFNYEPIAPKRKTTVA 598
>gi|170731562|ref|YP_001763509.1| hypothetical protein Bcenmc03_0207 [Burkholderia cenocepacia MC0-3]
gi|169814804|gb|ACA89387.1| protein of unknown function DUF264 [Burkholderia cenocepacia MC0-3]
Length = 583
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 20/137 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAP------- 317
E + Y +D + QF + S PL ++ + + D + P
Sbjct: 346 LERLKLEY--SADEYANLLLCQFIDDSL-SVFPLATLQTCMVDTWEVWDDFKPLYLRPFG 402
Query: 318 ---LIMGCDIAEEGGDNTVVVLRR----GPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
+ +G D + G VVL G L F W D +I L +YR
Sbjct: 403 DEEVWIGYDPSHTGDSAGCVVLAPPKYPGGKFRVLERFQWHGLDFEAQAAQIEALTTRYR 462
Query: 369 PDAIIIDANNTGARTCD 385
I ID G
Sbjct: 463 VTYIGIDTTGIGQGVYQ 479
>gi|262193957|ref|YP_003265166.1| hypothetical protein Hoch_0641 [Haliangium ochraceum DSM 14365]
gi|262077304|gb|ACY13273.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365]
Length = 478
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/287 (14%), Positives = 87/287 (30%), Gaps = 52/287 (18%)
Query: 227 TSNPRRLSGKFYEI----------FNKPLDDWKRFQIDTRTVEGIDPSF----HEGIIAR 272
S P G F+EI + W R + ++ E +A
Sbjct: 183 CSTPLGRRGIFWEISTEELRKYPHHTRDEVPWWRCRFFCIDIDRAMREAPHMPTEERVAA 242
Query: 273 YG-------LDS---DVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE--------PCPDP 314
+G LDS + + E F + S+ P +I + + P+P
Sbjct: 243 FGTQAIAQQLDSLALEDFQQEFECSFVDESY-SYYPYELILPCTSEDLVLAGDFTDLPEP 301
Query: 315 YAPLIMGCDIAEEGG-DNTVVVLRRGPV--IEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
++ G D+ V +G L + + + +++
Sbjct: 302 EGRIVAGFDVGRTRDHSELAVFEDKGGHFVCRLLRRYDQVPFAEQEADLRRFLDRVPVAR 361
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL---EFAS 428
+ ID + G + L V + N E L +
Sbjct: 362 LSIDQSGIGMHLAENLARDYAQVVG----------DTFTNDNKERWATDLKILFQRKDIV 411
Query: 429 LINHSGLIQNLKSLKSFIVPNTGELAIESKRV-KGAKSTDYSDGLMY 474
L L+ + S+K ++P+ G++ +++R +G + D +
Sbjct: 412 LPRDRELVGQIHSIKRRVLPS-GKVGFDAERSTRGGHA-DRFWAIAL 456
>gi|156976253|ref|YP_001447159.1| hypothetical protein VIBHAR_05025 [Vibrio harveyi ATCC BAA-1116]
gi|156527847|gb|ABU72932.1| hypothetical protein VIBHAR_05025 [Vibrio harveyi ATCC BAA-1116]
Length = 593
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/259 (13%), Positives = 70/259 (27%), Gaps = 53/259 (20%)
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDD 247
+ DE P D +N T +N + S P + + Y + + + D
Sbjct: 258 VYVDEYFWIPKFDELNKLASAMATHKNWRKT--YFSTPSAKTHQAYTFWTGDQWRQGRDT 315
Query: 248 WKRFQIDT----RTVEGIDPSF--------------------HEGIIARYGLDSDVTRVE 283
+ T R + P + + Y D
Sbjct: 316 RANIEFPTFDDYRDGGRLCPDKQWRYVVTIEDAAAGGCELFDIDELRDEYSKDD--FDNL 373
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV 333
F S + +E+A+ + P + +G D + + +
Sbjct: 374 FMCIFVDGAS-SVFKFSALEKAMVDISRWQDFKPNDNDPFDRREVWLGYDPSRTRDNACL 432
Query: 334 ------VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
+V + W + + ++S + E+Y + ID GA D L
Sbjct: 433 VVVAPPIVAIEKFRVLEKHYWRGLNFQYQAQQVSKVFERYNVSYLGIDTTGIGAGVYDLL 492
Query: 388 -EMLGYHVYRVLGQKRAVD 405
+ + + +
Sbjct: 493 SKKHPRETVAIQYSNESKN 511
>gi|261347084|ref|ZP_05974728.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
gi|282564814|gb|EFB70349.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
Length = 119
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 310 PCPDPYAPLIMGCDIAE--EGGDNT---VVV--LRRGPVIEHLFD--WSKTDLRTTNNKI 360
P Y P+ +G D A+ + GD+ V+ +R+G L W D R ++ I
Sbjct: 21 IRPYAYHPVWIGYDPAKGTQNGDSAGCVVIAPPMRKGDKFRILEHHQWRGMDFRAQSDAI 80
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEM 389
L E+Y I ID+ G +
Sbjct: 81 KELTERYNVQYIGIDSTGIGHGVLQNVRE 109
>gi|149909656|ref|ZP_01898309.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
PE36]
gi|149807360|gb|EDM67313.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
PE36]
Length = 601
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 58/350 (16%), Positives = 98/350 (28%), Gaps = 77/350 (22%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
IG T A+ + + A S Q AE+ K + + F ++
Sbjct: 181 IGATFYFAFEAFYDAVVNGRNKIFISA-SRDQ------AEIFKANIIALCREQFGIE--- 230
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-- 205
L +P + + K ST RT D + DE P
Sbjct: 231 LSGSPLTMRNKGKTTTLYFK--STNARTAQSASGD------------LYIDEVFWIPKFK 276
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLS--------GKFY---EIFNKP---------- 244
+ T ++ S P S G++Y + N P
Sbjct: 277 ELRSLAQAMATHKDFRIT--YFSTPSVTSHEAYDLWNGRWYRKTKACNDPEFAIDVSRKT 334
Query: 245 -------LDDWKRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
D R +++ V +G D + Y + +F +
Sbjct: 335 LKHGLLCDDGIWRQKLNVYDVVEQGFDRIDISMLENEYSKEE--FDNLFMCKFIDDAHSA 392
Query: 296 FIPLNIIEEALN----------REPCPDPYAPLIMGCDIAEEGGDNTVVVL------RRG 339
F L + + P P+++G D A +VVVL
Sbjct: 393 F-SLKQLMACVGNSKKWTDFDPTWSRPYAMKPVVIGFDPARTRDIASVVVLSLPLGPDDK 451
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + S D T ++I L KY I +D G + ++
Sbjct: 452 FRLLESLNLSGNDFETMASEIKELTLKYHVVHIGVDTTGMGLGVFELIQK 501
>gi|317049635|ref|YP_004117283.1| hypothetical protein Pat9b_3434 [Pantoea sp. At-9b]
gi|316951252|gb|ADU70727.1| protein of unknown function DUF264 [Pantoea sp. At-9b]
Length = 588
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 23/144 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y + + +F D+ S PL ++++ + P
Sbjct: 348 LDQLRMEY--SPPEYQNLLMCEFVD-DLASVFPLQLLQKCMVDSWEVWTDFEALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDNT---VVVL--RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ V+ G L W D R I L +
Sbjct: 405 WREVWIGYDPAKGTQNGDSAGCVVIAPPAVPGGKFRILERHQWRGMDFRAQAESIRKLTQ 464
Query: 366 KYRPDAIIIDANNTGARTCDYLEM 389
+Y I ID+ G + ++M
Sbjct: 465 QYNVTYIGIDSTGVGLGVYENVKM 488
>gi|293433090|ref|ZP_06661518.1| terminase [Escherichia coli B088]
gi|291323909|gb|EFE63331.1| terminase [Escherichia coli B088]
Length = 591
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 28/211 (13%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY ++ + F DS + +
Sbjct: 328 PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYMCVFVDSK-DSVFSFSDL 384
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVV------VLRRGPVIEHLF 346
E + P + G D A G + V + +
Sbjct: 385 EACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVIIAPPMYAAEKFRVLKVI 444
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+W + R +I L +KY + +D G D ++ V AV +
Sbjct: 445 NWKGMNFRYQARQIELLFKKYNFTYLGVDVTGIGQGVFDNIQHFAMRV--------AVAI 496
Query: 407 EFCRNRRTELHVKMADWLEFASLINHSGLIQ 437
+ N + +L +K AD +E + L +
Sbjct: 497 RYDMNTKNQLVLKAADVVESQRIEWDKNLKE 527
>gi|326782137|ref|YP_004322538.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM1]
gi|310004344|gb|ADO98737.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM1]
Length = 560
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 68/414 (16%), Positives = 130/414 (31%), Gaps = 65/414 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+Q E +E + N P GK+T +L + ++V
Sbjct: 60 DFQEELIESFHENRFNIAKLPRQ------------TGKSTTCVSYLLHYILFNDNVNVGI 107
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
LAN + + L + + Q + ++ + L SK
Sbjct: 108 LANKLSTARDLL----GRLQLAYEQLPLWLQQGIVVY------NKGSMELENGSK-ILAA 156
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI----NLGILGFLTERNANRFWIMTS 228
+ S R +F I DE + P+ I + +T + I+ S
Sbjct: 157 STSASAVRGMSFN--------IIFLDEFAFIPNHIAEQFFSSVYPTITS-GTSTKVIIIS 207
Query: 229 NPRRLSGKFYEIF---NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
P ++ FY+++ K + + ++ V G D + E IA E
Sbjct: 208 TPNGMN-HFYKLWVDAQKGRNGYAWSEVHWSKVPGRDAKWKEQTIANTSERQ--FTQEFD 264
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPC-----------PDPYAPLIMGCDIAEE--GGDNT 332
+F +D+ I + +P P I+ D++ +
Sbjct: 265 CEFL-GSVDTLITAAKLRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSA 323
Query: 333 VVVLRRGPVIEHLF-DWSKTDL--RTTNNKISGLVEKYRPDAIIIDANNTG----ARTCD 385
VV+ L + D+ N I + Y ++ + N+ G
Sbjct: 324 FVVIDITHAPWRLVAKYRDHDVRPMVYPNIIFNVATNYNKAYVLTEVNDIGEAVSGSLFY 383
Query: 386 YLEMLGYHVYRVLG-QKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
LE + + G + V F N+ ++ VKM+ ++ N LI++
Sbjct: 384 DLEYENVLMCAMRGRAGQIVGQGFSGNK-VQMGVKMSKTVKAQGCSNLKTLIED 436
>gi|218704209|ref|YP_002411728.1| putative Terminase, ATPase subunit from bacteriophage origin
[Escherichia coli UMN026]
gi|218431306|emb|CAR12184.1| Putative Terminase, ATPase subunit from bacteriophage origin
[Escherichia coli UMN026]
Length = 591
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 28/211 (13%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY ++ + F DS + +
Sbjct: 328 PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYMCVFVDSK-DSVFSFSDL 384
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVV------VLRRGPVIEHLF 346
E + P + G D A G + V + +
Sbjct: 385 EACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVIIAPPMYAAEKFRVLKVI 444
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+W + R +I L +KY + +D G D ++ V AV +
Sbjct: 445 NWKGMNFRYQARQIELLFKKYNFTYLGVDVTGIGQGVFDNIQHFAMRV--------AVAI 496
Query: 407 EFCRNRRTELHVKMADWLEFASLINHSGLIQ 437
+ N + +L +K AD +E + L +
Sbjct: 497 RYDMNTKNQLVLKAADVVESQRIEWDKNLKE 527
>gi|328912284|gb|AEB63880.1| SPBc2 prophage-derived uncharacterized protein yonF [Bacillus
amyloliquefaciens LL3]
Length = 589
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 62/431 (14%), Positives = 129/431 (29%), Gaps = 82/431 (19%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
A RG GKT L + PG ++ + ++ Q + +
Sbjct: 84 ASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVI-----------EKIDDLRK 132
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+S +L ++ + S + S + G + +I DE
Sbjct: 133 ESPNLRREIEDLKTSTNDAKVEFHNGSWIKIVASND------GARSKRANLLIVDEFRMV 186
Query: 204 P-DVINLGILGFLTERNANRFW-------IMTSNPR-RLSGKFYE---IFNKPLDDWKR- 250
++I+ + FLT + ++ + N LS +Y+ FN+ + +
Sbjct: 187 DFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSFNRFITYYNAM 246
Query: 251 ------------FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+QI + +D +A D +E+ + + ++
Sbjct: 247 MKGSKYFVCGLPYQIAIKEG-LLDKDQVRDEMAEEDFDPIGWSMEMEALWFGESEKAYFK 305
Query: 299 LNIIEEALN-------------------REPCPDPYAPLIMGCDIAEEGG---DNTVVVL 336
IE+ + P ++ DIA G D +V +
Sbjct: 306 FEDIEKNRKLASPLFPPDYYSLIKDSNFKYESKKPGEIRLVSNDIAGMAGKDNDASVYTV 365
Query: 337 RR--------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
R I ++ T +I + E Y D I++D + G D L
Sbjct: 366 FRLIPNSNGYDRHIVYMESIVGGHTGTQATRIRQIYEDYDCDYIVLDTQSIGLGVYDAL- 424
Query: 389 MLGYHVYRVLGQKRAVDLEFC---RNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSF 445
+ ++RA + E + R + + I + + + ++
Sbjct: 425 -----CQPLYDKERAKEYEPFSCINDERMAERCTYQNAEKVIYSIKGNAQLNSEIAVLLK 479
Query: 446 IVPNTGELAIE 456
G++ I
Sbjct: 480 DGFKRGKIKIP 490
>gi|326775607|ref|ZP_08234872.1| phage terminase, large subunit, PBSX family [Streptomyces cf.
griseus XylebKG-1]
gi|326655940|gb|EGE40786.1| phage terminase, large subunit, PBSX family [Streptomyces cf.
griseus XylebKG-1]
Length = 416
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 64/412 (15%), Positives = 127/412 (30%), Gaps = 49/412 (11%)
Query: 79 KGAISAGR-GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
+ I++G GKT + L+ W+M + A S +L A ++K + +
Sbjct: 23 RINIASGSIRAGKT--ISTLLRWIMY-------VATAPSGGEL-----AVIAKTTNTAAS 68
Query: 138 KHWFEMQSLSL-HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER-PDTFVGHHNTYGMAI 195
+ +Q +L P + + ++ R + G +
Sbjct: 69 NVFIPLQDPNLFGPLAQHVHYTRGAPTATILGRQVRVIGANDSRAEERLRGMTCAGAL-- 126
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD----DWKRF 251
DEA+ P +LG ++ A ++NP + F D + +
Sbjct: 127 -VDEATLVPQEFWTQLLGRMSVPGAK--LFASTNPGSPAHWLKRDFIDRRDELGIRYWHY 183
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+D + + I + R V G++ S + EE +
Sbjct: 184 VLD--DNPSLGDDYKNSIKNEF--VGLWYRRFVLGEWIA-AEGSIFDM-WDEEKHVVDTL 237
Query: 312 PDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
P+ + +G D + T++ L R + +W + D R +++ + R
Sbjct: 238 PEIAKWISVGVDYGQTNPFHATLLGLGRDRRLYAASEW-RYDGRQQRRQLTDIEYSERMR 296
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA------VDLEFCRNRRTELHVKMADWL 424
+ + G + V A + N + MA L
Sbjct: 297 GWLSNVAGIG-----PVRPQFVTVDPSAASFSAQLRRDRLTPTPANNAVLDGIRTMASLL 351
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS-DGLMYT 475
L+ HS + + + + A E + K D+ D L Y
Sbjct: 352 SAGKLVVHSSCKALIGEMPGYAWDDK---AAEKGEDRPIKVADHGVDALRYA 400
>gi|171779706|ref|ZP_02920662.1| hypothetical protein STRINF_01543 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281808|gb|EDT47242.1| hypothetical protein STRINF_01543 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 470
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 55/350 (15%), Positives = 101/350 (28%), Gaps = 53/350 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ ++ V + + + GKT + L LW + G++++
Sbjct: 42 PWQQNLLKSVMGIEEDGLWTHQKFGYSIPRRN----GKTEIIYMLELWGL--YHGLNILH 95
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + + +V ++L + + S+ + +
Sbjct: 96 TAHRISTSHS-SFEKVKRYLEKMGLEDGKSFNSIRA--------KGQERIELYETGGVVQ 146
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT G ++ DEA + +T+ + N IM P
Sbjct: 147 YRT-RTSNGGLGEGFD-----LLVIDEAQEYTTEQESALKYTVTDSD-NPMTIMCGTPPT 199
Query: 233 L------SGKFYEIFNKPLDD---WKRFQIDTRT---------VEGIDPSFH---EGIIA 271
K+ E W + + FH I A
Sbjct: 200 PVSSGTVFTKYRETCLFGRGKYLGWAEWSVSEEKEIDDIDAWYNSNPSMGFHLNERKIEA 259
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D V+ G +P + S I AL + P L +G + G D
Sbjct: 260 ELGEDKLDHNVQRLGYWPTYNQKSAISETEW--NALKIDDLPQLQGQLFVGI---KYGQD 314
Query: 331 NT----VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
T V +R + +R N+ I +++ I+ID
Sbjct: 315 GTNVALSVAVRTKDKHIFVETVDCQSVRNGNHWIINFLKQADIAQIVIDG 364
>gi|262042498|ref|ZP_06015656.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259040136|gb|EEW41249.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 587
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL ++ + P
Sbjct: 347 LDQLRLEY--SPDEYQNLLMCEFID-DLASVFPLADLQACMVDSWEVWEDFQALALRPFG 403
Query: 315 YAPLIMGCDIAE--EGGDNT---VVVL--RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ V+ G L W D R I L +
Sbjct: 404 WREVWIGYDPAKGTQNGDSAGCVVIAPPTVPGGKFRILERHQWRGMDFRAQAEAIRKLTQ 463
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 464 QYNVTYIGIDSTGVGHGVYENVK 486
>gi|9630181|ref|NP_046608.1| hypothetical protein SPBc2p056 [Bacillus phage SPBc2]
gi|16079170|ref|NP_389994.1| prophage terminase, ATP subunit; phage SPbeta [Bacillus subtilis
subsp. subtilis str. 168]
gi|221310018|ref|ZP_03591865.1| hypothetical protein Bsubs1_11626 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314340|ref|ZP_03596145.1| hypothetical protein BsubsN3_11547 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319262|ref|ZP_03600556.1| hypothetical protein BsubsJ_11473 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323538|ref|ZP_03604832.1| hypothetical protein BsubsS_11602 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|81342066|sp|O31952|YONF_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized protein yonF
gi|2634531|emb|CAB14029.1| putative prophage terminase, ATP subunit; phage SPbeta [Bacillus
subtilis subsp. subtilis str. 168]
gi|3025534|gb|AAC13029.1| unknown [Bacillus phage SPbeta]
Length = 589
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 62/431 (14%), Positives = 129/431 (29%), Gaps = 82/431 (19%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
A RG GKT L + PG ++ + ++ Q + +
Sbjct: 84 ASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVI-----------EKIDDLRK 132
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+S +L ++ + S + S + G + +I DE
Sbjct: 133 ESPNLRREIEDLKTSTNDAKVEFHNGSWIKIVASND------GARSKRANLLIVDEFRMV 186
Query: 204 P-DVINLGILGFLTERNANRFW-------IMTSNPR-RLSGKFYE---IFNKPLDDWKR- 250
++I+ + FLT + ++ + N LS +Y+ FN+ + +
Sbjct: 187 DFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSFNRFITYYNAM 246
Query: 251 ------------FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+QI + +D +A D +E+ + + ++
Sbjct: 247 MKGSKYFVCGLPYQIAIKEG-LLDKDQVRDEMAEEDFDPIGWSMEMEALWFGESEKAYFK 305
Query: 299 LNIIEEALN-------------------REPCPDPYAPLIMGCDIAEEGG---DNTVVVL 336
IE+ + P ++ DIA G D +V +
Sbjct: 306 FEDIEKNRKLASPLFPPDYYSLIKDSNFKYEGKKPGEIRLVSNDIAGMAGKDNDASVYTV 365
Query: 337 RR--------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
R I ++ T +I + E Y D I++D + G D L
Sbjct: 366 FRLIPNSNGYDRHIVYMESIVGGHTGTQATRIRQIYEDYDCDYIVLDTQSIGLGVYDAL- 424
Query: 389 MLGYHVYRVLGQKRAVDLEFC---RNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSF 445
+ ++RA + E + R + + I + + + ++
Sbjct: 425 -----CQPLYDKERAKEYEPFSCINDERMAARCTYQNAEKVIYSIKGNAQLNSEIAVLLK 479
Query: 446 IVPNTGELAIE 456
G++ I
Sbjct: 480 DGFKRGKIKIP 490
>gi|190893406|ref|YP_001979948.1| hypothetical protein RHECIAT_CH0003832 [Rhizobium etli CIAT 652]
gi|190698685|gb|ACE92770.1| hypothetical protein RHECIAT_CH0003832 [Rhizobium etli CIAT 652]
Length = 443
Score = 55.1 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 60/384 (15%), Positives = 109/384 (28%), Gaps = 53/384 (13%)
Query: 84 AGRGIGKTTLNAWLVLW---------LMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
AGR GKT L + ++T ++ +A S Q K
Sbjct: 34 AGRRSGKTRAAGTLAGYVATLVDHSAYLATSERATIPVMAASTVQ--------AQKAFQA 85
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE-ERPDTFVGHHNTYGM 193
+ S + + S+ + D + RT P +
Sbjct: 86 CMVLEESSLLSKQIESS--NSETIKLKTRCDIEVRPANHRTIRGITSPLAIA-----DEV 138
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI---FNKPLDDWKR 250
A + T I + L N + S+P G+ Y+ + P D
Sbjct: 139 AFYFTDGQNTDSQILDAVRPSLQSGNHAGPLVCISSPYAKRGELYDAFKNHHGPNGDAHV 198
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-- 308
++E I Y + V E G F + D+ + L +E A +
Sbjct: 199 IVAKGASLEFNSTIDPATIARAYKRNPTVADAEYGGNF-RSDVTNLFTLEAVEAATDLGV 257
Query: 309 -EPCPDPYAPLIMGCDIAEE-GGDNTVVVLRRGPVIEHLFDWSKT-----DLRTTNNKIS 361
E P D A G D + + + D + + T +
Sbjct: 258 TERAPREGVQYFAHADPAGGSGADGFTLAIGHRENNVAVIDLIRERKSPYNPETVVADYA 317
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
L+ YR ++ DA + R +K ++ + +E +
Sbjct: 318 DLLRLYRCATVVTDAYAS-------------EWNRAAWRKAGIEPKSAPMTASEFFAALV 364
Query: 422 DWLEFA--SLINHSGLIQNLKSLK 443
+ +L++ L L L+
Sbjct: 365 PAVNSGQVALLDDETLKHQLVGLE 388
>gi|228904911|ref|ZP_04068965.1| hypothetical protein bthur0014_60350 [Bacillus thuringiensis IBL
4222]
gi|228854925|gb|EEM99529.1| hypothetical protein bthur0014_60350 [Bacillus thuringiensis IBL
4222]
Length = 954
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 62/426 (14%), Positives = 117/426 (27%), Gaps = 83/426 (19%)
Query: 92 TLNAWLVLWLMSTRPGISV------ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
T+ A ++ + G + + + Q + ++ ++ + + N +
Sbjct: 442 TMCAHMLWVAFTCNGGTRMAKGAACVVATPYDNQAR-LIFDQLK---TFIDNNPVLQESI 497
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
S+ P+ V+ G + ++ R+ SE + G + + DE D
Sbjct: 498 KSITKNPY---VIEFKNGSVIRLFTAGTRSGSE--GGSLRGQRADW---LYMDEVDYMGD 549
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL-------------------- 245
I + E ++ S P G FY+ +
Sbjct: 550 KDFESIFAIVNEAPDRIGCMIASTPTGRRGMFYKTCTQMKLNQDVKMNKNNVYDMRSYNR 609
Query: 246 ---DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ W F T P + + EV +F + + F + +
Sbjct: 610 TLSEGWAEFYFPTMVNPEWGPKMERELRKLFSE--AAYEHEVLAEFGTEMVGVF-NKDYV 666
Query: 303 EEA----LNREPCPDPYAPLIMGCDIAEEGGDNTVVVL---------------------- 336
+EA N P P+ +G D + G +VV
Sbjct: 667 DEASSIGYNYTTSPTHDGPIAIGIDWDKAGAATQIVVTQYNPFEVRRPRPELGETEPSFG 726
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM-LGYHVY 395
R + + KI L Y P I DA G + L LG V
Sbjct: 727 RFQIINRIEIPKGEFTYDIAVKKIIELDGVYNPFGIYADA-GAGEYQIELLRKTLGDKVK 785
Query: 396 RVLGQKRAV--DLE----FCRNRRTELHVKMADWLEFASL-----INHSGLIQNLKSLKS 444
RV + D + + + + LE L L + + + +
Sbjct: 786 RVHLGSSQMVRDPHSREFEKKPLKAFIVDQTKLMLERGQLRIPHREKDETLARQMTNYQV 845
Query: 445 FIVPNT 450
Sbjct: 846 TRYSPK 851
>gi|109897022|ref|YP_660277.1| hypothetical protein Patl_0695 [Pseudoalteromonas atlantica T6c]
gi|109699303|gb|ABG39223.1| protein of unknown function DUF264 [Pseudoalteromonas atlantica
T6c]
Length = 577
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/250 (15%), Positives = 72/250 (28%), Gaps = 50/250 (20%)
Query: 195 IINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDD 247
+ DE D I G + ++ R S P S + Y + +N+ D
Sbjct: 241 LYVDEVFWMNDFNNIWHVAKGMASHKHWTRTL--ISTPSSKSHEAYTMWSGDRYNQGRKD 298
Query: 248 -----------------------WKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
W+ F ++ +G + + D
Sbjct: 299 EDKQELKVNHATLYGGHLAKDRIWRDFVTVEDAANDGCTLFDIDELKDE--NTPDEFDNL 356
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNRE---------PCPDPYAPLIMGCDIAEEGGDNTV- 333
+F F ++++ A +R+ P P + +G D A D T+
Sbjct: 357 YMCEFVDDSHSVFKLADLLKCATDRQHWKDYRERAPRPFLNRAVWLGYDPARSRDDATLA 416
Query: 334 -----VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V+ + + DLR +I + +++ I ID G D ++
Sbjct: 417 IVAPPVLPGEKFRVLERIYFKGKDLREQAVEIQKICKRFNVVHIGIDVTGIGWGVFDLVK 476
Query: 389 MLGYHVYRVL 398
V
Sbjct: 477 AFYPRVQGFH 486
>gi|322833247|ref|YP_004213274.1| hypothetical protein Rahaq_2540 [Rahnella sp. Y9602]
gi|321168448|gb|ADW74147.1| hypothetical protein Rahaq_2540 [Rahnella sp. Y9602]
Length = 595
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 48/162 (29%), Gaps = 20/162 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + + + RY D+ + F DS + +
Sbjct: 332 PDGQWRYVITMEDAVKGGFNRASIDKLRNRYNRDT--FNMLYMCVFVDSK-DSVFKFSDL 388
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV------VVLRRGPVIEHLF 346
E + P + G D A G +T + + LF
Sbjct: 389 EICGVDVADWQDHDPNAERPFGNREVWGGFDPARSGDTSTFAIVAPPLYAVEKFRVLCLF 448
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
W + +I L KY I +D G + +E
Sbjct: 449 HWKGMNFAYQAAQIKKLFGKYNMTYIGVDVTGIGRGVFELIE 490
>gi|320087122|emb|CBY96890.1| Terminase, ATPase subunit GpP [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 589
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 31/201 (15%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL----NREPCPDPYA-------PLIM 320
R + + +F S P ++ + P+A P+ +
Sbjct: 355 RRENSDEDFKNLFMCEFVDDKA-SVFPFEELQRCMVDVMETWEDFAPFADHPFGSRPVWI 413
Query: 321 GCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D + G VVL G L W D I L EKY + I I
Sbjct: 414 GYDPSHTGDSAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEAIRRLTEKYNVEYIGI 473
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
DA G + A + + +T + +K D + L +G
Sbjct: 474 DATGLGLGVFQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAG 524
Query: 435 ---LIQNLKSLKSFIVPNTGE 452
+ Q+ S++ + ++G
Sbjct: 525 ATDVTQSFMSIRK-TMTSSGR 544
>gi|238027334|ref|YP_002911565.1| phage terminase ATPase subunit [Burkholderia glumae BGR1]
gi|237876528|gb|ACR28861.1| Phage terminase ATPase subunit [Burkholderia glumae BGR1]
Length = 605
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/297 (14%), Positives = 75/297 (25%), Gaps = 57/297 (19%)
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLG 210
D + S G + T RT D + DE + +N
Sbjct: 239 LTGDPMRLSNGAELIFLGTSSRTAQSYNGD------------LYFDEYFWVSNFATLNKV 286
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEI---FNKPLDDWKRFQID------TRTVEGI 261
+G T + T + + FN+ D +R +ID +
Sbjct: 287 AMGMATHSHLRMTHFSTPSTTTHEAYPFWTGAHFNRDRADDERVEIDISHTSLAPGRQCG 346
Query: 262 DPSFHEGIIARYGLDSDV----------------TRVEVCGQFPQQDIDSFIPLNIIEEA 305
D + + + A + S QF S +++
Sbjct: 347 DGQWRQIVTAEDAVASGFTKLDLEDLRSTNSPADFENLYMCQFVDDTS-SVFAFRLVQAC 405
Query: 306 LN-----------REPCPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDW 348
+ P + + +G D A G VV+ + W
Sbjct: 406 MVDSWDVWTDVKPLLDRPFGWKQVWIGYDPALTGDSAGCVVIAPPEQPNGKFRVLERHRW 465
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
D T KI L ++Y I ID G + V + +
Sbjct: 466 KGIDFETQAEKIRELTQRYHVTYIAIDTTGIGHGVHQLVRQFFPRVVPINYSPEVKN 522
>gi|222149246|ref|YP_002550203.1| hypothetical protein Avi_3048 [Agrobacterium vitis S4]
gi|221736230|gb|ACM37193.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 452
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/241 (18%), Positives = 71/241 (29%), Gaps = 22/241 (9%)
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRR 232
T PDT G + DE + D I + +++ R TS P
Sbjct: 114 TALPANPDTARGFSAN----VFLDEFAFHKDSQQIWRALFPVISKGWNIRV---TSTPNG 166
Query: 233 LSGKFYEIFNKPLDD-WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
S KFYE+ P+DD W R +D + D D E ++ +
Sbjct: 167 KSNKFYELATGPIDDPWSRHVVDIYQAVRDGLPRDIEELRAGLADEDSWAQEFELKWLDE 226
Query: 292 DID----SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIE 343
I E A +P +G DI D V+ +
Sbjct: 227 ASAWLSYDLISSCEDERA--GDPEGYQGNVCFVGRDIGRR-EDLHVIWVWEQIGDVLWER 283
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKR 402
+ + + ++ +YR ID G + + + G V VL
Sbjct: 284 ERIEQKRATFAEMDEAFDDVMTRYRVGRACIDQTGMGEKVTEDAQIRYGSRVEGVLFTGP 343
Query: 403 A 403
Sbjct: 344 N 344
>gi|88858953|ref|ZP_01133594.1| Mu-like prophage FluMu protein gp28 [Pseudoalteromonas tunicata D2]
gi|88819179|gb|EAR28993.1| Mu-like prophage FluMu protein gp28 [Pseudoalteromonas tunicata D2]
Length = 593
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 43/142 (30%), Gaps = 19/142 (13%)
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----I------PLNIIEEALN 307
G D + Y +D +F +F I + L
Sbjct: 350 NSGFDRIDISVLENEY--STDEFNNLFMCKFIDDAHSAFNLKQIMDCVGDSTKWTDFNLE 407
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEHL--FDWSKTDLRTTNNKIS 361
P P+++G D A G +V V ++ G L D S D ++I
Sbjct: 408 -WERPFALRPVVIGFDPARFGDKASVAVLSAPMKPGEKFRLLEAIDLSGNDFEAMASEIK 466
Query: 362 GLVEKYRPDAIIIDANNTGART 383
L +KY I +D G
Sbjct: 467 LLTDKYNVQHIGVDTTGIGYGV 488
>gi|290474053|ref|YP_003466928.1| hypothetical protein XBJ1_0997 [Xenorhabdus bovienii SS-2004]
gi|289173361|emb|CBJ80138.1| putative phage gene [Xenorhabdus bovienii SS-2004]
Length = 594
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/239 (14%), Positives = 64/239 (26%), Gaps = 52/239 (21%)
Query: 198 DEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP----------- 244
DE PD N T + S P + Y ++
Sbjct: 258 DEYFWIPDFKRFNEVASAMATHDHWRTT--YFSTPSAKTHPAYSLWTGDEWRGNDPKRKN 315
Query: 245 --LDDWKRFQIDTRTVE----------------GIDPSFHEGIIARYGLDSDVTRVEVCG 286
+ + R G + + + + +Y DS +
Sbjct: 316 VAFPAFDELRDGGRDCPDGQWRYVITLEDAIKGGFNLASIDRLRNKYNPDS--FNMLFMC 373
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL 336
F S + +++ + +AP + G D A G +T V++
Sbjct: 374 VFVDSGA-SVFTYSQVDKCGVDINLWEDHAPNASRPFGEREVWGGFDPARSGDTSTFVIV 432
Query: 337 ------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ F W + + I L ++YR I ID G + ++
Sbjct: 433 APPMMANEAFRVLATFYWQGMNWKHQAKLIEELFKRYRFTHIGIDTTGIGHGVYEMVQD 491
>gi|320198795|gb|EFW73395.1| Phage terminase, ATPase subunit [Escherichia coli EC4100B]
Length = 603
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 17/135 (12%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP---------CPDPYA 316
E + +Y + QF F ++ ++R P
Sbjct: 356 IERLRNKYSPT--AFAMLYMCQFVDSKDAVFKFSALVGCEVDRATWGDFDLTATRPFGNR 413
Query: 317 PLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
+ G D + G ++T V++ + ++ W + ++I L+ ++
Sbjct: 414 EVWAGFDPSRSGDNSTFVLIAPPIEDGERFRVLAVWQWQGFNFSWQADQIKQLMRRFNIT 473
Query: 371 AIIIDANNTGARTCD 385
I ID G D
Sbjct: 474 YIGIDTTGIGKGVYD 488
>gi|193062794|ref|ZP_03043887.1| putative conserved hypothetical protein [Escherichia coli E22]
gi|192931437|gb|EDV84038.1| putative conserved hypothetical protein [Escherichia coli E22]
Length = 603
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 17/135 (12%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE---------PCPDPYA 316
E + +Y + QF F ++ ++R P
Sbjct: 356 IERLRNKYSPT--AFAMLYMCQFVDSKDAVFKFSALVGCEVDRATWGDFDLTAARPFGNR 413
Query: 317 PLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
+ G D + G ++T V++ + ++ W + ++I L+ ++
Sbjct: 414 EVWAGFDPSRSGDNSTFVLIAPPIEDGERFRVLAVWQWQGFNFSWQADQIKQLMRRFNIT 473
Query: 371 AIIIDANNTGARTCD 385
I ID G D
Sbjct: 474 YIGIDTTGIGKGVYD 488
>gi|89071120|ref|ZP_01158320.1| Putative large terminase [Oceanicola granulosus HTCC2516]
gi|89043331|gb|EAR49553.1| Putative large terminase [Oceanicola granulosus HTCC2516]
Length = 444
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 61/418 (14%), Positives = 114/418 (27%), Gaps = 67/418 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGIS---------VICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ + G V + + Q + +
Sbjct: 58 ILGGRGAGKTRAGA---EWVRAQVEGPRATDPGRARRVALVGETIDQAREVMV------- 107
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
F L P + + +S P+ G
Sbjct: 108 --------FGDSGLLACAPPDRRPEWIAGRRLLVWPNGAQAQLFSAHDPEALRGPQFD-- 157
Query: 193 MAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + + L + R + R + + + +
Sbjct: 158 -AAWVDELAKWKKAEEAWDMLQLALRLGDDPR--CCVTTTPRPTALMRALLERD-GTART 213
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ +F + RY S + R E+ G + + I A N +
Sbjct: 214 HAPTEANAANLARAFLAEVRRRY-AGSPLGRQELDGVMLSEIEGALWSAGAI-AAANCDV 271
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTT-NNKIS 361
PD + +++ D + GGD +V+ L D S TT
Sbjct: 272 VPDLH-RVVVAVDPSAGGGDVCGIVVAGACYDGGADNWRAWVLEDASVAGSSTTWARAAI 330
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
E+++ D I+ + N G L + G + L+ +
Sbjct: 331 AAYERHQADRIVAEVNQGGDMVAAMLRQV-APTVPYKGVRAMRGKAARAEPVAALYEQGR 389
Query: 422 -DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + L + + + +G S D +D L++ +E
Sbjct: 390 VRHVRGLGALEDQ---MALMTHQGY---------------RGRGSPDRADALVWALSE 429
>gi|167553298|ref|ZP_02347048.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205322236|gb|EDZ10075.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 589
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 50/310 (16%), Positives = 90/310 (29%), Gaps = 67/310 (21%)
Query: 195 IINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPL-- 245
+ DE P+ + G ++++ S P L+ Y E+FNK
Sbjct: 250 LYVDEIFWIPNFQKLRKVASGMASQKHLRST--YFSTPSTLAHGAYPFWSGELFNKGRAS 307
Query: 246 ----------------------DDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
W++ I+ G + + + +
Sbjct: 308 AADRIEIDISHSALAGGLLCADGQWRQIVTIEDALASGCTLFDLDQLRRE--NSDEDFKN 365
Query: 283 EVCGQFPQQDIDSFIPLNIIEEAL----NREPCPDPYA-------PLIMGCDIAEEGGDN 331
+F S P ++ + P+A P+ +G D + G
Sbjct: 366 LFMCEFVDDKA-SVFPFEELQRCMVDVMETWEDFTPFADHPFGSRPVWIGYDPSHTGDSA 424
Query: 332 TVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
VVL G L W D I L EKY + I IDA G
Sbjct: 425 GCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNVEYIGIDATGLGLGVFQ 484
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQNLKSL 442
+ A + + +T + +K D + L +G + Q+ S+
Sbjct: 485 LVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDVTQSFMSI 535
Query: 443 KSFIVPNTGE 452
+ + ++G
Sbjct: 536 RK-TMTSSGR 544
>gi|83943173|ref|ZP_00955633.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
gi|83846181|gb|EAP84058.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
Length = 408
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 64/423 (15%), Positives = 113/423 (26%), Gaps = 73/423 (17%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGIS---------VICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ + G V + + Q++ +
Sbjct: 16 IMGGRGAGKTRAGA---EWVRAQVEGSRPLDAGRCRRVALVGETIEQVREVM-------- 64
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ S + W + + ++ P+ G
Sbjct: 65 --IFGDSGILACSPADRRPDWEATRKRLVWPN-----GAVATVHTAHDPEGLRGPQFD-- 115
Query: 193 MAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + + L + +T+ P R G + P
Sbjct: 116 -AAWVDELAKWKKAEETWDQLQFAL-RLGEDPRVCVTTTP-RNVGVLKNLLASPSTV-TT 171
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ SF E + ARY + + R E+ G + IE R+
Sbjct: 172 HAPTEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEGALWTSERIEAGRVRDV 230
Query: 311 CPDPYAPLIMGCDIA---EEGGDNTVVVLRRGPVIEHLFDWS----------KTDLRTTN 357
+++G D A G D +V+ DW
Sbjct: 231 PL--LDRIVVGLDPATTAGAGSDECGIVVVGAQTQGPPQDWRAVVMADCTVQGATPSGWA 288
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNRRTE 415
+E+Y D ++ + N G + L + V V + V R E
Sbjct: 289 RAAISAMEQYGADRLVAEVNQGGQMVAEVLRQVDPLVPVKSVHASRGKV-------ARAE 341
Query: 416 LHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + + L + + + TG S D D L++
Sbjct: 342 PVAALYEQGRVGHVAGLDALEDQMCRMTARGYEATG-------------SPDRVDALVWA 388
Query: 476 FAE 478
E
Sbjct: 389 LHE 391
>gi|224582696|ref|YP_002636494.1| hypothetical protein SPC_0883 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467223|gb|ACN45053.1| putative phage protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
Length = 591
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 51/168 (30%), Gaps = 20/168 (11%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY ++ + F DS + +
Sbjct: 328 PDGQWRYVITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYMCVFVDSK-DSVFSFSDL 384
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLF 346
E + P + G D A G + V++ + +
Sbjct: 385 EACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVIVAPPMFAVEKFRVLKVI 444
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
W + R +I L +KY + +D G D ++ V
Sbjct: 445 YWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGIFDNIQHFAMRV 492
>gi|170023192|ref|YP_001719697.1| hypothetical protein YPK_0943 [Yersinia pseudotuberculosis YPIII]
gi|169749726|gb|ACA67244.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
YPIII]
Length = 697
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 20/157 (12%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E + G F F + +E+ L + +
Sbjct: 367 IEELREENGES--AFNQLYMCLFVDTGDCVF-RFDQLEKCLVTVSNWEDHDVNAARPFGN 423
Query: 317 -PLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ G D A G + V++ + H+ W + +I + +Y
Sbjct: 424 REVWAGYDPARSGDTASFVLVAPPQADGEPFRVLHIETWHGFAFKYQVGRIKEYMARYNI 483
Query: 370 DAIIIDANNTGARTCDYLEML-GYHVYRVLGQKRAVD 405
I ID+ G C+ ++ V ++ + +
Sbjct: 484 THIGIDSTGIGGPVCELVQEFARREVTQIHYSPESKN 520
>gi|317153313|ref|YP_004121361.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
gi|316943564|gb|ADU62615.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
Length = 507
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 60/394 (15%), Positives = 110/394 (27%), Gaps = 69/394 (17%)
Query: 38 WGEKGTPLEGFSAPRSW--QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA 95
WG+ S W Q+E + + + ++ GR +GK+ + +
Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCLARNIIHLD--------------GRDVGKSIVLS 65
Query: 96 WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
L T G + A + L + + E+ L P+ M S+++
Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHLDSII-EEIEYQLDTNPD----LMNSIAVTKYGKPK 120
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
++ + S + + D+F H + DE + + + L
Sbjct: 121 IHRKPYFRLEFTNGSVLYFRPAGAYGDSFRSLHVGR---VWVDEGAWLTERAWKALRQCL 177
Query: 216 TERNANRFWIMTSNPRRL-SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
R + S P L +Y + D + F+ + ++ YG
Sbjct: 178 KTGGILRIY---STPNGLRDTTYYRL--TSSDQFHVFRWPSWLNPLWTEDRESELLEFYG 232
Query: 275 -LDSDVTRVEVCGQFPQQDIDSF-----------------IPLNIIE--------EALNR 308
DS + EV G+ + +F I + E A +R
Sbjct: 233 GRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRDCDTEEAAHDR 292
Query: 309 -----EPCPDPYAPLIMGCDIAEEGGDNTVVVL-------RRGPVIEHLFDWSKTDLRTT 356
P I G D+ ++V R +
Sbjct: 293 MEMLLNLTPRSGQFWIGG-DLGYTNDPTEIIVFQEMEVGERTLLKMILRVHLEHVSYPHI 351
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
+ L Y P I +D G L L
Sbjct: 352 AQIFALLERYYTPAGIGVDNGGNGLAVVQELLTL 385
>gi|159044464|ref|YP_001533258.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12]
gi|157912224|gb|ABV93657.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12]
Length = 260
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 52/294 (17%), Positives = 89/294 (30%), Gaps = 62/294 (21%)
Query: 35 FFPWGE-------KGTPLEGFSA--PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAG 85
PW E + L + P WQ+E A+ G
Sbjct: 6 LIPWAEDLERRLDPVSRLTHWMGHAPDPWQVEAFTTRATE--------------VALRVG 51
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
R GKT++ A + + P +C+A +E Q K + E+ + L
Sbjct: 52 RQSGKTSVLAARAVEELHV-PESLTLCVAPAERQAK-IIAREIGRQLQRTS--------- 100
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP-DTFVGHHNTYGMAIINDE----- 199
++ + R + DT G +I DE
Sbjct: 101 -----------LVINRPTQTELEIANGARVIALPSTSDTIRGF--PAVSCLIIDECAFLQ 147
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQIDTRT 257
G + + +L LTE +S P + F +F KP D R +
Sbjct: 148 GDGGGEDLISSVLPMLTEDGQ---VFFSSTPAGKNNYFARLFLDAKPGDGIHRIVVRGTD 204
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ + R L + R E+ + ++ L+IIE+A ++
Sbjct: 205 IPRLADKVERM---RRTLSATKFRQEILVEMLADGQ-AYFDLSIIEQATSKTEK 254
>gi|323527775|ref|YP_004229928.1| bacteriophage terminase ATPase subunit [Burkholderia sp. CCGE1001]
gi|323384777|gb|ADX56868.1| bacteriophage terminase, ATPase subunit [Burkholderia sp. CCGE1001]
Length = 588
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/170 (14%), Positives = 47/170 (27%), Gaps = 21/170 (12%)
Query: 247 DWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
W++ ++ G + + + Y + + QF S L ++
Sbjct: 330 QWRQIVTVEDAARAGCNLFNLDELRREY--SDEEYANLLMCQFIDDTA-SIFTLANLQRC 386
Query: 306 LN-----------REPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGP--VIEHLFDW 348
+ P + P+ +G D A G VV + G + W
Sbjct: 387 MVDSWELWADYKPLAARPFAWHPVWVGYDPALSGDSAGCVVVAPPMVEGGPFRVLEKHQW 446
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
D I + E+Y + ID G ++ V
Sbjct: 447 RGLDFEAQAQSIKEITERYNVAYMAIDTTGIGQGVYQLVKQFYPRVVAFN 496
>gi|103487487|ref|YP_617048.1| hypothetical protein Sala_2004 [Sphingopyxis alaskensis RB2256]
gi|98977564|gb|ABF53715.1| protein of unknown function DUF264 [Sphingopyxis alaskensis RB2256]
Length = 436
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 66/407 (16%), Positives = 124/407 (30%), Gaps = 56/407 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AGRG GKT A V T PG + +A + L E
Sbjct: 56 AGRGFGKTRTGAEWVRAFAETTPGARIALVA--------------ASLLEARQVMVEGES 101
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L++ P + SL + + YS PD+ G + A DE +
Sbjct: 102 GLLAIAPDHLRPEY-ESSLRRLTWPNGAVATLYSAVEPDSLRGPEHD---AAWCDEIAKW 157
Query: 204 P--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
P + ++ + A + T+ PR + + +
Sbjct: 158 PKGEAAWDNLMLTM-RIGARPQVVATTTPRCV--PLVRRLIQERGVATTRGRTASNRRNL 214
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
+ + A YG + R E+ G+ + D+ +IE +A +++G
Sbjct: 215 SVQWLATMDAIYGGT-RLGRQELDGELLEDVEDALWTRALIERCRVDAGSIGKFARVVIG 273
Query: 322 CD-IAEEGGDNTVVV----LRRGPVIEHLFDWS-KTDLRTTNNKISGLVEKYRPDAIIID 375
D A GGD +V LR G + + + ++ ++ + ++ +
Sbjct: 274 VDPPASAGGDACGIVVAALLRDGRLAVVEDASALRPLPGVWAQAVAAAAARWGAERVVAE 333
Query: 376 ANNTGARTCDYLEM--LGYHVYRVLGQKRAVDLEFCRNRRTE---LHVKMADWLEFASLI 430
+N G L + V + RR E L + + +
Sbjct: 334 SNMGGDMVAAVLRQADMTLPVVAIHASVGKA-------RRAEPVALAYERGQVVHAGAFA 386
Query: 431 NHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
+ + L+ + P +S D +D ++ A
Sbjct: 387 DLEDQLCGLQMGGGYAGP--------------GRSPDRADACVWALA 419
>gi|254485756|ref|ZP_05098961.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
gi|214042625|gb|EEB83263.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
Length = 452
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 62/426 (14%), Positives = 118/426 (27%), Gaps = 79/426 (18%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGIS---------VICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ S G V + + Q++ +
Sbjct: 60 IMGGRGAGKTRAGA---EWVRSMVEGARPLDAGRCRRVALVGETIEQVREVM-------- 108
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ S + W + + ++ P+ G
Sbjct: 109 --IFGDSGILACSPADRRPDWEATRKRLVWPN-----GAVASVHTAHDPEGLRGPQFD-- 159
Query: 193 MAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + + L + +T+ PR + ++ K L
Sbjct: 160 -AAWVDELAKWKKAEETWDQLQFAL-RLGEDPRVCVTTTPRNV-----DVLKKLLASPST 212
Query: 251 FQIDTRT---VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
T + SF E + ARY + + R E+ G + ++E
Sbjct: 213 VTTHAPTEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEGALWTSEMLER--G 269
Query: 308 REPCPDPYAPLIMGCDIA---EEGGDNTVVVLRRGPVIEHLFDWS----------KTDLR 354
R + +++G D A G D +V+ +W
Sbjct: 270 RIEKLPTFDRIVVGVDPATTAGAGSDECGIVVVGAQTQGAPQNWRAVVLADCTAQGATPS 329
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNR 412
+E+Y D ++++ N G + L + + V + V
Sbjct: 330 GWARAAVSAMEQYGADRLVVETNQGGLMVGEVLRQIDPLVPLKSVHASRGKV-------A 382
Query: 413 RTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
R E + + + L + + + +G S D D L
Sbjct: 383 RAEPVAALYEQGRVGHVAGLVALEDQMCRMTARGFEGSG-------------SPDRVDAL 429
Query: 473 MYTFAE 478
++ E
Sbjct: 430 VWALHE 435
>gi|24112089|ref|NP_706599.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30062202|ref|NP_836373.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|24050918|gb|AAN42306.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30040447|gb|AAP16179.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|281600053|gb|ADA73037.1| putative bacteriophage protein [Shigella flexneri 2002017]
gi|332768291|gb|EGJ98476.1| hypothetical protein SF293071_0835 [Shigella flexneri 2930-71]
Length = 179
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 27/150 (18%)
Query: 295 SFIPLNIIEEALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SK 350
+ I L+ IE A++ + +P +G D+A+ G D V R G V+ +W +
Sbjct: 10 AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 69
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG------------YHVYRVL 398
+L + + + D I+ D+ GA + + R
Sbjct: 70 DELLKSCQRTYQAALEREAD-IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFN 128
Query: 399 GQ----------KRAVDLEFCRNRRTELHV 418
+ +F N + +
Sbjct: 129 AGAGVHEPDDEYNGIPNKDFFANLKAQAWW 158
>gi|75758280|ref|ZP_00738405.1| Hypothetical protein RBTH_06375 [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74494334|gb|EAO57425.1| Hypothetical protein RBTH_06375 [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 660
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 62/426 (14%), Positives = 117/426 (27%), Gaps = 83/426 (19%)
Query: 92 TLNAWLVLWLMSTRPGISV------ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
T+ A ++ + G + + + Q + ++ ++ + + N +
Sbjct: 148 TMCAHMLWVAFTCNGGTRMAKGAACVVATPYDNQAR-LIFDQLK---TFIDNNPVLQESI 203
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
S+ P+ V+ G + ++ R+ SE + G + + DE D
Sbjct: 204 KSITKNPY---VIEFKNGSVIRLFTAGTRSGSE--GGSLRGQRADW---LYMDEVDYMGD 255
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL-------------------- 245
I + E ++ S P G FY+ +
Sbjct: 256 KDFESIFAIVNEAPDRIGCMIASTPTGRRGMFYKTCTQMKLNQDVKMNKNNVYDMRSYNR 315
Query: 246 ---DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ W F T P + + EV +F + + F + +
Sbjct: 316 TLSEGWAEFYFPTMVNPEWGPKMERELRKLFSE--AAYEHEVLAEFGTEMVGVF-NKDYV 372
Query: 303 EEA----LNREPCPDPYAPLIMGCDIAEEGGDNTVVVL---------------------- 336
+EA N P P+ +G D + G +VV
Sbjct: 373 DEASSIGYNYTTSPTHDGPIAIGIDWDKAGAATQIVVTQYNPFEVRRPRPELGETEPSFG 432
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM-LGYHVY 395
R + + KI L Y P I DA G + L LG V
Sbjct: 433 RFQIINRIEIPKGEFTYDIAVKKIIELDGVYNPFGIYADA-GAGEYQIELLRKTLGDKVK 491
Query: 396 RVLGQKRAV--DLE----FCRNRRTELHVKMADWLEFASL-----INHSGLIQNLKSLKS 444
RV + D + + + + LE L L + + + +
Sbjct: 492 RVHLGSSQMVRDPHSREFEKKPLKAFIVDQTKLMLERGQLRIPHREKDETLARQMTNYQV 551
Query: 445 FIVPNT 450
Sbjct: 552 TRYSPK 557
>gi|17975126|ref|NP_536648.1| putative terminase, ATPase subunit [Vibrio phage K139]
gi|153820795|ref|ZP_01973462.1| terminase [Vibrio cholerae B33]
gi|165970256|ref|YP_001650887.1| putative terminase ATPase subunit [Vibrio phage kappa]
gi|229512054|ref|ZP_04401533.1| hypothetical protein VCE_003464 [Vibrio cholerae B33]
gi|229519190|ref|ZP_04408633.1| hypothetical protein VCC_003218 [Vibrio cholerae RC9]
gi|229607255|ref|YP_002877903.1| hypothetical protein VCD_002166 [Vibrio cholerae MJ-1236]
gi|254849294|ref|ZP_05238644.1| terminase [Vibrio cholerae MO10]
gi|17865408|gb|AAL47515.1|AF125163_21 orf16 [Vibrio phage K139]
gi|126521587|gb|EAZ78810.1| terminase [Vibrio cholerae B33]
gi|165292233|dbj|BAF98815.1| putative terminase ATPase subunit [Vibrio phage kappa]
gi|229343879|gb|EEO08854.1| hypothetical protein VCC_003218 [Vibrio cholerae RC9]
gi|229352019|gb|EEO16960.1| hypothetical protein VCE_003464 [Vibrio cholerae B33]
gi|229369910|gb|ACQ60333.1| hypothetical protein VCD_002166 [Vibrio cholerae MJ-1236]
gi|254844999|gb|EET23413.1| terminase [Vibrio cholerae MO10]
Length = 605
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 48/181 (26%), Gaps = 23/181 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ I+ G D E + Y F S N I
Sbjct: 345 PDKQWRYVVTIEDAAKGGCDLFDIEELREEYSETD--FNNLFMCVFVDGAS-SIFEFNKI 401
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV-------VVLRRGPVIEHL 345
E + Y P + +G D + DN V +V +
Sbjct: 402 ERCMVDSDIWQDYKPNAARPFGSREVWLGYDPSRT-RDNAVLMVVAPPIVAVEKFRVLEK 460
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQKRAV 404
W + ++IS + E++ + ID GA D L +
Sbjct: 461 HTWRGLSFQHQASEISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENK 520
Query: 405 D 405
+
Sbjct: 521 N 521
>gi|118475162|ref|YP_891824.1| hypothetical protein CFF8240_0649 [Campylobacter fetus subsp. fetus
82-40]
gi|261886523|ref|ZP_06010562.1| hypothetical protein CfetvA_16765 [Campylobacter fetus subsp.
venerealis str. Azul-94]
gi|118414388|gb|ABK82808.1| hypothetical protein CFF8240_0649 [Campylobacter fetus subsp. fetus
82-40]
Length = 523
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 54/344 (15%), Positives = 108/344 (31%), Gaps = 38/344 (11%)
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYS----EERPDTFVGHHNTYGMAIINDEASGTP 204
+ W + S DS+H + T G I DE + P
Sbjct: 183 YMRHWAKEYG-ISFKKDSEHEVVLENGAYIKSFANNFRTVQGFAGD----IWMDEFAWYP 237
Query: 205 DV--INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP--LDDWKRFQIDTRTVEG 260
+ I + + + S P F++I++ +KRF +
Sbjct: 238 NPKRIWHAFVPSI--GAIKGRLTILSTPFEERSLFHQIYSDKTKFHMFKRFCVSIYKAIE 295
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP---CPDPYAP 317
F + D+D QF + S + +++I+ ++ + P
Sbjct: 296 DGLDFDLETMRDL-FDTDTWASAYECQFVDDES-SLLSISLIKSCVDNKAHYFTPKSSEC 353
Query: 318 LIMGCDIAEEGGDNTV--VVLRRGPVIEHLFDW-SKTDLRTTNNKISGLVEKYRPDAIII 374
+ G D+ +T+ VVL G L D +K ++ ++ Y + I
Sbjct: 354 IYAGYDVGRVSDRSTLAGVVLENGVYKTALMDILAKARFEEQKEHLTSFLKTYPISVLKI 413
Query: 375 DANNTGARTCDYL-EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE--FASLIN 431
D G + + + V V + E+ + + E + N
Sbjct: 414 DKTGIGMNLAENMHDKFKSRVSGVWFSNTRKE---------EMALNLKKAFEDKLIKIPN 464
Query: 432 HSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
LI ++ ++K I + + ++KR + + D L
Sbjct: 465 DPLLIADIHAIKRTIGAKSFKY--DAKRNEYGHA-DRFWALALA 505
>gi|83643297|ref|YP_431732.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
gi|83631340|gb|ABC27307.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
Length = 581
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 72/391 (18%), Positives = 124/391 (31%), Gaps = 83/391 (21%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
IG T AW T + A S +Q A++ K L + +F+ +
Sbjct: 168 IGATYYFAWEAFQDAITSGDNQIFLSA-SRSQ------ADIFKAYILKFAREYFDTELKG 220
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ DV+ S G + + ST RT G+H + DE PD
Sbjct: 221 V-------DVIPLSNGAELRFVSTNGRTA--------QGYHGH----LYIDEVFWIPD-- 259
Query: 208 NLGILGFLTERNANRFW--IMTSNPRRLSGKFYEIF----------NK------------ 243
+ + A++ W S P S Y ++ +K
Sbjct: 260 FDRLNKLASGMAAHKKWRKTYFSTPSVKSHGAYTLWSGERYNESRRHKVEFDLSRAALRE 319
Query: 244 ----PLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
P W+ ++ +G D + + Y F + + F
Sbjct: 320 GQLGPDKVWRNVVTVEDAANQGCDLFDIDELKQEY--TEAEFNNLFMCAFMEAGLSVFKL 377
Query: 299 LNIIEEAL----------NREPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEH 344
+++ A+ R+P P P+ +G D A G +TVVV +
Sbjct: 378 DDLLSCAVCSSDVWPDFKPRQPRPFANYPVWLGYDPARTGDRSTVVVVAPPMHPAGKFRV 437
Query: 345 LFDWS-KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
L K N+I L+ +Y + ID G + ++ RA
Sbjct: 438 LEKIQLKGAFSYQANRIKDLLGRYNVQFVGIDCTGPGLGVFEQVKA---------FYPRA 488
Query: 404 VDLEFCRNRRTELHVKMADWLEFASLINHSG 434
+ + N +T L +K D +E A + +
Sbjct: 489 TPIHYSLNAKTALVLKAMDVIENARIEWDAE 519
>gi|12276099|gb|AAG50261.1|AF311654_1 probable terminase [Phage GMSE-1]
Length = 268
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 64/202 (31%), Gaps = 27/202 (13%)
Query: 267 EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP--------- 317
E + ++Y + + QF DS +E + P
Sbjct: 35 ERLRSKY--PARYFNMLYQCQFVDSG-DSVFSFGDLERCGVETVRWQDHQPNAARPFGNR 91
Query: 318 -LIMGCDIAEEGGDNTVVVLR----RGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPD 370
+ G D A G +T V++ G L W + + ++I L +Y
Sbjct: 92 EVWAGFDPARSGDTSTFVIMAPPQYEGERFRVLVTFYWQGMNWKYQASQIKALFARYHMT 151
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
I ID G+ + + ++ V + + +T + +KM D +E +
Sbjct: 152 HIGIDTTGIGSGV--------FEMVEAFAPRQTVAIRYGVETKTRMVLKMVDLVESKRIE 203
Query: 431 NHSGLIQNLKSLKSFIVPNTGE 452
+ S S +T +
Sbjct: 204 WDGEQKEIAASFLSIRRTSTAK 225
>gi|3337256|gb|AAC34148.1| terminase subunit [Enterobacteria phage 186]
Length = 589
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 31/201 (15%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY-----------APLIM 320
+ + + +F S P ++ + P+ +
Sbjct: 355 KRENSDEDFKNLFMCEFVDDKA-SVFPFEELQRCMVDVMEEWEDFAPFADHPFGSRPVWI 413
Query: 321 GCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D + G VVL G L W D + I L EKY + I I
Sbjct: 414 GYDPSHTGDSAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQADGIRKLTEKYSVEYIGI 473
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
DA G + A + + +T + +K D + L +G
Sbjct: 474 DATGLGLGVFQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAG 524
Query: 435 ---LIQNLKSLKSFIVPNTGE 452
+ Q+ S++ + ++G
Sbjct: 525 ATDVTQSFMSIRK-TMTSSGR 544
>gi|83649379|ref|YP_437814.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
gi|83637422|gb|ABC33389.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
Length = 581
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 72/391 (18%), Positives = 124/391 (31%), Gaps = 83/391 (21%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
IG T AW T + A S +Q A++ K L + +F+ +
Sbjct: 168 IGATYYFAWEAFQDAITSGDNQIFLSA-SRSQ------ADIFKAYILKFAREYFDTELKG 220
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ DV+ S G + + ST RT G+H + DE PD
Sbjct: 221 V-------DVIPLSNGAELRFVSTNGRTA--------QGYHGH----LYIDEVFWIPD-- 259
Query: 208 NLGILGFLTERNANRFW--IMTSNPRRLSGKFYEIF----------NK------------ 243
+ + A++ W S P S Y ++ +K
Sbjct: 260 FDRLNKLASGMAAHKKWRKTYFSTPSVKSHGAYTLWSGERYNESRRHKVEFDLSRAALRE 319
Query: 244 ----PLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
P W+ ++ +G D + + Y F + + F
Sbjct: 320 GQLGPDKVWRNVVTVEDAANQGCDLFDIDELKQEY--TEAEFNNLFMCAFMEAGLSVFKL 377
Query: 299 LNIIEEAL----------NREPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEH 344
+++ A+ R+P P P+ +G D A G +TVVV +
Sbjct: 378 DDLLSCAVCSGEVWPDFKPRQPRPFANYPVWLGYDPARTGDRSTVVVVAPPMHPAGKFRV 437
Query: 345 LFDWS-KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
L K N+I L+ +Y + ID G + ++ RA
Sbjct: 438 LEKIQLKGAFSYQANRIKDLLGRYNVQFVGIDCTGPGLGVFEQVKA---------FYPRA 488
Query: 404 VDLEFCRNRRTELHVKMADWLEFASLINHSG 434
+ + N +T L +K D +E A + +
Sbjct: 489 TPIHYSLNAKTALVLKAMDVIENARIEWDAE 519
>gi|237745794|ref|ZP_04576274.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229377145|gb|EEO27236.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 585
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 47/284 (16%), Positives = 77/284 (27%), Gaps = 62/284 (21%)
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA--SGTPDVINLG 210
D + S G T RT G+H DE + + +N
Sbjct: 216 LKGDPIVLSNGAHLYFLGTNARTA--------QGYHGN----FYFDEFFWTFKFEELNKV 263
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDDWKRFQIDTRTVEGIDPSF 265
G + + S P +S + Y + FNK ++ +ID +
Sbjct: 264 ASGMALHKRWRKT--YFSTPSAMSHEAYPFWTGDAFNKRRRKEEQVRIDVSHKWLAEGRL 321
Query: 266 HEGIIAR-----------------------YGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
E I R Y D + F S PL+ +
Sbjct: 322 CEDRIWRQIVTIEDAEKGGCDLFDIDELRNYEYSPDQFDNLLMCNFIDDTA-SVFPLSEL 380
Query: 303 EEALNR-----------EPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHL 345
+ + P P+ +G D + G VV+ I
Sbjct: 381 QRCMVDSWEAWNDYKPFTARPFGNRPVWVGYDPSRSGDSAGCVVMAPPLTFPGKFRIIEK 440
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ D +I + +KY + I IDA G + +
Sbjct: 441 HQYRGMDFAAQAEQIRQITQKYNVEYIGIDATGMGLGVYEIVRQ 484
>gi|139473519|ref|YP_001128235.1| phage terminase [Streptococcus pyogenes str. Manfredo]
gi|134271766|emb|CAM29999.1| putative phage terminase [Streptococcus pyogenes str. Manfredo]
Length = 471
Score = 54.0 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 53/347 (15%), Positives = 109/347 (31%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + + A + + + GKT + + LW + G+ ++
Sbjct: 43 PWQENMLIPIMAVDEDGLWVHQKYGYAIPRRN----GKTEVVYIVELWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + + + + + A + S G + +
Sbjct: 97 TAHRISTSHA-SFEKVKKYLEMS---GYVDGEDFISNKAKGQERIEFKSSGAVIQFRT-- 150
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT + + F +I DEA + +T+ + N IM P
Sbjct: 151 -RTSNGGLGEGFD--------LLIIDEAQEYTSEQESALKYTVTDSD-NPMTIMCGTPPT 200
Query: 233 --LSGKFYEIFNKP-------LDDWKRFQIDTRTVEGIDPSF------------HEGIIA 271
+G +E + K W + +D S+ I A
Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVDEMQPIHDVKSWYIANPSMGFHLNERKIEA 260
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D ++ G +P + S I + L E P+ + L +G ++G +
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEWAK--LKVEQVPELKSKLFVGIKFGQDGNN 318
Query: 331 NT-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + R + +R I ++ ++ID
Sbjct: 319 VSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDG 365
>gi|82776052|ref|YP_402399.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
gi|81240200|gb|ABB60910.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
Length = 272
Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 5/143 (3%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-Q 252
+ +EA + + + + + ++ NP ++ + F + +
Sbjct: 131 VLWLEEAHALTEYQWKILEPTIRKEGSECWF--IFNPGLVTDFVWRNFVVDPPEGTLIRK 188
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REP 310
I+ + + + I A D D + G D + I L+ IE A++ +
Sbjct: 189 INYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTL 248
Query: 311 CPDPYAPLIMGCDIAEEGGDNTV 333
+P +G D+A+ G D
Sbjct: 249 NFEPSGRKRIGFDVADSGTDKCA 271
>gi|238920149|ref|YP_002933664.1| hypothetical protein NT01EI_2255 [Edwardsiella ictaluri 93-146]
gi|238869718|gb|ACR69429.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 601
Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 53/161 (32%), Gaps = 18/161 (11%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----IP 298
P W+ ++ +G + + E + RYG + F F +
Sbjct: 334 PDKQWRYVVTMEDAIADGFNRADIEELRERYGE--NAFNRLYMCVFVDDKDSVFDFAKLV 391
Query: 299 LNIIEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFD 347
++ + ++ PD AP + G D A G + T VV+ +
Sbjct: 392 RCGVDPHIWQDFHPDEAAPLGNREVWGGFDPARSGDNATFVVIAVPLLAVERFRVLEKHH 451
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
W + ++I + +Y I ID G + ++
Sbjct: 452 WRGLSFQWMADQIRTIKSRYNMTHIGIDVTGIGYGVYELVQ 492
>gi|168699883|ref|ZP_02732160.1| hypothetical protein GobsU_10183 [Gemmata obscuriglobus UQM 2246]
Length = 205
Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
+ + VG ++ DE S D + + L + + S P G F+
Sbjct: 63 DSQEGVVGFSAPR--LVVIDEGSRVSDELYKSVRPMLAV--SKGQLLTLSTPFGNQGWFF 118
Query: 239 EIF----------NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
+I+ +K + W+R + + I P F E A G + E +F
Sbjct: 119 DIWDDSAEGLKRRSKLHEPWQRTAVPASQIPRITPEFLEDERAELGER--WFQQEYFLRF 176
Query: 289 PQQDIDSFIPLNIIEEALN 307
ID+ +I A +
Sbjct: 177 LD-SIDAVFSQAVIHGARS 194
>gi|56414686|ref|YP_151761.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197363613|ref|YP_002143250.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|56128943|gb|AAV78449.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095090|emb|CAR60636.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 588
Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 23/139 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
+ + Y D + + +F D+ S PL+ ++ + P
Sbjct: 348 LDQLRMEY--SPDEYQNLLMCEFID-DLASVFPLSELQACMVDSWEVWTDFQALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDNT---VVVL--RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ V+ G L W D R + I L +
Sbjct: 405 WREVWIGYDSAKGTQNGDSAGCVVIAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 464
Query: 366 KYRPDAIIIDANNTGARTC 384
+Y I ID+ G
Sbjct: 465 QYNVTYIGIDSTGVGHGVY 483
>gi|254286518|ref|ZP_04961475.1| terminase [Vibrio cholerae AM-19226]
gi|150423467|gb|EDN15411.1| terminase [Vibrio cholerae AM-19226]
Length = 605
Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 48/181 (26%), Gaps = 23/181 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ I+ G D + + Y F S N I
Sbjct: 345 PDKQWRYVVTIEDAAKGGCDLFDIDELREEYSETD--FNNLFMCVFVDGAS-SIFEFNKI 401
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV-------VVLRRGPVIEHL 345
E + Y P + +G D + DN V +V +
Sbjct: 402 ERCMVDSEIWQDYKPNAARPFGSREVWLGYDPSRT-RDNAVLMVVAPPIVAVEKFRVLEK 460
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQKRAV 404
W + ++IS + E++ + ID GA D L +
Sbjct: 461 HTWRGLSFQHQASEISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENK 520
Query: 405 D 405
+
Sbjct: 521 N 521
>gi|22536761|ref|NP_687612.1| hypothetical protein SAG0585 [Streptococcus agalactiae 2603V/R]
gi|22533605|gb|AAM99484.1|AE014218_1 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
Length = 471
Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 57/346 (16%), Positives = 114/346 (32%), Gaps = 47/346 (13%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ + + +N N + + AI R GKT + L LW + G+ ++
Sbjct: 44 WQENML--IPMMAINEDNLWVHQKYGYAIP--RRNGKTEVVYILELWAL--HKGLKILHT 97
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A+ + + + +V K+L + + + + + A + S G + +
Sbjct: 98 AHRISTSHS-SFEKVKKYLEMS---GYVDGEDFISNKAKGQERIEFKSSGSVIQFRT--- 150
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR- 232
RT + + F +I DEA + +T+ + N IM P
Sbjct: 151 RTSNGGLGEGFD--------LLIIDEAQEYTAEQESALKYTVTDSD-NPMTIMCGTPPTM 201
Query: 233 -LSGKFYEIFNKP-------LDDWKRFQIDTRTVEGIDPSF------------HEGIIAR 272
+G +E + K W + +D S+ I A
Sbjct: 202 VSTGTVFESYRKECLKGDRRYSGWAEWSVDEMQPIHDVKSWYVANPSMGYHLNERKIEAE 261
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G +P + S I + L E P+ + L +G ++G +
Sbjct: 262 LGEDEIDHNIQRLGYWPSFNQKSVISEKEWAK--LKVEQVPELKSKLFVGIKFGQDGNNV 319
Query: 332 T-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + R + +R I ++ +++D
Sbjct: 320 SLSIAARASENKVFVEAIDCLSVRNGTQWIINFLKSADIAKVVVDG 365
>gi|261248365|emb|CBG26202.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
Length = 589
Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 31/201 (15%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL----NREPCPDPYA-------PLIM 320
R + + +F S P ++ + P+A P+ +
Sbjct: 355 RRENSDEDFKNLFMCEFVDDKA-SVFPFEELQRCMVDVMETWEDFAPFADHPFGSRPVWI 413
Query: 321 GCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D + G VVL G L W D I L EKY + I I
Sbjct: 414 GYDPSHTGDSAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNVEYIGI 473
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
DA G + A + + +T + +K D + L +G
Sbjct: 474 DATGLGLGVFQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAG 524
Query: 435 ---LIQNLKSLKSFIVPNTGE 452
+ Q+ S++ + ++G
Sbjct: 525 ATDVTQSFMSIRK-TMTSSGR 544
>gi|41057355|ref|NP_958058.1| gp3 [Enterobacteria phage PsP3]
gi|37548561|gb|AAN08365.1| gp3 [Enterobacteria phage PsP3]
Length = 589
Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 31/201 (15%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL----NREPCPDPYA-------PLIM 320
R + + +F S P ++ + P+A P+ +
Sbjct: 355 RRENSDEDFKNLFMCEFVDDKA-SVFPFEELQRCMVDVMETWEDFAPFADHPFGSRPVWI 413
Query: 321 GCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D + G VVL G L W D I L EKY + I I
Sbjct: 414 GYDPSHTGDSAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNVEYIGI 473
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
DA G + A + + +T + +K D + L +G
Sbjct: 474 DATGLGLGVFQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAG 524
Query: 435 ---LIQNLKSLKSFIVPNTGE 452
+ Q+ S++ + ++G
Sbjct: 525 ATDVTQSFMSIRK-TMTSSGR 544
>gi|167991605|ref|ZP_02572704.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205329999|gb|EDZ16763.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
Length = 590
Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 31/201 (15%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL----NREPCPDPYA-------PLIM 320
R + + +F S P ++ + P+A P+ +
Sbjct: 355 RRENSDEDFKNLFMCEFVDDKA-SVFPFEELQRCMVDVMETWEDFTPFADHPFGSRPVWI 413
Query: 321 GCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D + G VVL G L W D I L EKY + I I
Sbjct: 414 GYDPSHTGDSAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNVEYIGI 473
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
DA G + A + + +T + +K D + L +G
Sbjct: 474 DATGLGLGVFQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAG 524
Query: 435 ---LIQNLKSLKSFIVPNTGE 452
+ Q+ S++ + ++G
Sbjct: 525 ATDVTQSFMSIRK-TMTSSGR 544
>gi|153816772|ref|ZP_01969439.1| terminase [Vibrio cholerae NCTC 8457]
gi|126512575|gb|EAZ75169.1| terminase [Vibrio cholerae NCTC 8457]
Length = 605
Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 48/181 (26%), Gaps = 23/181 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ I+ G D E + Y F S N I
Sbjct: 345 PDRQWRYVVTIEDAAKCGCDLFDIEELREEYSETD--FNNLFMCVFVDGAS-SIFEFNKI 401
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV-------VVLRRGPVIEHL 345
E + Y P + +G D + DN V +V +
Sbjct: 402 ERCMVDSEIWQDYKPNAARPFGSREVWLGYDPSRT-RDNAVLMVVAPPIVAVEKFRVLEK 460
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQKRAV 404
W + ++IS + E++ + ID GA D L +
Sbjct: 461 HTWRGLSFQHQASEISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENK 520
Query: 405 D 405
+
Sbjct: 521 N 521
>gi|168262802|ref|ZP_02684775.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|205348497|gb|EDZ35128.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
Length = 591
Score = 54.0 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 20/168 (11%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + + + RY ++ + F DS + +
Sbjct: 328 PDGQWRYVITMEDAIAGGFNLANIDKLRNRY--NTATFNMLYMCVFVDSK-DSVFSFSDL 384
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLF 346
E + P + G D A G + V++ + +
Sbjct: 385 EACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVIVAPPMFAVEKFRVLKVI 444
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
W + R +I L +KY + +D G D ++ V
Sbjct: 445 YWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGIFDNIQHFAMRV 492
>gi|218781804|ref|YP_002433122.1| hypothetical protein Dalk_3968 [Desulfatibacillum alkenivorans
AK-01]
gi|218763188|gb|ACL05654.1| protein of unknown function DUF264 [Desulfatibacillum alkenivorans
AK-01]
Length = 443
Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 49/334 (14%), Positives = 99/334 (29%), Gaps = 46/334 (13%)
Query: 79 KGAISAGRG-IGKTTLNAWLVLWLMSTR---PGISVICLANSETQLKTTLWAEVSKWLSL 134
+ ++ GKT + A L + + + P +A Q K+ +W + K+
Sbjct: 37 RFSVLVCHRRFGKT-VAAVNELIMKACQNPLPAPRYAYIAPLYKQAKSVVWDYLKKFAG- 94
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ + H D+ + + PD G +
Sbjct: 95 -------AINGTTFHETELRCDLPN----------GARITLLGADNPDRLRGIYLDGA-- 135
Query: 195 IINDEASGTPDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEI--FNKPLDDWKRF 251
+ DE + P+ + I L++R + PR + FY++ F + DW
Sbjct: 136 -VLDEMAQMPERVWGEIIRPALSDRLGWAMF--IGTPRGHNA-FYDLYQFARSDPDWFCA 191
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ + A+ + + E F + ++ +I +A
Sbjct: 192 MYRASETGIVGRDELDA--AKKEMTPEQYEQEFECSFSAAIVGAYYGP-LIAQAEKEGRI 248
Query: 312 PDPYAPLIMGCDIAEEGG--DNTVVVLRR---GPVIEHLF--DWSKTDLRTTNNKISGLV 364
+ A + G D+T V + G I + + + L +
Sbjct: 249 VTLPVERALPVHTAWDLGMSDSTAVWFFQVSPGGEIRVVDYLEDAGQGLDYYVRALRERD 308
Query: 365 EKYR----PDAIIIDANNTGARTCDYLEMLGYHV 394
Y P I + TG + + LG
Sbjct: 309 YLYGTHLAPHDIRVRELGTGKSRLESAKSLGVSF 342
>gi|163792602|ref|ZP_02186579.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
gi|159182307|gb|EDP66816.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
Length = 422
Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 74/421 (17%), Positives = 124/421 (29%), Gaps = 67/421 (15%)
Query: 82 ISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
I AGRG GKT A W+ S R + +A + + +
Sbjct: 45 ILAGRGFGKTRTGAEWVRGLAESGR-ARRIALVAETAADARDVM---------------I 88
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE- 199
L APW S + + ++S + PD G A DE
Sbjct: 89 EGESGLLACCAPWGRPKYEPSKRRVTWPNGAIATSFSADDPDQLRGPQFD---AAWADEI 145
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A + ++ L A+ + T+ P + + P + TR
Sbjct: 146 AKWRYEAAWDNLMLGL-RLGADPRCVATTTP-KPRAWLARLMADPG------TVVTRGAT 197
Query: 260 GID-----PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ P F + I+ARY + + R E+ G+F + + +IE A
Sbjct: 198 RENAGNLAPGFLDQILARY-AGTRLGRQEIDGEFLTEIPGALWTRTLIEGARALPGAVPG 256
Query: 315 YAPLIMGCDIA---EEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT----NNKISGLVEKY 367
A +I+ D A D T +V+ + R + + + ++
Sbjct: 257 LARIIVAVDPAVTSGSDSDETGIVVAGVDGEGRFWVLEDLSGRMSPDLWARRSADAYRRH 316
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA 427
DA++ + N G L + + RAV + R E + +
Sbjct: 317 HADAVVCEVNQGGDLVVATLRTVDGSL-----PVRAVRATRGKRLRAEPVAALYEQGRVR 371
Query: 428 SLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM-----YTFAENPPR 482
L + G S D D L+ F P R
Sbjct: 372 HAGPFPELEDQMAG-----FTGAS----------GDASPDRLDALVWALTDLAFDRPPAR 416
Query: 483 S 483
S
Sbjct: 417 S 417
>gi|192289100|ref|YP_001989705.1| hypothetical protein Rpal_0670 [Rhodopseudomonas palustris TIE-1]
gi|192282849|gb|ACE99229.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
TIE-1]
Length = 441
Score = 53.6 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/235 (19%), Positives = 75/235 (31%), Gaps = 19/235 (8%)
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRR 232
T PDT G + + DE + D I + ++ + N T N
Sbjct: 114 TALPANPDTARGFSSN----VFLDEFAFHKDSREIWKALFPVISAGH-NLRVTSTGN--G 166
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTR-TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
KFYE+ D W R +D VE P + + A D D E ++ +
Sbjct: 167 KDNKFYELATGKDDVWSRHFVDIYKAVEDGLPRNIDELKAGI-NDDDAWAQEYELKWLDE 225
Query: 292 DID--SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEHL 345
S+ + E+ +P P +G DI D V+ +
Sbjct: 226 ASAWLSYDLITACEDPRAGDPSGYRNNPCFVGRDIGRRN-DLHVIWVWELIGDVLWERER 284
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLG 399
+ + + ++ +YR ID G + + + G V VL
Sbjct: 285 IEQKRATFAAMDAAFDDVMTRYRVARACIDQTGMGEKVVEDAQAKWGSVVEGVLF 339
>gi|282599774|ref|ZP_05971828.2| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
gi|282567779|gb|EFB73314.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
Length = 594
Score = 53.6 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/263 (15%), Positives = 80/263 (30%), Gaps = 31/263 (11%)
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK-RFQIDTRTVEGIDPS 264
G + R + L + P W+ ++ G + +
Sbjct: 302 PFWTGDE--WRGSDPARKKVKFPQFDELRDGGRDC---PDGQWRYVITLEDAIKGGFNLA 356
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---------IPLNIIEEALNREPCPDPY 315
E + +Y DS + F F + +++ E+ P P
Sbjct: 357 SIERLRNKYNPDS--FNMLFMCVFVDSGASVFKYHQLDKCGVDVHLWEDHNPDAPRPFGD 414
Query: 316 APLIMGCDIAEEGGDNTVVVLR------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ G D A G +T ++ + +F W + + I L ++YR
Sbjct: 415 REVWGGFDPARSGDTSTFAIVAPPMMAPEVFRVLAIFYWQGMNWKHQAKLIEDLTKRYRF 474
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
I ID G + ++ ++ + + + + +L +KM D + L
Sbjct: 475 TYIGIDTTGIGHGVYEMVQD--------FAPRQTHSIHYSQQTKNQLVMKMIDVVSEERL 526
Query: 430 INHSGLIQNLKSLKSFIVPNTGE 452
+ L S S TG+
Sbjct: 527 EWDEEQKEILASFLSIRHTTTGK 549
>gi|331650737|ref|ZP_08351769.1| conserved hypothetical protein [Escherichia coli M605]
gi|331040418|gb|EGI12616.1| conserved hypothetical protein [Escherichia coli M605]
Length = 158
Score = 53.6 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 29/133 (21%)
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
D+A+EG D R G ++E++ +WS +D+ + K+ G E+ + D +
Sbjct: 1 MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDNLEEFRFDEDGL 60
Query: 380 GART------CDYLEMLGYH---------------------VYRVLGQKRAVDLEFCRNR 412
GA + L V GQ ++ +F N
Sbjct: 61 GAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQAARLNKDFFANA 120
Query: 413 RTELHVKMADWLE 425
+ + ++ +
Sbjct: 121 KAQSWWRLRKLFQ 133
>gi|168704532|ref|ZP_02736809.1| hypothetical protein GobsU_33659 [Gemmata obscuriglobus UQM 2246]
Length = 209
Score = 53.6 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
+ + VG ++ DE S D + + L + + S P G F+
Sbjct: 63 DSQEGVVGFSAPR--LVVIDEGSRVSDELYKSVRPMLAV--SKGQLLTLSTPFGNQGWFF 118
Query: 239 EIFN----------KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
+I++ K + W+R + + I P F E A G + E +F
Sbjct: 119 DIWDDSAEGLKRRAKLHEPWQRTAVPASQIPRITPEFLEDERAELGER--WFQQEYFLRF 176
Query: 289 PQQDIDSFIPLNIIEEALN 307
ID+ +I A +
Sbjct: 177 LD-SIDAVFSQAVIHGARS 194
>gi|134295281|ref|YP_001119016.1| hypothetical protein Bcep1808_1170 [Burkholderia vietnamiensis G4]
gi|134138438|gb|ABO54181.1| protein of unknown function DUF264 [Burkholderia vietnamiensis G4]
Length = 458
Score = 53.2 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/247 (14%), Positives = 78/247 (31%), Gaps = 31/247 (12%)
Query: 246 DDWKRFQID-TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
D+ FQI+ + + + + + G+ + + + G+F + IE+
Sbjct: 201 GDYAHFQINPGDNAQNLSADYLDTLK---GMSPRLQKRFLRGEFSDATPNQLFAEETIEK 257
Query: 305 ALNREPCPDPYAP-LIMGCDIAEEGG-DNT--------VVVLRRGPVIEHLFDWSKTDLR 354
+ P P +++ D + G DN VV L L D +
Sbjct: 258 WRHGTDQPLPDFVRVVVAVDPSGSGDVDNADNDAIGIIVVGLGTDGRAYVLDDCTVKAGP 317
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRT 414
T + +++ N G ++ R + V + R
Sbjct: 318 ATWGSVVASAYDRHAGDVVVGETNYGGAMVQHV----VQTARARTPFKQVTASRGKAVRA 373
Query: 415 ELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
E + + + H G+ + L+ + G + G +S + +D L++
Sbjct: 374 EPFSSLYEQ----GKVRHVGIFRELED-ELTAFSTVGYI--------GERSPNRADALIW 420
Query: 475 TFAENPP 481
E P
Sbjct: 421 ALTEIFP 427
>gi|161613293|ref|YP_001587258.1| hypothetical protein SPAB_01003 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161362657|gb|ABX66425.1| hypothetical protein SPAB_01003 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 443
Score = 53.2 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 59/360 (16%), Positives = 105/360 (29%), Gaps = 65/360 (18%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMST---RPGISV-------ICLANSETQLKTTLWAEVSK 130
A+ GR GKT + + + + RPG+ + I A E +
Sbjct: 27 AVRCGRRWGKTFMLSSAAVTYATAPFKRPGMDIELGGRVGIFTA------------EYRQ 74
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
+ + + L + + + + G
Sbjct: 75 YQEIYDKLEEILLP---LKKSFSRQEKRLLLKNGGKIDFWVT-------NDNKLAGRGRE 124
Query: 191 YGMAIINDEASGTPDV-----IN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
Y + +I DEA+ T I I L + T + FY I +
Sbjct: 125 YEIILI-DEAAFTKSPEMLREIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAICHDK 183
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
+ T + + P E A D V R E +F S + E
Sbjct: 184 NLGFIEHHAPTSSNPFVPPEELEKEEAN--NDPRVFRQEFLAEFVDWSAASLFDIRKWFE 241
Query: 305 ALNREPC---PDPYAPLIMGCDIAEEGG---DNTVVVL-----RRGPVIEHLFDWSKTDL 353
N++ P+ + D A +GG D T VV R G + DW +
Sbjct: 242 GENQDQPVDYPEMCQAVFAVMDTAVKGGSEHDGTAVVYYAVDTRPGIQRLTILDWDVVQI 301
Query: 354 R---------TTNNKISGLVEKYRPD----AIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
+ ++++ L + + I+ + G+ E LG+ V ++
Sbjct: 302 DGALLETWMPSVFDRLNELSGQCVAINGSLGVFIEDASMGSILLQKGESLGWPVNKIESA 361
>gi|238762068|ref|ZP_04623041.1| terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
gi|238699796|gb|EEP92540.1| terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
Length = 595
Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 20/163 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + +Y D+ + F DS +++
Sbjct: 333 PDGQWRYVITLEDAIDGGFNLANIERLRNKYNRDT--FNMLYMCVFVDSG-DSVFKFHML 389
Query: 303 EEALNREPCPDPYA----------PLIMGCDIAEEGGDNTVVVLR----RGPVIEHLFD- 347
E+ + + G D A G +T V++ G L
Sbjct: 390 EKCGVDIEMWQDHDFSAPRPFGNREVWGGFDPARSGDTSTFVIIAPPQFEGERFRVLATF 449
Query: 348 -WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
W + N+I L ++Y I +D G + ++
Sbjct: 450 YWQGLNFNYQANQIKELFQRYNMTYIGVDITGIGNGVFELVQN 492
>gi|168822412|ref|ZP_02834412.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205341123|gb|EDZ27887.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
Length = 589
Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/201 (17%), Positives = 62/201 (30%), Gaps = 31/201 (15%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL----NREPCPDPYA-------PLIM 320
R + + +F S P ++ + P+A P+ +
Sbjct: 355 RRENSDEDFKNLFMCEFVDDKA-SVFPFEELQRCMVDVMETWEDFAPFADHPFGSRPVWI 413
Query: 321 GCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D + G VVL G L W D I L EKY + I I
Sbjct: 414 GYDPSHTGDSAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRKLTEKYNVEYIGI 473
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
DA G + A + + +T + +K D + L +G
Sbjct: 474 DATGLGLGVFQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAG 524
Query: 435 ---LIQNLKSLKSFIVPNTGE 452
+ Q+ S++ + ++G
Sbjct: 525 ATDVTQSFMSIRK-TMTSSGR 544
>gi|300310242|ref|YP_003774334.1| DNA-dependent ATPase terminase subunit [Herbaspirillum seropedicae
SmR1]
gi|300073027|gb|ADJ62426.1| DNA-dependent ATPase terminase subunit [Bacteriophage phi CTX]
related protein [Herbaspirillum seropedicae SmR1]
Length = 593
Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 270 IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-----------EPCPDPYAPL 318
+ + D + F S PL ++ + P + P+
Sbjct: 358 LRDFEYSPDQFDNLLMCNFIDDSA-SVFPLADLQRGMVDSWVDWDDYKPFTARPFGHRPV 416
Query: 319 IMGCDIAEEGGDN--TVVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAI 372
+G D + G +V+ L G L W D I + +Y I
Sbjct: 417 WIGYDPSLTGDSAGCSVIAPPLIPGGNFRILERHQWRGKDFAEQAALIKEMCGRYNVQYI 476
Query: 373 IIDANNTGARTC 384
ID G
Sbjct: 477 GIDTTGMGVGVY 488
>gi|51596097|ref|YP_070288.1| phage terminase subunit GpP [Yersinia pseudotuberculosis IP 32953]
gi|51589379|emb|CAH21001.1| terminase subunit [Enterobacteria phage 186] gb|AAC3414 [Yersinia
pseudotuberculosis IP 32953]
Length = 590
Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 22/137 (16%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIM 320
YG + + +F S P ++ + + P+ +
Sbjct: 355 EYGPSE--YQNLLMCEFVDDQA-SVFPFAELQACMVDSLEEWEDYNPYSLRPFGHRPVWI 411
Query: 321 GCDIAE-EGGDNT---VVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAI 372
G D +E GGD+ V+ + G L W D I L +KY + I
Sbjct: 412 GYDPSEANGGDSAGCAVIAPPMVPGGKFRVLERHQWKGMDFEAQAKHIEELTQKYCVEYI 471
Query: 373 IIDANNTGARTCDYLEM 389
IDA G +
Sbjct: 472 GIDATTVGQGVFQLVRQ 488
>gi|15675368|ref|NP_269542.1| hypothetical protein SPy_1460 [Streptococcus pyogenes M1 GAS]
gi|13622552|gb|AAK34263.1| conserved hypothetical protein - phage associated [Streptococcus
pyogenes M1 GAS]
Length = 471
Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 53/347 (15%), Positives = 112/347 (32%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ + + A N + + GKT + + LW + G+ ++
Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAIPRRN----GKTEVVYIVQLWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + + + + + A + + G + +
Sbjct: 97 TAHRISTSHA-SFEKVKKYLEMS---GYVDGEDFISNKAKGQERIEFKASGAVIQFRT-- 150
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT + + F +I DEA + +T+ + N IM P
Sbjct: 151 -RTSNGGLGEGFD--------LLIIDEAQEYTSEQESALKYTVTDSD-NPMTIMCGTPPT 200
Query: 233 --LSGKFYEIFNKP----------LDDWKRFQ------IDTRTVEGIDPSFH---EGIIA 271
+G +E + K +W + + + + FH I A
Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D ++ G +P + S I + L E P+ + L +G ++G +
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEWAK--LKVEQVPELKSKLFVGIKFGQDGNN 318
Query: 331 NT-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + R + +R I ++ ++ID
Sbjct: 319 VSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDG 365
>gi|261885730|ref|ZP_06009769.1| hypothetical protein CfetvA_11664 [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 560
Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/307 (14%), Positives = 90/307 (29%), Gaps = 41/307 (13%)
Query: 195 IINDEASGTPDV--INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
I DE + P+ I + + + S P F+E+++ + +
Sbjct: 251 IWMDEFAWYPNPKKIWHAFVPSI--GAIKGRLTILSTPFEERSLFHELYSDESKYYMFKR 308
Query: 253 IDTRTVEGIDPSFHEGIIARYGL-DSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL---NR 308
I+ + L D+D QF + S + + +I+ +
Sbjct: 309 FCVSIYSAIEDGLDFDLETMRNLFDADTWASAYECQFVDDES-SLLSIALIKSCVYDKAS 367
Query: 309 EPCPDPYAPLIMGCDIAEEGGDNT---VVVLRRGPVIEHLFDWSKTDLRTTNN------- 358
P + G DI +T VV+ S+
Sbjct: 368 YYTPKSNQVIYAGYDIGRVSDRSTLAGVVLEDVTNRARGQRSLSQGGRYIVAMMDVLAKA 427
Query: 359 -------KISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQKRAVDLEFCR 410
++ ++ Y + ID G + + + V V +
Sbjct: 428 KFDEQKEHLTSFLKTYPLSVLKIDKTGIGMNLAENIHDKFRSRVSGVWFSNTRKE----- 482
Query: 411 NRRTELHVKMADWLE--FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
E+ + + E S+ N LI ++ ++K I + + ++KR + + D
Sbjct: 483 ----EMALNLKKAFEDKLISIPNDPLLIADIHAIKRTIGAKSFKY--DAKRNEYGHA-DR 535
Query: 469 SDGLMYT 475
L
Sbjct: 536 FWALALA 542
>gi|304360860|ref|YP_003856980.1| gp8 [Mycobacterium phage CrimD]
gi|302858609|gb|ADL71354.1| gp8 [Mycobacterium phage CrimD]
Length = 473
Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 65/385 (16%), Positives = 118/385 (30%), Gaps = 49/385 (12%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + ++V A S ++F +I R GKT +V L PG +VI
Sbjct: 43 DQWQDDLGKLVCAK--RSDGLYAADMFAMSIP--RQTGKTYFLGAIVFALCKMTPGTTVI 98
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ +T AE K + L + L++H G ++ ++
Sbjct: 99 WTAH-----RTRTAAETFKSMQALAKREQIAPHILNVH----------TGNGKEAVLFTN 143
Query: 172 MCRTYSEERPDTF-VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
R R F G +I DEA + ++ T + N + P
Sbjct: 144 GSRILFGAREKGFGRGF--AKVDVLIFDEAQILSENAMDDMVPA-TNASPNGLILFAGTP 200
Query: 231 RRLS--GKFY-----EIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGI------------ 269
+ + G+ + + N DD + D + ++ +
Sbjct: 201 PKPTDPGEVFTNLRLDAINGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAI 260
Query: 270 -IARYGLDSDVTRVEVCGQFPQQDID-SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
R L D R E G + + + I ++ + + P +G D++
Sbjct: 261 RRMRKALSWDSFRREAMGIWDKISVHAQVIKPSLWRDLADPLGPEPGAKPASLGVDMSHG 320
Query: 328 GGDNTVVVLRRGPVIEHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
G + + H+ W+ TD I R ++ID +
Sbjct: 321 GAISIGGCWLIDDELRHVEQVWAGTDTAAAVEFIVERAG--RRIPVVIDDASPAKSLVPE 378
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRN 411
L+ V A +N
Sbjct: 379 LKRRKVKVRITYAGDMAKACGLFKN 403
>gi|50914563|ref|YP_060535.1| Phage terminase [Streptococcus pyogenes MGAS10394]
gi|50903637|gb|AAT87352.1| Phage terminase [Streptococcus pyogenes MGAS10394]
Length = 476
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 53/347 (15%), Positives = 112/347 (32%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ + + A N + + GKT + + LW + G+ ++
Sbjct: 48 PWQVNMLIPIMAIDENGLWVHQKYGYAIPRRN----GKTEVVYIVELWAL--HKGLKILH 101
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + + + + + A + + G + +
Sbjct: 102 TAHRISTSHA-SFEKVKKYLEMS---GYVDGEDFISNKAKGQERIEFKASGAVIQFRT-- 155
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT + + F +I DEA + +T+ + N IM P
Sbjct: 156 -RTSNGGLGEGFD--------LLIIDEAQEYTSEQESALKYTVTDSD-NPMTIMCGTPPT 205
Query: 233 --LSGKFYEIFNKP----------LDDWKRFQ------IDTRTVEGIDPSFH---EGIIA 271
+G +E + K +W + + + + FH I A
Sbjct: 206 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 265
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D ++ G +P + S I + L E P+ + L +G ++G +
Sbjct: 266 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEWAK--LKVEQVPELKSKLFVGIKFGQDGNN 323
Query: 331 NT-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + R + +R I ++ ++ID
Sbjct: 324 VSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDG 370
>gi|19746414|ref|NP_607550.1| hypothetical protein spyM18_1474 [Streptococcus pyogenes MGAS8232]
gi|19748615|gb|AAL98049.1| conserved hypothetical phage protein [Streptococcus pyogenes
MGAS8232]
Length = 471
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 53/347 (15%), Positives = 112/347 (32%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ + + A N + + GKT + + LW + G+ ++
Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAIPRRN----GKTEVVYIVELWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + + + + + A + + G + +
Sbjct: 97 TAHRISTSHA-SFEKVKKYLEMS---GYVDGEDFISNKAKGQERIEFKASGAVIQFRT-- 150
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT + + F +I DEA + +T+ + N IM P
Sbjct: 151 -RTSNGGLGEGFD--------LLIIDEAQEYTSEQESALKYTVTDSD-NPMTIMCGTPPT 200
Query: 233 --LSGKFYEIFNKP----------LDDWKRFQ------IDTRTVEGIDPSFH---EGIIA 271
+G +E + K +W + + + + FH I A
Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D ++ G +P + S I + L E P+ + L +G ++G +
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEWAK--LKVEQVPELKSKLFVGIKFGQDGNN 318
Query: 331 NT-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + R + +R I ++ ++ID
Sbjct: 319 VSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDG 365
>gi|21910651|ref|NP_664919.1| putative terminase - phage associated [Streptococcus pyogenes
MGAS315]
gi|28876285|ref|NP_795519.1| putative terminase [Streptococcus pyogenes phage 315.3]
gi|28895661|ref|NP_802011.1| hypothetical protein SPs0749 [Streptococcus pyogenes SSI-1]
gi|21904853|gb|AAM79722.1| putative terminase - phage-associated [Streptococcus pyogenes
MGAS315]
gi|28810910|dbj|BAC63844.1| conserved hypothetical protein (phage associated) [Streptococcus
pyogenes SSI-1]
Length = 471
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 53/347 (15%), Positives = 112/347 (32%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ + + A N + + GKT + + LW + G+ ++
Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAIPRRN----GKTEVVYIVELWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + + + + + A + + G + +
Sbjct: 97 TAHRISTSHA-SFEKVKKYLEMS---GYVDGEDFISNKAKGQERIEFKASGAVIQFRT-- 150
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT + + F +I DEA + +T+ + N IM P
Sbjct: 151 -RTSNGGLGEGFD--------LLIIDEAQEYTSEQESALKYTVTDSD-NPMTIMCGTPPT 200
Query: 233 --LSGKFYEIFNKP----------LDDWKRFQ------IDTRTVEGIDPSFH---EGIIA 271
+G +E + K +W + + + + FH I A
Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D ++ G +P + S I + L E P+ + L +G ++G +
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEWAK--LKVEQVPELKSKLFVGIKFGQDGNN 318
Query: 331 NT-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + R + +R I ++ ++ID
Sbjct: 319 VSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDG 365
>gi|71911002|ref|YP_282552.1| phage terminase [Streptococcus pyogenes MGAS5005]
gi|71853784|gb|AAZ51807.1| phage terminase [Streptococcus pyogenes MGAS5005]
Length = 471
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 53/347 (15%), Positives = 112/347 (32%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ + + A N + + GKT + + LW + G+ ++
Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAIPRRN----GKTEVVYIVELWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + + + + + A + + G + +
Sbjct: 97 TAHRISTSHA-SFEKVKKYLEMS---GYVDGEDFISNKAKGQERIEFKASGAVIQFRT-- 150
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT + + F +I DEA + +T+ + N IM P
Sbjct: 151 -RTSNGGLGEGFD--------LLIIDEAQEYTSEQESALKYTVTDSD-NPMTIMCGTPPT 200
Query: 233 --LSGKFYEIFNKP----------LDDWKRFQ------IDTRTVEGIDPSFH---EGIIA 271
+G +E + K +W + + + + FH I A
Sbjct: 201 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D ++ G +P + S I + L E P+ + L +G ++G +
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEWAK--LKVEQVPELKSKLFVGIKFGQDGNN 318
Query: 331 NT-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + R + +R I ++ ++ID
Sbjct: 319 VSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDG 365
>gi|148727151|ref|YP_001285645.1| putative terminase large subunit [Aeromonas phage phiO18P]
gi|110349286|gb|ABG73174.1| putative terminase large subunit [Aeromonas phage phiO18P]
Length = 604
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 19/139 (13%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP-------- 317
E + Y + V +F D S +E A + Y P
Sbjct: 363 IEELKDEYPEE--VFDRLYMCRFID-DALSVFKFQDMERAGVDPTRWEDYKPGRPDPFGR 419
Query: 318 --LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ MG D + + T+VV+ + W + + +I + +K+R
Sbjct: 420 REVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKKFRV 479
Query: 370 DAIIIDANNTGARTCDYLE 388
+ +D + GA D L+
Sbjct: 480 TYLGVDVSGIGAGVYDLLK 498
>gi|261251508|ref|ZP_05944082.1| terminase [Vibrio orientalis CIP 102891]
gi|260938381|gb|EEX94369.1| terminase [Vibrio orientalis CIP 102891]
Length = 594
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 49/180 (27%), Gaps = 21/180 (11%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ +G D E + Y + + F S N +
Sbjct: 332 PDKQWRYVITMEDAVAQGFDLVDIEDLRDEY--SDNEFKNLFMCIFVDGAA-SIFEFNKV 388
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLF 346
+ + P + +G D + + +VV+ +
Sbjct: 389 MRCMVDSKQWQDFDPKAKRPIGAREVWLGYDPSRTRDNACLVVVAPPALPGEKFRVLEKH 448
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQKRAVD 405
W + + +I + + Y + ID GA D L + + +
Sbjct: 449 YWKGLNFQYQAKQIGEVFKCYNVTYLGIDVTGIGAGVYDLLSKQHPREAVAIHYSNDNKN 508
>gi|295111846|emb|CBL28596.1| Mu-like prophage FluMu protein gp28 [Synergistetes bacterium SGP1]
Length = 532
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 68/430 (15%), Positives = 134/430 (31%), Gaps = 62/430 (14%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F+ + + + IG + L VL R ++ A+ + + KW L
Sbjct: 143 FRVCLKSRQ-IGFSFLLGLEVLLGAIERGDNQIVISASQDQ--SDIVRNYAVKWCKDL-- 197
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ D + + Y C P T G+ +
Sbjct: 198 ------------DVDYLEDGGNIIFPGGAIAYFLPC------NPRTVQGYTGD----VYL 235
Query: 198 DEAS----GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP--LDDWKRF 251
DE + G ++ + T + +TS P + F EI P + R
Sbjct: 236 DEFAWHMRG--RLMWQAAVPAATTKGKR--LTVTSTPYTETDMFGEIVTNPDKYPRFSRH 291
Query: 252 QIDTRTVEGIDPSFHEGIIARYGL-DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ + I GL D+ +F ++ + + + L+ +
Sbjct: 292 TVTIYDA--VKDGHQVDIEELRGLFDAITFAQAYECRFFADELC-LLQPDEVRAVLDDDC 348
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI--------EHLFDWSKTDLRTTNNKISG 362
A + G DI D T +VL + H+ ++ + ++G
Sbjct: 349 LRHVSAWVNGGVDIGRT-KDVTAIVLAEQLQVEAEKLVFVRHMETLARMAFDGQRSHMAG 407
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
LVE ++ + +DA G + + ++ L + + F R ++ E+ + +
Sbjct: 408 LVEGWKIRRLAMDATGIGMQLSEDMQRL--------YPGKVERVHFTREKKEEMALSVKK 459
Query: 423 WLEF--ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
E + N L+ L ++K G ++ R + K D L E
Sbjct: 460 LFETQRIRIPNDRDLVMQLHAIKR-KPTEKG-FTYDADRNEQIKHADLFWALALAVKEFG 517
Query: 481 PRSDMDFGRC 490
R + R
Sbjct: 518 GRRRVLTARN 527
>gi|15894418|ref|NP_347767.1| hypothetical protein CA_C1134 [Clostridium acetobutylicum ATCC 824]
gi|15024053|gb|AAK79107.1|AE007629_13 Phage related protein, YonF B.subtilis homolog [Clostridium
acetobutylicum ATCC 824]
gi|325508547|gb|ADZ20183.1| Phage related protein [Clostridium acetobutylicum EA 2018]
Length = 589
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 68/484 (14%), Positives = 151/484 (31%), Gaps = 87/484 (17%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPE--VFKGAISAG-----------RGIGKTTLNAWLVLW 100
W +++++ + ++ +P K + R +GKT + ++
Sbjct: 45 WWRQYLDIFIENYFSTEKSPVRFYDFQKVIVRECGNCSIVRDTEARSMGKTFKMSRVLAG 104
Query: 101 LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC 160
L P ++ ++N+ Q ++ N +Q + +
Sbjct: 105 LAILYPQNKILIVSNTVRQ-AILTVKYINDLGEENANFAREIIQPIKISKDG-------- 155
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFL---- 215
+ K+ S + + G I DE++ VI ++ L
Sbjct: 156 -AKVKFKNGSEIEAMAMNKDGSNIRG---ERRKIIYIDESAWVMSSVIQSVLIPMLRYNR 211
Query: 216 -----------TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
+ + I TS+ S +Y+ F + + D + D +
Sbjct: 212 KVVENNRLKGLAFEDFSSKLIETSSAYLKSCDYYQRFKETIQDIRDGYKDRFCCALSYKT 271
Query: 265 FHE--------GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA-----LNREPC 311
+ + + V +E +F + S+ P ++ E + +
Sbjct: 272 AVRCGIVEEDFVLEQKKKMPLSVWEMEWNSKFVGETEGSYFPYDLTEPCRDFSHVEIQQP 331
Query: 312 PDPYAPLIMGCDIAEEGG---DNTVVVL------RRGPVIEHLF---DWSKTDLRTTNNK 359
+ + ++ D+A DN + + G +++ + L +
Sbjct: 332 KNSMSRYVLSLDVATSEDKKADNACITVIKIVPKNDGTYEKYIVFIRTYHGYSLEMLAEQ 391
Query: 360 ISGLVEKYRPD-AIIIDANNTGARTCDYL-----EMLGYHV-------YRVLGQKRAVDL 406
+ ++ +IIDAN G L + LG V ++A+++
Sbjct: 392 VRITCCRFPNIIKVIIDANAIGEGVVSLLNIPYVDDLGREYPPLIKDTIEVSDSRKAINI 451
Query: 407 ---EFCRNRRTE-LHVKMADWLEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESKR 459
N++ E + V +LE SL I + + ++ K I +TG SK
Sbjct: 452 ISAIKADNKKNENMAVHTLLFLENHSLHIPIPSVKIRRQIEEQKIIIKDDTGTKRKISKE 511
Query: 460 VKGA 463
G
Sbjct: 512 EVGV 515
>gi|109302915|ref|YP_654730.1| hypothetical protein F108p19 [Pasteurella phage F108]
gi|73918076|gb|AAZ93654.1| unknown [Pasteurella phage F108]
Length = 603
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 61/183 (33%), Gaps = 25/183 (13%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----IPLNIIEEALNREPCPDPYAP---- 317
+ + +Y + F + ++ A ++ P+ P
Sbjct: 367 IDALKQKYSKY--AFAQLFMCVWVDDADSIFNIKKLLKCGVDIAKWKDHNPNDARPFGAR 424
Query: 318 -LIMGCDIAEEGGDNTVVV------LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
+ G D A G + V+ L+ + + W+ + +I L EKY
Sbjct: 425 EVWGGYDPAHSGDGASFVIVAPPALLKEKYRVLARYQWNGLSYKYQAAQIKQLFEKYNMT 484
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
I IDA G + ++ ++AV L + +TE+ +K+ D +E +
Sbjct: 485 YIGIDATGVGYGVYEQVKE--------FAGRKAVPLVYNPESKTEMVLKVHDLVEHEQIE 536
Query: 431 NHS 433
Sbjct: 537 WDE 539
>gi|123441220|ref|YP_001005207.1| terminase, ATPase subunit [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122088181|emb|CAL10969.1| terminase, ATPase subunit [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 725
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 45/157 (28%), Gaps = 20/157 (12%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--------- 316
E I S QF F + +E+ L + +
Sbjct: 378 LEEIREENAESS--FNQLYMCQFVDTGDCVF-RFDQLEKCLTNVSTWEDHDVNAMRPFGN 434
Query: 317 -PLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ G D A G + V++ + H+ W + +I + +Y
Sbjct: 435 REVWAGYDPARTGDTASFVLVAPPQVDGEPFRVLHIETWHGFAFKYQVGRIKEYMARYNI 494
Query: 370 DAIIIDANNTGARTCDYLEML-GYHVYRVLGQKRAVD 405
I ID G C+ ++ V + + + +
Sbjct: 495 THIGIDTTGIGGPVCEMVQDFARREVTPIRYSQESKN 531
>gi|330810733|ref|YP_004355195.1| phage terminase protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327378841|gb|AEA70191.1| Putative phage terminase protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 439
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 67/418 (16%), Positives = 122/418 (29%), Gaps = 75/418 (17%)
Query: 78 FKGAISAGRGIGKTTL--------NAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
F+ A+ GR GKT L W +S + A ++ Q + W +
Sbjct: 32 FRDAV-CGRRFGKTFLGKAEMRRAAKLAAAWNVSVEDE--IWYAAPTQKQARRVFWRRLK 88
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ + P W + + + + + R E D G
Sbjct: 89 QAI-----------------PKSWLVTKPNETDMLITLKSGHLLRCVGLENYDDLRG--- 128
Query: 190 TYGMAIINDEASGTPDVIN-LGILGFLT---------ERNANRFWIMTSNPRRLSGKFYE 239
+ I+ DE + I L+ E + P+ Y+
Sbjct: 129 SGLFFILVDEWADCKYAAWEEVIRPMLSTCTYTLPNGEVRKGGHALRIGTPKG-FNHCYD 187
Query: 240 IF------NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
F ++P + + + P E + +D R E F ++
Sbjct: 188 TFQDGKPGHEPDHRSWLYT--SLDGGNVPPEEIEAARRK--MDPRTFRQEYEASF--ENY 241
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
+ EA L +G D VV + R + L ++S ++
Sbjct: 242 QGVVYYTFNREANRTSETIKRGEALHIGMDFNVMKM-AAVVHVIRDDLPLALSEFS--EV 298
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGART---------CDYLEMLGYHVYRVLGQKRAV 404
R T I + ++ +I I + +G T L+ G+ V V AV
Sbjct: 299 RDTPEMIEKIKLRFPDHSIAIYPDASGQNTSSKSASESDLSLLKKAGFTVI-VDSTNPAV 357
Query: 405 DLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKG 462
N + + E L+N + + L+ I + G E + G
Sbjct: 358 KDR--VNAMCAMFAN--TYGEHRYLVNVDQCPKYTQCLERQIYTDKG----EPDKKAG 407
>gi|307591253|ref|YP_003900462.1| hypothetical protein Cyan7822_6211 [Cyanothece sp. PCC 7822]
gi|306986818|gb|ADN18693.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
Length = 474
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/249 (15%), Positives = 81/249 (32%), Gaps = 40/249 (16%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRL 233
+ P+ G + I+ DE++ + I + T + I+ S P
Sbjct: 145 FRNSTPNGARGLESVSD--ILYDESAFVDEIEEIYKSSIPCTTVVGSEARIIILSTPNGQ 202
Query: 234 SGKFYEIFNKPLDD-----------------------------WKRFQIDTRTVEGIDPS 264
SG +++ + D + + +
Sbjct: 203 SGWYWDKLSSNNGDRDILEICEQIRTEKIEPIQYWIDNNQWCKFIVHWLGHPKFSQQKET 262
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI--MGC 322
+ I A++ L D+ E F ++ I+ + + DP + I G
Sbjct: 263 YLRDIKAQFDLPEDIIEQEYNLSFTHSEV-IVFSSEIVRKNAIGQWENDPKSNCIYYFGI 321
Query: 323 DIAEEGGDNTVVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
D + G D TV + R + ++ K +I+ L+++Y P + I+ N+
Sbjct: 322 DTSLLGNDYTVCTILREIDNRYHLVKMYRQRKKTHEYNIYQIAELIKQYNPIIVGIEVNS 381
Query: 379 TGARTCDYL 387
+G + L
Sbjct: 382 SGQVYYEQL 390
>gi|147671611|ref|YP_001215893.1| terminase [Vibrio cholerae O395]
gi|262167851|ref|ZP_06035552.1| terminase [Vibrio cholerae RC27]
gi|146313994|gb|ABQ18534.1| terminase [Vibrio cholerae O395]
gi|227014845|gb|ACP11054.1| putative terminase, ATPase subunit [Vibrio cholerae O395]
gi|262023759|gb|EEY42459.1| terminase [Vibrio cholerae RC27]
Length = 605
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 48/181 (26%), Gaps = 23/181 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ I+ G D E + Y F S N I
Sbjct: 345 PDRQWRYVVTIEDAAKGGCDLFDIEELREEYSETD--FNNLFMCVFVDGAS-SIFEFNKI 401
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV-------VVLRRGPVIEHL 345
E + + P + +G D + DN V +V +
Sbjct: 402 ERCMVDSEIWQDFKPNAARPFGSREVWLGYDPSRT-RDNAVLMVVAPPIVAVEKFRVLEK 460
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQKRAV 404
W + ++IS + E++ + ID GA D L +
Sbjct: 461 HTWRGLSFQHQASEISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENK 520
Query: 405 D 405
+
Sbjct: 521 N 521
>gi|332522503|ref|ZP_08398755.1| putative phage terminase, large subunit [Streptococcus porcinus
str. Jelinkova 176]
gi|332313767|gb|EGJ26752.1| putative phage terminase, large subunit [Streptococcus porcinus
str. Jelinkova 176]
Length = 470
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 51/345 (14%), Positives = 110/345 (31%), Gaps = 45/345 (13%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ + + A + + + GKT + L LW + G+ ++
Sbjct: 43 WQKNMLSPIMAIDEDGLWVHQKYGYAIPRRN----GKTEIVYILELWGL--HKGLKILHT 96
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A+ + + + ++ K+L + + + + + A + S G + +
Sbjct: 97 AHRISTSHS-SFEKLKKYLEMS---GYVDGEDFISNKAKGQERIEFKSSGSVIQWRT--- 149
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR- 232
RT + + F ++ DEA + +T+ + N +M P
Sbjct: 150 RTSNGGLGEGFD--------LLVIDEAQEYTSEQESALKYTVTDSD-NPMTVMCGTPPTM 200
Query: 233 -LSGKFYEIFNKP-------LDDWKRFQIDTRTV-------EGIDPS-----FHEGIIAR 272
+G +E + K W + + T +PS I A
Sbjct: 201 VSTGTVFESYRKEVLKGAKKYSGWAEWSVSEMTKIDDVQSWYIANPSMGFHLNERKIEAE 260
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D ++ G +P + S I + L E P+ L +G ++G + +
Sbjct: 261 LGDDEIDHNIQRLGYWPTFNQKSVISEKEWGK-LKVEQTPELSGKLFVGIKFGQDGNNVS 319
Query: 333 -VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ R + +R I ++ +++D
Sbjct: 320 MSIAARTKENKIFVESIDCLSVRNGTQWIIDFLKSADIAKVVVDG 364
>gi|323940932|gb|EGB37119.1| hypothetical protein ERDG_02336 [Escherichia coli E482]
Length = 443
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 60/361 (16%), Positives = 103/361 (28%), Gaps = 65/361 (18%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST---RPGISV-------ICLANSETQLKTTLWAEVS 129
A+ GR GKT + + + ++ RPG+ + I A E
Sbjct: 26 NAVRCGRRWGKTFMLSSAAVTYATSQFRRPGMDIELGGRVGIFTA------------EYR 73
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
++ + + L + + + + G
Sbjct: 74 QYQEIYDKLEEILLP---LKKSFSRQEKRLLLKNGGKIDFWVT-------NDNKLAGRGR 123
Query: 190 TYGMAIINDEASGTPDV-----IN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
Y + +I DEA+ T I I L + T + FY I +
Sbjct: 124 EYEIILI-DEAAFTKSPEMLKEIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAICHN 182
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
+ T + + P E R D V R E +F S +
Sbjct: 183 KDLGFHEHHAPTSSNPFVPPEELEK--ERQNNDPRVFRQEFLAEFVDWSAASLFDVRKWF 240
Query: 304 EALNREPC---PDPYAPLIMGCDIAEEGG---DNTVVVL-----RRGPVIEHLFDWS--K 350
E N++ P+ + D A +GG D T VV R G + DW +
Sbjct: 241 EGENQDQPVDYPEMCQAVFAVMDTAVKGGTDHDGTAVVYYAVDTRPGIQRLTILDWDVVQ 300
Query: 351 TDLRTTNNKISGLVEKY-----------RPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
D I + + + I+ + G+ E LG+ V ++
Sbjct: 301 IDGALLEEWIPSVFTRLNELSGQCVAVNGSLGVFIEDASMGSILLQKGESLGWPVNKIES 360
Query: 400 Q 400
Sbjct: 361 A 361
>gi|319645791|ref|ZP_08000021.1| YonF protein [Bacillus sp. BT1B_CT2]
gi|317391541|gb|EFV72338.1| YonF protein [Bacillus sp. BT1B_CT2]
Length = 589
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 62/449 (13%), Positives = 127/449 (28%), Gaps = 108/449 (24%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
A RG GKT L + PG ++ + ++ Q + +
Sbjct: 84 ASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVI-----------EKIDDLRK 132
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+S +L ++ + S + S + G + +I DE
Sbjct: 133 ESPNLKREIEDLKTSTNDARVEFHNGSWIKIVASND------GARSKRANLLIVDEFRMV 186
Query: 204 P-DVINLGILGFLTERNANRFW-------IMTSNPR-RLSGKFYEIF------------- 241
++I+ + FLT + ++ + N LS +Y++
Sbjct: 187 DFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSYGRFVTYFNAM 246
Query: 242 ---NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+K +QI R +D + ++ D +E+ + + ++
Sbjct: 247 MKGSKYFVCGLPYQIAIREG-LLDKDQVKDEMSEEDFDPIGWSMEMEALWFGESEKAYFK 305
Query: 299 LNIIEEALN-------------------REPCPDPYAPLIMGCDIAEEGG---DNTVVVL 336
+E+ + P ++ DIA G D +V +
Sbjct: 306 FEDLEKNRKLASPLFPPDYYDLIKDSNFKFENKKPGELRLISNDIAGMAGKDNDASVYTV 365
Query: 337 RR--------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
R I ++ + +I L E Y D I++D + G D L
Sbjct: 366 FRLIPNSNGYDRHIVYMESIVGGHTGSQATRIRQLFEDYACDYIVLDTQSIGLGVYDALC 425
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQ--NLKSLKSFI 446
R + + E S IN + + ++ + I
Sbjct: 426 Q-----------------PLYDKERAKEY-------EPLSCINDEKMAERCTYQNAEKLI 461
Query: 447 VPNTGELAIESK---------RVKGAKST 466
G + S+ + + K
Sbjct: 462 YSIKGNAQLNSEIAVLLKDGFKRRKIKIP 490
>gi|282599667|ref|ZP_05971423.2| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
gi|282568162|gb|EFB73697.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
Length = 574
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 42/257 (16%)
Query: 241 FNKPLDDWKRFQ-IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI-----D 294
W++ I G++ E I D R +F + D
Sbjct: 305 HYSGDSMWRQIVNIHDAIARGLNRVILEEIKDE--NPPDDFRNLYECEFVKTGERAFSYD 362
Query: 295 SFIPLNIIEEALNREPCPDPYAP-------LIMGCDIAEEGGDNTVVVLRR-------GP 340
+ I + + PYAP + +G D G + + L G
Sbjct: 363 ALINCGVDGYNSHIWSDWKPYAPRPLGNRPVWVGADPTGTGDNGDGLGLVIASPPAVSGG 422
Query: 341 VIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDAN-NTGARTCDYLEMLGYHVYRV 397
+ +I + ++Y +I ID TGA + + V
Sbjct: 423 KFRIIETVQLRGMAFEKQAEEIRRITQRYNVQSITIDGTGGTGAAVHELV---------V 473
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG----LIQNLKSLKSFIVPNTGEL 453
A L + + + +KM + +G LI +L ++K +G +
Sbjct: 474 KFFPAANLLNYSAPIKRMMIMKMQMLIRSGRFEYDAGLHKPLITSLMTIKKIQ-TPSGII 532
Query: 454 AIESKRVKGAKSTDYSD 470
ES RV+G D+ D
Sbjct: 533 TYESSRVRGL---DHGD 546
>gi|182415227|ref|YP_001820293.1| hypothetical protein Oter_3416 [Opitutus terrae PB90-1]
gi|177842441|gb|ACB76693.1| protein of unknown function DUF264 [Opitutus terrae PB90-1]
Length = 521
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 53/328 (16%), Positives = 96/328 (29%), Gaps = 66/328 (20%)
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPR-RLS 234
P T G +I DE + D I ++ F S+
Sbjct: 153 AANPRTARGFSGD----LILDEFAFHQDSRAIWEAAEPIISA--NPEFLCRISSTGNGRR 206
Query: 235 GKFYEIFNKPL---------DDWKRFQIDTRTV---EGIDPSFHEGIIARYGLDSDVTRV 282
FY++ + D WKR +I +V E I P + D
Sbjct: 207 NMFYQLIAEGRIPYYRMRRSDAWKRGEIRIYSVVTGEEITPDQARAEAS----DKRAYDQ 262
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL----------------IMGCDIAE 326
G+F + + + +I A RE + +G D+
Sbjct: 263 NYEGEFNDEAS-ALLTQELISAA-EREGIAIEHQEWSEATIERLRTKTIGDLFLGQDVGR 320
Query: 327 EGGDNTV--VVLRRGPVIEHLFDWSKTDLRTTN--NKISGLVEKYRPDAIIIDANNTGAR 382
+ D +V V+ R G + ++R ++ + + + + ID G
Sbjct: 321 K-RDFSVQTVIERIGSGYRVVAMLRMENMRLPAQQRELEKICKLPKFRSAEIDMTGLGLG 379
Query: 383 TCDYLEM--LGYHVYRVLGQKRAVDLEFCR-------------NRRTELHVKMADWLEFA 427
+Y + G +V V R TEL D +
Sbjct: 380 LVEYAQEEPWGGNVRGVNFGSSEPISLKLRADGKKGETAPVTELMATELLGVFED--KRI 437
Query: 428 SLINHSGLIQNLKSLKSFIVPNTGELAI 455
+ L +L+ + + P+ G ++I
Sbjct: 438 EIPMDPELRDDLRKPEKLVSPS-GRVSI 464
>gi|238760573|ref|ZP_04621704.1| Terminase, ATPase subunit [Yersinia aldovae ATCC 35236]
gi|238701192|gb|EEP93778.1| Terminase, ATPase subunit [Yersinia aldovae ATCC 35236]
Length = 590
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 22/137 (16%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIM 320
YG + + +F S P ++ + Y P+ +
Sbjct: 355 EYGPSE--YQNLLMCEFVDDQA-SVFPFKELQACMVDSLEEWEDYNPYSLRPFGYRPVWI 411
Query: 321 GCDIAE-EGGDNT---VVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAI 372
G D +E GGD+ V+ + G L W D I L +KY + I
Sbjct: 412 GYDPSEANGGDSAGCAVIAPPMVPGGKFRVLERHQWKGMDFEAQAKHIEELTQKYCVEYI 471
Query: 373 IIDANNTGARTCDYLEM 389
IDA G +
Sbjct: 472 GIDATTVGQGVFQLVRQ 488
>gi|186896884|ref|YP_001873996.1| hypothetical protein YPTS_3586 [Yersinia pseudotuberculosis PB1/+]
gi|186699910|gb|ACC90539.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
PB1/+]
Length = 595
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 20/163 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + +Y D+ + F DS +++
Sbjct: 333 PDGQWRYVITLENAIDGGFNLADIERLRNKYNRDT--FNMLYMCVFVDSG-DSVFKFHML 389
Query: 303 EEALNREPCPDPYA----------PLIMGCDIAEEGGDNTVVVLR----RGPVIEHLFD- 347
E+ + + G D A G +T V++ G L
Sbjct: 390 EKCGVDIEMWQDHDFSAPRPFGNREVWGGFDPARSGDTSTFVIIAPPQFEGERFRVLATF 449
Query: 348 -WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
W + N+I L ++Y I +D G + ++
Sbjct: 450 YWQGLNFNYQANQIKELFQRYNMTYIGVDITGIGNGVFELVQN 492
>gi|226305996|ref|YP_002765956.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
gi|226185113|dbj|BAH33217.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
Length = 402
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/366 (13%), Positives = 96/366 (26%), Gaps = 71/366 (19%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
H + FK + GR GKTT + PG V A + Q + +
Sbjct: 5 HQSQRKIAESSSRFKV-LRCGRRFGKTTYAVEEMKGACLFEPGP-VAYFATTRDQARDIV 62
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
WAE+ +++ ++ L D + + R
Sbjct: 63 WAEL--LENVIGTTNYVSHNEQRLEVTLRRPDGSLNRIRLFGWENIETARG--------- 111
Query: 185 VGHHNTYGMAIINDEAS---GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY-EI 240
++ DE I L + + P+ + E
Sbjct: 112 -----KKYSLVVLDELDSMRAFEKQWREIIRATLADYRGRALF--MGTPKGYKSLYRLEK 164
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
+K +++ F + + + + + E+ ++ + +
Sbjct: 165 LSKTNANYEVFHFTSFDNPFLSVEELDEMRGEMTVTQ--YAQEMLAEYHKME-------G 215
Query: 301 IIEEALNRE----PCPDPYAPLIMGCDIAEE----------GGDNTVVVLRRGPVIEHLF 346
+I E NR+ P + D G DN+ ++ +
Sbjct: 216 LIYEEFNRDQHIKALPFTPERWALSIDFGYNHPFAAGIFAIGSDNS-------LHLDRMV 268
Query: 347 DWSKTDLRTTNNKISGLVEKYR--------PDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
K N + L+ + D + ID LG + V+
Sbjct: 269 YKRKLSDEQRMNAVRDLIGDTKLDFQIGDSEDPLAIDT---------LNRQLGLKIQPVV 319
Query: 399 GQKRAV 404
+V
Sbjct: 320 KGAGSV 325
>gi|94994695|ref|YP_602793.1| phage terminase [Streptococcus pyogenes MGAS10750]
gi|94548203|gb|ABF38249.1| phage terminase [Streptococcus pyogenes MGAS10750]
Length = 476
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 52/347 (14%), Positives = 111/347 (31%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + + A + + + GKT + + LW + G+ ++
Sbjct: 48 PWQENMLIPIMAVDEDGLWVHQKYGYAIPRRN----GKTEVVYIVELWAL--HKGLKILH 101
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + + + + + A + + G + +
Sbjct: 102 TAHRISTSHA-SFEKVKKYLEMS---GYVDGEDFISNKAKGQERIEFKASGAVIQFRT-- 155
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT + + F +I DEA + +T+ + N IM P
Sbjct: 156 -RTSNGGLGEGFD--------LLIIDEAQEYTSEQESALKYTVTDSD-NPMTIMCGTPPT 205
Query: 233 --LSGKFYEIFNKP----------LDDWKRFQ------IDTRTVEGIDPSFH---EGIIA 271
+G +E + K +W + + + + FH I A
Sbjct: 206 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 265
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D ++ G +P + S I + L E P+ + L +G ++G +
Sbjct: 266 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEWAK--LKVEQVPELKSKLFVGIKFGQDGNN 323
Query: 331 NT-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + R + +R I ++ ++ID
Sbjct: 324 VSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDG 370
>gi|320105341|ref|YP_004180931.1| hypothetical protein AciPR4_0096 [Terriglobus saanensis SP1PR4]
gi|319923862|gb|ADV80937.1| hypothetical protein AciPR4_0096 [Terriglobus saanensis SP1PR4]
Length = 484
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 57/342 (16%), Positives = 102/342 (29%), Gaps = 61/342 (17%)
Query: 106 PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
PG + +A++ + ++ V + LP+ S ++V +
Sbjct: 84 PGTMTVLVAHTREATEQ-MFRIVQRMWENLPDDLREGPAKRS------RANVGQMAFPAL 136
Query: 166 SKHYSTMCRT-YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
+ + + R + H + D AS G+ L
Sbjct: 137 DSEFRVVSAGEQNAGRSMSIQNLHCSELSRWPGDAASTLA-----GLKAALAPGGE---M 188
Query: 225 IMTSNPRRLSGKFYEIF---------NKPLDDWKRFQIDTRTVEGIDPSFHEG-IIARYG 274
++ S P G FY+ + L W VE D + E +++R G
Sbjct: 189 VLESTPNGAYGCFYQEWMEAEAQRMARHFLPWWMEPTYLGARVEASDWTEEERALVSREG 248
Query: 275 LDSD----------VTRVEVCGQFPQQDI-------DSFIPLNIIEEALN---------- 307
L + R +F + + + F L+ IE L
Sbjct: 249 LRPEQIGYRRELQRTYRGMARQEFAEDAVSCFRASGECFFELDAIEARLAELTPPLASRR 308
Query: 308 -----REPCPDPYAPLIMGCDIAEEGGD---NTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
P ++ D A G + V+ ++ + + R
Sbjct: 309 SGSLLLWMPPVKGRRYLIASDPAGGGSEGDFAAAQVVDIDLGLQCAELRQRLNPRELAEV 368
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
+ L +Y I+++ NN GA YLE G VY GQ
Sbjct: 369 LIDLAREYNGALIVVERNNHGAGVLAYLEKRGVAVYEEGGQA 410
>gi|238765012|ref|ZP_04625949.1| Terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
gi|238696781|gb|EEP89561.1| Terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
Length = 587
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/207 (16%), Positives = 61/207 (29%), Gaps = 32/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP----------- 314
+ + Y + + +F S P ++ +
Sbjct: 349 LDQLALEY--SPAEYQNLLMCEFVDDK-TSVFPFEELQGCMVDSLEEWDDFNPYAYRPFG 405
Query: 315 YAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
Y + +G D + G VVL G L W D T I L EKY
Sbjct: 406 YRAVWLGYDPSHTGDSAGCVVLAPPLVPGGKFRILERHQWKGMDFATQAESIKTLTEKYC 465
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + ++ + +T L +K D +
Sbjct: 466 VEYIGIDATGIGQGVYQLVRE---------FFPAVQEIRYSPEIKTALVLKAKDLITSGR 516
Query: 429 LINHSG---LIQNLKSLKSFIVPNTGE 452
L SG + Q+ +++ + + G
Sbjct: 517 LEYDSGHTDITQSFMAIRKTMTASGGR 543
>gi|238788385|ref|ZP_04632179.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
gi|238723631|gb|EEQ15277.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
Length = 587
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/207 (16%), Positives = 61/207 (29%), Gaps = 32/207 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP----------- 314
+ + Y + + +F S P ++ +
Sbjct: 349 LDQLALEY--SPAEYQNLLMCEFVDDK-TSVFPFEELQGCMVDSLEEWDDFNPYAYRPFG 405
Query: 315 YAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
Y + +G D + G VVL G L W D T I L EKY
Sbjct: 406 YRAVWLGYDPSHTGDSAGCVVLAPPLVLGGKFRILERHQWKGMDFATQAESIKTLTEKYC 465
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + ++ + +T L +K D +
Sbjct: 466 VEYIGIDATGIGQGVYQLVRE---------FFPAVREIRYSPEIKTALVLKAKDLITSGR 516
Query: 429 LINHSG---LIQNLKSLKSFIVPNTGE 452
L SG + Q+ +++ + + G
Sbjct: 517 LEYDSGHTDITQSFMAIRKTMTASGGR 543
>gi|225621691|ref|YP_002724049.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547649|gb|ACN93626.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 61/332 (18%), Positives = 108/332 (32%), Gaps = 51/332 (15%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM----STRP-GIS 109
Q E + +++H + V +F G I++ GKT L ++L++ + S +
Sbjct: 49 QKEVLFDIESHDYSKV------IFSGGIAS----GKTFLASYLLVKKLIENKSFYEQDTN 98
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ NS L T ++ K SL + + + L I
Sbjct: 99 NFIIGNSIGLLMTNTVKQIEKICSL------LGIDYEKKKSGQSFCKIAGLKLNI----- 147
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
Y + D F I +EA+ L ++ L R I +N
Sbjct: 148 ------YGGKNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRL--RKGKEIIIFDTN 199
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQF 288
P + F + + D +K + T F + Y R V G++
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYTFTTYDNPLNSADFIQTQEKLY-RRFPAYRARVLYGEW 258
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVLRRGPVIEHLFD 347
+ F E N++ IM D A GGDNT + + E +
Sbjct: 259 ILNESTLF-----NEMIFNQDYEFKSP---IMYIDPAFSVGGDNTAICVLERTF-EKFYA 309
Query: 348 WSKTDLRTTN-----NKISGLVEKYRPDAIII 374
+ D + + I L+E + + + I
Sbjct: 310 YIYQDQKPVSDSLVLASIQVLIENFNVNTVYI 341
>gi|306818204|ref|ZP_07451935.1| possible phage terminase protein [Mobiluncus mulieris ATCC 35239]
gi|304649168|gb|EFM46462.1| possible phage terminase protein [Mobiluncus mulieris ATCC 35239]
Length = 470
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 58/389 (14%), Positives = 100/389 (25%), Gaps = 51/389 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ EV + N + ++ R GKTTL L+ + PG V
Sbjct: 33 PWQKLVAEVACE--RQAANPERARYQRVIVTVPRQSGKTTLIKALMAAVAQANPGCKVYY 90
Query: 113 LANSETQLKTTL--WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A + K + W E++K L + + ++ + ++
Sbjct: 91 TAQTR---KDAVEKWGELAKQLRKEMGTGPDGKPRVKVLEGTGNEKIVFQGTESVIQPFA 147
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL--------------- 215
G H I DEA ++ L
Sbjct: 148 PTP-----------GGLHGATSPLAIVDEAWAFDQAQGDDLMAALNPVGLTIPHSQVWII 196
Query: 216 -TERNANRFWI---------MTSNPRRLSGKF---YEIFNKPLDDWKRFQIDTRTVEGID 262
T + W+ TS+P + F + D + G
Sbjct: 197 STAGDTRSQWLKSLVDDGRAATSDPGATTAFFEWSADEETADADLRGDAALSFHPALGYT 256
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN-IIEEALNREPCPDPYAPLIMG 321
+ + R +P S I L A P +
Sbjct: 257 QELWKLKALGKDEKDHLYRRAYLNLWPTNAQTSIIDLETWDGLATEISETPT---GATIA 313
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D+A+ T+ + L SK I L + P A++ D +
Sbjct: 314 FDVADGRTGATIYAAWQQDNSVCLHRLISKAGAAWIEKAIEHLQDTLAPAALVADDSGDN 373
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ L G +Y + ++ A
Sbjct: 374 RPIIEGLRRAGATIYALKPKEYATANSEF 402
>gi|170023146|ref|YP_001719651.1| hypothetical protein YPK_0897 [Yersinia pseudotuberculosis YPIII]
gi|169749680|gb|ACA67198.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
YPIII]
Length = 595
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 52/163 (31%), Gaps = 20/163 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + +Y D+ + F DS +++
Sbjct: 333 PDGQWRYVITLEDAIDGGFNLADIERLRNKYNRDT--FNMLYMCVFVDSG-DSVFKFHML 389
Query: 303 EEALNREPCPDPYA----------PLIMGCDIAEEGGDNT--VVVLRR--GPVIEHLFD- 347
E+ + + G D A G +T ++ + G L
Sbjct: 390 EKCGVDIEMWQDHDFSAPRPFGNREVWGGFDPARSGDTSTFAIIAPPQFEGERFRVLVTF 449
Query: 348 -WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
W + N+I L ++Y I +D G + ++
Sbjct: 450 YWQGLNFNYQANQIKELFQRYNMTYIGVDITGIGNGVFELVQN 492
>gi|226953564|ref|ZP_03824028.1| possible ATPase terminase subunit [Acinetobacter sp. ATCC 27244]
gi|226835689|gb|EEH68072.1| possible ATPase terminase subunit [Acinetobacter sp. ATCC 27244]
Length = 374
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 64/357 (17%), Positives = 103/357 (28%), Gaps = 87/357 (24%)
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE---ASGTPDVINL 209
D + S G + + T RT G H + DE G D +
Sbjct: 6 LTGDPIILSNGAELRFLGTNYRTA--------QGPHGN----LYFDEIFWTYGF-DELEK 52
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYE-----IFNKPLDDWKRFQID--------TR 256
G T + S P ++ + Y+ FNK ++F+ID R
Sbjct: 53 VASGMATHDKWRKT--YFSTPSSITHEAYKFWTGTRFNKGKPKDQQFKIDLSHKALKHGR 110
Query: 257 TVE----------------GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
E G D E + Y + +F S PL+
Sbjct: 111 VCEDLMWRQIVTVEDAKEGGCDLFNIERLKFEYSPED--FANLFMCEFVDDGQ-SMFPLS 167
Query: 301 IIEEALNREP-----------CPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL 345
+++ + P P+ +G D A G + +VV+ G L
Sbjct: 168 MLQICMVDTLEIWNDFKIWHNRPFSNKPVWIGYDPALTGDNAGLVVVAPPAVAGGKFRVL 227
Query: 346 FD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD-------YLEMLGYHVYR 396
+ D +I + +Y I ID G + L Y
Sbjct: 228 EKHQFKGDDFSEQAERIRAITLRYNVTYIGIDTTGMGYGVAELVRAFFPALTTFNYSP-E 286
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGEL 453
V Q L+ RN R E + L Q+L S+K + + ++
Sbjct: 287 VKSQLVYKTLDVIRNGRLE--------FDAG----DKDLAQSLMSIKKTLTSSQKQI 331
>gi|291618711|ref|YP_003521453.1| P [Pantoea ananatis LMG 20103]
gi|291153741|gb|ADD78325.1| P [Pantoea ananatis LMG 20103]
Length = 588
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
E + RY + + + F D+ S L +++ + P
Sbjct: 348 LEQLRTRYSPED--YQNLLMCVF-MDDLASVFQLAMLQRCMVDSWEVWDDFEALALRPFG 404
Query: 315 YAPLIMGCDIAEE--GGDNT---VVVL--RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ GD+ V+ G L W D R + I L +
Sbjct: 405 WKEVWIGYDPAKGTKNGDSAGCVVIAPPAVPGGKFRILERHQWRGMDFRAQADAIKSLTQ 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGLGVYENVK 487
>gi|281356810|ref|ZP_06243301.1| protein of unknown function DUF264 [Victivallis vadensis ATCC
BAA-548]
gi|281316937|gb|EFB00960.1| protein of unknown function DUF264 [Victivallis vadensis ATCC
BAA-548]
Length = 417
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 75/419 (17%), Positives = 128/419 (30%), Gaps = 72/419 (17%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICL---ANSETQLKTTLWAEVSKWLSLLPNKHW 140
G GKT + + +L G L AN+ Q S LP
Sbjct: 29 GGSRSGKTFILVYAILVRALRAAGSRHAILRLHANTVRQ---------SIRFDTLPKVVK 79
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
L L + D L + + +EER D +G I +E
Sbjct: 80 LAFPGLGLSESK--VDQLIRLPNGSELWFGGLD---TEERADKILG---KEFATIYFNEC 131
Query: 201 SGTPDVINLGILGFLTERNA-----NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
S ++ + LT NR W NP S Y +F + D +
Sbjct: 132 S---ELGFEAVSTALTRLAQRTALKNRAWFDC-NPAGKSHWSYRLFIERRDPVSGLPLSF 187
Query: 256 RTVE---GIDPSFHEGIIARYGLDSDVT----RVEVC---GQFPQQDIDSFIPLNIIEEA 305
++P+ + + L+ + R + G + + +IE
Sbjct: 188 PDNYASMLLNPAENRENLPEGYLEETLAGLTERQRLRFQEGAWLDDLSGALWSTAMIER- 246
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNT----VVVLRRG--PVIEHLFDWSKTDLRT-TNN 358
+R +++G D A G ++ +V RG L D S +
Sbjct: 247 -SRVEAAPSLERIVIGVDPAVTSGKDSDETGIVTAGRGADGHYYVLADASCRERPAGWAA 305
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLE--MLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
++ ++R D ++ + NN G L L +V + + R E
Sbjct: 306 RVRDEYRRFRADRVVAEVNNGGDLVETVLRSQELDLPFRQVRAMRGKI-------ARAE- 357
Query: 417 HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+A E ++H G + L+ + P TG S D D L++
Sbjct: 358 --PVAALYEQGK-VHHVGCFRELEEQMTSFTPQTG-----------TGSPDRLDALVWA 402
>gi|323937704|gb|EGB33972.1| terminase [Escherichia coli E1520]
Length = 433
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 70/417 (16%), Positives = 122/417 (29%), Gaps = 62/417 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKWLSLLPNKHW 140
AG G GKT + + + PGI+ A + Q++ + EV+ L +
Sbjct: 25 AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVAADWGLNVKINE 84
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + CR S E+P T VG + DE
Sbjct: 85 GNKEVHFYYGRQYRGTTI--------------CR--SMEKPQTIVGFKIGNAL---VDEL 125
Query: 201 SGTPDV----INLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPL-------DDW 248
P I+ + + + R I + YE F K + +
Sbjct: 126 DILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVREKTELASLY 185
Query: 249 KRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
Q T E + + ++ Y ++ + + GQF + + N
Sbjct: 186 GLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYH-QFDRKLNN 242
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL---- 363
E P P+ +G D V VLR G + D I
Sbjct: 243 CEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAYDTPDMIRIIKERFWLY 302
Query: 364 ----VEKYRPDAIIIDANN-----TGARTCD--YLEMLGYHVYRVLGQKRAVDLEFCRNR 412
K R I DA+ + A T D L+ G++V V+ + +
Sbjct: 303 DGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV--VVNSSNPPVKDRVNSM 360
Query: 413 RTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ + + L SL+ + G E + G + +
Sbjct: 361 NA-MFCNANGERRYKVNVKRCPLYAE--SLEQQVWDEKG----EPDKKSGNDHPNDA 410
>gi|301025610|ref|ZP_07189133.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
69-1]
gi|300395930|gb|EFJ79468.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
69-1]
Length = 435
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 70/417 (16%), Positives = 122/417 (29%), Gaps = 62/417 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKWLSLLPNKHW 140
AG G GKT + + + PGI+ A + Q++ + EV+ L +
Sbjct: 27 AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVAADWGLNVKINE 86
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + CR S E+P T VG + DE
Sbjct: 87 GNKEVHFYYGRQYRGTTI--------------CR--SMEKPQTIVGFKIGNAL---VDEL 127
Query: 201 SGTPDV----INLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPL-------DDW 248
P I+ + + + R I + YE F K + +
Sbjct: 128 DILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVREKTELASLY 187
Query: 249 KRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
Q T E + + ++ Y ++ + + GQF + + N
Sbjct: 188 GLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYH-QFDRKLNN 244
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL---- 363
E P P+ +G D V VLR G + D I
Sbjct: 245 CEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAYDTPDMIRIIKERFWLY 304
Query: 364 ----VEKYRPDAIIIDANN-----TGARTCD--YLEMLGYHVYRVLGQKRAVDLEFCRNR 412
K R I DA+ + A T D L+ G++V V+ + +
Sbjct: 305 DGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV--VVNSSNPPVKDRVNSM 362
Query: 413 RTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ + + L SL+ + G E + G + +
Sbjct: 363 NA-MFCNANGERRYKVNVKRCPLYAE--SLEQQVWDEKG----EPDKKSGNDHPNDA 412
>gi|209918626|ref|YP_002292710.1| hypothetical protein ECSE_1435 [Escherichia coli SE11]
gi|209911885|dbj|BAG76959.1| conserved hypothetical protein [Escherichia coli SE11]
Length = 436
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 70/417 (16%), Positives = 122/417 (29%), Gaps = 62/417 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKWLSLLPNKHW 140
AG G GKT + + + PGI+ A + Q++ + EV+ L +
Sbjct: 28 AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVAADWGLNVKINE 87
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + CR S E+P T VG + DE
Sbjct: 88 GNKEVHFYYGRQYRGTTI--------------CR--SMEKPQTIVGFKIGNAL---VDEL 128
Query: 201 SGTPDV----INLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPL-------DDW 248
P I+ + + + R I + YE F K + +
Sbjct: 129 DILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVREKTELASLY 188
Query: 249 KRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
Q T E + + ++ Y ++ + + GQF + + N
Sbjct: 189 GLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYH-QFDRKLNN 245
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL---- 363
E P P+ +G D V VLR G + D I
Sbjct: 246 CEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAYDTPDMIRIIKERFWLY 305
Query: 364 ----VEKYRPDAIIIDANN-----TGARTCD--YLEMLGYHVYRVLGQKRAVDLEFCRNR 412
K R I DA+ + A T D L+ G++V V+ + +
Sbjct: 306 DGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV--VVNSSNPPVKDRVNSM 363
Query: 413 RTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ + + L SL+ + G E + G + +
Sbjct: 364 NA-MFCNANGERRYKVNVKRCPLYAE--SLEQQVWDEKG----EPDKKSGNDHPNDA 413
>gi|318604142|emb|CBY25640.1| phage terminase, ATPase subunit [Yersinia enterocolitica subsp.
palearctica Y11]
gi|318605359|emb|CBY26857.1| phage terminase, ATPase subunit [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 590
Score = 51.3 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 40/133 (30%), Gaps = 20/133 (15%)
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDI 324
+ + +F S P ++ + + P+ +G D
Sbjct: 357 SPAEYQNLLMCEFVDDQA-SVFPFAELQACMVDSLEEWEDYNPYSLRPFGHRPVWIGYDP 415
Query: 325 AE-EGGDNT---VVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+E GGD+ V+ + G L W D I L +KY + I IDA
Sbjct: 416 SEANGGDSAGCAVIAPPMVPGGKFRVLERHQWKGMDFEAQAKHIEELTQKYCVEYIGIDA 475
Query: 377 NNTGARTCDYLEM 389
G +
Sbjct: 476 TTVGQGVFQLVRQ 488
>gi|254465926|ref|ZP_05079337.1| phage DNA Packaging Protein [Rhodobacterales bacterium Y4I]
gi|206686834|gb|EDZ47316.1| phage DNA Packaging Protein [Rhodobacterales bacterium Y4I]
Length = 428
Score = 51.3 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 65/433 (15%), Positives = 119/433 (27%), Gaps = 67/433 (15%)
Query: 82 ISAGRGIGKTTLNA-WLVLWLMSTRPGI-----SVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A W+ RP + +A + Q++ + + +L
Sbjct: 36 ILGGRGAGKTRAGAEWVRSLAEGARPHDPGTARRIALVAETYDQVRDVM---IHGDSGIL 92
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P S + +S P+ G A
Sbjct: 93 ACSP------------PDRRPKWKASERKLIWPNGAEAQAFSAHDPEALRGPQFD---AA 137
Query: 196 INDE----ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
DE G + L + +T+ P R + + P +
Sbjct: 138 WADELAKWRKG--QESWDMLQFAL-RLGQDPRVCVTTTP-RNAPVLKRLLASPSTV-QTH 192
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ PSF E + +RY + + R E+ G + + EA E
Sbjct: 193 AATEANRANLAPSFLEEVRSRY-AGTRLGRQELDGVMLSDIQGALWTTAALVEAQVAEAP 251
Query: 312 PDPYAPLIMGCDIA---EEGGDNTVVVLRRGPVIEHLFDWS----------KTDLRTTNN 358
P +++ D A + D +V+ DW
Sbjct: 252 P--LDRVVVAVDPAVSAGKDSDACGIVVAGAVTRGKPQDWQAYVLADCTVQGVGPLAWAQ 309
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+ +++ + ++ + N GA L V RA+ ++ R E
Sbjct: 310 AVIAARDRFGAERVVAEVNQGGALVESVLRQADPLV-----PFRALHARKGKSARAEPVA 364
Query: 419 KMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + L L + + + +G S D D L++ E
Sbjct: 365 ALYEQGRVRHLPGLGELEDQMC-------------QMTPQGYRGGGSPDRVDALVWALHE 411
Query: 479 NPPRSDMDFGRCP 491
+ + R
Sbjct: 412 LIIQPAANLRRPQ 424
>gi|294338167|emb|CBJ94203.1| Putative phage DNA packaging protein (terminase) [Campylobacter
phage CPt10]
Length = 731
Score = 51.3 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 58/365 (15%), Positives = 112/365 (30%), Gaps = 63/365 (17%)
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
HC + + + + + K+T + + L + I++ +A
Sbjct: 260 DHCYDLTLEHHHLYYTNGVLS-HNSSKSTTTSVKLAHLYCFKKDINIGIVA--------- 309
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE-ERPD 182
S + + + L P + + S + ++ D
Sbjct: 310 --------YSGNSAREFLDKTKKMLIGLPIWMQPGTVTWNKGSIECENNIKILTDVPSSD 361
Query: 183 TFVGHHNTYGMAIINDEASGTPDVIN-LGILGFLTERNANRF--WIMTSNPRRLSGKFYE 239
F G T I+ DE + G L + F ++ S P+ + FY+
Sbjct: 362 AFRG---TSTNIIVVDECAYLDPAGWIDFTDGVLPSQAGLAFKKLVILSTPKGKN-HFYD 417
Query: 240 IFN--------------KPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
I+ + DW+ + + + F + I GL V
Sbjct: 418 IWQGAGDTLETSINGFVRHRVDWRLVPRFKSDGTKYDPEEFKQQQIKTGGL--VVWNSAY 475
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPC---------------PDPYAPLIMGCDIAEEGG 329
+F + + IP I++ +EP P P +MG D A+EG
Sbjct: 476 ECKF-EGSAMTLIPSEILDTYKPQEPIEVDNIKDSKILIYEEPIPGHKYVMGVDTAKEGA 534
Query: 330 DNT-VVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKYRPDAIIIDAN-NTGARTCD 385
D T V + + +K D ++ ++ II++ N +G D
Sbjct: 535 DFTGVQIFDITDLNFRQVASAKLKIDYMLLPELLNEYGLRFNQALIIVENNEGSGQVVAD 594
Query: 386 YLEML 390
L+
Sbjct: 595 ILKRD 599
>gi|224796473|ref|YP_002641230.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
gi|224497687|gb|ACN53304.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
Length = 450
Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 62/332 (18%), Positives = 110/332 (33%), Gaps = 51/332 (15%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM----STRP-GIS 109
Q E + +++H + V +F G I++ GKT L ++L++ + S +
Sbjct: 49 QKEVLFDIESHKYSKV------IFSGGIAS----GKTFLASYLLIKKLIENKSFYEQDTN 98
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ NS + L T ++ K LL + + S + ++ D
Sbjct: 99 NFIIGNSISLLMTNTIKQIEKICRLLGIDYQKKKSGQSFCKIAGFELNIYGGKNRD---- 154
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
F I +EA+ L +L L R I +N
Sbjct: 155 -------------AFSKIRGGNSAIIYVNEATVIHKETLLEVLKRL--RKGKSIIIFDTN 199
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQF 288
P + F + + D +K + T F E Y S + V G++
Sbjct: 200 PESPAHFFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHSPAYKARVLYGEW 258
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVLRRGPVIEHLFD 347
+ F E N++ IM D A GGDNT + + E +
Sbjct: 259 IVNESSLF-----NEMIFNQDYEFKSP---IMYIDPAFSVGGDNTAICVLERTF-EKFYA 309
Query: 348 WSKTDLRTTNN-----KISGLVEKYRPDAIII 374
+ D + N+ I L+E + + + I
Sbjct: 310 YIYQDQKPVNDSLMLNSIQVLIENFNVNTVYI 341
>gi|291336835|gb|ADD96368.1| phage terminase large subunit [uncultured organism
MedDCM-OCT-S09-C20]
Length = 454
Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 49/333 (14%), Positives = 104/333 (31%), Gaps = 32/333 (9%)
Query: 40 EKGTPLEGFSAP---RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
E P+E P + + + + +++ + + + G G GK+ A
Sbjct: 14 EPKRPVERAIDPGAADALRAKILADCLPAQREFLDDESHRIL--SYIGGFGSGKSFALAA 71
Query: 97 LVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD 156
+++L PG +++ + ++T L + + W S P P Y
Sbjct: 72 KLIFLGLRNPGGTLMACEPTFPMIRTVLVPAI-----DMALDQWDIEYSYRASPQPEY-- 124
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG----TPDVINLGIL 212
S+ + + + C++ + + A + DE T +L
Sbjct: 125 ----SINLPTGPVTIYCQSA-----ENYQRIRGQNICAAVWDECDTSPVDTAQKAGEMLL 175
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTRTVEGIDPSFHEGIIA 271
+ N+ + S P Y F D + ++ T+ + F +
Sbjct: 176 ARMRTGELNQLAVA-STPEG-FRWAYRTFVENDGPDKRLIRVRTQDNPHLPADFIPSLER 233
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
Y S + + + G F S P + P + +G D+ G
Sbjct: 234 NY--PSQLIQAYLEGHFVNLASCSLYP-EFDRSLNYCDTQPTENDTIWIGVDL-NVGNCV 289
Query: 332 TVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLV 364
T ++RRG + D + + +
Sbjct: 290 TQHLVRRGDEFHFFAEKVYRDTQQIAQGLKEMY 322
>gi|299531659|ref|ZP_07045064.1| putative phage associated protein [Comamonas testosteroni S44]
gi|298720375|gb|EFI61327.1| putative phage associated protein [Comamonas testosteroni S44]
Length = 436
Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 61/340 (17%), Positives = 122/340 (35%), Gaps = 41/340 (12%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++L + ++RP V+C E+ K + ++ +
Sbjct: 39 GGRGGGKSWTVAAVLLVMAASRPL-RVLCT------------REIQKSIKQSVHQ-LLKD 84
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHY-STMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
L+ ++ + GI+ + + ++++ + +F G + +EA G
Sbjct: 85 VITRLNLHAFFEVLETEVRGINGSLFLFSGLQSHTVDSIKSFEGCD-----IVWVEEAHG 139
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTRTVEGI 261
++ + + + + + NP + + Y+ F P D +I+ R
Sbjct: 140 VSKKSWDTLIPTIRKEGSEIWLTL--NPDMETDETYQRFIATPSPDTWVVEINWRDNPWF 197
Query: 262 DPSFHEGII-ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE---EALNREPCPDPYAP 317
E A+ + +D G+ + + + + R+ DP P
Sbjct: 198 PRVLDEERRKAKRTMLADDYAHIWEGKARRVAAGAIYRHEMESVYLDNRARDVPYDPTLP 257
Query: 318 LIMGCDIAEEGGDNTVVVLRRGP-----VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
+ D+ D + L + +I H+ D +T L K+ L ++ D +
Sbjct: 258 VHTVWDLGWN--DAMSIALVQRGPQDVRIIGHIEDSHRT-LDWYVAKLEKLPYRWGTDYL 314
Query: 373 IIDAN----NTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
D TG T L LG V+ Q RA D+E
Sbjct: 315 PHDGKTKNFQTGKSTEQLLRELGRR--SVMVQPRATDVEE 352
>gi|330503113|ref|YP_004379982.1| phage P2 terminase ATPase subunit, gpP-like protein [Pseudomonas
mendocina NK-01]
gi|328917399|gb|AEB58230.1| phage P2 terminase ATPase subunit, gpP-like protein [Pseudomonas
mendocina NK-01]
Length = 585
Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/238 (18%), Positives = 72/238 (30%), Gaps = 51/238 (21%)
Query: 244 PLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
W++ I G D + + Y D + QF DS PL ++
Sbjct: 326 DDKVWRQIVTILDAEARGCDLFDLDELRLEY--DGPAFDNLLMCQFVDDG-DSIFPLTML 382
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL----RRGPVIEHL--F 346
+ + + P + +G D AE G ++VL G L F
Sbjct: 383 QPCMVESWDWPDFKPFAARPFGDRQVWLGYDPAENGDSAGLMVLAPPTEPGGKFRVLDRF 442
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ D KI L + Y I ID G +
Sbjct: 443 QFRGMDFEAQAEKIRQLTQIYWVTYIGIDTTGMGTGVAQLVRQ----------------- 485
Query: 407 EFCRNRRTELH-------VKMADW--LEFASLINHSG---LIQNLKSLKSFIVPNTGE 452
F N RT + + M W + L +G + Q+L +++ + +G+
Sbjct: 486 -FFPNLRTFSYSPEVKTQLVMKAWDVVRKGRLEFDAGATDIAQSLMAIRK-TMTPSGK 541
>gi|294337972|emb|CBJ93810.1| putative phage DNA packaging protein (terminase) [Campylobacter
phage CP220]
Length = 744
Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 58/365 (15%), Positives = 112/365 (30%), Gaps = 63/365 (17%)
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
HC + + + + + K+T + + L + I++ +A
Sbjct: 260 DHCYDLTLEHHHLYYTNGVLS-HNSSKSTTTSVKLAHLYCFKKDINIGIVA--------- 309
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE-ERPD 182
S + + + L P + + S + ++ D
Sbjct: 310 --------YSGNSAREFLDKTKKMLIGLPIWMQPGTVTWNKGSIECENNIKILTDVPSSD 361
Query: 183 TFVGHHNTYGMAIINDEASGTPDVIN-LGILGFLTERNANRF--WIMTSNPRRLSGKFYE 239
F G T I+ DE + G L + F ++ S P+ + FY+
Sbjct: 362 AFRG---TSTNIIVVDECAYLDPAGWIDFTDGVLPSQAGLAFKKLVILSTPKGKN-HFYD 417
Query: 240 IFN--------------KPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
I+ + DW+ + + + F + I GL V
Sbjct: 418 IWQGAGDTLETSINGFVRHRVDWRLVPRFKSDGTKYDPEEFKQQQIKTGGL--VVWNSAY 475
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPC---------------PDPYAPLIMGCDIAEEGG 329
+F + + IP I++ +EP P P +MG D A+EG
Sbjct: 476 ECKF-EGSAMTLIPSEILDTYKPQEPIEVDNIKDSKILIYEEPIPGHKYVMGVDTAKEGA 534
Query: 330 DNTVVVLRRGPVI---EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN-NTGARTCD 385
D T V + + + K D ++ ++ II++ N +G D
Sbjct: 535 DFTGVQIFDTTDLNFRQVASAKLKIDYMLLPELLNEYGLRFNQALIIVENNEGSGQVVAD 594
Query: 386 YLEML 390
L+
Sbjct: 595 ILKRD 599
>gi|186896569|ref|YP_001873681.1| hypothetical protein YPTS_3269 [Yersinia pseudotuberculosis PB1/+]
gi|186699595|gb|ACC90224.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
PB1/+]
Length = 725
Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 43/144 (29%), Gaps = 18/144 (12%)
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA----------PLIMGCDIAEEG 328
QF F + +E+ L + + + G D A G
Sbjct: 389 AFNQLYMCQFVDSGDCVF-KFDQLEKCLTNVSTWEDHDVNAMRPFGNREVWAGYDPARTG 447
Query: 329 GDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
+ V++ + H+ W + +I + +Y I ID G
Sbjct: 448 DTASFVLVAPPQVDGEPFRVLHIETWHGFAFKYQVGRIKEYMTRYNITHIGIDTTGIGGP 507
Query: 383 TCDYLEML-GYHVYRVLGQKRAVD 405
C+ ++ V ++ + + +
Sbjct: 508 VCEMVQDFARREVTQIHYSQESKN 531
>gi|331677171|ref|ZP_08377867.1| putative phage terminase [Escherichia coli H591]
gi|331075860|gb|EGI47158.1| putative phage terminase [Escherichia coli H591]
Length = 436
Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 70/417 (16%), Positives = 129/417 (30%), Gaps = 62/417 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKWLSLLPNKHW 140
AG G GKT + + + PGI+ A + Q++ + EV+ L +
Sbjct: 28 AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVAADWGLNVKINE 87
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + CR S E+P T VG + DE
Sbjct: 88 GNKEVHFYYGRQYRGTTI--------------CR--SMEKPQTIVGFKIGNAL---VDEL 128
Query: 201 SGTPDV----INLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPL-------DDW 248
P I+ + + + R I + YE F K + +
Sbjct: 129 DILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVREKTELASLY 188
Query: 249 KRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
Q T E + + ++ Y ++ + + G+F + + N
Sbjct: 189 GLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLLGRFTNLTSGTVYH-QFDRKLNN 245
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP---VIEHLFDWSKTDLRTTNNKISGLV 364
E P P+ +G D V VLR G V E + + D+ + L
Sbjct: 246 CEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAYDTPDMIRLIKERFWLY 305
Query: 365 E-----KYRPDAIIIDANN-----TGARTCD--YLEMLGYHVYRVLGQKRAVDLEFCRNR 412
+ K R I DA+ + A T D L+ G++V V+ + +
Sbjct: 306 DGHDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV--VVNSSNPPVKDRVNSM 363
Query: 413 RTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ + + + SL+ + + G E + G + +
Sbjct: 364 NA-MFCNANGERRYKVNVKRCPVYAE--SLEQQVWDDKG----EPDKKSGNDHPNDA 413
>gi|300825021|ref|ZP_07105118.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
119-7]
gi|300522485|gb|EFK43554.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
119-7]
Length = 435
Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 70/417 (16%), Positives = 129/417 (30%), Gaps = 62/417 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKWLSLLPNKHW 140
AG G GKT + + + PGI+ A + Q++ + EV+ L +
Sbjct: 27 AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVAADWGLNVKINE 86
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + CR S E+P T VG + DE
Sbjct: 87 GNKEVHFYYGRQYRGTTI--------------CR--SMEKPQTIVGFKIGNAL---VDEL 127
Query: 201 SGTPDV----INLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPL-------DDW 248
P I+ + + + R I + YE F K + +
Sbjct: 128 DILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVREKTELASLY 187
Query: 249 KRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
Q T E + + ++ Y ++ + + G+F + + N
Sbjct: 188 GLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLLGRFTNLTSGTVYH-QFDRKLNN 244
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP---VIEHLFDWSKTDLRTTNNKISGLV 364
E P P+ +G D V VLR G V E + + D+ + L
Sbjct: 245 CEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAYDTPDMIRLIKERFWLY 304
Query: 365 E-----KYRPDAIIIDANN-----TGARTCD--YLEMLGYHVYRVLGQKRAVDLEFCRNR 412
+ K R I DA+ + A T D L+ G++V V+ + +
Sbjct: 305 DGHDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV--VVNSSNPPVKDRVNSM 362
Query: 413 RTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ + + + SL+ + + G E + G + +
Sbjct: 363 NA-MFCNANGERRYKVNVKRCPVYAE--SLEQQVWDDKG----EPDKKSGNDHPNDA 412
>gi|193062487|ref|ZP_03043581.1| terminase [Escherichia coli E22]
gi|192931609|gb|EDV84209.1| terminase [Escherichia coli E22]
Length = 433
Score = 51.3 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 70/417 (16%), Positives = 129/417 (30%), Gaps = 62/417 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKWLSLLPNKHW 140
AG G GKT + + + PGI+ A + Q++ + EV+ L +
Sbjct: 25 AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVAADWGLNVKINE 84
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + CR S E+P T VG + DE
Sbjct: 85 GNKEVHFYYGRQYRGTTI--------------CR--SMEKPQTIVGFKIGNAL---VDEL 125
Query: 201 SGTPDV----INLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPL-------DDW 248
P I+ + + + R I + YE F K + +
Sbjct: 126 DILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVREKTELASLY 185
Query: 249 KRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
Q T E + + ++ Y ++ + + G+F + + N
Sbjct: 186 GLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLLGRFTNLTSGTVYH-QFDRKLNN 242
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP---VIEHLFDWSKTDLRTTNNKISGLV 364
E P P+ +G D V VLR G V E + + D+ + L
Sbjct: 243 CEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAYDTPDMIRLIKERFWLY 302
Query: 365 E-----KYRPDAIIIDANN-----TGARTCD--YLEMLGYHVYRVLGQKRAVDLEFCRNR 412
+ K R I DA+ + A T D L+ G++V V+ + +
Sbjct: 303 DGHDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV--VVNSSNPPVKDRVNSM 360
Query: 413 RTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ + + + SL+ + + G E + G + +
Sbjct: 361 NA-MFCNANGERRYKVNVKRCPVYAE--SLEQQVWDDKG----EPDKKSGNDHPNDA 410
>gi|251810445|ref|ZP_04824918.1| large terminase subunit [Staphylococcus epidermidis BCM-HMP0060]
gi|251806049|gb|EES58706.1| large terminase subunit [Staphylococcus epidermidis BCM-HMP0060]
Length = 420
Score = 50.9 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/338 (13%), Positives = 109/338 (32%), Gaps = 40/338 (11%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
++ E++ H + + GRG GK++ + ++ + R ++ + +
Sbjct: 4 IKLSELLPKHFHSLWKATKDREKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVR 62
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
++ L T+++ ++ + H F+++ + + + R
Sbjct: 63 KTDNTLATSVFEQIKWAIEEQKVSHLFKVKVS------------PMEITYVPRGNRIIFR 110
Query: 175 TYSEERPDTFVGHHNTY---GMAIINDEASG-TPDVINLGILGFL---TERNANRFWIMT 227
+ P+ ++ + I + A T D + L + + +
Sbjct: 111 GA--QNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFS 168
Query: 228 SNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
NP + + YE +P + + I F + + + R E
Sbjct: 169 YNPPKRKQSWVNKKYETSFQPDNTFVHHS-TYLDNPFISKQFIQEAESAKERNEQRYRWE 227
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRG 339
G+ +P N ++ + D + + G D D V ++
Sbjct: 228 YMGEAIGS---GVVPFNNLQIETIPQEMIDGFDNIRNGLDFG-YADDPLAFVRWHYDKKK 283
Query: 340 PVIEHLFDWSKTDL--RTTNNKISGLVEKYRPDAIIID 375
VI + ++ + R N++ KY+ D I D
Sbjct: 284 RVIYAIDEYYGVQISNRQYANEMWK--RKYQSDDIYAD 319
>gi|332768290|gb|EGJ98475.1| hypothetical protein SF293071_0834 [Shigella flexneri 2930-71]
Length = 65
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 433 SGLIQNLKSLKSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
L L + G + +ESK+ + S + +D + FA D
Sbjct: 3 EKLKLELTT-PHRDFDRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 56
>gi|330996205|ref|ZP_08320095.1| phage terminase, large subunit, PBSX family [Paraprevotella
xylaniphila YIT 11841]
gi|329573709|gb|EGG55300.1| phage terminase, large subunit, PBSX family [Paraprevotella
xylaniphila YIT 11841]
Length = 430
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 59/349 (16%), Positives = 111/349 (31%), Gaps = 38/349 (10%)
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
E F I+ GRG GK+ A T A+S + T+ VS LS++
Sbjct: 22 EHFIILITGGRGSGKSFNAA--TFIERLTFEQSRDRTFAHSILYCRYTM---VSANLSII 76
Query: 136 PN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
P + ++ S + SD+++ G +T S + H
Sbjct: 77 PEIQEKIDIDGGSKYFKTTRSDIVNMFSGGRIMFRGI--KTSSGNQTAKLKSIHG--ITT 132
Query: 195 IINDEA-SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-- 251
+ DEA T + I+ + ++ I+ NP + Y+ + +
Sbjct: 133 FVCDEAEEWTNEQDFDKIMLSIRQKGIQNRIIIIMNPTDSNHFIYKKYIENTHKLVEIDG 192
Query: 252 ---QIDT------------RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
QI T ++ + P F + + + + V G++ +
Sbjct: 193 VPVQISTHPNVLHIHTTYFDNIDNLSPQFIKEVEQMKAENPEKYAHTVIGRWADVAEGA- 251
Query: 297 IPLNIIEEALNREPCPDPYAPLI-MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT 355
I + + I +G D D T +V+ + D +
Sbjct: 252 -----IYKKWGVVKSIPQWCKKIALGLDFG-FTHDETAIVMCGVMDNDLYIDEICYKTQM 305
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
I + Y+ +I D+ + R + G +Y V K +V
Sbjct: 306 LTKDIIQTLRPYQGMKVIADSAD--PRLIQEIHNAGIRIYPVEKGKGSV 352
>gi|238025823|ref|YP_002910054.1| phage terminase, ATPase subunit [Burkholderia glumae BGR1]
gi|237875017|gb|ACR27350.1| Phage terminase, ATPase subunit [Burkholderia glumae BGR1]
Length = 589
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 38/142 (26%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
E + RY +D + QF + S L ++ + P
Sbjct: 350 LERLRRRY--SADAFANLLMCQFIDDSV-SVFKLAELQRCMVDSWEEWADDFSPLLLRPF 406
Query: 314 PYAPLIMGCDIAEEGGDN--TVVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G VV R + + D I + +Y
Sbjct: 407 GYREVWVGYDPALTGDSAGLVVVAPPRVEGGTFRVLERHQFRGNDFEEQAAAIEQITRRY 466
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 467 NVGYIAIDTTGMGQGVYQLVRK 488
>gi|167567112|ref|ZP_02360028.1| phage terminase, ATPase subunit [Burkholderia oklahomensis EO147]
Length = 589
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + QF + S L+ ++ + P
Sbjct: 350 IDELRREYSAEE--FANLLMCQFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 406
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ + +G D A G +VV+ G L + D I + ++Y
Sbjct: 407 GHREVWVGYDPALTGDSAGLVVVAPPRVDGGAFRVLERHQFRGNDFEEQAAAIEAITQRY 466
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 467 HVGYIAIDTTGMGQGVYQLVRK 488
>gi|145298582|ref|YP_001141423.1| phage terminase ATPase subunit [Aeromonas salmonicida subsp.
salmonicida A449]
gi|145300715|ref|YP_001143556.1| phage terminase ATPase subunit [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851354|gb|ABO89675.1| phage terminase ATPase subunit [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853487|gb|ABO91808.1| phage terminase ATPase subunit [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 606
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 19/139 (13%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP-------- 317
E + Y +V +F D S +E A + Y P
Sbjct: 365 IEELKDEY--PEEVFDRLYLCRFID-DALSVFKFQDMERAGVDPTRWEDYKPGRPDPFGR 421
Query: 318 --LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ +G D + + T+VV+ + W + + +I+ + +K+R
Sbjct: 422 REVWLGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEITRIAKKFRV 481
Query: 370 DAIIIDANNTGARTCDYLE 388
+ +D + G D L+
Sbjct: 482 TYLGVDVSGIGVGVFDLLK 500
>gi|188532717|ref|YP_001906514.1| Terminase, ATPase subunit [Erwinia tasmaniensis Et1/99]
gi|188027759|emb|CAO95616.1| Terminase, ATPase subunit [Erwinia tasmaniensis Et1/99]
Length = 588
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 23/143 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----------NREPCPDP 314
E + RY + + + F D+ S L ++++ + P
Sbjct: 348 LEQLRTRYSPED--YQNLLMCVF-MDDLASVFQLAMLQKCMVDSWEVWDDFEALALRPFG 404
Query: 315 YAPLIMGCDIAE--EGGDNT---VVVL--RRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
+ + +G D A+ + GD+ V+ G L W D R + I L +
Sbjct: 405 WKEVWIGYDPAKGTQNGDSAGCVVIAPPAVPGGKFRILERHQWRGMDFRAQADAIKTLTQ 464
Query: 366 KYRPDAIIIDANNTGARTCDYLE 388
+Y I ID+ G + ++
Sbjct: 465 QYNVTYIGIDSTGVGLGVYENVK 487
>gi|219872451|ref|YP_002476937.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
gi|219694305|gb|ACL34832.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
Length = 450
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 60/332 (18%), Positives = 108/332 (32%), Gaps = 51/332 (15%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM----STRP-GIS 109
Q E + +++H + V +F G I++ GKT L ++L++ + S +
Sbjct: 49 QKEVLFDIESHDYSKV------IFSGGIAS----GKTFLASYLLIKKLIENKSFYEKDTN 98
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ NS L T ++ K + + + + L I
Sbjct: 99 NFIIGNSIGLLMTNTIKQIEKICG------FLGIDYQKKKSGESFCKIAGLELNI----- 147
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
Y + D+F I +EA+ L ++ L R I +N
Sbjct: 148 ------YGGKNRDSFSKIRGGNSAIIYVNEATVIHKETLLEVIKRL--RKGKAIIIFDTN 199
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQF 288
P + F F + D +K + T F E Y + V G++
Sbjct: 200 PEGPTHFFKTDFIENKDVFKTYNFTTYDNPLNSADFIETQKKLY-KHLPAYKARVLYGEW 258
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVLRRGPVIEHLFD 347
+ F E N++ IM D A GGDNT + + E +
Sbjct: 259 ILNESTLF-----NEMIFNQDYEFKSP---IMYIDPAFSVGGDNTAICVLE-RAFEKFYA 309
Query: 348 WSKTDLRTTN-----NKISGLVEKYRPDAIII 374
+ D + + I L+E + + + I
Sbjct: 310 YIYQDQKPVSDSLMLGSIQVLIENFNVNTVYI 341
>gi|329888629|ref|ZP_08267227.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568]
gi|328847185|gb|EGF96747.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568]
Length = 411
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/312 (13%), Positives = 85/312 (27%), Gaps = 38/312 (12%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP---RR 232
+ +P+ I +EA +L + + W NP
Sbjct: 106 WKGGKPEGIKSLEGAG--LTILEEAQEVRQASLDVLLPTILRTAISELW-AIWNPRLDTD 162
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
F+ KP R +I+ + E + + D G +
Sbjct: 163 PIDVFFRGPVKPKGAIVR-KINYDQNPHFPDALRELMELDFSKDKLRAAWIWLGGYMPSV 221
Query: 293 IDSFIPLNIIEEAL--NREPCPDPYAPLIMGCDIAEEGGDNTVVVL---RRGPVIEHLFD 347
+ ++EA R + +++G D + G D +VV G +I
Sbjct: 222 QGAIWNREGLDEAWREGRHAPEGSWGRVVVGVDPSGGGDDVGIVVAAEYGDGAIILEDAT 281
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLE 407
T + V+++ D ++ + N G L G V+ V
Sbjct: 282 CPATSPMAWATATAKAVDRWGADCVVAEKNFGGDMVESTLRAGGVKARVVM-----VTAS 336
Query: 408 FCRNRRTE----LHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+ R E L+ + + + + + G
Sbjct: 337 RGKQVRAEPVAALYDQKR--IRHREQFPLMEAEMLMTTPAGYQ---------------GE 379
Query: 464 KSTDYSDGLMYT 475
S + D L++
Sbjct: 380 DSPNRMDALVWA 391
>gi|294010834|ref|YP_003544294.1| hypothetical protein SJA_C1-08480 [Sphingobium japonicum UT26S]
gi|292674164|dbj|BAI95682.1| phage-related protein [Sphingobium japonicum UT26S]
Length = 419
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 64/428 (14%), Positives = 119/428 (27%), Gaps = 92/428 (21%)
Query: 89 GKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWL-------SLLPNKH 139
GK+ A L M G + + + + T +++LW + W+ S P +
Sbjct: 17 GKS--IAILYYIFMRCLLYAGSTHLIVRRTRTACESSLWRQTLNWMLDHMADPSGAPLRE 74
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
++ S L ++ + + E R D +G T I +E
Sbjct: 75 KVKLNSSDL--IAYFDNGSYIMFD-----------GLDENRLDKVLG---TEYQTIWMNE 118
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF-------YEIFNKPLDDWKRFQ 252
S + G L +P ++ + DW
Sbjct: 119 VSEFDWSDVQQLAGCLN-----------GSPTHNDNGLPIVRKMVFDCNPRFESDWDCKV 167
Query: 253 IDTRTVEGIDPSF--------------HEGIIARYGLDSDVTRVEVC-GQFPQQDIDSFI 297
+ E +A Y TR G + Q+ ++
Sbjct: 168 FRDGQNPVNNQPLNDVQKYGKVKVQNVDEEYLAIYANADPRTRARYLDGDWSAQNDNAIF 227
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT------VVVLRRGPVIEHLFDWSKT 351
L+ E +++G D A + + V + + K
Sbjct: 228 DLDNFERNRRFGIFAKDLERIVIGVDPASKSKKESDLTGIIVAGMLKDEAYILADLTGKY 287
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML--GYHVYRVLGQKRAVDLEFC 409
K++ + Y+ D+II++ NN G + L V +V + +
Sbjct: 288 TPEQVAQKVTEAFDTYQADSIIVETNNGGDWIENGLRQYAPNLPVKQVTASRGKLT---- 343
Query: 410 RNRRTE--LHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD 467
R E + D + N S L + + AKS D
Sbjct: 344 ---RAEPIALIYAQDKVHHVGH-NLSELETQM-----YEF---------GMERGAAKSPD 385
Query: 468 YSDGLMYT 475
D L++
Sbjct: 386 RMDALVWA 393
>gi|329735579|gb|EGG71866.1| phage terminase, large subunit, PBSX family [Staphylococcus
epidermidis VCU028]
Length = 420
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/338 (13%), Positives = 109/338 (32%), Gaps = 40/338 (11%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
++ E++ H + + GRG GK++ + ++ + R ++ + +
Sbjct: 4 IKLSELLPKHFHSLWKATKDRKKLNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVR 62
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
++ L T+++ ++ + H F+++ + + + R
Sbjct: 63 KTDNTLATSVFEQIKWAIEEQKVSHLFKVKVS------------PMEITYVPRGNRIIFR 110
Query: 175 TYSEERPDTFVGHHNTY---GMAIINDEASG-TPDVINLGILGFL---TERNANRFWIMT 227
+ P+ ++ + I + A T D + L + + +
Sbjct: 111 GA--QNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFS 168
Query: 228 SNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
NP + + YE +P + + I F + + + R E
Sbjct: 169 YNPPKRKQSWVNKKYETSFQPDNTFVHHS-TYLDNPFISKQFIQEAESTKERNELRYRWE 227
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRG 339
G+ +P N ++ + D + + G D D V ++
Sbjct: 228 YMGEAIGS---GVVPFNNLQIETIPQEMIDGFDNIRNGLDFG-YADDPLAFVRWHYDKKK 283
Query: 340 PVIEHLFDWSKTDL--RTTNNKISGLVEKYRPDAIIID 375
VI + ++ + R N++ KY+ D I D
Sbjct: 284 RVIYAIDEYYGVQISNRQYANEMWK--RKYQSDDIYAD 319
>gi|251782540|ref|YP_002996842.1| phage terminase [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242391169|dbj|BAH81628.1| phage terminase [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 476
Score = 50.9 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 53/347 (15%), Positives = 111/347 (31%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + + A + + + GKT + + LW + G+ ++
Sbjct: 48 PWQENMLIPIMAVDEDGLWVHQKYGYAIPRRN----GKTEVVYIVELWAL--HKGLKILH 101
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + + + + + A + + G + +
Sbjct: 102 TAHRISTSHA-SFEKVKKYLEMS---GYVDGEDFISNKAKGQERIEFKASGAVIQFRT-- 155
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT + + F +I DEA + +T+ + N IM P
Sbjct: 156 -RTSNGGLGEGFD--------LLIIDEAQEYTSEQESALKYTVTDSD-NPMTIMCGTPPT 205
Query: 233 --LSGKFYEIFNKP-------LDDWKRFQI-------DTRTVEGIDPS-----FHEGIIA 271
+G +E + K W + + D + +PS I A
Sbjct: 206 MVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYIANPSMGFHLNERKIEA 265
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D ++ G +P + S I + L E P+ + L +G ++G +
Sbjct: 266 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEWAK--LKVEQVPELKSKLFVGIKFGQDGNN 323
Query: 331 NT-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + R + +R I ++ ++ID
Sbjct: 324 VSLSIAARTSENKVFVEVIDCLSVRNGTQWIINFLKSADIAKVVIDG 370
>gi|167584288|ref|ZP_02376676.1| bacteriophage terminase, ATPase subunit [Burkholderia ubonensis Bu]
Length = 520
Score = 50.5 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/224 (14%), Positives = 54/224 (24%), Gaps = 47/224 (20%)
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDDWKRFQIDTRTVEG 260
+N +++ + S P +S + Y E +N+ +D
Sbjct: 196 ELNKVAQAMASQKQWRKT--YFSTPSSISHQAYPFWSGEAYNRGRAKADHIHLDISHAAL 253
Query: 261 IDPSFHEGIIAR----------------------YGLDSDVTRVEVCGQFPQQDIDSFIP 298
E R +D QF S
Sbjct: 254 SGGRLCEDRQWRQIVTIEDAAAMGCDLFDLDELRLENSADDFAQLYLCQFIDDSA-SIFK 312
Query: 299 LNIIEEALNRE-----------PCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIE 343
I+ + P + P+ +G D A G +V++ G
Sbjct: 313 FADIQRCMIDSWEEWDDVEFLIQRPFGHRPVWLGYDPALSGDSAGLVIVAPPAVPGGKFR 372
Query: 344 HLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
L W D I L E+Y + ID G
Sbjct: 373 VLEKMQWRGMDFEAQAESIRQLTERYTVTYMAIDTTGIGQGVYQ 416
>gi|300922729|ref|ZP_07138820.1| hypothetical protein HMPREF9548_00965 [Escherichia coli MS 182-1]
gi|300420946|gb|EFK04257.1| hypothetical protein HMPREF9548_00965 [Escherichia coli MS 182-1]
Length = 181
Score = 50.5 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 19/145 (13%)
Query: 317 PLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPD 370
P+ +G D + G VVL G L W D T I L EKY +
Sbjct: 1 PVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYNVE 60
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
I IDA G + A D+ + +T + +K D + +
Sbjct: 61 YIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRG-CL 110
Query: 431 NHSGLIQNLKS---LKSFIVPNTGE 452
+ ++ S + ++G
Sbjct: 111 EYDVSATDITSSFMAIRKTMTSSGR 135
>gi|282534188|gb|ADA82296.1| putative terminase [Escherichia phage K1H]
gi|282535239|gb|ADA82445.1| putative terminase [Escherichia phage K1ind3]
Length = 416
Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 65/413 (15%), Positives = 117/413 (28%), Gaps = 63/413 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
G G GKT + +L M PG + + ++ + + + +
Sbjct: 24 GGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYP------TFEEAANLLGL 77
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L D + + +CR S + P + VG A + DE
Sbjct: 78 DVLVKS-----GDKEVVVTRGKTVLGTVICR--SMDNPGSIVGF---KIAAAVVDELDVL 127
Query: 204 ----PDVINLGILG--FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT-R 256
++ I+ L +T+ P + + P + Q T
Sbjct: 128 SREKAELAWNKIVARMRLVIPGVTNHISVTTTPEGFKFVYAKFKENPTPSYSMVQASTHE 187
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-----EPC 311
+ P + + Y + + + G+F S + A +R +
Sbjct: 188 NARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGS------VYYAYDRRKHRSKET 239
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
P L +G D + V V R+ D T I+ K +
Sbjct: 240 IQPGDTLYIGQDFNVTKNASAVYVQRKDGWHAVAELKGLFDTPDTVRVITEKW-KSQGHR 298
Query: 372 III--DANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
I++ DA+ +T L+ G+ V D N
Sbjct: 299 IVVYPDASGKNRKTNSASISDIALLQQAGFDVRAKSANPPVKDRVLAVN----------T 348
Query: 423 WLEFASLINHSGLIQNL-KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
LE L + L + K+L+ + G E + +D L Y
Sbjct: 349 ALEKGKLWVNDHLCPEIAKTLEQQAYDDNG----EPAKDGIID--HMADALGY 395
>gi|84393331|ref|ZP_00992091.1| putative phage gene [Vibrio splendidus 12B01]
gi|84376047|gb|EAP92935.1| putative phage gene [Vibrio splendidus 12B01]
Length = 590
Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 18/156 (11%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----IPLNIIEEALNREPCPDPYAP---- 317
+ + Y + F + F + +++ A ++ P P
Sbjct: 353 IDELREEYSQED--FNNLFMCMFVDGALSVFKFSDLEKGMVDAAHWQDFKPKNKQPFARR 410
Query: 318 -LIMGCDIAEEGGDNTVVVL----RRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPD 370
+ +G D + + +VV+ G L W + + ++I + ++Y+
Sbjct: 411 EVWLGYDPSRTRDNACLVVVAPPAVAGEKFRVLEKHYWKGLNFQYHVSEIDKVFQRYKVT 470
Query: 371 AIIIDANNTGARTCDYL-EMLGYHVYRVLGQKRAVD 405
I +D G D + + + + +
Sbjct: 471 YIGVDTTGIGGGVWDLISKKYPREAHAIHYSNENKN 506
>gi|311993449|ref|YP_004010314.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Acj9]
gi|295917406|gb|ADG60077.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Acj9]
Length = 609
Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 62/365 (16%), Positives = 113/365 (30%), Gaps = 62/365 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q + ++++ + ++ V K + +GKTT+ A + W ++
Sbjct: 141 RDYQKDMLKIMAENRMS--------VSKLSRQ----LGKTTVVAIFLAWFACFNKDKNIG 188
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
LA+ + + AEV L L W + G Y+
Sbjct: 189 ILAHKGS-----MSAEV---LDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSAISAYAA 240
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSN 229
PD G I DE + P + L I ++ + I+T+
Sbjct: 241 --------SPDAVRG---NSFSLIYIDECAFIPNFNDAWLAIQPVISS-GRHSKIIITTT 288
Query: 230 PRRLSGKFYEIFN----------KPLDDWKRFQIDTRTVEGI-DPSFHEGIIARYGLDSD 278
P ++ FY+I+ +W + + + D +H G +
Sbjct: 289 PNGMN-HFYDIWTAAVEGISGFVPYESEWNAVKERLYDDKDVFDDGWHFSFTTIGGSSVE 347
Query: 279 VTRVEVCGQFPQQDIDSFI-----------PLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
R E G F + P+N+ + + PDP I D AE
Sbjct: 348 QFRQEHVGVFAGGQGTLSLRHETCNLKLETPINVGDSTFYKYKEPDPTRKYIATLDSAEG 407
Query: 328 -GGDNTVVVLRRGPVIE----HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
G D + + + + + + I + Y I I+ N+TG
Sbjct: 408 RGQDYHCMNIIDVTDEQWEQVAVLHSNTISHLILPDIILKHLLDYNEAPIYIELNSTGVS 467
Query: 383 TCDYL 387
L
Sbjct: 468 IAKTL 472
>gi|223935635|ref|ZP_03627551.1| protein of unknown function DUF264 [bacterium Ellin514]
gi|223895643|gb|EEF62088.1| protein of unknown function DUF264 [bacterium Ellin514]
Length = 437
Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 57/348 (16%), Positives = 99/348 (28%), Gaps = 54/348 (15%)
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS-EERPDTFVGHHNTYGMAI 195
K W ++ A + T R YS P+ G +
Sbjct: 71 CKEWARTMQIAEPDADEVVFDSKTDFSAHVLQFKTGLRIYSLSSNPNALAGKRGH----V 126
Query: 196 INDEASGTPDV--INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN--KPLDD---W 248
I DE + D + T + S R + F E+ K + W
Sbjct: 127 ILDEFALHADQRLLYRIAKPVTTWGGQ---LEIISTHRGANSVFNEMIRGIKENGNKMGW 183
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDS--DVTRVEVCGQ-------------FPQQDI 293
++ I E I A+ G + + V + P +
Sbjct: 184 SHHKVTLHDA--IAEGLVERINAKTGRNESREAYLARVESECLDQEQWLQEYCCVPADET 241
Query: 294 DSFIPLNIIEEALNREPCPDPY-----APLIMGCDIAEEGGDNTV--VVLRRGPVI--EH 344
+FI ++I + Y PL +G D+ + D TV V + G VI
Sbjct: 242 SAFITYDMISGCEDDCLKDFNYLAECKNPLYLGVDVGRK-RDLTVMDVGEKIGDVIWDRL 300
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML-GYHVYRVLGQKRA 403
+ ++ L+ + IDA G + + G+ V V+
Sbjct: 301 RIEMQGRTFAEQEFELERLLALPKLRRACIDATGIGMQLAERARERFGWKVEPVMFTAP- 359
Query: 404 VDLEFCRNRRTELHVKMADWLE--FASLINHSGLIQNLKSLKSFIVPN 449
+ EL + E + L +L+ +K I +
Sbjct: 360 --------MKEELAFPLRGAFEDRTLRIARDPQLRADLRGIKKEITTS 399
>gi|83950455|ref|ZP_00959188.1| Putative large terminase [Roseovarius nubinhibens ISM]
gi|83838354|gb|EAP77650.1| Putative large terminase [Roseovarius nubinhibens ISM]
Length = 434
Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 58/427 (13%), Positives = 117/427 (27%), Gaps = 75/427 (17%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTT-LWAEVSK 130
AI GRG GKT A W+ + G + + + Q++ ++ E S
Sbjct: 41 AIMGGRGAGKTRAGA---EWVRAAVEGATPGAPGRCRRIALVGETVDQVREVMIFGE-SG 96
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
L+ P E Q+ +S P+ G
Sbjct: 97 ILACSPPDRRPEWQASR---------------RRLVWPNGAEAAVFSAHDPEALRGPQFD 141
Query: 191 YGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
DE + + L + + I + R G ++ P
Sbjct: 142 GA---WLDEMAKWKKARATWDMLQFALRLGDDPQ--ICVTTTPRNVGVLKDVLAAPSTV- 195
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
+ SF + ARY + + + R E+ G ++ + L ++ A R
Sbjct: 196 VTQAPTEANRAHLAESFLAEVRARY-VGTRLGRQELDGILLEEAEGALWSLAALDAA--R 252
Query: 309 EPCPDPYAPLIMGCDI---AEEGGDNTVVVLRRGPVIEHLFDWS----------KTDLRT 355
+ +++ D G D +++ + +W
Sbjct: 253 VSKLPELSRIVVAVDPPVTGHAGSDECGIIVAGVDQSGPVQEWRAYVLADRSVSGMSPTG 312
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNRR 413
+E++ D ++ + N G L + V + R
Sbjct: 313 WAGAAIRAMEEFGADKMVAEVNQGGDLVETVLRQIDPLIPFRGVHAS-------RGKQAR 365
Query: 414 TELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
E + + + L ++++ + G S D +D L+
Sbjct: 366 AEPVAALYEQGRVHHMAGLDRLEDQMRAMTTRGYEGRG-------------SPDRADALV 412
Query: 474 YTFAENP 480
+ E
Sbjct: 413 WALHELV 419
>gi|284921252|emb|CBG34318.1| phage protein [Escherichia coli 042]
gi|323942326|gb|EGB38497.1| terminase [Escherichia coli E482]
Length = 433
Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 69/417 (16%), Positives = 123/417 (29%), Gaps = 62/417 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKWLSLLPNKHW 140
AG G GKT + + + PGI+ A + Q++ + EV+ L +
Sbjct: 25 AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVAADWGLNVKINE 84
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + CR S E+P T VG + DE
Sbjct: 85 GNKEVHFYYGRQYRGTTI--------------CR--SMEKPQTIVGFKIGNAL---VDEL 125
Query: 201 SGTPDV----INLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPL-------DDW 248
P I+ + + + R I + YE F K + +
Sbjct: 126 DILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVREKTELASLY 185
Query: 249 KRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
Q T E + + ++ Y ++ + + GQF + + N
Sbjct: 186 GLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYH-QFDRKLNN 242
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL---- 363
E P P+ +G D V VLR G + D I
Sbjct: 243 CEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAYDTPDMIRIIKERFWLY 302
Query: 364 ----VEKYRPDAIIIDANN-----TGARTCD--YLEMLGYHVYRVLGQKRAVDLEFCRNR 412
K R I DA+ + A T D L+ G++V V+ + +
Sbjct: 303 DGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV--VVNSSNPPVKDRVNSM 360
Query: 413 RTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ + + + SL+ + + G E + G + +
Sbjct: 361 NA-MFCNANGERRYKVNVKRCPVYAE--SLEQQVWDDKG----EPDKKSGNDHPNDA 410
>gi|117623621|ref|YP_852534.1| putative phage terminase [Escherichia coli APEC O1]
gi|331672908|ref|ZP_08373694.1| putative phage terminase [Escherichia coli TA280]
gi|115512745|gb|ABJ00820.1| putative phage terminase [Escherichia coli APEC O1]
gi|309701027|emb|CBJ00325.1| phage protein [Escherichia coli ETEC H10407]
gi|331070129|gb|EGI41498.1| putative phage terminase [Escherichia coli TA280]
Length = 436
Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 69/417 (16%), Positives = 123/417 (29%), Gaps = 62/417 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKWLSLLPNKHW 140
AG G GKT + + + PGI+ A + Q++ + EV+ L +
Sbjct: 28 AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIFYPTVEEVAADWGLNVKINE 87
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + CR S E+P T VG + DE
Sbjct: 88 GNKEVHFYYGRQYRGTTI--------------CR--SMEKPQTIVGFKIGNAL---VDEL 128
Query: 201 SGTPDV----INLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPL-------DDW 248
P I+ + + + R I + YE F K + +
Sbjct: 129 DILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVREKTELASLY 188
Query: 249 KRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
Q T E + + ++ Y ++ + + GQF + + N
Sbjct: 189 GLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYH-QFDRKLNN 245
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL---- 363
E P P+ +G D V VLR G + D I
Sbjct: 246 CEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAYDTPDMIRIIKERFWLY 305
Query: 364 ----VEKYRPDAIIIDANN-----TGARTCD--YLEMLGYHVYRVLGQKRAVDLEFCRNR 412
K R I DA+ + A T D L+ G++V V+ + +
Sbjct: 306 DGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV--VVNSSNPPVKDRVNSM 363
Query: 413 RTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ + + + SL+ + + G E + G + +
Sbjct: 364 NA-MFCNANGERRYKVNVKRCPVYAE--SLEQQVWDDKG----EPDKKSGNDHPNDA 413
>gi|319896520|ref|YP_004134713.1| phage terminase atpase subunit protein [Haemophilus influenzae
F3031]
gi|317432022|emb|CBY80370.1| Probable phage terminase ATPase subunit protein [Haemophilus
influenzae F3031]
Length = 556
Score = 50.5 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 25/194 (12%)
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---------REPCPDPY 315
E + RY + F +++ ++ + P
Sbjct: 367 NIEKLKQRYSKY--AFNQLYMCVWIDDADSIFTVHQLLKCGVDISKWKDFNPKADRPFGD 424
Query: 316 APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ G D A G + V++ + + W N+I L EKY
Sbjct: 425 REVWGGFDPAHSGDGASFVIIAPPALPSEKYRVLARYQWQGLSYVYQANQIRALYEKYNM 484
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
I IDA G + ++ ++ A + + +T + +K+ D +E +
Sbjct: 485 TYIGIDATGVGYGVYELVKE--------FARRAATAIIYNPESKTGMVLKVHDLVEHGQI 536
Query: 430 INHSGLIQNLKSLK 443
+ L + +
Sbjct: 537 EWSEKELDILSTNQ 550
>gi|282533135|gb|ADA82244.1| putative terminase [Escherichia phage K1G]
Length = 416
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 65/413 (15%), Positives = 117/413 (28%), Gaps = 63/413 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
G G GKT + +L M PG + + ++ + + + +
Sbjct: 24 GGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYP------TFEEAANLLGL 77
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L D + + +CR S + P + VG A + DE
Sbjct: 78 DVLVKS-----GDKEVVVTRGKTVLGTVICR--SMDNPGSIVGF---KIAAAVVDELDVL 127
Query: 204 ----PDVINLGILG--FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT-R 256
++ I+ L +T+ P + + P + Q T
Sbjct: 128 SREKAELAWNKIVARMRLVIPGVINHISVTTTPEGFKFVYAKFKENPTPSYSMVQASTHE 187
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-----EPC 311
+ P + + Y + + + G+F S + A +R +
Sbjct: 188 NARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGS------VYYAYDRRKHRSKEV 239
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
P L +G D + V V R+ D T I+ K +
Sbjct: 240 IQPGDTLYIGQDFNVTKNASAVYVQRKDGWHAVAELKGLFDTPDTVRVITEKW-KSQGHR 298
Query: 372 III--DANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
I++ DA+ +T L+ G+ V D N
Sbjct: 299 IVVYPDASGKNRKTNSASISDIALLQQAGFDVRAKSANPPVKDRVLAVN----------T 348
Query: 423 WLEFASLINHSGLIQNL-KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
LE L + L + K+L+ + G E + +D L Y
Sbjct: 349 ALEKGKLWVNDHLCPEIAKTLEQQAYDDNG----EPAKDGIID--HMADALGY 395
>gi|282547341|gb|ADA82397.1| putative terminase [Escherichia phage K1ind2]
Length = 416
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 65/413 (15%), Positives = 117/413 (28%), Gaps = 63/413 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
G G GKT + +L M PG + + ++ + + + +
Sbjct: 24 GGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYP------TFEEAANLLGL 77
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L D + + +CR S + P + VG A + DE
Sbjct: 78 DVLVKS-----GDKEVVVTRGKTVIGTVICR--SMDNPGSIVGF---KIAAAVVDELDVL 127
Query: 204 ----PDVINLGILG--FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT-R 256
++ I+ L +T+ P + + P + Q T
Sbjct: 128 SREKAELAWNKIVARMRLVIPGVINHISVTTTPEGFKFVYAKFKENPTPSYSMVQASTHE 187
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-----EPC 311
+ P + + Y + + + G+F S + A +R +
Sbjct: 188 NARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGS------VYYAYDRRKHRSKET 239
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
P L +G D + V V R+ D T I+ K +
Sbjct: 240 IQPGDTLYIGQDFNVTKNASAVYVQRKDGWHAVAELKGLFDTPDTVRVITEKW-KSQGHR 298
Query: 372 III--DANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
I++ DA+ +T L+ G+ V D N
Sbjct: 299 IVVYPDASGKNRKTNSASISDIALLQQAGFDVRAKSANPPVKDRVLAVN----------T 348
Query: 423 WLEFASLINHSGLIQNL-KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
LE L + L + K+L+ + G E + +D L Y
Sbjct: 349 ALEKGKLWVNDHLCPEIAKTLEQQAYDDNG----EPAKDGIID--HMADALGY 395
>gi|332533822|ref|ZP_08409678.1| phage terminase, ATPase subunit [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036753|gb|EGI73216.1| phage terminase, ATPase subunit [Pseudoalteromonas haloplanktis
ANT/505]
Length = 382
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPV--IEHLFDWSKTDLRTTNNKISGL 363
P P+++G D A G +V + ++ G + D S D ++I L
Sbjct: 198 ERPYGLKPVVIGFDPARFGDKASVAILSAPMKPGEKFLLLEAIDLSGNDFEAMASEIKLL 257
Query: 364 VEKYRPDAIIIDANNTGART 383
EKY I +D G
Sbjct: 258 TEKYNVVHIGVDTTGIGYGV 277
>gi|220903520|ref|YP_002478832.1| hypothetical protein Ddes_0239 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219867819|gb|ACL48154.1| protein of unknown function DUF264 [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 615
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 18/155 (11%)
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN- 307
+ +D G + + Y + R +F + F+ L ++E +
Sbjct: 361 RIVTLDDAEAGGCNLFNRADLEQEYSPED--MRQLFGCEFIDDTLAVFL-LGLLEGCMED 417
Query: 308 --------REPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDL 353
R+ P A + G D + D + VVL + G I L W
Sbjct: 418 PDGWGIDLRQARPVDNAGVWGGYDPSRTRDDASFVVLLPPQKAGDKIRTLERHTWKGKSY 477
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+I L +KYR + ID G + +
Sbjct: 478 LWQVGRIRELHDKYRFQHMGIDVTGPGQAVLENVR 512
>gi|294624257|ref|ZP_06702968.1| phage-related terminase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292601451|gb|EFF45477.1| phage-related terminase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 587
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR------------EPCPD 313
+ + Y D + +F S PL +++ + P P
Sbjct: 349 IDELREEY--SPDAFANLLMCEFVDDGA-SIFPLAMLQPCMVDSWIEWGQDYKPFAPRPY 405
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D AE G +VVL + G L + D +I + +Y
Sbjct: 406 GDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAAEIERITRRY 465
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G+ ++
Sbjct: 466 WVTYIGIDTTGMGSGVAQLVKQ 487
>gi|327198086|ref|YP_004306453.1| gp41 [Burkholderia phage KL3]
gi|310657220|gb|ADP02334.1| gp41 [Burkholderia phage KL3]
Length = 611
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 38/142 (26%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
E + RY + + QF + S L ++ + P
Sbjct: 372 LERLRRRYSAE--AFANLLMCQFIDDSV-SVFKLAELQRCMVDSWEEWADDFSPLLLRPF 428
Query: 314 PYAPLIMGCDIAEEGGDN--TVVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G VV R + + D I + ++Y
Sbjct: 429 GYREVWVGYDPALTGDSAGLVVVAPPRVEGGTFRVLERHQFRGNDFEEQAAAIEQITQRY 488
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 489 NVGYIAIDTTGMGQGVYQLVRK 510
>gi|320535831|ref|ZP_08035911.1| conserved domain protein [Treponema phagedenis F0421]
gi|320147321|gb|EFW38857.1| conserved domain protein [Treponema phagedenis F0421]
Length = 488
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 57/356 (16%), Positives = 101/356 (28%), Gaps = 92/356 (25%)
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIF--NKPLDDWKRF 251
I+ DE + P+ I A + + P G+FY++F K + R+
Sbjct: 99 IVFDEMAIYPENKAEVIYTAGIPVTARGGCVEIGSTPLGKIGRFYDVFIDKKKYRTYNRY 158
Query: 252 QID-----------TRTVEGIDPSFHEGIIARYGLDSDV----------TRVEVCGQFPQ 290
I V E + RYG + + E F
Sbjct: 159 TIPWWFSAALCTNVEEAVRNAPAMDTEERVYRYGTPPLIEAFEAMLLEDFQQEFECTFID 218
Query: 291 QDIDSFIPLNIIEE------ALNREPCP-------------------------------- 312
SFI L++I A +R
Sbjct: 219 -SALSFITLDLIYANTPGMRAEDRTEEIRGGNIEDADIEDEKDLEIKIFRTSDELCAGYS 277
Query: 313 -DPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ + L +G D+A D V+ + ++ V E K + + ++I ++
Sbjct: 278 REEHGALYLGYDVARY-RDAAVIYVLGVVDGKKKCVAEIEMKNKKFEYQR--DEIRKIMR 334
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE-LHVKMADWL 424
+ ID G T + L+ + ++ E L + + L
Sbjct: 335 QLPVVRGCIDRTGQGLDTTETLQKE--------FGESKLEGIDFTTPAKEVLAMGVRTGL 386
Query: 425 EFAS--LINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD---GLMYT 475
E L N + + S+K I G +S R K ++D
Sbjct: 387 EKREFLLPNDQKFRKQIHSIKR-IPSAGGSFRYDSTRDKDG----HADSFWAFALA 437
>gi|327198304|ref|YP_004306879.1| gp35 [Burkholderia phage KS14]
gi|310657267|gb|ADP02380.1| gp35 [Burkholderia phage KS14]
Length = 604
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + QF S PL ++ + P P
Sbjct: 366 IDELRLEYSAQE--YANLLMCQFIDDTA-SIFPLAELQRCMVDSWEEWADDFKPLAPRPF 422
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFD--WSKTDLRTTNNKISGLVEKY 367
+ P+ +G D A G +VV+ G L + D I + ++Y
Sbjct: 423 GFRPVWVGYDPALSGDSAGLVVVAPPAVPGGKFRVLHKCQFRGMDFEGQAEAIRQITQQY 482
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
+ + ID G ++
Sbjct: 483 NVEYMSIDTTGIGQGVYQLVKQ 504
>gi|21243371|ref|NP_642953.1| phage-related terminase [Xanthomonas axonopodis pv. citri str. 306]
gi|21108918|gb|AAM37489.1| phage-related terminase [Xanthomonas axonopodis pv. citri str. 306]
Length = 594
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-------NREPCPDPYAP- 317
E + Y D + F S PL +++ + ++ P P
Sbjct: 356 IEELREEY--SPDAFANLLMCDFVDDGA-SIFPLAMLQPCMVDSWVEWGQDYKPFAARPY 412
Query: 318 ----LIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D AE G +VVL + G L + D +I + +Y
Sbjct: 413 GDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAAEIERITRRY 472
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G+ ++
Sbjct: 473 WVTYIGIDTTGMGSGVAQLVKQ 494
>gi|317120885|ref|YP_004100888.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
12885]
gi|315590865|gb|ADU50161.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
12885]
Length = 410
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 80/408 (19%), Positives = 129/408 (31%), Gaps = 56/408 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I AGRG GKT A V + + + + ++ + S LS+ P
Sbjct: 36 ILAGRGFGKTRTGAEWVREQVERHGRRRIAIVGRTAADVRDVMVEGESGILSISP----- 90
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE-- 199
PW+ V S + + YS + PD G + A DE
Sbjct: 91 ----------PWFRPVYEPSKRRLTWPNGAIATLYSADEPDLLRGPQHD---AAWADELA 137
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A P+ + + G + T P +L ++ N P R
Sbjct: 138 AWRRPEAWDNLMFGLRLGPDPRVVVTTTPRPVKL---IRDLLNDPTCVVTRGS-TYENAA 193
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ P+F E II+RY + + R E+ G+ + I+E RE ++
Sbjct: 194 NLAPAFLEQIISRY-EGTRLGRQELYGEVLDDVPGALWQRKRIDELRVREAP--ELVRVV 250
Query: 320 MGCDIA---EEGGDNT-VVVLRRG--PVIEHLFDWS-KTDLRTTNNKISGLVEKYRPDAI 372
+ D A EEG D T +VV RG L D S + + + D I
Sbjct: 251 VAIDPAVTSEEGSDETGIVVAGRGVDGDAYVLADRSCRMSPDGWARRAVKAYYDFDGDRI 310
Query: 373 I--IDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
+ ++ L +AV + R E + + + +
Sbjct: 311 VGEVNNGG-------DLVETVIRTVDPKVPYKAVRASRGKAVRAEPVAALYEQGKVHHVG 363
Query: 431 NHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
L L I +GA S D +D L++ E
Sbjct: 364 TFDHLEDQLC-------------QITPDGYQGAGSPDRADALVWALTE 398
>gi|238920988|ref|YP_002934503.1| hypothetical protein NT01EI_3118 [Edwardsiella ictaluri 93-146]
gi|238870557|gb|ACR70268.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 595
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 49/162 (30%), Gaps = 21/162 (12%)
Query: 246 DDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
W++ I+ +G D + + Y + QF S PL++++
Sbjct: 334 GQWRQIVTIEDAIRQGYDLFDIDQLRLEY--SPEEFANLFMCQFIDDTE-SVFPLSLLQG 390
Query: 305 AL-NREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL----RRGPVIEHLFD-- 347
+ + D Y P + +G D A G VV+ G +
Sbjct: 391 CMVDSWAVWDDYKPFALRPLGERSVWVGYDPALTGDSAGCVVVAPPVVEGGKFRVIEKHQ 450
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
W D I + +Y I ID G ++
Sbjct: 451 WHGMDFAAQAENIRKITGRYNVTYIGIDVTGIGHGVHQLVKQ 492
>gi|251783038|ref|YP_002997341.1| terminase large subunit [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391668|dbj|BAH82127.1| terminase large subunit [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 424
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 51/343 (14%), Positives = 101/343 (29%), Gaps = 50/343 (14%)
Query: 57 EFMEVVDAHCLNSVNNP-NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ +++ V NP++ A GRG GK++ A+++ L+ P ++ +C+
Sbjct: 4 DLADIIPIGFRPVVQATWNPKILNIACKGGRGSGKSSNIAFIISRLIIQYP-VNAVCIRK 62
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
++ L+ +++ ++ KW + + +P + I +
Sbjct: 63 TDNTLEQSVYEQI-KW----AISEQGLERYFKFNKSPLRITYIPRGNYIVFRG------- 110
Query: 176 YSEERPDTFVGHHNTYGMAII-----------NDEASGTPDVINLGILGFLTERNANRFW 224
+ P+ ++ I DE + + G LG +
Sbjct: 111 --AQNPERIKSLKDSRFPFAIGWIEELAEFKTEDEVKTITNSLLRGELG----DGLFYKF 164
Query: 225 IMTSNPRRLSGKF----YEIFNKPLDDWKRFQIDTR-TVEGIDPSFHEGIIARYGLDSDV 279
T NP + + YE +P + + T I F A
Sbjct: 165 FYTYNPPKRKQSWVNKKYESQFQPKNTF--VHASTYKDNPFIAKEFIAEAEATRERSERR 222
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR- 338
R E G+ +P + + + + + D D V
Sbjct: 223 YRWEYLGEAIGS---GVVPFDNLRFETIPDELYRSFDNIRNAVDFG-YATDPLAFVRWHY 278
Query: 339 -----GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
G K R N + + Y D I DA
Sbjct: 279 DKKHNGIYAIDELYGQKISNRQLANWLKD--KSYSNDEIFADA 319
>gi|262273310|ref|ZP_06051125.1| terminase [Grimontia hollisae CIP 101886]
gi|262222683|gb|EEY73993.1| terminase [Grimontia hollisae CIP 101886]
Length = 594
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 33/251 (13%), Positives = 65/251 (25%), Gaps = 52/251 (20%)
Query: 180 RPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSN-------P 230
T G H + DE P D +N T + + + T + P
Sbjct: 245 NSKTAQGFHGH----VYVDEYFWIPKFDELNKLASAMATHKTWRKTYFSTPSSKTHQAYP 300
Query: 231 RRLSGKF--------------YEIFNK-----PLDDWK-RFQIDTRTVEGIDPSFHEGII 270
+ +E F P W+ ++ G D + +
Sbjct: 301 FWTGDTWRGNANTREHVEFPTFEDFRNGGALCPDKHWRYVVTLEDAAAGGCDLFDIDELR 360
Query: 271 ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIM 320
Y + F + S + +E+ + + P + +
Sbjct: 361 DEYSKND--FANLFMCVFVDGNA-SVFTFSKLEKCMVDASKWKDFKPDAARPYANQEVWL 417
Query: 321 GCDIAEEGGDNT--VVVLRRG----PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D + + V+ + + W + + ++I +Y I I
Sbjct: 418 GYDPSRTRDNACLVVIAPPQTHAEVFRVLEKHYWKGLNFQYQASQIDEAFHRYHVTYIGI 477
Query: 375 DANNTGARTCD 385
D G D
Sbjct: 478 DTTGVGYGVWD 488
>gi|282547289|gb|ADA82346.1| putative terminase [Escherichia phage K1ind1]
Length = 416
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 65/413 (15%), Positives = 117/413 (28%), Gaps = 63/413 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
G G GKT + +L M PG + + ++ + + + +
Sbjct: 24 GGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYP------TFEEAANLLGL 77
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L D + + +CR S + P + VG A + DE
Sbjct: 78 DVLVKS-----GDKEVVVTCGKTVLGTVICR--SMDNPGSIVGF---KIAAAVVDELDVL 127
Query: 204 ----PDVINLGILG--FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT-R 256
++ I+ L +T+ P + + P + Q T
Sbjct: 128 SREKAELAWNKIVARMRLVIPGVTNHISVTTTPEGFKFVYAKFKENPTPSYSMVQASTHE 187
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-----EPC 311
+ P + + Y + + + G+F S + A +R +
Sbjct: 188 NARFLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGS------VYYAYDRRKHRSKEV 239
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
P L +G D + V V R+ D T I+ K +
Sbjct: 240 IQPGDTLYIGQDFNVTKNASAVYVQRKDGWHAVAELKGLFDTPDTVRVITEKW-KSQGHR 298
Query: 372 III--DANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
I++ DA+ +T L+ G+ V D N
Sbjct: 299 IVVYPDASGKNRKTNSASISDIALLQQAGFDVRAKSANPPVKDRVLAVN----------T 348
Query: 423 WLEFASLINHSGLIQNL-KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
LE L + L + K+L+ + G E + +D L Y
Sbjct: 349 ALEKGKLWVNDHLCPEIAKTLEQQAYDDNG----EPAKDGIID--HMADALGY 395
>gi|221316874|ref|YP_002527821.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|226246930|ref|YP_002776267.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
gi|221237339|gb|ACM10180.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|226201508|gb|ACO38105.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
Length = 450
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + ++ +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNVETFKTYNFTTYDNVFLSKGFIETQEKLY-KDIPAYKARVLLGEWLASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI E+ + P I D A GGDNT + +
Sbjct: 265 IFTQINITEDYMFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|169796738|ref|YP_001714531.1| putative phage terminase [Acinetobacter baumannii AYE]
gi|169149665|emb|CAM87555.1| conserved hypothetical protein; putative phage terminase
[Acinetobacter baumannii AYE]
Length = 437
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 58/349 (16%), Positives = 99/349 (28%), Gaps = 55/349 (15%)
Query: 81 AISAGRGIGKTTLNAWLV---LWLMSTRPGISVIC--LANSETQLKTTLWAEVSKWLSLL 135
A AG G GKT + + W V A + Q++ + +
Sbjct: 31 AFVAGFGSGKTWVGCSSLCNKAW-----EFPKVPLGYFAPTYPQIRDIFFPTI-----EE 80
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
W + + + Y T S E+P T VG + +
Sbjct: 81 VAFDWGLKTKVY--------ETNKEVDIYYGRQYRTTIICRSMEKPATIVGFKIGHAL-- 130
Query: 196 INDE----ASGTPDVINLGILGFLTERNANRF-WIMTSNPRRLSGKFYEIFNKP------ 244
DE A I+ + + A+ I + YE F K
Sbjct: 131 -IDELDVMAKVKAQQAWRKIIARMRYKQASLLNGIDVATTPEGFKFTYEQFVKEANKSEA 189
Query: 245 -LDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ Q T E + + + Y + + GQF + P +
Sbjct: 190 KRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFD 246
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
+ + PL++G D V V+R G L + +R T
Sbjct: 247 RVLNHTDEEIKQGEPLLIGMDFNVLKMAAVVYVIREG-KPRALDELVG--VRDTPTMCYL 303
Query: 363 LVEKYRPDAIIIDANNTGARTCDY---------LEMLGYHVYRVLGQKR 402
+ E++ I + + +G T L+ G+ V V G
Sbjct: 304 IKERFPDHDITVIPDASGQATSSKGFSESDHAILKKNGFKV-EVNGVNP 351
>gi|323137496|ref|ZP_08072573.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC
49242]
gi|322397122|gb|EFX99646.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC
49242]
Length = 323
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 58/284 (20%), Positives = 96/284 (33%), Gaps = 41/284 (14%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKG----AISAGRGIGKTTLNAWLVLWLMSTRPG------- 107
M +A SV + +P + A+ GR GK ++ + +V W + G
Sbjct: 38 MTEAEADFFRSVADRDPPSRRARELWAV-CGRRAGKDSIASAIVTWSAAMFDGADRLRPG 96
Query: 108 --ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
+CLA + Q + L ++ E++ L D L S G+D
Sbjct: 97 ERALCLCLACDKDQARIVL---------SYVRAYFAELEPLRAMVTRETKDGLELSNGVD 147
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-VINLGILGFLTERNANRFW 224
R V +A DE S +PD + + +
Sbjct: 148 IYVGVNDFRAVRGRTILCAV----LDEIAYWRDENSASPDLELYRALKPGMATL-PEAML 202
Query: 225 IMTSNPRRLSGKFYEIFN----KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
I S+P R +G + + D +D + + +A D
Sbjct: 203 IGISSPYRRAGLLHAKHRQAYGRDGDTLVIRAPSAVMNPTLDQAEIDQAMAE---DPAAA 259
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP----YAPLIM 320
R E +F + DI F+ L++IE A++ P YAP IM
Sbjct: 260 RAEWLAEF-RDDISGFLGLDLIEAAVDPTIVTRPPRGCYAPWIM 302
>gi|145639505|ref|ZP_01795109.1| putative phage gene [Haemophilus influenzae PittII]
gi|145271296|gb|EDK11209.1| putative phage gene [Haemophilus influenzae PittII]
Length = 629
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 25/180 (13%)
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---------REPCPDPY 315
E + RY + F +++ ++ + P
Sbjct: 389 NIEKLKQRYSKY--AFNQLYMCVWIDDADSIFTVHQLLKCGVDISKWKDFNPKADRPFGD 446
Query: 316 APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ G D A G + V++ + + W+ N+I L EKY
Sbjct: 447 REVWGGFDPAHSGDGASFVIIAPPALPSEKYRVLARYQWNGLSYVYQANQIRALYEKYNM 506
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
I IDA G + ++ ++ A + + +T + +K+ D +E +
Sbjct: 507 TYIGIDATGVGYGVYELVKE--------FARRAATAIIYNPESKTGMVLKVHDLVEHGQI 558
>gi|209694587|ref|YP_002262515.1| terminase, ATPase subunit [Aliivibrio salmonicida LFI1238]
gi|208008538|emb|CAQ78711.1| terminase, ATPase subunit [Aliivibrio salmonicida LFI1238]
Length = 590
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 54/179 (30%), Gaps = 19/179 (10%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----IP 298
W+ I+ G D + + Y +D F + F +
Sbjct: 330 DDKQWRYVVTIEDAANGGCDLFDIDELREEYSVDD--FNNLFMCMFVDGSLSVFKFSDLE 387
Query: 299 LNIIEEA-----LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR------RGPVIEHLFD 347
+++ A + P + + +G D + + +VV+ +
Sbjct: 388 KGMVDAAHWQDFKPKNKQPFEHREVWLGYDPSRTRDNACLVVVAPPAVVVEKFRVLEKHY 447
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQKRAVD 405
W + + ++I + ++Y+ I +D G D + + + + +
Sbjct: 448 WKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIGGGVWDLISKKYPREAHAIHYSNENKN 506
>gi|300922774|ref|ZP_07138861.1| conserved domain protein [Escherichia coli MS 182-1]
gi|300420878|gb|EFK04189.1| conserved domain protein [Escherichia coli MS 182-1]
Length = 199
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 49/177 (27%), Gaps = 55/177 (31%)
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLE 407
D+ + + + + D + D + GA T + G + D +
Sbjct: 2 DINEGADWATSMAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDED 61
Query: 408 F-----------------------CRNRRTELHVKMADWLEFA---------SLINH--- 432
RN+R + + +AD L + +
Sbjct: 62 APYQAGAWADEVVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVAHGEYADPDDMLS 121
Query: 433 -----------SGLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMY 474
L L ++ N G+L +E K+ G S + +D LM
Sbjct: 122 FDKEAIGEKMLEKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMM 177
>gi|284008602|emb|CBA75192.1| phage terminase protein [Arsenophonus nasoniae]
Length = 598
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 18/162 (11%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF------ 296
P W+ ++ G + + + + RY + D ++ F + F
Sbjct: 336 PDGQWRYVITLEDAIKGGFNLASIDKLRQRY--NPDTFKMLYMCIFIEHGASVFKYDTLQ 393
Query: 297 ---IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR------RGPVIEHLFD 347
+ +N+ E+ + P P + G D A G +T V++ I F
Sbjct: 394 KCGVDVNLWEDHNPKAPRPFGEREVWGGYDPARSGDTSTFVIVAPPMMAPEVFRILATFY 453
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
W R I L +KYR I ID G + ++
Sbjct: 454 WQGFSWRHQAKLIEDLTKKYRFTHIGIDTTGIGQSVYEMVQD 495
>gi|326536310|ref|YP_004300751.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage 133]
gi|299483391|gb|ADJ19485.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage 133]
Length = 606
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 51/328 (15%), Positives = 94/328 (28%), Gaps = 51/328 (15%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT A + + SV LA+ + + L+ L
Sbjct: 161 GKTAAVAIFLAHYVCFNESKSVGILAHKGSMSEEVLFR--------TKQAIELLPDFLQP 212
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DV 206
W + G ++ PD G I DE + D
Sbjct: 213 GIVEWNKRSIELDNGSSIGAFA--------SSPDAVRG---NSFSLIYIDETAFVQNWDD 261
Query: 207 INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF------NKPLDDWKRFQIDTRT-VE 259
L I ++ + IMT+ P ++ FY+++ ++ + + +
Sbjct: 262 CWLAIQPVISS-GRHSKIIMTTTPNGMN-HFYDLWQGAINGTSGFRPYEATWVSVKDRLY 319
Query: 260 GIDPSFHEGII---ARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+F +G G S E G F ++ I + +E D +
Sbjct: 320 NEADTFDDGWEFSARAIGSSSIEQFLQEHLGNF-AGGSNTLIDGTKLAVLFGQERIADQH 378
Query: 316 APL-----------IMGCDIAEE-GGDNTVVVLRRGPVIE----HLFDWSKTDLRTTNNK 359
+ I D AE G D + + + + +K +
Sbjct: 379 EFIEFKPPVAGRKYIATLDSAEGRGQDYHALHIIDVTDEQWEQAGVLHSNKISHLILADI 438
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYL 387
I + +Y + I+ N+TG L
Sbjct: 439 IFLYLTRYNEAPVYIELNSTGVSIAKTL 466
>gi|289661923|ref|ZP_06483504.1| phage-related terminase [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 267
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-------NREPCPDPYAP- 317
+ + Y D + +F S PL +++ + ++ P P
Sbjct: 29 IDELREEY--SPDAFANLLMCEFVDDGA-SIFPLAMLQPCMVDSWVEWGQDYKPFAARPY 85
Query: 318 ----LIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D AE G +VVL + G L + D +I + +Y
Sbjct: 86 GDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAAEIERITRRY 145
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G+ ++
Sbjct: 146 WVTYIGIDTTGMGSGVAQLVKQ 167
>gi|188577619|ref|YP_001914548.1| phage terminase, ATPase subunit [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188522071|gb|ACD60016.1| phage terminase, ATPase subunit [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 533
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR------------EPCPD 313
+ + Y D + F S PL +++ + P
Sbjct: 295 IDELREEY--SPDAFANLLMCDFVDDGA-SIFPLAMLQPCMVDSWVEWGQDYKPFAVRPY 351
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D AE G +VVL + G L + D +I + +Y
Sbjct: 352 GDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAAEIERITRRY 411
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G+ ++
Sbjct: 412 WVTYIGIDTTGMGSGVAQLVKQ 433
>gi|325926090|ref|ZP_08187451.1| hypothetical protein XPE_1415 [Xanthomonas perforans 91-118]
gi|325928218|ref|ZP_08189424.1| hypothetical protein XPE_3475 [Xanthomonas perforans 91-118]
gi|325541407|gb|EGD12943.1| hypothetical protein XPE_3475 [Xanthomonas perforans 91-118]
gi|325543435|gb|EGD14857.1| hypothetical protein XPE_1415 [Xanthomonas perforans 91-118]
Length = 587
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-------NREPCPDPYAP- 317
+ + Y D + F S PL +++ + +E P P
Sbjct: 349 IDELREEY--SPDAFANLLMCDFVDDGA-SIFPLAMLQPCMVDSWVEWGQEYKPFAARPY 405
Query: 318 ----LIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D AE G +VVL + G L + D +I + +Y
Sbjct: 406 GDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAAEIERITRRY 465
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G+ ++
Sbjct: 466 WVTYIGIDTTGMGSGVAQLVKQ 487
>gi|21232401|ref|NP_638318.1| phage-related terminase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|21114179|gb|AAM42242.1| phage-related terminase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
Length = 594
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-------NREPCPDPYAP- 317
+ + Y D + +F S PL +++ + ++ P P
Sbjct: 356 IDELREEY--SPDAFANLLMCEFVDDGA-SIFPLAMLQPCMVDSWVEWGQDYKPFAARPY 412
Query: 318 ----LIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D AE G +VVL + G L + D +I + +Y
Sbjct: 413 GDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAAEIERITRRY 472
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G+ ++
Sbjct: 473 WVTYIGIDTTGMGSGVAQLVKQ 494
>gi|254183934|ref|ZP_04890525.1| putative terminase, ATPase subunit [Burkholderia pseudomallei 1655]
gi|184214466|gb|EDU11509.1| putative terminase, ATPase subunit [Burkholderia pseudomallei 1655]
Length = 589
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + QF + S L+ ++ + P
Sbjct: 350 IDELRREYSAEE--FANLLMCQFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 406
Query: 314 PYAPLIMGCDIAEEGGDNTVVV-----LRRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV + G + + D I + ++Y
Sbjct: 407 GYREVWVGYDPALTGDSAGLVVVAPPRIDDGAFRVLERHQFRGNDFEEQAAAIEAITQRY 466
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 467 NVGYIAIDTTGMGQGVYQLVRK 488
>gi|160876026|ref|YP_001555342.1| hypothetical protein Sbal195_2916 [Shewanella baltica OS195]
gi|160861548|gb|ABX50082.1| protein of unknown function DUF264 [Shewanella baltica OS195]
Length = 589
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 52/343 (15%), Positives = 107/343 (31%), Gaps = 42/343 (12%)
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNA 220
+ Y + + + + + H + I+ +S T D G L A
Sbjct: 249 NLYLDEYFWIHKFQEFRKVASGMAIHAKWRQTYISTPSSITHDAYPFWTGTLFNRGRPKA 308
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDV 279
+R I S+ +G+ W++ +D +G + + + Y D
Sbjct: 309 DRIEIDVSHSALANGR-----RCEDGQWRQVVTVDDAIRKGCNLFDPDTLHLEY--SPDE 361
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNR-----------EPCPDPYAPLIMGCDIAEEG 328
+ +F D S P+ +++ + P P + + +G D + G
Sbjct: 362 YSNLLMCEFID-DTMSVFPMVMMQRCMVDSWEVWTDYKPFAPRPLAHREVWIGYDPNKGG 420
Query: 329 GDNTVVVLRR------GPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
++ + G + W+ D I + KY I ID G
Sbjct: 421 KGDSAGCIVICPPAVPGGKFRVIEKHRWNGMDFEAQAKAIQDICNKYNVTFIGIDTTGLG 480
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQ 437
++ V L ++++ +K D + L +G L Q
Sbjct: 481 EAVYQLVKKFFPQVTPFLYNPV---------LKSQMVIKAYDVISKGRLEYDAGWTDLAQ 531
Query: 438 NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
S++ + + ++ ES R + D + M+ P
Sbjct: 532 AFMSIRKTLTASGKQVTYESARSEEISHADIAWAAMHALYNEP 574
>gi|332288320|ref|YP_004419172.1| terminase-like family protein [Gallibacterium anatis UMN179]
gi|330431216|gb|AEC16275.1| terminase-like family protein [Gallibacterium anatis UMN179]
Length = 590
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 72/248 (29%), Gaps = 27/248 (10%)
Query: 244 PLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF--IPLN 300
P W++ I +G + + + Y ++ QF + F I L
Sbjct: 330 PDGQWRQIVTIYDAMAQGCNLFDVDALKLEYSVEE--FEQLFLCQFIDDNSSVFKFIDLQ 387
Query: 301 ---------IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR----RGPVIE--HL 345
+ P P+ +G D A G + V+ G H
Sbjct: 388 KCGVDSLEVWSDFN-PLAKRPFADNPVWIGYDPAHTGDRAALAVVAPPAVEGGKYRLLHY 446
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
D I ++ Y I ID G + Y + R L +
Sbjct: 447 KTVHGMDFEQQAGLIKDYLQIYNVQKITIDRTGLGEGVYQLVRKF-YPLTRGLTYNVDLK 505
Query: 406 LEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
E L++ LEF S +I + ++K ++ S R K A
Sbjct: 506 NEMVL---KTLNIIGKRRLEFDS--GDKEVINSFMTIKKQTTRTGQKITYISDRSKEASH 560
Query: 466 TDYSDGLM 473
D + +M
Sbjct: 561 GDIAWAIM 568
>gi|134288710|ref|YP_001111154.1| gp4, phage terminase, ATPase subunit [Burkholderia phage phiE12-2]
gi|134132095|gb|ABO60770.1| gp4, phage terminase, ATPase subunit [Burkholderia phage phiE12-2]
Length = 601
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + QF + S L+ ++ + P
Sbjct: 362 IDELRREYSAEE--FANLLMCQFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 418
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV+ G + + D I + ++Y
Sbjct: 419 GYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRY 478
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 479 NVGYIAIDTTGMGQGVYQLVRK 500
>gi|53722089|ref|YP_111074.1| bacteriophage terminase, ATPase subunit [Burkholderia pseudomallei
K96243]
gi|52212503|emb|CAH38529.1| putative bacteriophage terminase, ATPase subunit [Burkholderia
pseudomallei K96243]
Length = 601
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + QF + S L+ ++ + P
Sbjct: 362 IDELRREYSAEE--FANLLMCQFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 418
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV+ G + + D I + ++Y
Sbjct: 419 GYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRY 478
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 479 NVGYIAIDTTGMGQGVYQLVRK 500
>gi|72537721|ref|YP_293751.1| phage terminase ATPase subunit [Burkholderia phage phi52237]
gi|72398411|gb|AAZ72646.1| phage terminase ATPase subunit [Burkholderia phage phi52237]
Length = 601
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + QF + S L+ ++ + P
Sbjct: 362 IDELRREYSAEE--FANLLMCQFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 418
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV+ G + + D I + ++Y
Sbjct: 419 GYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRY 478
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 479 NVGYIAIDTTGMGQGVYQLVRK 500
>gi|53717814|ref|YP_106800.1| phage terminase, ATPase subunit [Burkholderia pseudomallei K96243]
gi|52208228|emb|CAH34159.1| phage terminase, ATPase subunit [Burkholderia pseudomallei K96243]
Length = 589
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + QF + S L+ ++ + P
Sbjct: 350 IDELRREYSAEE--FANLLMCQFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 406
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV+ G + + D I + ++Y
Sbjct: 407 GYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRY 466
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 467 NVGYIAIDTTGMGQGVYQLVRK 488
>gi|167916806|ref|ZP_02503897.1| bacteriophage terminase, ATPase subunit [Burkholderia pseudomallei
112]
Length = 589
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + QF + S L+ ++ + P
Sbjct: 350 IDELRREYSAEE--FANLLMCQFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 406
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV+ G + + D I + ++Y
Sbjct: 407 GYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRY 466
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 467 NVGYIAIDTTGMGQGVYQLVRK 488
>gi|167619947|ref|ZP_02388578.1| phage terminase, ATPase subunit [Burkholderia thailandensis Bt4]
Length = 589
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + QF + S L+ ++ + P
Sbjct: 350 IDELRREYSAEE--FANLLMCQFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 406
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV+ G + + D I + ++Y
Sbjct: 407 GYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRY 466
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 467 NVGYIAIDTTGMGQGVYQLVRK 488
>gi|167821684|ref|ZP_02453364.1| phage terminase, ATPase subunit [Burkholderia pseudomallei 91]
gi|254188172|ref|ZP_04894684.1| Putative ATPase subunit of terminase (gpP-like) [Burkholderia
pseudomallei Pasteur 52237]
gi|157935852|gb|EDO91522.1| Putative ATPase subunit of terminase (gpP-like) [Burkholderia
pseudomallei Pasteur 52237]
Length = 589
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + QF + S L+ ++ + P
Sbjct: 350 IDELRREYSAEE--FANLLMCQFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 406
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV+ G + + D I + ++Y
Sbjct: 407 GYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRY 466
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 467 NVGYIAIDTTGMGQGVYQLVRK 488
>gi|308389159|gb|ADO31479.1| Terminase, ATPase subunit [Neisseria meningitidis alpha710]
Length = 610
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 24/182 (13%)
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFD--WSKTDLRTTNNKISGLV 364
P P+ +G D + + +VV G L TD + I +
Sbjct: 428 RPAGNLPVWVGYDPSYTADASGLVVAVPPQNNGEPFYILETALIPGTDFESQAANIRKIT 487
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYR------VLGQKRAVDLEFCRNRRTELHV 418
E+Y I+IDAN GA D + V + G +N+R
Sbjct: 488 ERYNVSKIVIDANGIGAAVFDLVRKFYPPVIGMTYTPDIKGMMVLKTQNLLKNKR----- 542
Query: 419 KMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ ++ L S++ + + + ES R K A D + M F +
Sbjct: 543 ---IKWDAGNI----DLQMAFLSVRRSVTASGRNITYESVRSKTASHGDLAWAAMMLFYQ 595
Query: 479 NP 480
P
Sbjct: 596 EP 597
>gi|17981830|ref|NP_536821.1| terminase [Haemophilus phage HP2]
gi|13752203|gb|AAK37798.1| orf16 [Haemophilus phage HP2]
gi|309750513|gb|ADO80497.1| probable terminase, ATPase subunit [Haemophilus influenzae R2866]
Length = 607
Score = 48.6 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 25/180 (13%)
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---------REPCPDPY 315
E + RY + F +++ ++ + P
Sbjct: 367 NIEKLKQRYSKY--AFNQLYMCVWIDDADSIFTVHQLLKCGVDISKWKDFNPKADRPFGD 424
Query: 316 APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ G D A G + V++ + + W+ N+I L EKY
Sbjct: 425 REVWGGFDPAHSGDGASFVIIAPPALPSEKYRVLARYQWNGLSYVYQANQIRALYEKYNM 484
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
I IDA G + ++ ++ A + + +T + +K+ D +E +
Sbjct: 485 TYIGIDATGVGYGVYELVKE--------FARRAATAIIYNPESKTGMVLKVHDLVEHGQI 536
>gi|84623266|ref|YP_450638.1| phage-related terminase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|84367206|dbj|BAE68364.1| phage-related terminase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 594
Score = 48.6 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR------------EPCPD 313
+ + Y D + F S PL +++ + P
Sbjct: 356 IDELREEY--SPDAFANLLMCDFVDDGA-SIFPLAMLQPCMVDSWVEWGQDYKPFAVRPY 412
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D AE G +VVL + G L + D +I + +Y
Sbjct: 413 GDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAAEIERITRRY 472
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G+ ++
Sbjct: 473 WVTYIGIDTTGMGSGVAQLVKQ 494
>gi|163736656|ref|ZP_02144075.1| hypothetical protein RGBS107_16031 [Phaeobacter gallaeciensis
BS107]
gi|161390526|gb|EDQ14876.1| hypothetical protein RGBS107_16031 [Phaeobacter gallaeciensis
BS107]
Length = 430
Score = 48.6 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 65/416 (15%), Positives = 112/416 (26%), Gaps = 65/416 (15%)
Query: 82 ISAGRGIGKTTLNA-WLVLWLMSTRPGI-----SVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A W+ P + L + Q++ + S L+
Sbjct: 38 ILGGRGAGKTRAGAEWVRTLAEGATPLSAGRARRIALLGETYDQVRDVMVQGDSGLLACT 97
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P + + +S P+ G A
Sbjct: 98 PRD---------------RRPTWKATERRLIWPNGATAQAFSAHDPEALRGPQFD---AA 139
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + L + R + + R G ++ P +
Sbjct: 140 WADELAKWKRGQDSWDMLQFALRLGDDPR--VCVTTTPRNVGVLRDLLASPSTV-QTHAA 196
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA-LNREPCP 312
+ SF + RY S + R E+ G Q + + A + + P
Sbjct: 197 TEANRANLAASFIAEVRNRY-AGSRLGRQELDGILLQDVEGALWTNAGLVAAQIAKAPTL 255
Query: 313 DPYAPLIMGCDIAEEGG---DNTVVVLRRGPVIEHLFDW----------SKTDLRTTNNK 359
D +++ D A G D +V+ + DW T
Sbjct: 256 DR---VVVAVDPAVSAGKRSDACGIVVVGATLQGPPQDWCAYVLADCTVQGVGPLTWAQA 312
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
++Y D ++ + N GA L + V A+ + R E
Sbjct: 313 AIDARDRYGADRVVAEVNQGGALVESLLRQIDPLV-----PFTALHASRGKGARAEPVAA 367
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + + L L + G L G S D D L++
Sbjct: 368 LYEQGRVRHVPGLGALEDQLC-----QMTPRGYL--------GQGSPDRLDALVWA 410
>gi|224542959|ref|ZP_03683498.1| hypothetical protein CATMIT_02153 [Catenibacterium mitsuokai DSM
15897]
gi|224524097|gb|EEF93202.1| hypothetical protein CATMIT_02153 [Catenibacterium mitsuokai DSM
15897]
Length = 479
Score = 48.6 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 56/385 (14%), Positives = 114/385 (29%), Gaps = 32/385 (8%)
Query: 34 HFFPWGEK--GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
+ P+ +E ++ +E+ E+ + ++ K S R GK+
Sbjct: 14 YIIPYKSTLGNEAIELYNNTTRNAMEWQEIQMMDIMAVDDDGQWVHIKYGYSIPRRNGKS 73
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA 151
+ LW + G ++ A+ T W ++ + L +
Sbjct: 74 EILVMRELWGLL--HGEKILHTAH-RTTTSHASWEKLKQMLDENDYTEVKRADKEKTYEK 130
Query: 152 PWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGI 211
+ + I ++ +G +I DEA + +
Sbjct: 131 SYTATAQFGLETIKILDDGGGSASFRTRSSKGGLG---EGFDLLIVDEAQEYTEDQQSAL 187
Query: 212 LGFLTERNANRFWIMTSNP--------------------RRLSGKFYEIFNKPLDDWKRF 251
+T N +M P + + E + + D K
Sbjct: 188 QYVVTSSE-NPQTLMCGTPPTAVSSGTVFVNLRKECLSGGSDTSGWAEWSVEHMSDVKDR 246
Query: 252 QIDTRTVEGIDPSFHEGII-ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
I T + + E + A D ++ G + Q + S I N AL E
Sbjct: 247 DIWYETNPSLGQTLKERSVAAEDSSDEIDFNIQRFGLWLQYNQKSAISENE-WNALKVET 305
Query: 311 CPDPYAPLIMGCDIAEEGGDNT-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P+ PL +G +G + + + ++ + +R N I + K
Sbjct: 306 IPEFKGPLFVGIKYGHDGSNVSMSIAVKTKNDNILVDVIGCRPIRKGNGWIVDFLRKADI 365
Query: 370 DAIIIDANNTGARTCDYLEMLGYHV 394
A+ +D N + L+ G +
Sbjct: 366 AAVTVDGANGQQMLINELKEAGIKL 390
>gi|293608730|ref|ZP_06691033.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829303|gb|EFF87665.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 430
Score = 48.6 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 53/317 (16%), Positives = 88/317 (27%), Gaps = 45/317 (14%)
Query: 81 AISAGRGIGKTTLNAWLV---LWLMSTRPGISVIC--LANSETQLKTTLWAEVSKWLSLL 135
A AG G GKT + + W V A + Q++ + +
Sbjct: 24 AFVAGFGSGKTWVGCSSLCNKAW-----EFPKVPLGYFAPTYPQIRDIFFPTI-----EE 73
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
W + + + Y T S E+P T VG + +
Sbjct: 74 VAFDWGLKTKVY--------ETNKEVDIYYGRQYRTTIICRSMEKPATIVGFKIGHAL-- 123
Query: 196 INDE----ASGTPDVINLGILGFLTERNANRF-WIMTSNPRRLSGKFYEIFNKP------ 244
DE A I+ + + A I + YE F K
Sbjct: 124 -IDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKSEA 182
Query: 245 -LDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ Q T E + + + Y + + GQF + P +
Sbjct: 183 KRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFD 239
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKIS 361
+ + PL++G D V V+R G L + D T I+
Sbjct: 240 RVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVIREG-KPRALDELVGVRDTPTMCQLIN 298
Query: 362 GLVEKYRPDAIIIDANN 378
+ +I DA+
Sbjct: 299 ERFPDH-DITVIPDASG 314
>gi|260556008|ref|ZP_05828228.1| PBSX family phage terminase, large subunit [Acinetobacter baumannii
ATCC 19606]
gi|260410919|gb|EEX04217.1| PBSX family phage terminase, large subunit [Acinetobacter baumannii
ATCC 19606]
Length = 435
Score = 48.6 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 53/317 (16%), Positives = 88/317 (27%), Gaps = 45/317 (14%)
Query: 81 AISAGRGIGKTTLNAWLV---LWLMSTRPGISVIC--LANSETQLKTTLWAEVSKWLSLL 135
A AG G GKT + + W V A + Q++ + +
Sbjct: 29 AFVAGFGSGKTWVGCSSLCNKAW-----EFPKVPLGYFAPTYPQIRDIFFPTI-----EE 78
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
W + + + Y T S E+P T VG + +
Sbjct: 79 VAFDWGLKTKVY--------ETNKEVDIYYGRQYRTTIICRSMEKPATIVGFKIGHAL-- 128
Query: 196 INDE----ASGTPDVINLGILGFLTERNANRF-WIMTSNPRRLSGKFYEIFNKP------ 244
DE A I+ + + A I + YE F K
Sbjct: 129 -IDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKSEA 187
Query: 245 -LDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ Q T E + + + Y + + GQF + P +
Sbjct: 188 KRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFD 244
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKIS 361
+ + PL++G D V V+R G L + D T I+
Sbjct: 245 RVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVIREG-KPRALDELVGVRDTPTMCQLIN 303
Query: 362 GLVEKYRPDAIIIDANN 378
+ +I DA+
Sbjct: 304 ERFPDH-DITVIPDASG 319
>gi|94990333|ref|YP_598433.1| terminase large subunit [Streptococcus phage 10270.2]
gi|94994256|ref|YP_602354.1| Terminase large subunit [Streptococcus phage 10750.2]
gi|94543841|gb|ABF33889.1| Terminase large subunit [Streptococcus phage 10270.2]
gi|94547764|gb|ABF37810.1| Terminase large subunit [Streptococcus phage 10750.2]
Length = 432
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 41/290 (14%), Positives = 89/290 (30%), Gaps = 41/290 (14%)
Query: 57 EFMEVVDAHCLNSVNNP-NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ +++ V NP++ A GRG GK++ A+++ L+ P ++ +C+
Sbjct: 12 DLADIIPIGFKPVVQATWNPQILNIACKGGRGSGKSSNIAFIISRLIIQYP-VNAVCIRK 70
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
++ L+ +++ ++ KW + + +P + I +
Sbjct: 71 TDNTLEQSVYEQI-KW----AISEQGLERYFKFNKSPLRITYIPRGNYIVFRG------- 118
Query: 176 YSEERPDTFVGHHNTYGMAII-----------NDEASGTPDVINLGILGFLTERNANRFW 224
+ P+ ++ I DE + + G LG +
Sbjct: 119 --AQNPERIKSLKDSRFPFAIGWIEELAEFKTEDEVKTITNSLLRGELG----DGLFYKF 172
Query: 225 IMTSNPRRLSGKF----YEIFNKPLDDWKRFQIDTR-TVEGIDPSFHEGIIARYGLDSDV 279
T NP + + YE +P + + T I F A
Sbjct: 173 FYTYNPPKRKQSWVNKKYESQFQPSNTF--VHASTYKDNPFIAKEFIAEAEATRERSERR 230
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
R E G+ +P + + + + + G D
Sbjct: 231 YRWEYLGEAIGS---GVVPFDNLRFERITDEQVADFDNIRNGIDYGYATD 277
>gi|190572396|ref|YP_001970241.1| putative phage terminase, ATPase subunit (gpp) [Stenotrophomonas
maltophilia K279a]
gi|190010318|emb|CAQ43926.1| putative phage terminase, ATPase subunit (gpp) [Stenotrophomonas
maltophilia K279a]
Length = 597
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 39/142 (27%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL------------NIIEEALNREPCPD 313
E + Y + + +F S PL +++ P
Sbjct: 360 IEELRRDYSAEE--FANLLMCEFVDDSA-SIFPLTMLQPCQVDSWVEWVDDFKPLAIRPY 416
Query: 314 PYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D AE G +VV L G L + D I + +Y
Sbjct: 417 GDRAVWIGYDPAETGDSAGIVVVAPPLVPGGKFRVLERHQFKGMDFAAQAAFIQQVTLRY 476
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I IDA G +
Sbjct: 477 WVTYIGIDATGMGTGVAQLVRQ 498
>gi|328552921|gb|AEB23413.1| putative helicase, ATP-dependent, intein-containing [Bacillus
amyloliquefaciens TA208]
Length = 1021
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 43/144 (29%), Gaps = 33/144 (22%)
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP----------YAPLIMGCDIAE--- 326
R + + I ++ + +A ++G D+A
Sbjct: 731 FRQNYLCDWIGASDGALINISKLIKARTITHPELSCPRDKNKNFLLHEYVIGVDVARSAA 790
Query: 327 EGGDNTVVV-----------LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY-------- 367
E + T +V +R+ V+ + + + + + + + Y
Sbjct: 791 ESNNKTAIVVLKIIRNSNNLIRQVQVVNIIEPPNGLSFKEQSIMVKRVFKNYGGNQDTSL 850
Query: 368 -RPDAIIIDANNTGARTCDYLEML 390
R A+I+D N G D L
Sbjct: 851 SRVKAVIVDGNGVGGGLIDRLLED 874
>gi|167900122|ref|ZP_02487523.1| Putative ATPase subunit of terminase (gpP-like) protein
[Burkholderia pseudomallei 7894]
Length = 589
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + F + S L ++ + P
Sbjct: 350 IDELRREYSAEE--FANLLMCHFIDDSL-SVFKLAELQRCMVDSWEEWADDFSPLLLRPF 406
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ + +G D A G +VV+ G L + D I + ++Y
Sbjct: 407 GHREVWVGYDPALTGDSAGLVVVAPPRVDGGAFRVLERHQFRGNDFEEQAAAIEAITQRY 466
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 467 NVGYIAIDTTGMGQGVYQLVRK 488
>gi|325921366|ref|ZP_08183223.1| hypothetical protein XGA_2215 [Xanthomonas gardneri ATCC 19865]
gi|325548124|gb|EGD19121.1| hypothetical protein XGA_2215 [Xanthomonas gardneri ATCC 19865]
Length = 594
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-------NREPCPDPYAP- 317
+ + Y D + +F S PL +++ + ++ P P
Sbjct: 356 IDELREEY--SPDAFANLLMCEFVDDGA-SIFPLAMLQPCMVDSWVEWGQDYKPFAARPY 412
Query: 318 ----LIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D AE G +VVL G L + D +I + +Y
Sbjct: 413 GDRAVWIGYDPAETGDTAGLVVLAPPQLPGGKFRLLERIQFRGMDFAKQAAEIERITRRY 472
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G+ ++
Sbjct: 473 WVTYIGIDTTGMGSGVAQLVKQ 494
>gi|239590013|ref|YP_002941860.1| gp2 [Mycobacterium phage Angel]
gi|238890545|gb|ACR77534.1| gp2 [Mycobacterium phage Angel]
Length = 478
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 56/372 (15%), Positives = 107/372 (28%), Gaps = 54/372 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISVIC 112
W + + + +++ ++ + R +GKT L +V L PG++VI
Sbjct: 36 WTFDRWQDGLGRLILALDGTGLYAADTSVISIPRQVGKTYLIGCIVFALALLTPGLTVIW 95
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ +T E + ++ GI + S +
Sbjct: 96 TAH-----RTKTAKE-------TFGSMKAMCATPLVNAHVRNVSDARGDEGIYLHNGSRI 143
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ G ++ DEA D ++ + N ++T P R
Sbjct: 144 LFGAR----ENGFGLGFAGVGILVLDEAQRLTDKAMDDLIPTMNTVE-NPLILLTGTPPR 198
Query: 233 LS-------------------GKFYEIFN-----KPLDDWKRFQIDTRTVEGIDPSFHEG 268
+ G Y F+ P D + + +
Sbjct: 199 PTDSGEVFTMLRQDALDGESEGTLYVEFSADEGAHPDDRAQLRKANPSYPHRTSERAIRR 258
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA----PLIMGCDI 324
+ +S E G + D + ++ A R A P G D+
Sbjct: 259 MRKNLTEES--FLREAFGIW-----DKVVHRPVVTAARWRRLESTGPAAGVKPNGFGVDM 311
Query: 325 AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY-RPDAIIIDANNTGART 383
+ + V G W+ D I+ ++ R ++ID+ + A
Sbjct: 312 SHSRMVSVNAVWLDGDQAHTEEVWAGDDTDAAVAWIADAWKRAGRRTVVVIDSESPAASL 371
Query: 384 CDYLEMLGYHVY 395
LE G +VY
Sbjct: 372 VVDLENAGVNVY 383
>gi|9628620|ref|NP_043485.1| hypothetical protein HP1p21 [Haemophilus phage HP1]
gi|1722793|sp|P51718|VPP_BPHP1 RecName: Full=Probable terminase, ATPase subunit; AltName:
Full=ORF16
gi|1046243|gb|AAB09201.1| orf16 [Haemophilus phage HP1]
Length = 607
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 25/180 (13%)
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI----IEEALNREPCPDPYAP--- 317
E + RY + F + ++ A ++ P P
Sbjct: 367 NIEKLKQRYSKY--AFNQLYMCIWIDDADSIFNVKQLLKCGVDIAKWKDFNPKADRPFGD 424
Query: 318 --LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ G D A G + V++ + + W N+I L EKY
Sbjct: 425 REVWGGFDPAHSGDGASFVIIAPPALPGEKYRMLARYQWHGLSYVYQANQIRALYEKYNM 484
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
I IDA G + ++ ++ A + + +T + +K+ D +E +
Sbjct: 485 TYIGIDATGVGYGVYELVKE--------FARRAATAIIYNPESKTGMVLKVHDLVEHGQI 536
>gi|215484220|ref|YP_002326447.1| Terminase-like family protein [Acinetobacter baumannii AB307-0294]
gi|213985731|gb|ACJ56030.1| Terminase-like family protein [Acinetobacter baumannii AB307-0294]
Length = 413
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 53/317 (16%), Positives = 88/317 (27%), Gaps = 45/317 (14%)
Query: 81 AISAGRGIGKTTLNAWLV---LWLMSTRPGISVIC--LANSETQLKTTLWAEVSKWLSLL 135
A AG G GKT + + W V A + Q++ + +
Sbjct: 7 AFVAGFGSGKTWVGCSSLCNKAW-----EFPKVPLGYFAPTYPQIRDIFFPTI-----EE 56
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
W + + + Y T S E+P T VG + +
Sbjct: 57 VAFDWGLKTKVY--------ETNKEVDIYYGRQYRTTIICRSMEKPATIVGFKIGHAL-- 106
Query: 196 INDE----ASGTPDVINLGILGFLTERNANRF-WIMTSNPRRLSGKFYEIFNKP------ 244
DE A I+ + + A I + YE F K
Sbjct: 107 -IDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKSEA 165
Query: 245 -LDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ Q T E + + + Y + + GQF + P +
Sbjct: 166 KRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFD 222
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKIS 361
+ + PL++G D V V+R G L + D T I+
Sbjct: 223 RVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVIREG-KPRALDELVGVRDTPTMCQLIN 281
Query: 362 GLVEKYRPDAIIIDANN 378
+ +I DA+
Sbjct: 282 ERFPDH-DITVIPDASG 297
>gi|184157353|ref|YP_001845692.1| putative phage terminase [Acinetobacter baumannii ACICU]
gi|301345227|ref|ZP_07225968.1| putative phage terminase [Acinetobacter baumannii AB056]
gi|301595737|ref|ZP_07240745.1| putative phage terminase [Acinetobacter baumannii AB059]
gi|332851175|ref|ZP_08433263.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6013150]
gi|332869110|ref|ZP_08438600.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6013113]
gi|332875310|ref|ZP_08443140.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6014059]
gi|183208947|gb|ACC56345.1| putative phage terminase [Acinetobacter baumannii ACICU]
gi|332730195|gb|EGJ61521.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6013150]
gi|332732895|gb|EGJ64103.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6013113]
gi|332736478|gb|EGJ67475.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6014059]
Length = 413
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 53/317 (16%), Positives = 88/317 (27%), Gaps = 45/317 (14%)
Query: 81 AISAGRGIGKTTLNAWLV---LWLMSTRPGISVIC--LANSETQLKTTLWAEVSKWLSLL 135
A AG G GKT + + W V A + Q++ + +
Sbjct: 7 AFVAGFGSGKTWVGCSSLCNKAW-----EFPKVPLGYFAPTYPQIRDIFFPTI-----EE 56
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
W + + + Y T S E+P T VG + +
Sbjct: 57 VAFDWGLKTKVY--------ETNKEVDIYYGRQYRTTIICRSMEKPATIVGFKIGHAL-- 106
Query: 196 INDE----ASGTPDVINLGILGFLTERNANRF-WIMTSNPRRLSGKFYEIFNKP------ 244
DE A I+ + + A I + YE F K
Sbjct: 107 -IDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKSEA 165
Query: 245 -LDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ Q T E + + + Y + + GQF + P +
Sbjct: 166 KRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFD 222
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKIS 361
+ + PL++G D V V+R G L + D T I+
Sbjct: 223 RVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVIREG-KPRALDELVGVRDTPTMCQLIN 281
Query: 362 GLVEKYRPDAIIIDANN 378
+ +I DA+
Sbjct: 282 ERFPDH-DITVIPDASG 297
>gi|261494619|ref|ZP_05991100.1| terminase ATPase subunit [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261309731|gb|EEY10953.1| terminase ATPase subunit [Mannheimia haemolytica serotype A2 str.
OVINE]
Length = 612
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 18/132 (13%)
Query: 276 DSDVTRVEVCGQFPQQDIDSF----IPLNIIEEA--------LNREPCPDPYAPLIMGCD 323
D +F + F + +++ + P + +G D
Sbjct: 378 SPDEFEQLFMCEFIDDNQSVFKFTMMQRCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYD 437
Query: 324 IAEEGGDNTVVVL----RRGPVIEHLF--DWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+ G + +VV+ G L + D +I + KY + ID
Sbjct: 438 PSYTGDRSALVVIAPPKVDGGKFRLLEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTT 497
Query: 378 NTGARTCDYLEM 389
G + ++
Sbjct: 498 GLGVGVYEIVKK 509
>gi|213425656|ref|ZP_03358406.1| hypothetical protein SentesTyphi_08397 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
Length = 195
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Query: 311 CPDPYAPLIMGCDIAE--EGGDN--TVVVL---RRGPVIEHL--FDWSKTDLRTTNNKIS 361
P + + +G D A+ + GD+ VVV G L W D R + I
Sbjct: 8 RPFGWREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIK 67
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLE 388
L E+Y I ID+ G + ++
Sbjct: 68 KLTEQYNVTYIGIDSTGVGHGVYENVK 94
>gi|109392289|ref|YP_655519.1| gp2 [Mycobacterium phage Halo]
gi|189043089|ref|YP_001936030.1| hypothetical protein BPs1_2 [Mycobacterium phage BPs]
gi|91980539|gb|ABE67259.1| terminase [Mycobacterium phage Halo]
gi|171909204|gb|ACB58161.1| hypothetical protein BPs1_2 [Mycobacterium phage BPs]
gi|255927846|gb|ACU41466.1| gp2 [Mycobacterium phage Hope]
Length = 478
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 56/372 (15%), Positives = 107/372 (28%), Gaps = 54/372 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISVIC 112
W + + + +++ ++ + R +GKT L +V L PG++VI
Sbjct: 36 WTFDRWQDGLGRLILALDGTGLYAADTSVISIPRQVGKTYLIGCIVFALALLTPGLTVIW 95
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ +T E + ++ GI + S +
Sbjct: 96 TAH-----RTKTAKE-------TFGSMKAMCATPLVNAHVRNVSDARGDEGIYLHNGSRI 143
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ G ++ DEA D ++ + N ++T P R
Sbjct: 144 LFGAR----ENGFGLGFAGVGILVLDEAQRLTDKAMDDLIPTMNTVE-NPLILLTGTPPR 198
Query: 233 LS-------------------GKFYEIFN-----KPLDDWKRFQIDTRTVEGIDPSFHEG 268
+ G Y F+ P D + + +
Sbjct: 199 PTDSGEVFTMLRQDALDGESEGTLYVEFSADEGAHPDDRAQLRKANPSYPHRTSERAIRR 258
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA----PLIMGCDI 324
+ +S E G + D + ++ A R A P G D+
Sbjct: 259 MRKNLTEES--FLREAFGIW-----DKVVHRPVVTAARWRRLESTGPAAGVKPNGFGVDM 311
Query: 325 AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY-RPDAIIIDANNTGART 383
+ + V G W+ D I+ ++ R ++ID+ + A
Sbjct: 312 SHSRMVSVNAVWLDGDQAHTEEVWAGDDTDAAVAWIADAWKRAGRRTVVVIDSESPAASL 371
Query: 384 CDYLEMLGYHVY 395
LE G +VY
Sbjct: 372 VVDLENAGVNVY 383
>gi|261492632|ref|ZP_05989185.1| terminase ATPase subunit [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261311791|gb|EEY12941.1| terminase ATPase subunit [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 612
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 18/132 (13%)
Query: 276 DSDVTRVEVCGQFPQQDIDSF----IPLNIIEEA--------LNREPCPDPYAPLIMGCD 323
D +F + F + +++ + P + +G D
Sbjct: 378 SPDEFEQLFMCEFIDDNQSVFKFTMMQRCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYD 437
Query: 324 IAEEGGDNTVVVL----RRGPVIEHLF--DWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+ G + +VV+ G L + D +I + KY + ID
Sbjct: 438 PSYTGDRSALVVIAPPKVDGGKFRLLEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTT 497
Query: 378 NTGARTCDYLEM 389
G + ++
Sbjct: 498 GLGVGVYEIVKK 509
>gi|33601198|ref|NP_888758.1| putative phage terminase [Bordetella bronchiseptica RB50]
gi|33602480|ref|NP_890040.1| putative phage terminase [Bordetella bronchiseptica RB50]
gi|33575633|emb|CAE32711.1| putative phage terminase [Bordetella bronchiseptica RB50]
gi|33576919|emb|CAE33999.1| putative phage terminase [Bordetella bronchiseptica RB50]
Length = 425
Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 72/439 (16%), Positives = 127/439 (28%), Gaps = 62/439 (14%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKW 131
P F+ + AG G GKT + + P ++ A + Q++ + EV+
Sbjct: 15 PHKFRAFV-AGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHD 73
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + +CR S E+P VG
Sbjct: 74 WGLAAKINESNKEVHLFAGRKYRGT--------------VICR--SMEKPGDIVGFKIGK 117
Query: 192 GMAIINDEASGTPDV----INLGILGFL--TERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
G+ DE I+ L T +T+ P Y+ F K +
Sbjct: 118 GL---IDELDVMKTDKAALAWRKIIARLRHTAPGLINGVDVTTTPEG-FKFVYQQFVKQV 173
Query: 246 DD-------WKRFQIDTRTV-EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
+ + Q T + + + + A Y + + GQF S
Sbjct: 174 RERPDLVALYGLVQASTYENGKNLPEDYIPSLRASY--PPQLIAAYLRGQFTNLTSGSVY 231
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTN 357
P N + + +P+ L +G D TV V+R G + D
Sbjct: 232 P-NFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMA 290
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDY---------LEMLGYHVYRVLGQKRAVDLEF 408
+ + + + I + +G T L G+ V RV + AV
Sbjct: 291 RMLKERFKD-KGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTV-RVNSRNPAVKDRI 348
Query: 409 CRNRRTELHVK-MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD 467
L+ + WL +N ++L+ G E + G +
Sbjct: 349 NAVNGMLLNDEGARRWL-----VNTDRCPTLTEALEQQAYDKNG----EPDKSTGHDHPN 399
Query: 468 YSDGLMYTFAENPPRSDMD 486
+ G + M
Sbjct: 400 DAQGYFLVHRYPITPTGMS 418
>gi|289807324|ref|ZP_06537953.1| hypothetical protein Salmonellaentericaenterica_24067 [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 96
Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 443 KSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 43 PHRDFDRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 87
>gi|109289938|ref|YP_655470.1| terminase ATPase subunit [Mannheimia phage phiMHaA1]
gi|90110544|gb|ABD90554.1| terminase ATPase subunit [Mannheimia phage phiMhaA1-PHL101]
gi|90110594|gb|ABD90603.1| terminase ATPase subunit [Mannheimia phage phiMhaA1-BAA410]
Length = 605
Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 18/132 (13%)
Query: 276 DSDVTRVEVCGQFPQQDIDSF----IPLNIIEEA--------LNREPCPDPYAPLIMGCD 323
D +F + F + +++ + P + +G D
Sbjct: 371 SPDEFEQLFMCEFIDDNQSVFKFTMMQRCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYD 430
Query: 324 IAEEGGDNTVVVL----RRGPVIEHLF--DWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+ G + +VV+ G L + D +I + KY + ID
Sbjct: 431 PSYTGDRSALVVIAPPKVDGGKFRLLEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTT 490
Query: 378 NTGARTCDYLEM 389
G + ++
Sbjct: 491 GLGVGVYEIVKK 502
>gi|315268220|gb|ADT95073.1| terminase, ATPase subunit [Shewanella baltica OS678]
Length = 589
Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 52/343 (15%), Positives = 107/343 (31%), Gaps = 42/343 (12%)
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNA 220
+ Y + + + + + H + I+ +S T D G L A
Sbjct: 249 NLYLDEYFWIHKFQEFRKVASGMAIHAKWRQTYISTPSSITHDAYPFWTGKLFNRGRPKA 308
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDV 279
+R I S+ +G+ W++ +D +G + + + Y D
Sbjct: 309 DRIEIDVSHSALANGR-----RCEDGQWRQVVTVDDAIRKGCNLFDPDTLHLEY--SPDE 361
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNR-----------EPCPDPYAPLIMGCDIAEEG 328
+ +F D S P+ +++ + P P + + +G D + G
Sbjct: 362 YSNLLMCEFID-DTMSVFPMVMMQRCMVDSWEVWTDYKPFAPRPLAHREVWIGYDPNKGG 420
Query: 329 GDNTVVVLRR------GPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
++ + G + W+ D I + KY I ID G
Sbjct: 421 KGDSAGCIVICPPAVPGGKFRVIEKHRWNGMDFEAQAKAIQDICNKYNVTFIGIDTTGLG 480
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQ 437
++ V L ++++ +K D + L +G L Q
Sbjct: 481 EAVYQLVKKFFPQVTPFLYNPV---------LKSQMVIKAYDVISKGRLEYDAGWTDLAQ 531
Query: 438 NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
S++ + + ++ ES R + D + M+ P
Sbjct: 532 AFMSIRKTLTASGKQVTYESARSEEISHADIAWAAMHALYNEP 574
>gi|254360872|ref|ZP_04977019.1| bacteriophage terminase large subunit [Mannheimia haemolytica
PHL213]
gi|153092346|gb|EDN73415.1| bacteriophage terminase large subunit [Mannheimia haemolytica
PHL213]
Length = 600
Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 18/132 (13%)
Query: 276 DSDVTRVEVCGQFPQQDIDSF----IPLNIIEEA--------LNREPCPDPYAPLIMGCD 323
D +F + F + +++ + P + +G D
Sbjct: 366 SPDEFEQLFMCEFIDDNQSVFKFTMMQRCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYD 425
Query: 324 IAEEGGDNTVVVL----RRGPVIEHLF--DWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+ G + +VV+ G L + D +I + KY + ID
Sbjct: 426 PSYTGDRSALVVIAPPKVDGGKFRLLEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTT 485
Query: 378 NTGARTCDYLEM 389
G + ++
Sbjct: 486 GLGVGVYEIVKK 497
>gi|322412171|gb|EFY03079.1| phage terminase [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
Length = 471
Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 51/347 (14%), Positives = 111/347 (31%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + + A + + + GKT + + LW + G+ ++
Sbjct: 43 PWQENMLIPIMAIDEDGLWVHQKYGYAIPRRN----GKTEVVYIVELWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + + + + + A + + G + +
Sbjct: 97 TAHRISTSHA-SFEKVKKYLEMS---GYVDGEDFISNKAKGQERIEFKASGAVIQFRT-- 150
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT + + F +I DEA + +T+ + N IM P
Sbjct: 151 -RTSNGGLGEGFD--------LLIIDEAQEYTSEQESALKYTVTDSD-NPMTIMCGTPPT 200
Query: 233 L--SGKFYEIFNKP----------LDDWKRFQ------IDTRTVEGIDPSFH---EGIIA 271
+ +G +E + K +W + + + + FH I A
Sbjct: 201 IVSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEA 260
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D ++ G + + S I + L E P+ + L +G ++G +
Sbjct: 261 ELGEDEIDHNIQRLGYWSSFNQKSVISEKEWAK--LKVEQVPELKSKLFVGIKFGQDGNN 318
Query: 331 NT-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + R + +R I ++ ++ID
Sbjct: 319 VSLSIAARTSENKVFVEVIDCLSVRNGTQWIINFLKSADIAKVVIDG 365
>gi|194289059|ref|YP_002004966.1| bacteriophage p2 gpp capsid protein; terminase, atpase subunit
[Cupriavidus taiwanensis LMG 19424]
gi|193222894|emb|CAQ68899.1| bacteriophage P2 GPP capsid protein; Terminase, ATPase subunit
[Cupriavidus taiwanensis LMG 19424]
Length = 593
Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 21/137 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE-----------PCPDP 314
E + Y + F S PL+++ + P P
Sbjct: 355 LEQLRREY--SDADFENLLMCGFIDDTA-SVFPLSMLMRCMVDSWEVWEDFRHWSPRPLG 411
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRR-----GPVIEHLFD--WSKTDLRTTNNKISGLVEKY 367
+ +G D GGD+ +V+ G L + D + + E+Y
Sbjct: 412 NREVWVGYDPNGGGGDSAALVVVAPPLVPGGKFRVLEKHQFRGIDYEEQAAAVLKVCERY 471
Query: 368 RPDAIIIDANNTGARTC 384
I ID G
Sbjct: 472 NVTYIGIDRTGVGDAVY 488
>gi|154488071|ref|ZP_02029188.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis
L2-32]
gi|154083544|gb|EDN82589.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis
L2-32]
Length = 477
Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 59/376 (15%), Positives = 107/376 (28%), Gaps = 60/376 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISV 110
WQ + +V A + + + A+ + R GKT W+ + + PG+ +
Sbjct: 37 DPWQRQINRIVLAKSADGFWSA-----RNAVLSIPRQTGKTYDIGWVAIHRAARTPGMRI 91
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH---CSLGIDSK 167
+ A + S++ + + D H + G +
Sbjct: 92 VWTA---------------QHFSVIKDTFESLCAIVLRPEMSGLVDPDHGISLAAGKEEI 136
Query: 168 HYSTMCRT-YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ R + G ++ DEA D +L R N I
Sbjct: 137 RFRNGSRIFFRARERGALRGV--KKIALLVIDEAQHLSDSAMASMLPT-QNRAYNPQTIY 193
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDT---------RTVEGIDPSFHEGIIARY---- 273
P E F + D + + + R + +D Y
Sbjct: 194 MGTPPGPRDNG-EAFTRLRDKARAGRTHSTLYVEFAADRDADPLDREQWRKANPSYPAHT 252
Query: 274 ----------GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
L D R E G + + + I EEA P + G D
Sbjct: 253 SDESIANLWENLTGDDFRREALGIWDEHALSRAIDRRQWEEATIDARRP--GGVMSFGID 310
Query: 324 IAEEGGDNTV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK--YRPDAIIIDANN 378
+ + T+ + G L ++ T+ T L++K + A++ID +
Sbjct: 311 MNPQRTRLTIGACMRYDDGTAHIELAEYRDTNHDGT-MWAVNLIDKVWEQTAALVIDGQS 369
Query: 379 TGARTCDYLEMLGYHV 394
L G V
Sbjct: 370 PATALLPDLAEAGITV 385
>gi|264678567|ref|YP_003278474.1| hypothetical protein CtCNB1_2432 [Comamonas testosteroni CNB-2]
gi|262209080|gb|ACY33178.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 322
Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 19/133 (14%)
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR------------EPCPDPYAPLIMGC 322
DV QF D + PL++++ + P Y + +G
Sbjct: 86 KSEDVFNNLYMCQFVD-DALAVFPLSVLQRCMVDSWDAWRKDFKAFAQRPFGYKRVWVGY 144
Query: 323 DIAEEGGDNTVVVL----RRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
D + G +VVL + G L+ D I + + Y + + ID
Sbjct: 145 DPSLTGDKAALVVLAPPDKPGGKCRILYKVQLHGVDFEAQAAAIKKVCDSYSVEKMTIDI 204
Query: 377 NNTGARTCDYLEM 389
G +
Sbjct: 205 TGLGNGVYQLVRK 217
>gi|56808979|ref|ZP_00366686.1| COG1783: Phage terminase large subunit [Streptococcus pyogenes M49
591]
gi|71910836|ref|YP_282386.1| terminase large subunit [Streptococcus pyogenes MGAS5005]
gi|71853618|gb|AAZ51641.1| terminase large subunit [Streptococcus pyogenes MGAS5005]
Length = 424
Score = 48.2 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 37/287 (12%), Positives = 85/287 (29%), Gaps = 35/287 (12%)
Query: 57 EFMEVVDAHCLNSVNNP-NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ +++ V NP++ A GRG GK++ A+++ L+ P ++ +C+
Sbjct: 4 DLADIIPIGFKPVVQATWNPQILNIACKGGRGSGKSSNIAFIISRLIIQYP-VNAVCIRK 62
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQ--------SLSLHPAPWYSDVLHCSLGIDSK 167
++ L+ +++ ++ +S + +F+ + + +
Sbjct: 63 TDNTLEQSVYEQIKWAISEQGLERYFKFNKSPLRITYIPRGNYIVFRGAQNPERIKSLKD 122
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + DE + + G LG + T
Sbjct: 123 SRFPFAIGW----IEELAEFKTE-------DEVKTITNSLLRGELG----DGLFYKFFYT 167
Query: 228 SNPRRLSGKF----YEIFNKPLDDWKRFQIDTR-TVEGIDPSFHEGIIARYGLDSDVTRV 282
NP + + YE +P + + T I F A R
Sbjct: 168 YNPPKRKQSWVNKKYESQFQPSNTF--VHASTYKDNPFIAKEFIAEAEATRERSERRYRW 225
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
E G+ +P + + + + + G D
Sbjct: 226 EYLGEAIGS---GVVPFDNLRFERITDEQVADFDNIRNGIDYGYATD 269
>gi|225575978|ref|YP_002724813.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225576296|ref|YP_002725339.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547342|gb|ACN93326.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547454|gb|ACN93434.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 54/163 (33%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDID 294
F + +K ++ T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNTATFKTYKFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NII++ + P I D A GGDNT + +
Sbjct: 265 IFTQINIIQDYVFTSP--------IAYLDPAFSIGGDNTALCV 299
>gi|17546658|ref|NP_520060.1| terminase (ATPase subunit) related protein [Ralstonia solanacearum
GMI1000]
gi|17428957|emb|CAD15641.1| probable terminase (atpase subunit) related protein [Ralstonia
solanacearum GMI1000]
Length = 506
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 21/137 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-----------EPCPDP 314
+ + Y + F + S PL+++ + P P
Sbjct: 355 LDQLRLEYSE--PEFANLLMCAFIDDNA-SVFPLSMLMRGMVDSWEAWEDFRPFAPRPFG 411
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRR-----GPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
P+ +G D GGD+ +V+ G L + D I + E++
Sbjct: 412 NRPVWVGYDPNGGGGDSAALVVVAPPLVPGGKFRVLERHQFRGIDYEEQAGAIRRVCERF 471
Query: 368 RPDAIIIDANNTGARTC 384
+ ID G
Sbjct: 472 NVAYVGIDRTGIGDAVF 488
>gi|134288784|ref|YP_001111035.1| gp4, phage terminase, ATPase subunit [Burkholderia phage phiE202]
gi|134131997|gb|ABO60745.1| gp4, phage terminase, ATPase subunit [Burkholderia phage phiE202]
Length = 589
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 39/142 (27%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + F + S L+ ++ + P
Sbjct: 350 IDELRREYSAEE--FANLLMCHFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 406
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
+ + +G D A G +VV+ G + + D I + ++Y
Sbjct: 407 GHREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRY 466
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 467 NVGYIAIDTTGMGQGVYQLVRK 488
>gi|224593667|ref|YP_002641021.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|224554694|gb|ACN56072.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K ++ T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYKFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|323188196|gb|EFZ73489.1| terminase, ATPase subunit [Escherichia coli RN587/1]
Length = 594
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 49/162 (30%), Gaps = 21/162 (12%)
Query: 246 DDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
W++ ++ +G D E + + QF S PL++++
Sbjct: 333 GQWRQIVTVEDAINQGYDLFDLEQLRLE--NSPEEFANLFMCQFIDDTA-SVFPLSMLQG 389
Query: 305 AL-NREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL----RRGPVIEHLFD-- 347
+ + D Y P + +G D A G VV+ G +
Sbjct: 390 CMVDSWEVWDDYKPFALRPLGERSVWVGYDPALSGDSAGCVVVAPPVIEGGKFRVIEKHQ 449
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
W D I + E+Y I ID G ++
Sbjct: 450 WHGMDFAAQAENIRKITERYNVTYIGIDVTGIGHGVHQLVKQ 491
>gi|221067857|ref|ZP_03543962.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
KF-1]
gi|220712880|gb|EED68248.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
KF-1]
Length = 434
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 56/330 (16%), Positives = 112/330 (33%), Gaps = 39/330 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++L + ++RP V+C E+ K +
Sbjct: 39 GGRGGGKSWTVAAVLLVMAASRPL-RVLCT------------REIQK-SIKQSVHQLLKD 84
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHY-STMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
L+ ++ + GI+ + + ++++ + +F G + +EA G
Sbjct: 85 VIARLNLHAFFEVLETEVRGINGSLFLFSGLQSHTVDSIKSFEGCD-----IVWVEEAHG 139
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTRTVEGI 261
++ + + + + + NP + + Y+ F P D +I+ R
Sbjct: 140 VSKKSWDTLIPTIRKEGSEIWLTL--NPDMETDETYQRFIATPCPDTWVVEINWRDNPWF 197
Query: 262 DPSFHEGII-ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE---EALNREPCPDPYAP 317
E A+ + +D G+ + + + + R+ DP P
Sbjct: 198 PRVLDEERRKAKRTMLADDYAHIWEGKARRVAAGAIYRHEMESVYLDNRARDVPYDPTLP 257
Query: 318 LIMGCDIAEEGGDNTVVVLRRGP-----VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
+ D+ D + L + +I H+ D +T L K+ L ++ D +
Sbjct: 258 VHTVWDLGWN--DAMSIALVQRGPQDVRIIGHIEDSHRT-LDWYVAKLEKLPYRWGTDYL 314
Query: 373 IIDAN----NTGARTCDYLEMLGYHVYRVL 398
D TG T L LG V
Sbjct: 315 PHDGKTRNFQTGKSTEQLLRELGRRSVMVQ 344
>gi|254192775|ref|ZP_04899210.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
gi|254197102|ref|ZP_04903525.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
gi|169649529|gb|EDS82222.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
gi|169653844|gb|EDS86537.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
Length = 601
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + QF + S L+ ++ + P
Sbjct: 362 IDELRREYSAEE--FANLLMCQFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 418
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV+ G + + D I + ++Y
Sbjct: 419 GYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQATAIEAITQRY 478
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 479 NVGYIAIDTTGMGQGVYQLVRK 500
>gi|167839678|ref|ZP_02466362.1| phage terminase, ATPase subunit [Burkholderia thailandensis MSMB43]
Length = 589
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 21/138 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + F + S L+ ++ + P
Sbjct: 350 IDELRREYSAEE--FANLLMCHFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 406
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ + +G D A G +VV+ G L + D I + +Y
Sbjct: 407 GHREVWVGYDPALTGDSAGLVVVAPPRVDGGAFRVLERHQFRGNDFEEQAAAIEAITRRY 466
Query: 368 RPDAIIIDANNTGARTCD 385
I ID G
Sbjct: 467 NVGYIAIDTTGMGQGVYQ 484
>gi|82776058|ref|YP_402405.1| hypothetical protein SDY_0732 [Shigella dysenteriae Sd197]
gi|33323489|gb|AAQ07461.1| HI1410 hypothetical protein-like protein [Shigella flexneri]
gi|81240206|gb|ABB60916.1| hypothetical bacteriophage protein [Shigella dysenteriae Sd197]
Length = 97
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 443 KSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 44 PHRDFDRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 88
>gi|308071887|emb|CBW54808.1| putative DNA maturase B [Pantoea phage LIMElight]
Length = 614
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 67/461 (14%), Positives = 132/461 (28%), Gaps = 89/461 (19%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
R +P++ TE + + ++F F + G GF Q + +
Sbjct: 25 PRTIPSDKRTELAMM-------LAITFKEFRDFAY----VGMRFLGFELTDM-QADIADY 72
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ-- 119
+ K ++A RG K+TL A +W + V+ L+ E Q
Sbjct: 73 MQYG-----------PRKKMVAAQRGEAKSTLAALYSVWRLIQDQRCRVLILSGGEQQAS 121
Query: 120 -LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ T + + W P W + S + + +HC L K S C +
Sbjct: 122 EVATLVIRLIETW----PLLCWLKADSTRGDRTSYTAYDVHCDLKPLDKSPSVACIGVTA 177
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF--------------W 224
+ G PD I G
Sbjct: 178 ----SLQGKRADLL----------IPDDIETTKNGMTQTEREKLLTVSKDFAAICTHGDT 223
Query: 225 IMTSNPRRLSGKFYEIFNKPL------DDWKRFQIDTRTVEGIDPSFHEGI-----IARY 273
+ P+ + + + +++ R E + P HE I + Y
Sbjct: 224 LYLGTPQTKDSIYKTLPARGFEVRVWPGRIPSLEMEERYGETLAPYIHELIAAGYSRSGY 283
Query: 274 GLDSDVTRVEVCGQFPQQD----IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
G+D + + G++ + D F P + + D I D+ GG
Sbjct: 284 GVDGTLGQSTDTGRYSEDDLIEKELDFGPEGFQLQYMLDTSLLDAMRTKIKLSDLLIHGG 343
Query: 330 DNTV-----VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN------ 378
D + + ++ + + + +Y+ ++ID
Sbjct: 344 DTDTAPDRFMYAADRRNLVEEYEPIRGEKLYYPAGTGSEMLQYKHKLMVIDPAGCGGDEI 403
Query: 379 ---TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
G Y+ + + V G +++ + E+
Sbjct: 404 SYAAGGAVSSYIHL--FSVGGFQGGVSTENIDKVIDLAIEM 442
>gi|254197041|ref|ZP_04903465.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
gi|169653784|gb|EDS86477.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
Length = 576
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + QF + S L+ ++ + P
Sbjct: 337 IDELRREYSAEE--FANLLMCQFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 393
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV+ G + + D I + ++Y
Sbjct: 394 GYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQATAIEAITQRY 453
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 454 NVGYIAIDTTGMGQGVYQLVRK 475
>gi|237720954|ref|ZP_04551435.1| phage terminase large subunit [Bacteroides sp. 2_2_4]
gi|229449789|gb|EEO55580.1| phage terminase large subunit [Bacteroides sp. 2_2_4]
Length = 450
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 40/242 (16%)
Query: 262 DPSFHEGIIARYGLDSDVTRVE-VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
DP++ ++ + SD R + G + + I EAL R +
Sbjct: 201 DPTYLANLVNQ----SDEQRARDLDGNWKYKAAGDDIIKLTHMEALYRNSMQIGDGIRRV 256
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIIIDANN 378
CD A EGGD+ V+ L G I +F K D + T + + ++E++ R + D N
Sbjct: 257 SCDAAFEGGDSLVMWLWEGWHIRDIFV-CKLDSKKTVDTVKAMLEEWHVREECFTYDLNG 315
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEF----CRNRRTELHVKMADWLEFASLINHSG 434
G G+ + + E N +++ A + +
Sbjct: 316 LGQI------FKGFFPNAIPFNNKEAVEEKFKYIYANLKSQAAYLFAQKIINREISIEPT 369
Query: 435 LIQNLKSLKSFIVPNTGELA-IESKRVKG---------------------AKSTDYSDGL 472
L++ S K F ++ E K ++ S D+ + L
Sbjct: 370 LLERKFSGKGFEKVPLRQILDKERKAIRKDEDSEEKGWTIIKKIIMKKLVGHSPDFIEAL 429
Query: 473 MY 474
+
Sbjct: 430 LM 431
>gi|226941496|ref|YP_002796570.1| Terminase [Laribacter hongkongensis HLHK9]
gi|226716423|gb|ACO75561.1| Terminase [Laribacter hongkongensis HLHK9]
Length = 578
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 18/129 (13%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIM 320
R D R +F S PL+++ + P + + +
Sbjct: 345 RLENSPDEFRQLFECEFIDDG-KSVFPLSMLHRCMVDSMEAWPDYNPFTLRPLGHREVWI 403
Query: 321 GCDIAEEGGDNTVVVLR-----RGP-VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D +E G +VV+ GP + + D I ++YR I I
Sbjct: 404 GYDPSESGDSAAMVVVAPPAVPDGPFRLLECRQFRGLDYSAQAQAIKEATDRYRVTHIAI 463
Query: 375 DANNTGART 383
D G+
Sbjct: 464 DRTGLGSAV 472
>gi|58581337|ref|YP_200353.1| phage-related terminase [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58425931|gb|AAW74968.1| phage-related terminase [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 594
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR------------EPCPD 313
+ + Y D + F S L +++ + P
Sbjct: 356 IDELREEY--SPDAFANLLMCDFVDDGA-SIFSLAMLQPCMVDSWVEWGQDYKPFAVRPY 412
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D AE G +VVL + G L + D +I + +Y
Sbjct: 413 GDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAAEIERITRRY 472
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G+ ++
Sbjct: 473 WVTYIGIDTTGMGSGVAQLVKQ 494
>gi|154247555|ref|YP_001418513.1| hypothetical protein Xaut_3628 [Xanthobacter autotrophicus Py2]
gi|154161640|gb|ABS68856.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
Length = 690
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 48/322 (14%), Positives = 96/322 (29%), Gaps = 63/322 (19%)
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNANRF--WIMTSNPRRLSGKFYEIFNKPLDDW 248
+ + +E S P L L + + NP Y F + D
Sbjct: 380 HNCTLYFNECSQIPYSSILVARTRLAQVVPGLMQRALYDLNPAGTGHWTYREFIEGRDPI 439
Query: 249 KRFQIDTRTV------------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + + P F + A G + + +
Sbjct: 440 SGAPLSAPDNFQHMFLNPGDNAKNLSPEFLRSLEALPEKQRRRF---FDGMYVAEIDGAL 496
Query: 297 IPLNIIEEALNREPCPDPYA--PLIMGCD------------------IAEEGGDNTVVVL 336
L++IE + P + +++G D +A D T V+L
Sbjct: 497 WTLDLIERCRSEPIAPGDHRLRRIVIGVDPSGAANKEDARSDEIGIVVAGMMDDGTAVIL 556
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
G V + W K ++GL K+ D +I + N G +++ +
Sbjct: 557 EDGTVRDGPSGWGKV--------VAGLYHKWGADRVIAERN-YGGAMVEFVILTADKSIP 607
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIE 456
V + ++ R E ++ E + H+G ++ + +G +
Sbjct: 608 V----SVITASRGKHIRAE---PVSALYEQGK-VRHAGRFPEMED-QFTNFSTSGYM--- 655
Query: 457 SKRVKGAKSTDYSDGLMYTFAE 478
G +S D +D ++ E
Sbjct: 656 -----GDRSPDRADAAVWALTE 672
>gi|226939350|ref|YP_002794423.1| Terminase [Laribacter hongkongensis HLHK9]
gi|226714276|gb|ACO73414.1| Terminase [Laribacter hongkongensis HLHK9]
Length = 578
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 18/129 (13%)
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIM 320
R D R +F S PL+++ + P + + +
Sbjct: 345 RLENSPDEFRQLFECEFIDDG-KSVFPLSMLHRCMVDSMEAWPDYNPFTLRPLGHREVWI 403
Query: 321 GCDIAEEGGDNTVVVLR-----RGP-VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D +E G +VV+ GP + + D I E+YR I I
Sbjct: 404 GYDPSESGDSAAMVVVAPPAVPDGPFRLLECRQFRGLDYSAQAQAIKEATERYRVTHIAI 463
Query: 375 DANNTGART 383
D G+
Sbjct: 464 DRTGLGSAV 472
>gi|213427183|ref|ZP_03359933.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
Length = 195
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 311 CPDPYAPLIMGCDIAE--EGGDNT---VVVL--RRGPVIEHL--FDWSKTDLRTTNNKIS 361
P + + +G D A+ + GD+ V+ G L W D R + I
Sbjct: 8 RPFGWREVWIGYDPAKGTQNGDSAGCVVIAPPTVPGGKFRILERHQWRGMDFRAQADAIK 67
Query: 362 GLVEKYRPDAIIIDANNTGARTC 384
L ++Y I ID+ G
Sbjct: 68 KLTQQYNVTYIGIDSTGVGHGVY 90
>gi|251778523|ref|ZP_04821443.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082838|gb|EES48728.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 448
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 10/190 (5%)
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI-FNKPLDDWKRFQI 253
I+ +E + + L +N + NP S YE+ F D+ +
Sbjct: 142 IVVEECTEIDKQEFSQLGLRLRSKNGYNQIHVMFNPISKSNWVYEMWFQNGYDESDTMVL 201
Query: 254 DT--RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI--IEEALNRE 309
T + + + + +I D R+ G+F +D I N ++ +
Sbjct: 202 KTTYKDNKFLPYDYINALIKMKETDPVYYRIYALGEF--ASLDKLIYTNWEELDFDWRKL 259
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV---IEHLFDWSKTDLRTTNNKISGLVEK 366
PYA G D + + + V I ++ + L + +
Sbjct: 260 MQQRPYAKACFGLDFGYVNDPSAFIAMIVDEVNKEIYIFDEFYEKGLLNDALALKIVKRG 319
Query: 367 YRPDAIIIDA 376
Y + I D+
Sbjct: 320 YGKEIIFADS 329
>gi|163746673|ref|ZP_02154030.1| hypothetical protein OIHEL45_14759 [Oceanibulbus indolifex HEL-45]
gi|161379787|gb|EDQ04199.1| hypothetical protein OIHEL45_14759 [Oceanibulbus indolifex HEL-45]
Length = 414
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 59/423 (13%), Positives = 109/423 (25%), Gaps = 73/423 (17%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGIS---------VICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ S G V + + Q++ +
Sbjct: 22 IMGGRGAGKTRAGA---EWVRSKVEGSRPLDPGECSRVALVGETIEQVREVM-------- 70
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
F + P + + ++ P+ G
Sbjct: 71 -------IFGDSGILACSPPDRRPDWEATRKRLVWPNGAIATVHTAHDPEGLRGPQFD-- 121
Query: 193 MAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + L +T+ PR + + +
Sbjct: 122 -AAWVDELAKWKRGQEAWDQLQFAL-RLGERPQVCVTTTPRNVD--VLKALLQSPSTVTT 177
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ SF E + ARY + + R E+ G + ++E R
Sbjct: 178 HAPTEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEGALWTSALLEA--GRVQ 234
Query: 311 CPDPYAPLIMGCDIA---EEGGDNTVVVLRRGPVIEHLFDWS----------KTDLRTTN 357
+++G D A G D +V+ +W
Sbjct: 235 VAPELDRIVVGLDPATTSGAGSDECGIVVVGAQTQGPPQEWRAVVLADCTVQGATPNGWA 294
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNRRTE 415
+ +Y D ++ + N G + L + + V + V R E
Sbjct: 295 QAAIAAMTRYGADRLVAEVNQGGQLVSEVLRQVDPLVSLKTVHAARGKV-------ARAE 347
Query: 416 LHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + + L L + + + G S D D L++
Sbjct: 348 PVAALYEQGRVSHLPGLDALEDQMCLMTARGYEGKG-------------SPDRVDALVWA 394
Query: 476 FAE 478
E
Sbjct: 395 LHE 397
>gi|226940436|ref|YP_002795510.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715363|gb|ACO74501.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 93
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNS 69
+ + +L +L E + LH + WG LEG + PR+WQ E M + H N
Sbjct: 3 DIDDELIELA--AECATDPLRWALHAYDWGR--GELEGVTGPRAWQREVMSDIGNHLKNP 58
Query: 70 VNNPNPEVFKGAISAGRGIG 89
+ A AGRG+G
Sbjct: 59 ATRFS------AFDAGRGLG 72
>gi|219723016|ref|YP_002474442.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692691|gb|ACL33908.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
Length = 450
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNMATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|226246851|ref|YP_002776184.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
gi|226202003|gb|ACO38584.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
Length = 450
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNMATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|83717940|ref|YP_439548.1| putative ATPase subunit of terminase (gpP-like) [Burkholderia
thailandensis E264]
gi|83651765|gb|ABC35829.1| Putative ATPase subunit of terminase (gpP-like) [Burkholderia
thailandensis E264]
Length = 601
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + F + S L+ ++ + P
Sbjct: 362 IDELRREYSAEE--FANLLMCHFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 418
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV+ G + + D I + ++Y
Sbjct: 419 GYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRY 478
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 479 NVGYIAIDTTGMGQGVYQLVRK 500
>gi|257142677|ref|ZP_05590939.1| putative ATPase subunit of terminase (gpP-like) protein
[Burkholderia thailandensis E264]
Length = 589
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 21/142 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
+ + Y + + F + S L+ ++ + P
Sbjct: 350 IDELRREYSAEE--FANLLMCHFIDDSL-SVFKLSDLQRCMVDSWEEWADDFSPLLLRPF 406
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL-----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
Y + +G D A G +VV+ G + + D I + ++Y
Sbjct: 407 GYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRY 466
Query: 368 RPDAIIIDANNTGARTCDYLEM 389
I ID G +
Sbjct: 467 NVGYIAIDTTGMGQGVYQLVRK 488
>gi|269838926|ref|YP_003323618.1| hypothetical protein Tter_1890 [Thermobaculum terrenum ATCC
BAA-798]
gi|269790656|gb|ACZ42796.1| hypothetical protein Tter_1890 [Thermobaculum terrenum ATCC
BAA-798]
Length = 534
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 71/247 (28%), Gaps = 33/247 (13%)
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
T+ P+ NT + ++ +EA + + M + +
Sbjct: 186 TFLSASPEASA-RGNTASLLLVANEAQDISPDRWDAVFDPMAASTNATTIFMGTVWTSRT 244
Query: 235 -----GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI---IARYGLDSDVTRVEVCG 286
++ + + F + + V P++ E + IA+ G R E
Sbjct: 245 LLARQMRYLRQLELEVGRRRVFMVPWQEVARHVPAYGERVQARIAQLGRHHPFVRTEY-C 303
Query: 287 QFPQQDIDSFIPLNIIEEALN---REPCPDPYAPLIMGCDIAEEG--------GDNTVVV 335
D F P + E R+ P P D+ E D+T +
Sbjct: 304 LEELSDDGGFFPPAVTERMRGDHPRQLLPTPGRTYAALLDVGGEDLAAGPSPRRDSTALT 363
Query: 336 LRRG-----------PVIEHLFDWSKTDLRTTNNKISGLVEK-YRPDAIIIDANNTGART 383
+ + + W+ ++ LV + +++DA GA
Sbjct: 364 IVEVCHPEGADLQPVYRVMTRYVWTGVGQPELLPQVVHLVRDVWACRRLVVDATGLGAGL 423
Query: 384 CDYLEML 390
L +
Sbjct: 424 ASALRRI 430
>gi|317490974|ref|ZP_07949410.1| terminase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920521|gb|EFV41844.1| terminase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 590
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 23/182 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + E + RY + + F D+ +
Sbjct: 328 PDGQWRYIITMEDAIRGGFNLADIERLRNRY--NDSTFAMLYMCVFVDSK-DAVFSFEDL 384
Query: 303 EEA-LNREP---------CPDPYAPLIMGCDIAEEGGDNT-------VVVLRRGPVIEHL 345
E ++R+ P + G D A G +T V+ + + + +
Sbjct: 385 ERCGVDRDIWQDFDIKLKRPFGDREVWAGYDPARSGDLSTFAVLAPPVLAVEK-FRVLEI 443
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML-GYHVYRVLGQKRAV 404
+W R N+I L KY + ID G + ++ G + +
Sbjct: 444 VNWHGMSFRWQANEIKKLFAKYNIRYLGIDVTGIGNAVFENIQHFAGRVAVPIRYSVKTK 503
Query: 405 DL 406
D
Sbjct: 504 DE 505
>gi|30062201|ref|NP_836372.1| hypothetical protein S0695 [Shigella flexneri 2a str. 2457T]
gi|309786465|ref|ZP_07681089.1| phage terminase large subunit domain protein [Shigella dysenteriae
1617]
gi|30040446|gb|AAP16178.1| hypothetical bacteriophage protein [Shigella flexneri 2a str.
2457T]
gi|308925653|gb|EFP71136.1| phage terminase large subunit domain protein [Shigella dysenteriae
1617]
gi|313649746|gb|EFS14170.1| phage terminase large subunit domain protein [Shigella flexneri 2a
str. 2457T]
gi|332761021|gb|EGJ91309.1| phage terminase large subunit domain protein [Shigella flexneri
4343-70]
gi|332761177|gb|EGJ91463.1| phage terminase large subunit domain protein [Shigella flexneri
2747-71]
gi|332763392|gb|EGJ93632.1| phage terminase large subunit domain protein [Shigella flexneri
K-671]
gi|333008020|gb|EGK27496.1| phage terminase large subunit domain protein [Shigella flexneri
K-218]
gi|333021447|gb|EGK40697.1| phage terminase large subunit domain protein [Shigella flexneri
K-304]
Length = 77
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 443 KSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 24 PHRDFDRNGRVMVESKKDLAKREIPSPNVADAFIMAFAPIDTSLD 68
>gi|226315790|ref|YP_002776047.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
gi|226201663|gb|ACO38256.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
29805]
Length = 450
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDID 294
F + + +K + T + F E Y D + + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKPY-KDIPLYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|169794751|ref|YP_001712544.1| phage-related terminase, ATPase subunit (GPP-like) [Acinetobacter
baumannii AYE]
gi|169147678|emb|CAM85541.1| phage-related terminase, ATPase subunit (GPP-like) [Acinetobacter
baumannii AYE]
Length = 604
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 43/271 (15%), Positives = 84/271 (30%), Gaps = 53/271 (19%)
Query: 246 DDWKRFQIDTRTVEGI--DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
D R ++ + E D E +IA + +F S PL++I+
Sbjct: 342 DKMWRHIVNIQDAERQGCDLFDIEELIAE--NSPEEFANLYMCEFVDDG-HSVFPLSVIQ 398
Query: 304 EALN------------REPCPDPYAPLIMGCDIAEEGGDN--TVVVLRRGPVIE-HLFDW 348
+ P P+ +G D AE G V+ + L +
Sbjct: 399 PCMVDSWEVWSKDFKPLALRPFGNKPVWIGYDPAESGDSAGLVVIAPPEPDYPKFRLLEH 458
Query: 349 SKTDLRTTNNK---ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+ ++ I L KY I +D + G +
Sbjct: 459 HQFKGMDFASQAQYIKKLTTKYNVKYIGLDKSGMGTGVAQLV------------------ 500
Query: 406 LEFCRNRRTELH-VKMADWL--EFASLINHS---------GLIQNLKSLKSFIVPNTGEL 453
L+F N T + V + L + +IN + ++ +++ + + ++
Sbjct: 501 LDFFPNLTTFNYSVDVKTQLVMKAMDVINKERFEFDAGSTDVAMSIMAIRKTLTASQRQM 560
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
E+ R + D + + + FA P D
Sbjct: 561 TFEASRAENIGHADLAFAIFHAFANEPLTLD 591
>gi|239504148|ref|ZP_04663458.1| putative phage terminase [Acinetobacter baumannii AB900]
Length = 413
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 53/317 (16%), Positives = 88/317 (27%), Gaps = 45/317 (14%)
Query: 81 AISAGRGIGKTTLNAWLV---LWLMSTRPGISVIC--LANSETQLKTTLWAEVSKWLSLL 135
A AG G GKT + + W V A + Q++ + +
Sbjct: 7 AFVAGFGSGKTWVGCSSLCNKAW-----EFPKVPLGYFAPTYPQIRDIFFPTI-----EE 56
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
W + + + Y T S E+P T VG + +
Sbjct: 57 VAFDWGLKTKVY--------ETNKEVDIYYGRQYRTTIICRSMEKPATIVGFKIGHAL-- 106
Query: 196 INDE----ASGTPDVINLGILGFLTERNANRF-WIMTSNPRRLSGKFYEIFNKP------ 244
DE A I+ + + A I + YE F K
Sbjct: 107 -IDELDVMAMTKAQQAWRKIIARMRFKQAGLLNGIDVATTPEGFKFTYEQFVKEANKSEA 165
Query: 245 -LDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ Q T E + + + Y + + GQF + P +
Sbjct: 166 KRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFD 222
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKIS 361
+ + PL++G D V V+R G L + D T I+
Sbjct: 223 RVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVIREG-KPRALDELVGVRDTPTMCQLIN 281
Query: 362 GLVEKYRPDAIIIDANN 378
+ +I DA+
Sbjct: 282 ERFPDH-DITVIPDASG 297
>gi|195942579|ref|ZP_03087961.1| hypothetical protein Bbur8_07059 [Borrelia burgdorferi 80a]
Length = 450
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHRQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K ++ T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYKFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|70727357|ref|YP_254273.1| putative phage terminase large subunit [Staphylococcus haemolyticus
JCSC1435]
gi|68448083|dbj|BAE05667.1| putative phage terminase large subunit [Staphylococcus haemolyticus
JCSC1435]
Length = 421
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 32/244 (13%), Positives = 81/244 (33%), Gaps = 28/244 (11%)
Query: 56 LEFMEVVDAHCLNS-VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
L +++ H + NP++ GRG GK++ + ++ + R ++ + +
Sbjct: 5 LNLSQLIPKHFHDLWRATKNPDILNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVR 63
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
++ L T+++ ++ + H F+++ + + + R
Sbjct: 64 KTDNTLATSVFEQIKWAIEEQKVSHLFKIKVS------------PMEITFIPRGNRIIFR 111
Query: 175 TYSEERPDTFVGHHNTYG-MAIINDEASG---TPDVINLGILGFL---TERNANRFWIMT 227
+ P+ ++ +I+ E G T D + L + + +
Sbjct: 112 GA--QNPERLKSLKDSRFPFSIMWIEELGEFKTEDEVTTITNSMLRGELDEGLFYKFYFS 169
Query: 228 SNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
NP + + YE +P + + I F + + + R E
Sbjct: 170 YNPAKRKQHWANKKYETSFQPDNTFVHHS-TYLNNPFISKQFIQEAESAKQRNELRYRWE 228
Query: 284 VCGQ 287
G+
Sbjct: 229 YLGE 232
>gi|84687555|ref|ZP_01015431.1| hypothetical protein 1099457000249_RB2654_04994 [Maritimibacter
alkaliphilus HTCC2654]
gi|84664464|gb|EAQ10952.1| hypothetical protein RB2654_04994 [Rhodobacterales bacterium
HTCC2654]
Length = 260
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 78/258 (30%), Gaps = 39/258 (15%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
P +WQ F+ +P V R IGK+ A L PG
Sbjct: 28 GPPDNWQRRFL-----------TTASPFVMALC---SRRIGKSQTTAILAA-QTIGAPGR 72
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
+V+ L+ + Q L+ + + SL + + + G
Sbjct: 73 TVLVLSPTLGQ-SQLLFKRI---------LEAWAAMSLPIEKTRLTQTTMELANG----- 117
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
S + + + + G+ G +I +E + D + + + ++ +
Sbjct: 118 -SVVACVPAGQDGSSARGYGVKDGGLLIYEEGAFLADAVYDATIPIREDGG---RILLIT 173
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
P + G + + + + +I R+ E + RY + E ++
Sbjct: 174 TPGNVGGFAHTAWTENDEI---EKITARSTEIERMAEKVAFDRRY-MPPRQFATEHELRW 229
Query: 289 PQQDIDSFIPLNIIEEAL 306
D IE A
Sbjct: 230 SSGG-DPLFASETIENAF 246
>gi|298247861|ref|ZP_06971666.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
gi|297550520|gb|EFH84386.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
Length = 499
Score = 47.0 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 64/381 (16%), Positives = 114/381 (29%), Gaps = 65/381 (17%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRG----------IGKTTLNAWLVLWLMSTRPG 107
F V L + ++ GRG +GK L+A L +L+
Sbjct: 23 FAREVLGKPLYPYQELVGDAILESVLEGRGDTFTVMFARQMGKNQLSATLEAYLLFCMRE 82
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM-QSLSLHPAPW--YSDVLHCSLGI 164
S++ A + K ++ + + + + W Y + +
Sbjct: 83 GSIVKAAPTY------------KPQTINSRQRLLSLLDNPLMRNRVWKHYGYTIGMAPRH 130
Query: 165 DSKHYSTMCRT--YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ Y T R +S + VG T + + DEA L +
Sbjct: 131 EQVPYQTGPRVMFFSAGPGASIVG--ATASLLLEIDEAQSIDPNKYDTDLRPMASTTNAT 188
Query: 223 FWIMTSNPRRLSGKFY-EIFN----KPLDDWKRFQIDTRTVEGID---PSFHEGIIARYG 274
+ + + N + + F D RT+ I+ + E I R G
Sbjct: 189 TVLYGTAWSEETLLARMRTHNLELERLDGRQRHFAYDWRTLAAINDHYKRYVESEIKRLG 248
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-----EPCPDP-YAPLIMGCDIAEEG 328
D R + P LN ++ +L R E PDP + G DIA E
Sbjct: 249 EDHISIRTQYR-LLPILGSGYL--LNDLQFSLLRGQHTWESSPDPAEGFYVAGLDIAGEQ 305
Query: 329 G----------DNTVVVLRR---------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
D+T++ + R I +DW+ +S ++ ++
Sbjct: 306 HARPGQPAGKHDSTILTIGRVTINDLGLPELRIVRHYDWTGMKYTDQYAAVSRILPEWNV 365
Query: 370 DAIIIDANNTGARTCDYLEML 390
++D G L
Sbjct: 366 RRTVVDKTGLGEGLASLLSTR 386
>gi|108799880|ref|YP_640077.1| phage terminase [Mycobacterium sp. MCS]
gi|119868990|ref|YP_938942.1| phage terminase [Mycobacterium sp. KMS]
gi|108770299|gb|ABG09021.1| phage Terminase [Mycobacterium sp. MCS]
gi|119695079|gb|ABL92152.1| phage Terminase [Mycobacterium sp. KMS]
Length = 489
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 60/363 (16%), Positives = 105/363 (28%), Gaps = 70/363 (19%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW-LMSTRPGISV 110
R WQ E SV + +P RG GK+TL A L+ + G V
Sbjct: 49 REWQQELA--------GSVLDADPRPRTAGWMLPRGQGKSTLLAAYGLYDFFTGDEGAVV 100
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+A E Q ++ +++ + L ++ Q L I +
Sbjct: 101 CVVAVDERQAG-IIFG-IARRMVELSDELASRCQVFK------------ERLYIPERDAH 146
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
C P G T + DEA G + +L + A I P
Sbjct: 147 FHCLPA---EPKRLEGLDYTTALL---DEA-GVASRDSYEVLTLAQGKRAQSTLIAIGTP 199
Query: 231 RRLSG--------KFYEIFNKPLDD-WKRFQI---------DTRTVEGIDPSFHEGIIAR 272
+ + W+ F T E +P+ + +
Sbjct: 200 GPDPNNQVLADLRNYAADHPEDASLVWREFSAAGFEDHPVDCTHCWELANPALDDFLHRD 259
Query: 273 --------YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
++ R QF +F+P + + P PD +++ D
Sbjct: 260 ALYALLPPKTREATFRRAR-LCQFASDTDGAFLPQGVWDGLSTGRPIPD-GTEVVVALD- 316
Query: 325 AEEGGDNTVVVLRR---GPVIEHLFDWSKTDLR--------TTNNKISGLVEKYRPDAII 373
D T ++ P + + W +T+ ++I ++R II
Sbjct: 317 GSFSDDTTALLAGTVSAEPHFDTIHVWQRTNGDDSYRVPVAEVEDEIRAACRRWRVAEII 376
Query: 374 IDA 376
D
Sbjct: 377 ADP 379
>gi|237710644|ref|ZP_04541125.1| phage terminase large subunit [Bacteroides sp. 9_1_42FAA]
gi|229455366|gb|EEO61087.1| phage terminase large subunit [Bacteroides sp. 9_1_42FAA]
Length = 461
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 40/242 (16%)
Query: 262 DPSFHEGIIARYGLDSDVTRVE-VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
DP++ ++ + SD R + G + + I EAL R +
Sbjct: 212 DPTYLANLVNQ----SDEQRARDLDGNWKYKAAGDDIIKLTHMEALYRNSMQIGDGIRRV 267
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIIIDANN 378
CD A EGGD+ V+ L G I +F K D + T + + ++E++ R + D N
Sbjct: 268 SCDAAFEGGDSLVMWLWEGWHIRDIFV-CKLDSKKTVDTVKAVLEEWHVREECFTYDLNG 326
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEF----CRNRRTELHVKMADWLEFASLINHSG 434
G G+ + + E N +++ A + +
Sbjct: 327 LGQI------FKGFFPNAIPFNNKEAVEEKFKYIYTNLKSQAAYLFAQKIINREISIEPT 380
Query: 435 LIQNLKSLKSFIVPNTGELA-IESKRVKG---------------------AKSTDYSDGL 472
L++ S K F ++ E K ++ S D+ + L
Sbjct: 381 LLERKFSGKGFEKVPLRQILDKERKAIRKDEDSEEKGWTIIKKIIMKKLVGHSPDFIEAL 440
Query: 473 MY 474
+
Sbjct: 441 LM 442
>gi|15668504|ref|NP_247302.1| hypothetical protein MJ_0330 [Methanocaldococcus jannaschii DSM
2661]
gi|2833503|sp|Q57776|Y330_METJA RecName: Full=Uncharacterized protein MJ0330
gi|1591049|gb|AAB98318.1| hypothetical protein MJ_0330 [Methanocaldococcus jannaschii DSM
2661]
Length = 549
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 65/242 (26%), Gaps = 35/242 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMS--TRPG-----ISV--ICLANSETQLKTTLWAEVSKWLSLL 135
G+G GK + + L ++M + + +A ++ K + E W
Sbjct: 93 GKGGGKDFMVSLLFNYMMFRACVEDYYEKFTRIDFVNVAPNDHLAKNVFFKEFKAWFLKC 152
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+ AP +G +S R S + +
Sbjct: 153 KVWQMIGIDKKKRQKAPICVLETKAEIGDKITMHSGHSRATS---------FEGMNALCV 203
Query: 196 INDEASGTPDVINLGILGFLTERNANRF-------------WIMTSNPRRLSGKFYEIFN 242
+ DE D + ++ W P Y ++
Sbjct: 204 VADE---ISDPDFKNAEQLFEQGLSSAKSRFKDKARVVAITWTRFPTPNPRDDVGYRLYL 260
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ + +T E E A+Y + + R + P+ + FI L +
Sbjct: 261 DYKAVDEAYTFKGKTWEVNTRVSKEDFKAQYQKNPILARCMYECEPPELNA-YFISLEAL 319
Query: 303 EE 304
E
Sbjct: 320 EA 321
>gi|297848822|ref|XP_002892292.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
lyrata]
gi|297338134|gb|EFH68551.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
lyrata]
Length = 1406
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 13/155 (8%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAG-----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + ++ + F+ + G G GKT L + + P
Sbjct: 823 QQEGFEFIWKNLAGTILLNELKDFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLQCFPD 882
Query: 108 ISVICLANSETQLKTTLWA-EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ +A + L WA E KW +P + + + ++ + S
Sbjct: 883 CKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGKESSAALGLLMQKNATARS 939
Query: 167 KHYSTMCRTYSEERPDTFVG--HHNTYGMAIINDE 199
+ M + YS + + +G ++ +A + DE
Sbjct: 940 NNEIRMVKIYSWIKSKSILGISYNLYEKLAGVKDE 974
>gi|163742707|ref|ZP_02150092.1| terminase, large subunit, putative [Phaeobacter gallaeciensis 2.10]
gi|161383962|gb|EDQ08346.1| terminase, large subunit, putative [Phaeobacter gallaeciensis 2.10]
Length = 417
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 66/416 (15%), Positives = 112/416 (26%), Gaps = 65/416 (15%)
Query: 82 ISAGRGIGKTTLNA-WLVLWLMSTRPGI-----SVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A W+ P + L + Q++ + S L+
Sbjct: 25 ILGGRGAGKTRAGAEWVRTLAEGATPLSAGRARRIALLGETYDQVRDVMVQGDSGLLACT 84
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P + + +S P+ G A
Sbjct: 85 PRD---------------RRPTWKATERRLIWPNGATAQAFSAHDPEALRGPQFD---AA 126
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + L + R + + R G E+ P +
Sbjct: 127 WADELAKWKRGQDSWDMLQFALRLGDDPR--VCVTTTPRNVGVLRELLASPSTV-QTHAA 183
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA-LNREPCP 312
+ SF + RY S + R E+ G Q + + A + + P
Sbjct: 184 TEANRANLAASFLAEVRNRY-AGSRLGRQELDGILLQDIEGALWTNAGLVAAQIAKAPTL 242
Query: 313 DPYAPLIMGCDIAEEGG---DNTVVVLRRGPVIEHLFDW----------SKTDLRTTNNK 359
D +++ D A G D +V+ + DW T
Sbjct: 243 DR---VVVAVDPAVSAGKHSDACGIVVVGATLQGPPQDWCAYVLADCTVQGVGPLTWAQA 299
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
++Y D ++ + N GA L + V A+ + R E
Sbjct: 300 AIDARDRYGADRVVAEVNQGGALVESLLRQIDPLV-----PFTALHASRGKGARAEPVAA 354
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + + L L + G L G S D D L++
Sbjct: 355 LYEQGRVRHVPGLGALEDQLC-----QMTPRGYL--------GQGSPDRLDALVWA 397
>gi|315180730|gb|ADT87644.1| terminase [Vibrio furnissii NCTC 11218]
Length = 607
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 25/181 (13%), Positives = 47/181 (25%), Gaps = 23/181 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ I+ G D E + Y F S N +
Sbjct: 340 PDRQWRYVVTIEDAAKGGCDLFDIEELREEYSEHD--FNNLFMCIFVDGAS-SIFEFNKV 396
Query: 303 EEALNREPCPDPYA----------PLIMGCDIAEEGGDNTV-------VVLRRGPVIEHL 345
++ + + + +G D + DN V +V +
Sbjct: 397 QKCMVDAGIWQDFKASAKRPFGSREVWLGYDPSRT-RDNAVLMVVAPPIVAAEKFRVLEK 455
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQKRAV 404
W + ++I + E++ + ID GA D L +
Sbjct: 456 HTWRGLSFQHQASEIDKVFERFNVTYLGIDITGIGAGVYDLLSNKHPRETVAIHYSNENK 515
Query: 405 D 405
+
Sbjct: 516 N 516
>gi|153213615|ref|ZP_01948888.1| terminase [Vibrio cholerae 1587]
gi|124115814|gb|EAY34634.1| terminase [Vibrio cholerae 1587]
Length = 606
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 23/181 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G D + + + +F S N I
Sbjct: 346 PDKQWRYVITMEDAVKSGFDLADIDILREENSERD--FNNLFMCEFVDGAS-SIFEYNKI 402
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTV-------VVLRRGPVIEHL 345
+ + P + +G D + DN V +V +
Sbjct: 403 LRCMVDIEIWQDFKPSSDRPFGSREVWLGYDPSRT-RDNAVLMVVAPPIVAAEKFRVLEK 461
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQKRAV 404
W + ++IS + E++ + ID GA D L +
Sbjct: 462 HTWRGLSFQHQASEISKVFERFNVTYLGIDITGIGAGVYDLLSNKHPRETVAIHYSNENK 521
Query: 405 D 405
+
Sbjct: 522 N 522
>gi|160700654|ref|YP_001552334.1| gp5 [Mycobacterium phage Giles]
gi|159136604|gb|ABW88400.1| gp5 [Mycobacterium phage Giles]
Length = 544
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 74/440 (16%), Positives = 130/440 (29%), Gaps = 62/440 (14%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT L A +++ + G ++ A +K + + ++ + L
Sbjct: 109 GKTQLIALRIIYGL-FFLGEKIVYTAQRWQTVKDVY----DRIVEIIKRRPSLL---RRL 160
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
P P D + G + Y+T + VG T I DEA DV+
Sbjct: 161 KPMPGVPD-GYSEAGQHGEIYTTNGGSLDMGPRTKAVGRGQTKIDLAIFDEAYDIKDVLV 219
Query: 209 LGILG---FLTERNA---NRFWIMTSNP--RRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
G+ G T + + + +P L+G K D + +
Sbjct: 220 GGLTGAQKAATNPQTIYISTAAVASEHPDCGVLAGMRRNGQRKEPDLYAAEWCAPPGMAR 279
Query: 261 IDPSFHEGIIARYG---LDSDVTR--------VEVCGQFPQQDIDSFIPLNIIEEALNRE 309
DP +G + D+ R + + D D + N E
Sbjct: 280 DDPEAWRLACPSFGITVRERDLAREYRMARANARLLAIY---DADYLGWGEWPPDPENTE 336
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLR----------------RGPVIEHLFDWSKTDL 353
P DP + GD + + R G V + W ++
Sbjct: 337 PIIDPDWWEALTVLQPALVGDICIAIERTLDTRYWCIAAGQRTIDGRVHVEVGYWRAANI 396
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ LVE + P AII+D + + G + K A+ + +
Sbjct: 397 GVVAAALLELVELWNPAAIIVDDRSKAKPIVGVMFNQGIEIETASTPKLAMYTQGFIDA- 455
Query: 414 TELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
V AD +I + + + G+L + K + + L
Sbjct: 456 ----VNAADVTHIG-----QKIITDGIAGAAMRELPRGDLVFDEKESGAPVAPLKAIALA 506
Query: 474 YT-----FAENPPRSDMDFG 488
+ AE P + D G
Sbjct: 507 HGAVLEYAAEPKPAASPDTG 526
>gi|281416525|ref|YP_003347326.1| terminase large subunit [Enterococcus phage phiFL2A]
gi|270209389|gb|ACZ63932.1| terminase large subunit [Enterococcus phage phiFL2A]
gi|270209454|gb|ACZ63996.1| terminase large subunit [Enterococcus phage phiFL2B]
Length = 430
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 51/354 (14%), Positives = 100/354 (28%), Gaps = 42/354 (11%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG KTT A + LM P ++I L ++T + E+ ++ + + +F+
Sbjct: 52 RGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDT---DVV--EIILQVAKVLSSKYFKTLV 106
Query: 146 LSLH--PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+L+ + + + G H +I D+
Sbjct: 107 FALYGVELVLLKETTTEVDTNLKTSSRGTSQLLGMGIYASLTGKHAD---IVITDDIVNI 163
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI---FNKPLDDWKRF---QIDTRT 257
D ++ + N + G+F ++K K + D
Sbjct: 164 KDRVSRA-----ERERTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKMPNVKKFDCYE 218
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
ID + + + + + + F + +N +
Sbjct: 219 TGLIDKEQRQAL--QQAMTPSLFAANYELKHIADSESLFTAPTYTDS-INLIYNGVAH-- 273
Query: 318 LIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
D A G D+T + + G +I + W K +I L + Y+
Sbjct: 274 ----VDAAYGGDDSTAFTIFKEQKDGTIIGYGRKWQKHVDDCLP-EILRLHQHYQAGTFH 328
Query: 374 IDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL--HVKMADWLE 425
+ N L G V + T L + + WLE
Sbjct: 329 TETNGDKGYLAKNLRECGQFVTEYHES-----MNKFIKISTYLRKYWHLIIWLE 377
>gi|291326278|ref|ZP_06123867.2| terminase, ATPase subunit [Providencia rettgeri DSM 1131]
gi|291314958|gb|EFE55411.1| terminase, ATPase subunit [Providencia rettgeri DSM 1131]
Length = 574
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 47/253 (18%), Positives = 79/253 (31%), Gaps = 48/253 (18%)
Query: 248 WKRFQ-IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI-----DSFIPLNI 301
W++ I G++ E I D R +F + D+ I +
Sbjct: 312 WRQIVNIHDAIARGLNRVNLEEIKDE--NPPDDFRNLYECEFVKTGERAFSYDALINCGV 369
Query: 302 IEEALNREPCPDPYAP-------LIMGCDIAEEGGDNTVVVLRR-------GPVIEHL-- 345
+ P PYAP + +G D G + + L G +
Sbjct: 370 DGYNSDVWPDWKPYAPRPLGNRPVWVGADPTGTGDNGDGLGLVVASPPAVSGGKFRIIET 429
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN-NTGARTCDYLEM-------LGYHVYRV 397
++I + ++Y +I ID TGA + + L Y +
Sbjct: 430 IQLRGMAFEKQADEIKRITQRYNVLSITIDGTGGTGAAVHELVVKFFPAANLLNYSA-PI 488
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
L RN R E + H LI + ++K + +G + ES
Sbjct: 489 KRMMIMKMLMLIRNGRFEYDAGL-----------HKPLITSFMTIKK-VQTQSGIITYES 536
Query: 458 KRVKGAKSTDYSD 470
RV+G D+ D
Sbjct: 537 SRVRGL---DHGD 546
>gi|226329986|ref|ZP_03805504.1| hypothetical protein PROPEN_03899 [Proteus penneri ATCC 35198]
gi|225200781|gb|EEG83135.1| hypothetical protein PROPEN_03899 [Proteus penneri ATCC 35198]
Length = 584
Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 23/140 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN-----------REPCPDP 314
E + Y D + F DI+S N+++ + P
Sbjct: 344 LEQLKKEY--SPDEYNNLLMCHF-MDDIESLFNFNMMQNCMVDSWEVWDDIQPLALRPYG 400
Query: 315 YAPLIMGCDIAEEG--GDNT---VVVLRR--GPVIEHL--FDWSKTDLRTTNNKISGLVE 365
Y P+ +G D ++ G GD+ V+ + G L W D R + I + E
Sbjct: 401 YDPVWVGYDPSKGGENGDSAGCVVIAPPKVPGGKFRILERHQWRGMDFRAQADAIKKITE 460
Query: 366 KYRPDAIIIDANNTGARTCD 385
++ + + ID G
Sbjct: 461 RFYVEYMGIDTTGLGHGVYQ 480
>gi|197285843|ref|YP_002151715.1| phage terminase, ATPase subunit [Proteus mirabilis HI4320]
gi|194683330|emb|CAR44037.1| phage terminase, ATPase subunit [Proteus mirabilis HI4320]
Length = 584
Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 23/140 (16%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN-----------REPCPDP 314
E + Y D + F DI+S N+++ + P
Sbjct: 344 LEQLKKEY--SPDEYNNLLMCHF-MDDIESLFNFNMMQNCMVDSWEVWDDIQPLALRPYG 400
Query: 315 YAPLIMGCDIAEEG--GDNT---VVVLRR--GPVIEHL--FDWSKTDLRTTNNKISGLVE 365
Y P+ +G D ++ G GD+ V+ + G L W D R + I + E
Sbjct: 401 YDPVWVGYDPSKGGENGDSAGCVVIAPPKVPGGKFRILERHQWRGMDFRAQADAIKKITE 460
Query: 366 KYRPDAIIIDANNTGARTCD 385
++ + + ID G
Sbjct: 461 RFYVEYMGIDTTGLGHGVYQ 480
>gi|224020497|ref|YP_002601287.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|223929730|gb|ACN24438.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
Length = 450
Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYINNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYIFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|313649747|gb|EFS14171.1| phage terminase large subunit domain protein [Shigella flexneri 2a
str. 2457T]
gi|332761022|gb|EGJ91310.1| phage terminase large subunit domain protein [Shigella flexneri
4343-70]
gi|332761328|gb|EGJ91614.1| phage terminase large subunit domain protein [Shigella flexneri
2747-71]
gi|332763393|gb|EGJ93633.1| phage terminase large subunit domain protein [Shigella flexneri
K-671]
gi|333007918|gb|EGK27394.1| phage terminase large subunit domain protein [Shigella flexneri
K-218]
gi|333021518|gb|EGK40768.1| phage terminase large subunit domain protein [Shigella flexneri
K-304]
Length = 159
Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 25/135 (18%)
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW--SKTDLRTTNNKISGLVE 365
+ +P +G D+A+ G D V R G V+ +W + +L + +
Sbjct: 5 KTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAAL 64
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLG------------YHVYRVLGQ----------KRA 403
+ D I+ D+ GA + + R
Sbjct: 65 EREAD-IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGI 123
Query: 404 VDLEFCRNRRTELHV 418
+ +F N + +
Sbjct: 124 PNKDFFANLKAQAWW 138
>gi|84687436|ref|ZP_01015314.1| Putative large terminase [Maritimibacter alkaliphilus HTCC2654]
gi|84664594|gb|EAQ11080.1| Putative large terminase [Rhodobacterales bacterium HTCC2654]
Length = 426
Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 67/437 (15%), Positives = 116/437 (26%), Gaps = 75/437 (17%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ + G V + + Q++ +
Sbjct: 33 ILGGRGAGKTRAGA---EWVRAQVEGPAPLSPGRAGRVALIGETFDQVRDVMV------- 82
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
F + P + ++S P+ G
Sbjct: 83 --------FGDSGIVACAPPDRRPAWEATKRRLVWPNGATATSFSASEPEGLRGPQFD-- 132
Query: 193 MAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + D + L + R + T PR + I + L
Sbjct: 133 -AAWADELAKWKKVDDAWDMLQFALRLGDHPRQVVTT-TPRDVP-----ILRRLLTLSST 185
Query: 251 FQIDTRTVEG---IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
T + SF E I ARYG + R E+ G +F ++E+
Sbjct: 186 VTTHAPTTANRANLAKSFLEEIEARYGGT-RLGRQELEGVLLDDREGAFWSTAMLEDC-- 242
Query: 308 REPCPDPYAPLIMGCDI---AEEGGDNTVVVLRRGPVIEHLFDWSK----------TDLR 354
R P P + +++ D G D +V+ W
Sbjct: 243 RIDGPPPLSRIVVAVDPPVTGHAGSDECGIVVAGAVTEGAPGAWRAVVLEDASVKAAKPI 302
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRT 414
+E+Y D ++ + N G + + + G + A R
Sbjct: 303 DWARAALDAMERYGADRLVAEVNQ-GGDLVETVIRQIDPLVPYRGVRAAKGKS----ARA 357
Query: 415 ELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
E + + + L L + + G S D D L++
Sbjct: 358 EPVAALYEQGRVSHLRGLGDLEDQMCLMTVQGFEGKG-------------SPDRVDALVW 404
Query: 475 TFAENPPRSDMDFGRCP 491
+ + R
Sbjct: 405 ALTDLVVEPGAKWRRPQ 421
>gi|66396341|ref|YP_240671.1| ORF008 [Staphylococcus phage 88]
gi|66396415|ref|YP_240743.1| ORF009 [Staphylococcus phage 92]
gi|62636756|gb|AAX91867.1| ORF008 [Staphylococcus phage 88]
gi|62636829|gb|AAX91940.1| ORF009 [Staphylococcus phage 92]
Length = 421
Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 44/320 (13%), Positives = 101/320 (31%), Gaps = 35/320 (10%)
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
+ EV GRG GK++ + ++ + R ++ + + ++ L T+++ ++
Sbjct: 22 TKDKEVLNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWA 80
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ H F+++ + + + R + P+ ++
Sbjct: 81 IEEQKVSHLFKVKVS------------PMEITYIPRGNRIIFRGA--QNPERLKSLKDSR 126
Query: 192 ---GMAIINDEASGTPDVINLGILGFL----TERNANRFWIMTSNPRRLSGKF----YEI 240
+A I + A + I L + + + NP + + YE
Sbjct: 127 FPFSIAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYES 186
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
+ + + I F + + + R E G+ + F L
Sbjct: 187 SFQADNTYVHHS-TYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVVPFNNLR 245
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTT 356
IEE R+ D + + D D V ++ VI + ++ +
Sbjct: 246 -IEEIPQRQY--DTFDNIRNAVDFG-YATDPLAFVRWHYDKKKRVIYAMDEYYGVQISNR 301
Query: 357 NNKISGLVEKYRPDAIIIDA 376
+ Y+ D I D+
Sbjct: 302 EFANWLKKKGYQSDEIFADS 321
>gi|195942518|ref|ZP_03087900.1| hypothetical protein Bbur8_06704 [Borrelia burgdorferi 80a]
gi|312149990|gb|ADQ30051.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 450
Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + ++ +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNVETFKTYNFTTYDNVFLSKGFIETQEKLY-KDIPAYKARVLLGEWLASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI E+ + P I D GGDNT + +
Sbjct: 265 IFTQINITEDYMFTSP--------IAYLDPTFSVGGDNTALCV 299
>gi|222147998|ref|YP_002548955.1| large terminase [Agrobacterium vitis S4]
gi|221734986|gb|ACM35949.1| large terminase [Agrobacterium vitis S4]
Length = 459
Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 63/403 (15%), Positives = 119/403 (29%), Gaps = 54/403 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GKT A + I A ++ ++ L E + +
Sbjct: 83 GGRGSGKTRAGA----------EWVHEIASAGEKSAVRIALVGETLGDAREVMVDGLSGI 132
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
++ H P + S M + +S E P++ G DE +
Sbjct: 133 ARIARHKRP----EVEISRRRLVWPNGAMAQMFSAEDPESLRG---PQFHYAWCDEIAKW 185
Query: 204 --PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
+ + L + R I T+ P R + P R +
Sbjct: 186 KHAEETFDMLQFSLRLGDDPRQVI-TTTP-RPVPILKRLLADPGTRLTRLSTFGNAC-NL 242
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
P F E + ARYG + R E+ G+ + D+ + +E+ R +P +++G
Sbjct: 243 APGFIEALQARYGGT-RLGRQELDGELIEDREDALWRRDRLEQLTVR--LSEPLHRIVVG 299
Query: 322 CDIAEEGGDNTVVVL------RRGPVIEHLF-DWSKTDLRTTNNKISGLVEKYRPDAIII 374
D G +V + R G + + + + ++ D ++
Sbjct: 300 VDPPSGAGAQSVCGIIVAGLDRLGRAVVLADCSVTGESPASWATAVVRAFRRFEADRVVA 359
Query: 375 DANNTGARTCDYLEML--GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH 432
+ N G L+ + V V + R E + +
Sbjct: 360 EVNQGGEMVGALLKSVDANLPVRMVRATRGKF-------LRAEPVAALYEQGRVFHAARF 412
Query: 433 SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ L + + N +S D D L++
Sbjct: 413 ADLEDQMCDFGPEGLSN-------------GQSPDRLDALVWA 442
>gi|312148837|gb|ADQ31485.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|312148805|gb|ADQ31454.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|312147637|gb|ADQ30298.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|312147604|gb|ADQ30266.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|224590670|ref|YP_002640676.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224553765|gb|ACN55167.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|224983785|ref|YP_002641105.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|224553986|gb|ACN55383.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|195942842|ref|ZP_03088224.1| hypothetical protein Bbur8_08565 [Borrelia burgdorferi 80a]
gi|312150044|gb|ADQ30103.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
N40]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|225622041|ref|YP_002724986.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
gi|225546350|gb|ACN92359.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
94a]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|225576422|ref|YP_002725451.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|225547005|gb|ACN92996.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|226322171|ref|ZP_03797692.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
gi|226232426|gb|EEH31184.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|226246703|ref|YP_002776000.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|226202392|gb|ACO38050.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|224022662|ref|YP_002606275.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|224593632|ref|YP_002640950.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
gi|223929246|gb|ACN23964.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|224554688|gb|ACN56067.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|219723193|ref|YP_002474612.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|224591572|ref|YP_002640899.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
gi|219693035|gb|ACL34243.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|224554907|gb|ACN56281.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|11497124|ref|NP_051248.1| hypothetical protein BB_S45 [Borrelia burgdorferi B31]
gi|223987739|ref|YP_002601211.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|6382145|gb|AAF07462.1|AE001576_21 conserved hypothetical protein [Borrelia burgdorferi B31]
gi|223929452|gb|ACN24166.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|221316998|ref|YP_002533177.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|221237630|gb|ACM10461.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI + +A I D A GGDNT + +
Sbjct: 265 IFTQINITD--------DYVFASPIAYLDPAFSVGGDNTALCV 299
>gi|238764966|ref|ZP_04625904.1| terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
gi|238696825|gb|EEP89604.1| terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
Length = 591
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 33/243 (13%), Positives = 64/243 (26%), Gaps = 46/243 (18%)
Query: 195 IINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFY---EIFNKPLDDWK 249
+ DE P+ +N G T ++ + T + + G + + + K K
Sbjct: 253 LYIDEYLWIPNFRRLNEVASGMATHKHWRITYFSTPSAKTHQGYPFWSGDEWRKGDTKRK 312
Query: 250 RFQIDT--------RTVE----------------GIDPSFHEGIIARYGLDSDVTRVEVC 285
+ R G + + + RY +
Sbjct: 313 DVVFPSFDEMRDGGRECPDGQWRYVVTLEDAIAGGFNLADINELRERYNES--AFNMLFM 370
Query: 286 GQFPQQDIDSF---------IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
F F + + E+ EP P + G D A + T VV+
Sbjct: 371 CVFVDDKESVFKFGDLMRCGVDIRTWEDFHPDEPMPFGNREVWGGFDPARSNDNATFVVV 430
Query: 337 R------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
+ W + +I + +Y I ID G + ++
Sbjct: 431 APPLVAAERFRVLEKHHWRSMSFQFMAERIRSIKARYNMTYIGIDVTGLGYGVFELVQGF 490
Query: 391 GYH 393
+
Sbjct: 491 AHR 493
>gi|226246889|ref|YP_002776229.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
gi|226202275|gb|ACO37943.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYIFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|94263678|ref|ZP_01287487.1| hypothetical protein MldDRAFT_1386 [delta proteobacterium MLMS-1]
gi|93455983|gb|EAT06138.1| hypothetical protein MldDRAFT_1386 [delta proteobacterium MLMS-1]
Length = 457
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 71/409 (17%), Positives = 112/409 (27%), Gaps = 66/409 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMS-----------TRPGISVIC--LANSETQLKTTLWAEVSK 130
AGR GKT A + ++L + PG + LA Q K L ++
Sbjct: 64 AGRRSGKTNATAGIAVYLATIGAAVDGLLDKLAPGERGVVALLAVDRQQAKVAL-RYIA- 121
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
+ + + D + + S RT D
Sbjct: 122 --GMFEASPVLAQMVVKRDAEALHLDNRISIEVSTNNYRSVRGRTLLAAVLDEVA----- 174
Query: 191 YGMAIINDEASGTPDV-INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD--- 246
D+ S PDV IL L + S+P G Y+ + K
Sbjct: 175 ----FFRDDQSANPDVETYRAILPGLATTGG--LLVGISSPYAKRGLLYQKWRKHYGQDG 228
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
D Q T P+ I D R E G F + D++ F+ ++E
Sbjct: 229 DILVIQGATPDFNPTIPTSV--ITDAEADDPAAARAEWFGLF-RDDVEGFLTREVVEACT 285
Query: 307 NREPCPDPYAP---LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW---SKTDLRTTNNKI 360
P PY D A G D + + + D + +
Sbjct: 286 RPSPLVIPYNRENIYTAFADPAGGGRDEFCLAIGHQEGEVVVVDNLQARRGAPAKIVAEY 345
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ L++ Y AI D G+ D G K L+
Sbjct: 346 ADLLKAYNVQAITADRY-AGSWPADEFARHGITCNPAANSKSVFYLDALA-----AFNSG 399
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAK-STDY 468
L L+ L + +E + +G + S D+
Sbjct: 400 R-----LQLPPDDMLLNQLTA-------------LERRTARGGRDSIDH 430
>gi|327198525|ref|YP_004327112.1| phage terminase large subunit [Pseudoalteromonas phage H105/1]
gi|304367920|gb|ADM26679.1| phage terminase large subunit [Pseudoalteromonas phage H105/1]
Length = 414
Score = 46.3 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 65/413 (15%), Positives = 112/413 (27%), Gaps = 50/413 (12%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
N N ++ + G G GKT + +L P S ++ +
Sbjct: 8 QNIFLNELNTKYRAYV-GGFGSGKTFVGCMDLLNFFGKHPRTRQGYFGTSYPSIRDIFYP 66
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
FE +L + + + Y S +RP+T VG
Sbjct: 67 -------------TFEEAALMMGFTVDIKESNKEVHVYRNGFYYGTVICRSMDRPNTIVG 113
Query: 187 HHNTYGMAIINDEASGTPDV----INLGILGFL--TERNANRFWIMTSNPRRLSGKFYEI 240
+ + DE P I+ L +T+ P + +
Sbjct: 114 FKVSRAL---VDEIDTLPKDKATNAWNKIVARLRLKIDGVENGIGVTTTPEGFLFVYSKF 170
Query: 241 FNKPLDDWKRFQIDTRTV-EGIDPSFHEGIIARYGLD-SDVTRVEVCGQFPQQDIDSFIP 298
++P + Q T E + + + + Y D + G+F S P
Sbjct: 171 KDEPTKSYSMVQASTYENAEFLPDDYIDTLKETYPEGLIDAY---LMGKFVNLTAGSVYP 227
Query: 299 LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNN 358
+ + E P PLI+G D + V R G D
Sbjct: 228 QYGRNKNNSFESIQ-PQDPLIVGMDFNVNDMAACIFVERDGIYHCVEELTKGRDTDYMAR 286
Query: 359 KISG-LVEKYRPDAIIIDANN-----TGART--CDYLEMLGYHVYRVLGQKRAVDLEFCR 410
+ ++K + DA+ GA D L+ G V R + C
Sbjct: 287 ILKERYLDKGHRVTVYPDASGKNTSSKGADKSDIDILKSYGLWVVAKDSNPRVRERVNCV 346
Query: 411 NRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
NR + + + + I+ G E + G
Sbjct: 347 NRGFQ---DLKIMINSMRCPETAKCIEQQP------YDKNG----EPDKKSGL 386
>gi|87201130|ref|YP_498387.1| hypothetical protein Saro_3118 [Novosphingobium aromaticivorans DSM
12444]
gi|87136811|gb|ABD27553.1| protein of unknown function DUF264 [Novosphingobium aromaticivorans
DSM 12444]
Length = 440
Score = 46.3 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 71/425 (16%), Positives = 130/425 (30%), Gaps = 55/425 (12%)
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
S P + + AGRG GKT L A V + P + + S + ++ +
Sbjct: 43 QSQQAPPSDWRVWLVMAGRGFGKTRLGAEWVRKIAEEDPEARIALVGASLHEARSVMVE- 101
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
L APW V S+ YS P++ G
Sbjct: 102 --------------GESGLLSIDAPWRRPVFESSVRRLVWPNGAQAFLYSAGEPESLRGP 147
Query: 188 HNTYGMAIINDE------ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
+++ DE S +L L + + T+ P R I
Sbjct: 148 QHSHA---WCDEIAKWDNGSNRAMATWDNLLMGL-RLGRDPRLVATTTP-RPVPLVARIM 202
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
++ D + + F E + +G + + R E+ G+ + + + +
Sbjct: 203 DEGDDVVVTRGSTFENQDNLPRRFVEAMRRTFGGTT-LGRQELLGEMIEDLVGALWSRAL 261
Query: 302 IEEALNREPCPDPYAPLIMGCD-IAEEGGDNTVVV---LRRGPVIEHLFD--WSKTDLRT 355
IE A RE +++G D A GD ++ + + L D +
Sbjct: 262 IENA--REDAAPAMTRVVVGVDPPASAHGDACGIIVCGIGDDRIARVLADCSVEQASPER 319
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLE--MLGYHVYRVLGQKRAVDLEFCRNRR 413
++ + D ++ +AN G L + V + R
Sbjct: 320 WARAVANAARAWSADRVVAEANQGGEMVAAVLRAAEASLPLRLVHASRGKA-------AR 372
Query: 414 TELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
E L A + H+G+ L+ + + GE +S D +D +
Sbjct: 373 AE----PVAALYEAGRVRHAGMFPQLED-ELCGLMPGGEYQGP------GRSPDRADACV 421
Query: 474 YTFAE 478
+ E
Sbjct: 422 WALTE 426
>gi|188026021|ref|ZP_02997754.1| hypothetical protein PROSTU_02527 [Providencia stuartii ATCC 25827]
gi|188021298|gb|EDU59338.1| hypothetical protein PROSTU_02527 [Providencia stuartii ATCC 25827]
Length = 264
Score = 46.3 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 47/253 (18%), Positives = 78/253 (30%), Gaps = 48/253 (18%)
Query: 248 WKRFQ-IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI-----DSFIPLNI 301
W++ I G++ E I D R +F + D+ I +
Sbjct: 2 WRQIVNIHDAIARGLNRVNLEEIKDE--NPPDDFRNLYECEFVKTGERAFSYDALINCGV 59
Query: 302 IEEALNREPCPDPYAP-------LIMGCDIAEEGGDNTVVVLRR-------GPVIEHL-- 345
+ P PYAP + +G D G + + L G +
Sbjct: 60 DGYNSDVWPDWKPYAPRPLGNRPVWVGADPTGTGDNGDGLGLVVASPPAVSGGKFRIIET 119
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN-NTGARTCDYLEM-------LGYHVYRV 397
+I + ++Y +I ID TGA + + L Y +
Sbjct: 120 IQLRGMAFEKQAEEIKRITQRYNVQSITIDGTGGTGAAVHELVVKFFPAANLLNYSA-PL 178
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
L RN R E + H LI + ++K + +G + ES
Sbjct: 179 KRMMIMKMLMLIRNGRFEYDAGL-----------HKPLITSFMTIKK-VQTQSGIITYES 226
Query: 458 KRVKGAKSTDYSD 470
RV+G D+ D
Sbjct: 227 SRVRGL---DHGD 236
>gi|186895208|ref|YP_001872320.1| hypothetical protein YPTS_1896 [Yersinia pseudotuberculosis PB1/+]
gi|186698234|gb|ACC88863.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
PB1/+]
Length = 587
Score = 46.3 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 15/133 (11%)
Query: 311 CPDPYAPLIMGCDIAEEGGDN--TVVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLV 364
P P+ +G D A G V+ + G L W D + I +
Sbjct: 403 RPFGDRPVWIGYDPASTGDSAGCAVIAPPVVAGGKFRVLERHQWKGMDFADQASNIKKIT 462
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL 424
E+Y I ID G + + + + + + +L K + +
Sbjct: 463 ERYNVTYIGIDDTGLGRSVTQLVRQ----FFPAVNA-----IHYSLEMKADLIYKAKNII 513
Query: 425 EFASLINHSGLIQ 437
+ L +G I
Sbjct: 514 QGGRLEFDAGCID 526
>gi|238786939|ref|ZP_04630739.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
gi|238724727|gb|EEQ16367.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
Length = 587
Score = 46.3 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 15/133 (11%)
Query: 311 CPDPYAPLIMGCDIAEEGGDN--TVVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLV 364
P P+ +G D A G V+ + G L W D + I +
Sbjct: 403 RPFGDRPVWIGYDPASTGDSAGCAVIAPPVVAGGKFRVLERHQWKGMDFADQASNIKKIT 462
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL 424
E+Y I ID G + + + + + + +L K + +
Sbjct: 463 ERYNVTYIGIDDTGLGRSVTQLVRQ----FFPAVNA-----IHYSLEMKADLIYKAKNII 513
Query: 425 EFASLINHSGLIQ 437
+ L +G I
Sbjct: 514 QGGRLEFDAGCID 526
>gi|145708080|ref|YP_001165255.1| terminase [Ralstonia phage phiRSA1]
gi|139003869|dbj|BAF52383.1| terminase [Ralstonia phage phiRSA1]
Length = 593
Score = 46.3 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 7/82 (8%)
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRR-----GPVIEHL--FDWSKTDLRTTNNKISG 362
P P P+ +G D GGD+ +V+ G L + D I
Sbjct: 407 PRPFGNRPVWVGYDPNGGGGDSAALVVVAPPLVPGGKFRVLERHQFRGIDYEEQAGAIRR 466
Query: 363 LVEKYRPDAIIIDANNTGARTC 384
+ E+Y + ID G
Sbjct: 467 VAERYDVAYVGIDRTGIGDAVF 488
>gi|80159854|ref|YP_398598.1| conserved phage-related protein [Clostridium phage c-st]
gi|78675444|dbj|BAE47866.1| conserved phage-related protein [Clostridium phage c-st]
Length = 580
Score = 46.3 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 51/374 (13%), Positives = 106/374 (28%), Gaps = 50/374 (13%)
Query: 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR 105
+ +E + + + + RG+GK+ L+A +
Sbjct: 49 YYRKYIDKFCIEVLGLKLYLFQRLILRAMARNQYVMLICCRGLGKSWLSAVFFVASCILY 108
Query: 106 PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
G+ + Q + + + K L + + P +D +
Sbjct: 109 KGLKCGIASGQGQQARNVI---IQKVKGELAKNPSIAREI--VFPIKTGADDCVVNFRNG 163
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT--------- 216
S+ + + + D G + ++ DE D + IL +T
Sbjct: 164 SEIRAIV---LGRNQGD---GARSWRFHYLLVDECRLVSDKVINTILIPMTKTKRAVAIH 217
Query: 217 -ERNANRFWIMTSNPRRLSGKFYEIFN----KPLDDWKRFQIDTRTVE------GIDPSF 265
+ I S+ + Y+ F K + + + D
Sbjct: 218 HNKREKGKVIFISSAYLKTSDLYKRFKYFCDKMSSGANNYFVCSLDYRVGIEAGIFDQDD 277
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA--LNREPCPDPYA---PLIM 320
+ + + + + E G F +S+ P A L R P I+
Sbjct: 278 IDEERNKPDMTIEEFQYEYEGIFVGSSGESYFPYETTTPARVLGRGEITQPKKSKSEYII 337
Query: 321 GCDIAEEGGDNT------VVVLR---RGPVIEHLFDWSKTDLRTTNNKISGLVEKYR--- 368
D+A G ++ V+ L+ G ++ + + + + L E Y
Sbjct: 338 THDVAISGASDSDNACTHVIKLKPKPNGTYVKEVVYTKTHNGISLPEQRDFLRELYHLKF 397
Query: 369 --PDAIIIDANNTG 380
I+ID G
Sbjct: 398 PNAVKIVIDMRGNG 411
>gi|163849591|ref|YP_001637634.1| diguanylate cyclase [Methylobacterium extorquens PA1]
gi|163661196|gb|ABY28563.1| diguanylate cyclase [Methylobacterium extorquens PA1]
Length = 1428
Score = 46.3 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 70/229 (30%), Gaps = 26/229 (11%)
Query: 83 SAGRGI--GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
S+G G G+ WL + P + Q TT W E+ + +
Sbjct: 644 SSGWGTYTGQPESAYIGYGWLDTVHPD---------DRQRVTTTWREIFASQAAGSFEFR 694
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY-SEERPDTFVGHHNTYGMAIINDE 199
+ + + L + G + T + S + + Y +A++
Sbjct: 695 ALCRDGAYRWTLTRAVPLKDASGQVQEWVGTDGDIHESRQASEAIRLQEERYRLAMLA-- 752
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
T D I LG T ++ + + + + W + +I E
Sbjct: 753 ---TQDAIWDWDLGADTAEWSDGAYRLFG--------YDDAERADTGAWWKSKIHPDDRE 801
Query: 260 GIDPSFHEGIIARYGLDSDVTR-VEVCGQFPQQDIDSFIPLNIIEEALN 307
+ S I ++ SD R G + + F+ + +AL
Sbjct: 802 RVTTSIKHIIESQEHRWSDEYRFARADGSYAEVTDCGFVIRDTEGQALR 850
>gi|51596194|ref|YP_070385.1| gpP phage P2 terminase [Yersinia pseudotuberculosis IP 32953]
gi|170024552|ref|YP_001721057.1| hypothetical protein YPK_2327 [Yersinia pseudotuberculosis YPIII]
gi|51589476|emb|CAH21098.1| similar to gpP phage P2 TERMINASE [Yersinia pseudotuberculosis IP
32953]
gi|169751086|gb|ACA68604.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
YPIII]
Length = 587
Score = 46.3 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 15/133 (11%)
Query: 311 CPDPYAPLIMGCDIAEEGGDN--TVVV--LRRGPVIEHL--FDWSKTDLRTTNNKISGLV 364
P P+ +G D A G V+ + G L W D + I +
Sbjct: 403 RPFGDRPVWIGYDPASTGDSAGCAVIAPPVVAGGKFRVLERHQWKGMDFADQASNIKKIT 462
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL 424
E+Y I ID G + + + + + + +L K + +
Sbjct: 463 ERYNVTYIGIDDTGLGRSVTQLVRQ----FFPAVNA-----IHYSLEMKADLIYKAKNII 513
Query: 425 EFASLINHSGLIQ 437
L +G I
Sbjct: 514 HGGRLEFDAGCID 526
>gi|169634245|ref|YP_001707981.1| phage-related terminase, ATPase subunit (GPP-like) [Acinetobacter
baumannii SDF]
gi|169153037|emb|CAP02098.1| phage-related terminase, ATPase subunit (GPP-like) [Acinetobacter
baumannii]
Length = 594
Score = 46.3 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 51/175 (29%), Gaps = 26/175 (14%)
Query: 238 YEIFNKPL----DDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
++ + W++ I G D + + Y + + QF
Sbjct: 322 HDALKRGRYCEDKIWRQIVTILDAENGGCDLFDIDELRFEYSAEE--FANLLMCQFIDDG 379
Query: 293 IDSFIPLNIIEEALNR------------EPCPDPYAPLIMGCDIAEEGGDNTVVVL---- 336
S PLNI++ + P P+ +G D AE G +VV+
Sbjct: 380 A-SIFPLNILQACMVDSWEAWADDYKPFHARPLASRPVWVGYDPAETGDSAGLVVVAPPS 438
Query: 337 --RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
I + D + +I + +Y I +D G +
Sbjct: 439 VANGKFRILERHQFRGMDFKAQAEQIRQITLRYNVTYIGLDTTGMGTGVAQLVRQ 493
>gi|33594269|ref|NP_881913.1| putative phage terminase [Bordetella pertussis Tohama I]
gi|33564344|emb|CAE43647.1| putative phage terminase [Bordetella pertussis Tohama I]
gi|332383682|gb|AEE68529.1| putative phage terminase [Bordetella pertussis CS]
Length = 425
Score = 46.3 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 70/440 (15%), Positives = 131/440 (29%), Gaps = 64/440 (14%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKW 131
P F+ + AG G GKT + + P ++ A + Q++ + EV+
Sbjct: 15 PHKFRAFV-AGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHD 73
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + +CR S E+P VG
Sbjct: 74 WGLAAKINESNKEVHLFAGRKYRGT--------------VICR--SMEKPGDIVGFKIGK 117
Query: 192 GM-----AIINDEASGTPDVINLGILGFL--TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G+ + D+A+ + I+ L T +T+ P Y+ F K
Sbjct: 118 GLIDELDVMKADKAA----LAWRKIIARLRHTAPGLLNGVDVTTTPEG-FKFVYQQFVKQ 172
Query: 245 LDD-------WKRFQIDTRTV-EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + + Q T + + + + A Y + + GQF S
Sbjct: 173 VRERPELAALYGLVQASTYENGKNLPEDYIPSLRASY--PPQLIAAYLRGQFTNLTSGSV 230
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
N + + +P+ L +G D TV V+R G + D
Sbjct: 231 YA-NFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEM 289
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDY---------LEMLGYHVYRVLGQKRAVDLE 407
+ + + + I + +G T L G+ V RV + +V
Sbjct: 290 ARMLKERFKD-KGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTV-RVNSRNPSVKDR 347
Query: 408 FCRNRRTELHVK-MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKST 466
L+ + WL +N ++L+ + G E + G
Sbjct: 348 INAVNGMLLNDEGARRWL-----VNTDRCPTLTEALEQQVYDKNG----EPDKSTGHDHP 398
Query: 467 DYSDGLMYTFAENPPRSDMD 486
+ + G + M
Sbjct: 399 NDAQGYFLVHRYPITPTGMS 418
>gi|224984406|ref|YP_002641809.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
gi|224497005|gb|ACN52640.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
Length = 450
Score = 46.3 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 58/332 (17%), Positives = 105/332 (31%), Gaps = 51/332 (15%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-----TRPGIS 109
Q E + +++H + V +F G I++ GKT L ++L++ + +
Sbjct: 49 QKEVLFDIESHDYSKV------IFSGGIAS----GKTFLASYLLIKKLIENKSLYERDTN 98
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ NS L T ++ K + + + + L I
Sbjct: 99 NFIIGNSIGLLMTNTIKQIEKICG------FLGIDYQKKKSGESFCKIAGLELNI----- 147
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
Y D F I +EA+ L ++ L R I +N
Sbjct: 148 ------YGGRNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVIKRL--RKGKSIIIFDTN 199
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQF 288
P + F + + D +K + T F E Y + V G++
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHFPAYKARVLYGEW 258
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVLRRGPVIEHLFD 347
+ F E N++ IM D A GGDNT + + E +
Sbjct: 259 ILNESALF-----NEMIFNQDYEFKSP---IMYIDPAFSVGGDNTAICVLERTF-EKFYA 309
Query: 348 WSKTDLRTTN-----NKISGLVEKYRPDAIII 374
+ D + + I L+E + + + I
Sbjct: 310 YIYQDQKPVSDSLMLGSIQVLIENFNVNTVYI 341
>gi|293368016|ref|ZP_06614649.1| large terminase subunit [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291317838|gb|EFE58251.1| large terminase subunit [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 421
Score = 46.3 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 41/335 (12%), Positives = 103/335 (30%), Gaps = 40/335 (11%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
E++ H + + GRG GK++ + ++ + R ++ + + ++
Sbjct: 9 ELLPKHFHSLWKATKDRKKLNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDN 67
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
L T+++ ++ + H F+++ + + + R
Sbjct: 68 TLATSVFEQIKWAIEEQKVSHLFKVKVS------------PMEITYVPRGNRIIFRGA-- 113
Query: 179 ERPDTFVGHHNTY---GMAIINDEASG-TPDVINLGILGFL---TERNANRFWIMTSNPR 231
+ P+ ++ + I + A T D + L + + + NP
Sbjct: 114 QNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPP 173
Query: 232 RLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ + YE +P + + I F + + + R E G+
Sbjct: 174 KRKQSWVNKKYETSFQPDNTFVHHS-TYLDNPFISKQFIQEAESTKERNELRYRWEYMGE 232
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIE 343
+P N ++ + + + D D V ++ +I
Sbjct: 233 AIGS---GVVPFNNLQIEKIPDELYKSFDNIRNAVDFG-YATDPLAFVRWHYDKKKRIIY 288
Query: 344 HLFDWSKTDL--RTTNNKISGLVEKYRPDAIIIDA 376
+ + + R N + Y+ D I D+
Sbjct: 289 AVDEHYGVQISNREFANWLKR--RGYQSDEIFADS 321
>gi|229589112|ref|YP_002871231.1| terminase ATPase subunit [Pseudomonas fluorescens SBW25]
gi|229360978|emb|CAY47838.1| terminase, ATPase subunit [Pseudomonas fluorescens SBW25]
Length = 585
Score = 46.3 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 22/161 (13%)
Query: 248 WKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
W++ I G D + + Y D++ + + QF S PL +++ +
Sbjct: 328 WRQIVTILDAEDRGCDLFDLDELRQEY--DAEAFQNLLMCQFIDDGA-SIFPLAMLQPCM 384
Query: 307 NR------------EPCPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEHLFD--W 348
P + +G D AE G +VV + G L +
Sbjct: 385 VDSWDLWAQDYKPFAARPFGDRQVWVGYDPAESGDSAGLVVIAPPMVPGGKFRVLEKHQF 444
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
D I + ++Y I ID G+ ++
Sbjct: 445 RGMDFAAQAEAIRQVTKRYWVTYIGIDITGMGSGVAQLVKQ 485
>gi|219723069|ref|YP_002474484.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219693000|gb|ACL34209.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|312147710|gb|ADQ30370.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 46.3 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHRQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYINNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|291517493|emb|CBK71109.1| Phage terminase large subunit [Bifidobacterium longum subsp. longum
F8]
Length = 477
Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 57/376 (15%), Positives = 105/376 (27%), Gaps = 60/376 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISV 110
WQ + ++ A + + + + + R GKT W+ + + PG+ +
Sbjct: 37 DVWQRQINRIILAKSADGFWSA-----RNTVLSIPRQTGKTYDIGWVAIHRAARTPGMRI 91
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH---CSLGIDSK 167
+ A + S++ + + D H + G +
Sbjct: 92 VWTA---------------QHFSVIKDTFESLCAIVLRPEMSGLVDPDHGISLAAGKEEI 136
Query: 168 HYSTMCRT-YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ R + G ++ DEA D +L R N I
Sbjct: 137 RFRNGSRIFFRARERGALRGV--KKIALLVIDEAQHLSDSAMASMLPT-QNRAYNPQTIY 193
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDT---------RTVEGIDPSFHEGIIARY---- 273
P E F + D + + + R + +D Y
Sbjct: 194 MGTPPGPRDNG-EAFTRLRDKTRAGRTHSTLYVEFAADRDADPLDREQWRKANPSYPAHT 252
Query: 274 ----------GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
L D R E G + + + I EEA P + G D
Sbjct: 253 SDESIANLWENLTGDDFRREALGIWDEHALSRAIDRRQWEEATIDARRP--GGVMSFGID 310
Query: 324 IAEEGGDNTV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK--YRPDAIIIDANN 378
+ T+ + G L ++ T+ T L++K + A++ID +
Sbjct: 311 MNPTRTRLTIGACMRYDDGTAHIELAEYRDTNHDGT-MWAVNLIDKVWEQTAALVIDGQS 369
Query: 379 TGARTCDYLEMLGYHV 394
L G V
Sbjct: 370 PATALLPDLAEAGVTV 385
>gi|260427953|ref|ZP_05781932.1| phage DNA Packaging Protein [Citreicella sp. SE45]
gi|260422445|gb|EEX15696.1| phage DNA Packaging Protein [Citreicella sp. SE45]
Length = 409
Score = 46.3 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 75/424 (17%), Positives = 134/424 (31%), Gaps = 70/424 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTT-LWAEVSKW 131
I GRG GKT A W+ + G V + + Q++ ++ E S
Sbjct: 16 IMGGRGAGKTRAGA---EWVRACVEGAMPLSPGRCKRVALIGETMDQVREVMVFGE-SGI 71
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
++ P E Q+ W + +S P+ G
Sbjct: 72 MNCSPPDRRPEWQATR-RCLVWPN--------------GAEAMVFSAHDPEGLRGPQFD- 115
Query: 192 GMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
A DE + + L + +T+ P R G E+ P
Sbjct: 116 --AAWVDELAKWKKARETWDMLQFAL-RLGEHPQVCVTTTP-RNVGILKELLELPSTVVT 171
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
R + + SF E + ARYG +S + R E+ G + +++ A
Sbjct: 172 RAK-TEANRANLAESFLEEVRARYG-NSRLARQELDGILVTDVDGALWTGEMLDRAQALA 229
Query: 310 PCPDPYAPLIMGCDI-AEEG--GDNTVVVLR--------RGPVIEHLFDWSKTDLRTTN- 357
P P + +++ D A +G D +V+ + L D S + T
Sbjct: 230 P-PATFDRIVVAVDPPAGDGKASDACGIVVAGVVCEGPPQAWRAWVLEDASVQGVSPTGW 288
Query: 358 -NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
+ E+++ D ++ + N GA L + V R V + R E
Sbjct: 289 AQAAAAAYERWQADRVVAEVNQGGAMVETVLRQVSPQV-----PLRKVHATRGKAARAEP 343
Query: 417 HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
+ + +GL + + ++ + G +G S D D L++
Sbjct: 344 VAALYEQGRVGHAAGLAGLEEQMG-----LMTSAGY--------QGQGSPDRVDALVWAL 390
Query: 477 AENP 480
E
Sbjct: 391 TELV 394
>gi|111074104|ref|YP_709233.1| hypothetical protein BAPKO_4029 [Borrelia afzelii PKo]
gi|110891215|gb|ABH02376.1| hypothetical protein BAPKO_4029 [Borrelia afzelii PKo]
Length = 450
Score = 45.9 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F ++I ++ + P I D A GGDNT + +
Sbjct: 265 IFTQIDITQDYVFTSP--------IAYLDPAFSIGGDNTALCV 299
>gi|148807391|gb|ABR13464.1| predicted ATPase terminase subunit [Pseudomonas aeruginosa]
Length = 593
Score = 45.9 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 22/161 (13%)
Query: 248 WKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
W++ I G D E + Y D++ + + QF S PL +++ +
Sbjct: 336 WRQIVTILDAEARGCDLFDIEELRLEY--DAEAFQNLLMCQFVDDGA-SIFPLTMLQPCM 392
Query: 307 NR------------EPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDW 348
P + +G D AE G +VV+ G L +
Sbjct: 393 VDSWDLWSEDYKPFALRPFGDRQVWLGYDPAETGDTAGLVVVAPPAVPGGKFRVLERHQF 452
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
D I + ++Y I +D G+ +
Sbjct: 453 RGKDFAEQAEFIRKVTQRYWVTYIGVDTTGMGSGVAQLVRQ 493
>gi|170718356|ref|YP_001783582.1| hypothetical protein HSM_0231 [Haemophilus somnus 2336]
gi|168826485|gb|ACA31856.1| protein of unknown function DUF264 [Haemophilus somnus 2336]
Length = 595
Score = 45.9 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 17/139 (12%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---------REPCPDPYA 316
+ + +Y + + + + F +++ A+N P P
Sbjct: 358 LDQLKQKY--SALAFKQLFECHWIDDEDSIFTISKLLKCAVNINKWADFQPDTPRPFGDR 415
Query: 317 PLIMGCDIAEEGGDNTVVV----LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPD 370
+ G D A + V+ + G L + W R +I L ++Y
Sbjct: 416 EVWGGYDPAHSSDGASFVIVAPPINEGEKFRVLARYQWFGLSYRWQAEQIKKLYQQYNFS 475
Query: 371 AIIIDANNTGARTCDYLEM 389
I IDAN G + ++
Sbjct: 476 YIGIDANGVGQGVFEMIQE 494
>gi|224591489|ref|YP_002640832.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|224554623|gb|ACN56003.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
Length = 450
Score = 45.9 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKIDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|221641598|ref|YP_002527783.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|225622087|ref|YP_002725040.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|221237550|gb|ACM10383.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
72a]
gi|225546885|gb|ACN92880.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 450
Score = 45.9 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKIDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|295096346|emb|CBK85436.1| Terminase-like family [Enterobacter cloacae subsp. cloacae NCTC
9394]
Length = 435
Score = 45.9 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 51/317 (16%), Positives = 99/317 (31%), Gaps = 42/317 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AG G GKT + + M P I+ A + Q++ + + + F+
Sbjct: 26 AGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQIRDIFYPTI--------EEVAFDW 77
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE---- 199
+ + + + Y S E+P + VG M DE
Sbjct: 78 GLSVIINEGNKEVHFY-----EGRRYRGTTICRSMEKPGSIVGFKIGNAM---VDELDVM 129
Query: 200 ASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKP-------LDDWKRF 251
A+ I+ + + + R I + Y+ F K +
Sbjct: 130 AAAKAQQAWRKIIARMRYKVDGLRNGIDVTTTPEGFKFVYQQFVKAVREKPELSALYGLI 189
Query: 252 QIDTRTV-EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T + + P + +++ Y ++ + + G+F + + I + N
Sbjct: 190 QASTFDNAKNLPPDYISSLLSSY--PDELIQAYLRGKFTNLNSGT-IYHTFNRKLNNCSD 246
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT-DLRTTNNKISGLVEKY-- 367
PL +G D G +V ++R + + + K D +I +Y
Sbjct: 247 EIQDGDPLFIGMDF-NVGKMAAIVHVKRNGLPRAVRELVKVYDTPAMIKRIQEEFWRYED 305
Query: 368 ------RPDAIIIDANN 378
R I DA+
Sbjct: 306 GRYVKSREIYIYPDASG 322
>gi|226315871|ref|YP_002776346.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
gi|226202080|gb|ACO37753.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
Bol26]
Length = 450
Score = 45.9 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHRQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|148724503|ref|YP_001285469.1| DNA packaging protein [Cyanophage Syn5]
gi|145588148|gb|ABP87967.1| DNA packaging protein [Synechococcus phage Syn5]
Length = 574
Score = 45.9 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 58/398 (14%), Positives = 117/398 (29%), Gaps = 96/398 (24%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISV-ICLANSET--------Q--LKTTLWAE 127
+ ISA RG+GK+ + A VLW++ P + + A+ E Q + W
Sbjct: 47 RLQISAFRGVGKSWITAAFVLWVLFVDPDRKIMVISASKERADNFSIFCQKLILDIEW-- 104
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER---PDTF 184
+S ++ W + S + PA + S+GI + + + P
Sbjct: 105 LSHLRPRDSDQRWSRI-SFDVGPAKPHQAPSVKSVGITGQMTGSRAHLMVFDDVEVPANS 163
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI---- 240
+ + E+ + + +A ++ P+ + ++
Sbjct: 164 ATDMQREKLLQLVSESESI----------LVPDDDARIMFL--GTPQSTFTIYRKLAERS 211
Query: 241 ---------FNKPLDDWK-----RFQIDTRTVEGIDPSFHEGIIARY---GLDSDVTRVE 283
+ + L ++ + D + + +S + R
Sbjct: 212 YRPFVWPARYPRDLSKYEGLLAPQLVADLEKDPELTWKPTDTRFNELNLMERESAMGRSN 271
Query: 284 VCGQF---PQQDIDSFIPL-----------NIIEEA---------LNREPCPD------- 313
QF PL EA + +E P
Sbjct: 272 FMLQFMLDTSLSDAEKFPLKFQDLIVTPLGAECAEAYAWSADPRYMRKELNPVGLPGDRF 331
Query: 314 -----------PYAPLIMGCDIAEEGGDNTV-VVLRRGP---VIEHLFDWSKTDLRTTNN 358
PY+ I+ D + G D TV VVL + + + + T +
Sbjct: 332 YGPMYIDEGIVPYSETIVSVDPSGRGTDETVAVVLSQANGYIFVRDMKAFRDGYSDETLS 391
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
I L ++Y+ +++++N G L
Sbjct: 392 DIVRLGKRYKASKLLVESN-FGDGMITELFKRHISQMG 428
>gi|319761996|ref|YP_004125933.1| hypothetical protein Alide_1284 [Alicycliphilus denitrificans BC]
gi|317116557|gb|ADU99045.1| hypothetical protein Alide_1284 [Alicycliphilus denitrificans BC]
Length = 633
Score = 45.9 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 55/186 (29%), Gaps = 25/186 (13%)
Query: 231 RRLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
RLSG F W+ I G D + + Y + F
Sbjct: 359 DRLSGG----FTGEDRVWRNIVTILDALAGGCDLFDLDELRLEY--SDAEFANLLMCGFV 412
Query: 290 QQDIDSFIPLNIIEEALNRE-----------PCPDPYAPLIMGCDIAEEGGDNTVVVL-- 336
S PL++++ + P + P+ +G D + G +VVL
Sbjct: 413 DDSF-SVFPLSMLQACMVDSWELWADFKPFSQRPFGWMPVWVGYDPSHTGDSAGLVVLAP 471
Query: 337 --RRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
+ G + L + D I + ++Y A+ +D G ++
Sbjct: 472 PAKPGGQLRVLHTQQFKGMDFEAQAKAIKEITQRYNVAAMTLDTTGIGQGVFQLVQKFYP 531
Query: 393 HVYRVL 398
+
Sbjct: 532 AARGIN 537
>gi|270307731|ref|YP_003329789.1| hypothetical protein DhcVS_300 [Dehalococcoides sp. VS]
gi|270153623|gb|ACZ61461.1| hypothetical protein DhcVS_300 [Dehalococcoides sp. VS]
Length = 457
Score = 45.9 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 44/291 (15%), Positives = 85/291 (29%), Gaps = 45/291 (15%)
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG 213
++++ H G + S E VG NT + + DEA
Sbjct: 87 FTEIYHTEGGYIIRLNQARAVFLSAEPSANVVG--NTAHLLLEVDEAQDVSKEKYTKEFK 144
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRFQIDTRTVEGIDPSFHE 267
+ N I+ + EI + ++ + F+ D V +P++
Sbjct: 145 PM-GATTNVTTILYGTTWDNASLLEEIKRQNIEKEQKDGLKRHFRYDWEEVAAHNPAYLA 203
Query: 268 GIIARY---GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC---PDPYAPLIMG 321
++ G + + + P ++ + PC P+ + G
Sbjct: 204 YALSEKDRLGENHPLFLTQYR-LLPVSGGGGMFSTEQLDLLKSSHPCQIYPENGKVYVAG 262
Query: 322 CDIAEE-----GGDNTVVVLRRGPVIEHLFD----------------------WSKTDLR 354
D+A E G V LRR + + + W
Sbjct: 263 LDLAGEDGQIDGDLPATVNLRRDSSVLTIAELDYTFAKAPCNLPQLKLVCHYSWQGARHA 322
Query: 355 TTNNKISGLVEK-YRPDAIIIDANNTGARTCDYLEM-LGYHVYRVLGQKRA 403
K+ L+ K ++ + +DA G +L LG + Q +
Sbjct: 323 LLYEKLVELLGKVWKCRKVAVDATGLGQPVASFLRESLGSRILPFAFQPSS 373
>gi|221065290|ref|ZP_03541395.1| protein of unknown function DUF264 [Comamonas testosteroni KF-1]
gi|220710313|gb|EED65681.1| protein of unknown function DUF264 [Comamonas testosteroni KF-1]
Length = 632
Score = 45.9 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 21/138 (15%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------------REPCPD 313
++ Y D +F F L +++ + P
Sbjct: 393 LAELLEEY--PDDEFSNLFRCEFIDDSNSQF-TLQMMQACMVDSWEAWADDFKPLAARPF 449
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLF--DWSKTDLRTTNNKISGLVEKY 367
+ P+ +G D + G +VV+ G L + D I + E+Y
Sbjct: 450 AWQPVWVGYDPSFTGDTAALVVIAPPKVPGGKFRLLHRQQFRGADFEAQAEYIRSITERY 509
Query: 368 RPDAIIIDANNTGARTCD 385
+ ID G
Sbjct: 510 NVTFMGIDTTGLGQGVYQ 527
>gi|206563738|ref|YP_002234501.1| putative phage terminase large subunit [Burkholderia cenocepacia
J2315]
gi|198039778|emb|CAR55749.1| putative phage terminase large subunit [Burkholderia cenocepacia
J2315]
Length = 436
Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 52/347 (14%), Positives = 98/347 (28%), Gaps = 70/347 (20%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFWIMTSNPR- 231
+S E G ++ DE + T D I + + S P
Sbjct: 99 WSLESGLFGRGREYD---LLLFDETAFTKDGTLEIYRDAISPVVATRPGFRMFSFSTPLV 155
Query: 232 -RLSGKFYEIFNKPLDDW------------KRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
LS FY + W K + +D + G + S
Sbjct: 156 MDLSNFFYALHEHKDYKWNPKIGADNYERFKVHHRPSWCNPLVDDKWLRGEYRKRSALS- 214
Query: 279 VTRVEVCGQFPQQDIDSFIP---------------LNIIEEALNREPCPDPYAPLIMGC- 322
R E+ G+F S P +I+ A+ D A + +G
Sbjct: 215 -WRQEIEGEFVDWSGISLFPNLNKPVDPHPRYDAVFAVIDTAMKSGIEHDGTACMWLGYS 273
Query: 323 DIAEEGGDNTVVVLRRGPVIEHLFDWSKTD----LRTTNNKISGLVEKYRPDAI-IIDAN 377
D+ G DN ++ + L + D + ++ + ++ + I+
Sbjct: 274 DV--FGPDNLHIL---DWEVTSLDASGQYDWLKRILNHGEALARHYKSHQGFTVAYIEDK 328
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEF---------CRNRRTELHVKMADWLEFAS 428
+G + G V + + A+ + NR +H +EF +
Sbjct: 329 QSGIVLLQQGKESGLPVEAINSKFTALGKDERMRICVDPVHANRVKFVHESFNKLVEFKN 388
Query: 429 LINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ L Q L + ++ D +D Y+
Sbjct: 389 ESKNHALKQILSYR-------------IGDKEAYKRADDLADCFAYS 422
>gi|146310689|ref|YP_001175763.1| hypothetical protein Ent638_1030 [Enterobacter sp. 638]
gi|145317565|gb|ABP59712.1| hypothetical protein Ent638_1030 [Enterobacter sp. 638]
Length = 402
Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 48/284 (16%), Positives = 84/284 (29%), Gaps = 32/284 (11%)
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L + P I K+ + + + G ++ DEA+ T
Sbjct: 42 DKLVEYLEPLIKSSSRSEKRILLKNGGKIDFWVTNDNKLAGRGREYD---LVLIDEAAFT 98
Query: 204 PDVINLGILGFL----TERNANRFWIMTSNPRRLS--GKFYEIFNKPLDDWKRFQIDTRT 257
L + T + S P + FY I K + T +
Sbjct: 99 KSPEMLAEIWAKSIKPTLLTTKGRAYIFSTPDGVDEDNFFYAICRKKELGFFEHYAPTSS 158
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
+ P E R + V R E +F D+ ++ E P+
Sbjct: 159 NPFVPPEELEK--ERLSCEPRVFRQEFLAEFVDWSADALFDVSKWLEDGKPVEFPEMCMA 216
Query: 318 LIMGCDIAEEGG---DNTVVVL-----RRGPVIEHLFDWSKTDLR---------TTNNKI 360
+ D A +GG D T VV R G + DW + + +++
Sbjct: 217 VFAVMDTAVKGGIEHDGTAVVYYAIDTRPGRERLTILDWDVVQIDGALLEVWMPSVFDRL 276
Query: 361 SGL----VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
+ L V + I+ + G+ E LG+ V ++
Sbjct: 277 NELSGLCVAVNGSLGVFIEDASMGSILLQKGESLGWQVNKIESA 320
>gi|145335142|ref|NP_172040.2| chr31 (chromatin remodeling 31); ATP binding / DNA binding /
helicase/ nucleic acid binding [Arabidopsis thaliana]
gi|332189724|gb|AEE27845.1| chromatin remodeling 31 [Arabidopsis thaliana]
Length = 1410
Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 13/155 (8%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAG-----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + ++ + F+ + G G GKT L + + P
Sbjct: 827 QQEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLQCFPD 886
Query: 108 ISVICLANSETQLKTTLWA-EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ +A + L WA E KW +P + + + ++ + S
Sbjct: 887 CKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGKENSAALGLLMQKNATARS 943
Query: 167 KHYSTMCRTYSEERPDTFVG--HHNTYGMAIINDE 199
+ M + YS + + +G ++ +A + DE
Sbjct: 944 NNEIRMVKIYSWIKSKSILGISYNLYEKLAGVKDE 978
>gi|110740804|dbj|BAE98499.1| hypothetical protein [Arabidopsis thaliana]
Length = 1410
Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 13/155 (8%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAG-----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + ++ + F+ + G G GKT L + + P
Sbjct: 827 QQEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLQCFPD 886
Query: 108 ISVICLANSETQLKTTLWA-EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ +A + L WA E KW +P + + + ++ + S
Sbjct: 887 CKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGKENSAALGLLMQKNATARS 943
Query: 167 KHYSTMCRTYSEERPDTFVG--HHNTYGMAIINDE 199
+ M + YS + + +G ++ +A + DE
Sbjct: 944 NNEIRMVKIYSWIKSKSILGISYNLYEKLAGVKDE 978
>gi|8778726|gb|AAF79734.1|AC005106_15 T25N20.14 [Arabidopsis thaliana]
Length = 1465
Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 13/155 (8%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAG-----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + ++ + F+ + G G GKT L + + P
Sbjct: 882 QQEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLQCFPD 941
Query: 108 ISVICLANSETQLKTTLWA-EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ +A + L WA E KW +P + + + ++ + S
Sbjct: 942 CKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDFTGKENSAALGLLMQKNATARS 998
Query: 167 KHYSTMCRTYSEERPDTFVG--HHNTYGMAIINDE 199
+ M + YS + + +G ++ +A + DE
Sbjct: 999 NNEIRMVKIYSWIKSKSILGISYNLYEKLAGVKDE 1033
>gi|319407675|emb|CBI81323.1| phage-related protein [Bartonella sp. 1-1C]
Length = 442
Score = 45.9 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 9/193 (4%)
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNAN--RFWIMTSNPRRLSGKFYEIFN-KPLDD 247
+ DEA D ++ L E +T NP R + + F +
Sbjct: 122 RILLCWVDEAEPVTDAAWQILIPTLREEGKEWHSELWVTWNPCRENAAVEKRFRFTEDPN 181
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
K +I+ R + A + + G++ Q ++ ++E
Sbjct: 182 IKGVEINWRDNPKFPAKLNRDRKADLEQRPEQYQHIWEGEYLQAMQGAYYQKLLLEAEQE 241
Query: 308 REPCPDPYAPLI---MGCDIAEEG--GDNTVVVLRR-GPVIEHLFDWSKTDLRTTNNKIS 361
P PLI + DI G D T + + + + D+ + + + I
Sbjct: 242 GRITIVPRDPLIQVKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIG 301
Query: 362 GLVEKYRPDAIII 374
+ +K A+++
Sbjct: 302 WVCQKGYEKALMV 314
>gi|224535035|ref|ZP_03675589.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
gi|224513696|gb|EEF84036.1| phage terminase, large subunit, pbsx family [Borrelia spielmanii
A14S]
Length = 379
Score = 45.5 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITQDYVFTSP--------IAYLDPAFSIGGDNTALCV 299
>gi|216968428|ref|YP_002333693.1| phage terminase, large subunit, pbsx family [Borrelia afzelii
ACA-1]
gi|216752682|gb|ACJ73366.1| phage terminase, large subunit, pbsx family [Borrelia afzelii
ACA-1]
Length = 450
Score = 45.5 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITQDYVFTSP--------IAYLDPAFSIGGDNTALCV 299
>gi|99080898|ref|YP_613052.1| hypothetical protein TM1040_1057 [Ruegeria sp. TM1040]
gi|99037178|gb|ABF63790.1| DNA packaging protein Gp17 (Terminase) [Ruegeria sp. TM1040]
Length = 425
Score = 45.5 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 64/422 (15%), Positives = 115/422 (27%), Gaps = 77/422 (18%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ S G V + + Q++ + +
Sbjct: 33 ILGGRGAGKTRAGA---EWVRSQVEGAGPFGVGSARRVALVGETYDQVRDVM---IHGDS 86
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L P + +S P+ G
Sbjct: 87 GILACSP------------PDRRPEWRAGERRLLWPNGASAQAFSASDPEVLRGPQFD-- 132
Query: 193 MAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + L +T+ PR + + +
Sbjct: 133 -AAWVDELAKWRRAQEAWDMLQFAL-RLGTAPRVCVTTTPRNV--PLLKGLLQSPSTVTT 188
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ PSF + ARY S + R E+ G + +++ E R+
Sbjct: 189 HAPTEANSANLAPSFLSEVRARY-AGSRLARQELDGVLLADVDGALWSSDMLAEIQRRDT 247
Query: 311 CPDPYAPLIMGCDI---AEEGGDNTVVVL----RRGP----VIEHLFDWSKTDLRTTN-- 357
+++ D A +G D +++ +GP L D + L T
Sbjct: 248 P--RLDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISSWRAYVLADHTVQGLGPTGWA 305
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNRRTE 415
+ Y+ D ++ + N GA L + V K R E
Sbjct: 306 RAAIAARDAYKADRLVAEVNQGGALVGTVLRQVDPLVPFTPVHASKGKA-------ARAE 358
Query: 416 LHVKMADWLEFASLINHSGLIQN--LKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
+ + L + L + + + +G S D D L+
Sbjct: 359 PVAALYEQGRVHHAPGLQELEEQMCLMTAQGY---------------RGDASPDRVDALV 403
Query: 474 YT 475
+
Sbjct: 404 WA 405
>gi|11497347|ref|NP_051454.1| hypothetical protein BBN43 [Borrelia burgdorferi B31]
gi|6382368|gb|AAF07680.1|AE001581_22 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 45.5 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKIYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITDDYIFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|216997755|ref|YP_002333847.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
gi|216752400|gb|ACJ73182.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
Length = 450
Score = 45.5 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFAQINITQDYVFTSP--------IAYLDPAFSIGGDNTALCV 299
>gi|216969097|ref|YP_002333737.1| PBSX family phage termninase large subunit [Borrelia afzelii ACA-1]
gi|216753027|gb|ACJ73621.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
ACA-1]
Length = 450
Score = 45.5 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYDFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITQDYVFTSP--------IAYLDPAFSIGGDNTALCV 299
>gi|187939507|gb|ACD38655.1| terminase ATPase subunit [Pseudomonas aeruginosa]
Length = 593
Score = 45.1 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 22/161 (13%)
Query: 248 WKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
W++ I G D + + Y D++ + + QF S PL +++ +
Sbjct: 336 WRQIVTILDAEARGCDLFDIDELRLEY--DAEAFQNLLMCQFVDDGA-SIFPLTMLQPCM 392
Query: 307 NR------------EPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDW 348
P + +G D AE G +VV+ G L +
Sbjct: 393 VDSWDLWSEDYKPFALRPFGDRQVWLGYDPAETGDTAGLVVVAPPAVPGGKFRVLERHQF 452
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
D I + ++Y I +D G+ +
Sbjct: 453 RGKDFAEQAEFIRKVTQRYWVTYIGVDTTGMGSGVAQLVRQ 493
>gi|17313220|ref|NP_490600.1| predicted DNA-dependent ATPase terminase subunit [Pseudomonas phage
phiCTX]
gi|4063774|dbj|BAA36228.1| unnamed protein product [Pseudomonas phage phiCTX]
Length = 594
Score = 45.1 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 22/161 (13%)
Query: 248 WKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
W++ I G D + + Y D++ + + QF S PL +++ +
Sbjct: 336 WRQIVTILDAEARGCDLFDIDELRLEY--DAEAFQNLLMCQFVDDGA-SIFPLTMLQPCM 392
Query: 307 NR------------EPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDW 348
P + +G D AE G +VV+ G L +
Sbjct: 393 VDSWDLWSEDYKPFALRPFGDRQVWLGYDPAETGDTAGLVVVAPPAVPGGKFRVLERHQF 452
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
D I + ++Y I +D G+ +
Sbjct: 453 RGKDFAEQAEFIRKVTQRYWVTYIGVDTTGMGSGVAQLVRQ 493
>gi|260556808|ref|ZP_05829026.1| P-loop protein [Acinetobacter baumannii ATCC 19606]
gi|260410067|gb|EEX03367.1| P-loop protein [Acinetobacter baumannii ATCC 19606]
Length = 437
Score = 45.1 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 53/332 (15%), Positives = 93/332 (28%), Gaps = 70/332 (21%)
Query: 78 FKGAISAGRGIGKTTLNAW--------LVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
F+ A+ GR GKT L W +S + A + Q K W +
Sbjct: 31 FRDAV-CGRRFGKTFLAKAEMRRAARLAQKWNVSVEDE--IWYAAPTFKQAKRVFWKRLK 87
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ + P W + + + + R + D G
Sbjct: 88 QAI-----------------PPSWRFGKPNETECTITLKTGHVIRVVGLDNYDDLRG--- 127
Query: 190 TYGMAIINDEASGTPDVIN-LGILGFLTE--------RNANRFWIMTSNPRRLSGKFYEI 240
+ +I DE + + L+ + + P+ + Y+
Sbjct: 128 SGLFFLIIDEWADCKWAAWEEVLRPMLSTCKYTVNGVQRVGGNVLRIGTPKGYN-HCYDT 186
Query: 241 F-------NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ W + + E +AR +D R E F
Sbjct: 187 WMDGQNGREPDHKSWIYTSLQGGNIP-----ESEIDVARRKMDPKTFRQEYEASFETYQ- 240
Query: 294 DSFIPLNIIEEALNR-----EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW 348
+I R E L +G D + VV +R G + + ++
Sbjct: 241 ------GVIYYCFERTFNCTEKVVKEGDVLHIGMDFNVQKM-AAVVYVRDGEELYAVGEF 293
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIII--DANN 378
DL T I + KY+ II+ DA+
Sbjct: 294 --KDLFDTPAMIEAIKAKYQDHEIIVYPDASG 323
>gi|194436023|ref|ZP_03068125.1| putative conserved hypothetical protein [Escherichia coli 101-1]
gi|194424751|gb|EDX40736.1| putative conserved hypothetical protein [Escherichia coli 101-1]
Length = 595
Score = 45.1 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 35/238 (14%), Positives = 65/238 (27%), Gaps = 46/238 (19%)
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY---EIFNKPLDDWK 249
+ DE P +N G T ++ + T + + G + + + K K
Sbjct: 257 LYIDEYLWIPGFRRLNEVASGMATHKHWRITYFSTPSSKTHQGYPFWSGDEWRKGDPKRK 316
Query: 250 RFQIDT--------RTVE----------------GIDPSFHEGIIARYGLDSDVTRVEVC 285
+ + R G + + + RY +
Sbjct: 317 GVEFPSFDELRDGGRECPDGQWRYVVTLEDAIAGGFNLADINELRERYNET--AFNMLFM 374
Query: 286 GQFPQQDIDSF---------IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
F F + ++ E+ EP P + G D A G + T VVL
Sbjct: 375 CVFVDDKESVFKFDDLVRCGVDVSTWEDFHPEEPMPFGNREVWGGFDPARSGDNATFVVL 434
Query: 337 R------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ W + +I + +Y I ID G + ++
Sbjct: 435 APPLVSAERFRVLEKHHWRSMSFQFMAERIRSIKARYNMTFIGIDVTGLGYGVFELVQ 492
>gi|218964078|ref|YP_002455438.1| putative phage terminase, pbsx family protein [Borrelia afzelii
ACA-1]
gi|216752969|gb|ACJ73583.1| putative phage terminase, pbsx family protein [Borrelia afzelii
ACA-1]
Length = 450
Score = 45.1 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 55/289 (19%), Positives = 93/289 (32%), Gaps = 45/289 (15%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM----STRP-GIS 109
Q E + +++H + V +F G I++ GKT L ++L++ + S +
Sbjct: 49 QKEVLFDIESHTYSKV------IFSGGIAS----GKTFLASYLLIKKLIENKSFYEQDTN 98
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ NS L T ++ K L + + + L I
Sbjct: 99 NFIIGNSIGLLMTNTIKQIEKICGL------LGIDYQKKKSGQSFCKIAGLELNI----- 147
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
Y + D F I +EA+ L ++ L R I +N
Sbjct: 148 ------YGGKNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVMKRL--RKGKSIIIFDTN 199
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQF 288
P + F + + D +K + T F E Y + V G++
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHFPAYKARVLYGEW 258
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
+ F E N++ IM D A GGDNT V +
Sbjct: 259 VLNESSLF-----NEMIFNQDYEFKSP---IMYIDPAFSVGGDNTAVCV 299
>gi|170769336|ref|ZP_02903789.1| conserved hypothetical protein [Escherichia albertii TW07627]
gi|170121988|gb|EDS90919.1| conserved hypothetical protein [Escherichia albertii TW07627]
Length = 595
Score = 45.1 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 35/238 (14%), Positives = 65/238 (27%), Gaps = 46/238 (19%)
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY---EIFNKPLDDWK 249
+ DE P +N G T ++ + T + + G + + + K K
Sbjct: 257 LYIDEYLWIPGFRRLNEVASGMATHKHWRITYFSTPSSKTHQGYPFWSGDEWRKGDPKRK 316
Query: 250 RFQIDT--------RTVE----------------GIDPSFHEGIIARYGLDSDVTRVEVC 285
+ + R G + + + RY +
Sbjct: 317 GVEFPSFDELRDGGRECPDGQWRYVVTLEDAIAGGFNLADINELRERYNET--AFNMLFM 374
Query: 286 GQFPQQDIDSF---------IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
F F + ++ E+ EP P + G D A G + T VVL
Sbjct: 375 CVFVDDKESVFKFDDLVRCGVDVSTWEDFHPEEPMPFGNREVWGGFDPARSGDNATFVVL 434
Query: 337 R------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ W + +I + +Y I ID G + ++
Sbjct: 435 APPLVSAERFRVLEKHHWRSMSFQFMAERIRSIKARYNMTFIGIDVTGLGYGVFELVQ 492
>gi|117621599|ref|YP_853855.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo]
gi|110890985|gb|ABH02150.1| hypothetical protein BAPKO_2028 [Borrelia afzelii PKo]
Length = 450
Score = 45.1 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 55/289 (19%), Positives = 93/289 (32%), Gaps = 45/289 (15%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM----STRP-GIS 109
Q E + +++H + V +F G I++ GKT L ++L++ + S +
Sbjct: 49 QKEVLFDIESHTYSKV------IFSGGIAS----GKTFLASYLLIKKLIENKSFYEQDTN 98
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ NS L T ++ K L + + + L I
Sbjct: 99 NFIIGNSIGLLMTNTIKQIEKICGL------LGIDYQKKKSGQSFCKIAGLELNI----- 147
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
Y + D F I +EA+ L ++ L R I +N
Sbjct: 148 ------YGGKNRDAFSKIRGGNSAIIYVNEATVIHKETLLEVMKRL--RKGKSIIIFDTN 199
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQF 288
P + F + + D +K + T F E Y + V G++
Sbjct: 200 PESPAHYFKTDYIENTDVFKTYNFTTYDNPLNSADFIETQEKLY-KHFPAYKARVLYGEW 258
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
+ F E N++ IM D A GGDNT V +
Sbjct: 259 VLNESSLF-----NEMIFNQDYEFKSP---IMYIDPAFSVGGDNTAVCV 299
>gi|224022826|ref|YP_002606317.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|223929278|gb|ACN23995.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
Length = 450
Score = 45.1 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI + + P I D A GGDNT + +
Sbjct: 265 IFTQINITNDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|224020463|ref|YP_002601168.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
gi|223929158|gb|ACN23879.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
64b]
Length = 450
Score = 45.1 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI + + P I D A GGDNT + +
Sbjct: 265 IFTQINITNDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|219869985|ref|YP_002474251.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692877|gb|ACL34089.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
Length = 450
Score = 45.1 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI + + P I D A GGDNT + +
Sbjct: 265 IFTQINITNDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|195942413|ref|ZP_03087795.1| hypothetical protein Bbur8_06149 [Borrelia burgdorferi 80a]
gi|312201120|gb|ADQ44434.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
gi|312201339|gb|ADQ44646.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 450
Score = 45.1 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI + + P I D A GGDNT + +
Sbjct: 265 IFTQINITNDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|11497152|ref|NP_051291.1| hypothetical protein BB_R45 [Borrelia burgdorferi B31]
gi|6382173|gb|AAF07489.1|AE001577_3 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 45.1 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI + + P I D A GGDNT + +
Sbjct: 265 IFTQINITNDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|11497247|ref|NP_051377.1| hypothetical protein BB_O44 [Borrelia burgdorferi B31]
gi|6382268|gb|AAF07582.1|AE001579_11 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 45.1 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI + + P I D A GGDNT + +
Sbjct: 265 IFTQINITNDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|331035425|gb|AEC52982.1| large terminase protein [Synechococcus phage S-CRM01]
Length = 567
Score = 45.1 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 47/329 (14%), Positives = 95/329 (28%), Gaps = 56/329 (17%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GK+T ++ R I++ LAN + +K N + Q +
Sbjct: 84 GKSTTVTAYLIHQAIFRDNINIAILANKRETAYELM----AKLQLSYENLPKWMQQGV-- 137
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP---- 204
W + G ST G ++ DE + P
Sbjct: 138 --LGWNKGSIELENGSRITASSTSSSAVR--------GF---AYNIVMLDEFAFVPTNVA 184
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF---NKPLDDWKRFQIDTRTVEGI 261
D + ++ + I+ S P ++ FY+++ K + + + V G
Sbjct: 185 DDFFSSVYPTISS-GKSTKVIIVSTPCGMN-HFYKMWTDATKGRNSYNPIEAHWSEVPGR 242
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA----- 316
D F + IA L + E F + + I ++ + EP
Sbjct: 243 DEKFKQETIANTSLSQ--WQQEFETDFI-GSVGTLINPAKLKSLVYDEPLLSSGGLDVYE 299
Query: 317 ---------------PLIMGCDIAEEG--GDNTVVVLRRGPVIEHLFDWSKTD---LRTT 356
++ D++ + +V L + +
Sbjct: 300 HPIMKDENDENSRDHEYMITVDVSRGMKLDYSAFLVFDITQYPHRLVAKYRNNEIKPMLF 359
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCD 385
+ I + +KY I+ + N+ G +
Sbjct: 360 PDVIVPVAKKYNNAWILCEVNDIGDQVAS 388
>gi|45597419|ref|NP_996704.1| TerL [Lactococcus phage phiLC3]
gi|45504639|gb|AAS66808.1| large subunit terminase [Lactococcus phage phiLC3]
Length = 469
Score = 45.1 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 56/349 (16%), Positives = 103/349 (29%), Gaps = 51/349 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ ++ + A + + + GKT + L LW + G+S++
Sbjct: 41 PWQKNLLKEIMAIDEDGLWTHQKFGYSIPRRN----GKTEIVYILELWAL--EQGLSILH 94
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + ++ + K+L + +S+ + L + T
Sbjct: 95 TAHRISTSHSSYEK-LKKYLEDSGYVEGEDFKSIKAK----GQERLELIESGGVIQFRT- 148
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT S + F + DEA + +T+ + N IM P
Sbjct: 149 -RTSSGGLGEGFD--------ILFIDEAQEYTTEQESALKYTVTDSD-NPMTIMCGTPPT 198
Query: 233 L------SGKFYE---IFNKPLDDWKRFQI-------DTRTVEGIDPS-----FHEGIIA 271
+ + W + + D +PS I A
Sbjct: 199 PVSSGTVFTNYRDNTLAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEA 258
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D V+ G +P+ + S I AL P L +G + G D
Sbjct: 259 ELGEDKLDHNVQRLGYWPKYNQKSVISEQE-WNALKVNRLPVIKGKLFVGI---KYGNDG 314
Query: 332 TVVVLRRGPVIEH----LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + + +R N I ++K + ++ID
Sbjct: 315 ANVAMSIAVKTLSGKVFVETIDCQSIRNGNQWIINFLKKADVEKVVIDG 363
>gi|219723219|ref|YP_002474654.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692798|gb|ACL34012.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|312148753|gb|ADQ31404.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
Length = 450
Score = 45.1 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI + + P I D A GGDNT + +
Sbjct: 265 IFTQINITADYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|119953680|ref|YP_950600.1| putative large terminase subunit [Staphylococcus phage CNPH82]
gi|112361306|gb|ABI15678.1| putative large terminase subunit [Staphylococcus phage CNPH82]
gi|329736010|gb|EGG72285.1| phage terminase, large subunit, PBSX family [Staphylococcus
epidermidis VCU045]
Length = 421
Score = 44.7 bits (104), Expect = 0.032, Method: Composition-based stats.
Identities = 29/240 (12%), Positives = 76/240 (31%), Gaps = 28/240 (11%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
E++ H + + GRG GK++ + ++ + R ++ + + ++
Sbjct: 9 ELLPKHFHSLWKATKDREKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDN 67
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
L T+++ ++ + H F+++ + + + R
Sbjct: 68 TLATSVFEQIKWAIEEQKVSHLFKVKVS------------PMEITYVPRGNRIIFRGA-- 113
Query: 179 ERPDTFVGHHNTY---GMAIINDEASG-TPDVINLGILGFL---TERNANRFWIMTSNPR 231
+ P+ ++ + I + A T D + L + + + NP
Sbjct: 114 QNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPP 173
Query: 232 RLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ + YE +P + + I F + + + R E G+
Sbjct: 174 KRKQSWVNKKYETSFQPDNTFVHHS-TYLDNPFISKQFIQEAESAKERNEQRYRWEYMGE 232
>gi|56560912|ref|YP_161331.1| hypothetical protein BGP046 [Borrelia garinii PBi]
gi|52696553|gb|AAU85896.1| hypothetical protein BGP046 [Borrelia garinii PBi]
Length = 450
Score = 44.7 bits (104), Expect = 0.032, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSTLIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y + + V G++
Sbjct: 206 YFKTDYIDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KEIPTYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITQDYVFTSP--------IAYLDPAFSIGGDNTALCV 299
>gi|56560985|ref|YP_161401.1| hypothetical protein BGP116 [Borrelia garinii PBi]
gi|52696625|gb|AAU85966.1| hypothetical protein BGP116 [Borrelia garinii PBi]
Length = 336
Score = 44.7 bits (104), Expect = 0.033, Method: Composition-based stats.
Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKNKTTQSIHKEILELLSIYSLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKAKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYTHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFSSDDIEMLIPTMREQGGRIY--MSSNPVPKSHWLYKRYLANQDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ E + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219
>gi|312984196|ref|ZP_07791542.1| putative phage terminase, large subunit [Lactobacillus crispatus
CTV-05]
gi|310894415|gb|EFQ43491.1| putative phage terminase, large subunit [Lactobacillus crispatus
CTV-05]
Length = 632
Score = 44.7 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 21/166 (12%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW----LVLWLMSTRPGIS 109
WQ + +++ + + ++ GRG GKT + VL
Sbjct: 101 WQKFILAMING-WKDENDEKRFTDIHISV--GRGQGKTQIAGIQMCKAVLIDTLNYTNKD 157
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ AN+ Q T L+ + K L + F + + ++
Sbjct: 158 FLVTANTSDQ-STKLFGYIKKMLEAVIKIEPFASLAKESGLDLQTNQIIEKRTNNKVWKI 216
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILG 213
S Y +T+ + I DE D I G
Sbjct: 217 SYEADKYD-----------STHNVLAIYDETGALNTYDRITDITDG 251
>gi|224591529|ref|YP_002640858.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
gi|224554111|gb|ACN55505.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
WI91-23]
Length = 450
Score = 44.7 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + + +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALVFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI + + P I D A GGDNT + +
Sbjct: 265 IFTQINITNDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|219873383|ref|YP_002477648.1| phage terminase, large subunit, pbsx family [Borrelia garinii
Far04]
gi|219694616|gb|ACL35135.1| phage terminase, large subunit, pbsx family [Borrelia garinii
Far04]
Length = 267
Score = 44.7 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 43/248 (17%), Positives = 78/248 (31%), Gaps = 36/248 (14%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM----STRP-GIS 109
Q E + +++H + V +F G I++ GKT L ++L++ + S +
Sbjct: 49 QKEVLFDIESHDYSKV------IFSGGIAS----GKTFLASYLLIKKLIENKSFYEKDTN 98
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ NS L T ++ K + + + + L I
Sbjct: 99 NFIIGNSIGLLMTNTIKQIEKICG------FLGIDYQKKKSGESFCKIAGLELNI----- 147
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
Y + D+F I +EA+ L + L R I +N
Sbjct: 148 ------YGGKNRDSFSKIRGGNSAIIYVNEATVIHKETLLEAIKRL--RKGKAIIIFDTN 199
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQF 288
P + F F + D +K + T F E Y + V G++
Sbjct: 200 PESPTHFFKTDFIENKDVFKTYNFTTYDNPLNSADFIETQKKLY-KHLPAYKARVLYGEW 258
Query: 289 PQQDIDSF 296
+ F
Sbjct: 259 ILNESTLF 266
>gi|326387547|ref|ZP_08209153.1| hypothetical protein Y88_0459 [Novosphingobium nitrogenifigens DSM
19370]
gi|326207593|gb|EGD58404.1| hypothetical protein Y88_0459 [Novosphingobium nitrogenifigens DSM
19370]
Length = 656
Score = 44.7 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 64/251 (25%), Gaps = 61/251 (24%)
Query: 185 VGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY---- 238
G+H +I DE + + T + R S P L + Y
Sbjct: 310 QGYHGD----VIVDECFWIYGFEELFKVASAMATHKQYTRTL--FSTPSTLDHEAYGMWS 363
Query: 239 -EIFNKPLDDWKRFQIDTRT------------------------VEGIDPSFHEGIIARY 273
+ FN+ + +ID +G+D + +
Sbjct: 364 GDRFNRRRAKADKVRIDIANEHLRDGSLGPDGVWRQVVTIFDAIAKGLDLVDVDELQREN 423
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAP---------LIMGCD 323
G+D F S P ++ + + Y P + +G D
Sbjct: 424 GIDE--FDNLFRCIFLDDSQ-SMFPFALMRRCMVDAWEVWQDYQPYALRPYAGEVWLGYD 480
Query: 324 IAEEGG----DNTVVVLR-----RGPVIEHLFDWS--KTDLRTTNNKISGLVEKYRPDAI 372
D+ +V G L D + I + KYR I
Sbjct: 481 PNASEDNPTSDDAALVAIAPPSAIGGKFRILEKKRLKGLDFAGQADAIREMAGKYRVTKI 540
Query: 373 IIDANNTGART 383
ID G
Sbjct: 541 GIDTTGAGKAV 551
>gi|255652557|ref|ZP_05399459.1| hypothetical protein CdifQCD_20411 [Clostridium difficile
QCD-37x79]
Length = 591
Score = 44.7 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 47/366 (12%), Positives = 102/366 (27%), Gaps = 75/366 (20%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG K+ + A P + A +++Q + + ++ K L E++
Sbjct: 71 RGFAKSWIAAVYACCRAVLYPNSKIGIAAFTKSQAELIIREKIEKELVKQSPMLAREIKK 130
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ + + H I++ + R + +I DE
Sbjct: 131 IE-YNNKFSKVTFHNGSTIEAIVSNEQSRGFRFN--------------ILIVDEFRLVKK 175
Query: 206 VINLGILGFLTERNANRFWIMTS-------NPRR---LSGKFYEIFNKP--LDDWKRFQI 253
I IL + N + P + LS ++ + + + +
Sbjct: 176 EIQDRILKPFLNVSRNLKFKKDGKYEDYPPEPNKELYLSSAWFRMHEAYDKFKLYVKDMV 235
Query: 254 DTRTV-------------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI--- 297
D R +D + + +D+ +E+ F ++ D+
Sbjct: 236 DGRDKFVLNCNYKLSLHHGILDKERADEMKRE--MDAVSWIMEMESLFFGENEDAIFKSS 293
Query: 298 -------------PLNIIEEALNREPCPD------PYAPLIMGCDIA---EEGGDNTV-- 333
P +E + I+ DIA + DN+V
Sbjct: 294 YVNPCRTLKNPFYPPTDLEILSAKNGKVKCNLQKRKGELRIISADIAVAEGDNNDNSVYT 353
Query: 334 ---VVLRRGPVIE---HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
++ + H+ + ++ L + D ++ID G L
Sbjct: 354 CWRLLPEKDYYERMVVHIESHNGMKPDKQAIRLKQLFFDFEADFLVIDTQGVGQSVLSDL 413
Query: 388 EMLGYH 393
+ Y
Sbjct: 414 LRVNYD 419
>gi|225621943|ref|YP_002724616.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547242|gb|ACN93227.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 44.7 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y + + V G++
Sbjct: 206 YFKTDYIDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KEIPTYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITQDYVFTSP--------IAYLDPAFSIGGDNTALCV 299
>gi|23455748|ref|NP_695057.1| putative terminase [Lactococcus phage r1t]
gi|1353546|gb|AAB18704.1| ORF29 [Lactococcus phage r1t]
Length = 469
Score = 44.7 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 57/349 (16%), Positives = 104/349 (29%), Gaps = 51/349 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ ++ V A + + + GKT + L LW + G+S++
Sbjct: 41 PWQKNLLKEVMAIDEDGLWTHQKFGYSIPRRN----GKTEIVYILELWSLV--QGLSILH 94
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + ++ + K+L + +S+ + L + T
Sbjct: 95 TAHRISTSHSSYEK-LKKYLEDSGYVEGEDFKSIKAK----GQERLELIESGGVIQFRT- 148
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT S + F ++ DEA + +T+ + N IM P
Sbjct: 149 -RTSSGGLGEGFD--------ILVIDEAQEYTTEQESALKYTVTDSD-NPMTIMCGTPPT 198
Query: 233 L------SGKFYE---IFNKPLDDWKRFQI-------DTRTVEGIDPS-----FHEGIIA 271
+ + W + + D +PS I A
Sbjct: 199 PVSSGTVFTNYRDNTIAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEA 258
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D V+ G +P+ + S I AL P L +G + G D
Sbjct: 259 ELGEDKLDHNVQRLGYWPKYNQKSVISEQE-WNALKVNRLPVIKGKLFVGI---KYGNDG 314
Query: 332 TVVVLRRGPVIEH----LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + + +R N I ++K + ++ID
Sbjct: 315 ANVAMSIAVKTLSGKVFVETIDCQSIRNGNQWIINFLKKADVEKVVIDG 363
>gi|269978258|ref|ZP_06185208.1| putative phage terminase, large subunit [Mobiluncus mulieris 28-1]
gi|269933767|gb|EEZ90351.1| putative phage terminase, large subunit [Mobiluncus mulieris 28-1]
Length = 477
Score = 44.7 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 39/237 (16%), Positives = 78/237 (32%), Gaps = 26/237 (10%)
Query: 200 ASGTPDVINLGILG----FLTERNANRFWIM---TSNPRRLSGKFYEIFNKPLDDWKRFQ 252
++G D + G +T NA + T + ++ ++ W+
Sbjct: 183 STGLADS--EVLEGLRTRAVTGENAGSLCYLEWSTKSWDEMTVSERSHWDDDRAKWRA-- 238
Query: 253 IDTRTVEGIDPSFHEGIIARY------GLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEA 305
D +P+F I A Y SD+ E G + + DS IP+++ +
Sbjct: 239 -DPEVWREANPAFEIRISADYMQKELASEMSDIDFEREHLGIWERIGGDSLIPVDVWQSL 297
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
N + P L + + E + +R + L ++ L
Sbjct: 298 ANEKSQPGENIVLALDVPPSREQAFIAMASIRDDGKTHLELVDTADGLAWITPRLQQLQR 357
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
KYRP+AI++DA + L+ ++ G + + + +
Sbjct: 358 KYRPEAIVVDAQSAAGSLLPELKANRVRTLQISG-------RDYAKACGQFYDAVRE 407
>gi|322507236|gb|ADX02690.1| Putative phage terminase [Acinetobacter baumannii 1656-2]
Length = 378
Score = 44.7 bits (104), Expect = 0.039, Method: Composition-based stats.
Identities = 44/279 (15%), Positives = 77/279 (27%), Gaps = 35/279 (12%)
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A + Q++ + + W + + + Y T
Sbjct: 5 APTYPQIRDIFFPTI-----EEVAFDWGLKTKVY--------ETNKEVDIYYGRQYRTTI 51
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDE----ASGTPDVINLGILGFLTERNANRF-WIMTS 228
S E+P T VG + + DE A I+ + + A I +
Sbjct: 52 ICRSMEKPATIVGFKIGHAL---IDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVA 108
Query: 229 NPRRLSGKFYEIFNKP-------LDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVT 280
YE F K + Q T E + + + Y +
Sbjct: 109 TTPEGFKFTYEQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLI 166
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP 340
+ GQF + P + + + PL++G D V V+R G
Sbjct: 167 SAYLRGQFVNLTSGAVYP-DFDRVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVIREG- 224
Query: 341 VIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIIDANN 378
L + D T I+ + +I DA+
Sbjct: 225 KPRALDELVGVRDTPTMCQLINERFPDH-DITVIPDASG 262
>gi|239502405|ref|ZP_04661715.1| putative phage terminase [Acinetobacter baumannii AB900]
Length = 427
Score = 44.7 bits (104), Expect = 0.039, Method: Composition-based stats.
Identities = 54/326 (16%), Positives = 97/326 (29%), Gaps = 52/326 (15%)
Query: 75 PEVFKGAISAGRGIGKTTLN-------AWLVLWLMSTRPGISVIC--LANSETQLKTTLW 125
P F+ + AG G GKT + +W V A + Q++ +
Sbjct: 19 PNKFRAFV-AGFGSGKTWVGCSSLCDKSWS---------FPKVPLGYFAPTYPQIRDIFF 68
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+ W ++ + D+ + + Y + S E+P+T V
Sbjct: 69 PTI-----DEVAFDWGL--KTKIYESNKEVDLYYG------RQYRSTIICRSMEKPNTIV 115
Query: 186 GHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRF-WIMTSNPRRLSGKFYEIFNK 243
G + + D + I+ + + A I + +E F K
Sbjct: 116 GFKIGHALIDELDVMTKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTHEQFVK 175
Query: 244 P-------LDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+ Q T E + + + Y + + GQF +
Sbjct: 176 EANLSDAKRALYGMIQASTYDNEVNLPDDYIASLFESY--PPQLISAYLKGQFVNLTSGA 233
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLR 354
P + + + P L++G D V V+R G L + D
Sbjct: 234 VYP-DFDRTLNHTDEEIRPNEALLIGMDFNVLKMAAVVYVIRDG-KPRALDELVGVRDTP 291
Query: 355 TTNNKISGLVEKYRPD--AIIIDANN 378
T + L+EK+ II DA
Sbjct: 292 TMADL---LIEKFPNHEMTIIPDAAG 314
>gi|169633422|ref|YP_001707158.1| putative phage terminase [Acinetobacter baumannii SDF]
gi|169152214|emb|CAP01118.1| conserved hypothetical protein; Putative phage terminase
[Acinetobacter baumannii]
Length = 432
Score = 44.7 bits (104), Expect = 0.039, Method: Composition-based stats.
Identities = 54/326 (16%), Positives = 97/326 (29%), Gaps = 52/326 (15%)
Query: 75 PEVFKGAISAGRGIGKTTLN-------AWLVLWLMSTRPGISVIC--LANSETQLKTTLW 125
P F+ + AG G GKT + +W V A + Q++ +
Sbjct: 24 PNKFRAFV-AGFGSGKTWVGCSSLCDKSWS---------FPKVPLGYFAPTYPQIRDIFF 73
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+ W ++ + D+ + + Y + S E+P+T V
Sbjct: 74 PTI-----DEVAFDWGL--KTKIYESNKEVDLYYG------RQYRSTIICRSMEKPNTIV 120
Query: 186 GHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRF-WIMTSNPRRLSGKFYEIFNK 243
G + + D + I+ + + A I + +E F K
Sbjct: 121 GFKIGHALIDELDVMTKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTHEQFVK 180
Query: 244 P-------LDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+ Q T E + + + Y + + GQF +
Sbjct: 181 EANQSDAKRALYGMIQASTYDNEANLPDDYIASLFESY--PPQLISAYLKGQFVNLTSGA 238
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLR 354
P + + + P L++G D V V+R G L + D
Sbjct: 239 VYP-DFDRTLNHTDEEIRPNEALLIGMDFNVLKMAAVVYVIRDG-KPRALDELVGVRDTP 296
Query: 355 TTNNKISGLVEKYRPD--AIIIDANN 378
T + L+EK+ II DA
Sbjct: 297 TMADL---LIEKFPNHEMTIIPDAAG 319
>gi|117530337|ref|YP_851180.1| superfamily II DNA/RNA helicase [Microcystis phage Ma-LMM01]
gi|117165949|dbj|BAF36257.1| superfamily II DNA/RNA helicase [Microcystis phage Ma-LMM01]
Length = 483
Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 27/177 (15%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
++ ++G + A G GK+ + A L+++ + + +
Sbjct: 96 AIDARLRLDQQEAVAGILRGYRGYVRAATGYGKSAVIATLMMYF-----EARRLIVVPTV 150
Query: 118 TQLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
L AE V +W SL P D L+ + + Y
Sbjct: 151 RLLYQM--AEDVQEWASLSPGLVGDG-NDDISTMTIATVDTLYERIKRGDRRY------- 200
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ G + DEA + GI L+ NA MT+ P R
Sbjct: 201 ----IEWLSGIE-----VAVFDEAHTYMNA--SGITTALSLVNARYKIGMTATPTRT 246
>gi|11497404|ref|NP_051512.1| hypothetical protein BB_Q50 [Borrelia burgdorferi B31]
gi|6382425|gb|AAF07735.1|AE001584_32 conserved hypothetical protein [Borrelia burgdorferi B31]
Length = 450
Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 51/161 (31%), Gaps = 13/161 (8%)
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
++ F + I +EA+ +L L R I +NP F
Sbjct: 150 GDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEHYF 207
Query: 238 YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDIDSF 296
+ + +K + T + F E Y D + V G++ F
Sbjct: 208 KTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDSIF 266
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
+NI + + P I D A GGDNT + +
Sbjct: 267 TQINITNDYVFTSP--------IAYLDPAFSVGGDNTALCV 299
>gi|313499430|gb|ADR60796.1| P-loop protein [Pseudomonas putida BIRD-1]
Length = 374
Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats.
Identities = 45/329 (13%), Positives = 92/329 (27%), Gaps = 62/329 (18%)
Query: 78 FKGAISAGRGIGKTTLNAW--------LVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
F+ A+ GR GKT L W +S + A + Q K W +
Sbjct: 34 FRDAV-CGRRFGKTFLGKAEMRRAARLAAEWGVSVEDE--IWYGAPTFKQAKRVFWRRLK 90
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ + P W + + + + + R + D G
Sbjct: 91 QAI-----------------PEAWRAARPNETECSITLKSGHIMRVVGLDNYDNLRG--- 130
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRF-----------WIMTSNPRRLSGKFY 238
+ ++ DE + +L + + P+ Y
Sbjct: 131 SGLFFVLVDEWADCSWAAWEEVLRPMLSTCQYTIPQTGESRKGGHALRIGTPKG-FNHCY 189
Query: 239 EIFN-------KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + W+ + V ++ AR +D R E F +
Sbjct: 190 DTYRDGQPGGEPDHKSWQYTSLQGGNVPAVELD-----AARRKMDPRTFRQEYEAGF--E 242
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ + + P + +G D V V+R G L ++
Sbjct: 243 NYAGVVYSTFDRAECHTSERIKPGEAIHIGMDFNVMKMAAVVYVVRDGL-PLALDEFH-- 299
Query: 352 DLRTTNNKISGLVEKYRPDAIII--DANN 378
+R T + I + ++ ++ + DA+
Sbjct: 300 SVRDTPDMIEKIKVRFSGHSVSVYPDASG 328
>gi|319404714|emb|CBI78316.1| phage-related protein [Bartonella rochalimae ATCC BAA-1498]
Length = 442
Score = 44.3 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 9/193 (4%)
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNAN--RFWIMTSNPRRLSGKFYEIFN-KPLDD 247
+ DEA D ++ L E +T NP R + + F +
Sbjct: 122 RILLCWVDEAEPVTDAAWQILIPTLREEGKEWHSELWVTWNPCRENAAVEKRFRFTKDPN 181
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
K +I+ R + A + + G++ Q ++ ++E
Sbjct: 182 IKGVEINWRDNPKFPAKLNRDRQADLEQRPEQYQHIWEGEYLQAMQGAYYQKLLLEAEQE 241
Query: 308 REPCPDPYAPLI---MGCDIAEEG--GDNTVVVLRR-GPVIEHLFDWSKTDLRTTNNKIS 361
P PLI + DI G D T + + + + D+ + + + I
Sbjct: 242 GRITTVPRDPLIQVKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIG 301
Query: 362 GLVEKYRPDAIII 374
+ +K A+++
Sbjct: 302 WVCQKGYEKALMV 314
>gi|306818632|ref|ZP_07452355.1| possible phage-related terminase [Mobiluncus mulieris ATCC 35239]
gi|304648805|gb|EFM46107.1| possible phage-related terminase [Mobiluncus mulieris ATCC 35239]
Length = 470
Score = 44.3 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 39/237 (16%), Positives = 78/237 (32%), Gaps = 26/237 (10%)
Query: 200 ASGTPDVINLGILG----FLTERNANRFWIM---TSNPRRLSGKFYEIFNKPLDDWKRFQ 252
++G D + G +T NA + T + ++ ++ W+
Sbjct: 176 STGLADS--EVLEGLRTRAVTGENAGSLCYLEWSTKSWDEMTVSERSHWDDDRAKWRA-- 231
Query: 253 IDTRTVEGIDPSFHEGIIARY------GLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEA 305
D +P+F I A Y SD+ E G + + DS IP+++ +
Sbjct: 232 -DPEVWREANPAFEIRISADYMQKELASEMSDIDFEREHLGIWERIGGDSLIPVDVWQSL 290
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
N + P L + + E + +R + L ++ L
Sbjct: 291 ANEKSQPGENIVLALDVPPSREQAFIAMASIRDDGKTHLELVDTADGLAWITPRLQQLQR 350
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
KYRP+AI++DA + L+ ++ G + + + +
Sbjct: 351 KYRPEAIVVDAQSAAGSLLPELKANRVRTLQISG-------RDYAKACGQFYDAVRE 400
>gi|332290535|ref|YP_004421387.1| conserved hypothetical protein, Terminase-like family
[Gallibacterium anatis UMN179]
gi|330433431|gb|AEC18490.1| conserved hypothetical protein, Terminase-like family
[Gallibacterium anatis UMN179]
Length = 597
Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 17/135 (12%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN----REPCPDPYAP---- 317
E + +Y + ++ F +++ A + ++ PD P
Sbjct: 361 LEALKRKY--NKAAFDQLFMCKWIDDADSIFNISQLLKCATDISKWQDFRPDSDRPLDNR 418
Query: 318 -LIMGCDIA--EEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
+ G D A +G V+ I W +I + ++Y
Sbjct: 419 EVWCGYDPAKSYDGASFVVIAPPVLPGEKYRILERHQWHGLSYSYQAEQIKQIYQRYNVS 478
Query: 371 AIIIDANNTGARTCD 385
I ID + G +
Sbjct: 479 YIGIDTSGVGVGVYE 493
>gi|307544941|ref|YP_003897420.1| cobalamin synthesis protein, P47K [Halomonas elongata DSM 2581]
gi|307216965|emb|CBV42235.1| cobalamin synthesis protein, P47K [Halomonas elongata DSM 2581]
Length = 399
Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 7/136 (5%)
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWSKTDLRTTN 357
++I+ L +P + +A +I + G D T+ +IE L
Sbjct: 81 SLIQHLLAHKPAGERWAVVIN--EFGRVGIDQTMFEAHDDLIIESLPGGCLCCQQAVVLR 138
Query: 358 NKISGLVEKYRPDAIIIDANNTG--ARTCDYLEMLGY-HVYRVLGQKRAVDLEFCRNRRT 414
+ L+ ++RPD +II+ + G A D L G+ + G +D + R
Sbjct: 139 ASLVRLLRRHRPDRLIIEPSGLGHPAGLLDLLRGEGFADALDIRGVVAVLDPRRLDDTRA 198
Query: 415 ELHVKMADWLEFASLI 430
H D L A +
Sbjct: 199 MAHETFLDQLRMADAV 214
>gi|226949140|ref|YP_002804231.1| putative phage terminase, large subunit [Clostridium botulinum A2
str. Kyoto]
gi|226841904|gb|ACO84570.1| putative phage terminase, large subunit [Clostridium botulinum A2
str. Kyoto]
Length = 572
Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats.
Identities = 54/306 (17%), Positives = 97/306 (31%), Gaps = 34/306 (11%)
Query: 57 EFMEVVDAHCLNSVNNPNP-EVFKGA-ISAGRGIGKTTLNAWLVLWL--MSTRPGISVIC 112
+F E + + V F+ + I GR GK+ LN L +L S + C
Sbjct: 77 QFQEFILGSLIGWVTKDKEYRRFRSSYIQLGRQNGKSFLNGILGTYLGNFSGYKYGKIFC 136
Query: 113 LANSETQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+A Q K +W E++K+ S F +Q ++ + +LG D+K
Sbjct: 137 VATKHDQAK-IVWDEMNKFIQSDDDLGELFTVQEYKSTIICNLTNTVIKALGRDTKGLD- 194
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN---------- 221
R + H M + + G I ++ +T
Sbjct: 195 GLRPLLTVIDEYHA--HKDNQMYKLME---GGQKKIKQSLISVITTAGFELESPCHKMYK 249
Query: 222 -RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI--DPSFHEGIIARY----- 273
I+ + S Y DD +Q + + D E +I Y
Sbjct: 250 YCKQILEGTEKNESKFIYIAEMDEEDDLNNYQNWIKANPMLQYDREALENLIPVYKSAKA 309
Query: 274 --GLDSDVTRVEVCGQFPQQDIDSFI-PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
D + + + + ++ + A N+ I+G D++ GGD
Sbjct: 310 IGSKDWNDFLTKQLNMWVEFTETKYMNMTAWNKCASNKTLEDFRGQEFILGIDLS-SGGD 368
Query: 331 NTVVVL 336
T +
Sbjct: 369 LTSICF 374
>gi|163850863|ref|YP_001638906.1| hypothetical protein Mext_1434 [Methylobacterium extorquens PA1]
gi|163662468|gb|ABY29835.1| protein of unknown function DUF264 [Methylobacterium extorquens
PA1]
Length = 458
Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats.
Identities = 62/296 (20%), Positives = 98/296 (33%), Gaps = 43/296 (14%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
L +E H P P + A+ GRG GKT A W+ G V
Sbjct: 46 LRLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGA---EWVRGLAHGDPVFTPE 102
Query: 115 NSET-QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
E L +A+V + P+ + L P W G +
Sbjct: 103 PVERIALVGETFADVRDVMIEGPSG-LLALPRLGGAPPVWQPSRRRVVFGN-----GAVA 156
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRR 232
+S E PD+ G A+ +DE + + +F + PR
Sbjct: 157 LAFSAEEPDSLRG---PQFGAVWSDEVAK-----WREAEAT---YDMIQFGLRLGTHPRG 205
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTV----------EGIDPSFHEGIIARYGLDSDVTRV 282
L +P+ +R D RTV + + PSF E ++ RY + + R
Sbjct: 206 LVT----TTPRPVPLIRRLLADPRTVVTRSRTADNAQNLAPSFLEEVVGRY-AGTRLRRQ 260
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVV 335
E+ G+ + D+ + IE A R P + + D + G D +V
Sbjct: 261 ELDGELIEDRPDALWTRDAIERA--RVSEAPPLQRIAVAIDPPASSRVGADACGIV 314
>gi|225626397|ref|YP_002727892.1| terminase large subunit [Enterococcus phage EFAP-1]
gi|225346568|gb|ACN86334.1| terminase large subunit [Enterococcus phage EFAP-1]
Length = 574
Score = 44.3 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 49/303 (16%), Positives = 97/303 (32%), Gaps = 52/303 (17%)
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW-LMST-RPGIS--VICLANSETQLKTT 123
N K IS R GK+ L A + L+ + P S ++ AN++ Q
Sbjct: 89 RKKKNKMRRFRKVYISLARKNGKSILVAGISLYEFLLGQYPNASRQIVAAANTKDQ---- 144
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
++ N ++++L I+ + + S + D+
Sbjct: 145 --------AGIVFNMLKSQLKALRAVSDGTRKVTKVNKKDIEHLEDESTVKPLSSD-VDS 195
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY----- 238
G G+ EA T + + +++ I+++ + L+G +
Sbjct: 196 LDGLDVLCGVLDEYGEAKSTA--MIEVLESSQSQQLQGLILIISTTTKNLNGPMHSIEYP 253
Query: 239 ---EIFNKPLDD-------WKRFQIDTRTVE---------GIDPSFHEGI-------IAR 272
++ N+ ++ W+ + E + HE + +A
Sbjct: 254 FITKLLNEEVEADAYLALCWEMDSLSEVDDEANWIKSNPLFENAQLHETMYEHKVNSLAE 313
Query: 273 YGLDSDV--TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
Y D+ + + Q DSFI E +P P+ +G D+A G
Sbjct: 314 YKAKGDMSGWLTKEMNFWVQSSQDSFIDKESWEAVKQTKPYDIKGRPVYIGLDLARTGDM 373
Query: 331 NTV 333
V
Sbjct: 374 TAV 376
>gi|328543446|ref|YP_004303555.1| endopeptidase Clp ATP-binding chain A [polymorphum gilvum
SL003B-26A1]
gi|326413190|gb|ADZ70253.1| Endopeptidase Clp ATP-binding chain A [Polymorphum gilvum
SL003B-26A1]
Length = 813
Score = 44.3 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 73/215 (33%), Gaps = 19/215 (8%)
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR-VEVCGQFPQQDIDSFIPLNIIE 303
K ++ V + + I G DS++ R +++ + + + PL + +
Sbjct: 171 KPKKKTDALEAYCVNLNEKATKGKIDPLIGRDSEIARTIQILCRRSKNN-----PLFVGD 225
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL 363
+ + + A I+ D+ E D T+ L G ++ + D ++
Sbjct: 226 PGVGKTAIAEGLARRIVKGDVPEVLKDATIFALDMGALL--AGTRYRGDFEERLKQVVKE 283
Query: 364 VEKYRPDAIIID----ANNTGARTCDYLEMLG-YHVYRVLGQKRAVDLEFCRNRRTELHV 418
+E+Y + ID GA + ++ G R + + R +
Sbjct: 284 IEEYPGAVMFIDEIHTVIGAGATSGGAMDASNLLKPALASGAIRCIGSTTYKEYR-QFFE 342
Query: 419 KMADWLEFASLINHSG-----LIQNLKSLKSFIVP 448
K + I+ + I+ LK LK +
Sbjct: 343 KDRALVRRFQKIDVNEPSVPDAIEILKGLKPYFED 377
>gi|293393565|ref|ZP_06637875.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
gi|291423900|gb|EFE97119.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
Length = 572
Score = 44.3 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 58/338 (17%), Positives = 99/338 (29%), Gaps = 62/338 (18%)
Query: 195 IINDEASGTPDVIN--LGILGFLTERNANRFWIMTSNPRRLSGKFY-----EIFNKPLDD 247
+ DEA + +N G T R S P + Y ++FNK
Sbjct: 230 LYLDEAFWISNFLNLRKVAAGMATHEGLRRT--YFSTPSSEEHEAYQFWTGDLFNKSRRK 287
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIAR---------------------YGLDSDV-TRVEVC 285
+R +ID + I R G +S
Sbjct: 288 AERVEIDISHKALKNGRLGGDGIWRQIVTIEDAIKLGFNRVKIETIKGENSPEDYDNLYR 347
Query: 286 GQFPQQDIDSF-----IPLNIIEEALNREPCPDPYAP-------LIMGCDI--AEEGGDN 331
+F +F I + + P +P+AP + +G D GD+
Sbjct: 348 CRFVTVGERAFNYNAMIGCCVDGFNDDVWPDWNPFAPRPIGDRGVWIGYDPNGGSGNGDS 407
Query: 332 TVVVLRR-----GPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+V+ G + + I GL E+Y I ID
Sbjct: 408 AGLVVIVPPAVAGGKFRIIERVQLRGMEFEEQAKVIEGLTERYNVQHIAIDGTG---GFG 464
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
D + L V AV ++ + + +K + L +G++ ++S +
Sbjct: 465 DAVWQL-----VVKFFPLAVKYQYSVQLKRAMVLKALMLVRAGRLELDAGMMDLIQSFMT 519
Query: 445 FIVPNTGE-LAIESKRVKGAKSTDYSDGLMYTFAENPP 481
G + S R +G+ D + T N P
Sbjct: 520 VRKVQKGNVMTYVSDRKRGSNHGDLAWA-SMTALYNEP 556
>gi|56560881|ref|YP_161301.1| hypothetical protein BGP016 [Borrelia garinii PBi]
gi|52696522|gb|AAU85866.1| hypothetical protein BGP016 [Borrelia garinii PBi]
Length = 396
Score = 44.3 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKNKTTQSIHKEILELLSIYGLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKAKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYAHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFSSDDIEMLIPTMREQGGRIY--MSSNPVPKSHWLYKRYLANQDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ E + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219
>gi|213580952|ref|ZP_03362778.1| hypothetical protein SentesTyph_07004 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 67
Score = 44.3 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
I W D R + I L E+Y I ID+ G + ++
Sbjct: 16 RILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVK 63
>gi|213162920|ref|ZP_03348630.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
Length = 113
Score = 44.3 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
I W D R + I L E+Y I ID+ G + ++
Sbjct: 16 RILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVK 63
>gi|323139470|ref|ZP_08074518.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC
49242]
gi|322395272|gb|EFX97825.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC
49242]
Length = 439
Score = 44.3 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 65/412 (15%), Positives = 125/412 (30%), Gaps = 62/412 (15%)
Query: 82 ISAGRGIGKTTLNA----WLVLW--LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A L L TRP + + + ++ + VS L++
Sbjct: 54 ILGGRGAGKTRAGAEWVKGLALGRPHFCTRPVSRIALIGETAADVREVMIEGVSGLLAIH 113
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG--HHNTYGM 193
+ +S + + +S E P++ G H
Sbjct: 114 GKRDRPRWESSR---------------RRLVWDSGVVAQAFSAEDPESLRGPQFHAA--- 155
Query: 194 AIINDEASG--TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
DE + + L + R + T+ P R + ++ P R
Sbjct: 156 --WCDELAKWRYARETWDMLQFGLRLGDWPRQLV-TTTP-RPTPLLKDLIAHPATVLTR- 210
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ + PSF E ++A+Y + + R E+ G+ ++ D+ ++IE +R
Sbjct: 211 ALTRENAANLAPSFLESVVAQY-AGTRLGRQELDGEIVEERKDALWTRDLIEA--SRVAD 267
Query: 312 PDPYAPLIMGCD-IAEEGG--DNTVVVLRRGPVIEHLFDWSKTDLRTT-----NNKISGL 363
A +++ D A G DN ++ +F + + + L
Sbjct: 268 APRLARIVVAVDPPASFGKRADNCGIIAAGADAGGAIFVLADSTISAARPAQWARAAIAL 327
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
K D ++ + N G L V + +L+ +
Sbjct: 328 YHKLSADVLVAEVNQGGEMVRAVLNEAD-PAAPVTMVRATRGKYLRAAPVAQLYEQGR-- 384
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
++ L + G +S D D L++
Sbjct: 385 VKHVGAFP--ALEDEMC-----DFGFDGLSC--------GRSPDRLDALVWA 421
>gi|323978427|gb|EGB73511.1| terminase [Escherichia coli TW10509]
Length = 595
Score = 43.9 bits (102), Expect = 0.054, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 44/162 (27%), Gaps = 20/162 (12%)
Query: 244 PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P W+ ++ G + + + RY + F S + +
Sbjct: 334 PDGQWRYVVTLEDAIAGGFNLADINELRERYNET--AFNMLFMCVFVDDKE-SVFKFDDL 390
Query: 303 EEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVLR------RGPVIEHLF 346
+ + P + G D A G + T VVL +
Sbjct: 391 VRCGVDVSTWEDFHPEDAMPFGNREVWGGFDPARSGDNATFVVLSPPLVAAERFRVLEKH 450
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
W + +I + +Y I ID G + ++
Sbjct: 451 HWRSMSFQFMAERIRSIKARYNMTFIGIDVTGLGYGVFELVQ 492
>gi|291085166|ref|ZP_06570961.1| terminase, ATPase subunit [Citrobacter youngae ATCC 29220]
gi|291072161|gb|EFE10270.1| terminase, ATPase subunit [Citrobacter youngae ATCC 29220]
Length = 106
Score = 43.9 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLV 364
P + P +G D + G VL G L W D T I L
Sbjct: 17 RPFNWRPAWIGYDPSHTGDSAGCAVLAPPLVAGGKFRILERHQWRGMDFATQAEAIRELT 76
Query: 365 EKYRPDAIIIDANNTGARTCDYLE 388
EKY + I IDA + G +
Sbjct: 77 EKYCVEYIGIDATDIGQGVYQLVR 100
>gi|259418958|ref|ZP_05742875.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
gi|259345180|gb|EEW57034.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
Length = 478
Score = 43.9 bits (102), Expect = 0.056, Method: Composition-based stats.
Identities = 59/423 (13%), Positives = 110/423 (26%), Gaps = 79/423 (18%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ S G + + + Q++ +
Sbjct: 86 ILGGRGAGKTRAGA---EWVRSEVEGAEPFGIGRARRMALVGETYDQVRDVM-------- 134
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ S W + + +S P+ G
Sbjct: 135 --IHGDSGILACSPPDRRPEWRAGERRLVWPN-----GATAQAFSASDPEALRGPQFD-- 185
Query: 193 MAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + L A R + + R ++ P
Sbjct: 186 -AAWVDELAKWRRAQDAWDMLQFALRLGAAPR--VCVTTTPRNVPLLKQLLESPSTV-TT 241
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ P F + ARYG S + R E+ G + ++E+ R+
Sbjct: 242 HAPTEANRANLAPGFLTEVRARYG-GSRLARQELDGVMLADVDGALWTSGMLEQLQRRDR 300
Query: 311 CPDPYAPLIMGCDI---AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG----- 362
P +++ D A +G D +++ + +W +
Sbjct: 301 PP--LDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISEWRAY---VLADHTVQGLGPT 355
Query: 363 --------LVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNR 412
+ YR + ++ + N GA L + V K
Sbjct: 356 GWARAAIAARDAYRAERLVAEVNQGGALVGTVLRQVDPLVPFTPVHASKGKA-------A 408
Query: 413 RTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
R E + + L + + + + G S D D L
Sbjct: 409 RAEPVAALYEQGRVHHAPGLQELEEQMCLMTAQGYRGDG-------------SPDRVDAL 455
Query: 473 MYT 475
++
Sbjct: 456 VWA 458
>gi|254474412|ref|ZP_05087798.1| phage DNA Packaging Protein [Ruegeria sp. R11]
gi|214028655|gb|EEB69490.1| phage DNA Packaging Protein [Ruegeria sp. R11]
Length = 417
Score = 43.9 bits (102), Expect = 0.057, Method: Composition-based stats.
Identities = 64/415 (15%), Positives = 113/415 (27%), Gaps = 63/415 (15%)
Query: 82 ISAGRGIGKTTLNA-WLVLWLMSTRPGI-----SVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A W+ + P + L + Q++ + S L+
Sbjct: 25 ILGGRGAGKTRAGAEWVRALAEGSTPLSAGRARRIALLGETYDQVRDVMVQGDSGILACT 84
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P P + + +S P+ G A
Sbjct: 85 P---------------PDRRPQWKATERRLIWPNGATAQAFSAHDPEALRGPQFD---AA 126
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + L + +T+ P R ++ P +
Sbjct: 127 WADELAKWKRGQDSWDMLQFAL-RLGTDPRVCVTTTP-RNVSVLRDLLASPSTV-QTHAA 183
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ SF E + RY S + R E+ G Q + + A R P
Sbjct: 184 TEANRANLATSFIEEVRNRY-AGSRLGRQELDGVLLQDVEGALWCNAGLVGAQVRSAPP- 241
Query: 314 PYAPLIMGCDIA---EEGGDNTVVVLR--------RGPVIEHLFDWSKTDLRTT--NNKI 360
+++ D A + D +++ + L D + R +
Sbjct: 242 -LDRVVVAVDPAVSAGKSSDACGILVVGAVLQGPPQDWRAYVLADCTVQGARPLVWAQAV 300
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
++ D ++ + N GA L + V R + R E +
Sbjct: 301 VDAAHRFDADRVVAEVNQGGALVESLLRQIDPLV-----PFRPRHAARSKGARAEPVAAL 355
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ L L + + G L G S D D L++
Sbjct: 356 YEQGRVRHLPGLGALEDQMC-----QMTPRGYL--------GQGSPDRLDALVWA 397
>gi|219723512|ref|YP_002476767.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
gi|219694406|gb|ACL34930.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
Length = 396
Score = 43.9 bits (102), Expect = 0.059, Method: Composition-based stats.
Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIHKEILELLSRYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKAKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYAHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFSSDDIEMLIPTMREQGGRIY--MSSNPVPKSHWLYKRYLANQDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ E + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219
>gi|212712878|ref|ZP_03321006.1| hypothetical protein PROVALCAL_03975 [Providencia alcalifaciens DSM
30120]
gi|212684570|gb|EEB44098.1| hypothetical protein PROVALCAL_03975 [Providencia alcalifaciens DSM
30120]
Length = 436
Score = 43.9 bits (102), Expect = 0.059, Method: Composition-based stats.
Identities = 67/424 (15%), Positives = 127/424 (29%), Gaps = 58/424 (13%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P FK + AG G GKT + + M P I+ A + Q++ + +
Sbjct: 18 PHKFKAYV-AGFGSGKTWVGCGGICKGMWEFPKINQGYFAPTYPQIRDIFYPTI----EE 72
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ ++ + + + + + Y S E+P+T VG +
Sbjct: 73 VALDWGLKVNIVESNKEVHF---------YEGRRYRGTVICRSMEKPETIVGFKIGNAL- 122
Query: 195 IINDE----ASGTPDVINLGILGFL--TERNANRFWIMTSNPRRLSGKFYEIFNKPLDD- 247
DE S I+ + +T+ P Y+ F K + D
Sbjct: 123 --IDELDVMKSDKAQKAWRKIIARMRYNVAGLRNGIDVTTTPEG-FKFVYQQFVKAVRDK 179
Query: 248 ------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
+ Q T E + + +++ Y ++ + + GQF + I
Sbjct: 180 PELSTLYGIVQASTFDNEKNLPADYIPSLMSSY--PPELIKAYLKGQFTNLTSGT-IYHT 236
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP---VIEHLFDWSKTDLRTTN 357
+ N E P L +G D V VLR G V E + + D+
Sbjct: 237 FDRKLNNSEEEEQPGETLYIGMDFNVGKMAGIVHVLRLGLPHAVTEIINAYDTPDMVRII 296
Query: 358 NKISGLVE-----KYRPDAIIIDANN-----TGARTCD--YLEMLGYHVYRVLGQKRAVD 405
+ L + K R I DA+ A + D L G+HV ++
Sbjct: 297 KERFWLYDGSDYKKVREIYIYPDASGDSRKSNNASSTDIAQLRQAGFHV--IVNDSNPPV 354
Query: 406 LEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
+ + + + + + + + + E + G
Sbjct: 355 KDRINSMNA-MFCNAKGERRYKVNVKRCPVYTESLEQQVWDPTSG-----EPDKKSGNDH 408
Query: 466 TDYS 469
+
Sbjct: 409 PNDG 412
>gi|320160638|ref|YP_004173862.1| hypothetical protein ANT_12280 [Anaerolinea thermophila UNI-1]
gi|319994491|dbj|BAJ63262.1| hypothetical protein ANT_12280 [Anaerolinea thermophila UNI-1]
Length = 1068
Score = 43.9 bits (102), Expect = 0.062, Method: Composition-based stats.
Identities = 32/204 (15%), Positives = 65/204 (31%), Gaps = 17/204 (8%)
Query: 43 TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM 102
T L+ F P S + C+ N P F + G GKT + L
Sbjct: 539 TYLKQFENPTSDINRKRNEILHACIEKGENEKPGFFSLTVPT--GGGKTLASIAFALHHA 596
Query: 103 STRPGISVICLAN--SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC 160
+T +I + + + ++ E+ ++L + F+ A ++ +
Sbjct: 597 ATHGLKRIIYVIPFTTIIEQNAQVFKEIFGEENVLEHHSNFDWNDGKREDADNRTNSILA 656
Query: 161 SLGIDSKHYSTMCRTYS---------EERPDTFVGHHNTYGMAIINDEASGTPD----VI 207
L + ++++ + + + HN II DEA P
Sbjct: 657 KLKLAAENWDIPIVVTTNVQFFESLFDNKSSRCRKLHNIAKSVIIFDEAQMLPKEYIRPA 716
Query: 208 NLGILGFLTERNANRFWIMTSNPR 231
+ +T A+ + + P
Sbjct: 717 MAAVWELVTNYGASAVFCTATQPG 740
>gi|119967835|ref|YP_950664.1| putative large terminase subunit [Staphylococcus phage PH15]
gi|112790059|gb|ABI21779.1| putative large terminase subunit [Staphylococcus phage PH15]
Length = 446
Score = 43.9 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 41/365 (11%), Positives = 109/365 (29%), Gaps = 41/365 (11%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
++ E++ H + + GRG GK++ + ++ + R ++ + +
Sbjct: 4 IKLSELLPKHFHSLWKATKDREKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVR 62
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
++ L T+++ ++ + H F+++ + + + R
Sbjct: 63 KADNTLATSVFEQIKWAIEEQKVSHLFKVKVS------------PMEITYVPRGNRIIFR 110
Query: 175 TYSEERPDTFVGHHNTY---GMAIINDEASG-TPDVINLGILGFL---TERNANRFWIMT 227
+ P+ ++ + I + A T D + L + + +
Sbjct: 111 GA--QNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFS 168
Query: 228 SNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
NP + + YE +P + + I F + + + R E
Sbjct: 169 YNPPKRKQSWVNKKYETSFQPDNTFVHHS-TYLDNPFISKQFIQEAESAKERNEQRYRWE 227
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN--TVVVLRRGPV 341
G+ +P N ++ + + + D + V + G
Sbjct: 228 YMGEAIGS---GVVPFNNLQIEKIPDELYKSFDNIRNAVDFGLTKTAPLHSDVYSKLGEH 284
Query: 342 IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY-----LEMLGYHVYR 396
I + + + +K + +D + G + + L+ GY
Sbjct: 285 ISGVRKKACATDPL--AFVRWHYDKKKRIIYAVDEH-YGVQISNREFANWLKRRGYQSDE 341
Query: 397 VLGQK 401
+
Sbjct: 342 IYADS 346
>gi|219048282|ref|YP_002455497.1| PbsX family phage terminase large subunit [Borrelia afzelii ACA-1]
gi|216752464|gb|ACJ73223.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
Length = 396
Score = 43.9 bits (102), Expect = 0.064, Method: Composition-based stats.
Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKNKTTQSIHKEILELLSIYGLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKAKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYAHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFSSDDIEMLIPTMREQGGRIY--MSSNPVPKSHWLYKRYLANEDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ E + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219
>gi|289824955|ref|ZP_06544345.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
Length = 98
Score = 43.9 bits (102), Expect = 0.066, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 18/48 (37%)
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
I W D R + I L E+Y I ID+ G + ++
Sbjct: 2 RILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVK 49
>gi|307294267|ref|ZP_07574111.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
L-1]
gi|306880418|gb|EFN11635.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
L-1]
Length = 438
Score = 43.9 bits (102), Expect = 0.067, Method: Composition-based stats.
Identities = 65/403 (16%), Positives = 115/403 (28%), Gaps = 55/403 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AGRG GKT A V + P + + + + + + E
Sbjct: 59 AGRGFGKTRAGAEWVRSVAEGDPAARIALVGATLGEARAVM----------------VEG 102
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHY-STMCRTYSEERPDTFVGHHNTYGMAIINDE--- 199
S L +PW++ + + ++ G ++G DE
Sbjct: 103 ASGVLAVSPWWNRPAFLPALRKLVWRNGAVATLFGAAEAESLRGPQFSHG---WADEIAK 159
Query: 200 -ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
A G + ++G T P L E D
Sbjct: 160 WAGGQA-AWDNLMMGMRLGIAPRVLATTTPRPVALVRGLVE--RNGSDVVVTRGRSADNA 216
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ F + YG + R E+ G+ ++ + +++E A +
Sbjct: 217 SHLADGFLAAMERNYGGT-RLGRQELDGELIEEVEGALWSRDLLERCRVAHVRGT-LARV 274
Query: 319 IMGCDI-AEEGGDNT---VVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYRPDAI 372
++ D A GD VV L + D + ++ + D +
Sbjct: 275 VVAVDPPASVHGDACGIVVVGLGGDGRAYVIADATVEGATPEGWARAVAAAALVHGADRV 334
Query: 373 IIDANNTGARTCDYLE--MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
+ +ANN GA L G V V + V R E + + A
Sbjct: 335 VAEANNGGAMVESVLRAAEAGLPVRLVHASRGKV-------ARAEPVAALYEAGRVAHRG 387
Query: 431 NHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
+ L L L + G + +S D +D L+
Sbjct: 388 GFAELEDQLCGL----MLGGGYV-------GPGRSPDRADALV 419
>gi|158422729|ref|YP_001524021.1| hypothetical protein AZC_1105 [Azorhizobium caulinodans ORS 571]
gi|158329618|dbj|BAF87103.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 436
Score = 43.9 bits (102), Expect = 0.067, Method: Composition-based stats.
Identities = 65/410 (15%), Positives = 123/410 (30%), Gaps = 58/410 (14%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLL 135
+ GRG GKT A V L RP + +A + L+ + VS L++
Sbjct: 51 VLGGRGAGKTRAGAEWVRGLALGRPPFAPAPVGRIALVAETMGDLREVMVEGVSGLLAVH 110
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P + + + +S E P++ G A
Sbjct: 111 PAAERPRWEPTR---------------RRLVWPNGAVAQGFSAEDPESLRG---PQFEAA 152
Query: 196 INDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + + + L R M + R S + P R
Sbjct: 153 WLDELAKWRRAEAVFDMLQFGLRLGAQPRQ--MVTTTPRPSALLRRLMADPSTVLSRAT- 209
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ + P+F + ++ARYG + R E+ G+ + D+ + RE
Sbjct: 210 TAQNAFHLAPAFLDTVLARYGGT-RLGRQELEGEIIEDRPDALWTRSA--LEAAREAAAP 266
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVL--RRGPVIEHLF---DWSKTDLRTTNNKISGLVE 365
P A +++ D + G D ++ G + H+ + + L
Sbjct: 267 PLARVVVALDPPASSRAGADACGIIAAGIDGEGLVHVLADATAAGLRPAQWAARAIDLWR 326
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
+ DA++ + N G L + V V+ + L+ + +
Sbjct: 327 THEADAVVAEVNQGGEMVRSVLAEVDASV-PVVSVRATRGKYLRAEPVAALYEQGR--VR 383
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
A L + + + +S D D L++
Sbjct: 384 HAGAFP--ALEDEMCDFGPEGLSS-------------GRSPDRLDALVWA 418
>gi|254776419|ref|ZP_05217935.1| phage terminase [Mycobacterium avium subsp. avium ATCC 25291]
Length = 491
Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats.
Identities = 71/462 (15%), Positives = 132/462 (28%), Gaps = 81/462 (17%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS-V 110
R WQ+ L +P+P GAI RG+GKT + A L L+ + P + +
Sbjct: 51 RPWQM--------GMLRPFLDPDPRPLVGAIMGPRGLGKTGIFAALGLYELFCGPDGNEI 102
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+A E L + V + + K +
Sbjct: 103 PIVAVDERMAGRLL--------------KPAAQMVELNDELAARAVVYRDRIEVPGKRST 148
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG------------ILGFLTER 218
+R + T+ +A + DE LG T
Sbjct: 149 LTALPAEAKRIEGL----GTWTLA-LADELGEIDPDTWSTLLLGAGKLDGAMALGIGTPP 203
Query: 219 NANRFWI------MTSNPRRLSGKFYEIFNKPLDDWKRFQIDT-RTVEGIDPSFHEGIIA 271
N + +NP + FYE D ++ + +E +P + +
Sbjct: 204 NRETSVLTDLREACRANPDDRTMAFYEF---SADGFEHHPVSCVHCLELANPQLDDLLSR 260
Query: 272 RYG------LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIA 325
R + Q + F+ + + P PD A +++ D
Sbjct: 261 DRATALLKQTTEGEYRRKRLCQVVTTNESPFVDADTWDGLKAPHPVPD-GADVVIALD-G 318
Query: 326 EEGGDNTVVV---LRRGPVIEHLFDWS-------KTDLRTTNNKISGLVEKYRPDAIIID 375
D+T +V + + P + L W + + I +++R I D
Sbjct: 319 SLKDDSTALVVGTVGKVPHFDRLDAWENPGDEAWRVPVLDVEQAIREAAKRWRVREIAFD 378
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL 435
R+ L G + Q A + R+ + + L + L
Sbjct: 379 PY-LFTRSAQILAAEGLPMVEFR-QSPARQTAATNDLRS---AAVNEQLTHSG---DEVL 430
Query: 436 IQNLKSLKSFIVPNTGELAIESKRVKGAKST--DYSDGLMYT 475
+++ + +A K + + D LM
Sbjct: 431 RRHVLAATVLESDKGIRIA---KVNRSKHAPKIDLCTALMMA 469
>gi|296445591|ref|ZP_06887546.1| protein of unknown function DUF264 [Methylosinus trichosporium
OB3b]
gi|296256836|gb|EFH03908.1| protein of unknown function DUF264 [Methylosinus trichosporium
OB3b]
Length = 442
Score = 43.6 bits (101), Expect = 0.071, Method: Composition-based stats.
Identities = 67/418 (16%), Positives = 126/418 (30%), Gaps = 75/418 (17%)
Query: 82 ISAGRGIGKTTLNA-WLVLWL-----MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I +GRG GKT A W+ +TRP + + + ++ + VS L+
Sbjct: 58 ILSGRGAGKTRAGAEWVKGIARGRPQFATRPLSPIALIGETAADVRDVMIEGVSGILAAH 117
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+S + + +S E P++ G A
Sbjct: 118 SRSERPLWESSRRRLTF---------------DNGVVAQAFSAEDPESLRG---PQFAAA 159
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF---- 251
DE + + +F + + R + +P+ KR
Sbjct: 160 WCDELAK-----WRYAEETW---DMLQFGLRLGDWPR---QLVTTTPRPMPLIKRLLTEN 208
Query: 252 -----QIDTR-TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
+ TR + PSF E ++++YG + R E+ G+ +Q D+ +++E A
Sbjct: 209 GVAVTRAKTRANAANLAPSFLETVLSQYGGT-RLGRQELDGEIVEQRADALWTRDMLERA 267
Query: 306 LNREPCPDPYAPLIMGCD-IAEEGG--DNTVVVLRRGPVIEHLFDWSKTDLRTT-----N 357
R P P +++ D A G D +V G + + +
Sbjct: 268 --RILAPPPLERIVVAIDPPASSGKRADRCGIVA-VGIAQNIVHVLADATVEAARPAQWA 324
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
L K DA++ + N G + V + +L+
Sbjct: 325 RAAIALYHKLSADALVAEVNQ-GGEMVRAVIHEADPSVPVKEARATRGKYLRAAPAAQLY 383
Query: 418 VKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + L + G + S +S D D L++
Sbjct: 384 EQGRAR-HVGAFPA---LEDEMC-----DFGPDG---LSS-----GRSPDRLDALVWA 424
>gi|89054122|ref|YP_509573.1| hypothetical protein Jann_1631 [Jannaschia sp. CCS1]
gi|88863671|gb|ABD54548.1| protein of unknown function DUF264 [Jannaschia sp. CCS1]
Length = 483
Score = 43.6 bits (101), Expect = 0.071, Method: Composition-based stats.
Identities = 62/424 (14%), Positives = 113/424 (26%), Gaps = 75/424 (17%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWL 132
+ GRG GKT A W+ S G V + + Q +
Sbjct: 91 VLGGRGAGKTRAGA---EWVRSMVEGATPEAPGRAKRVALIGETYDQAMAVMVK------ 141
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ S W + ++ + +S P+ G
Sbjct: 142 ----GESGLIACSPPDRVPRWIAGERKLVWPNGAE-----AQVFSANDPEALRGPQFD-- 190
Query: 193 MAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
DE + P + L + I+T+ P R ++ +
Sbjct: 191 -LAWADELAKWPKAQETWDMLQFGL-RLGQHPQQIVTTTP-RNVNVLKDLLARD-GVAHT 246
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ SF + +RYG D+ + R E+ G ++ I+E R
Sbjct: 247 HAPTEANSAYLADSFLTEVRSRYG-DTRLGRQELDGVLLDDVDNALWVRGAIDE--GRLT 303
Query: 311 CPDPYAPLIMGCDI---AEEGGDNTVVVLRRGPVIE-HLFDWS----------KTDLRTT 356
+I+ D G D +V+ G + W
Sbjct: 304 DAPDVTRVIVAVDPPVTGHAGSDACGIVV-VGIIERGDPAQWRAVVLEDCSVQGVSPNQW 362
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNRRT 414
N ++ ++ + N G D + + ++ V V R
Sbjct: 363 ANAAVAAYHRHGASRMVAEVNQGGVMVADTIRTVDPTINLRTVHASTGKV-------ARA 415
Query: 415 ELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
E + + + A L H+ L + + G S D D L++
Sbjct: 416 EPVAALYEQGKVAHLGTHAELEDEMCKMALTGYEGQG-------------SPDRVDALVW 462
Query: 475 TFAE 478
E
Sbjct: 463 ALTE 466
>gi|312149784|gb|ADQ29854.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 304
Score = 43.6 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEG-GDNTVVVL 336
F +NI ++ + P I D A GDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVRGDNTALCV 299
>gi|203288763|ref|YP_002223713.1| hypothetical protein BDU_2013 [Borrelia duttonii Ly]
gi|201084613|gb|ACH94190.1| uncharacterized conserved protein [Borrelia duttonii Ly]
Length = 398
Score = 43.6 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 36/244 (14%), Positives = 79/244 (32%), Gaps = 23/244 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS + F +
Sbjct: 27 SSRGTGKTYDIATVNLERKFAKDGGDTLAVRKKKNKTTQSIHKEILELLSRYNLRREFTI 86
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + G ++ + + + +EA+
Sbjct: 87 SKAKI-------ETKKLIYGRKRAFVFEGGHDTTDLKSYA-------HFKDLWLEEANQF 132
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQIDTRTVEGI 261
+ ++ + ER + M+SNP S Y+ + N+ + R +
Sbjct: 133 TESDIEKLIPTMRERGGRIY--MSSNPVPRSHWLYKRYIANEDNPSVCVIKSTYRDNPFL 190
Query: 262 DP----SFHEGIIARYGLDSDVTRVEVCG-QFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ ++ E Y + R+EV G +F I +E+L Y
Sbjct: 191 NGGDVNAWLEKQKLAYHGNDIGFRIEVLGEEFEFGTARFIKEFTICDESLISRVQGSFYT 250
Query: 317 PLIM 320
+ +
Sbjct: 251 GIHI 254
>gi|195942758|ref|ZP_03088140.1| hypothetical protein Bbur8_08065 [Borrelia burgdorferi 80a]
Length = 312
Score = 43.6 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEG-GDNTVVVL 336
F +NI ++ + P I D A GDNT + +
Sbjct: 265 IFTQINITDDYVFTSP--------IAYLDPAFSVRGDNTALCV 299
>gi|66394679|ref|YP_240816.1| ORF009 [Staphylococcus phage X2]
gi|62636903|gb|AAX92014.1| ORF009 [Staphylococcus phage X2]
Length = 421
Score = 43.6 bits (101), Expect = 0.075, Method: Composition-based stats.
Identities = 40/309 (12%), Positives = 97/309 (31%), Gaps = 35/309 (11%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK++ + ++ + R ++ + + ++ L T+++ ++ + H F+
Sbjct: 33 KGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQKVSHLFK 91
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY---GMAIINDE 199
++ + + + R + P+ ++ ++ I +
Sbjct: 92 VKVS------------PMEITYIPRGNRIIFRGA--QNPERLKSLKDSRFPFSISWIEEL 137
Query: 200 ASGTPDVINLGILGFL----TERNANRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRF 251
A + I L + + + NP + + YE + + +
Sbjct: 138 AEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNTYVHH 197
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
I F + + + R E G+ + F L IEE R+
Sbjct: 198 S-TYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVVPFNNLR-IEEIPQRQY- 254
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
D + + D D V ++ VI + + + + Y
Sbjct: 255 -DTFDNIRNAVDFG-YATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGY 312
Query: 368 RPDAIIIDA 376
+ D + D+
Sbjct: 313 QSDEVFADS 321
>gi|216996657|ref|YP_002333778.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
ACA-1]
gi|216752579|gb|ACJ73283.1| phage terminase, large subunit, PBSX family [Borrelia afzelii
ACA-1]
Length = 450
Score = 43.6 bits (101), Expect = 0.076, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKIDYIDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIAITDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITQDYVFTSP--------IAYLDPAFSIGGDNTALCV 299
>gi|265753755|ref|ZP_06089110.1| terminase [Bacteroides sp. 3_1_33FAA]
gi|263235469|gb|EEZ20993.1| terminase [Bacteroides sp. 3_1_33FAA]
Length = 521
Score = 43.6 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 72/240 (30%), Gaps = 33/240 (13%)
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQF---PQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+P++ + A G + + + G F P+++ IP + N P +
Sbjct: 244 NPNYIGSVAASGGK---MAQAIIEGNFNVDPEENEKIPIPSTSAQGVFNNNPAVN--GDK 298
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
+ D+A+ G DN V + G + SK+ R + ++ I +
Sbjct: 299 WITVDLADYGTDNLVALAWDGFHAYDILILSKSTPRENAMAVKTFAFEHGTAESHIIFDA 358
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL--- 435
T R + + L + ++++ +E +L L
Sbjct: 359 TAGRYFNDYIPDAVPYISLNKPFGLYQLTAMTVKDM-CYIRLCKMIEEGNLTFDDKLAVQ 417
Query: 436 ----------------IQNLKSLKSFIVPNTGELAIESKRVK-----GAKSTDYSDGLMY 474
S+ F +G+ + +K+ +S D D
Sbjct: 418 TYTHQNLKYKVTVENEFMEECSVVRFDDMQSGKKRLWNKKKMNQMLGKGRSMDLLDPCAM 477
>gi|319409256|emb|CBI82900.1| phage-related protein [Bartonella schoenbuchensis R1]
Length = 441
Score = 43.6 bits (101), Expect = 0.083, Method: Composition-based stats.
Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 11/194 (5%)
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNAN--RFWIMTSNPRRLSGKFYEIFNKPLDD- 247
+ DEA + ++ L E N +T NP R + + F D
Sbjct: 122 RILLCWVDEAEPVTETAWQTLIPTLREEGENWHCELWVTWNPLRENAPVEKRFRAVKDPH 181
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIEE 304
K +I+ R + A + + G++ Q ++ + L +E
Sbjct: 182 IKGVEINWRDNPQFPDRLNRAREADFTQRPEQYNHIWEGEYLQAVQGAYYQKLLLEAEQE 241
Query: 305 ALNREPCPDPYAPLIMGCDIAEEG--GDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKI 360
DP + + DI G D T + + + G I L D+ + + + I
Sbjct: 242 GRITHVPRDPLIQIKIFWDIGGTGAKADATALWVAQFIGREIRVL-DYYEAQGQPLSEHI 300
Query: 361 SGLVEKYRPDAIII 374
+ ++ A+++
Sbjct: 301 GWMCQRGYDKALMV 314
>gi|317152167|ref|YP_004120215.1| hypothetical protein Daes_0447 [Desulfovibrio aespoeensis Aspo-2]
gi|316942418|gb|ADU61469.1| hypothetical protein Daes_0447 [Desulfovibrio aespoeensis Aspo-2]
Length = 590
Score = 43.6 bits (101), Expect = 0.083, Method: Composition-based stats.
Identities = 46/293 (15%), Positives = 92/293 (31%), Gaps = 40/293 (13%)
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ Y + + + + + H + + + TP + T N+
Sbjct: 255 VYIDEYFWITKFNELYKVASAMAAHKKWRITLF-----STPSAVTHEAYDLWTGDRFNKR 309
Query: 224 WIMTSNPRRLSGKFYEIFNK----PLDDWKR-FQIDTRTVEGIDPSFHEGIIARYGLDSD 278
W +R +E + P W++ I G D E + +Y +D
Sbjct: 310 WSR--QAKRKEFPSFEAMQRGVVCPDKVWRKVITIKDAEAGGCDLFDFEDLNLQY--STD 365
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEG 328
R +F D+ + L+ +E P P+ G D +
Sbjct: 366 EFRNLFMCEFVD-DLQAVFRLHNLEACYGDMDEWTDFNPDAARPFGNLPVWGGYDPSRNR 424
Query: 329 GDNTVVVL----RRGPVIEHLFDWSKTDLRTT--NNKISGLVEKYRPDAIIIDANNTGAR 382
D + V+L + G + L + D T +I L +++ I ID G
Sbjct: 425 DDASFVILAPPLQPGGMFRVLARYKWVDKSYTWQAQRIKELTQQFNFVHIGIDVTGPGIG 484
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL 435
+ ++ A+ + + +T L +K D +E + + L
Sbjct: 485 VFESVQA---------FFPAAMPITYGVQTKTTLVLKAKDVIESGRIQWDASL 528
>gi|328857391|gb|EGG06508.1| hypothetical protein MELLADRAFT_36161 [Melampsora larici-populina
98AG31]
Length = 824
Score = 43.6 bits (101), Expect = 0.084, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 9/151 (5%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA-EVSKWLSLLPNKHWFEMQS 145
G+GKT L+L G + +A + + W E+ K+ L W
Sbjct: 237 GMGKTIQTISLILSDRKAGDGKQTLVIAPT---VAIIQWRNEIEKFTKGLKVNVWHGGNR 293
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYS---TMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ D++ S + + + R + E R + + H+ + +I DEA
Sbjct: 294 STDKKTMKSYDIVLTSYAVLESSFRRQNSGYRKFGELRKEASL-LHSIHWHRVILDEAHN 352
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRL 233
D G E A W ++ P +
Sbjct: 353 IKDRSCNTAKGAF-ELQATFKWCLSGTPLQN 382
>gi|160897385|ref|YP_001562967.1| PBSX family phage terminase large subunit [Delftia acidovorans
SPH-1]
gi|160362969|gb|ABX34582.1| phage terminase, large subunit, PBSX family [Delftia acidovorans
SPH-1]
Length = 433
Score = 43.6 bits (101), Expect = 0.086, Method: Composition-based stats.
Identities = 41/295 (13%), Positives = 77/295 (26%), Gaps = 25/295 (8%)
Query: 147 SLHPAPWYSDVLHCSLG-IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI-INDEASGTP 204
++ PW + I S+ +R + + + DEA
Sbjct: 78 AIEDEPWLAAYYDVGDKYIKSRDGRITFAFAGLDR--NIASIKSKGRLLLCWVDEAEPVT 135
Query: 205 DVINLGILGFLTERNA--NRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGI 261
D ++ L E N +T NP+R S + F K + + +
Sbjct: 136 DEAWTTLIPTLREEGTDWNAELWVTWNPKRKSAPVEKRFKGSSDPRMKYVRCNWKDNPKF 195
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII----EEALNREPCPDPYAP 317
+ + G + ++ +I+ + + R P DP
Sbjct: 196 PALLERVRLRDLAERPEQYAHIWEGDYATVIEGAYFASHIVKARQDNRIGRVPA-DPLMT 254
Query: 318 LIMGCDIAEEGGDNTVVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
L DI G + G I L + + +++ + Y I
Sbjct: 255 LRAFVDIGGTGARADAFAMWIAQFVGKEIRVLDYYEQVGQPLSSHLNWMREKGYDKAQIW 314
Query: 374 IDANNTGARTC------DYLEMLGYHVYRVLGQKRAVDLEFCRNRR---TELHVK 419
+ + L GY V V Q + R +
Sbjct: 315 LPHDGATQDKVHDVSYESALRQAGYTVTVVPNQGKGAAKARIEAGRRLFGSMWFN 369
>gi|319899324|ref|YP_004159421.1| hypothetical protein BARCL_1179 [Bartonella clarridgeiae 73]
gi|319403292|emb|CBI76851.1| phage-related protein [Bartonella clarridgeiae 73]
Length = 442
Score = 43.6 bits (101), Expect = 0.087, Method: Composition-based stats.
Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 9/193 (4%)
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNAN--RFWIMTSNPRRLSGKFYEIFN-KPLDD 247
+ DEA D ++ L E + +T NP R + + F +
Sbjct: 122 RILLCWVDEAEPVTDAAWQILIPTLREEGKDWHSELWVTWNPCRENAAVEKRFRFTKDPN 181
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
K +I+ R + A + + G++ Q ++ ++E
Sbjct: 182 VKGVEINWRDNPKFPAKLNRDRKADLEQRPEQYQYIWEGEYLQAMQGAYYQKLLLEAEQE 241
Query: 308 REPCPDPYAPLI---MGCDIAEEG--GDNTVVVLRR-GPVIEHLFDWSKTDLRTTNNKIS 361
P PLI + DI G D T + + + + D+ + + + I
Sbjct: 242 GRITKVPRDPLIQIKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIG 301
Query: 362 GLVEKYRPDAIII 374
+ +K A+++
Sbjct: 302 WICQKGYEKALMV 314
>gi|16127022|ref|NP_421586.1| hypothetical protein CC_2790 [Caulobacter crescentus CB15]
gi|221235816|ref|YP_002518253.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
gi|13424390|gb|AAK24754.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220964989|gb|ACL96345.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
Length = 567
Score = 43.6 bits (101), Expect = 0.087, Method: Composition-based stats.
Identities = 62/405 (15%), Positives = 109/405 (26%), Gaps = 60/405 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GKT A + W P ++I + ++ + + +
Sbjct: 199 GGRGAGKTFAGARWITWNALAYPSQALI--GPTLHDVREVM----------IEGPSGLKA 246
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG--HHNTYGMAIINDEAS 201
+ W + + +S E P++ G H DE
Sbjct: 247 MGGPAYRPRWEASRRRLVWPN-----GAVAYAFSAEDPESLRGPQFHAA-----WADEFC 296
Query: 202 GTPDVINLGI---LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
P G + T P R + +
Sbjct: 297 AWPKPAETLAMLRFGLRLGEDPRLVVTTTPKPHRAL----KTLMAEPGVALTRAGTSANA 352
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ P+F + + YG + E+ G + + A R P +
Sbjct: 353 GNLAPAFLRTLASLYGGT-RLAAQELDGVVVE-TDGGLFRAEDL--ARCRAARPARLDRV 408
Query: 319 IMGCD-IAEEGGDNT--VVVLRRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRPDAII 373
++ D A GD VVV RR L D + + DA++
Sbjct: 409 VVAVDPPATATGDACGIVVVGRRDDRAFVLADETARGLSPAGWAGRAVAAARAWTADALV 468
Query: 374 IDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS 433
+AN G L RV + ++ L+ + L + +
Sbjct: 469 AEANQGGDMVRSVLAQAD-PPCRVKLVRASLGKRARAEPVAALYEQGRV-LHCGAFVALE 526
Query: 434 GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ L S G+L S D +D L++ +E
Sbjct: 527 EELMALGS---------GDLE---------HSPDRADALVWAVSE 553
>gi|282598984|ref|YP_003358901.1| gp17 terminase DNA packaging enzyme large subunit [Deftia phage
phiW-14]
gi|257219054|gb|ACV50069.1| gp17 terminase DNA packaging enzyme large subunit [Deftia phage
phiW-14]
Length = 585
Score = 43.6 bits (101), Expect = 0.091, Method: Composition-based stats.
Identities = 50/286 (17%), Positives = 95/286 (33%), Gaps = 39/286 (13%)
Query: 130 KWLSLLPNKHWFEMQSLSLH-----PAPWYSDVLHCSLGIDSKHYSTMCRTYS-EERPDT 183
K ++L NK ++ + + P++ + + M + +S PDT
Sbjct: 139 KNWAVLANKSSAALEVMDRYRVMFQELPYFMQIGAVRFNLAEVELENMSKVFSGTSDPDT 198
Query: 184 FVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
G G+ DE++ T + L+ + + I+TS P G FY+I+
Sbjct: 199 VRGK-ALNGIYW--DESAFTARDEEFWTSTFPVLSSGDTS-KAILTSTPNGARGVFYKIW 254
Query: 242 NKPLDD-------WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ D + R + D ++ E I + G + E F
Sbjct: 255 KESEDPNSDVYNGFARLAVPWYRHPRRDEAWKELSIRKIGPTK--FKQEHELSFL-GSSG 311
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIM--GCD------IAEEGG----DNTV-VVLRRGPV 341
IP +E P + I D IA+ GG D +V ++ +
Sbjct: 312 CLIPPMTLERMGFINPLREDEHLKIFVEPVDDHKYIGIADSGGGVGADYSVCTIIDVTEI 371
Query: 342 IEHLFDWSKTD---LRTTNNKISGLVEKYRPDAIII-DANNTGART 383
+ + + +I L Y ++I + N+ G +
Sbjct: 372 PYRVVAKYRNNEIAPIVFPYQIVSLCGLYNDCPVLIENNNDVGGQV 417
>gi|260433583|ref|ZP_05787554.1| putative phage terminase, large subunit [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417411|gb|EEX10670.1| putative phage terminase, large subunit [Silicibacter
lacuscaerulensis ITI-1157]
Length = 504
Score = 43.2 bits (100), Expect = 0.092, Method: Composition-based stats.
Identities = 52/298 (17%), Positives = 86/298 (28%), Gaps = 54/298 (18%)
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL------WLMSTRPGISVICLANSE 117
++ P V ++ GRG GK+TL+A L L W + I +A
Sbjct: 33 NKFIDGAYGPGINVGVLSV--GRGNGKSTLSAILALGELVGAWSDA---KEREILIAAKT 87
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
Q W V LP + + D ++ + R S
Sbjct: 88 QQQAQICWHYVVSLSKTLPEDVQAAITIRR---------QPRFEIQFDDENGPHILRAIS 138
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTP----DVINLGILGFLTERNANRFWIMT--SNPR 231
+ T I DE P D + +L L++R+ I T SN
Sbjct: 139 ADGKSAL----GTSPTLAILDERGHWPLAQGDELEAALLTGLSKRDGKALIISTSASNDM 194
Query: 232 RLSGKF--------YEIFNKPLDDWKRFQIDTR--TVEGID----------PSFHEGIIA 271
+ Y ++P + + G I
Sbjct: 195 HPFSLWLDREAPGVYRQEHRPEPGLPADDVASLIIANPGTKYGIGPSLKRLKDDAALAIE 254
Query: 272 RYGLDSDVTRVEVCGQFPQQDI-DSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEE 327
R G R+ + Q+D D I L + ++ + P P ++G D+
Sbjct: 255 RGGSALSRFRLLSRNERVQEDNRDILISLDDWLK--CETDALPPKSGPCVIGLDLGGS 310
>gi|154489097|ref|ZP_02029946.1| hypothetical protein BIFADO_02409 [Bifidobacterium adolescentis
L2-32]
gi|154083234|gb|EDN82279.1| hypothetical protein BIFADO_02409 [Bifidobacterium adolescentis
L2-32]
Length = 1055
Score = 43.2 bits (100), Expect = 0.092, Method: Composition-based stats.
Identities = 46/242 (19%), Positives = 75/242 (30%), Gaps = 33/242 (13%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
+S E+ + + L D W + F + P P+E S ++ Q M+
Sbjct: 194 LSEEIESQISESKPLTD-AWLKLYEEDFKKYA----PQRPNRKPIEKTSQSQTIQPNAMQ 248
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
V +N + I + G GKT L+A+ V Q+
Sbjct: 249 V--EALMNLAQLRKQGESRAIIVSATGTGKTYLSAFDV-------------------RQV 287
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K +++ + K Q + P S D K+ +T S R
Sbjct: 288 KPNRMLYIAQ-QEQILKKAEESFQKVLGCPKSELGLFSGGSKESDRKYVFATVQTMS--R 344
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG-KFYE 239
P+T I+ DE + N MT+ P R G +E
Sbjct: 345 PETLAQFDADEFDYILVDE---VHHAAAESYKRVIDHFQPNFMLGMTATPERTDGANIFE 401
Query: 240 IF 241
+F
Sbjct: 402 LF 403
>gi|87307615|ref|ZP_01089759.1| hypothetical protein DSM3645_28877 [Blastopirellula marina DSM
3645]
gi|87289785|gb|EAQ81675.1| hypothetical protein DSM3645_28877 [Blastopirellula marina DSM
3645]
Length = 429
Score = 43.2 bits (100), Expect = 0.093, Method: Composition-based stats.
Identities = 52/348 (14%), Positives = 93/348 (26%), Gaps = 63/348 (18%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW---------- 100
P Q E + H + GR GKT +
Sbjct: 26 PLPHQREILRDRHRHKR--------------VICGRRWGKTGAGLIAAILGHGDPSGPGH 71
Query: 101 LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC 160
G ++ +A + Q K E + V
Sbjct: 72 WKGMVDGGTLYWVAPTFAQSKKI------------------ERDIMLAFANSGLVYVKSE 113
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN-LGILGFLTERN 219
S +T + G +I DE + + + L++R
Sbjct: 114 GRIEHPSGGSITIKTAAAPVSLRGEGLDG-----MIGDEFAFVRKEVWSDALRPALSDRR 168
Query: 220 ANRFWIMTSNPRRLSGKFYEIFNKPLDD--WKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
++ T P + + + D +K +Q T ID + + + G S
Sbjct: 169 GWSMFLTT--PNGPN-WMKDQHDLDGVDPTYKSWQCPTSDNCLIDQAELDSALLDLGQAS 225
Query: 278 DVTRVEVCGQFPQQDIDSFIPL--NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT--- 332
E QF F L + + P ++G D ++ D +
Sbjct: 226 --FDQEYRAQFVDVSGAEFSGLYFQTPKFWFDDWPPESEIRFRVIGLDPSKGKNDKSDYS 283
Query: 333 ---VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
++ L I D + D+R K L + P +I++ N
Sbjct: 284 AFVMLALAGDGQIYVDADIERRDVRKIAEKAFELCALFEPTGMIVETN 331
>gi|307275425|ref|ZP_07556567.1| phage uncharacterized protein [Enterococcus faecalis TX2134]
gi|306507813|gb|EFM76941.1| phage uncharacterized protein [Enterococcus faecalis TX2134]
Length = 418
Score = 43.2 bits (100), Expect = 0.098, Method: Composition-based stats.
Identities = 45/305 (14%), Positives = 89/305 (29%), Gaps = 35/305 (11%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG KTT A + LM P ++I L ++T + E+ ++ + + +F+
Sbjct: 52 RGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDT---DVV--EIILQVAKVLSSKYFKTLV 106
Query: 146 LSLH--PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+L+ + + + G H +I D+
Sbjct: 107 FALYGVELVLLKETTTEIDTNLKTSSRGTSQLLGMGIYASLTGKHAD---IVITDDIVNI 163
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI---FNKPLDDWKRF---QIDTRT 257
D ++ + N + G+F ++K K + D
Sbjct: 164 KDRVSRA-----EREKTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKMPNVKKFDCYE 218
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
ID + + + + + + F I+ N +
Sbjct: 219 TGLIDKEQRKAL--QQSMTPSLFAANYELKHIADSESLFTAPTYID-NTNLIYNGVAH-- 273
Query: 318 LIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
D A GGD+T + + G +I W K +I L + Y+
Sbjct: 274 ----IDAAYGGGDSTAFTIFKEQKDGTIIGFGKKWQKHVDDCLP-EILQLHQYYQAGTFY 328
Query: 374 IDANN 378
+ N
Sbjct: 329 TETNG 333
>gi|219053375|ref|YP_002455734.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
gi|226234324|ref|YP_002775459.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|216752668|gb|ACJ73353.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
gi|226202138|gb|ACO37810.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
Length = 396
Score = 43.2 bits (100), Expect = 0.098, Method: Composition-based stats.
Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKNKTTQSIHKEILELLSRYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKAKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYAHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFSADDIEMLIPTMREQGGRIY--MSSNPVPKSHWLYKRYLANEDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ E + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGE 219
>gi|57234875|ref|YP_181104.1| hypothetical protein DET0357 [Dehalococcoides ethenogenes 195]
gi|57225323|gb|AAW40380.1| hypothetical protein DET0357 [Dehalococcoides ethenogenes 195]
Length = 441
Score = 43.2 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 44/291 (15%), Positives = 83/291 (28%), Gaps = 45/291 (15%)
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG 213
+ D+ G + S E VG NT + + DEA
Sbjct: 71 FGDIYQTEGGYIIRLNQARAVFLSAEPSANVVG--NTAHLLLEVDEAQDVNQEKYSKEFK 128
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRFQIDTRTVEGIDPSFHE 267
+ N ++ S EI + ++ + F+ D V +P++
Sbjct: 129 PM-GATTNVTTVLYGTTWDSSSLLEEIKRQNIEKEHKDGLKRHFRYDWEEVAAHNPAYLA 187
Query: 268 GIIARY---GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC---PDPYAPLIMG 321
++ G + + + P + PC P+ + G
Sbjct: 188 YALSEKDRLGENHPLFLTQYR-LLPVSGGGGMFSSEQLGLLKGSHPCQLYPENGKVYVAG 246
Query: 322 CDIAEE-----GGDNTVVVLRRGPVIEHLFD----------------------WSKTDLR 354
D+A E T V LRR ++ + + W
Sbjct: 247 LDLAGEDVQSAADLPTAVNLRRDSIVLTIAELDYTFAKAPFNLPQVRLVCHCSWQGARHA 306
Query: 355 TTNNKISGLVEK-YRPDAIIIDANNTGARTCDYLEM-LGYHVYRVLGQKRA 403
K+ L+ K ++ + +DA G +L LG + + Q +
Sbjct: 307 LLYEKLVELLGKVWKCRKVAVDATGLGQPVASFLRESLGSRILPFVFQPSS 357
>gi|331662794|ref|ZP_08363717.1| putative phage terminase [Escherichia coli TA143]
gi|331061216|gb|EGI33180.1| putative phage terminase [Escherichia coli TA143]
Length = 407
Score = 43.2 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 107/362 (29%), Gaps = 55/362 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKWLSLLPNKHW 140
AG G GKT + + PGI+ A + Q++ + EV+ L +
Sbjct: 28 AGFGSGKTWVGCGGICKGTWEHPGINQGYFAPTYPQIRDIFYPTVEEVAADWGLNVKINE 87
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + CR S E+P T VG + DE
Sbjct: 88 GNKEVHFYYGRQYRGTTI--------------CR--SMEKPQTIVGFKIGNAL---VDEL 128
Query: 201 SGTPDV----INLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPL-------DDW 248
P I+ + + + R I + YE F K + +
Sbjct: 129 DILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYEQFVKAVREKTELASLY 188
Query: 249 KRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
Q T E + + ++ Y ++ + + GQF + + N
Sbjct: 189 GLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNLTSGTVYH-QFDRKLNN 245
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL---- 363
E P P+ +G D + VLR G + D I
Sbjct: 246 CEEVEQPGEPIYIGMDFNVGKMAGIIHVLRLGLPCAVTEIINAYDTPDMIRIIKERFWLY 305
Query: 364 ----VEKYRPDAIIIDANN-----TGARTCD--YLEMLGYHVYRVLGQKRAVDLEFCRNR 412
K R I DA+ + A T D L+ G++V V+ + +
Sbjct: 306 DGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV--VVNSSNPPVKDRVNSM 363
Query: 413 RT 414
Sbjct: 364 NA 365
>gi|269836053|ref|YP_003318281.1| hypothetical protein Sthe_0020 [Sphaerobacter thermophilus DSM
20745]
gi|269785316|gb|ACZ37459.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
20745]
Length = 497
Score = 43.2 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 58/385 (15%), Positives = 100/385 (25%), Gaps = 72/385 (18%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--G 107
PR +Q E M V A + I R GK A L+ +L++ G
Sbjct: 29 RPRRYQAEPMRAVAAAVVARARGDRSHPADFGIVFSRQAGKDEALAQLIAYLLTLFQRAG 88
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
S++ + + L ++ + G +
Sbjct: 89 GSIVVALPT-----------LRPQGILARDRLIERLTCERARALGLRP---RVQDGTIVR 134
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
C S G T + ++ +E + + M
Sbjct: 135 LGRAACHFVSAGPQSNARGQ--TASLLLVANECQDIRPERWDSVFAPMAASTDAVTLSMG 192
Query: 228 SNPRRLS---------------GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
+ + +F P W Q+ + V + E IA
Sbjct: 193 TVWTADTLLARQMRHLAALEAEDGRRRLFRVP---W---QVVAQEVPSYGR-YVERQIAL 245
Query: 273 YGLDSDVTRVEVC--------GQFPQQDIDSF----------IPLNIIEEALNREPCPDP 314
G D R E G FP +P E AL + +
Sbjct: 246 LGADHPFIRTEYELLELDGQGGLFPPSRQGQMQGDHPPLTRAVPGE--EYALLLDVAGEE 303
Query: 315 YAPLIMG--CDIAEEGGDNTVVVLR--------RGPVIEHLFDWSKTDLRTTNNKISGLV 364
+ G D A + V+R R V+ W+ + ++ L
Sbjct: 304 EESVDPGRAYDPAARRDSTALTVVRVVHQDARPRYEVVRRYL-WTGVKHTALHAQLVDLA 362
Query: 365 EK-YRPDAIIIDANNTGARTCDYLE 388
+R +++DA GA +L
Sbjct: 363 RHVWRARYVVVDATGVGAGLASFLR 387
>gi|296393586|ref|YP_003658470.1| terminase [Segniliparus rotundus DSM 44985]
gi|296180733|gb|ADG97639.1| Terminase [Segniliparus rotundus DSM 44985]
Length = 498
Score = 42.8 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 70/388 (18%), Positives = 118/388 (30%), Gaps = 70/388 (18%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ E + H L + P A R GK+ L L LW + + G+ V
Sbjct: 45 PWQ----EWLLTHALEVRPDGLPRFRTVIALAARQNGKSLLMIVLALWRVYVKGGVVVGT 100
Query: 113 ---LANSETQLKTTLWAEV----------------------SKWLSLLPNKHWFEMQSLS 147
LANSE W E K L L + +
Sbjct: 101 AQDLANSE-----KAWGEAVELAEGTPELASEVLHVDKTNGKKSLRLHSGAQYRIAAASR 155
Query: 148 LHPAPWYSDVLHCSLGIDSKH---YSTMCRTYSEERPDTF------VGHHNTYGMAII-- 196
+ +D++ + + ++ + +T + RPD G H + +A +
Sbjct: 156 RGARGFTADLILLDELREHQSFDSWAAVTKT-TMARPDAQVWCLSNAGDHLSVVLAHLRN 214
Query: 197 -----NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
D G PD + + A + G K W +
Sbjct: 215 IAHRQLDWPDGKPDHVEDQAP----DDEAEDDSVGIFEWSAPPG----CDPKDRHAWAQA 266
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDS-DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
V + + I + Y D V EV Q+P P + +
Sbjct: 267 N-PALGVTITERA----IASAYATDPAPVFAAEVLCQWPLTVTPGPFPPGSWDSTRDDNS 321
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS--GLVEKYR 368
+P ++G D+A +TV + G + + T R ++ ++ + +
Sbjct: 322 TIATDSPRVVGLDMAWN--RSTVTLALAGRRDDGMAHVEITAQRAGSDWVAPWLAERREK 379
Query: 369 PDAIIIDANNTGA-RTCDYLEMLGYHVY 395
A+I+ AN A LE G V
Sbjct: 380 IAAVIVQANGAPASSLVADLEAAGLPVI 407
>gi|114569469|ref|YP_756149.1| hypothetical protein Mmar10_0918 [Maricaulis maris MCS10]
gi|114339931|gb|ABI65211.1| protein of unknown function DUF264 [Maricaulis maris MCS10]
Length = 450
Score = 42.8 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 66/409 (16%), Positives = 113/409 (27%), Gaps = 59/409 (14%)
Query: 84 AGRGIGKTTLNA-WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GKT A W+ + T + + + ++ + + +
Sbjct: 67 GGRGAGKTRAGAEWVRHRALRTV--SRIALVGPTFNDVREVM----------IEGPSGLK 114
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
++ + + S+ Y+ +S E D G Y DE +
Sbjct: 115 HLGSAMERPRYEASRKRLVFPSGSQAYA-----FSAEDADGLRGPQFDYA---WGDEFAA 166
Query: 203 TPDV---INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
PD ++ +G T P + ++ Q
Sbjct: 167 WPDPQRVLDTLRMGVRLGGAPRILLTTTPRPIPALKALVKAWDPRGPIRVTHQPTAANAA 226
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ P F E + A YG S + R EV G + IE A ++
Sbjct: 227 NLAPGFVEALNAAYG-GSMLGRQEVEGLLIDDPDGALWTRPKIEAARLAAGQMPELDRIV 285
Query: 320 MGCDIAEEGG---DNT--VVVLRRGP------VIEHLFDWSKTDLRTTNNKISGLVEKYR 368
+ D GG D VV G V+ + + + + Y
Sbjct: 286 VALDPPATGGPRSDECGIVVAGAHGEGPARIAVVLADLSFGPALPADWAARAASAFDDYS 345
Query: 369 PDAIIIDANNTGARTCDYLEML--GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF 426
DA+I +AN G L+ G V V + R E +
Sbjct: 346 ADALIAEANQGGEMVRSVLQAAAPGLPVRLVHASRGKR-------ARAEPVAALYAAGRV 398
Query: 427 ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
L + + F P+ + S D D L++
Sbjct: 399 RHARPFPALEDQMCA---FGAPDGPK-----------SSPDRVDALVWA 433
>gi|308188181|ref|YP_003932312.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1]
gi|308058691|gb|ADO10863.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1]
Length = 190
Score = 42.8 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 317 PLIMGCDIAEE---GGDNTVVVL----RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKY 367
+ +G D A+ G VV+ G L W D R + I L ++Y
Sbjct: 9 EVWIGYDPAKGTQNGDSAGCVVMAPPAVPGGKFRILERHQWRGMDFRAQADAIRTLTQQY 68
Query: 368 RPDAIIIDANNTGARTCDYLE 388
I ID+ + G + ++
Sbjct: 69 NVTYIGIDSTSVGLGVYENVK 89
>gi|58040880|ref|YP_192844.1| Phage DNA packaging protein [Gluconobacter oxydans 621H]
gi|58003294|gb|AAW62188.1| Phage DNA Packaging Protein [Gluconobacter oxydans 621H]
Length = 435
Score = 42.8 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 63/436 (14%), Positives = 119/436 (27%), Gaps = 87/436 (19%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
G GKT L V+ PG ++ KH
Sbjct: 26 RGGSRSGKTFLLVRAVVIRAVKAPGSR------------HGIFR-----HRFNALKHTII 68
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY--------SEERPDTFVGHHNTYGMA 194
+ + D+ + D Y T+ S +R + +G
Sbjct: 69 GDTFPKVMRLCFPDLPYTLNRTD--WYVTLPNGSEILFHGLDSSDRTEKILGL---EFAT 123
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMT-SNPRRLSGKFYEIFNKPL-------- 245
+ +EAS +L L ++ +NP S Y +F + +
Sbjct: 124 VYMNEASQISYAARNMLLTRLAQKTCLSVKEYIDANPPTTSHWLYSLFEQKIEPKSGEPL 183
Query: 246 ---DDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDIDSFIPLN 300
DD+ QI+ + + P + + A + R G + + L+
Sbjct: 184 PYPDDYATMQINPDSNRANLSPEYLAQLEAL----PEKERQRFLFGNYQTAIDGALWTLD 239
Query: 301 IIEEALN-----REPCPDPYAPLIMGCDIAE------EGGDNTVVVL----RRGPVIEHL 345
I R +++ D + D + + R G
Sbjct: 240 RIRRLAQVTNETRAAVLADMRRIVVSVDPSGCSGNEDYKSDEIGISVCGIDRDGNGHVFA 299
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+ ++ + D I+ + N GA R + V
Sbjct: 300 DLTCRAGPAGWAKVAIDAMDLWGADRIVAEKNFGGAMV-----EQTIRSVRATAPVKLVT 354
Query: 406 LEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKG 462
+ R E +A E + +H L + L +G +G
Sbjct: 355 ASRGKTARAE---PIAALYEQGKVFHHGRFPDLEEQLC-----QFSASGF--------QG 398
Query: 463 AKSTDYSDGLMYTFAE 478
A+S D +D +++ +E
Sbjct: 399 ARSPDRADSMVWGLSE 414
>gi|29374972|ref|NP_814125.1| hypothetical protein EF0333 [Enterococcus faecalis V583]
gi|29342430|gb|AAO80196.1| conserved hypothetical protein TIGR01630 [Enterococcus faecalis
V583]
Length = 418
Score = 42.8 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 45/305 (14%), Positives = 89/305 (29%), Gaps = 35/305 (11%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG KTT A + LM P ++I L ++T + E+ ++ + + +F+
Sbjct: 52 RGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDT---DVV--EIILQVAKVLSSKYFKTLV 106
Query: 146 LSLH--PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+L+ + + + G H +I D+
Sbjct: 107 FALYGVELVLLKETTTEIDTNLKTSTRGTSQLLGMGIYASLTGKHAD---IVITDDIVNI 163
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI---FNKPLDDWKRF---QIDTRT 257
D ++ + N + G+F ++K K + D
Sbjct: 164 KDRVSRA-----EREKTKLQYQELQNVKNREGRFINTGTPWHKEDAISKMPNVKKFDCYE 218
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
ID + + + + + + F I+ N +
Sbjct: 219 TGLIDKEQRKAL--QQSMTPSLFAANYELKHIADSESLFTAPTYID-NTNLIYNGVAH-- 273
Query: 318 LIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
D A GGD+T + + G +I W K +I L + Y+
Sbjct: 274 ----IDAAYGGGDSTAFTIFKEQKDGTIIGFGKKWQKHVDDCLP-EILQLHQYYQAGTFY 328
Query: 374 IDANN 378
+ N
Sbjct: 329 TETNG 333
>gi|59712621|ref|YP_205397.1| terminase, ATPase subunit [Vibrio fischeri ES114]
gi|59480722|gb|AAW86509.1| terminase, ATPase subunit [Vibrio fischeri ES114]
Length = 588
Score = 42.8 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 29/243 (11%), Positives = 64/243 (26%), Gaps = 35/243 (14%)
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
ID G + + +Y D V + F SF + +
Sbjct: 332 ITIDDAIEGGATFFNMDKLRRKY-PDKSVFNNLLRCVFLDDAS-SFFSIKSLLACKTDTD 389
Query: 311 CPDPYA----------PLIMGCDIAEEG-----GDNTVVV----LRRGPVIEHLFDWS-- 349
+++G D G D ++V + +G +
Sbjct: 390 NWKDVDLESLHPVGRREVLVGYDPRGGGQGEGADDAGLIVSLKPIIKGGAFRFIERVRLK 449
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ I + +KY + ID G+ + + L++
Sbjct: 450 GSSYEDQAAAIEAICKKYNVVYLAIDVGGVGSAVAELVR---------KFYPGLTTLDYS 500
Query: 410 RNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKST 466
+ + K + + L L+ + ++ + ++ S R K
Sbjct: 501 PEMKRMMAYKAREIINAGRLQFDNEWDDLVHSFLMIRQHTTKMSNQITFVSARNKVGSHA 560
Query: 467 DYS 469
D +
Sbjct: 561 DLA 563
>gi|327198111|ref|YP_004306641.1| terminase large subunit [Enterococcus phage EFRM31]
gi|297179206|gb|ADI23907.1| terminase large subunit [Enterococcus phage EFRM31]
Length = 574
Score = 42.8 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 48/295 (16%), Positives = 92/295 (31%), Gaps = 52/295 (17%)
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLW-LMST-RPGIS--VICLANSETQLKTTLWAEVSKW 131
K IS R GK+ L A + L+ + P S ++ AN++ Q
Sbjct: 97 RFRKVYISLARKNGKSILVAGISLYEFLLGQYPQASRQIVAAANTKDQ------------ 144
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
++ N ++++L I+ + + S + D+ G
Sbjct: 145 AGIVFNMLKSQLKALRAVSDGTRKVTKVNKKDIEHLEDESTVKPLSSDA-DSLDGLDVLC 203
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD---- 247
G+ EA T + + +++ I+++ + L+G + I +
Sbjct: 204 GVLDEYGEAKSTA--MIEVLESSQSQQLQGLILIISTTTKNLNGPMHSIEYPFITKLLNE 261
Query: 248 -----------WKRFQIDTRTVE---------GIDPSFHEGI-------IARYGLDSDV- 279
W+ + E + HE + +A Y D+
Sbjct: 262 EVEADAYLALCWEMDSLSEVDDEANWIKSNPLFENAQLHETMYEHKVNSLAEYKAKGDMS 321
Query: 280 -TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
+ + Q DSFI E +P P+ +G D+A G V
Sbjct: 322 GWLTKEMNFWVQSSQDSFIDKESWEAVKQTQPYDIKGRPVYIGLDLARTGDMTAV 376
>gi|238694889|ref|YP_002922083.1| Dda DNA helicase [Enterobacteria phage JSE]
gi|220029025|gb|ACL77960.1| Dda DNA helicase [Enterobacteria phage JSE]
Length = 463
Score = 42.8 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 34/177 (19%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + H + + + + G GKT + ++V R G++ + LA
Sbjct: 8 DMLTDGQKHAFDVLMKRIEQKKHTTVRGAAGTGKTAMMKFIVQ--EMVRRGVTGVVLATP 65
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
Q K L V + + LH L ++ +Y
Sbjct: 66 THQAKKVLSKAVGR-----------------------QAFTLHALLRLNPTNYEDTQVFE 102
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
++ P II DEAS + + + N I +P +L
Sbjct: 103 QKDTPKL------DDVQIIIVDEASMVDKKLFDIL---MKSINGRIVIIAVGDPHQL 150
>gi|157311312|ref|YP_001469355.1| Dda DNA helicase [Enterobacteria phage Phi1]
gi|149380516|gb|ABR24521.1| Dda DNA helicase [Enterobacteria phage Phi1]
Length = 463
Score = 42.8 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 34/177 (19%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + H + + + + G GKT + ++V R G++ + LA
Sbjct: 8 DMLTDGQKHAFDVLMKRIEQKKHTTVRGAAGTGKTAMMKFIVQ--EMVRRGVTGVVLATP 65
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
Q K L V + + LH L ++ +Y
Sbjct: 66 THQAKKVLSKAVGR-----------------------QAFTLHALLRLNPTNYEDTQVFE 102
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
++ P II DEAS + + + N I +P +L
Sbjct: 103 QKDTPKL------DDVQIIIVDEASMVDKKLFDIL---MKSINGRIVIIAVGDPHQL 150
>gi|49474625|ref|YP_032667.1| phage related protein [Bartonella quintana str. Toulouse]
gi|49240129|emb|CAF26575.1| phage related protein [Bartonella quintana str. Toulouse]
Length = 402
Score = 42.8 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 11/191 (5%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNA--NRFWIMTSNPRRLSGKFYEIFNK-PLDDWKR 250
DEA + ++ L E N +T NP R + + F + K
Sbjct: 86 LCWVDEAEPVTETAWQTLIPTLREEGKDWNAELWVTWNPCRENAPVEKRFRNVENPNIKG 145
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+I+ R + A + G++ Q ++ ++E L
Sbjct: 146 AEINWRDNPLFPQKLNRDRKADLQQRPENYNHIWEGEYLQSVQGAYYQKALLEAELEGRI 205
Query: 311 CPDPYAP---LIMGCDIAEEG--GDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGL 363
P P + + DI G D T + + + G I L D+ + + + +
Sbjct: 206 TNVPRDPLMQIKIFWDIGGTGAKADATALWVAQFIGREIRVL-DYYEAQGQPLAEHVGWV 264
Query: 364 VEKYRPDAIII 374
++ A+++
Sbjct: 265 FQRGYEKALMV 275
>gi|294011207|ref|YP_003544667.1| hypothetical protein SJA_C1-12210 [Sphingobium japonicum UT26S]
gi|292674537|dbj|BAI96055.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length = 437
Score = 42.8 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 64/406 (15%), Positives = 114/406 (28%), Gaps = 61/406 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AGRG GKT A V + + P + + + + + + E
Sbjct: 58 AGRGFGKTRAGAEWVRSVAESDPKARIALVGATLGEARAVM----------------VEG 101
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKH-YSTMCRTYSEERPDTFVGHHNTYGMAIINDE--- 199
S L APW++ + + Y ++ G ++G DE
Sbjct: 102 ASGILAVAPWWNRPVFAPALRKLVWPNGAVATLYGAAEAESLRGPQFSHG---WADEIAK 158
Query: 200 -ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
A G + ++G T P L + D V
Sbjct: 159 WAGGQA-AWDNLMMGMRLGGAPRVLATTTPRPVPLVRGL--VARAGGDVVVTRGRTADNV 215
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ F + YG + R E+ G+ ++ + +++E +
Sbjct: 216 AHLADGFLAAMERSYGGT-RLGRQELDGELIEEVEGALWSRDLLERCRVAHVRG-GLTRV 273
Query: 319 IMGCD-IAEEGGDNT---VVVLRRGPVIEHLFDWS--KTDLRTTNNKISGLVEKYRPDAI 372
++ D A GD VV L + D + SG + D +
Sbjct: 274 VVAVDPPASAHGDACGIVVVGLGEDRRAYVIADATVEGATPEGWARAASGAALVHGADRV 333
Query: 373 IIDANNTGARTCDYLE--MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW---LEFA 427
+ +ANN GA L V V + V R E + + +
Sbjct: 334 VAEANNGGAMVESVLRAAEAALPVRLVHASRGKV-------ARAEPVAALYEAGRVVHRG 386
Query: 428 SLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
+ L ++ P +S D +D L+
Sbjct: 387 GFAELEDQLCGLMLGGGYVGP--------------GRSPDRADALV 418
>gi|315181719|gb|ADT88632.1| terminase, ATPase subunit [Vibrio furnissii NCTC 11218]
Length = 574
Score = 42.8 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 36/244 (14%), Positives = 72/244 (29%), Gaps = 37/244 (15%)
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
ID +G E + +Y D V + F F ++ A +
Sbjct: 318 ITIDDAIEKGATFFNMEKLRRKY-PDKTVFDNLLRCVFLDDSASIFALKALL--ACKTDS 374
Query: 311 -----------CPDPYAPLIMGCDI----AEEGGDNTVVVL-----RRGPVIEHLFDWS- 349
P A +++G D EG D+ +V+ R+G V +
Sbjct: 375 SLWKDVDHNKARPAGNAEVLVGYDPRGGGQGEGSDDAGLVVALKPKRKGGVFRLIERARL 434
Query: 350 -KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
+ I + EKY + ID + G+ + + + +
Sbjct: 435 KGSSYEQQALAIKAMTEKYNVVHLAIDVSGVGSAVAELVRKFYPSLIELDYSPEV----- 489
Query: 409 CRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
+R + K + + L L+ + ++ + ++ S R K
Sbjct: 490 ---KRM-MVYKAREIINDGRLQFDGEWDDLVHSFLMIRQQTTKASNQVTFISNRSKVGSH 545
Query: 466 TDYS 469
D +
Sbjct: 546 ADLA 549
>gi|260769184|ref|ZP_05878117.1| terminase ATPase subunit [Vibrio furnissii CIP 102972]
gi|260614522|gb|EEX39708.1| terminase ATPase subunit [Vibrio furnissii CIP 102972]
Length = 574
Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 36/244 (14%), Positives = 72/244 (29%), Gaps = 37/244 (15%)
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
ID +G E + +Y D V + F F ++ A +
Sbjct: 318 ITIDDAIEKGATFFNMEKLRRKY-PDKTVFDNLLRCVFLDDSASIFALKALL--ACKTDS 374
Query: 311 -----------CPDPYAPLIMGCDI----AEEGGDNTVVVL-----RRGPVIEHLFDWS- 349
P A +++G D EG D+ +V+ R+G V +
Sbjct: 375 SLWKDVDHNKARPAGNAEVLVGYDPRGGGQGEGSDDAGLVVALKPKRKGGVFRLIERARL 434
Query: 350 -KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
+ I + EKY + ID + G+ + + + +
Sbjct: 435 KGSSYEQQALAIKAMTEKYNVVHLAIDVSGVGSAVAELVRKFYPSLIELDYSPEV----- 489
Query: 409 CRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
+R + K + + L L+ + ++ + ++ S R K
Sbjct: 490 ---KRM-MVYKAREIINDGRLQFDGEWDDLVHSFLMIRQQTTKASNQVTFISNRSKVGSH 545
Query: 466 TDYS 469
D +
Sbjct: 546 ADLA 549
>gi|240137990|ref|YP_002962462.1| hypothetical protein MexAM1_META1p1321 [Methylobacterium extorquens
AM1]
gi|240007959|gb|ACS39185.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
Length = 421
Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 100/296 (33%), Gaps = 43/296 (14%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
L +E H P P + A+ GRG GKT A W+ G V
Sbjct: 9 LRLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGA---EWVRGLAQGDPVFTPE 65
Query: 115 NSET-QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
E L +A+V + P+ + L P W G +
Sbjct: 66 PVERIALVGETFADVRDVMIEGPSG-LLALPRLGGAPPVWQPSRRRVMFGN-----GAVA 119
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRR 232
+S E PD+ G A+ +DE + T + +F + PR
Sbjct: 120 LAFSAEEPDSLRG---PQFGAVWSDEVAK-----WREAE---TTYDMIQFGLRLGTHPRG 168
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTV----------EGIDPSFHEGIIARYGLDSDVTRV 282
L +P+ +R D RTV + + PSF E ++ RY + + R
Sbjct: 169 LVT----TTPRPVPLIQRLLADPRTVVTRSRTADNAQNLAPSFLEEVVGRY-AGTRLGRQ 223
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVV 335
E+ G+ + D+ + IE A E P + + + D + G D +V
Sbjct: 224 ELDGELIEDRPDALWTRDSIERARVFEAPPLQH--IAVAIDPPASSGVGADACGIV 277
>gi|213865421|ref|ZP_03387540.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 85
Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
I W D R + I L ++Y I ID+ G
Sbjct: 17 RILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVY 60
>gi|213586958|ref|ZP_03368784.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 67
Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
I W D R + I L ++Y I ID+ G
Sbjct: 16 RILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVY 59
>gi|213162921|ref|ZP_03348631.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
Length = 113
Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
I W D R + I L ++Y I ID+ G
Sbjct: 16 RILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVY 59
>gi|291484314|dbj|BAI85389.1| hypothetical protein BSNT_02825 [Bacillus subtilis subsp. natto
BEST195]
Length = 577
Score = 42.8 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 43/278 (15%), Positives = 88/278 (31%), Gaps = 43/278 (15%)
Query: 89 GKTTLNAWLVLWLMSTRPGIS----VICLANSETQLKTTLWAEVSKWLSLLPNKHWF--E 142
GK+ L A L L+ + + ANS Q KT + +S L + +K F +
Sbjct: 112 GKSVLVAGLSLYELIYGEAPKFDRQIYATANSRGQAKTV-FKMISMQLKKIRSKSKFMRK 170
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKH--------------YSTMCRTYSEERPDTFVGHH 188
+ + + D Y T T E ++ G
Sbjct: 171 WTKIIQNEIRYLKDDCVIMPLSRDTDNLDSLNVLIGILDEYHTASNTKMMEVLESSQGQQ 230
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD- 247
+ + II+ +G + G + + + S + F ++ + ++
Sbjct: 231 DQGLILIIS--TAGFK------LNGPMYSQEYPYVDDILSGRKENENYFAIVYEQDDEEE 282
Query: 248 ------WKRFQIDTRTVEGIDPSFHEGIIARYGL-----DSDVTRVEVCGQFPQQDIDSF 296
W + VEG+ + + + D + T V+ + +SF
Sbjct: 283 IYDESTWIKSN-PLLEVEGLQKKILKNLRKKLKEALDKDDLNGTLVKNFNIWQSASSESF 341
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV 334
I N ++ P+ +G D++ D + +
Sbjct: 342 INGNDWKKRGVDVAPDITGKPVYIGIDLSRT-DDLSAL 378
>gi|253583367|ref|ZP_04860565.1| helicase [Fusobacterium varium ATCC 27725]
gi|251833939|gb|EES62502.1| helicase [Fusobacterium varium ATCC 27725]
Length = 1624
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 35/287 (12%), Positives = 81/287 (28%), Gaps = 24/287 (8%)
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
P F G + D G + G G + + N R+ + S
Sbjct: 1262 GNPSHFQGDERDVVFLSMVDSNDGVGPLAMKG-EG-IEDSNKKRYNVAVS---------- 1309
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
W +D + + Y D +E + +++ DS
Sbjct: 1310 ---RAKDQLWIVHSLDMAN--DLKKGDIRRGLLEYSEDPKAFMIE---ESVKKNSDSVFE 1361
Query: 299 LNIIEEALNREPCPDPYAPL-IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR--T 355
+ + R + D+ + V + G + K D+
Sbjct: 1362 EEVAKYLYARGYNIIQQWEVGAYRIDMVAFFENKRVAIECDGERWHSTEEQVKQDIERQD 1421
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
+ + R + +T + LE G + + + + E N+
Sbjct: 1422 ILERCGWDFIRIRGSRYFRNPEDTMKEVLEKLEKKGIYPEKTKSENYEIREEELLNKIKS 1481
Query: 416 LHVKMADWLEFASLINHSGLIQNLKSLKSFIVP-NTGELAIESKRVK 461
++ + + I + + + +++ + L IE+ ++K
Sbjct: 1482 RSFEIMELWKEQGNIEEIEITKEVNNIEDKEIKIPELVLKIENSKIK 1528
>gi|325848842|ref|ZP_08170352.1| putative phage terminase, large subunit [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480486|gb|EGC83548.1| putative phage terminase, large subunit [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 462
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 67/205 (32%), Gaps = 24/205 (11%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL--SGKFYEIFNK------PL 245
+I DEA D + +T N IM P SG + F K P
Sbjct: 154 LLIIDEAQEYTDDQESALKYTVTSS-KNPQTIMCGTPPTPISSGMVFVNFRKQCLTSRPN 212
Query: 246 DDWKRFQI--------DTRTVEGIDPSF-----HEGIIARYGLDSDVTRVEVCGQFPQQD 292
+ + D+ +PS I G D ++ G + +
Sbjct: 213 NAYWAEWSVPEMSDIHDSELWYKTNPSLGTIFTERSIEDEIGSDETDFNIQRLGLWISYN 272
Query: 293 IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP-VIEHLFDWSKT 351
S I + L + P + +G +G + ++ V + + +
Sbjct: 273 QKSAI-TEKEWQRLKLKSLPILTGEMHVGIKFGNDGTNVSLAVACKTLSKMIFIEAIDCQ 331
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDA 376
++R +N I + K +P +++ID
Sbjct: 332 NVRNGDNWIIDFLVKTKPKSVVIDG 356
>gi|254560550|ref|YP_003067645.1| hypothetical protein METDI2093 [Methylobacterium extorquens DM4]
gi|254267828|emb|CAX23679.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
Length = 421
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 62/296 (20%), Positives = 98/296 (33%), Gaps = 43/296 (14%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
L +E H P P + A+ GRG GKT A W+ G V
Sbjct: 9 LRLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGA---EWVRGLAYGDPVFSPE 65
Query: 115 NSET-QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
E L +A+V + P+ + L P W G +
Sbjct: 66 PVERIALVGETFADVRDVMIEGPSG-LLALPRLGGAPPVWQPSRRRVVFGN-----GAVA 119
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRR 232
+S E PD+ G A+ +DE + + +F + PR
Sbjct: 120 LAFSAEEPDSLRG---PQFGAVWSDEVAK-----WREAEAT---YDMIQFGLRLGTHPRG 168
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTV----------EGIDPSFHEGIIARYGLDSDVTRV 282
L +P+ +R D RTV + + PSF E ++ RY + + R
Sbjct: 169 LVT----TTPRPVPLIRRLLADPRTVVTRSRTADNAQNLAPSFLEEVVGRY-AGTRLGRQ 223
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVV 335
E+ G+ + D+ + IE A R P + + D + G D +V
Sbjct: 224 ELDGELIEDRPDALWTRDSIERA--RVSEVPPLQRIAVAIDPPASSRVGADACGIV 277
>gi|224797098|ref|YP_002642985.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|224554508|gb|ACN55891.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
Length = 396
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 75/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIHKEILELLSIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKAKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYAHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFSSDDIEMLIPTMREQGGRIY--MSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ + + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGDVQAWLEKQKLAYHGNDIGFRIEVLGE 219
>gi|168029927|ref|XP_001767476.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681372|gb|EDQ67800.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1075
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 10/134 (7%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
A++A RG GK+ + ++ A S LKT L+ + K + K
Sbjct: 279 VALTAARGRGKSAALGVAIA-GAVAFGYSNIFVTAPSPENLKT-LFEFIFKGFDAMEYKE 336
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + + ++ ++ + + E+ ++ DE
Sbjct: 337 HIDYDLVESTNSAFNKAIVRVNIFRQHRQTIQYIQPKDHEKLAQAE--------LLVIDE 388
Query: 200 ASGTPDVINLGILG 213
A+ P I +LG
Sbjct: 389 AAAIPLPIVKALLG 402
>gi|320590344|gb|EFX02787.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
Length = 2423
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 25/166 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RPG V+ +A L E + W L
Sbjct: 1194 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAP-----MKALVRERIKDWGRRLAGPAGLR 1248
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA- 200
+ L+ P + + + + + + R++ G+ + II DE
Sbjct: 1249 LVELTGDNTPDTRTIGEADVIVTTPEKWDGISRSWQT------RGYVRKVSLVII-DEIH 1301
Query: 201 --SGTPDVINLGI------LGFLTERNANRFWI--MTSNPRRLSGK 236
+G I I +G T + + +N L+
Sbjct: 1302 LLAGDRGPILEIIVSRMNYIGAATGSSVRLLGMSTACANATDLASW 1347
>gi|66395738|ref|YP_240074.1| ORF009 [Staphylococcus phage 37]
gi|62636161|gb|AAX91272.1| ORF009 [Staphylococcus phage 37]
Length = 419
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 53/375 (14%), Positives = 122/375 (32%), Gaps = 43/375 (11%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ E++ H + + + + GRG GK++ A +++ L+ R ++ + L
Sbjct: 4 KLSELIPEHFHSLWHAAKDKGKLNIVAKGGRGSGKSSDIAIIIV-LLIMRYPVNALILRK 62
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ L +++ ++ ++++ H F+++ + + + R
Sbjct: 63 IDNTLALSVFEQIKWAINVMGVSHLFKIKVS------------PMEITYVPRGNKMVFRG 110
Query: 176 YSEERPDTFVGHHN---TYGMAIINDEASGTPDVINLGILGFL----TERNANRFWIMTS 228
+ P+ + Y +A I + A + I L + + T
Sbjct: 111 A--QNPERIKSLKDAQFPYAIAWIEELAEFKTEDEVTTITNSLLRGELDNGLFYKFFYTY 168
Query: 229 NPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
NP + + YE +P + + I F E A ++ R E
Sbjct: 169 NPPKRKQSWVNKKYESSFQPDNTFVHHS-TYLNNPFIAKEFIEEAKAAKAINELRYRWEY 227
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGP 340
G+ +P N + + D + + D D V ++
Sbjct: 228 LGEAIGS---GVVPFNNLRIETIPKEQFDTFDNIRNAVDFG-YATDPLAFVRWHYDKKKR 283
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
+I + + + + Y+ D I D+ ++ L+ + + R+ G
Sbjct: 284 IIYAVDEHYGVQISNREFANWLKKKGYQSDEIYADS--AEPKSIAELKQE-HSIRRIKGV 340
Query: 401 KRAVDL----EFCRN 411
K+ D E N
Sbjct: 341 KKGPDSVEHGEQWLN 355
>gi|13242438|ref|NP_077457.1| DNA packaging terminase subunit 1 [Cercopithecine herpesvirus 9]
gi|11036590|gb|AAG27219.1|AF275348_40 unknown [Cercopithecine herpesvirus 9]
Length = 745
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 49/152 (32%), Gaps = 22/152 (14%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT L+ LMST GI V A + K + FE L
Sbjct: 271 GKTWFIVSLIALLMSTFRGIKVGYTA------------HIRK-----ATEPVFEEIKARL 313
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTM---CRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
W+ + +S +S C T G + DEA+
Sbjct: 314 --EQWFGTERIEHVKGESITFSFSDGCCSTAVFSSSHNTNGIRGQTFNLLFVDEANFIRP 371
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
I+GFL + N ++ ++N + S F
Sbjct: 372 DAVQTIVGFLNQTNCKIIFVSSTNTGKASTSF 403
>gi|226315677|ref|YP_002775693.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
gi|226202054|gb|ACO38634.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
Length = 396
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 75/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKNKTTQSIHKEILELLSIHNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKAKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYAHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFSADDIEMLIPTMREQGGRIY--MSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ + + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219
>gi|260431843|ref|ZP_05785814.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415671|gb|EEX08930.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 176
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 39/127 (30%), Gaps = 9/127 (7%)
Query: 182 DTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
+ G II DEA PD F + T N R SG FYE
Sbjct: 49 ENARGETAD---LIIGDEACFIQPDEALTAFFPMRRSTG-RIFLLSTPNGTR-SGYFYET 103
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
+ + +R + + D R + R E ++ S + N
Sbjct: 104 WESDANV-RRIRARSMDTTREDRLAQIEFDRR-TMSDATFRREHLCEWVGAGE-SLLSWN 160
Query: 301 IIEEALN 307
+E A+
Sbjct: 161 TLERAMQ 167
>gi|289432252|ref|YP_003462125.1| hypothetical protein DehalGT_0302 [Dehalococcoides sp. GT]
gi|288945972|gb|ADC73669.1| conserved hypothetical protein [Dehalococcoides sp. GT]
Length = 420
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 49/295 (16%), Positives = 86/295 (29%), Gaps = 59/295 (20%)
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG 213
++D+ H G + S E + VG NT + + DEA
Sbjct: 87 FTDIYHTEGGYIIRLNQARAVFLSAEPSASVVG--NTAHLLLEVDEAQDVNKEKY----- 139
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFN-------------KPLDDWKRFQIDTRTVEG 260
+ T+ L G ++ F+ + + F+ D V
Sbjct: 140 ---SKEFKPMGATTNVTTVLYGTTWDSFSLLEEIKEQNIEKEQKDGLKRHFRYDWEAVAA 196
Query: 261 IDPSFHE---GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC---PDP 314
+P++ R G + + + P ++ PC P+
Sbjct: 197 HNPAYLAYALSEKERLGENHPLFLTQYR-LLPVSGGGGMFSNEQLDLLKGNHPCQVYPEK 255
Query: 315 YAPLIMGCDIAEE-----GGDNTVVVLRRGPVIEHL----------------------FD 347
+ G D+A E G T V LRR + + +
Sbjct: 256 GKVYVAGLDLAGEDSQTGGISPTTVNLRRDSSVLTIAQLDYTFAKAPYNLPQVRLVCHYS 315
Query: 348 WSKTDLRTTNNKISGLVEK-YRPDAIIIDANNTGARTCDYLEM-LGYHVYRVLGQ 400
W T K+ L+ K ++ + +DA G +L LG + V Q
Sbjct: 316 WQGTRHALLYEKLVELLGKVWKCRKVAVDATGLGQPVASFLRESLGSRILPVPFQ 370
>gi|298290710|ref|YP_003692649.1| hypothetical protein Snov_0699 [Starkeya novella DSM 506]
gi|296927221|gb|ADH88030.1| protein of unknown function DUF264 [Starkeya novella DSM 506]
Length = 428
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 65/414 (15%), Positives = 116/414 (28%), Gaps = 65/414 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---SVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ GRG GKT A V L R G + +A S L+ + VS L++ P
Sbjct: 42 VLGGRGAGKTRAGAEWVRALAFGRAGPPAGRIALVAESLGDLREVMVEGVSGLLAVHPRG 101
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ + + +S + P++ G A D
Sbjct: 102 ERPTWEPTR---------------KRLEWPNGAVAQGFSADDPESLRGPQFD---AAWCD 143
Query: 199 EASGTPDVINLGILGFLTERNANRFW-----IMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
E + M + R + + P R
Sbjct: 144 ELAK-----WRYAQAAFDNLQFGLRLGARPRQMVTTTPRPTTLLRALLADPRTAVTRM-G 197
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE--PC 311
+ P F E ++ RY + + R E+ G+ + D+ +IE
Sbjct: 198 TAENAAHLAPHFLETVVGRY-AGTRLGRQELDGELIEDRPDALWSRALIEAGREAAAPEM 256
Query: 312 PDPYAPLIMGCDI---AEEGGDNTVVV---LRRGPVIEHLFDWSKTDLRTT--NNKISGL 363
+++ D + + D +V + R ++ L D S L T + GL
Sbjct: 257 VRQMERIVVAVDPPASSRKHADACGLVAAGIDRDGLVHVLADESAQGLTPTGWGGRAVGL 316
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ D ++++ N G L + V V + R E +
Sbjct: 317 FHRLEADRVVVEVNQGGEMVKSILAGIDPSVPVREVRATRGKW-------LRAEPVAALY 369
Query: 422 DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ L L + G +S D D L++
Sbjct: 370 EQGRVRHAGAFPALEDELC-----DFGSDGL--------SNGRSPDRLDALVWA 410
>gi|225552551|ref|ZP_03773490.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225370879|gb|EEH00310.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 42.4 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I ++A+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNKATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNVATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPSYKARVLLGEWIASTDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI + + P I D A GGDNT + +
Sbjct: 265 IFTQINITQNYVFTSP--------IAYLDPAFSIGGDNTALCV 299
>gi|224534955|ref|ZP_03675523.1| conserved hypothetical protein [Borrelia spielmanii A14S]
gi|224513774|gb|EEF84100.1| conserved hypothetical protein [Borrelia spielmanii A14S]
Length = 285
Score = 42.4 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 4/122 (3%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDID 294
F + + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIATFKTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASTDS 264
Query: 295 SF 296
F
Sbjct: 265 IF 266
>gi|23335598|ref|ZP_00120832.1| hypothetical protein Blon03000707 [Bifidobacterium longum DJO10A]
gi|189440021|ref|YP_001955102.1| phage terminase large subunit [Bifidobacterium longum DJO10A]
gi|189428456|gb|ACD98604.1| Phage terminase large subunit [Bifidobacterium longum DJO10A]
Length = 477
Score = 42.4 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 55/376 (14%), Positives = 105/376 (27%), Gaps = 60/376 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISV 110
WQ + ++ A + + + + + R GKT W+ + + PG+ +
Sbjct: 37 DVWQRQINRIILAKSADGFWSA-----RNTVLSIPRQTGKTYDIGWVAIHRAARTPGMRI 91
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH---CSLGIDSK 167
+ A + S++ + + D H + G +
Sbjct: 92 VWTA---------------QHFSVIKDTFESLCAIVLRPEMSGLVDPDHGISLAAGKEEI 136
Query: 168 HYSTMCRT-YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ R + G ++ DEA D +L R N I
Sbjct: 137 RFRNGSRIFFRARERGALRGV--KKIALLVIDEAQHLSDSAMASMLPT-QNRAWNPQTIY 193
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDT---------RTVEGIDPSFHEGIIARY---- 273
P E F + D + + + R + +D Y
Sbjct: 194 MGTPPGPRDNG-EAFTRLRDKARAGRTHSTLYVEFTADRDADPLDRQQWRKANPSYPSHT 252
Query: 274 ----------GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
L D R E G + + + I EEA P + G D
Sbjct: 253 SDESIANLWENLTGDDFRREALGIWDEHALSRAIDRRQWEEATI--ERRRPGGVMSFGID 310
Query: 324 IAEEGGDNTV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK--YRPDAIIIDANN 378
+ + T+ + L ++ T+ T L++K + +++ID +
Sbjct: 311 MNPQRTRLTIGACMRYDDNTAHIELAEYRDTNQDGT-MWAVNLIDKVWEQTASLVIDGQS 369
Query: 379 TGARTCDYLEMLGYHV 394
L G V
Sbjct: 370 PATALLPDLAQAGVTV 385
>gi|254471818|ref|ZP_05085219.1| phage DNA Packaging Protein [Pseudovibrio sp. JE062]
gi|211959020|gb|EEA94219.1| phage DNA Packaging Protein [Pseudovibrio sp. JE062]
Length = 428
Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 55/322 (17%), Positives = 104/322 (32%), Gaps = 35/322 (10%)
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG-ILGFLTERNANRFW 224
+ R +S E P+ G A DEA + +L F
Sbjct: 119 EWPNGAIARAFSSEDPEALRGPQFD---AAWCDEAGKWSNATETFDMLQFGLRLGTQPQQ 175
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
++T+ P+ S ++ + + +F + + RYG + R E+
Sbjct: 176 LVTTTPK--STPLLKMLLQDQRVVVTKAGTKSNAAFLAEAFLQQMAERYGGT-RLGRQEL 232
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG---DNT-VVVLRRGP 340
G+ + D+ E +NR +++ D G D ++
Sbjct: 233 DGELIEDREDALFARKWFE--MNRVRHVPELKRIVVAIDPPATSGKSADACGIIAAGITE 290
Query: 341 VIE--HLFDWSKTDLRTTN--NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
E L D + LR ++ L + D ++ + N G + +E + V
Sbjct: 291 AAELFVLRDRTAQGLRPAAWADQAIRLYHELEADCLLAEVNQGGEMVREVIEGVDASV-- 348
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIE 456
++V + RR E +A E ++H G+ L+ + + G
Sbjct: 349 ---PVKSVHATRSKRRRAE---PVALLYEQGR-VHHCGVFPELED-ELADFGSGGL---- 396
Query: 457 SKRVKGAKSTDYSDGLMYTFAE 478
KS D D L++ E
Sbjct: 397 ----SNGKSPDRLDALVWAITE 414
>gi|330507947|ref|YP_004384375.1| phage terminase, large subunit, PBSx family [Methanosaeta concilii
GP-6]
gi|328928755|gb|AEB68557.1| phage terminase, large subunit, PBSx family [Methanosaeta concilii
GP-6]
Length = 422
Score = 42.0 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 9/152 (5%)
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ ++ + DE + P+ +L L+++ A ++ NP
Sbjct: 101 ADNTSSYKKIEGESLLRAYVDEGTTIPENFTNMLLSRLSDKGA-CLYLTC-NPETPRNYI 158
Query: 238 YEIF--NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
Y + + + K ++ + + + Y + + G + +
Sbjct: 159 YRNWIARQDELNIKVWKFTLDDNPYLPLEYKRDLEKEYPKGTVFYDRFILGNWVAAEGRV 218
Query: 296 FIPLNIIEEALNREPCPDPYAP--LIMGCDIA 325
F ++ E P P L +G D
Sbjct: 219 FGLFA---RGMHCEVPPATLRPKELRIGADYG 247
>gi|121606179|ref|YP_983508.1| hypothetical protein Pnap_3289 [Polaromonas naphthalenivorans CJ2]
gi|120595148|gb|ABM38587.1| protein of unknown function DUF264 [Polaromonas naphthalenivorans
CJ2]
Length = 596
Score = 42.0 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 20/137 (14%)
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAP------- 317
+ + Y ++ + F S P+ +++ + + + Y P
Sbjct: 359 IDELRLEY--STEEFENLLMCGFIDDTQ-SVFPMAELQKCMVDSWVDWEDYKPFTARPYG 415
Query: 318 ---LIMGCDIAEEGGDNTVVVLRR----GPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
+ +G D + G VVL G L W D I + ++
Sbjct: 416 YRAVWVGYDPSHTGDTAGCVVLAAPLTPGGKFRVLERHQWRGLDFEAQAEAIRQITLRFN 475
Query: 369 PDAIIIDANNTGARTCD 385
I ID G
Sbjct: 476 VQHIGIDTTGLGQGVYQ 492
>gi|301092109|ref|XP_002896227.1| N-acetyltransferase 10 [Phytophthora infestans T30-4]
gi|262094857|gb|EEY52909.1| N-acetyltransferase 10 [Phytophthora infestans T30-4]
Length = 1102
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 57/163 (34%), Gaps = 17/163 (10%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAIS--AGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
Q ++ A L V + + + ++ AGRG GK+ + ++
Sbjct: 254 QARTLDQAKA-ILTFVEAVSEKTLRSTVALTAGRGRGKSAALGMSLA-GAVAYGYSNIFV 311
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A S LKT + V K L K + + + + V+ ++ + +
Sbjct: 312 TAPSPENLKTV-FEFVFKGFDALKYKEHLDYEIVQSTNPEFNHAVVRVNIFREHR----- 365
Query: 173 CRTYSEERPDTFVGHHNT--YGMAIINDEASGTPDVINLGILG 213
+T +P HH + DEA+ P + +LG
Sbjct: 366 -QTIQYIQPT----HHEKLAQAELVAIDEAAAIPLPVVKNLLG 403
>gi|94497317|ref|ZP_01303888.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
gi|94423180|gb|EAT08210.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
Length = 437
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 71/412 (17%), Positives = 130/412 (31%), Gaps = 63/412 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AGRG GKT A V + P + + S + ++ + E
Sbjct: 58 AGRGFGKTRAGAEWVRGIAEADPAARIALVGASLGEARSVM----------------VEG 101
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKH-YSTMCRTYSEERPDTFVGHHNTYGMAIINDE--- 199
+S L AP ++ + + + P+ G ++G DE
Sbjct: 102 ESGLLAIAPHWARPAYAPALRRLTWPNGAVAMLFGAADPEGLRGPQFSHG---WADEIAK 158
Query: 200 -ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
ASG + ++G R+ T P L + + DD + T
Sbjct: 159 WASGEA-AWHNLMMGMRLGRDPRVLVTTTPRPVPL---VRSLVARDGDDVVVTRGRTADN 214
Query: 259 E-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
E + P F + A YG + R E+ G+ ++ + +IE+ P
Sbjct: 215 EANLAPGFVAAMTAGYGGT-RLGRQELDGELIEEVEGALWTRALIEQCRV-VHVPGVLTR 272
Query: 318 LIMGCD-IAEEGGDNTVVV---LRRGPVIEHLFDWSKTDLRTT--NNKISGLVEKYRPDA 371
+++ D A GGD +V + + D S + R ++ + D
Sbjct: 273 VVVAVDPPASVGGDACGIVVAGMGGDGRAYVIADASVSGARPEGWARAVAAAAMVHGADR 332
Query: 372 IIIDANNTGARTCDYLE--MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF--- 426
++ +ANN GA L V V + R E + +
Sbjct: 333 VVAEANNGGAMVESVLRAAEKTLPVKLVHASRGKA-------ARAEPVAALYEAGRVAHR 385
Query: 427 ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + L + ++ P +S D +D L++ +E
Sbjct: 386 GAFPELEDEMCGLLAGGGYVGP--------------GRSPDRADALVWAMSE 423
>gi|323352542|gb|EGA85041.1| Kre33p [Saccharomyces cerevisiae VL3]
Length = 966
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 10/136 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F A++AGRG GK+ + +S ++ + S LKT L+ + K L
Sbjct: 187 FTVALTAGRGRGKSAALGISIAAAVS-HGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 244
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + ++ + D H T+ ++ ++
Sbjct: 245 QEHIDYDIIQSTNPDFNKAIVRVDIKRD--HRQTIQYIVPQDHQVLGQAE------LVVI 296
Query: 198 DEASGTPDVINLGILG 213
DEA+ P I +LG
Sbjct: 297 DEAAAIPLPIVKNLLG 312
>gi|323335941|gb|EGA77219.1| Kre33p [Saccharomyces cerevisiae Vin13]
Length = 961
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 10/136 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F A++AGRG GK+ + +S ++ + S LKT L+ + K L
Sbjct: 187 FTVALTAGRGRGKSAALGISIAAAVS-HGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 244
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + ++ + D H T+ ++ ++
Sbjct: 245 QEHIDYDIIQSTNPDFNKAIVRVDIKRD--HRQTIQYIVPQDHQVLGQAE------LVVI 296
Query: 198 DEASGTPDVINLGILG 213
DEA+ P I +LG
Sbjct: 297 DEAAAIPLPIVKNLLG 312
>gi|190409119|gb|EDV12384.1| hypothetical protein SCRG_03266 [Saccharomyces cerevisiae RM11-1a]
Length = 1056
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 10/136 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F A++AGRG GK+ + +S ++ + S LKT L+ + K L
Sbjct: 277 FTVALTAGRGRGKSAALGISIAAAVS-HGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + ++ + D H T+ ++ ++
Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRD--HRQTIQYIVPQDHQVLGQAE------LVVI 386
Query: 198 DEASGTPDVINLGILG 213
DEA+ P I +LG
Sbjct: 387 DEAAAIPLPIVKNLLG 402
>gi|151944405|gb|EDN62683.1| killer toxin resistant protein [Saccharomyces cerevisiae YJM789]
gi|207341763|gb|EDZ69729.1| YNL132Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273837|gb|EEU08759.1| Kre33p [Saccharomyces cerevisiae JAY291]
gi|259149229|emb|CAY82471.1| Kre33p [Saccharomyces cerevisiae EC1118]
Length = 1056
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 10/136 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F A++AGRG GK+ + +S ++ + S LKT L+ + K L
Sbjct: 277 FTVALTAGRGRGKSAALGISIAAAVS-HGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + ++ + D H T+ ++ ++
Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRD--HRQTIQYIVPQDHQVLGQAE------LVVI 386
Query: 198 DEASGTPDVINLGILG 213
DEA+ P I +LG
Sbjct: 387 DEAAAIPLPIVKNLLG 402
>gi|6324197|ref|NP_014267.1| Kre33p [Saccharomyces cerevisiae S288c]
gi|1730777|sp|P53914|KRE33_YEAST RecName: Full=UPF0202 protein KRE33; AltName: Full=Killer
toxin-resistance protein 33
gi|854505|emb|CAA86893.1| orf16 [Saccharomyces cerevisiae]
gi|1302072|emb|CAA96014.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285814522|tpg|DAA10416.1| TPA: Kre33p [Saccharomyces cerevisiae S288c]
Length = 1056
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 10/136 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F A++AGRG GK+ + +S ++ + S LKT L+ + K L
Sbjct: 277 FTVALTAGRGRGKSAALGISIAAAVS-HGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + ++ + D H T+ ++ ++
Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRD--HRQTIQYIVPQDHQVLGQAE------LVVI 386
Query: 198 DEASGTPDVINLGILG 213
DEA+ P I +LG
Sbjct: 387 DEAAAIPLPIVKNLLG 402
>gi|260890025|ref|ZP_05901288.1| 3-isopropylmalate dehydratase, small subunit [Leptotrichia
hofstadii F0254]
gi|260860631|gb|EEX75131.1| 3-isopropylmalate dehydratase, small subunit [Leptotrichia
hofstadii F0254]
Length = 191
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 6/135 (4%)
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY-----LEMLGYH 393
G +W + RT N + +Y+ I+I +N G + L+ G+H
Sbjct: 37 GFGQYVFDEWRYNEDRTDNMDFNLNKPEYKTGTILITGDNFGCGSSREHAAWALQDYGFH 96
Query: 394 VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGEL 453
V G + + N + + AD LE A L + ++ +L++ K
Sbjct: 97 VIVAGGYSGIFYMNWLNNGHLPITLPEADRLELAKLPGDAKVVVDLENNKLTANRKDYFF 156
Query: 454 AI-ESKRVKGAKSTD 467
+ ES + + K D
Sbjct: 157 ELEESWKQRLLKGLD 171
>gi|167462274|ref|ZP_02327363.1| hypothetical protein Plarl_06915 [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322382817|ref|ZP_08056660.1| phage-related terminase-like protein large subunit [Paenibacillus
larvae subsp. larvae B-3650]
gi|321153200|gb|EFX45647.1| phage-related terminase-like protein large subunit [Paenibacillus
larvae subsp. larvae B-3650]
Length = 423
Score = 42.0 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 42/302 (13%)
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
++P HN + +E S +LG L + ++++NP +
Sbjct: 105 DKPAKLKSIHNVS--IVWIEECSEVKYEGFKELLGRLRHPALDLHMLLSTNPVGEDNWTF 162
Query: 239 EIFNKP----------LDDWKRFQI----------DTRTVEGIDPSFHEGIIARYGLDSD 278
+ F K D +++ I + S+ + D D
Sbjct: 163 KHFFKDELKNHIVLEDTDLYEKRTIVKNDTFYHHSTAEDNLFLPKSYVAQLDELKAYDPD 222
Query: 279 VTRVEVCGQFPQQDIDSF-----IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
+ R+ G+F + + EA++R P G D E N V
Sbjct: 223 LYRIAREGRFGVNGVRVLPQFEVASHEEVIEAISRIRKPIE----RTGMDFGFEDSYNAV 278
Query: 334 VVLRRGPVIEHL-FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
V L + L W + T+++ + ++++ +I A++ +T Y G+
Sbjct: 279 VRLAVDHEQKILYIYWEYYKNQMTDDRTAEALQEFARTKELIKADSAEPKTIRYFRQKGF 338
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
++ + R + K+ + + I+ LK L ++ G
Sbjct: 339 NMRPAKKFPGS---------RLQYTKKIKRFKKIICSEKCPNTIRELKYL-TYKTDKNGR 388
Query: 453 LA 454
+
Sbjct: 389 IL 390
>gi|149190524|ref|ZP_01868794.1| terminase, ATPase subunit [Vibrio shilonii AK1]
gi|148835648|gb|EDL52615.1| terminase, ATPase subunit [Vibrio shilonii AK1]
Length = 584
Score = 42.0 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 37/243 (15%), Positives = 75/243 (30%), Gaps = 34/243 (13%)
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+D +G D F+ + R +V + +F SF L +
Sbjct: 327 ITVDDAIAKGGDKLFNMAKLKRKYPVKEVFDNLLRCKFLDDS-TSFFALKALLACKTDTE 385
Query: 311 ----------CPDPYAPLIMGCDI----AEEGGDNT--VVVLR---RGPVIEHLFDWS-- 349
P +++G D EG D+ VV L+ +G V +
Sbjct: 386 NWKDVDHNKARPVGNEEVLVGYDPRGGGTGEGSDDAGLVVALKPKTKGGVFRAIEKVRLK 445
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ I G+ EKY + +D G+ + + + + E
Sbjct: 446 GSSYEQQAETIRGITEKYNVVYLAMDTGGVGSAVAELVRKFYPALVELN-----YSPEM- 499
Query: 410 RNRRTELHVKMADWLEFASLI---NHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKST 466
+R + K + + + + L+ + ++ +G++ S R K
Sbjct: 500 --KRM-MAYKAREIINNGRFLFDDDWDDLVHSFLMIRQQTTDRSGQVTFVSNRSKIGSHA 556
Query: 467 DYS 469
D +
Sbjct: 557 DLA 559
>gi|262047916|ref|ZP_06020862.1| terminase large subunit [Lactobacillus crispatus MV-3A-US]
gi|260571794|gb|EEX28369.1| terminase large subunit [Lactobacillus crispatus MV-3A-US]
Length = 644
Score = 42.0 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 45/156 (28%), Gaps = 19/156 (12%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW----LVLWLMSTRPGI 108
WQ + +++ ++ ++ GRG GKT + VL
Sbjct: 112 DWQKFILAMING-WKDANGERRYTDIHISV--GRGQGKTQIAGIQMCKAVLIDTLNFTNK 168
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
+ AN+ Q T L+ V K L + F + + ++
Sbjct: 169 DFLITANTSDQ-STKLFGYVKKMLEAVIKIEPFASIAKESGLDLQTNQIIEKETNNKVWK 227
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
S Y +T+ + I DE
Sbjct: 228 ISYEADKYD-----------STHNVLAIYDETGALD 252
>gi|66395973|ref|YP_240307.1| ORF008 [Staphylococcus phage ROSA]
gi|62636393|gb|AAX91504.1| ORF008 [Staphylococcus phage ROSA]
Length = 421
Score = 42.0 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 38/309 (12%), Positives = 94/309 (30%), Gaps = 35/309 (11%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK++ + ++ + R ++ + + ++ L T+++ ++ + H F+
Sbjct: 33 KGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQKVTHLFK 91
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY---GMAIINDE 199
++ + + + R + P+ ++ +A I +
Sbjct: 92 VKVS------------PMEITYIPRGNRIIFRGA--QNPERLKSLKDSRFPFSIAWIEEL 137
Query: 200 ASGTPDVINLGILGFL----TERNANRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRF 251
A + I L + + + NP + + YE + + +
Sbjct: 138 AEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNTFVHH 197
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
I F + + + R E G+ +P N + +
Sbjct: 198 S-TYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGS---GVVPFNNLRIEEIPQGQ 253
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
D + + D D V ++ VI + + + + Y
Sbjct: 254 YDTFDNIRNAVDFG-YATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGY 312
Query: 368 RPDAIIIDA 376
+ D I D+
Sbjct: 313 QSDEIFADS 321
>gi|78043214|ref|YP_360500.1| prophage LambdaCh01, PBSX family terminase large subunit
[Carboxydothermus hydrogenoformans Z-2901]
gi|77995329|gb|ABB14228.1| prophage LambdaCh01, terminase, large subunit, PBSX family
[Carboxydothermus hydrogenoformans Z-2901]
Length = 420
Score = 42.0 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 54/339 (15%), Positives = 100/339 (29%), Gaps = 42/339 (12%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK++ + ++ M P + + L + LK +++ ++ + L +++
Sbjct: 32 KGGRGSGKSSFASIEIILGMMKDPNANAVVLRKVKETLKDSVFEQLIWAIEKLKVSDYWD 91
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII----ND 198
+ P + I + + S + + + I D
Sbjct: 92 -----IKHNPMEMTYIPTGQKILFRGADKPKKIRSTKV--------SKGYIKFIWYEEVD 138
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
E +G ++ I L T N P R++ E D K T
Sbjct: 139 EFNGMEEI--RIINQSLMRGGEQFVVFYTYNPPNRVNAWVNEEILIERPDRKVHHSTYLT 196
Query: 258 VEG--IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----IPLNIIEE--ALNRE 309
V + F ++ R E G+ + F I +E A +R
Sbjct: 197 VPREWLGEQFLIEAEHLKRINERAYRHEYLGEITGTGGEIFSNITIRKITDDEIKAFDRI 256
Query: 310 PCPDPYAPLIMGCDIAEEGG---DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
+ D D T RR I + R I +
Sbjct: 257 RRGIDWG---YAVDPVHYTVCHYDRT----RRRLFIFYEIHQVGLSNRRLAELIKEENKL 309
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
P I A++ ++ L+ G VY +V+
Sbjct: 310 NSP----ITADSAEPKSIAELKSYGLKVYGAKKGPGSVE 344
>gi|253682970|ref|ZP_04863757.1| hypothetical protein CLG_B2294 [Clostridium phage D-1873]
gi|253560896|gb|EES90358.1| hypothetical protein CLG_B2294 [Clostridium phage D-1873]
Length = 611
Score = 42.0 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 30/135 (22%)
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCP-------DPYAPLIMGCDIAEEGG---DNT 332
E + + +F L+ I + C I+ D+A +GG D +
Sbjct: 310 EYRSIWIKFSDKAFFKLDDINNCRVIKHCELEADFKNHKDDFYIISYDVARQGGTANDAS 369
Query: 333 VVVLRR------GPVIEHLFD-WSKTDLRTTNNK-------------ISGLVEKYRPDAI 372
+ + R G +++ +S D NN + LVEKY+ A+
Sbjct: 370 IATIFRCTPRTDGSYFKNVVAMYSCEDKNKNNNNVNSIMHFKNQCIMLKRLVEKYQAKAL 429
Query: 373 IIDANNTGARTCDYL 387
++D N G+ DYL
Sbjct: 430 LVDINGIGSGLLDYL 444
>gi|320532097|ref|ZP_08032978.1| hypothetical protein HMPREF9057_00846 [Actinomyces sp. oral taxon
171 str. F0337]
gi|320135702|gb|EFW27769.1| hypothetical protein HMPREF9057_00846 [Actinomyces sp. oral taxon
171 str. F0337]
Length = 370
Score = 42.0 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 53/175 (30%), Gaps = 12/175 (6%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119
V++ + + P I+ RG+GKT L S R V+ +
Sbjct: 21 RVIEEFLESLDDGPGAPGLLELITGARGVGKTV---MLTALGDSARERGWVVIDETAREG 77
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
L L AE ++ LS L K + SLSL + R ++
Sbjct: 78 LMDRLAAEFTRQLSQLAGKERSRLTSLSLSTPLGGGSATLEHAPTPEPSWRQKARALTQW 137
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---LTERNANRFWIMTSNPR 231
+ G + + DE P + L A +M P+
Sbjct: 138 LAEHGTG------LLLTIDEVHAIPREELRALSAEVQHLIREGAPIGLLMAGLPK 186
>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
Length = 1721
Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 18/129 (13%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G GKT ++L L S P ++ A + + L ++LSL P + +
Sbjct: 1332 GTGKTETILSIILSLQSHFPDSRILLTAPTHNAVDNVL----RRYLSLNPTHPPLRISTE 1387
Query: 147 SLHPAP-WYSDVLHCSLGIDSKHYSTMCRT-------------YSEERPDTFVGHHNTYG 192
+P L GI+ + T +S + N
Sbjct: 1388 IRKVSPDVTPYTLDAMAGIELNTLHSRAETTKAKKRVKAAKIVFSTCIGSSLGLLRNEMF 1447
Query: 193 MAIINDEAS 201
+I DEAS
Sbjct: 1448 DIVIIDEAS 1456
>gi|323487253|ref|ZP_08092556.1| hypothetical protein HMPREF9474_04307 [Clostridium symbiosum
WAL-14163]
gi|323399479|gb|EGA91874.1| hypothetical protein HMPREF9474_04307 [Clostridium symbiosum
WAL-14163]
Length = 550
Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLW--LMSTRPGIS 109
+WQ + ++ V+ +F+ I GR GKT + ++ + + G
Sbjct: 71 TWQKSTVSIM----FGIVDEAGIRIFREFLIVIGRKNGKTLFASGIIAYCLFLDGEYGAK 126
Query: 110 VICLANSETQ---LKTTLWAEVSK 130
V C+A Q + + W + K
Sbjct: 127 VFCVAPKLDQADLVYQSFWQTIQK 150
>gi|326772022|ref|ZP_08231307.1| conserved hypothetical protein [Actinomyces viscosus C505]
gi|326638155|gb|EGE39056.1| conserved hypothetical protein [Actinomyces viscosus C505]
Length = 370
Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 53/175 (30%), Gaps = 12/175 (6%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119
V++ + + P I+ RG+GKT L S R V+ +
Sbjct: 21 RVIEEFLESLDDGPGAPGLLELITGARGVGKTV---MLTALGDSARERGWVVVDETAREG 77
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
L L AE ++ LS L K + SLSL + R ++
Sbjct: 78 LMDRLAAEFTRQLSQLAGKERSRLTSLSLSTPLGGGSATLEHAPTPEPSWRQKARALTQW 137
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---LTERNANRFWIMTSNPR 231
+ G + + DE P + L A +M P+
Sbjct: 138 LAEHGTG------LLLTIDEVHAIPREELRALSAEVQHLIREGAPIGLLMAGLPK 186
>gi|118380585|ref|XP_001023456.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila]
gi|89305223|gb|EAS03211.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila SB210]
Length = 1858
Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
++ G+GKT + A ++L P + LA + + + E L+
Sbjct: 154 TLVALPTGLGKTFIAATVILNYYLWFPKGKIFFLAPTRPLVNQQM--ECLSQFELINKND 211
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
FEM +P P DV + + + +T + + + +I DE
Sbjct: 212 IFEMTGN--YPIPKRRDVY-----LRKRIFFCTPQTLENDLIE--QRYDGYNLSLVIFDE 262
Query: 200 A 200
A
Sbjct: 263 A 263
>gi|281491541|ref|YP_003353521.1| phage terminase [Lactococcus lactis subsp. lactis KF147]
gi|281375259|gb|ADA64772.1| Phage protein, terminase [Lactococcus lactis subsp. lactis KF147]
Length = 469
Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 57/350 (16%), Positives = 105/350 (30%), Gaps = 53/350 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ ++ V A + + + GKT + L LW + G+S++
Sbjct: 41 PWQKNLLKEVMAIDEDGLWTHQKFGYSIPRRN----GKTEIVYILELWSL--EQGLSILH 94
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + ++ + K+L + +S+ + L + T
Sbjct: 95 TAHRISTSHSSYEK-LKKYLEDSGYVEGEDFKSIKAK----GQERLELIESGGVIQFRT- 148
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
RT S + F ++ DEA + +T+ + N IM P
Sbjct: 149 -RTSSGGLGEGFD--------ILVIDEAQEYTTEQESALKYTVTDSD-NPMTIMCGTPPT 198
Query: 233 L------SGKFYE---IFNKPLDDWKRFQI-------DTRTVEGIDPS-----FHEGIIA 271
+ + W + + D +PS I A
Sbjct: 199 PISSGTVFTNYRDNTLAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEA 258
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D V+ G +P+ + S I +NR P L +G + G D
Sbjct: 259 ELGEDKLDHNVQRLGYWPKYNQKSVISEQEWNVLKVNRLPVIK--GKLFVGI---KYGND 313
Query: 331 NTVVVLRRGPVIEH----LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + + +R N I ++K + ++ID
Sbjct: 314 GANVAMSIAVKTLSGKVFVETIDCQSIRNGNQWIINFLKKADVEKVVIDG 363
>gi|29826542|ref|NP_821176.1| hypothetical protein SAV_2 [Streptomyces avermitilis MA-4680]
gi|29603638|dbj|BAC67711.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 77
Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
P+ +G I + G GKT++ A ++ P ++ + L
Sbjct: 2 PPQGARGTIVSATGSGKTSMAAAST---LNCFPEGRILVTVPTLDLL 45
>gi|66396048|ref|YP_240381.1| ORF008 [Staphylococcus phage 71]
gi|62636467|gb|AAX91578.1| ORF008 [Staphylococcus phage 71]
Length = 421
Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 38/309 (12%), Positives = 94/309 (30%), Gaps = 35/309 (11%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK++ + ++ + R ++ + + ++ L T+++ ++ + H F+
Sbjct: 33 KGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQKVSHLFK 91
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY---GMAIINDE 199
++ + + + R + P+ ++ +A I +
Sbjct: 92 VKVS------------PMEITYIPRGNRIIFRGA--QNPERLKSLKDSRFPFSVAWIEEL 137
Query: 200 ASGTPDVINLGILGFL----TERNANRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRF 251
A + I L + + + NP + + YE + + +
Sbjct: 138 AEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNTFVHH 197
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
I F + + + R E G+ +P N + +
Sbjct: 198 S-TYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGS---GVVPFNNLRIEEIPQGQ 253
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
D + + D D V ++ VI + + + + Y
Sbjct: 254 YDTFDNIRNAVDFG-YATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGY 312
Query: 368 RPDAIIIDA 376
+ D I D+
Sbjct: 313 QSDEIFADS 321
>gi|326385269|ref|ZP_08206932.1| putative phage terminase protein [Gordonia neofelifaecis NRRL
B-59395]
gi|326196012|gb|EGD53223.1| putative phage terminase protein [Gordonia neofelifaecis NRRL
B-59395]
Length = 439
Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 58/384 (15%), Positives = 115/384 (29%), Gaps = 49/384 (12%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVI 111
WQ+ +++ + V + GKT L A ++L + G V
Sbjct: 11 PWQILAADLIGECDASGRLIHPLVVVTVPRQS----GKTALLAAVMLHRLIMLGEGGRVW 66
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A + + + +W E+ + + D LG ++
Sbjct: 67 YTAQTGIKAREQMW-EMMDAIDRSALGPL-------IKSKRGAGDTSMELLGTGARA--- 115
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT---ERNANRFWIMTS 228
PD+ G+ + + DEA + G++G +T N I+ S
Sbjct: 116 ---KMHPPTPDSLHGNQSDLN---VIDEAWFFDEPQAHGLMGAITPTQSTRPNAQTIIIS 169
Query: 229 NPRRLSGKF-YEIFNKPLDDWKRFQIDTRTVEGIDPS----------------FHEGIIA 271
+ +++ + D +D +G+ P + A
Sbjct: 170 TAGTAESVWFHDLVARGHDGALCL-VDYGVADGVTPDDYPAIAAAHPAIGHTQKAAILPA 228
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
S + G + +P I++ A P P A ++ GC ++ E D
Sbjct: 229 AREQLSSGEFLRAYGNVRTRTESRLLPAEIVDAATTTTPLPATGA-VVFGCALSFERDDA 287
Query: 332 TVV---VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+V G + L T + + L +++ + I D +
Sbjct: 288 AIVACMAADDGTPVVELVARF-TSAEGVAARCAELTDRHGGH-VAIAPAGPAGSIADDAD 345
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNR 412
LG V R + + +R
Sbjct: 346 RLGATVTRYADAELSSSTADFLDR 369
>gi|224586458|ref|YP_002640348.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
gi|224497449|gb|ACN53076.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
Length = 359
Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 57 YGGDKASDFERFIGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDHPEH 114
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDID 294
F + + +K + T + F E Y + + V G +
Sbjct: 115 YFKTDYIDNVATFKTYNFTTYDNVLLSKVFIETQEKLY-KEIPTYKARVLLGAWIASTDS 173
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NII++ + P I D A GGDNT + +
Sbjct: 174 IFTQINIIQDYVFTSP--------IAYLDPAFSIGGDNTALCV 208
>gi|297618941|ref|YP_003707046.1| hypothetical protein Mvol_0413 [Methanococcus voltae A3]
gi|297377918|gb|ADI36073.1| hypothetical protein Mvol_0413 [Methanococcus voltae A3]
Length = 576
Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 43/265 (16%), Positives = 80/265 (30%), Gaps = 53/265 (20%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL-----VLWLMSTRPGIS 109
Q E ++ + + L+ + G+G GK + + L + +++ P
Sbjct: 93 QAEILKKMKKNYLS------------TVLVGKGGGKDFMTSLLFNDELIDLILTDIPYTR 140
Query: 110 V--ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
V I +A + + E +W S K W ++ P + + +
Sbjct: 141 VDFINIAPNADLAHNVFFREFKQWFSR--CKLWKLFKNSEKSPIKINNTFIKIGDLVKI- 197
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL--------TERN 219
T R +F G T I+ DE D + T
Sbjct: 198 -------TSGHSRSASFEG---TNPKCIVIDE---ISDENFMNAEKIFYQAKSSVQTRWG 244
Query: 220 ANRFWIMTS-------NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
+ I+ S NP G Y+I+++ L F T E
Sbjct: 245 KDGKVILISWTRFPTPNPLDDIG--YKIYSENLGIDDVFSFKGATWEVNSHRSKFDFEDD 302
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFI 297
Y + + + + P+ + FI
Sbjct: 303 YKRNGVLAKKMYECKPPELS-NYFI 326
>gi|34365522|tpg|DAA01288.1| TPA_exp: replicase/helicase/endonuclease [Danio rerio]
Length = 3007
Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 10/123 (8%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M +L E E+ + DL K++ + + L + QL
Sbjct: 2248 MKDKLQQVEEHEEHIPDLASEANQKVAHLEKKNNIM---CRRDGLALIRSLNDTQLSIFY 2304
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTL------NAWLVLWLMSTRPG-ISVICL 113
+ CL+ V NP I+ G G GK+ L A +L + P ISV+
Sbjct: 2305 EIRQWCLDKVMGKNPSPVHLFITGGAGTGKSHLIKAIQYEAMRILSTVCRHPDNISVLLT 2364
Query: 114 ANS 116
A +
Sbjct: 2365 APT 2367
>gi|85709622|ref|ZP_01040687.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
gi|85688332|gb|EAQ28336.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
Length = 441
Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 72/413 (17%), Positives = 126/413 (30%), Gaps = 56/413 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I AGRG GKT A V + + + +++S + + + S L+ P
Sbjct: 55 IMAGRGFGKTRAGAEWVRSIAESHSEARIALVSSSLAEARAVMVEGESGLLACSP----- 109
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE-- 199
P SL YS P+ G ++ DE
Sbjct: 110 ----------PDRRPEFEPSLRRVRFPNGAEAHLYSAGEPEALRGPQFSHA---WCDEVG 156
Query: 200 ----ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
+ +L L + R + T+ PR + + + + T
Sbjct: 157 KWPISHSRATRAWDNLLMGLRLGDDPRIAV-TTTPRAVPLVQRLLKQETSQATAVTRGST 215
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
P+ IA S + R E+ G+ + + +++E++ E P +
Sbjct: 216 YDNSANLPARFLEAIADEFAGSQLGRQEIEGELIEDIEGALWSRSLLEQSKE-EAGPPGF 274
Query: 316 APLIMGCD-IAEEGGDNT---VVVLRRGPVIEHLFD--WSKTDLRTTNNKISGLVEKYRP 369
+++G D GD V L L D ++ ++ +R
Sbjct: 275 RRIVIGVDPPTSSTGDECGIVVAALGEDNKAWVLADCSVARAQPEQWARAVAEAAHHWRS 334
Query: 370 DAIIIDANNTGARTCDYLE--MLGYHVYRVLGQKRAVDLEFCRNRRTE--LHVKMADWLE 425
D II +AN G L G V V + V R E + +D +
Sbjct: 335 DRIIAEANQGGEMVESVLRAADAGLPVKLVHASRGKV-------ARAEPVAALYASDRVR 387
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
A N L + + I + +S D D L++ +E
Sbjct: 388 HAG--NFPQLQDQMCG-----------MLIGGEYAGPGRSPDRLDALVWALSE 427
>gi|300173892|ref|YP_003773058.1| phage terminase large subunit [Leuconostoc gasicomitatum LMG 18811]
gi|299888271|emb|CBL92239.1| phage terminase, large subunit, pbsx family [Leuconostoc
gasicomitatum LMG 18811]
Length = 427
Score = 41.6 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 58/331 (17%), Positives = 104/331 (31%), Gaps = 26/331 (7%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL---ANSETQLKTTLWAEVSK 130
N + A RG GK+ A V+ + T+P ++ + L AN+ Q + + + K
Sbjct: 21 NSKARYIAYKGSRGSGKSEGVATKVILDIVTKPYVNWLVLRRYANTNRQ---STFTLLQK 77
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
+ + F+ SL + K S +
Sbjct: 78 VANRMGVGSLFQFNG-SLPEITFKPTGQKILFRGADKPLSITSISVETGNLCRLW-VEEA 135
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK- 249
Y M + E S + ++ + G + + + ++T NP + F
Sbjct: 136 YQMEL---EESF--ETVDESMRGVIDDPDGFYQTVLTFNPWNERHWLKKRFFDEDTRVNN 190
Query: 250 --RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
+ +D + ++ + RV V G++ + I N I E +
Sbjct: 191 SLAITTTYKDNPFLDVDYVNRLLEMKKRNPRRARVAVDGEW--GVAEGLIYENTIVEKFD 248
Query: 308 -REPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISG 362
RE + ++ G D G D T + + I L + K + T
Sbjct: 249 IREVLKGSH--IVRGMDWG-YGPDPTTFIEYAINTKTKDIYILKEMYKQHMLTDEIFKWL 305
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYH 393
V Y+ I D N G R L G
Sbjct: 306 YVHGYQQGDIRADYANGGDRMIQELRNKGIR 336
>gi|238581544|ref|XP_002389644.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
gi|215452133|gb|EEB90574.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
Length = 633
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 25/159 (15%), Positives = 52/159 (32%), Gaps = 18/159 (11%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANS-----------ETQLKTTLWAEVSKWLSLL 135
G GKT +L L+S P ++ A S + ++ L+ +
Sbjct: 480 GTGKTVTAVEAILQLLSANPNARILACAPSNSAADLIAMRLRSLGESGLFRAYAPSRDRE 539
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
H + + +S L + K + + T +G + I
Sbjct: 540 QVPHEL-LPFTYQNATGHFSVPLLSRM----KRFRAVVTTCVSANIIAGIGIPRGHYTHI 594
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
DEA + ++ T + N +++ +P++L
Sbjct: 595 FVDEAGQATEP--EVMIAIKTMADMNTNVVLSGDPKQLG 631
>gi|156933807|ref|YP_001437723.1| hypothetical protein ESA_01633 [Cronobacter sakazakii ATCC BAA-894]
gi|156532061|gb|ABU76887.1| hypothetical protein ESA_01633 [Cronobacter sakazakii ATCC BAA-894]
Length = 575
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 56/367 (15%), Positives = 95/367 (25%), Gaps = 56/367 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP---GIS 109
WQ V S + + R GK+ L A V M G
Sbjct: 84 DWQKFCFCVSFGWVRKSDGLRRFQEIYIEVP--RKNGKS-LIAASVGIYMFCADDEHGAE 140
Query: 110 VICLANSETQLKTTLWAE---VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
V C A +E Q E V K +L P + G
Sbjct: 141 VYCGATTEKQAFKVFEPERQMVQKLPALRKRFSIKPWAKKMTRPDGSVFAPIVGDPGDGD 200
Query: 167 KHYSTMCRTYSEERPDTF-------VGHHNTYGMAII----NDEASGTPDV---INLGIL 212
+ Y E D G II D AS D + +
Sbjct: 201 SPSCAIIDEYHEHATDALYTTMTTGQGAREQPLTLIITTAGYDIASPCYDKRSQVVEILE 260
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI----DPSFHEG 268
G T+ + + + DDW + + + P F
Sbjct: 261 GIRTDGANETIFGIIYTLDKD------------DDWTSEEAIRKANPNLGVSLKPEFLRA 308
Query: 269 IIARYGLDSDVTRVEVCGQ----FPQQDIDSFIPLNIIEEA-LNREPCPDPYAPLIMGCD 323
+ ++ + + + E A + P +G D
Sbjct: 309 K-QELAKTTPSQTNKILTKHFNLWVSSKAAFYNMQRWQEAADPSLTLADFEGEPCYLGID 367
Query: 324 IAEEGGDNTV--VVLRRGPVIEHLFD-----WSKTDLRTTNN-KISGLVEKYR---PDAI 372
+A + N V V +R ++H + W D + + ++ E+Y+ +
Sbjct: 368 LASKLDLNAVVPVFMREIDGLKHFYCIGAQFWVPEDTVYSTDPQLKRTAERYQSFVNQGV 427
Query: 373 IIDANNT 379
+I +
Sbjct: 428 LIPTDGA 434
>gi|195942183|ref|ZP_03087565.1| hypothetical protein Bbur8_04905 [Borrelia burgdorferi 80a]
gi|219786709|ref|YP_002477434.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692709|gb|ACL33925.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|312148688|gb|ADQ31340.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
gi|312148897|gb|ADQ31544.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
gi|312201269|gb|ADQ44578.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 396
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 75/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIHKEILELLSIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKAKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYAHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFSADDIEMLIPTMREQGGRIY--MSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ + + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219
>gi|324504396|gb|ADY41899.1| ATP-dependent RNA helicase DDX20 [Ascaris suum]
Length = 937
Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 29/209 (13%), Positives = 61/209 (29%), Gaps = 19/209 (9%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLM-STRPGISVICLANSETQLKTTLWAEVSKWL 132
F + A G GKT + A + L + + R V+ +A + E++ +
Sbjct: 53 GLMGFDMLVQAKSGTGKTLVFALMALEGLNAQRRQPQVMIIAPT---------REIAMQI 103
Query: 133 SLLPNK---HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
++ + + D+ G+ T R D +H
Sbjct: 104 AVTVRRLAPPVIHVGVFVGGGRSVADDIKEIRKGVHIA-VGTTGRLCQLVNDDLLPTNH- 161
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
+ DEA + + FL N + + G E + +
Sbjct: 162 --VHLFVLDEADKLMEENFQKDINFLFSSLPNNKQMAVFSATYP-GDLDETLARYMKKAH 218
Query: 250 RFQIDTRTVEGID-PSFHEGIIARYGLDS 277
+++ V+ + + + G S
Sbjct: 219 LIRLNAEDVQLLGIKQYVAMSYSEDGPTS 247
>gi|225621767|ref|YP_002724125.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
gi|225547658|gb|ACN93635.1| phage terminase, large subunit, pbsx family [Borrelia sp. SV1]
Length = 450
Score = 41.6 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDNPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDID 294
F + +K + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNTATFKTYNFTTYDNVLLGKGFIEPQEKLY-KDIPTYKARVLLGEWIASIDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITQDYVFSSP--------IAYLDPAFSVGGDNTALCV 299
>gi|283786098|ref|YP_003365963.1| ATP-dependent acetyltransferase [Citrobacter rodentium ICC168]
gi|282949552|emb|CBG89168.1| putative ATP-dependent acetyltransferase [Citrobacter rodentium
ICC168]
Length = 669
Score = 41.6 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 38/112 (33%), Gaps = 17/112 (15%)
Query: 18 LMWSD-EIKLSFSNFVLHFFP----------WGEKGT-PLEGFSAPRSWQLEFMEVVDAH 65
L WSD + NFV HF W + + + F +WQ E +
Sbjct: 121 LRWSDCPQPIPTPNFVRHFCRVLLADGQTLCWRQPQSLSVTHFPGRPAWQSATGEPLPEQ 180
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
A++A RG GK+ L L+ +S I A ++
Sbjct: 181 SAILAQLRQMPERIAAVTAARGRGKSALAGQLIA-HLSG----QAIVTAPTK 227
>gi|310005737|gb|ADP00124.1| DNA maturase beta subunit [Cyanophage NATL1A-7]
Length = 577
Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 11/124 (8%)
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL---RRGPVIEH-LFDWSKTD 352
+P + + + Y I D + G D T + G + H + +
Sbjct: 324 LPGDYFYSPMQLQGEWSKYTETICSVDPSGRGSDETAAAYLSQKNGFIYLHEMRAYRDGY 383
Query: 353 LRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCR-N 411
T I +KY ++I+ N G L K+A+D+E R N
Sbjct: 384 TDNTLLNILRGCQKYGVTKLVIETN-FGDGIVAELFKKHLQ-----NTKQAIDIEEVRAN 437
Query: 412 RRTE 415
R E
Sbjct: 438 VRKE 441
>gi|260433350|ref|ZP_05787321.1| phage DNA Packaging Protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417178|gb|EEX10437.1| phage DNA Packaging Protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 427
Score = 41.2 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 55/423 (13%), Positives = 109/423 (25%), Gaps = 69/423 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ S G V + + Q++ +
Sbjct: 35 IMGGRGAGKTRAGA---EWVRSMVEGAKPFDEGEARRVALVGETFDQVRDVM-------- 83
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
F + P S + +S P+ G
Sbjct: 84 -------IFGDSGIMQCSPPDRRPQWKASERKLVWPNGAEAQAFSAHDPEGLRGPQFD-- 134
Query: 193 MAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + L +T+ P R ++ P
Sbjct: 135 -AAWVDELAKWKKAGETWDMLQFAL-RLGERPRVCVTTTP-RNVKVLKDLLAAPSTVM-T 190
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ SF + + ARY + + R E+ G + ++++ A R
Sbjct: 191 HAPTEANRANLAESFLQEVRARY-AGTRLGRQELDGVLLADAEGALWTGSMLDGA--RVG 247
Query: 311 CPDPYAPLIMGCDIA---EEGGDNTVVVLRRGPVIEHLFDWS----------KTDLRTTN 357
+++ D A G D +V+ + DW
Sbjct: 248 AVPELDRVVVALDPAVTGGSGADACGIVVVGAQLQGPPEDWRAYVLADRTVQGVGPAGWA 307
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
++++ + ++ + N G + + + + + + L+
Sbjct: 308 RAAIDAMDEFGAERLVAEVNQ-GGQLVEEVVRQVDPLVPFRAVRASRGKVARAEPVAALY 366
Query: 418 VKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
+ A L + + + G S D D L++
Sbjct: 367 EQGRV-FHVAGLDALEEQMCQMTARGFE----------------GQGSPDRVDALVWALH 409
Query: 478 ENP 480
E
Sbjct: 410 ELV 412
>gi|255945291|ref|XP_002563413.1| Pc20g09170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588148|emb|CAP86246.1| Pc20g09170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 944
Score = 41.2 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 22/190 (11%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW-AEVSKWLS---LLPNKHWFE 142
G+GKT + A ++ +P +++ + + W +E+ ++ + H +
Sbjct: 365 GMGKT-IQAVSLIMSDFPQPDPTLVIVPP----VALMQWVSEIKEYTDGKLKVLVYHNSD 419
Query: 143 MQSLSLHPAPWYSDVLHCS-----LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ L PA + I K R + + D+ H + ++
Sbjct: 420 AKVKRLTPAEIRKYDVIMISYASLESIYRKQEKGFSRGETMVKADSV--IHAVHYHRLVL 477
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS-GKFYEIFN----KPLDDWKRFQ 252
DEA AN W ++ P + G+F+ + KP + Q
Sbjct: 478 DEAHSIKSRTTGVARACFALE-ANYKWCLSGTPVQNRIGEFFSLLRFLQVKPFACYFCKQ 536
Query: 253 IDTRTVEGID 262
D ++
Sbjct: 537 CDCEQLQWTS 546
>gi|319406198|emb|CBI79835.1| phage-related protein [Bartonella sp. AR 15-3]
Length = 442
Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 9/193 (4%)
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNAN--RFWIMTSNPRRLSGKFYEIFN-KPLDD 247
+ DEA D ++ L E +T NP R + + F +
Sbjct: 122 RILLCWVDEAEPVTDAAWQVLIPTLREEGKEWHSELWVTWNPCRENAAVEKRFRFTKDPN 181
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIEE 304
K +I+ R + A + + G++ ++ + L +E
Sbjct: 182 IKGVEINWRDNPKFPAKLNRDRTADLEQRPEQYQHIWEGEYLLAMQGAYYQKLLLEAEQE 241
Query: 305 ALNREPCPDPYAPLIMGCDIAEEG--GDNTVVVLRR-GPVIEHLFDWSKTDLRTTNNKIS 361
DP + + DI G D T + + + + D+ + + + I
Sbjct: 242 GRITTVPRDPLIQVKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIG 301
Query: 362 GLVEKYRPDAIII 374
+ K A+++
Sbjct: 302 WICHKGYEKALMV 314
>gi|182438394|ref|YP_001826113.1| hypothetical protein SGR_4601 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466910|dbj|BAG21430.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 609
Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 42/125 (33%), Gaps = 24/125 (19%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
+P +PE E + +F PWG G R+WQ ME
Sbjct: 7 VPESPEPETVTTTTASH-HLSPAFPGRA----PWGTAG-------KLRAWQQGAME---- 50
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
V + A G GKTT L WL+ + +A +E LK
Sbjct: 51 ---RYVQEQPRDFLAVATP---GAGKTTFALTLASWLLHHHVVQQITVVAPTEH-LKKQ- 102
Query: 125 WAEVS 129
WAE +
Sbjct: 103 WAEAA 107
>gi|73748202|ref|YP_307441.1| hypothetical protein cbdb_A296 [Dehalococcoides sp. CBDB1]
gi|73659918|emb|CAI82525.1| hypothetical protein cbdbA296 [Dehalococcoides sp. CBDB1]
Length = 405
Score = 41.2 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 49/295 (16%), Positives = 86/295 (29%), Gaps = 59/295 (20%)
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG 213
++D+ H G + S E + VG NT + + DEA
Sbjct: 72 FTDIYHTEGGYIIRLNQARAVFLSAEPSASVVG--NTAHLLLEVDEAQDVNKEKY----- 124
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFN-------------KPLDDWKRFQIDTRTVEG 260
+ T+ L G ++ F+ + + F+ D V
Sbjct: 125 ---SKEFKPMGATTNVTTVLYGTTWDSFSLLEEIKEQNIEKEQKDGLKRHFRYDWEAVAA 181
Query: 261 IDPSFHE---GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC---PDP 314
+P++ R G + + + P ++ PC P+
Sbjct: 182 HNPTYLAYALSEKERLGKNHPLFLAQYR-LLPVSGGGGMFSNEQLDLLKGNHPCQVYPEK 240
Query: 315 YAPLIMGCDIAEE-----GGDNTVVVLRRGPVIEHL----------------------FD 347
+ G D+A E G T V LRR + + +
Sbjct: 241 GKVYVAGLDLAGEDSQTGGISPTTVNLRRDSSVLTIAQLDYTFAKAPYNLPQVRLVCHYS 300
Query: 348 WSKTDLRTTNNKISGLVEK-YRPDAIIIDANNTGARTCDYLEM-LGYHVYRVLGQ 400
W T K+ L+ K ++ + +DA G +L LG + V Q
Sbjct: 301 WQGTRHALLYEKLVELLGKVWKCRKVAVDATGLGQPVASFLRESLGSRILPVPFQ 355
>gi|149913871|ref|ZP_01902403.1| hypothetical protein RAZWK3B_17748 [Roseobacter sp. AzwK-3b]
gi|149812155|gb|EDM71986.1| hypothetical protein RAZWK3B_17748 [Roseobacter sp. AzwK-3b]
Length = 419
Score = 41.2 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 68/428 (15%), Positives = 125/428 (29%), Gaps = 83/428 (19%)
Query: 82 ISAGRGIGKTTLNA-WLVLWLMSTRPGISVIC-----LANSETQLKTT-LWAEVSKWLSL 134
I GRG GKT A W+ + RP +C + + Q++ ++ E S ++
Sbjct: 27 ILGGRGAGKTRAGAEWVRAQVEGARPLSEGLCRRMALVGETIDQVREVMIFGE-SGIMAC 85
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
P + Q+ + + +S P+ G
Sbjct: 86 SPPDRRPDWQATR---------------KRLVWPNGAVAQAFSAHEPEALRGPQFDGA-- 128
Query: 195 IINDEA---SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
DE D ++ G + + + R G ++ L+
Sbjct: 129 -WVDEMAKWKKARDTWDMLQFGLRLGDHPQ---VCITTTPRNVGVLKDL----LEQKSTV 180
Query: 252 QIDTRTVEG---IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
T + SF E + ARY + + R E+ G + + + IE R
Sbjct: 181 VTSAPTEANRAFLAQSFLEEVRARY-AGTRLGRQELDGVLLSEAEGALWTNSGIEAC--R 237
Query: 309 EPCPDPYAPLIMGCDI---AEEGGDNTVVVL--------RRGPVIEHLFDWSKTDLRTT- 356
+++ D G D +V+ + L D S R
Sbjct: 238 VDNLPELDRIVVAIDPPVTGRAGSDECGIVVAGAVTRGPVQDWRAYVLADCSVGAARPLS 297
Query: 357 -NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNRR 413
N +E + D ++ + N G + + V V ++ V R
Sbjct: 298 WANAAISAMEHWGADRLVAEVNQGGDMVAQVIRQVDPLVPVKSVHARRGKVT-------R 350
Query: 414 TELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD 470
E +A E + + G L + ++ + G S D D
Sbjct: 351 AE---PVAALYEQGRVHHLRGLGTLEDQMCAMTARGFEGKG-------------SPDRVD 394
Query: 471 GLMYTFAE 478
L++ E
Sbjct: 395 ALVWALTE 402
>gi|160898677|ref|YP_001564259.1| hypothetical protein Daci_3236 [Delftia acidovorans SPH-1]
gi|160364261|gb|ABX35874.1| protein of unknown function DUF264 [Delftia acidovorans SPH-1]
Length = 428
Score = 41.2 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 49/320 (15%), Positives = 92/320 (28%), Gaps = 38/320 (11%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P F+ + AG G GKT + + P I+ A S Q++ + +
Sbjct: 19 PHKFRAFV-AGFGSGKTWVGCSGLSAHAWEFPRINAGYFAPSYPQIRDIFFPTI------ 71
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H + +++ + + Y T S +RP++ VG +
Sbjct: 72 EEVAHDWGLRTEI-------RESNKEVHLYSGRQYRTTVICRSMDRPESIVGFKIGQAL- 123
Query: 195 IINDE----ASGTPDVINLGILGFL--TERNANRFWIMTSNPRRLSGKFYEIFNKPLDD- 247
DE A + I+ + +T+ P ++ F K + D
Sbjct: 124 --VDELDVMAKQKAEQAWRKIIARMRYNVDGLKNGVDVTTTPEG-FKFTHQQFVKAVQDK 180
Query: 248 ------WKRFQIDT-RTVEGIDPSFHEGIIARYGLD-SDVTRVEVCGQFPQQDIDSFIPL 299
+ Q T + + + + Y D + G F S P
Sbjct: 181 PELAKLYGLIQASTFENAKNLPADYIPSLFDSYPKQLIDAY---LRGLFVNLTSGSVYP- 236
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
+ + + P+++G D VLR G + D
Sbjct: 237 DFDRKLNHSFESLQEGEPVMLGMDFNRLHMAAVAYVLRDGWPVAVDEITDGRDTPYMARL 296
Query: 360 ISGLV-EKYRPDAIIIDANN 378
+K + DA+
Sbjct: 297 FRERYQDKGHAVTVYPDASG 316
>gi|329928970|ref|ZP_08282780.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF5]
gi|328937222|gb|EGG33649.1| Tex-like protein N-terminal domain protein [Paenibacillus sp. HGF5]
Length = 731
Score = 41.2 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI 342
EV G+ ++ + I + + P ++G D A G VV G ++
Sbjct: 293 EVRGELTEKGENQAISIF-AGNLRSLLLQPPVKGRCVLGVDPAYRTGCKLAVVDDTGKLL 351
Query: 343 EHLFDWSK---TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
E + R K L+ KY I+I G T
Sbjct: 352 EVAVTYPTPPANKKREAAAKFKELIAKYGIKLIVI-----GNGTASR 393
>gi|219872329|ref|YP_002476730.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
gi|219694371|gb|ACL34896.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
Length = 396
Score = 41.2 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 32/217 (14%), Positives = 74/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L G + + + + ++ E+ + L++ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFNPDGGDTLAIRKKKNKTTQSIHKEICELLNIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKSKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYAHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFTSEDIEMLIPTMREQGGRVY--MSSNPVPKSHWLYKRYLSNEDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ + + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGNVQAWLEKQKLAYHGNDIGFRIEVLGE 219
>gi|330015975|ref|ZP_08308363.1| putative ATPase subunit of terminase [Klebsiella sp. MS 92-3]
gi|328529845|gb|EGF56736.1| putative ATPase subunit of terminase [Klebsiella sp. MS 92-3]
Length = 575
Score = 41.2 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 37/269 (13%), Positives = 75/269 (27%), Gaps = 36/269 (13%)
Query: 237 FYEIFNK---PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + + P W++ + + + + R D +F +
Sbjct: 304 WKKTHSGVLYPDKTWRQI-VTIQDAINNGWDYTDIDEIRDENSPDEFENLYMCEFVKDGE 362
Query: 294 DSFIPLNIIEEALNREPCPDPYAP----------LIMGCDI--AEEGGDN-----TVVVL 336
+F ++ + + P + +G D GD TV L
Sbjct: 363 SAFNLSQLLGCGADGYDDWPDWKPFASRPMGQREVWLGYDANGGSGNGDAGALSVTVPPL 422
Query: 337 RRGPVIE--HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G L + I E+Y I ID G + +
Sbjct: 423 VAGGRFRTVELKQLRGLEFEQQAAVIKEAAERYNVTHIAIDGQGVGEAV--------WQI 474
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTG 451
+ ++R L +KM + GL++ +++ +V G
Sbjct: 475 VKNWFPAAICYQMSLSSKRA-LVLKMLQVIRAGRWEYDRSEQGLVRAFNAVRK-VVTPGG 532
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ E+ R +G D + M + P
Sbjct: 533 FITYETDRSRGVSHGDMAWATMLSIINEP 561
>gi|224796986|ref|YP_002642738.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|224553700|gb|ACN55104.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|312149848|gb|ADQ29915.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 396
Score = 41.2 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 75/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIHKEILELLSIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKAKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYAHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFSADDIEMLVPTMREQGGRIY--MSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ + + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219
>gi|226234361|ref|YP_002775493.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
gi|226201889|gb|ACO38473.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
Length = 396
Score = 41.2 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 75/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIHKEILELLSIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKAKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYAHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFSADDIEMLVPTMREQGGRIY--MSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ + + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219
>gi|11496682|ref|NP_045481.1| hypothetical protein BBG21 [Borrelia burgdorferi B31]
gi|218868779|ref|YP_002455248.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
gi|224796961|ref|YP_002642637.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|224985496|ref|YP_002642672.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|225548803|ref|YP_002724009.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|2690026|gb|AAC66069.1| predicted coding region BBG21 [Borrelia burgdorferi B31]
gi|218165273|gb|ACK75330.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
gi|223929545|gb|ACN24257.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|224554186|gb|ACN55578.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|225546810|gb|ACN92808.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 396
Score = 41.2 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 33/217 (15%), Positives = 75/217 (34%), Gaps = 36/217 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIHKEILELLSIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA-------II 196
+ + ++R F G H+T + +
Sbjct: 86 SKAKIESKSL---------------------IFGKKRAFVFEGGHDTRDLKSYAHFKDLW 124
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQID 254
+EA+ ++ + E+ + M+SNP S Y+ + N+ +
Sbjct: 125 LEEANQFSADDIEMLVPTMREQGGRIY--MSSNPVPKSHWLYKRYLSNQDNPAVCIIKST 182
Query: 255 TRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQ 287
R ++ + + + Y + R+EV G+
Sbjct: 183 YRDNPFLNGGDVQAWLEKQRLAYHGNDIGFRIEVLGE 219
>gi|257088841|ref|ZP_05583202.1| predicted protein [Enterococcus faecalis CH188]
gi|256997653|gb|EEU84173.1| predicted protein [Enterococcus faecalis CH188]
gi|315160590|gb|EFU04607.1| phage uncharacterized protein [Enterococcus faecalis TX0645]
gi|315579436|gb|EFU91627.1| phage uncharacterized protein [Enterococcus faecalis TX0630]
Length = 418
Score = 41.2 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 46/323 (14%), Positives = 95/323 (29%), Gaps = 35/323 (10%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG KTT A + LM P ++I L ++T + E+ ++ + + +F+
Sbjct: 52 RGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDT---DVV--EIILQVAKVLSSKYFKTLV 106
Query: 146 LSLH--PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+L+ + + + G H +I D+
Sbjct: 107 FALYNVELVLLKETTTEIDTNLKTSSRGTSQLLGMGIYASLTGKHAD---IVITDDIVNI 163
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI---FNKPLDDWKRF---QIDTRT 257
D ++ + N + +G+F ++K K + D
Sbjct: 164 KDRVSRA-----EREKTKLQYQELQNVKNRAGRFINTGTPWHKEDAISKMPNVKKFDCYE 218
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
ID + + + + + + F + N +
Sbjct: 219 TGLIDKEQRKAL--QQSMTPSLFAANYELKHIADSESLFTAPTYTD-NTNLIYNGVAH-- 273
Query: 318 LIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
D A G D+T + + G +I W K + +I L + Y+
Sbjct: 274 ----IDAAYGGDDSTAFTIFKEQKDGTIIGFGKKWQKH-VDDCIPEILQLHQHYQAGTFY 328
Query: 374 IDANNTGARTCDYLEMLGYHVYR 396
+ N +L G +V +
Sbjct: 329 NETNGDKGYLAKHLIERGQYVQK 351
>gi|158300801|ref|XP_320633.4| AGAP011893-PA [Anopheles gambiae str. PEST]
gi|157013336|gb|EAA00145.5| AGAP011893-PA [Anopheles gambiae str. PEST]
Length = 607
Score = 41.2 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 46/286 (16%), Positives = 86/286 (30%), Gaps = 34/286 (11%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
R L + + L ++ + +S +F FP E P W +
Sbjct: 151 RSLKIEFPLNRLQYKLEYTALVHMSRLDFSSILFPKIESAKPTTPAKTFD-WFQSCI--- 206
Query: 63 DAHCLNSVNNPNPEVFKGAISAGR------GIGKTT--LNAWLVLWLMSTRPGISVICLA 114
A V + A A G GKT + A L +W M RP ++ A
Sbjct: 207 -AENEQQTQAIKNIVNRTAYPAPYILFGPPGTGKTCTIVEAVLQIWKM--RPKSRILVTA 263
Query: 115 NS--------ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
S + LK ++ ++ S + M + + + + D
Sbjct: 264 TSNYACNELAKRLLKYVTVNDLFRYFSQTSQRDINGMDLKVVQVSNMHYGIYETPAMQDF 323
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW-- 224
+ T +G + I DE ++ L +G + N
Sbjct: 324 VQTRILVCTVMTSGRLLQLGVDRSMYDYIFIDECGSCRELSALVPIGCVGTDTTNNRLQA 383
Query: 225 --IMTSNPRRLSGKFYEIFNKPLDD-----W--KRFQIDTRTVEGI 261
++ +P +L +FY+ + D W + R + +
Sbjct: 384 SVVLAGDPLQLGPQFYDAELRAKGDPTITHWAVNWHHLPNRKLPML 429
>gi|86138748|ref|ZP_01057320.1| terminase, large subunit, putative [Roseobacter sp. MED193]
gi|85824395|gb|EAQ44598.1| terminase, large subunit, putative [Roseobacter sp. MED193]
Length = 417
Score = 41.2 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 64/428 (14%), Positives = 117/428 (27%), Gaps = 89/428 (20%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ + G + + + Q++ +
Sbjct: 25 ILGGRGAGKTRAGA---EWIRTQVEGATPLGPGRGRRLALIGETYDQVRDVM-------- 73
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ S S W + M + +S P+ G
Sbjct: 74 --ILGDSGILACSPSDRRPQWKAGERKLIWAN-----GAMAQAFSAHDPEALRGPQFDTA 126
Query: 193 MAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
DE + + L + R + + R + ++ P K
Sbjct: 127 ---WADELAKWRRAREAWDMLQFSLRLGDDPR--VCVTTTPRNAALLRQLLASPSTV-KS 180
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE----EAL 306
+ PSF + ARY S + R E+ G I L+ +E A
Sbjct: 181 HAATEANRANLAPSFLSEVRARY-AGSRLGRQELDG----------ILLSDVEGAIWRAA 229
Query: 307 NREPCPDPYAP----LIMGCDIA---EEGGDNTVVVL--------RRGPVIEHLFDWS-- 349
P AP +++ D A +G D +++ L D +
Sbjct: 230 QLAELQVPTAPALDRIVVAVDPAVSSGKGSDACGIIVAGACLQGPVETWRAYVLADRTVQ 289
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLE 407
+ +++ D ++ + N GA + L + V + V
Sbjct: 290 GVGPLAWAKAVIAAHQEFAADRVVAEVNQGGALVENLLRQIDPLVGFQPVHASRGKV--- 346
Query: 408 FCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD 467
R E + + L + L + + + G S D
Sbjct: 347 ----VRAEPVAALYEQHRVHHLPGLAELEEQMCQMSQQGFQGQG-------------SPD 389
Query: 468 YSDGLMYT 475
D L++
Sbjct: 390 RVDALVWA 397
>gi|256023437|ref|ZP_05437302.1| predicted type I site-specific deoxyribonuclease, HsdR family
protein [Escherichia sp. 4_1_40B]
Length = 1031
Score = 41.2 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 49/327 (14%), Positives = 99/327 (30%), Gaps = 44/327 (13%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISV-ICLANSE--TQLKTTLWAEVSKWLSLLPNKHWFE 142
+G GK+ WL W+ P V I +E Q+++ V++ + +
Sbjct: 278 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMG-VNE--DIYRTSSGND 334
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY--SEERPDTFVGHHNTYGMAIINDE- 199
+ + HP PW L G S+ +E + + + DE
Sbjct: 335 LIATLNHPNPWLICSLVHKFGRRSEAEDNAATDAFITELQQSLTKTFRAKGDLFVFVDEC 394
Query: 200 ------------ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
+ PD + +G G + + + + G + +
Sbjct: 395 HRTQSGKLHNAMTAILPDALFIGFTGTPLMKKDKKKSV------EVFGPYIHTYKFDEAV 448
Query: 248 WKRFQIDTR------TVEGIDPSFHEGIIARYGLD-SDVTRVEVCGQFPQQDIDSFIPLN 300
+D R + S++ R ++ ++ +
Sbjct: 449 ADGVVLDLRYEARDIDQYLTSEKKVDDWFEAKTRGLSNLARTQLKQKWGSMQ-KLLSSKS 507
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
+E+ +N P +M +G N ++V + + + K+
Sbjct: 508 RLEQIVNDILLDMDTRPRLM------DGRGNAMLVC--SSIYQACKVYEMFSQTELAGKV 559
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYL 387
+ +V YRPDA I TG + L
Sbjct: 560 A-IVTSYRPDAASIKGEETGEGLTEKL 585
>gi|327400267|ref|YP_004341106.1| hypothetical protein Arcve_0358 [Archaeoglobus veneficus SNP6]
gi|327315775|gb|AEA46391.1| protein of unknown function DUF699 ATPase [Archaeoglobus veneficus
SNP6]
Length = 807
Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 57/166 (34%), Gaps = 35/166 (21%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS------TRPGISVICL 113
+V + + E I+A RG GKT + + +L+S RP + ++ +
Sbjct: 255 QVRVLQLFETFFDREKERKAVVITADRGRGKTAVLGIVTPYLISRMHRVLKRP-VRIMVV 313
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS----LSLHPAPWYSDVLHCSLGIDSKHY 169
A + ++T + + K L K++ +S ++ + + + K Y
Sbjct: 314 APTPQAVQTY-FRFLKKALVRQGMKNYKVKESNGLITVINSKFARVEYVVPRRAMIEKDY 372
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGF 214
+ II DEA+G V+ G
Sbjct: 373 AD----------------------IIIVDEAAGIDVPVLWQITEGA 396
>gi|148241989|ref|YP_001227146.1| hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307]
gi|147850299|emb|CAK27793.1| Hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307]
Length = 98
Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
+ +GR GKT L + L T+PG V LA S Q K WA++
Sbjct: 25 VFSGRRFGKTRLMLTAGVELCLTKPGAKVFHLAPSRKQAKDIAWADLK 72
>gi|331238525|ref|XP_003331917.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309310907|gb|EFP87498.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1036
Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 63/206 (30%), Gaps = 16/206 (7%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAG-----RGIGKTT 92
WG+ G +E ++ Q + +E+ + G S G G+GKT
Sbjct: 395 WGDLGQKVEVVQPSKAEQPDGLELTLLPFQLEGLYWMKKQETGPWSGGVLADEMGMGKTI 454
Query: 93 LNAWLVLWLMSTRPGIS--VICLANSETQLKTTLWA-EVSKWLSLLPNKHWFEMQSLSLH 149
L+L PG + +A + + W E+ K+ L W +
Sbjct: 455 QTIALIL--SDRVPGHRKQTLVIAPT---VAIMQWRNEIEKFAKGLTVNVWHGGNRSNAQ 509
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG--HHNTYGMAIINDEASGTPDVI 207
DV+ S + + + + H +I DEA D
Sbjct: 510 EEMENFDVVLTSFAVLESAFRRQNSGFRRKGQIIKESSLLHQINWHRVILDEAHNIKDRS 569
Query: 208 NLGILGFLTERNANRFWIMTSNPRRL 233
G E A W ++ P +
Sbjct: 570 CNTAKGAF-ELKATYRWCLSGTPLQN 594
>gi|315618351|gb|EFU98939.1| type I site-specific deoxyribonuclease, HsdR family protein
[Escherichia coli 3431]
Length = 1028
Score = 40.9 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 49/327 (14%), Positives = 99/327 (30%), Gaps = 44/327 (13%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISV-ICLANSE--TQLKTTLWAEVSKWLSLLPNKHWFE 142
+G GK+ WL W+ P V I +E Q+++ V++ + +
Sbjct: 275 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMG-VNE--DIYRTSSGND 331
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY--SEERPDTFVGHHNTYGMAIINDE- 199
+ + HP PW L G S+ +E + + + DE
Sbjct: 332 LIATLNHPNPWLICSLVHKFGRRSEAEDNAATDAFITELQQSLTKTFRAKGDLFVFVDEC 391
Query: 200 ------------ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
+ PD + +G G + + + + G + +
Sbjct: 392 HRTQSGKLHNAMTAILPDALFIGFTGTPLMKKDKKKSV------EVFGPYIHTYKFDEAV 445
Query: 248 WKRFQIDTR------TVEGIDPSFHEGIIARYGLD-SDVTRVEVCGQFPQQDIDSFIPLN 300
+D R + S++ R ++ ++ +
Sbjct: 446 ADGVVLDLRYEARDIDQYLTSEKKVDDWFEAKTRGLSNLARTQLKQKWGSMQ-KLLSSKS 504
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
+E+ +N P +M +G N ++V + + + K+
Sbjct: 505 RLEQIVNDILLDMDTRPRLM------DGRGNAMLVC--SSIYQACKVYEMFSQTELAGKV 556
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYL 387
+ +V YRPDA I TG + L
Sbjct: 557 A-IVTSYRPDAASIKGEETGEGLTEKL 582
>gi|290954633|ref|YP_003485815.1| helicase-like protein [Streptomyces scabiei 87.22]
gi|290963375|ref|YP_003494557.1| helicase-like protein [Streptomyces scabiei 87.22]
gi|260644159|emb|CBG67232.1| putative helicase-like protein [Streptomyces scabiei 87.22]
gi|260652901|emb|CBG76036.1| putative helicase-like protein [Streptomyces scabiei 87.22]
Length = 889
Score = 40.9 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
++ ++ P+ +G I + G GKT + A + P ++ + L
Sbjct: 23 FSARSSVPPQGARGTIVSATGSGKTIMAAASA---LECFPEGRILVTVPTLDLL 73
>gi|326779045|ref|ZP_08238310.1| type III restriction protein res subunit [Streptomyces cf. griseus
XylebKG-1]
gi|326659378|gb|EGE44224.1| type III restriction protein res subunit [Streptomyces cf. griseus
XylebKG-1]
Length = 609
Score = 40.9 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 41/124 (33%), Gaps = 24/124 (19%)
Query: 6 PTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAH 65
P +PE E + +F PWG G R+WQ ME
Sbjct: 8 PESPEPETVTTTTASH-HLSPAFPGRA----PWGTAG-------KLRAWQQGAME----- 50
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
V + A G GKTT L WL+ + +A +E LK W
Sbjct: 51 --RYVQEQPRDFLAVATP---GAGKTTFALTLASWLLHHHVVQQITVVAPTEH-LKKQ-W 103
Query: 126 AEVS 129
AE +
Sbjct: 104 AEAA 107
>gi|156847104|ref|XP_001646437.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156117114|gb|EDO18579.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 1055
Score = 40.9 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 10/134 (7%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
++AGRG GK+ + +S ++ + S LKT L+ + K L +
Sbjct: 279 VTLTAGRGRGKSAALGISIAAAVS-HGYSNIFVTSPSPENLKT-LFEFIFKAFDALGYQE 336
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + ++ + D H T+ ++ ++ DE
Sbjct: 337 HIDYDIIQSTNPQFNKAIVRVDIKRD--HRQTIQYIMPQDHQVLGQAE------LVVIDE 388
Query: 200 ASGTPDVINLGILG 213
A+ P I +LG
Sbjct: 389 AAAIPLPIVKKLLG 402
>gi|49476071|ref|YP_034112.1| phage related protein [Bartonella henselae str. Houston-1]
gi|49238879|emb|CAF28172.1| phage related protein [Bartonella henselae str. Houston-1]
Length = 402
Score = 40.9 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 35/257 (13%), Positives = 79/257 (30%), Gaps = 13/257 (5%)
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG-IDSKHYSTMCRTYSEERPDTFVGH 187
++ N+ E ++ P+ D I SK + +R
Sbjct: 21 ARQFQNSLNESSLEEIKRAIESYPFLQDYYEIGDKYIKSKDGRIVYVFAGLDR--NIASI 78
Query: 188 HNTYGMAI-INDEASGTPDVINLGILGFLTERNA--NRFWIMTSNPRRLSGKFYEIFNK- 243
+ + + DEA + ++ L E N +T NP R + + F
Sbjct: 79 KSMGRVFLCWVDEAEPVTETAWQTLIPTLREEGNDWNAELWVTWNPCRENAPVEKRFRNV 138
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
K +I R + A + G++ Q ++ ++E
Sbjct: 139 NNPHIKGAEITWRDNPQFPEKLNRDRKADLEQRPEHYNHIWEGEYLQTVEGAYYQKALLE 198
Query: 304 EALNREPCPDPYAP---LIMGCDIAEEG--GDNTVVVLRR-GPVIEHLFDWSKTDLRTTN 357
+ P P + + DI G D T + + + + D+ + + +
Sbjct: 199 ASREGRITTVPRDPLMQIRIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLS 258
Query: 358 NKISGLVEKYRPDAIII 374
+ + ++ A+++
Sbjct: 259 EHVGWVFQRGYDKALMV 275
>gi|6467533|gb|AAF13179.1|AF181080_1 putative gene transfer agent large terminase [Rhodobacter
capsulatus]
Length = 393
Score = 40.9 bits (94), Expect = 0.50, Method: Composition-based stats.
Identities = 66/419 (15%), Positives = 120/419 (28%), Gaps = 68/419 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWLSL 134
GRG GKT A W+ G V + + Q++ +
Sbjct: 2 GGRGAGKTRAGA---EWVRMQVEGAGPADAGPAHRVALVGETFDQVRDVM---------- 48
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
F + P + + YS + P+ G A
Sbjct: 49 -----IFGESGILACSPPDRRPEWEATKRRLVWANGATAQAYSAQEPEALRGPQFD---A 100
Query: 195 IINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DE + + + L + ++T+ P R G I N P
Sbjct: 101 AWVDELAKWRRAEETWDMLQFAL-RLGKHPQQVITTTP-RNVGVLKAILNNPSTV-VTHA 157
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ SF + ARY + + R E+ G + + +E R P
Sbjct: 158 PTEANRAYLAESFLAEVQARY-AGTRLGRQELEGVLLEDVEGALWTTAQLEGL--RLASP 214
Query: 313 DPYAPLIMGCDIA---EEGGDNTVVVL--------RRGPVIEHLFDWS-KTDLRTTNNKI 360
+++ D A G D +V+ + L D S +
Sbjct: 215 PAMDRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASVRGRPTDWARAA 274
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+E++ + ++ + N G L + V +A+ ++ R E +
Sbjct: 275 IAAMERWGAEKLVAEVNQGGEMVESVLRQIDPLV-----PFKALRASRGKSARAE---PV 326
Query: 421 ADWLEFASLINH-SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
A E + + G + L+ + + G G S D D L++ E
Sbjct: 327 AALYEQGRVKHCRDGRLGALED-QMCRMTVRGY--------AGKGSPDRVDALVWAMTE 376
>gi|148548588|ref|YP_001268690.1| hypothetical protein Pput_3380 [Pseudomonas putida F1]
gi|148512646|gb|ABQ79506.1| protein of unknown function DUF264 [Pseudomonas putida F1]
Length = 433
Score = 40.9 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 55/303 (18%), Positives = 93/303 (30%), Gaps = 43/303 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVS-KWLSLLPNKH 139
AG G GKT + + + P I A + Q++ + EV+ W + K
Sbjct: 23 AGFGSGKTWVGCAALCKHVWEWPRIDSGYFAPTYPQIRDIFFPTIEEVAFDWGLKVKTKE 82
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
SD +T+CR S E+P T VG + + DE
Sbjct: 83 ---------------SDKEVEFYSGGQYRSTTICR--SMEKPQTIVGFKIGHAL---VDE 122
Query: 200 ASGTP----DVINLGILGFL--TERNANRFWIMTSNPRRLSGKFYEIFNKPL-------D 246
P + I+ + +T+ P Y+ F K L
Sbjct: 123 LDVLPALKAEHAWRKIIARMRYNVPGLKNGVDVTTTPEG-FKFVYQQFVKQLREKPALQG 181
Query: 247 DWKRFQIDTRTVEG-IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
+ Q T E + P + ++ Y + + + GQF + S I +
Sbjct: 182 MYGLVQASTFDNELNLPPDYIPSLMESY--PAQLILAYLNGQFVNLNAGS-IYHAYDRKL 238
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD-WSKTDLRTTNNKISGLV 364
+ +P PL +G D V V R + + D +I
Sbjct: 239 NSCFDTVEPGEPLFIGMDFNVGKMAAIVHVKRPDGKPRAVDELIDGFDTPDMIRRIKERY 298
Query: 365 EKY 367
++
Sbjct: 299 WRH 301
>gi|51557524|ref|YP_068358.1| DNA packaging terminase subunit 1 [Suid herpesvirus 1]
gi|40253983|tpg|DAA02178.1| TPA_exp: UL15 protein [Suid herpesvirus 1]
Length = 735
Score = 40.9 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 24/153 (15%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS----KWLSLLPNKHWFEMQ 144
GKT L+ ++T GI V A+ + + E+ +W H
Sbjct: 277 GKTWFLVPLIALALATFRGIRVGYTAHIRKATEPV-FEEIHARLRRWCRDARVDHVKGEN 335
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
P S ++ S + G + + + DEA+
Sbjct: 336 ITVTFPDGARSTIVF----------------ASSHNTNGIRGQ--DFNLLFV-DEANFIR 376
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
ILGF+ + + ++ ++N + S F
Sbjct: 377 PDAVQTILGFMNQASCKIIFVSSTNTGKASTSF 409
>gi|28395422|gb|AAO38880.1| UL15 [Suid herpesvirus 1]
Length = 753
Score = 40.9 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 49/153 (32%), Gaps = 24/153 (15%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS----KWLSLLPNKHWFEMQ 144
GKT L+ ++T GI V A+ + + E+ +W H
Sbjct: 293 GKTWFLVPLIALALATFRGIRVGYTAHIRKATEPV-FEEIHARLRRWCRDARVDHVKGEN 351
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
P S ++ S + G + + + DEA+
Sbjct: 352 ITVTFPDGARSTIVF----------------ASSHNTNGIRGQ--DFNLLFV-DEANFIR 392
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
ILGF+ + + ++ ++N + S F
Sbjct: 393 PDAVQTILGFMNQASCKIIFVSSTNTGKASTSF 425
>gi|330989588|gb|EGH87691.1| hypothetical protein PLA107_31509 [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 433
Score = 40.9 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 54/303 (17%), Positives = 90/303 (29%), Gaps = 43/303 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVS-KWLSLLPNKH 139
AG G GKT + + + P I+ A + Q++ + EV+ W + K
Sbjct: 23 AGFGSGKTWVGCAGICKHVWEWPRINSGYFAPTYPQIRDIFFPTIEEVAFDWGLKVKTKE 82
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
SD +T+CR S E+P T VG + + DE
Sbjct: 83 ---------------SDKEVEFYSGGQYRSTTICR--SMEKPQTIVGFKIGHAL---VDE 122
Query: 200 ASGTP----DVINLGILGFL--TERNANRFWIMTSNPRRLSGKFYEIFNKPL-------D 246
P + I+ + +T+ P Y+ F K L
Sbjct: 123 LDVLPALKAEHAWRKIIARMRYNAPGLKNGVDVTTTPEG-FKFVYQQFVKQLREKPGMQG 181
Query: 247 DWKRFQIDTRTVEG-IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
+ Q T E + P + ++ Y + + GQF + S I +
Sbjct: 182 MYGLVQASTFDNELNLPPDYIPSLMESY--PPQLILAYLNGQFVNLNAGS-IYHAYDRKL 238
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW-SKTDLRTTNNKISGLV 364
PL +G D V R + ++ D +I
Sbjct: 239 NGCFDSVQDGEPLFIGMDFNVGKMAAITHVKRADGKPRAVDEFIDGFDTPDMIRRIKERY 298
Query: 365 EKY 367
+Y
Sbjct: 299 WRY 301
>gi|307940746|gb|ADN95987.1| polyprotein [Chionodraco hamatus]
Length = 2968
Score = 40.9 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL------VLWLMSTRPGI 108
Q+ + CL+ ++ NP+ F I+ G G GK+ L L +L + P
Sbjct: 2284 QMSIFYQIRQWCLDKISGKNPDPFHVFITGGAGTGKSHLIKALQYETTRLLSPLCDHPDS 2343
Query: 109 S-VICLANS 116
V+ A +
Sbjct: 2344 VCVLLTAPT 2352
>gi|294677220|ref|YP_003577835.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
gi|294476040|gb|ADE85428.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
Length = 455
Score = 40.9 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 67/421 (15%), Positives = 121/421 (28%), Gaps = 68/421 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ G V + + Q++ +
Sbjct: 62 IMGGRGAGKTRAGA---EWVRMQVEGAGPADAGPAHRVALVGETFDQVRDVM-------- 110
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
F + P + + YS + P+ G
Sbjct: 111 -------IFGESGILACSPPDRRPEWEATKRRLVWANGATAQAYSAQEPEALRGPQFD-- 161
Query: 193 MAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + + L + ++T+ P R G I N P
Sbjct: 162 -AAWVDELAKWRRAEETWDMLQFAL-RLGKHPQQVITTTP-RNVGVLKAILNNPSTV-VT 217
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ SF + ARY + + R E+ G + + +E R
Sbjct: 218 HAPTEANRAYLAESFLAEVQARY-AGTRLGRQELEGVLLEDVEGALWTTAQLEGL--RLA 274
Query: 311 CPDPYAPLIMGCDIA---EEGGDNTVVVL--------RRGPVIEHLFDWS-KTDLRTTNN 358
P +++ D A G D +V+ + L D S +
Sbjct: 275 SPPAMDRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASVRGRPTDWAR 334
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+E++ + ++ + N G L + V +A+ ++ R E
Sbjct: 335 AAIAAMERWGAEKLVAEVNQGGEMVESVLRQIDPLV-----PFKALRASRGKSARAE--- 386
Query: 419 KMADWLEFASLINH-SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
+A E + + G + L+ + + G G S D D L++
Sbjct: 387 PVAALYEQGRVKHCRDGRLGALED-QMCRMTVRGY--------AGKGSPDRVDALVWAMT 437
Query: 478 E 478
E
Sbjct: 438 E 438
>gi|225683146|gb|EEH21430.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb03]
Length = 2011
Score = 40.9 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RPG V+ +A L E V W L +
Sbjct: 1163 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAP-----MKALVRERVHDWKRRLTVPMGLK 1217
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + II DE
Sbjct: 1218 LVELTGDNTPDTKTIRDSDIIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1268
>gi|219846951|ref|YP_002333526.2| DNA packaging terminase subunit 1 [Equid herpesvirus 9]
gi|226423816|dbj|BAH02470.2| DNA packaging protein [Equid herpesvirus 9]
Length = 734
Score = 40.9 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 24/153 (15%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLAN----SETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GKT L+ ++T GI + A+ +E + + A + +W P H
Sbjct: 264 GKTWFLVPLIALALATFKGIKIGYTAHIRKATEP-VFDEIGARLRQWFGNSPVDHVKGEN 322
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
P S ++ S + G + + + DEA+
Sbjct: 323 ISFSFPDGSKSTIVF----------------ASSHNTNGIRGQ--DFNLLFV-DEANFIR 363
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
I+GFL + N ++ ++N + S F
Sbjct: 364 PEAVQTIIGFLNQTNCKIIFVSSTNTGKASTSF 396
>gi|38640180|ref|NP_944136.1| Dda DNA helicase [Aeromonas phage Aeh1]
gi|33414865|gb|AAQ17908.1| Dda DNA helicase [Aeromonas phage Aeh1]
Length = 454
Score = 40.9 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 28/156 (17%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFK-GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+++ C + + K IS G GK+ L L+ L+ G + C A +
Sbjct: 8 LAKIILTDCQKTAIDAVLTDKKHITISGPAGSGKSFLTKILIQKLLDLNSGAVITC-APT 66
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
Q K L + + + +H L I Y + R +
Sbjct: 67 -HQAKIVL-----------------------SKMSGFTASTIHSVLKIHPDTYEDV-REF 101
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
+ + D +I DEAS + + +L
Sbjct: 102 KQSKSDK-AKEDLKAVRYLIVDEASMVDNDLFEILL 136
>gi|9629774|ref|NP_045262.1| DNA packaging terminase subunit 1 [Equid herpesvirus 4]
gi|2605992|gb|AAC59564.1| 47/44 [Equid herpesvirus 4]
Length = 734
Score = 40.9 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 24/153 (15%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLAN----SETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GKT L+ ++T GI + A+ +E + + A + +W P H
Sbjct: 264 GKTWFLVPLIALALATFKGIKIGYTAHIRKATEP-VFDEIGARLRQWFGNSPVDHVKGEN 322
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
P S ++ S + G + + + DEA+
Sbjct: 323 ISFSFPDGSKSTIVF----------------ASSHNTNGIRGQ--DFNLLFV-DEANFIR 363
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
I+GFL + N ++ ++N + S F
Sbjct: 364 PEAVQTIIGFLNQTNCKIIFVSSTNTGKASTSF 396
>gi|50313286|ref|YP_053090.1| DNA packaging terminase subunit 1 [Equid herpesvirus 1]
gi|139648|sp|P28969|TRM3_EHV1B RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein 44; AltName: Full=Terminase
large subunit
gi|59798996|sp|P84396|TRM3_EHV1V RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein 44; AltName: Full=Terminase
large subunit
gi|42795172|gb|AAS45929.1| putative terminase [Equid herpesvirus 1]
gi|49617029|gb|AAT67302.1| DNA packaging protein [Equid herpesvirus 1]
Length = 734
Score = 40.9 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 24/153 (15%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLAN----SETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GKT L+ ++T GI + A+ +E + + A + +W P H
Sbjct: 264 GKTWFLVPLIALALATFKGIKIGYTAHIRKATEP-VFDEIGARLRQWFGNSPVDHVKGEN 322
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
P S ++ S + G + + + DEA+
Sbjct: 323 ISFSFPDGSKSTIVF----------------ASSHNTNGIRGQ--DFNLLFV-DEANFIR 363
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
I+GFL + N ++ ++N + S F
Sbjct: 364 PEAVQTIIGFLNQTNCKIIFVSSTNTGKASTSF 396
>gi|116196286|ref|XP_001223955.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51]
gi|88180654|gb|EAQ88122.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51]
Length = 2013
Score = 40.9 bits (94), Expect = 0.56, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 19/152 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPN-----PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
LE + H N + + + G GKT + W RPG
Sbjct: 1135 ALEEIYAQRFHFFNPMQTQLFHTLYHRPANVLLGSPTGSGKTVAAELAMWWAFRERPGSK 1194
Query: 110 VICLANSETQLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI-DSK 167
V+ +A L E V W + L ++ L+ P + + I +
Sbjct: 1195 VVYIAP-----MKALVRERVKDWGARLAKPLGLKLVELTGDNTPDTRTIQDADIIITTPE 1249
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + R++ G+ + II DE
Sbjct: 1250 KWDGISRSWQT------RGYVRKVSLVII-DE 1274
>gi|317499861|ref|ZP_07958099.1| pbsx family Phage terminase [Lachnospiraceae bacterium 8_1_57FAA]
gi|316898763|gb|EFV20796.1| pbsx family Phage terminase [Lachnospiraceae bacterium 8_1_57FAA]
Length = 428
Score = 40.9 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 32/207 (15%), Positives = 64/207 (30%), Gaps = 28/207 (13%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------ 247
+ +E S ILG L + I+++NP Y+ F +
Sbjct: 121 IVWIEECSEVKYAGFKEILGRLRHPTLSNHIILSTNPVSKGNWCYKYFFQDKKKKVFVLD 180
Query: 248 ----------------WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ +D + + E + D D+ RV G+F
Sbjct: 181 DEKLYKERTVVVGNTYYHHSTVD--DNFFVPKEYVEQLDDLQTHDPDLYRVARQGRFGVN 238
Query: 292 DIDSFIPLNIIEEA--LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS 349
F P ++E A + +E G D N + + + L+ +
Sbjct: 239 GSLVF-PQFVVEPANQVEKEIKAIRTPLEKNGMDFGFVTSYNAALRMIVDHDEKILYIYR 297
Query: 350 K-TDLRTTNNKISGLVEKYRPDAIIID 375
+ T+ +I+ ++ ++ I D
Sbjct: 298 EYYSRNKTDPEIAEDMKDWKDIVIKAD 324
>gi|189913376|ref|YP_001964605.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
gi|167781444|gb|ABZ99741.1| ATP-dependent RNA helicase, DEAD-box family (DeaD) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 534
Score = 40.9 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 42/270 (15%), Positives = 73/270 (27%), Gaps = 41/270 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F +F L P +G GF +P Q + + +V
Sbjct: 10 DTEVGNDFQSFGLR--PEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQT------ 61
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET---QLKTTLWAEVSKWLSLLPN 137
G GKT L + G+ V+ L + Q+ L+
Sbjct: 62 ------GTGKTAAYGLPCLNRIKVEDGMQVLVLTPTRELALQVSDELFK----------L 105
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+++ +++ YS + +T R + + +I
Sbjct: 106 GKHLGIKTTTIYGGSSYSKQITQVAKGAQVAVATPGRLLDLLKGKELKNFKPSM---VIL 162
Query: 198 DEAS-----GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DEA G D I T+R F P + Y+ +
Sbjct: 163 DEADEMLDMGFMDDIESIFNLLPTKRQTLLFSATMPEPIKKLASKYQTHP------AHVK 216
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
I + II + V R+
Sbjct: 217 IAATEKSSKNIEQVYYIIDEAEREIAVVRI 246
>gi|189913047|ref|YP_001964936.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167777723|gb|ABZ96023.1| ATP-dependent RNA helicase (superfamily II) [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
Length = 529
Score = 40.9 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 42/270 (15%), Positives = 73/270 (27%), Gaps = 41/270 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F +F L P +G GF +P Q + + +V
Sbjct: 5 DTEVGNDFQSFGLR--PEILQGITEAGFESPSPIQKQAIPLVLEGKDLIAQAQT------ 56
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET---QLKTTLWAEVSKWLSLLPN 137
G GKT L + G+ V+ L + Q+ L+
Sbjct: 57 ------GTGKTAAYGLPCLNRIKVEDGMQVLVLTPTRELALQVSDELFK----------L 100
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+++ +++ YS + +T R + + +I
Sbjct: 101 GKHLGIKTTTIYGGSSYSKQITQVAKGAQVAVATPGRLLDLLKGKELKNFKPSM---VIL 157
Query: 198 DEAS-----GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DEA G D I T+R F P + Y+ +
Sbjct: 158 DEADEMLDMGFMDDIESIFNLLPTKRQTLLFSATMPEPIKKLASKYQTHP------AHVK 211
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
I + II + V R+
Sbjct: 212 IAATEKSSKNIEQVYYIIDEAEREIAVVRI 241
>gi|315649164|ref|ZP_07902254.1| Tex-like protein protein-like protein [Paenibacillus vortex V453]
gi|315275383|gb|EFU38741.1| Tex-like protein protein-like protein [Paenibacillus vortex V453]
Length = 737
Score = 40.9 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI 342
EV G+ ++ + I + + P ++G D A G VV G ++
Sbjct: 300 EVRGELTEKGENQAISIF-AGNLRSLLLQPPVKGRCVLGVDPAYRTGCKLAVVDDTGKLL 358
Query: 343 EHLFDWSK---TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
E + + K L+ KY I+I G T
Sbjct: 359 EVAVTYPTPPANKRQEAAAKFKQLIAKYGIKLIVI-----GNGTASR 400
>gi|116625332|ref|YP_827488.1| hypothetical protein Acid_6277 [Candidatus Solibacter usitatus
Ellin6076]
gi|116228494|gb|ABJ87203.1| hypothetical protein Acid_6277 [Candidatus Solibacter usitatus
Ellin6076]
Length = 212
Score = 40.5 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 13/140 (9%)
Query: 323 DIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
D A T + LR V + K+ + P +++DA GA
Sbjct: 33 DPATYEFRKT-ITLRLRHVERIPLATEYVQVVERVAKVMRKLGAQGPAHLVVDATGVGAP 91
Query: 383 TCDYLEMLG-----YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE------FASLIN 431
+ L G + V G + R + +L V + E L+
Sbjct: 92 VVELLRRAGMGCRLWPVSITGGPAEGYGDGYYRVPKRDLVVGLQVMFEQGALEIAGGLVE 151
Query: 432 HSGLIQNLKSLKSFIVPNTG 451
+ L++ + ++ + + G
Sbjct: 152 RAALVKEMTDMRV-KMTSRG 170
>gi|261409036|ref|YP_003245277.1| Tex-like protein [Paenibacillus sp. Y412MC10]
gi|261285499|gb|ACX67470.1| Tex-like protein protein-like protein [Paenibacillus sp. Y412MC10]
Length = 740
Score = 40.5 bits (93), Expect = 0.61, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI 342
EV G+ ++ + I + + P ++G D A G VV G ++
Sbjct: 300 EVRGELTEKGENQAISIF-AGNLRSLLLQPPVKGRRVLGVDPAYRTGCKLAVVDDTGKLL 358
Query: 343 EHLFDWSK---TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
E + R K L+ KY I+I G T
Sbjct: 359 EVAVTYPTPPANKRREAAAKFKELIAKYGIKLIVI-----GNGTASR 400
>gi|72021085|ref|XP_793570.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
gi|115928806|ref|XP_001188414.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 1117
Score = 40.5 bits (93), Expect = 0.61, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 11/129 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLM-STRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ A G GKT + + + L + T P V+ LA + E++ +
Sbjct: 8 VQAKSGTGKTCVFSVIALEGIDLTNPSTQVLILAPT---------REIAVQIQDTIRAIG 58
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
EM+ L H + + H + ++ + + DEA
Sbjct: 59 CEMEGLRSHVFIGGTLFGPDRQKLKKCHIAVGTPG-RIKQLIEYEVLKTGTIRLFVLDEA 117
Query: 201 SGTPDVINL 209
D
Sbjct: 118 DKLLDDTFQ 126
>gi|209694357|ref|YP_002262285.1| putative bacteriophage terminase [Aliivibrio salmonicida LFI1238]
gi|208008308|emb|CAQ78458.1| putative bacteriophage terminase [Aliivibrio salmonicida LFI1238]
Length = 598
Score = 40.5 bits (93), Expect = 0.62, Method: Composition-based stats.
Identities = 34/246 (13%), Positives = 73/246 (29%), Gaps = 41/246 (16%)
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+D G + + +Y + S + + F F I+ L +
Sbjct: 342 ITVDDAIKGGATFFNMDKLRRKYPIKS-IFDNVLRCVFLDDSASFF----NIKALLACKT 396
Query: 311 CPDPYAPLIMG-CDIAEE----------------GGDNTVVV-----LRRGPVIEHLFDW 348
+ + MG C A + G D+ +V L++G V L
Sbjct: 397 DTSKWKTIDMGKCRPAGDLEVLVGYDPRGGGQADGSDDAGLVISLKPLKKGGVFRFLERI 456
Query: 349 S--KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I G+ EKY + +D + G+ + + + V
Sbjct: 457 RLKGSSYEEQAKAIEGITEKYHVVHLEMDTSGVGSAVAELVRKFYPSLKEVNYSPEV--- 513
Query: 407 EFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R + K + + L ++ + ++ + ++ + S R K
Sbjct: 514 -----KRM-MAYKAREIINAGRLQFDDSWDDVVHSFLMIRQHTTKASNQITMISTRTKRG 567
Query: 464 KSTDYS 469
D +
Sbjct: 568 SHADLA 573
>gi|19114536|ref|NP_593624.1| ATP-dependent 3' to 5' DNA helicase (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74698622|sp|Q9HE09|MFH2_SCHPO RecName: Full=Putative ATP-dependent RNA helicase mfh2; AltName:
Full=FancM homolog protein 2
gi|12038920|emb|CAC19734.1| ATP-dependent 3' to 5' DNA helicase (predicted)
[Schizosaccharomyces pombe]
Length = 783
Score = 40.5 bits (93), Expect = 0.62, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 13/115 (11%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G+GKT + A ++L P +I LA ++ L + + M
Sbjct: 134 GLGKTFIAAVVMLNYFRWFPESKIIFLAPTKPLL----------LQQRVACSNVAGMSPG 183
Query: 147 SLHPAPWYSDVLHCSLGIDSKH-YSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ ++K + +T + + + +I DEA
Sbjct: 184 ATAELNGEVSPDRRLFEYNTKRVFFMTPQTLQNDLKEHL--LDAKSIICLIFDEA 236
>gi|329936128|ref|ZP_08285927.1| helicase-like protein [Streptomyces griseoaurantiacus M045]
gi|329304446|gb|EGG48325.1| helicase-like protein [Streptomyces griseoaurantiacus M045]
Length = 1056
Score = 40.5 bits (93), Expect = 0.62, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q N+ + + +G I + G GKT A + PG V+
Sbjct: 18 QKARFREWAGSPFNTRSPVPEQGSRGTIVSATGSGKTITAAACA---LECFPGARVLVTV 74
Query: 115 NSETQL 120
+ L
Sbjct: 75 PTLDLL 80
>gi|147668985|ref|YP_001213803.1| hypothetical protein DehaBAV1_0339 [Dehalococcoides sp. BAV1]
gi|146269933|gb|ABQ16925.1| hypothetical protein DehaBAV1_0339 [Dehalococcoides sp. BAV1]
Length = 457
Score = 40.5 bits (93), Expect = 0.63, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 69/251 (27%), Gaps = 53/251 (21%)
Query: 249 KRFQIDTRTVEGIDPSFHE---GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
+ F+ D V +P++ R G + + + P ++
Sbjct: 185 RHFRYDWEAVAAHNPAYLAYALSEKERLGENHPLFLTQYR-LLPVSGGGGMFSNEQLDLL 243
Query: 306 LNREPC---PDPYAPLIMGCDIAEE-----GGDNTVVVLRRGPVIEHLFD---------- 347
PC P+ + G D+A E G T V LRR + + +
Sbjct: 244 KGNHPCQIYPEKGKVYVAGLDLAGEDSQTGGISPTTVNLRRDSSVLTIAELDYTFAKAPY 303
Query: 348 ------------WSKTDLRTTNNKISGLVEK-YRPDAIIIDANNTGARTCDYLEM-LGYH 393
W T K+ L+ K ++ + +DA G +L LG
Sbjct: 304 NLPQVRLVCHYSWQGTRHALLYEKLVELLGKVWKCRKVAVDATGLGQPVASFLRESLGSR 363
Query: 394 VYRVLGQKRAVDLEFCRNR-------RTELHVKMAD------WLEFASLINHSGLIQNLK 440
+ Q A N R +++ W E Q +
Sbjct: 364 ILPFAFQ-PASKSRLGFNLLSAVNSGRLKMYAANGSSEYTLFWQEMGLARADYRQSQQMN 422
Query: 441 SLKSFIVPNTG 451
++ G
Sbjct: 423 ---FYVETTRG 430
>gi|325849110|ref|ZP_08170602.1| phage terminase, large subunit, PBSX family [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325480355|gb|EGC83418.1| phage terminase, large subunit, PBSX family [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 439
Score = 40.5 bits (93), Expect = 0.64, Method: Composition-based stats.
Identities = 19/173 (10%), Positives = 45/173 (26%), Gaps = 14/173 (8%)
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK----------PLDDWKRFQID 254
D I + FW + NP + Y +
Sbjct: 149 DSIKEAFNRTAAAKRRKFFWDL--NPSSPNHFIYSDHIDKYQNMIDEGIDFGGYNYKHFT 206
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
I + I +Y +S + ++ G + + I + + P
Sbjct: 207 IDDNINISDQRKKEIKLQYDPNSVWYKRDILGLRVVAEGLIYKQFADIPDNYLIKEKPHE 266
Query: 315 YAPLIMGCDIAEEGGDNTVVV--LRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ +G D + + + RG + + + + + L++
Sbjct: 267 LQLIQIGVDFGGNNSKHAFICTGISRGFKKVYALRSERLEPDKPTDLYNQLID 319
>gi|193671687|ref|XP_001946103.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A containing DEAD/H box
1-like [Acyrthosiphon pisum]
Length = 848
Score = 40.5 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 15/153 (9%)
Query: 87 GIGKTTLNAWLVLWLMS----TRPGISVICLANSETQLKTTLWAEVSKW-LSLLPNKHWF 141
G+GKT + L + T P + + + + T + E +W +++ K+
Sbjct: 337 GLGKT-VQVIAFLAHLKETGRTHPDLPQLIVVPAST--LDNWYQEFKRWCPTMIVEKYHG 393
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
M W G + + P+ I+ DEA
Sbjct: 394 SMDERRYMRTKW------IRKGFGDVDVILTTYSCAANSPEEKKLFKTKEFHYIVYDEAH 447
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
++ + + N N ++T P + +
Sbjct: 448 KLKNMTSQTFE-VFSNFNGNYKILLTGTPLQNN 479
>gi|22855048|ref|NP_690654.1| hypothetical protein SPP1p003 [Bacillus phage SPP1]
gi|1729903|sp|P54308|TERL_BPSPP RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein G2P; AltName: Full=Terminase large subunit
gi|15466|emb|CAA39537.1| terminase [Bacillus phage SPP1]
gi|2764840|emb|CAA66573.1| unnamed protein product [Bacillus phage SPP1]
Length = 422
Score = 40.5 bits (93), Expect = 0.69, Method: Composition-based stats.
Identities = 68/418 (16%), Positives = 136/418 (32%), Gaps = 48/418 (11%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC--LANSETQLKTTLWAEVSKWL 132
+ K + GRG K+T A ++ LM P ++ + N+ Q +++ ++ + +
Sbjct: 24 AQHLKYVLKGGRGSAKSTHIAMWIILLMMMMPITFLVIRRVYNTVEQ---SVFEQLKEAI 80
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT-FVGHHNTY 191
+L H + + +P + I + + + S + G
Sbjct: 81 DMLEVGHLW-----KVSKSPLRLTYIPRGNSIIFRGGDDVQKIKSIKASKFPVAGMWIEE 135
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIFNKPLDDWKR 250
+E I +L + + N P+R ++FN
Sbjct: 136 LAEFKTEEEVSV---IEKSVLRAELPPGCRYIFFYSYNPPKRKQSWVNKVFNSSFLPANT 192
Query: 251 FQIDT--RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
F + + +F E + R E G+ + F L IEE +
Sbjct: 193 FVDHSTYLQNPFLSKAFIEEAEEVKRRNELKYRHEYLGEALGSGVVPFENLQ-IEEGIIT 251
Query: 309 EPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLV 364
+ + + G D G D V +R I + + D + + + + V
Sbjct: 252 DAEVARFDNIRQGLDFG-YGPDPLAFVRWHYDKRKNRIYAIDEL--VDHKVSLKRTADFV 308
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL 424
K + ++ I A+++ R+ D L+ L + + R+ G K+ D R WL
Sbjct: 309 RKNKYESARIIADSSEPRSIDALK-LEHGINRIEGAKKGPDSVEHGER----------WL 357
Query: 425 EFASLINHSGL-----IQNLKSLKSFIVPNTGEL-AIESKRVKGAKSTDYSDGLMYTF 476
+ I L + +++ N + +E K D Y F
Sbjct: 358 DELDAIVIDPLRTPNIAREFENIDYQTDKNGDPIPRLEDKDNHTI------DATRYAF 409
>gi|281416465|ref|YP_003347385.1| terminase large subunit [Enterococcus phage phiFL4A]
gi|270209641|gb|ACZ64180.1| terminase large subunit [Enterococcus phage phiFL4A]
Length = 418
Score = 40.5 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 46/323 (14%), Positives = 95/323 (29%), Gaps = 35/323 (10%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG KTT A + LM P ++I L ++T + E+ ++ + + +F+
Sbjct: 52 RGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDT---DVV--EIILQVAKVLSSKYFKTLV 106
Query: 146 LSLH--PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+L+ + + + G H +I D+
Sbjct: 107 FALYGVELVLLKETTTEIDTNLKTSSRGTSQLLGMGIYASLTGKHAD---IVITDDIVNI 163
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI---FNKPLDDWKRF---QIDTRT 257
D ++ + N + G+F ++K K + D
Sbjct: 164 KDRVSRA-----EREKTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKMPNVKKFDCYE 218
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
ID + + + + + + F + N +
Sbjct: 219 TGLIDKEQRKAL--QQAMTPSLFAANYELKHIADSESLFTAPTYTD-NTNLIYNGVAH-- 273
Query: 318 LIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
D A G D+T + + G +I + W K + +I L + Y+
Sbjct: 274 ----IDAAYGGDDSTAFTIFKEQKDGTLIGYGKKWQKH-VDDCIPEILQLHQHYQAGTFY 328
Query: 374 IDANNTGARTCDYLEMLGYHVYR 396
+ N +L G +V +
Sbjct: 329 NETNGDKGYLAKHLIERGQYVQK 351
>gi|331229057|ref|XP_003327195.1| DNA repair protein rad16 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309306185|gb|EFP82776.1| DNA repair protein rad16 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 968
Score = 40.5 bits (93), Expect = 0.72, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 11/152 (7%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGIS--VICLANSETQLKTTLWA-EVSKWLSLLPNKHWFEM 143
G+GKT L+L PG + +A + + W E+ K+ L W
Sbjct: 398 GMGKTIQTIALIL--SDRVPGHRKQTLVIAPT---VAIMQWRNEIEKFAKGLTVNVWHGG 452
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG--HHNTYGMAIINDEAS 201
+ DV+ S + + + + H +I DEA
Sbjct: 453 NRSNAQEEMENFDVVLTSFAVLESAFRRQNSGFRRKGQIIKESSLLHQINWHRVILDEAH 512
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
D G E A W ++ P +
Sbjct: 513 NIKDRSCNTAKGAF-ELKATYRWCLSGTPLQN 543
>gi|289976633|gb|ADD21678.1| DNA maturase B [Caulobacter phage Cd1]
Length = 602
Score = 40.5 bits (93), Expect = 0.72, Method: Composition-based stats.
Identities = 33/219 (15%), Positives = 62/219 (28%), Gaps = 29/219 (13%)
Query: 35 FFPWGEKGTPLEGFSAPRSWQLEFMEVVDA------HCLNSVNNPNPEVFKGAISAGRGI 88
W + G + + + + E + H + P + A RG
Sbjct: 11 LLRWEQVGLLQRHYESFHDFLDDAFEHLGFSASWVQHDIGGFLAHGPNSLM--VQAQRGQ 68
Query: 89 GKTTLNAWLVLWLMSTRPGISVICL------ANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
KTT+ A +W + P V+ L AN + L + K L +
Sbjct: 69 AKTTITAAFAVWTLIHNPKARVLILSAGGTQANEISTL-------IVKLLLTMDELECLR 121
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + + +H +L K S C + G +A + A
Sbjct: 122 PDASNGDRTSVEAFDIHYTLKGVDKSPSVACSGITG----NLQGKRADLLIADDIESAKN 177
Query: 203 TPDVINLGILGFL----TERNANRFWIMTSNPRRLSGKF 237
+ + + L T I P+ + +
Sbjct: 178 SATAMMREFIMNLTRDFTSICTEGRIIYLGTPQSMDSIY 216
>gi|330791351|ref|XP_003283757.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum]
gi|325086380|gb|EGC39771.1| hypothetical protein DICPUDRAFT_147464 [Dictyostelium purpureum]
Length = 1580
Score = 40.5 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 44/154 (28%), Gaps = 16/154 (10%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTR-----PGISVIC--LANSETQLK---TTLWAEVSKW 131
+ G GKT A +VL M + P I N+ L +L E S
Sbjct: 1094 VRGPPGTGKTHFLALIVLIFMESYKRLGKPFRIAITSFTHNAIDNLLIRIASLKKEYSTS 1153
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ N F+ Q+ L + +H+ ++S D
Sbjct: 1154 VGQDINFPLFKKQTKLSEDLKLNKIQLFDKKEFEREHFCVGATSWSLSNMD------YEN 1207
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
+I DEAS I L +
Sbjct: 1208 FDLLIIDEASQLSSYIGAIPFSRLNKDTGRVIVC 1241
>gi|153955889|ref|YP_001396654.1| hypothetical protein CKL_3280 [Clostridium kluyveri DSM 555]
gi|219856242|ref|YP_002473364.1| hypothetical protein CKR_2899 [Clostridium kluyveri NBRC 12016]
gi|146348747|gb|EDK35283.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569966|dbj|BAH07950.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 450
Score = 40.5 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 94/284 (33%), Gaps = 36/284 (12%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ +E S +LG L + + I+++NP Y+ F K + K F +
Sbjct: 119 IVWIEECSEVKYEGFKELLGRLRHPSLSLHMILSTNPVSKDNWTYKHFFK-NEKKKTFIL 177
Query: 254 D---------------------TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
D + S+ E + D D+ R+ G+F +
Sbjct: 178 DDEELYKKRIVVRNNTYYHHSLADDNLFLPKSYIEQLEELKTYDIDLYRIARKGRF-GIN 236
Query: 293 IDSFIPLNIIEEALN-REPCPDPYAPL-IMGCDIAEEGGDNTVVVLRRGPVIEHL-FDWS 349
+P + + P+ +G D E N ++ L + L W
Sbjct: 237 GRRVLPQFEARPHYEVLQAIGNIKNPIKRVGFDFGFEDSYNALLRLAVDDKEKILYIYWE 296
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ T+++ + + +++ +I A+ +T Y G+++ R +
Sbjct: 297 YYKNQMTDDRTAIEIAEFKSTQELIRADGAEPKTIKYFNQQGFNIRRAKKFPGSRLQNTK 356
Query: 410 RNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGEL 453
+ +R + IN +++L + V GE+
Sbjct: 357 KVKR------FKKIICSEDCINTVDELKDLT----YAVDKNGEI 390
>gi|195498547|ref|XP_002096570.1| GE25739 [Drosophila yakuba]
gi|194182671|gb|EDW96282.1| GE25739 [Drosophila yakuba]
Length = 1495
Score = 40.1 bits (92), Expect = 0.80, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 62/200 (31%), Gaps = 24/200 (12%)
Query: 16 FDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR--SWQLEFMEVVDAH-CLNSVNN 72
D+ W D+ + + +H E+ +G P + +V H + N
Sbjct: 1 MDVNWIDDDEDLVAALAMHEEQKTEEADGADGHPRPELSDESCDGFDVATGHNWIYPNNL 60
Query: 73 PNPEVFKGAISAG----------RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
P + + + G+GKT + A L+ P ++ +A + +
Sbjct: 61 PLRSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVLMFNFYRWYPKGKIVFMAPTRPLVSQ 120
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE--R 180
++ ++P +Q P P +++ + + + +
Sbjct: 121 ----QIHASQKIMPFPSADTVQLTGQLPRPKRAELWGSK-----RVFFATPQVVHSDMLE 171
Query: 181 PDTFVGHHNTYGMAIINDEA 200
D I+ DEA
Sbjct: 172 TDGGSTFPFESIKLIVVDEA 191
>gi|310792137|gb|EFQ27664.1| Sec63 Brl domain-containing protein [Glomerella graminicola M1.001]
Length = 1974
Score = 40.1 bits (92), Expect = 0.82, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RPG V+ +A L E V W + L +
Sbjct: 1153 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAP-----MKALVRERVKDWGARLARPLGLK 1207
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + II DE
Sbjct: 1208 LVELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1258
>gi|226288385|gb|EEH43897.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb18]
Length = 2011
Score = 40.1 bits (92), Expect = 0.92, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RPG V+ +A L E V W L +
Sbjct: 1163 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAP-----MKALVRERVHDWKRRLTVPMGLK 1217
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + II DE
Sbjct: 1218 LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1268
>gi|295672069|ref|XP_002796581.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb01]
gi|226283561|gb|EEH39127.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb01]
Length = 2012
Score = 40.1 bits (92), Expect = 0.92, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RPG V+ +A L E V W L +
Sbjct: 1163 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAP-----MKALVRERVHDWKRRLTVPMGLK 1217
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + II DE
Sbjct: 1218 LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1268
>gi|213402789|ref|XP_002172167.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275]
gi|212000214|gb|EEB05874.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275]
Length = 1949
Score = 40.1 bits (92), Expect = 0.92, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 22/155 (14%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA--------ISAGRGIGKTTLNAWLVLWLMSTRP 106
Q +E + A + N + F I A G GKT W P
Sbjct: 1125 QNPVLEEICAKRFSFFNAVQSQFFHTVYHTPTNVFIGAPTGSGKTMAAELATWWAFREHP 1184
Query: 107 GISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI- 164
G V+ +A L E + W + L M L+ +P ++ + I
Sbjct: 1185 GSKVVYIAP-----MKALVKERLKDWGARLVEPMHINMIELTGDTSPDSKTIMGADIIIT 1239
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + R + + + +I DE
Sbjct: 1240 TPEKWDGITRNWRTRK-------YVQNVSLVIIDE 1267
>gi|209544598|ref|YP_002276827.1| hypothetical protein Gdia_2467 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209532275|gb|ACI52212.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 491
Score = 40.1 bits (92), Expect = 0.96, Method: Composition-based stats.
Identities = 39/199 (19%), Positives = 67/199 (33%), Gaps = 26/199 (13%)
Query: 87 GIGKTTLNAW-LVLWLMSTRPGISVI------CLANSETQLKTTLWAEVSKWLSLLPNKH 139
G GK++ W +VL + PG + + NS QL+ T V +W +
Sbjct: 32 GSGKSSGCVWEMVLRGLKQAPGPDGVRRSRWAVIRNSYRQLEDTTIRTVHQWFPPMQFGR 91
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
W P+ + + D K + +RPD + +E
Sbjct: 92 W--------KPSEHSYTINRLAAQGDEKPAEIELLFRALDRPDQVGNLLSLELTGAWINE 143
Query: 200 ASGTPDVINLGILGFL----TERNANRFW---IMTSNPRRLSGKFYEIF----NKPLDDW 248
A P + + G + +R+ W IM +NP ++Y+ F + +
Sbjct: 144 AREVPWAVIEAVQGRVGRYPAKRDGGATWSGIIMDTNPPDAESEWYKFFEEKDHTDAVEA 203
Query: 249 KRFQIDTRTVEGIDPSFHE 267
I TVE F +
Sbjct: 204 IAQVIPGMTVERYARIFKQ 222
>gi|329945026|ref|ZP_08292976.1| hypothetical protein HMPREF9056_00859 [Actinomyces sp. oral taxon
170 str. F0386]
gi|328529487|gb|EGF56391.1| hypothetical protein HMPREF9056_00859 [Actinomyces sp. oral taxon
170 str. F0386]
Length = 370
Score = 40.1 bits (92), Expect = 0.98, Method: Composition-based stats.
Identities = 32/175 (18%), Positives = 52/175 (29%), Gaps = 12/175 (6%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119
V++ + + P I+ RG+GKT L S R V+ +
Sbjct: 21 RVIEEFLESLDDGPGAPGLLELITGARGVGKTV---MLTALGDSARERGWVVVDETAREG 77
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
L L E ++ LS L K + SLSL + R ++
Sbjct: 78 LMDRLATEFTRQLSQLAGKERSRLTSLSLSTPLGGGSATLEHAPAPEPSWRQKARALTQW 137
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---LTERNANRFWIMTSNPR 231
+ G + + DE P + L A +M P+
Sbjct: 138 LAEHGTG------LLLTIDEVHAIPREELRALSAEVQHLIREGAPIGLLMAGLPK 186
>gi|302422104|ref|XP_003008882.1| DEAD/DEAH box helicase [Verticillium albo-atrum VaMs.102]
gi|261352028|gb|EEY14456.1| DEAD/DEAH box helicase [Verticillium albo-atrum VaMs.102]
Length = 1801
Score = 39.7 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 57/353 (16%), Positives = 108/353 (30%), Gaps = 53/353 (15%)
Query: 21 SDEIKLSFSNFVL-HFFPWGEKGTPLEGFSA----PRSWQLEFMEVVDAHCLNSVNNPNP 75
I L+ + F L H P+ E+ + P +WQ + ++ +DA+ V P
Sbjct: 719 DLAIPLNLTEFQLEHSGPYMERNFDSKPDDRVTFDPDAWQRKVLDTIDANNSLMVVAPTS 778
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
GKT ++ + + ++ ++ +A ++ + AEV+ S
Sbjct: 779 ------------AGKTFISFYAMKKILQANDDDVLVYVAPTKALVNQIA-AEVAARYSKS 825
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS-EERPDTFVGHHNTYGMA 194
+ + ++ + L TM S +RP +
Sbjct: 826 YTREGKSVWAIHTRDYRVNNPTGCQVLVTVPHVLQTMLLAPSNSDRPSAWA----RRVKR 881
Query: 195 IINDEASGTPDV----INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
II DE + +L A I S +G+F++ W
Sbjct: 882 IIFDEVHCIGQAEDGIVWEQLLLL-----APCPIIALSATVGNAGEFHD--------W-- 926
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF-----IPLNIIEEA 305
V + ++ SD+ R V Q +D +P+ I++
Sbjct: 927 -----LAVSQAQKGYKMELVVHNARYSDL-RKFVYCPPKQLKMDVLAKQDQLPIPGIDQG 980
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNN 358
R P P+ DI D+ + R + D +T
Sbjct: 981 EERNPRFFFTHPIAALLDINRGSLDDVSLEPRDCWTLWKCMDKHQTTDFPVAK 1033
>gi|85702762|ref|ZP_01033866.1| Putative large terminase [Roseovarius sp. 217]
gi|85671690|gb|EAQ26547.1| Putative large terminase [Roseovarius sp. 217]
Length = 419
Score = 39.7 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 43/270 (15%), Positives = 82/270 (30%), Gaps = 43/270 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGIS---------VICLANSETQLKTT-LWAEVSKW 131
I GRG GKT A W+ + G + + + Q++ ++ E S
Sbjct: 27 IMGGRGAGKTRAGA---EWVRAQVEGSRPLDEGRCKRIALVGETIDQVREVMVFGE-SGI 82
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
++ P + Q+ + + YS P+ G
Sbjct: 83 MACSPPDRRPDWQATR---------------KRLIWPNGAVAQAYSAHDPEALRGPQFDG 127
Query: 192 GMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
DE + + L +A R + + R G +I P
Sbjct: 128 A---WVDELAKWKRARETWDMLQFGLRLGDAPR--VCVTTTPRNVGVLKDIVAVPSTV-V 181
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+ SF + + ARY + + R E+ G + D+ ++E A R
Sbjct: 182 TSAPTEANRAYLAESFLDEVRARY-AGTRLGRQELDGLLIDEAEDALWTPAMLEAA--RV 238
Query: 310 PCPDPYAPLIMGCDI---AEEGGDNTVVVL 336
+ +++ D G D +++
Sbjct: 239 ESLPEFDRVVVAVDPPVTGHAGSDECGIIM 268
>gi|83310928|ref|YP_421192.1| protein-tyrosine-phosphatase [Magnetospirillum magneticum AMB-1]
gi|82945769|dbj|BAE50633.1| Protein-tyrosine-phosphatase [Magnetospirillum magneticum AMB-1]
Length = 152
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 16/155 (10%)
Query: 215 LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
+TE N + T N R I + W+ + +R V ++P E ++A G
Sbjct: 1 MTESTINVLVLCTGNSARSVLGEALINHLGGAKWRAYSAGSRPVGRVNPLSLE-VLAEKG 59
Query: 275 LDSDVTRVEVCGQFPQQDI-DSFIPLNIIEEALNREPCPDPYAP--LIMGC-DIAEEGGD 330
L + R + +F D + + + + A P P L MG D A+
Sbjct: 60 LPTAGYRSKSWDEFAAADAPRMDLVITVCDNAAGEVCPVWPGHPSKLHMGFPDPADA--- 116
Query: 331 NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+G E L ++ K K+ L++
Sbjct: 117 -------KGSHEEQLAEFRKVYAMIEA-KVRRLIQ 143
>gi|288554856|ref|YP_003426791.1| Tex transcription access, protein (S1 RNA binding) [Bacillus
pseudofirmus OF4]
gi|288546016|gb|ADC49899.1| Tex transcription access, protein (S1 RNA binding) [Bacillus
pseudofirmus OF4]
Length = 726
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 12/144 (8%)
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
+ D+ E + + +G ++ + R E+ + + + I + E
Sbjct: 255 KRYMSRAGDSPAAEYVKLAIQDGYKRL--IEPSIER-EIRNELTAKAEEQAIHIF-SENL 310
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW---SKTDLRTTNNKISG 362
N P +++G D A G VV G V++ + + ++ K+
Sbjct: 311 RNLLLQPPIKDKVVLGVDPAYRTGCKLAVVDGTGKVLDIGVVYPTPPRNEVEKAAAKVKQ 370
Query: 363 LVEKYRPDAIIIDANNTGARTCDY 386
LV++++ + I I G T
Sbjct: 371 LVKEHKVEMIAI-----GNGTASR 389
>gi|289167314|ref|YP_003445583.1| terminase large subunit [Streptococcus mitis B6]
gi|288906881|emb|CBJ21715.1| terminase large subunit [Streptococcus mitis B6]
Length = 418
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 45/353 (12%), Positives = 104/353 (29%), Gaps = 42/353 (11%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+P++ GRG GK++ ++ + R ++ +C+ ++ L+ +++ ++ +S
Sbjct: 22 DPKILHVVEKGGRGSGKSSDLGHTII-QLIMRYPVNAVCIRKTDNTLEQSVYEQLKWAIS 80
Query: 134 LLPNKHWFEMQ--------SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
H F++ + + + + +
Sbjct: 81 EQGVSHLFKINKSPLKITYIPRGNYIIFRGAQDPERIKSLKDSRFPFAIGW----IEELA 136
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIF 241
DE + + G L + + + NP + + YE
Sbjct: 137 EFKTE-------DEVKTITNSLLRGEL----DDGLFYKFFYSYNPPKRKQSWVNKKYESV 185
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+P + I +F E A R E G+ + P
Sbjct: 186 IQP-PNTHVHHSTYLDNPYISQAFIEEAEATRERSEKRYRWEYLGEAIGSGVA---PFEN 241
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV---VLRRGPVIEHLFDWSKT--DLRTT 356
+ + + + G D V ++ VI + + R
Sbjct: 242 LVFRKITDEEIARFDNIRQGNDFGYANDPLAFVRWHYDKKKRVIYAIDEIYGVKISNREL 301
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+I + Y+ I D+ ++ D L++ ++ V G K+ D
Sbjct: 302 AERIRE--KGYQSQMITCDS--AEPKSIDELKLQ-LNIPLVQGAKKGPDSREY 349
>gi|269986940|gb|EEZ93216.1| type III restriction protein res subunit [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 508
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 25/60 (41%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
F E ++ + + + G+GKT ++A L + + P V+ LA ++
Sbjct: 4 FKEEIENREYQTKIFETAKTGNTLVVLPTGLGKTIISAMLANYRLEKYPSSKVLFLAPTK 63
>gi|302412431|ref|XP_003004048.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102]
gi|261356624|gb|EEY19052.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102]
Length = 709
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RPG V+ +A L E V W + L +
Sbjct: 279 SPTGSGKTVAAELAMWWAFKERPGSKVVYIAP-----MKALVRERVKDWGARLAKPLGLK 333
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + II DE
Sbjct: 334 LVELTGDNTPDTRTIKDADVIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 384
>gi|188580687|ref|YP_001924132.1| hypothetical protein Mpop_1430 [Methylobacterium populi BJ001]
gi|179344185|gb|ACB79597.1| protein of unknown function DUF264 [Methylobacterium populi BJ001]
Length = 421
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 61/357 (17%), Positives = 108/357 (30%), Gaps = 52/357 (14%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNA-WLVLWLMSTRPGISVICL 113
L +E H P P + A+ GRG GKT A W+ +
Sbjct: 9 LRLLEADWLHRARHDQLPPPGDWTTWAVIGGRGSGKTRTGAEWV---RGLAHGDP--VFT 63
Query: 114 ANSETQLKTT--LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A + ++ +A+V + P+ + L P W G
Sbjct: 64 AEAVGRIALVGETFADVRDVMIEGPSG-LLALPRLGGPPPVWQPSRRRVMFGN-----GA 117
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS-NP 230
+ +S E PD+ G A +DE + + +F + +P
Sbjct: 118 VALAFSAEEPDSLRG---PQFGAAWSDEVAK-----WREAEAA---YDMIQFGLRLGAHP 166
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTV----------EGIDPSFHEGIIARYGLDSDVT 280
R L +P+ +R D RTV + + P F E ++ RY + +
Sbjct: 167 RGLVT----TTPRPVPLIRRLLADPRTVVTRSRTADNAQNLAPRFLEEVVGRY-AGTRIG 221
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNT----- 332
R E+ G+ + D+ + IE R P + + D + G D
Sbjct: 222 RQELDGELIEDRPDALWTRDGIER--TRIHAAPPLQRIAVAVDPPASSRAGADACGIVAA 279
Query: 333 VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + + L + + D ++ + N G L
Sbjct: 280 GIAADGTAYVLADATLERAAPAAWAQGALALYHRLKADVLVAEVNQGGEMVVAVLAE 336
>gi|15618661|ref|NP_224947.1| exodeoxyribonuclease V, Alpha [Chlamydophila pneumoniae CWL029]
gi|4377059|gb|AAD18890.1| Exodeoxyribonuclease V, Alpha [Chlamydophila pneumoniae CWL029]
Length = 493
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 41/212 (19%), Positives = 71/212 (33%), Gaps = 28/212 (13%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE---T 118
+ + N + N + +S G G GKT L A L+L L+ +P + + ++ + +
Sbjct: 132 ILSEEQNFIFNKITQGCFSIVSGGPGTGKTFLAAQLILSLVKQQPKLRIAIVSPTGKATS 191
Query: 119 QLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
++ L + + L+ H F + + L +D T YS
Sbjct: 192 HIRQILMKYNIFDDMVLMQTVHHFLQEY------AYRRYNSIDVLLVDEGSMVTFDLLYS 245
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP-RRLSGK 236
+ G+ + T +I LG L I NP + L G
Sbjct: 246 LVQT--LQGYEKDKKLY--------TSSLIILGDTNQL-----PPIGIGVGNPLQDLIGY 290
Query: 237 FYEI--FNKPLDDWKRFQIDTRTVEGIDPSFH 266
F+E F K K +D T +
Sbjct: 291 FHENTFFLKTSHRAKTGVVDQLTQSVLRGEMI 322
>gi|15836285|ref|NP_300809.1| exodeoxyribonuclease V, alpha [Chlamydophila pneumoniae J138]
gi|16752288|ref|NP_445657.1| exodeoxyribonuclease V, alpha subunit, putative [Chlamydophila
pneumoniae AR39]
gi|33242111|ref|NP_877052.1| exonuclease V alpha-subunit [Chlamydophila pneumoniae TW-183]
gi|7190033|gb|AAF38887.1| exodeoxyribonuclease V, alpha subunit, putative [Chlamydophila
pneumoniae AR39]
gi|8979125|dbj|BAA98960.1| exodeoxyribonuclease V, alpha [Chlamydophila pneumoniae J138]
gi|33236621|gb|AAP98709.1| exonuclease V alpha-subunit [Chlamydophila pneumoniae TW-183]
Length = 493
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 41/212 (19%), Positives = 71/212 (33%), Gaps = 28/212 (13%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE---T 118
+ + N + N + +S G G GKT L A L+L L+ +P + + ++ + +
Sbjct: 132 ILSEEQNFIFNKITQGCFSIVSGGPGTGKTFLAAQLILSLVKQQPKLRIAIVSPTGKATS 191
Query: 119 QLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
++ L + + L+ H F + + L +D T YS
Sbjct: 192 HIRQILMKYNIFDDMVLMQTVHHFLQEY------AYRRYNSIDVLLVDEGSMVTFDLLYS 245
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP-RRLSGK 236
+ G+ + T +I LG L I NP + L G
Sbjct: 246 LVQT--LQGYEKDKKLY--------TSSLIILGDTNQL-----PPIGIGVGNPLQDLIGY 290
Query: 237 FYEI--FNKPLDDWKRFQIDTRTVEGIDPSFH 266
F+E F K K +D T +
Sbjct: 291 FHENTFFLKTSHRAKTGVVDQLTQSVLRGEMI 322
>gi|226945807|ref|YP_002800880.1| phage P2 terminase ATPase subunit, gpP-like protein [Azotobacter
vinelandii DJ]
gi|226720734|gb|ACO79905.1| Phage P2 terminase ATPase subunit, gpP-like protein [Azotobacter
vinelandii DJ]
Length = 585
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 50/162 (30%), Gaps = 22/162 (13%)
Query: 246 DDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL----- 299
W++ I G D E + Y +++ + +F S PL
Sbjct: 326 KIWRQIVTILDAERRGCDLFDLEELRFEY--NAEQFANLLMCEFVDDGA-SIFPLAMLQP 382
Query: 300 ----NIIEEALNREP---CPDPYAPLIMGCDIAEEGGDNTVVV----LRRGPVIEHL--F 346
+ +E A + +P P + +G D AE G +VV L G L
Sbjct: 383 CQVDSWVEWAEDFKPFAARPFGDRQVWVGYDPAETGDSAGLVVVAPPLVPGGKFRVLERH 442
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ D I + +Y I +D G +
Sbjct: 443 QFRGMDFAAQAEFIRQVTRRYWVTYIGLDTTGMGTGVAQLVR 484
>gi|213423446|ref|ZP_03356429.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 72
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
I W D R + L E+Y I ID+ G + ++
Sbjct: 10 RILERHQWRGMDFRAQADANKKLTEQYNVTYIGIDSTGVGHGVYENVK 57
>gi|209964492|ref|YP_002297407.1| EAL domain proteni [Rhodospirillum centenum SW]
gi|209957958|gb|ACI98594.1| EAL domain proteni [Rhodospirillum centenum SW]
Length = 587
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL 363
A + A L + D EG V + + + + + S+ D ++
Sbjct: 82 AATFKRLVGTAAAKLFLNVDPRLEGAVPLVTAIGQRYGVPIVHEISELDTTAVGERLEAA 141
Query: 364 VEKYRP--DAIIIDANNTGAR 382
VE+YR I +D G
Sbjct: 142 VEQYRRRDIGIALDDFGVGFG 162
>gi|213027809|ref|ZP_03342256.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 141
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
D R + I L E+Y I ID+ G + ++
Sbjct: 1 RGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVK 40
>gi|54025903|ref|YP_120145.1| putative phage terminase [Nocardia farcinica IFM 10152]
gi|54017411|dbj|BAD58781.1| putative phage terminase [Nocardia farcinica IFM 10152]
Length = 436
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 9/171 (5%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG----KFYEIFNKPLDDWK 249
+ DEA+ P+ + L+ A + T+NP F + +
Sbjct: 125 LAMVDEATLLPENFWTQLGARLSVPGAK--LLATTNPDNPQHYLKVNFIDRAGERGMRLC 182
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+ G+D + + A + GQ+ D + + + +
Sbjct: 183 AWDFTLDDNPGLDDEYVASLKAE--NQGLFYLRNILGQWVAADGAVYDCYDPAKHLVKWS 240
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTV-VVLRRGPVIEHLFDWSKTDLRTTNNK 359
P+ + +G D V + L V+ + +W
Sbjct: 241 ELPEMQFYVGVGVDHGTTNPTAAVLIGLGADNVLYAVDEWRYAPSNKEARW 291
>gi|227496997|ref|ZP_03927248.1| phage Terminase [Actinomyces urogenitalis DSM 15434]
gi|226833491|gb|EEH65874.1| phage Terminase [Actinomyces urogenitalis DSM 15434]
Length = 480
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 35/246 (14%), Positives = 69/246 (28%), Gaps = 25/246 (10%)
Query: 194 AIINDEASGTPDVINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFNKPL------- 245
I+ DEA D + AN I T P E+F +
Sbjct: 169 IIVLDEAQDLTDEALEALRSTNAAGPQANPQIIYTGTPPSPKNDG-EVFTRFRSGALSGT 227
Query: 246 ------DDWKRFQ----IDTRTVEGIDPSFHEGIIARYGLD------SDVTRVEVCGQFP 289
+W D T+ +P++ + A+ D + E G +
Sbjct: 228 TASTCWHEWSAAPDADLDDETTIAQANPAYQIRLSAKTVADEREDISEEGFARERLGMWD 287
Query: 290 QQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS 349
+ + I + + L + G V R+ +
Sbjct: 288 EVSTSAVIDQATWLRCADMASQVNDRLALAVDVQPDRTSGSVAVAGQRKDGRWHIEVIDN 347
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ ++ +++G+ + R ++ID A + L+ G V + A
Sbjct: 348 RNNVGWILQRVAGIWARQRIRTVVIDRRGPAASLIEPLQQKGIKVTTTDAAQMAASCGAF 407
Query: 410 RNRRTE 415
+ E
Sbjct: 408 YDAVME 413
>gi|125552219|gb|EAY97928.1| hypothetical protein OsI_19844 [Oryza sativa Indica Group]
Length = 1367
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 15/92 (16%)
Query: 55 QLEFMEVVDAHCLNSV-NNPNPEVFKGAISAG----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + + + N K + G G GKT L + M P
Sbjct: 782 QREAFEFMWTNLVGDIRLNEIKHGAKPDVVGGCVICHAPGTGKTRLAIVFIQTYMKVFPD 841
Query: 108 ISVICLANSETQLKTTLWA---EVSKWLSLLP 136
+ +A + L+A E KW +P
Sbjct: 842 CRPVIIAP-----RGMLFAWEQEFKKWNVNVP 868
>gi|269302541|gb|ACZ32641.1| putative exodeoxyribonuclease V, alpha subunit [Chlamydophila
pneumoniae LPCoLN]
Length = 493
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 41/212 (19%), Positives = 71/212 (33%), Gaps = 28/212 (13%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE---T 118
+ + N + N + +S G G GKT L A L+L L+ +P + + ++ + +
Sbjct: 132 ILSEEQNFIFNKITQGCFSIVSGGPGTGKTFLAAQLILSLVKQQPKLRIAIVSPTGKATS 191
Query: 119 QLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
++ L + + L+ H F + + L +D T YS
Sbjct: 192 HIRQILMKYNIFDDMVLMQTVHHFLQEY------AYRRYNSIDVLLVDEGSMVTFDLLYS 245
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP-RRLSGK 236
+ G+ + T +I LG L I NP + L G
Sbjct: 246 LVQT--LQGYEKDKKLY--------TSSLIILGDTNQL-----PPIGIGVGNPLQDLIGY 290
Query: 237 FYEI--FNKPLDDWKRFQIDTRTVEGIDPSFH 266
F+E F K K +D T +
Sbjct: 291 FHENTFFLKTSHRAKTGAVDQLTQSVLRGEMI 322
>gi|222631484|gb|EEE63616.1| hypothetical protein OsJ_18433 [Oryza sativa Japonica Group]
Length = 1364
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 15/92 (16%)
Query: 55 QLEFMEVVDAHCLNSV-NNPNPEVFKGAISAG----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + + + N K + G G GKT L + M P
Sbjct: 779 QREAFEFMWTNLVGDIRLNEIKHGAKPDVVGGCVICHAPGTGKTRLAIVFIQTYMKVFPD 838
Query: 108 ISVICLANSETQLKTTLWA---EVSKWLSLLP 136
+ +A + L+A E KW +P
Sbjct: 839 CRPVIIAP-----RGMLFAWEQEFKKWNVNVP 865
>gi|300922509|ref|ZP_07138621.1| phage terminase large subunit [Escherichia coli MS 182-1]
gi|300421167|gb|EFK04478.1| phage terminase large subunit [Escherichia coli MS 182-1]
Length = 240
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 29/243 (11%), Positives = 69/243 (28%), Gaps = 22/243 (9%)
Query: 67 LNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+N + P E + + GRG GK+ W + ++ A ++
Sbjct: 4 INPIFEPFIEAHRYKVAKGGRGSGKS--------WAI-----ARLLVEAARRQPVRILCA 50
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ +S + + + A + + + + + +
Sbjct: 51 RELQNSISDSVIRLLEDTIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLE 110
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KP 244
G +EA ++ + + + W+ NP+ + Y+ F P
Sbjct: 111 GID-----ICWVEEAEAVTKESWDILIPTIRKPFSE-IWVSF-NPKNILDDTYQRFVVNP 163
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
DD ++ + + + R G+ + I +E
Sbjct: 164 PDDICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEA 223
Query: 305 ALN 307
A +
Sbjct: 224 ATD 226
>gi|293401139|ref|ZP_06645283.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305265|gb|EFE46510.1| SNF2 domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 447
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 54/160 (33%), Gaps = 30/160 (18%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT--TLNAWLVLWLMSTRPG 107
+P ++Q ++ ++ H + +V G+GKT L A L S
Sbjct: 4 SPHNYQSYAIDYIETHPVAAVLLDM------------GLGKTVIFLTAIADLLFDS-FEA 50
Query: 108 ISVICLANSETQLKTTLWA-EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
++ +A + W E+SKW L + + ++ A + + ++
Sbjct: 51 HRILVVAPLR--VARDTWPAEISKWQHLKHLTYAVAVGTVKERKAALSAGADITIINREN 108
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
+ G+ Y M II DE S +
Sbjct: 109 LGWLIDS-----------SGYEFDYDMVII-DELSSFKNH 136
>gi|227499654|ref|ZP_03929757.1| PbsX family phage terminase, large subunit [Anaerococcus tetradius
ATCC 35098]
gi|227218251|gb|EEI83510.1| PbsX family phage terminase, large subunit [Anaerococcus tetradius
ATCC 35098]
Length = 439
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 22/184 (11%), Positives = 45/184 (24%), Gaps = 36/184 (19%)
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK----------PLDDWKRFQID 254
D I + FW + NP + Y +
Sbjct: 149 DSIKEAFNRTAAAKRRKFFWDL--NPSSPNHFIYADHIDKYQNMIDEGIDFGGYNYKHFT 206
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG-----------QFPQQDIDSFIPLNIIE 303
I + I +Y +S + ++ G QF D I
Sbjct: 207 IDDNINISDQRKKEIKLQYDPNSVWYKRDILGLRVVAEGLIYKQFADNPDDYLI------ 260
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVV--LRRGPVIEHLFDWSKTDLRTTNNKIS 361
+ P + +G D + + + RG + + + + +
Sbjct: 261 -----KEKPHELQMIQIGVDFGGNNSKHAFICCGISRGFKKVYALRSERLEPDKPTDLYN 315
Query: 362 GLVE 365
L++
Sbjct: 316 QLID 319
>gi|170764163|ref|ZP_02633320.2| phage terminase, large subunit, pbsx family [Clostridium
perfringens E str. JGS1987]
gi|170661287|gb|EDT13970.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens E str. JGS1987]
Length = 441
Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 23/189 (12%), Positives = 51/189 (26%), Gaps = 33/189 (17%)
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----------WKRFQI 253
PD I + FW + NP + Y+ + + +
Sbjct: 145 PDSIKEAFNRTIAAHKRKVFWDL--NPDNPNAFIYKDYIDNYKSKYENGELKGGYNYYHF 202
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
I E I ++Y +S + ++ G+ + +I P
Sbjct: 203 TIDDNINISDERKEEIKSQYDKNSIWYQRDILGKR-------CVAEGLIYRRFANNPNSY 255
Query: 314 PYAP--------LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+++G D G + + F + K + ++ ++
Sbjct: 256 RAEESDVSNLMKIVIGVDFGGTGSGHAFIA------SAITFGYKKVIILSSERHFGDDID 309
Query: 366 KYRPDAIII 374
+ I I
Sbjct: 310 SEKLGKIFI 318
>gi|284018161|sp|A3GH78|MPH1_PICST RecName: Full=ATP-dependent DNA helicase MPH1
Length = 1050
Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE----TQLK 121
++ G+GKT + + ++L + P +I +A ++ Q+K
Sbjct: 106 VALPTGLGKTFIASTVMLNFLRWFPESKMIFVAPTKPLVAQQIK 149
>gi|121602586|ref|YP_988560.1| PBSX family phage terminase large subunit [Bartonella bacilliformis
KC583]
gi|120614763|gb|ABM45364.1| putative phage terminase, large subunit, PBSX family [Bartonella
bacilliformis KC583]
Length = 402
Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 65/194 (33%), Gaps = 11/194 (5%)
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNAN--RFWIMTSNPRRLSGKFYEIFN-KPLDD 247
+ DEA + ++ L E + +T NP R + + F +
Sbjct: 83 RILLCWVDEAEPVTETAWQTLIPTLREEGQDWHSELWVTWNPLRENAPVEKRFRLTKDPN 142
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIEE 304
K +I+ R + +A + G + Q ++ + L+ +E
Sbjct: 143 IKGVEINWRDNPQFPDKLNRDRLADLHQRPEQYGHIWEGDYLQAVQGAYYQKLLLDAEQE 202
Query: 305 ALNREPCPDPYAPLIMGCDIAEEG--GDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKI 360
DP + + DI G D T + + + G I L D+ + + + I
Sbjct: 203 GRIAHVSRDPLIQIKIFWDIGGTGAKADATALWVAQFIGREIRIL-DYYEAQGQPLSEHI 261
Query: 361 SGLVEKYRPDAIII 374
+ + A+++
Sbjct: 262 GWICHRGYDKALMV 275
>gi|328870919|gb|EGG19291.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
Length = 2224
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 42/288 (14%), Positives = 80/288 (27%), Gaps = 38/288 (13%)
Query: 66 CLNSVNNPNPEVFKGA-----ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET-- 118
N V ++A GKT VL + P + +A E+
Sbjct: 1386 YFNPVQTQVFSSLYTTDENVFVAAPANTGKTVCAELAVLRTLINNPEARCVYIAPVESMV 1445
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+++ WA K+ +++ + S ++ + ++ + + R + +
Sbjct: 1446 TVRSRDWAY--KFGQKFGKVSVLTGDAVTDNKILEASRIIVTT----AERWDILSRKWRQ 1499
Query: 179 ERPDTFVGHHNTYGMAIINDE----ASGTPDVINLGILGFL----TERNANRFWIMTSNP 230
+ I DE SG +L + T+ + +I S+P
Sbjct: 1500 KNSRV------QSVSLFIVDELQMIGSGESGSTMEIVLSRMRYIATQTGSPIRFIGLSSP 1553
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ + L +W T D E I G D +
Sbjct: 1554 VANA--------RDLAEWMGATPATMFNFHPDVRPVEMEIQMQGFDYPNFQERQMAM--- 1602
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
+ ++ A P A M DI + RR
Sbjct: 1603 TKPALYAVSHMDRTAQTLVYVPTRKAARQMAADIILFVDSEDDMNTRR 1650
>gi|308198038|ref|XP_001387028.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149389001|gb|EAZ63005.2| predicted protein [Pichia stipitis CBS 6054]
Length = 941
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE----TQLK 121
++ G+GKT + + ++L + P +I +A ++ Q+K
Sbjct: 42 VALPTGLGKTFIASTVMLNFLRWFPESKMIFVAPTKPLVAQQIK 85
>gi|220915119|ref|YP_002490424.1| hypothetical protein Mnod_7767 [Methylobacterium nodulans ORS 2060]
gi|219952973|gb|ACL63358.1| hypothetical protein Mnod_7767 [Methylobacterium nodulans ORS 2060]
Length = 846
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 67/215 (31%), Gaps = 36/215 (16%)
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
L+A + WL+ + + + + P S + + S ERP+
Sbjct: 513 LFAWLMNWLAHAAQRPHEKPGTAPIFKGPQGS--GKTTFTNLLRAIFHPAHVVSAERPEA 570
Query: 184 FVGHHNTYG---MAIINDEASGTPDV-INLGILGFLTERNANR--------------FWI 225
+G HN + + ++ DEA D N + +T+ ++
Sbjct: 571 LLGKHNAHLREALFVMADEAVFAGDPAANNRLKAMVTDATLTIEPKGIDAVSVPSFHRFV 630
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
MTSN + + W F + V + ++ + A ++ R +
Sbjct: 631 MTSNEDHVIRAEADA-----RRWAVFDVSGEQVGNV--AYFRELYAVLKPETPEVRAFLR 683
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
+ I E A+ R P I+
Sbjct: 684 ---------DLAVMEIDEAAVRRAPTTSALVGQIV 709
>gi|158318502|ref|YP_001511010.1| helicase domain-containing protein [Frankia sp. EAN1pec]
gi|158113907|gb|ABW16104.1| helicase domain protein [Frankia sp. EAN1pec]
Length = 1143
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 5/136 (3%)
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ +A+ KT + E+ +L + + +L + W + +L D+ Y
Sbjct: 273 GVIIADEVGLGKTYIAGELLHEAVILNRQKALVVAPATLRDSTWKPFLRETNLPADTVSY 332
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---LTERNANRFWIM 226
+ R H +I DEA + LT + R ++
Sbjct: 333 EELTRGMPAAGQQGAALQHPDAYALVIVDEAHALRSLGTQRAEAMRLLLTGKVPKRLVLL 392
Query: 227 TSNPRRLSGKFYEIFN 242
T+ P S Y+++N
Sbjct: 393 TATPVNNS--LYDLYN 406
>gi|111184763|gb|ABH08471.1| putative terminase ATPase subunit [Human herpesvirus 3]
gi|157965750|gb|ABW06896.1| DNA packaging protein [Human herpesvirus 3]
Length = 743
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 28/155 (18%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT L+ +M+T GI V A + K + + +
Sbjct: 268 GKTWFLVPLIALVMATFRGIKVGYTA------------HIRKATEPV-------FEGIKS 308
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM------AIINDEASG 202
W+ + +S +S +YS F HNT G+ + DEA+
Sbjct: 309 RLEQWFGANYVDHVKGESITFSFTDGSYSTAV---FASSHNTNGIRGQDFNLLFVDEANF 365
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
I+GFL + N ++ ++N + S F
Sbjct: 366 IRPDAVQTIVGFLNQTNCKIIFVSSTNTGKASTSF 400
>gi|83721852|emb|CAI44887.1| putative terminase ATPase subunit [Human herpesvirus 3]
gi|94481989|gb|ABF21689.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482063|gb|ABF21762.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482137|gb|ABF21835.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|116489977|gb|ABJ98890.1| ORF45/42 [Human herpesvirus 3]
Length = 747
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 28/155 (18%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT L+ +M+T GI V A + K + + +
Sbjct: 272 GKTWFLVPLIALVMATFRGIKVGYTA------------HIRKATEPV-------FEGIKS 312
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM------AIINDEASG 202
W+ + +S +S +YS F HNT G+ + DEA+
Sbjct: 313 RLEQWFGANYVDHVKGESITFSFTDGSYSTAV---FASSHNTNGIRGQDFNLLFVDEANF 369
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
I+GFL + N ++ ++N + S F
Sbjct: 370 IRPDAVQTIVGFLNQTNCKIIFVSSTNTGKASTSF 404
>gi|9625919|ref|NP_040165.1| DNA packaging terminase subunit 1 [Human herpesvirus 3]
gi|139650|sp|P09294|TRM3_VZVD RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein 45; AltName: Full=Terminase
large subunit; Contains: RecName: Full=Gene 42 protein
gi|5869808|emb|CAB55553.1| putative ATPase subunit of terminase [Human herpesvirus 3 strain
Dumas]
gi|46981453|gb|AAT07724.1| DNA packaging protein [Human herpesvirus 3]
gi|46981524|gb|AAT07800.1| DNA packaging protein [Human herpesvirus 3]
gi|94481841|gb|ABF21543.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94481915|gb|ABF21616.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482211|gb|ABF21908.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482285|gb|ABF21981.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482359|gb|ABF22054.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482433|gb|ABF22127.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482507|gb|ABF22200.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482581|gb|ABF22273.1| putative ATPase subunit of terminase [Human herpesvirus 3]
Length = 747
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 28/155 (18%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKT L+ +M+T GI V A + K + + +
Sbjct: 272 GKTWFLVPLIALVMATFRGIKVGYTA------------HIRKATEPV-------FEGIKS 312
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM------AIINDEASG 202
W+ + +S +S +YS F HNT G+ + DEA+
Sbjct: 313 RLEQWFGANYVDHVKGESITFSFTDGSYSTAV---FASSHNTNGIRGQDFNLLFVDEANF 369
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
I+GFL + N ++ ++N + S F
Sbjct: 370 IRPDAVQTIVGFLNQTNCKIIFVSSTNTGKASTSF 404
>gi|56692599|ref|YP_164067.1| large terminase subunit [Pseudomonas phage B3]
gi|33338625|gb|AAQ13949.1|AF232233_31 large terminase subunit [Pseudomonas phage B3]
Length = 486
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 7/139 (5%)
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-- 314
++G+D + + I D + + E P D +F+ ++I A +
Sbjct: 221 EIQGMDEAQYFDFIRAGCADEESFQQEYMCN-PADDDVAFLEYDLIASAEYPQTANWQQP 279
Query: 315 -YAPLIMGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
L G DI + D TV+ + G V+ ++R + + R +
Sbjct: 280 EGGRLFAGVDIGRK-KDLTVLWILELLGDVLYTRHVERLQNMRKSAQEAILWPWFQRCER 338
Query: 372 IIIDANNTGARTCDYLEML 390
I IDA G D +
Sbjct: 339 ICIDATGLGIGWADDAQDQ 357
>gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
Length = 416
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 68/237 (28%), Gaps = 34/237 (14%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
GFS P Q E + + SA G GKT A L + P
Sbjct: 22 GFSRPTQVQAEAI------------PQALDGRDVLASAPTGTGKTAAFAIPALQYLLDFP 69
Query: 107 -----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
++ L + AE ++ L+ + F + + ++D+L +
Sbjct: 70 RRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQE--HADILATT 125
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
I + +I DEA D+ + L+
Sbjct: 126 QDI------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRW 179
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
R + + L G+ E F L ID P I+++ +D
Sbjct: 180 RKQTLLFSAT-LEGRGVEGFTADL-LKNPAHIDAE-----PPRRERKKISQWYHRAD 229
>gi|159482689|ref|XP_001699400.1| predicted protein [Chlamydomonas reinhardtii]
gi|158272851|gb|EDO98646.1| predicted protein [Chlamydomonas reinhardtii]
Length = 231
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R+W + V + V + G+GKT + A ++L P ++
Sbjct: 7 RTWLYPTDQEVREYQFRMV--RGALFANTLVCLPTGLGKTLIAAVVILNFYRWFPDGKLV 64
Query: 112 CLANSETQLK 121
A ++ ++
Sbjct: 65 FTAPTKPLVE 74
>gi|75763594|ref|ZP_00743293.1| Stage V sporulation protein AA [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74488924|gb|EAO52441.1| Stage V sporulation protein AA [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 206
Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
I + P + +G D+A+ GD++VV L + ++ + KT + K
Sbjct: 3 QTIYIKMRNRLKVSPTYEVKLG-DVAQLAGDSSVVELLQNEIVYKITAHDKTHVVIDVMK 61
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCD 385
+ ++++ + + I+ +G D
Sbjct: 62 VIEIIQQ-KASHVQINLLGSGQTLVD 86
>gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
Length = 416
Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 68/237 (28%), Gaps = 34/237 (14%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
GFS P Q E + + SA G GKT A L + P
Sbjct: 22 GFSRPTQVQAEAI------------PQALDGRDVLASAPTGTGKTAAFAIPALQYLLDFP 69
Query: 107 -----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
++ L + AE ++ L+ + F + + ++D+L +
Sbjct: 70 RRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQE--HADILATT 125
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
I + +I DEA D+ + L+
Sbjct: 126 QDI------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRW 179
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
R + + L G+ E F L ID P I+++ +D
Sbjct: 180 RKQTLLFSAT-LEGRGVEGFTADL-LKNPAHIDAE-----PPRRERKKISQWYHRAD 229
>gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
Length = 416
Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 68/237 (28%), Gaps = 34/237 (14%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
GFS P Q E + + SA G GKT A L + P
Sbjct: 22 GFSRPTQVQAEAI------------PQALDGRDVLASAPTGTGKTAAFAIPALQYLLDFP 69
Query: 107 -----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
++ L + AE ++ L+ + F + + ++D+L +
Sbjct: 70 RRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQE--HADILATT 125
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
I + +I DEA D+ + L+
Sbjct: 126 QDI------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSAECRW 179
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
R + + L G+ E F L ID P I+++ +D
Sbjct: 180 RKQTLLFSAT-LEGRGVEGFTADL-LKNPAHIDAE-----PPRRERKKISQWYHRAD 229
>gi|206580893|ref|YP_002240749.1| type I site-specific deoxyribonuclease, HsdR family [Klebsiella
pneumoniae 342]
gi|206569951|gb|ACI11727.1| type I site-specific deoxyribonuclease, HsdR family [Klebsiella
pneumoniae 342]
Length = 1031
Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 50/330 (15%), Positives = 101/330 (30%), Gaps = 50/330 (15%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISV-ICLANSE--TQLKTTLWA---EVSKWLSLLPNKH 139
+G GK+ WL W+ P V I +E Q+++ E+
Sbjct: 278 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVDEEI------YRTSS 331
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT--YSEERPDTFVGHHNTYGMAIIN 197
++ + HP PW L G S+ T +E + + +
Sbjct: 332 GNDLIATLNHPNPWLICSLVHKFGRRSEAEDTAATDDFITELQQSLTKTFRAKGDLFVFV 391
Query: 198 DE-------------ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
DE + P+ + +G G + + + + G + +
Sbjct: 392 DECHRTQSGKLHNAMTAILPEALFIGFTGTPLMKKDKKKSV------EVFGPYIHTYKFD 445
Query: 245 LDDWKRFQIDTR------TVEGIDPSFHEGIIARYGLD-SDVTRVEVCGQFPQQDIDSFI 297
+D R + S++ + ++ ++
Sbjct: 446 EAVADGVVLDLRYEARDIDQYLTSEKKVDDWFEAKTRGLSNLAKTQLKQKWGSMQ-KLLS 504
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTN 357
+ +E+ +N P +M + G+ +V + +S+TD
Sbjct: 505 SKSRLEQIVNDILLDMDTRPRLM-----DGRGNAMLVCSSVYQACKVYEMFSQTD---LA 556
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYL 387
K++ +V +RPDA I TGA + L
Sbjct: 557 GKVA-IVTSFRPDAASIKGEETGAGLTEKL 585
>gi|310722509|ref|YP_003969332.1| Dda DNA helicase [Aeromonas phage phiAS5]
gi|306021352|gb|ADM79886.1| Dda DNA helicase [Aeromonas phage phiAS5]
Length = 454
Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 27/147 (18%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
S++ + IS G GK+ L L+ + + VI A + Q K L
Sbjct: 17 QKRSIDAVLNDRSHITISGPAGSGKSFLTKILIK-KLIEKNNGGVILSAPT-HQAKIVL- 73
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+ + + +H + I Y + R + + + D
Sbjct: 74 ----------------------SKMSGYTASTIHSIMKIHPDTYEDV-REFKQSKSDK-A 109
Query: 186 GHHNTYGMAIINDEASGTPDVINLGIL 212
+I DEAS + + IL
Sbjct: 110 KKDLNEVRYLIVDEASMVDNDLFEIIL 136
>gi|145603324|ref|XP_369340.2| hypothetical protein MGG_06124 [Magnaporthe oryzae 70-15]
gi|145011578|gb|EDJ96234.1| hypothetical protein MGG_06124 [Magnaporthe oryzae 70-15]
Length = 1998
Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RPG V+ +A L E V W + L +
Sbjct: 1176 SPTGSGKTVAAELAMWWAFRERPGSKVVYIAP-----MKALVRERVKDWGARLAQPMGLK 1230
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + II DE
Sbjct: 1231 LVELTGDNTPDTRTIKDADVIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1281
>gi|209885731|ref|YP_002289588.1| phage DNA Packaging Protein [Oligotropha carboxidovorans OM5]
gi|209873927|gb|ACI93723.1| phage DNA Packaging Protein [Oligotropha carboxidovorans OM5]
Length = 434
Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 68/419 (16%), Positives = 129/419 (30%), Gaps = 80/419 (19%)
Query: 84 AGRGIGKTTLNA------WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A L L ++ +P + + +E ++ + VS L++
Sbjct: 52 GGRGAGKTRAGAEWIRAQALGLAPLAQQPAGRIALVGETEHDVREVMIEGVSGLLAVHRR 111
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
W + +S E P++ G
Sbjct: 112 DE----------RPMWQPSRRRLEWKN-----GAVAHAFSAEDPESLRG---PQFACAWA 153
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTS-NPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
DE + + +F + PR+L +P KR D
Sbjct: 154 DELAK-----WRYAEAAF---DMLQFGLRLGAQPRQLIT----TTPRPTALIKRLLNDES 201
Query: 257 TVE----------GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
V + P+F + ++ARY + + R E+ G+ ++ D+ +IE
Sbjct: 202 CVTTRAATRSNALHLAPTFLQSVMARY-AGTRLGRQELDGELIEERPDALWSRGLIETC- 259
Query: 307 NREPCPDPYAPLIMGCD-IAEEGGDNTV-------VVLRRGPVIEHLFDWSKTDLRTTNN 358
R P +++ D A G V G + ++
Sbjct: 260 -RISEAPPLQRIVVAVDPPATSGKRADACGIVAAGVAADNGLYVLADETLTQAAPAAWAA 318
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNRRTEL 416
+ L + DA++++ N G + + V V + R E
Sbjct: 319 RAVALWRRLEADALVVEVNQGGEMVRAVIAQVDPSVPVQPVRALRGKW-------LRAE- 370
Query: 417 HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+A E + H+G+ L+ + +G + S +S D+ D L++
Sbjct: 371 --PIATLYEQGR-VRHAGVFAALED-EMCDFATSG---LSS-----GRSPDHLDALVWA 417
>gi|221117267|ref|XP_002154001.1| PREDICTED: similar to yeast Swi2/Snf2-Like family member (ssl-1),
partial [Hydra magnipapillata]
Length = 2164
Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 48/153 (31%), Gaps = 22/153 (14%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVI--CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
G+GKT + +L ++ G + + L L E+ KW +F Q
Sbjct: 657 GLGKT-IQTIALLAHLACEEGCWGPHLIIVPTSVMLNWEL--ELKKWCPGFKILTYFGTQ 713
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ G + +C T + II DEA
Sbjct: 714 ----------KERKIKRAGWCKPNAFHVCITSYKLVIQDHQAFKRRKWKYIILDEAQNIK 763
Query: 205 D---VINLGILGFLTERNANRFWIMTSNPRRLS 234
+ +L F N++R ++T P + S
Sbjct: 764 NFKSQRWQTLLNF----NSHRRLLLTGTPLQNS 792
>gi|163868971|ref|YP_001610200.1| hypothetical protein Btr_1983 [Bartonella tribocorum CIP 105476]
gi|161018647|emb|CAK02205.1| phage-related protein [Bartonella tribocorum CIP 105476]
Length = 453
Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 39/303 (12%), Positives = 88/303 (29%), Gaps = 27/303 (8%)
Query: 84 AGRGIGKT---TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
GRG GKT L + +V + +I A + N+
Sbjct: 39 GGRGSGKTRSFALMSAVVGYRHGMAGERGIILCA---------------RQFQNSLNESS 83
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
E ++ P+ D + ++ + DEA
Sbjct: 84 LEEIKRAIEAYPFLQDYYEIGDKYIKSKDGRIAYVFAGLDRNIASIKSMGRVFLCWVDEA 143
Query: 201 SGTPDVINLGILGFLTERNA--NRFWIMTSNPRRLSGKFYEIFNK-PLDDWKRFQIDTRT 257
+ ++ L E N +T NP + + F + K +I+ R
Sbjct: 144 EPVTETAWQTLIPTLREEGDDWNAELWVTWNPYHENAPVEKRFRNVDNPNIKGVEINWRD 203
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
+ ++ + G + Q ++ ++E + P P
Sbjct: 204 NPKFPEKLNRDRLSDLQQRPEQYNHIWEGGYLQAVQGAYYQKCLLEAEMEGRITTVPRDP 263
Query: 318 ---LIMGCDIAEEG--GDNTVVVLRR-GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
+ + DI G D T + + + + D+ + + + + + ++ A
Sbjct: 264 LMQVRIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHVGWVFQRGYEKA 323
Query: 372 III 374
+++
Sbjct: 324 LMV 326
>gi|255729652|ref|XP_002549751.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240132820|gb|EER32377.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 1162
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE----TQLK 121
++ G+GKT + + ++L + P +I +A + Q+K
Sbjct: 107 VLVALPTGLGKTFIASTVMLNFLRWFPNSKIIFMAPTRPLVAQQIK 152
>gi|330911327|gb|EGH39837.1| phage terminase, large subunit [Escherichia coli AA86]
Length = 555
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 24/152 (15%)
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNP-RRLS 234
RP G ++ DEA+ D + + LT A I T N L
Sbjct: 159 SSRPSNLRGLQGD----VVIDEAAFHESLDELLKAAM-ALTMWGARVRIISTHNGVDNLF 213
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTV--------------EGIDPSFHEGIIARYGLDSDVT 280
++ + + D+ +I + P + ++
Sbjct: 214 NQYIQEAREGRKDYSVHRITLDDAIADGLYRRICYVTGQEWSPESEQKWRDDLYKNAPTR 273
Query: 281 RV--EVCGQFPQQDIDSFIPLNIIEEALNREP 310
E G P++ ++IP +IE A++R+
Sbjct: 274 EDADEEYGCIPKKSGGAYIPHALIEMAMSRDI 305
>gi|171690334|ref|XP_001910092.1| hypothetical protein [Podospora anserina S mat+]
gi|170945115|emb|CAP71226.1| unnamed protein product [Podospora anserina S mat+]
Length = 1993
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W PG V+ +A L E V W L
Sbjct: 1164 SPTGSGKTVAAELAMWWAFREHPGSKVVYIAP-----MKALVRERVKDWGDRLAKPLGLR 1218
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + +I DE
Sbjct: 1219 LVELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQT------RGYVRKVSLVVI-DE 1269
>gi|297519140|ref|ZP_06937526.1| Terminase, ATPase subunit [Escherichia coli OP50]
Length = 159
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
I W D R + I L E+Y I ID+ + ++
Sbjct: 11 RILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVDHGVYENVK 58
>gi|212545286|ref|XP_002152797.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
gi|210065766|gb|EEA19860.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
Length = 2022
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 22/155 (14%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA--------ISAGRGIGKTTLNAWLVLWLMSTRP 106
Q +E + N ++F + + G GKT + W RP
Sbjct: 1125 QNPILEEIYGQRFQFFNPMQTQLFHTLYHTSANVLLGSPTGSGKTVACELAMWWAFRERP 1184
Query: 107 GISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI- 164
G V+ +A L E V W + ++ L+ P + + I
Sbjct: 1185 GSKVVYIAP-----MKALVRERVQDWRKRITTAMGLKLVELTGDNTPDTRTIRDADIIIT 1239
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + R++ G+ + II DE
Sbjct: 1240 TPEKWDGISRSWQT------RGYVRQVSLVII-DE 1267
>gi|255933656|ref|XP_002558207.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582826|emb|CAP81028.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 2009
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W +PG V+ +A L E V W L + +
Sbjct: 1166 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAP-----MKALVRERVQDWRKRLTRQMGLK 1220
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ +I DE
Sbjct: 1221 LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYVR-------KVSLVIIDE 1271
>gi|92113525|ref|YP_573453.1| hypothetical protein Csal_1399 [Chromohalobacter salexigens DSM
3043]
gi|91796615|gb|ABE58754.1| protein of unknown function DUF264 [Chromohalobacter salexigens DSM
3043]
Length = 594
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 24/164 (14%), Positives = 44/164 (26%), Gaps = 22/164 (13%)
Query: 242 NKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
P W++ I+ G D + + Y + + +F +F +
Sbjct: 326 RGPDGQWRQIVTIEDAIAGGCDLFDLDQLRLEY--SDEEFANLLMCEFVDDSQSAFPMMT 383
Query: 301 IIEEALNREPCPDPYAP----------LIMGCDIAEEGGDN-----TVVVL--RRGPVIE 343
+ ++ + P + +G D A + D V+ R
Sbjct: 384 MQRCMVDSWDIWRDWKPFAARPFGDKPVWLGYDPAGDNLDGDGAGLVVLAPAKNRNDRHR 443
Query: 344 HLFDWS--KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
L D I + +Y I ID N G
Sbjct: 444 ILEKHRIKGQDYEEQAGFIEQVTRRYNVQFIGIDINGMGEAVAQ 487
>gi|159164912|gb|ABV80241.2| mutant required to maintain repression 1 [Zea mays]
Length = 1435
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 55 QLEFMEVVDAHCLNSV-NNPNPEVFKGAISAG----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + + + + K + G G GKT L + M P
Sbjct: 852 QREAFEFMWTNLVGDIRLDEIKHGAKPDVVGGCVICHAPGTGKTRLAIVFIQTYMKVFPD 911
Query: 108 ISVICLANSETQLKTTLWA---EVSKW 131
+ +A + L+A E KW
Sbjct: 912 CRPVIIAP-----RGMLFAWDEEFKKW 933
>gi|159164911|gb|ABV80240.2| mutant required to maintain repression 1 [Zea mays]
Length = 1435
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 55 QLEFMEVVDAHCLNSV-NNPNPEVFKGAISAG----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + + + + K + G G GKT L + M P
Sbjct: 852 QREAFEFMWTNLVGDIRLDEIKHGAKPDVVGGCVICHAPGTGKTRLAIVFIQTYMKVFPD 911
Query: 108 ISVICLANSETQLKTTLWA---EVSKW 131
+ +A + L+A E KW
Sbjct: 912 CRPVIIAP-----RGMLFAWDEEFKKW 933
>gi|332701845|ref|ZP_08421933.1| hypothetical protein Desaf_0686 [Desulfovibrio africanus str.
Walvis Bay]
gi|332551994|gb|EGJ49038.1| hypothetical protein Desaf_0686 [Desulfovibrio africanus str.
Walvis Bay]
Length = 554
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 51/283 (18%), Positives = 87/283 (30%), Gaps = 68/283 (24%)
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN------REPCPDPY 315
++E I YG V R E+ P+ IP IEEA+ R D +
Sbjct: 257 KRKWYERIRNSYGPRVAVMREELDAI-PRDGGGQAIPGVWIEEAMREARPILRIALDDDF 315
Query: 316 A--------------------PLIMGCDIAEE---------GGDNTVVV--------LRR 338
A PL+ D A E D +VV +RR
Sbjct: 316 AKLPEDSRRVWGSEWIDRHLKPLLARLDPAREHVFGQDFARHRDFSVVAPLEIGQTLIRR 375
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY-LEMLGYHVYRV 397
P + + + + + ++R A+ DA +GA +Y + G+
Sbjct: 376 APFLLEMHNVPTRQQEQILWALIAALPRFRGGAM--DATGSGATLAEYTADKFGHERIHQ 433
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFA--SLINHSGLIQNLKSLKSFIVPNTGELAI 455
+ +A E K+ D E L + + +L++L+ G + +
Sbjct: 434 VMLSQAWYREHMP--------KLVDAFETGMIDLPRDADIESDLRALEEI----DGIIKL 481
Query: 456 ESKRVK------GAKSTDYSDGLMYT-FAENPPRSDMDFGRCP 491
R + + D + FA D+ P
Sbjct: 482 PDIRKQDLKDAELKRHGDSAIAFALGWFASQGTAEAFDYRPVP 524
>gi|255683197|ref|YP_003084405.1| UL15 [Duck enteritis virus]
gi|254840012|gb|ACT83557.1| UL15 [Anatid herpesvirus 1]
Length = 739
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 24/153 (15%)
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLAN----SETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GKT L+ ++ GI + A+ +E + + A + +W +H
Sbjct: 265 GKTWFIVPLIALALTKFRGIKIGYTAHIRKATEP-VFDEIDARIRRWFGNGRVEHI---- 319
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ + S SK T S ++ G + + + DEA+
Sbjct: 320 ---------KGETISFSFQDGSKSTVTFA---SSHNTNSLRGQ--DFNLLFV-DEANFIR 364
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
I+GFL + N ++ ++N + S F
Sbjct: 365 SDAVQTIVGFLNQTNCKIIFVSSTNTGKSSTSF 397
>gi|159164914|gb|ABV80243.2| mutant required to maintain repression 1 [Zea mays]
Length = 1435
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 55 QLEFMEVVDAHCLNSV-NNPNPEVFKGAISAG----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + + + + K + G G GKT L + M P
Sbjct: 852 QREAFEFMWTNLVGDIRLDEIKHGAKPDVVGGCVICHAPGTGKTRLAIVFIQTYMKVFPD 911
Query: 108 ISVICLANSETQLKTTLWA---EVSKW 131
+ +A + L+A E KW
Sbjct: 912 CRPVIIAP-----RGMLFAWDEEFKKW 933
>gi|159164908|gb|ABV80237.2| required to maintain repression 1 [Zea mays]
gi|159164910|gb|ABV80239.2| required to maintain repression 1 [Zea mays]
Length = 1435
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 55 QLEFMEVVDAHCLNSV-NNPNPEVFKGAISAG----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + + + + K + G G GKT L + M P
Sbjct: 852 QREAFEFMWTNLVGDIRLDEIKHGAKPDVVGGCVICHAPGTGKTRLAIVFIQTYMKVFPD 911
Query: 108 ISVICLANSETQLKTTLWA---EVSKW 131
+ +A + L+A E KW
Sbjct: 912 CRPVIIAP-----RGMLFAWDEEFKKW 933
>gi|67524049|ref|XP_660086.1| hypothetical protein AN2482.2 [Aspergillus nidulans FGSC A4]
gi|40744644|gb|EAA63800.1| hypothetical protein AN2482.2 [Aspergillus nidulans FGSC A4]
gi|259487904|tpe|CBF86944.1| TPA: DEAD/DEAH box helicase, putative (AFU_orthologue; AFUA_4G03070)
[Aspergillus nidulans FGSC A4]
Length = 2015
Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 19/151 (12%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAIS-----AGRGIGKTTLNAWLVLWLMSTRPGISV 110
LE + N + V + + G GKT + W RPG V
Sbjct: 1122 LEELYGQRFQYFNPMQTQLFHVLYHTAANVLLGSPTGSGKTVAAELAMWWAFRERPGSKV 1181
Query: 111 ICLANSETQLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI-DSKH 168
+ +A L E V W L ++ L+ P + + I +
Sbjct: 1182 VYIAP-----MKALVRERVMDWGRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPEK 1236
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + R++ +I DE
Sbjct: 1237 WDGISRSWQTRDYVR-------KVSLVIIDE 1260
>gi|159164909|gb|ABV80238.2| required to maintain repression 1 [Zea mays]
Length = 1435
Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 55 QLEFMEVVDAHCLNSV-NNPNPEVFKGAISAG----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + + + + K + G G GKT L + M P
Sbjct: 852 QREAFEFMWTNLVGDIRLDEIKHGAKPDVVGGCVICHAPGTGKTRLAIVFIQTYMKVFPD 911
Query: 108 ISVICLANSETQLKTTLWA---EVSKW 131
+ +A + L+A E KW
Sbjct: 912 CRPVIIAP-----RGMLFAWDEEFKKW 933
>gi|52079727|ref|YP_078518.1| putative phage terminase (large subunit) [Bacillus licheniformis
ATCC 14580]
gi|52785096|ref|YP_090925.1| XtmB [Bacillus licheniformis ATCC 14580]
gi|319646468|ref|ZP_08000697.1| XtmB protein [Bacillus sp. BT1B_CT2]
gi|52002938|gb|AAU22880.1| putative phage terminase (large subunit) [Bacillus licheniformis
ATCC 14580]
gi|52347598|gb|AAU40232.1| XtmB [Bacillus licheniformis ATCC 14580]
gi|317391056|gb|EFV71854.1| XtmB protein [Bacillus sp. BT1B_CT2]
Length = 432
Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 24/207 (11%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
I +E S ++G L + ++T+NP S Y F K + KRF +
Sbjct: 118 LIWIEECSEVKYEGFKELIGRLRHPYHRLYMMLTTNPVSQSNWTYRHFFKDERN-KRFIL 176
Query: 254 D---------------------TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
D + S+ + + D D+ R+ G+F
Sbjct: 177 DDEVLYKKRVAVVGDTYYHHSTADDNLFLPKSYLKQLDDMKAYDPDLYRIARKGRFGVNG 236
Query: 293 IDSFIPLNIIE-EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL-FDWSK 350
++E E + R+ G D E N VV P ++L W
Sbjct: 237 TRVLPQFEVMEHEEVMRQISAISNPLKRTGMDFGFEESYNAVVRAAVDPDKKYLYIYWEY 296
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDAN 377
+ T++K + + ++ +I A+
Sbjct: 297 YKNKMTDDKTAEELHEFAVAKELIKAD 323
>gi|288931818|ref|YP_003435878.1| hypothetical protein Ferp_1452 [Ferroglobus placidus DSM 10642]
gi|288894066|gb|ADC65603.1| protein of unknown function DUF699 ATPase putative [Ferroglobus
placidus DSM 10642]
Length = 763
Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 27/157 (17%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS------TRPGISVICLANSET 118
+ + E I+A RG GKT + + +L+S RP + ++ +A +
Sbjct: 218 EAFETFFDRKREKKAVVITANRGRGKTAVLGIVTPYLISRMNRVLKRP-VRILVVAPTPY 276
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
++T + + K L K + E +S +D++ ++ + R
Sbjct: 277 AVQTY-FKFLKKALVRQGMKEFKEKRS---------NDLVTVINSKWARVEYAVPRRAMV 326
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGF 214
E+ Y II DEA+G V+ + G
Sbjct: 327 EK---------DYADIIIVDEAAGIDVPVLWKIVEGA 354
>gi|240850562|ref|YP_002971962.1| phage terminase, large subunit [Bartonella grahamii as4aup]
gi|240267685|gb|ACS51273.1| phage terminase, large subunit [Bartonella grahamii as4aup]
Length = 441
Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 9/182 (4%)
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNA--NRFWIMTSNPRRLSGKFYEIFN-KPLDD 247
+ DEA + ++ L E +T NP R + + F +
Sbjct: 122 RILLCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRENAPVEKRFRFSDNEA 181
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EE 304
KR +I+ +E + + + G + + ++ ++ +E
Sbjct: 182 IKRVEINWSDNPKFPKILNEARLDDLRNRPETYKHIWEGDYLKAVQGAYYQKEMLAAEQE 241
Query: 305 ALNREPCPDPYAPLIMGCDIAEEG--GDNTVVVLRR-GPVIEHLFDWSKTDLRTTNNKIS 361
DP + DI G D T + + + + ++ + + + I
Sbjct: 242 GRIGRVARDPLMQIRAFWDIGGTGAKADATAIWIAQFVGREIRVLNYYEAQGQPLSEHIG 301
Query: 362 GL 363
L
Sbjct: 302 WL 303
>gi|156543626|ref|XP_001604556.1| PREDICTED: hypothetical protein [Nasonia vitripennis]
Length = 990
Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 15/134 (11%)
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI-SVICLANSETQLKTTLWAEVSKWLSLL 135
F + A G GKT + + L ++ + VI LA + E++ + +
Sbjct: 61 GFDLIVRAKSGTGKTAVFGIIALEMIDIKISSVQVIILAPT---------REIAIQIKEV 111
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
E++ L + + + + H + + D +
Sbjct: 112 IASLGCEIKGLKVESFIGGVAMDIDRKKLSNCHIAIGAPGRVKHLIDKGY-LKMDHVRLF 170
Query: 196 INDEASGTPDVINL 209
+ DEA D +
Sbjct: 171 VLDEA----DKLME 180
>gi|242087829|ref|XP_002439747.1| hypothetical protein SORBIDRAFT_09g019410 [Sorghum bicolor]
gi|241945032|gb|EES18177.1| hypothetical protein SORBIDRAFT_09g019410 [Sorghum bicolor]
Length = 1535
Score = 38.5 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 55 QLEFMEVVDAHCLNSV-NNPNPEVFKGAISAG----R--GIGKTTLNAWLVLWLMSTRPG 107
Q E E + + + + + K + G G GKT L + M P
Sbjct: 952 QREAFEFMWTNLVGGIRLDELKHGAKPDVVGGCVICHAPGTGKTRLAIVFIQTYMKVFPD 1011
Query: 108 ISVICLANSETQLKTTLWA---EVSKW 131
+ +A + L+A E KW
Sbjct: 1012 CRPVIIAP-----RGMLFAWDEEFKKW 1033
>gi|46949065|gb|AAT07420.1| UL89 DNA packaging protein [Macacine herpesvirus 3]
Length = 671
Score = 38.5 bits (88), Expect = 2.7, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID K + S ++ G ++ DEA + ILGFL +
Sbjct: 273 VISIDHKGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKEKAFNTILGFLAQNTT 329
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 330 KIIFISSTNTTSDATCF 346
>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
Length = 421
Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 69/237 (29%), Gaps = 34/237 (14%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
GFS P Q E + + SA G GKT A L + P
Sbjct: 22 GFSRPTQVQAEAI------------PQALDGRDVLASAPTGTGKTAAFAIPALQYLLDFP 69
Query: 107 -----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
++ L + AE ++ L+ + F + + ++D+L +
Sbjct: 70 RRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQE--HADILATT 125
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
I + +I DEA D+ + L+
Sbjct: 126 QDI------VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRW 179
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
R + + L G+ E F L D V+ P I+++ +D
Sbjct: 180 RKQTLLFSAT-LEGRGVEGFTADLLK------DPAHVDAEPPRRERKKISQWYHRAD 229
>gi|240851102|ref|YP_002972504.1| phage terminase large subunit [Bartonella grahamii as4aup]
gi|240268225|gb|ACS51813.1| phage terminase large subunit [Bartonella grahamii as4aup]
Length = 453
Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 46/306 (15%), Positives = 94/306 (30%), Gaps = 33/306 (10%)
Query: 84 AGRGIGKT---TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
GRG GKT L + +V + +I A + N+
Sbjct: 39 GGRGSGKTRSFALMSAVVGYRHGMAGERGIILCA---------------RQFQNSLNESS 83
Query: 141 FEMQSLSLHPAPWYSDVLHCSLG-IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI-IND 198
E ++ P+ D I SK + +R + + + D
Sbjct: 84 LEEIKRAIESYPFLQDYYDIGDKYIKSKDGRIVYVFAGLDR--NIASIKSMGRVFLCWVD 141
Query: 199 EASGTPDVINLGILGFLTERNA--NRFWIMTSNPRRLSGKFYEIFNK-PLDDWKRFQIDT 255
EA + ++ L E N +T NP + + F K +I+
Sbjct: 142 EAEPVTETAWQTLIPTLREEGKDWNAELWVTWNPCYENAPVEKRFRNVDNPHIKGAEINW 201
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
R + + + G++ Q ++ ++E + P
Sbjct: 202 RDNPQFPEKLNRDRMDDLQQRPEQYNHIWEGEYLQAVQGAYYQKCLLEAEMEGRITTVPR 261
Query: 316 AP---LIMGCDIAEEG--GDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYR 368
P + + DI G D T + + + G I L D+ + + + + + ++
Sbjct: 262 DPLMQVRIFWDIGGTGAKADATALWVAQFIGREIRVL-DYYEAQGQPLSEHVGWVFQRGY 320
Query: 369 PDAIII 374
A+++
Sbjct: 321 EKALMV 326
>gi|299532092|ref|ZP_07045486.1| mu-like prophage Flumu protein gp28 [Comamonas testosteroni S44]
gi|298719754|gb|EFI60717.1| mu-like prophage Flumu protein gp28 [Comamonas testosteroni S44]
Length = 470
Score = 38.2 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 39/240 (16%)
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA-------LNREPCPDPYAPLIM 320
+ D++ E P D F+ +I R L
Sbjct: 232 DFVKNGAADAESFDQEYMCI-PADDDSKFLEYGLITACEYLGGTDWKRGLQGPFQGRLFC 290
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR----PDAIIIDA 376
G DI + D TV+ + + +F + K + D + ID+
Sbjct: 291 GVDIGRK-KDLTVLWVV--EQLGDVFYTRHVETMEKMRKSDQEKILWPWFAICDRVCIDS 347
Query: 377 NNTGARTCDYLEML--GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
G D + + + V + + + K+ +
Sbjct: 348 TGLGIGWTDDAQDKFGEHRIEGVSFTGQVKEALAYPLKGAMEDRKIR-------IPEDPK 400
Query: 435 LIQNLKSLKSFIVPNTG--ELAIESKRVKGAKSTD-YSD---GLMYTF-AENPPRSDMDF 487
+ +L+ ++ + + G ES + D ++D L A N P + ++
Sbjct: 401 IRADLRKVQK-VTTSAGNIRFVAES-------TPDGHADRFWALALALQAGNSPAAPFEY 452
>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
Length = 416
Score = 38.2 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 34/222 (15%), Positives = 62/222 (27%), Gaps = 22/222 (9%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-----GISVICLANS 116
+ SA G GKT A L + P ++ L +
Sbjct: 25 RPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIPALQYLLDFPRRKPGPARILILTPT 84
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
AE ++ L+ + F + + ++D+L + I +
Sbjct: 85 RELAMQV--AEQAQALAKNTRLNIFTITGGVQYQE--HADILATTQDI------VVATPG 134
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+I DEA D+ + L+ R + + L G+
Sbjct: 135 RLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQTLLFSAT-LEGR 193
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
E F L D V+ P I+++ +D
Sbjct: 194 GVEGFTADLLK------DPAHVDAEPPRRERKKISQWYHRAD 229
>gi|91199577|emb|CAI77931.1| putative helicase [Streptomyces ambofaciens ATCC 23877]
gi|96771624|emb|CAI78205.1| putative helicase [Streptomyces ambofaciens ATCC 23877]
gi|117164172|emb|CAJ87711.1| putative helicase [Streptomyces ambofaciens ATCC 23877]
gi|126347284|emb|CAJ88989.1| putative helicase [Streptomyces ambofaciens ATCC 23877]
Length = 886
Score = 38.2 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 52 RSWQLEFMEVVDAHC-LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
R Q+E + + ++ ++ PE +G I + G GKT + A + G +
Sbjct: 5 REHQVEQKQSIREWVGFSARSSVPPEGMRGTIVSATGSGKTIMAAASA---LECFAGGRI 61
Query: 111 ICLANSETQL 120
+ + L
Sbjct: 62 LVTVPTLDLL 71
>gi|302381364|ref|YP_003817187.1| hypothetical protein Bresu_0249 [Brevundimonas subvibrioides ATCC
15264]
gi|302191992|gb|ADK99563.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC
15264]
Length = 556
Score = 38.2 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 41/239 (17%), Positives = 75/239 (31%), Gaps = 23/239 (9%)
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASG---------TPDVINLGILGFLTERNA 220
+ + +S E P+ G A DE L +L
Sbjct: 235 GAVAQAFSAEDPEALRG---PQFAAAWADEFCAWPRGGRGGRGGPGATLALLRMGLRLGE 291
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
++T+ P + G ++ +P + + + F EG+ YG
Sbjct: 292 RPRLVVTTTP-KPIGALRDLRAEP-GLVQTHAATRDNADHLAAGFVEGLERLYGGTRKAA 349
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNT--VVVLR 337
E+ G+ +Q S ++ A R + +++ D GG+ VV R
Sbjct: 350 -QELEGRVVEQ-EGSLFTAEMMGRA--RGVLEGSFDRIVVAIDPTTTAGGNACGIVVAGR 405
Query: 338 RGPVIEHLFDWS--KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G L D S + E++ A++++ N G L+ G V
Sbjct: 406 VGDRAHVLADRSVAGLGPDGWARRAVRAAEEFGAVALVVEVNQGGEMVRAVLKTAGCSV 464
>gi|312881427|ref|ZP_07741222.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370909|gb|EFP98366.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122]
Length = 724
Score = 38.2 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 37/206 (17%), Positives = 72/206 (34%), Gaps = 20/206 (9%)
Query: 239 EIFNKP-----LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ FN P L ++ +Q +D + D+ R +F +
Sbjct: 161 DTFNDPVTQTYLQLYRAYQEACDRAGLVDFAEILLRAQELLRDNKHIRQHYQTRFKHILV 220
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R +I+ G D+ + RG +E++ K +
Sbjct: 221 DEFQDTNNIQYAWLRLMAGPDTHVMIV-------GDDDQSIYGWRGAKVENIE---KFTV 270
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ L + YR I+DA+N A + E +G ++ + + N
Sbjct: 271 EFPSVNTIRLEQNYRSTKTILDASN--ALIANNTERMGKELWTDGSAGEPISVYSAYNEL 328
Query: 414 TELHV---KMADWLEFASLINHSGLI 436
E K+ +W E ++ + ++
Sbjct: 329 DEARFAVSKIKEWQEKGGVLTDTAML 354
>gi|302539315|ref|ZP_07291657.1| TtrA [Streptomyces sp. C]
gi|302448210|gb|EFL20026.1| TtrA [Streptomyces sp. C]
Length = 888
Score = 38.2 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
S + P+ +G I + G GKT A + PG ++ + L
Sbjct: 23 SRSPVPPQGTRGTIVSATGSGKTITAAAGA---LECFPGGRILVTVPTLDLL 71
>gi|307727814|ref|YP_003911027.1| SNF2-related protein [Burkholderia sp. CCGE1003]
gi|307588339|gb|ADN61736.1| SNF2-related protein [Burkholderia sp. CCGE1003]
Length = 1227
Score = 38.2 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 51/203 (25%), Gaps = 25/203 (12%)
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
V W F + L +G +T + +++ G
Sbjct: 739 VHNWREEARR---FAPELKVLVLNGPQRKERFEQIGEHELILTTYALLWRDQKV--LAG- 792
Query: 188 HNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
H + +I DEA + + +A +T P N +
Sbjct: 793 HEYH--LLILDEAQYVKNATTKAAQ-AIRGLSARHRLCLTGTPLE---------NHLGEL 840
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
W +F G F + D R + + + F+ +E
Sbjct: 841 WSQFDFLLPGFLGTQKDFTRRWRNPIEKNHDGVRRSLLARRIRP----FMLRRRKDEVAK 896
Query: 308 REPCPDPYAPLIMGCDIAEEGGD 330
P ++ D+ D
Sbjct: 897 ELPAKT---TIVCSVDLEGAQRD 916
>gi|164659175|ref|XP_001730712.1| hypothetical protein MGL_2166 [Malassezia globosa CBS 7966]
gi|159104609|gb|EDP43498.1| hypothetical protein MGL_2166 [Malassezia globosa CBS 7966]
Length = 838
Score = 38.2 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 15/152 (9%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA-EVSKWLSLLPNKHWFEMQS 145
G+GKT ++ L+ P + +A + L+ W E+ K+ L W Q
Sbjct: 244 GMGKT----IQMISLLVADPKRPSLVVAPTVAILQ---WRNEMQKYAPGLRVVVWHGAQR 296
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE----RPDTFVGHHNTYGMAIINDEAS 201
DV+ S + + + R + H II DEA
Sbjct: 297 SRDRDTLSTVDVVLTSYAVLESTFRRDRYGVTRNGRHVREQSL--LHAMKWRRIILDEAH 354
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + ++ W ++ P +
Sbjct: 355 HIKERTSNTARSAFA-LQSDFKWCLSGTPLQN 385
>gi|289619624|emb|CBI53907.1| unnamed protein product [Sordaria macrospora]
Length = 2051
Score = 38.2 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 22/152 (14%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGA--------ISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
+E + A N +VF + + G GKT + W RPG
Sbjct: 1170 ALEEIYAQRFQYFNPMQTQVFHTLYHTPANVLLGSPTGSGKTVACELAMWWAFRERPGSK 1229
Query: 110 VICLANSETQLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI-DSK 167
V+ +A L E V W + L ++ L+ P + + I +
Sbjct: 1230 VVYIAP-----MKALVRERVKDWGARLAKPLGLKLVELTGDNTPDTRTIQDADIIITTPE 1284
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + R++ G+ + II DE
Sbjct: 1285 KWDGISRSWQT------RGYVRKVSLVII-DE 1309
>gi|183600815|ref|ZP_02962308.1| hypothetical protein PROSTU_04416 [Providencia stuartii ATCC 25827]
gi|188019600|gb|EDU57640.1| hypothetical protein PROSTU_04416 [Providencia stuartii ATCC 25827]
Length = 413
Score = 38.2 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 21/200 (10%)
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH-HN-------TYGMAIIND 198
++ PW SD K+ T CR+ S F G HN + D
Sbjct: 79 AIRSVPWLSDFYELG----EKYIRTKCRSVSYV----FAGLRHNLDSIKSKARILIAWVD 130
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-PLDDWKRFQIDTRT 257
EA ++ + + E + W+ T NP + + F K P D+ +++
Sbjct: 131 EAESVSEIAWTKLAPTVREAGSE-IWV-TWNPEKDGSATDKRFRKEPPDNAIIVEMNYDD 188
Query: 258 VEGIDPSFHEGIIARYGL-DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
E ++ D + G + + + + ++ +
Sbjct: 189 NPWFPSVLEEERLSDQSRLDPNTYAWIWEGAYLENSDKQVLANKYVVQSFP-DDLWKQAD 247
Query: 317 PLIMGCDIAEEGGDNTVVVL 336
L+ G D NT++ +
Sbjct: 248 RLLFGADFGFAKDPNTLIRM 267
>gi|71004784|ref|XP_757058.1| hypothetical protein UM00911.1 [Ustilago maydis 521]
gi|46096862|gb|EAK82095.1| hypothetical protein UM00911.1 [Ustilago maydis 521]
Length = 1490
Score = 38.2 bits (87), Expect = 3.6, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSE---TQLKT 122
G+GKT + A ++L P ++ LA + Q KT
Sbjct: 304 GLGKTFIAAVVILNFFRWYPDGKILFLAPTRPLVDQQKT 342
>gi|319943331|ref|ZP_08017613.1| hypothetical protein HMPREF0551_0459 [Lautropia mirabilis ATCC
51599]
gi|319743146|gb|EFV95551.1| hypothetical protein HMPREF0551_0459 [Lautropia mirabilis ATCC
51599]
Length = 220
Score = 38.2 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+WQ H + AI G GKTTL A L S PG V+
Sbjct: 30 TAWQASPRTAFVDHLMARAGTHAGRPAIIAIDGRSGSGKTTLTAALA----SVVPGAQVL 85
Query: 112 CLANSETQLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLH--PAPWYSDVLHCSLGID 165
L +W E + +W L + +L P PW S+ I
Sbjct: 86 -------HLDDLIWNEPLYQWDQQLVAALSELHTTGALDLIPHPWREHGREGSIRIT 135
>gi|49475449|ref|YP_033490.1| terminase large subunit protein [Bartonella henselae str.
Houston-1]
gi|49475495|ref|YP_033536.1| terminase large subunit protein [Bartonella henselae str.
Houston-1]
gi|49238255|emb|CAF27468.1| Terminase large subunit protein [Bartonella henselae str.
Houston-1]
gi|49238301|emb|CAF27516.1| Terminase large subunit protein [Bartonella henselae str.
Houston-1]
Length = 340
Score = 38.2 bits (87), Expect = 3.8, Method: Composition-based stats.
Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 17/186 (9%)
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNA--NRFWIMTSNPRRLSGKFYEIFN-KPLDD 247
+ DEA + ++ L E +T NP R + F +
Sbjct: 83 RILLCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRDNAPVERRFRFSNNEA 142
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE--- 304
KR +I+ +E + + + G + ++ ++
Sbjct: 143 IKRVEINWSDNPKFPKILNEARLDDLKNRPETYKHIWEGAYLTAIQGAYYQKEMLAAEQE 202
Query: 305 ----ALNREPCPDPYAPLIMGCDIAEEG--GDNTVVVLRR-GPVIEHLFDWSKTDLRTTN 357
+ R+P A DI G D T + + + + D+ + + +
Sbjct: 203 GRIGRVARDPLMQMRAFW----DIGGTGAKADATAIWIAQFVGREIRVLDYYEAQGQPLS 258
Query: 358 NKISGL 363
I L
Sbjct: 259 EHIGWL 264
>gi|327355898|gb|EGE84755.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis ATCC 18188]
Length = 2024
Score = 37.8 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 22/152 (14%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGA--------ISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
+E + A N ++F + + G GKT + W +PG
Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1190
Query: 110 VICLANSETQLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI-DSK 167
V+ +A L E V W L ++ L+ P + + I +
Sbjct: 1191 VVYIAP-----MKALVRERVHDWRRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPE 1245
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + R++ G+ + II DE
Sbjct: 1246 KWDGISRSWQT------RGYVRQVSLVII-DE 1270
>gi|239609198|gb|EEQ86185.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis ER-3]
Length = 2024
Score = 37.8 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 22/152 (14%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGA--------ISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
+E + A N ++F + + G GKT + W +PG
Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1190
Query: 110 VICLANSETQLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI-DSK 167
V+ +A L E V W L ++ L+ P + + I +
Sbjct: 1191 VVYIAP-----MKALVRERVHDWRRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPE 1245
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + R++ G+ + II DE
Sbjct: 1246 KWDGISRSWQT------RGYVRQVSLVII-DE 1270
>gi|261189015|ref|XP_002620920.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis SLH14081]
gi|239591924|gb|EEQ74505.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis SLH14081]
Length = 2024
Score = 37.8 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 22/152 (14%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGA--------ISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
+E + A N ++F + + G GKT + W +PG
Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKTVAAELAMWWAFREKPGSK 1190
Query: 110 VICLANSETQLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI-DSK 167
V+ +A L E V W L ++ L+ P + + I +
Sbjct: 1191 VVYIAP-----MKALVRERVHDWRRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPE 1245
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + R++ G+ + II DE
Sbjct: 1246 KWDGISRSWQT------RGYVRQVSLVII-DE 1270
>gi|85105138|ref|XP_961895.1| activating signal cointegrator 1 complex subunit 3 [Neurospora crassa
OR74A]
gi|28923479|gb|EAA32659.1| activating signal cointegrator 1 complex subunit 3 [Neurospora crassa
OR74A]
Length = 2066
Score = 37.8 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RPG V+ +A L E V W + L +
Sbjct: 1199 SPTGSGKTVACELAMWWAFRERPGSKVVYIAP-----MKALVRERVKDWGARLAKPLGLK 1253
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + II DE
Sbjct: 1254 LVELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQT------RGYVRKVSLVII-DE 1304
>gi|18640523|ref|NP_570364.1| DNA packaging protein A [Synechococcus phage P60]
gi|18478753|gb|AAL73302.1| DNA packaging protein A [Synechococcus phage P60]
Length = 308
Score = 37.8 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Query: 314 PYAPLIMGCDIAEEGGDNTV-VVLRRGP---VIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
Y I+ D + G D TV VVL + + L + T + I L ++Y+
Sbjct: 77 DYDETIVSVDPSGRGTDETVAVVLSQANGYVFVRDLKAYRDGYSDATLSDIVRLGKRYKA 136
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
+++++N G L
Sbjct: 137 SRLLVESN-FGDGMVCELFNRHIQQMGAGFS 166
>gi|213406229|ref|XP_002173886.1| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces japonicus
yFS275]
gi|212001933|gb|EEB07593.1| ATP-dependent 3' to 5' DNA helicase [Schizosaccharomyces japonicus
yFS275]
Length = 812
Score = 37.8 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 15/116 (12%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G+GKT + A +++ P ++ LA ++ L + A + L+ +P E+
Sbjct: 156 GLGKTFIAAVVMMNYYRWFPQSNIAFLAPTKPLLYQQMQACIH--LTGIPESSIVELNGE 213
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI--INDEA 200
L L D + + +T + + + + + DEA
Sbjct: 214 V-------KPELRKQLFRDKRVFFVTPQTLNND----IQTEVCDPRLFVCLVFDEA 258
>gi|302894383|ref|XP_003046072.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726999|gb|EEU40359.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1970
Score = 37.8 bits (86), Expect = 4.3, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RP V+ +A L E V W + L +
Sbjct: 1158 SPTGSGKTVAAELAMWWAFRERPKSKVVYIAP-----MKALVRERVKDWGARLARPLGLK 1212
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + II DE
Sbjct: 1213 LVELTGDNTPDTRTIQDADVIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1263
>gi|194899456|ref|XP_001979275.1| GG24642 [Drosophila erecta]
gi|190650978|gb|EDV48233.1| GG24642 [Drosophila erecta]
Length = 1450
Score = 37.8 bits (86), Expect = 4.6, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 60/198 (30%), Gaps = 20/198 (10%)
Query: 16 FDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR--SWQLEFMEVVDAH-CLNSVNN 72
D+ W D+ + +H E+ EG P E ++ H + N
Sbjct: 1 MDVNWIDDDDDLVAALAMHEEQKTEEADGTEGHPQPELSDEACEGFDMAAGHNWIYPNNL 60
Query: 73 PNPEVFKGAISAG----------RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
P + + + G+GKT + A L+ P ++ +A + +
Sbjct: 61 PLRSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVLMYNFYRWYPKGKIVFMAPTRPLVSQ 120
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
++ ++P +Q P P +++ + + +
Sbjct: 121 ----QIHASQKIMPFPSADTVQLTGQLPRPKRAELWDSKRVFFATPQVVHSDMLTADGGS 176
Query: 183 TFVGHHNTYGMAIINDEA 200
F I+ DEA
Sbjct: 177 NFP---FGSIKLIVVDEA 191
>gi|296083594|emb|CBI23583.3| unnamed protein product [Vitis vinifera]
Length = 1287
Score = 37.8 bits (86), Expect = 4.6, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 10/148 (6%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G+GKT + L+L RPG +S L A +S+W L E S+
Sbjct: 634 GLGKTVMTIALIL----ARPGRR-----SSGGTLIVCPMALLSQWKDELETHSKPESISI 684
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
+H ++ D + T + + + H ++ DEA
Sbjct: 685 FIHYGGDRTNDPKVISEHDVVLTTYGVLTSAYKNDENSSIFHRVEWYRVVLDEAHTIKSS 744
Query: 207 INLGILGFLTERNANRFWIMTSNPRRLS 234
L ++ W +T P + +
Sbjct: 745 KTLSAQAAFALP-SHCRWCLTGTPLQNN 771
>gi|242815191|ref|XP_002486521.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714860|gb|EED14283.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500]
Length = 2030
Score = 37.8 bits (86), Expect = 4.8, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RPG V+ +A L E V W L +
Sbjct: 1164 SPTGSGKTVACELAMWWAFRERPGSKVVYIAP-----MKALVRERVQDWRKRLTAAMGLK 1218
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + II DE
Sbjct: 1219 LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1269
>gi|238502669|ref|XP_002382568.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
gi|220691378|gb|EED47726.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
Length = 1997
Score = 37.8 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W +PG V+ +A L E V W L +
Sbjct: 1163 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAP-----MKALVRERVHDWKKRLTGPMGLK 1217
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ +I DE
Sbjct: 1218 LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYVR-------KVSLVIIDE 1268
>gi|169775993|ref|XP_001822463.1| helicase mug81 [Aspergillus oryzae RIB40]
gi|83771198|dbj|BAE61330.1| unnamed protein product [Aspergillus oryzae]
Length = 1998
Score = 37.8 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W +PG V+ +A L E V W L +
Sbjct: 1163 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAP-----MKALVRERVHDWKKRLTGPMGLK 1217
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ +I DE
Sbjct: 1218 LVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYVR-------KVSLVIIDE 1268
>gi|20026680|ref|NP_612722.1| DNA packaging terminase subunit 1 [Panine herpesvirus 2]
gi|19881108|gb|AAM00728.1|AF480884_80 DNA packaging protein UL89 [Panine herpesvirus 2]
Length = 672
Score = 37.4 bits (85), Expect = 5.0, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
+ + + ID + + S ++ G ++ DEA IL
Sbjct: 265 YLVENKDNVISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTIL 321
Query: 213 GFLTERNANRFWIMTSNPRRLSGKF 237
GFL + +I ++N + F
Sbjct: 322 GFLAQNTTKIIFISSTNTTSDATCF 346
>gi|73695754|gb|AAZ80628.1| rhUL89 [Macacine herpesvirus 3]
Length = 671
Score = 37.4 bits (85), Expect = 5.1, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID K + S ++ G ++ DEA ILGFL +
Sbjct: 273 VISIDHKGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 329
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 330 KIIFISSTNTTSDATCF 346
>gi|222615621|gb|EEE51753.1| hypothetical protein OsJ_33185 [Oryza sativa Japonica Group]
Length = 726
Score = 37.4 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
++ G+GKT + A ++ P ++ A +
Sbjct: 264 TLVALPTGLGKTFIAAVVMYNYFRWFPEGKIVFTAPTR 301
>gi|218185362|gb|EEC67789.1| hypothetical protein OsI_35346 [Oryza sativa Indica Group]
Length = 648
Score = 37.4 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
++ G+GKT + A ++ P ++ A +
Sbjct: 186 TLVALPTGLGKTFIAAVVMYNYFRWFPEGKIVFTAPTR 223
>gi|62734194|gb|AAX96303.1| Similar to probable ATP-dependent RNA helicase - fission yeast
(Schizosaccharomyces pombe) [Oryza sativa Japonica
Group]
gi|77548994|gb|ABA91791.1| Type III restriction enzyme, res subunit family protein, expressed
[Oryza sativa Japonica Group]
Length = 1488
Score = 37.4 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
++ G+GKT + A ++ P ++ A +
Sbjct: 264 TLVALPTGLGKTFIAAVVMYNYFRWFPEGKIVFTAPTR 301
>gi|320035817|gb|EFW17757.1| DEAD/DEAH box helicase [Coccidioides posadasii str. Silveira]
Length = 1970
Score = 37.4 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W +PG V+ +A L E V W L +
Sbjct: 1155 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAP-----MKALVRERVQDWRRRLAMPLGLK 1209
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + + I + + + R++ G+ + II DE
Sbjct: 1210 LVELTGDNTPDTRTIRNADIIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1260
>gi|303321375|ref|XP_003070682.1| activating signal cointegrator 1 complex subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110378|gb|EER28537.1| activating signal cointegrator 1 complex subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1970
Score = 37.4 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W +PG V+ +A L E V W L +
Sbjct: 1155 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAP-----MKALVRERVQDWRRRLAMPLGLK 1209
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + + I + + + R++ G+ + II DE
Sbjct: 1210 LVELTGDNTPDTRTIRNADIIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1260
>gi|119180556|ref|XP_001241737.1| hypothetical protein CIMG_08900 [Coccidioides immitis RS]
Length = 1970
Score = 37.4 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W +PG V+ +A L E V W L +
Sbjct: 1155 SPTGSGKTVAAELAMWWAFREKPGSKVVYIAP-----MKALVRERVQDWRRRLAMPLGLK 1209
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + + I + + + R++ G+ + II DE
Sbjct: 1210 LVELTGDNTPDTRTIRNADIIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1260
>gi|171058461|ref|YP_001790810.1| exodeoxyribonuclease V subunit alpha [Leptothrix cholodnii SP-6]
gi|170775906|gb|ACB34045.1| exodeoxyribonuclease V, alpha subunit [Leptothrix cholodnii SP-6]
Length = 739
Score = 37.4 bits (85), Expect = 5.3, Method: Composition-based stats.
Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 28/162 (17%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F P + S I+ G G GKT A L+ +M+ P
Sbjct: 235 FGGPPA-------PDRFDWQRSACAIALRGRLALITGGPGTGKTYTVARLLALVMAVHPQ 287
Query: 108 I---SVICLANSET---QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
+ A + +LK ++ + + + + LP + + L + +L
Sbjct: 288 PQALRIALAAPTGKAAARLKQSIDSALQQLAAALPGALDWGLLQQRLSQSLTLHKLLGAR 347
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
D++ + R H ++ DEAS
Sbjct: 348 P--DTRRFGRDAR-------------HPLEVDLLVVDEASMV 374
>gi|331086511|ref|ZP_08335590.1| hypothetical protein HMPREF0987_01893 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410569|gb|EGG89997.1| hypothetical protein HMPREF0987_01893 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 649
Score = 37.4 bits (85), Expect = 5.3, Method: Composition-based stats.
Identities = 44/297 (14%), Positives = 86/297 (28%), Gaps = 58/297 (19%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQ---SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
+ L W EV +W+ + K + ++P + C
Sbjct: 344 QGHLFAKSWNEVERWVEAIIEKGDPIQKERVERVIYPERFEHSFEEMMFTRKE------C 397
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
R + G + + G D+ GI +T + P
Sbjct: 398 RLSIYHLDENGTGR---DQLFV------GMEDLQEKGI--TITADQYRCVYSSLYLPNED 446
Query: 234 SGKFYEIFN-KPLDDWKRFQIDTRTVEGID------------------PSFHEGIIARYG 274
Y IFN P D+K + V ++ P F E G
Sbjct: 447 MNAVYSIFNDDPPADYKAHSLSVSDVVIMNQNGDMKAYFVDRFGFQELPDFVEERKKILG 506
Query: 275 LDSDVTRVEVC-------------GQFP-QQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
++SD+ + ++ +FP ++ + L EA + P +
Sbjct: 507 MESDIQKKDILEQTSCISFYAAECSEFPVLGEVHHDLTLPEALEAYEKIPAERMNGLKSV 566
Query: 321 GCDIAEEGG-----DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
G ++ E G D V + +++ + + + L K + +P +
Sbjct: 567 GFNLQEGGDYDGMMDLMVAGRSQREILDSIPFYRENKLVQEALKRVEQYIEEKPLNV 623
>gi|295688413|ref|YP_003592106.1| hypothetical protein Cseg_0983 [Caulobacter segnis ATCC 21756]
gi|295430316|gb|ADG09488.1| protein of unknown function DUF264 [Caulobacter segnis ATCC 21756]
Length = 445
Score = 37.4 bits (85), Expect = 5.9, Method: Composition-based stats.
Identities = 71/442 (16%), Positives = 127/442 (28%), Gaps = 82/442 (18%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLA 114
L + + + H L + +F GRG GKT A WL+ G + +
Sbjct: 53 LRTLRIREDHQLPPPDPWVTWLFL----GGRGAGKTYAGAA---WLIEQATAGARLALVG 105
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ ++ + + + SL W +
Sbjct: 106 PTFHDVREVM----------IEGPSGLKALSLPDEHPRWEASRRRLVWPN-----GATAY 150
Query: 175 TYSEERPDTFVG--HHNTYGMAIINDEASGTPDVINL-GILGFLTERNANRFWIMTSNPR 231
+S E PD+ G H DE P + +L F A+ ++T+ P
Sbjct: 151 AFSAEDPDSLRGPQFHAA-----WADEFCAWPKPGDTLAMLRFGLRLGADPRLVVTTTP- 204
Query: 232 RLSGKFYEIFNKPLDDWKRFQID------TRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
+ + + + P+F + + YG + E+
Sbjct: 205 -------KPHRALKVLMAEPGVSLTRAGTSANAGNLAPAFLRTLESLYGGT-RLAAQELD 256
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI-AEEGGDNT--VVVLRRGPVI 342
G + + P +++ D A GGD VVV RR
Sbjct: 257 GVIVE-TDGGLFRAEDLARCRA--ARPARLDRVVVAVDPPATAGGDACGIVVVGRRDDRA 313
Query: 343 EHLFD--WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG----YHVYR 396
L D + + DA++ +AN G L + R
Sbjct: 314 FVLADETARGLSPAGWAARAVAAARAWSADALVAEANQGGDMVRSVLAQADPPCRVKLVR 373
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIE 456
KRA R E +A E +++ + + + +G+L
Sbjct: 374 ASVGKRA---------RAE---PVAALYEQGRVLHCGSFVALE---EELMALGSGDLE-- 416
Query: 457 SKRVKGAKSTDYSDGLMYTFAE 478
S D +D L++ +E
Sbjct: 417 -------HSPDRADALVWAVSE 431
>gi|94694803|gb|ABF47048.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694815|gb|ABF47054.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694825|gb|ABF47059.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694853|gb|ABF47073.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694857|gb|ABF47075.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|222354519|gb|ACM48067.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|239909445|gb|ACS32392.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
Length = 674
Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|94694837|gb|ABF47065.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
Length = 674
Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|94694821|gb|ABF47057.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694847|gb|ABF47070.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|219879683|gb|ACL51158.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
Length = 674
Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|94694819|gb|ABF47056.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694829|gb|ABF47061.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
Length = 674
Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|94694807|gb|ABF47050.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694809|gb|ABF47051.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694823|gb|ABF47058.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694839|gb|ABF47066.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|242345696|gb|ACS92014.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|256557083|gb|ACU83739.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
Length = 674
Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|94694817|gb|ABF47055.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
Length = 674
Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|94694827|gb|ABF47060.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
Length = 674
Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|94694841|gb|ABF47067.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
Length = 674
Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|94694813|gb|ABF47053.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|254770949|gb|ACT81760.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
Length = 674
Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|94694843|gb|ABF47068.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
Length = 674
Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|52139262|ref|YP_081537.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|39842097|gb|AAR31641.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|44903295|gb|AAS48974.1| UL89 [Human herpesvirus 5]
gi|94694805|gb|ABF47049.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694811|gb|ABF47052.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694845|gb|ABF47069.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694849|gb|ABF47071.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694851|gb|ABF47072.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|94694855|gb|ABF47074.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
gi|157780097|gb|ABV71611.1| UL89 [Human herpesvirus 5]
gi|242345862|gb|ACS92179.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|242554146|gb|ACS93421.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|254771115|gb|ACT81925.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|270311455|gb|ACZ72832.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|270355676|gb|ACZ79836.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|270355841|gb|ACZ80000.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|270356007|gb|ACZ80165.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|270356173|gb|ACZ80330.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|290564434|gb|ADD39135.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|294488421|gb|ADE88081.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
gi|317160580|gb|ADV04406.1| DNA packaging terminase subunit 1 [Human herpesvirus 5]
Length = 674
Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGAKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|262043664|ref|ZP_06016773.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039002|gb|EEW40164.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 464
Score = 37.4 bits (85), Expect = 6.4, Method: Composition-based stats.
Identities = 31/252 (12%), Positives = 72/252 (28%), Gaps = 39/252 (15%)
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
Q++ +W V+ + ++ +L +
Sbjct: 65 PQANQVRKAIWKAVN------------PRTGRLRIDEAFPHELRRKTLDNEMMIEFINGS 112
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
T+ D + + + I+ E + + + L + F++ S PR +
Sbjct: 113 TWQAVGSDNYGALIGSGHVGIVFSEWALSNPSAWAFLRPILADNGGWAFFV--STPRGKN 170
Query: 235 GKFYEIFN---KPLDDWKRFQIDTRTVEGIDPS----FHEGIIARYGLDS--DVTRVEVC 285
FY++F K D+W + I P + A G + + E
Sbjct: 171 -HFYKMFQGGLKDPDNWFCDHLSADITLHIPPETLAQELREMQAERGEEEGQALFNQEYM 229
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYAP-------LIMGCDIAEEGGDNTVVVLRR 338
+ ++ ++ + P+ P +G GD T + +
Sbjct: 230 CDWNAAIPGAYYSSILVGLEKGGQIGNVPWDPQYEVYTSWDLGI------GDATAIWFYQ 283
Query: 339 --GPVIEHLFDW 348
G + + +
Sbjct: 284 FIGKEVRVIDYY 295
>gi|321265233|ref|XP_003197333.1| member of the DEAH family of helicases; Mph1p [Cryptococcus gattii
WM276]
gi|317463812|gb|ADV25546.1| Member of the DEAH family of helicases, putative; Mph1p
[Cryptococcus gattii WM276]
Length = 1517
Score = 37.0 bits (84), Expect = 6.6, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 55/156 (35%), Gaps = 12/156 (7%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
++ G+GKT + ++L P ++ LA + + + E + +P++
Sbjct: 299 TLVALPTGLGKTFVAGVVMLNFYRWFPTGKIVFLAPTRPLVAQQI--EACQLSCGIPSRD 356
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
M + L + + + +T + + V + ++ DE
Sbjct: 357 AAVMTGEGG------ARKGRERLWEEKRVFYCTPQTLDNDLKNGAVDP--QDIVLVVLDE 408
Query: 200 A-SGTPDVINLGILGFLTERNAN-RFWIMTSNPRRL 233
A T + I+ +LT + R +T+ P
Sbjct: 409 AHKATGNYAYTTIVAYLTAHHPYFRVLALTATPGAD 444
>gi|119716507|ref|YP_923472.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
gi|119537168|gb|ABL81785.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
Length = 558
Score = 37.0 bits (84), Expect = 6.7, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 20/105 (19%)
Query: 38 WGEKGTPLEGFSAP---------RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGI 88
W P R +QLE E + N V G+
Sbjct: 117 WAGPTLEAIYAKMPARVPSKYELRPYQLEAAERIQQDL--EDTNRALLVLAT------GL 168
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSE---TQLKTTLWAEVSK 130
GKT + ++ + + P ++ +A+ + QL+ LW + K
Sbjct: 169 GKTVVGGEVIRRHLESHPDARILVVAHMKELVEQLEKALWRHLDK 213
>gi|170086129|ref|XP_001874288.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651840|gb|EDR16080.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1307
Score = 37.0 bits (84), Expect = 6.9, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
++ G+GKT + ++L P V+ +A ++ + + A
Sbjct: 224 TLVALPTGLGKTFIAGAVMLNFYRWFPEGKVVFVAPTKPLVAQQIMA 270
>gi|260811155|ref|XP_002600288.1| hypothetical protein BRAFLDRAFT_118278 [Branchiostoma floridae]
gi|229285574|gb|EEN56300.1| hypothetical protein BRAFLDRAFT_118278 [Branchiostoma floridae]
Length = 275
Score = 37.0 bits (84), Expect = 6.9, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 18/129 (13%)
Query: 188 HNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
H+ + DE + G+L L E +N +I + +L P+
Sbjct: 48 HSDRQHLFVFDEMETVYPSLAEGLLSLLEEDTSNTMFIFIWSTEKL----------PMGR 97
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
+ QI I + +++++V + +F A
Sbjct: 98 YLLQQIS--------KGRSRESIREEEIQDLLSQLQVDTDSSEPSSTNFASTGKTFAATV 149
Query: 308 REPCPDPYA 316
++P P
Sbjct: 150 KKPSNIPEG 158
>gi|71018359|ref|XP_759410.1| hypothetical protein UM03263.1 [Ustilago maydis 521]
gi|46098957|gb|EAK84190.1| hypothetical protein UM03263.1 [Ustilago maydis 521]
Length = 1054
Score = 37.0 bits (84), Expect = 6.9, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 12/151 (7%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA-EVSKWLS-LLPNKHWFEMQ 144
G+GKT ++ LM + + +A + + W E+ ++ L W
Sbjct: 468 GMGKT----IQMISLMLSDRKKPCLVVAPT---VAIMQWRNEIEQYTEPKLKVLMWHGAN 520
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP--DTFVGHHNTYGMAIINDEASG 202
+DV+ S + + + + H + II DEA
Sbjct: 521 RTQDLKELKAADVVLTSYAVLESSFRKQESGFRRKNEILKERSALHAVHWRRIILDEAHN 580
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ G + + W ++ P +
Sbjct: 581 IKERSTNTAKGAFALQG-DFRWCLSGTPLQN 610
>gi|94694835|gb|ABF47064.1| DNA cleavage and packaging protein large subunit [Human herpesvirus
5]
Length = 674
Score = 37.0 bits (84), Expect = 7.0, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ ID + + S ++ G ++ DEA ILGFL +
Sbjct: 275 VISIDHRGPKSTALFASCYNTNSIRG---QNFHLLLVDEAHFIKKEAFNTILGFLAQNTT 331
Query: 221 NRFWIMTSNPRRLSGKF 237
+I ++N + F
Sbjct: 332 KIIFISSTNTTSDATCF 348
>gi|49475696|ref|YP_033737.1| Phage related protein [Bartonella henselae str. Houston-1]
gi|49238503|emb|CAF27734.1| Phage related protein [Bartonella henselae str. Houston-1]
Length = 441
Score = 37.0 bits (84), Expect = 7.1, Method: Composition-based stats.
Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 17/186 (9%)
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNA--NRFWIMTSNPRRLSGKFYEIFN-KPLDD 247
+ DEA + ++ L E +T NP R + F +
Sbjct: 122 RILLCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRDNAPVERRFRFSNNEA 181
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE--- 304
KR +I+ +E + + + G + ++ ++
Sbjct: 182 IKRVEINWSDNPKFPKILNEARLDDLKNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQE 241
Query: 305 ----ALNREPCPDPYAPLIMGCDIAEEG--GDNTVVVLRR-GPVIEHLFDWSKTDLRTTN 357
+ R+P A DI G D T + + + + D+ + + +
Sbjct: 242 GRIGRVARDPLMQMRAFW----DIGGTGAKADATAIWIAQFVGREIRVLDYYEAQGQPLS 297
Query: 358 NKISGL 363
I L
Sbjct: 298 EHIGWL 303
>gi|29826538|ref|NP_828844.1| putative helicase [Streptomyces avermitilis MA-4680]
gi|29611336|dbj|BAC75379.1| putative helicase [Streptomyces avermitilis MA-4680]
Length = 885
Score = 37.0 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 71 NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
++ P+ +G I + G GKT A + G ++ + L
Sbjct: 27 SSVPPQGARGTIVSATGSGKTFTAAACA---LECFSGGRILVTVPTLDLL 73
>gi|312880761|ref|ZP_07740561.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
gi|310784052|gb|EFQ24450.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
Length = 1200
Score = 37.0 bits (84), Expect = 7.8, Method: Composition-based stats.
Identities = 29/231 (12%), Positives = 60/231 (25%), Gaps = 33/231 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
W + + V +P V + AG G GKT + WL+++ P V
Sbjct: 11 PWMERLLGDLRPEQRQGVISPRSLVV---VQAGAGTGKTHTLSSRFAWLLASDPTCRV-- 65
Query: 113 LANSETQLKTTLWAE-VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
Q+ T + E ++ + + L P L + + Y +
Sbjct: 66 -----EQILTLTFTEKAAREMRDRIRCRLLQW----LEAEPEKLGHLRDAAARIDEGYIS 116
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV-----INLGILGFLTERNANRFWIM 226
++ G+ + D S + + G + F +
Sbjct: 117 TLHAFALRVI-------RESGLVLDLDPESRIASPCGEGALFEEMEGAFDRLDPAWFLRL 169
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
+P + + D ++ +G
Sbjct: 170 LEDP------WRDRCQDLFGDPAFPRLVNALSPRRLAELVREAAELHGSRD 214
>gi|321472411|gb|EFX83381.1| hypothetical protein DAPPUDRAFT_48010 [Daphnia pulex]
Length = 657
Score = 37.0 bits (84), Expect = 7.9, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 52/168 (30%), Gaps = 29/168 (17%)
Query: 36 FPWGEKGTPLEGFSAP-RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLN 94
F G T + P R +Q + +E H ++ G+GKT +
Sbjct: 93 FDMGAGDTWFYPTNKPVRKYQRDIVETCLFH-------------NTLVTLPTGLGKTFIA 139
Query: 95 AWLVLWLMSTRPGISVICLANSETQLKTTLWA--EVSKWLSLLPNKHWFEMQSLSLHPAP 152
A ++ P +I +A ++ + + A E+ L L S +
Sbjct: 140 AVVMYNFFRWYPRGKIIFMAPTKPLVAQQIQACYEIMG-LPLDSTSEMTGAMSPADRKTQ 198
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
W + + + + + + + ++ DEA
Sbjct: 199 WREKRV----------FFLTPQILTND--ISRAAFPASEIKCLVLDEA 234
>gi|319408093|emb|CBI81746.1| phage related protein [Bartonella schoenbuchensis R1]
gi|319408856|emb|CBI82513.1| phage related protein [Bartonella schoenbuchensis R1]
Length = 444
Score = 37.0 bits (84), Expect = 8.2, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 9/182 (4%)
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNA--NRFWIMTSNPRRLSGKFYEIFNKPLDD- 247
+ DEA + ++ L E +T NP R + F D
Sbjct: 125 RILLCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRENAPVERRFRFTKDQN 184
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EE 304
K +++ + + G + + ++ ++ +E
Sbjct: 185 IKGVEVNWSDNPLFPQKLQRVRLDDLQNRPESYNHIWEGDYLKAVQGAYFQKEMLAAEQE 244
Query: 305 ALNREPCPDPYAPLIMGCDIAEEG--GDNTVVVLRR-GPVIEHLFDWSKTDLRTTNNKIS 361
DP P+ DI G D T + + + + D+ + + + I
Sbjct: 245 GRVGRVARDPLMPIRAFWDIGGTGAKADATAIWIAQFVGREIRVLDYYEAQGQPLSEHIG 304
Query: 362 GL 363
L
Sbjct: 305 WL 306
>gi|322707444|gb|EFY99022.1| activating signal cointegrator 1 complex subunit 3 [Metarhizium
anisopliae ARSEF 23]
Length = 1969
Score = 37.0 bits (84), Expect = 8.3, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RP V+ +A L E V W L +
Sbjct: 1159 SPTGSGKTVAAELAMWWAFRERPKSKVVYIAP-----MKALVRERVKDWGKRLAQPLGLK 1213
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + II DE
Sbjct: 1214 IVELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1264
>gi|322695748|gb|EFY87551.1| activating signal cointegrator 1 complex subunit 3 [Metarhizium
acridum CQMa 102]
Length = 1950
Score = 37.0 bits (84), Expect = 8.3, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 14/118 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWFE 142
+ G GKT + W RP V+ +A L E V W L +
Sbjct: 1140 SPTGSGKTVAAELAMWWAFRERPKSKVVYIAP-----MKALVRERVKDWGKRLAQPLGLK 1194
Query: 143 MQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ L+ P + + I + + + R++ G+ + II DE
Sbjct: 1195 IVELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQT------RGYVRQVSLVII-DE 1245
>gi|224586602|ref|YP_002640499.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
gi|224497136|gb|ACN52769.1| phage terminase, large subunit, pbsx family [Borrelia valaisiana
VS116]
Length = 450
Score = 36.6 bits (83), Expect = 9.0, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
Y ++ F + I +EA+ +L L R I +NP
Sbjct: 148 YGGDKASDFERFRGSNSALIFVNEATTLHKQTLEEVLKRL--RCGQETIIFDTNPDNPEH 205
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDID 294
F + + + + T + F E Y D + V G++
Sbjct: 206 YFKTDYIDNIHTFTTYNFTTYDNVLLSKGFIETQEKLY-KDIPTYKARVLLGEWIASIDS 264
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL 336
F +NI ++ + P I D A GGDNT + +
Sbjct: 265 IFTQINITQDYVFSSP--------IAYLDPAFSVGGDNTALCV 299
>gi|71065561|ref|YP_264288.1| PBSX family phage terminase large subunit [Psychrobacter arcticus
273-4]
gi|71038546|gb|AAZ18854.1| phage terminase, large subunit, PBSX family [Psychrobacter arcticus
273-4]
Length = 421
Score = 36.6 bits (83), Expect = 9.0, Method: Composition-based stats.
Identities = 27/195 (13%), Positives = 55/195 (28%), Gaps = 11/195 (5%)
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS--EERPDTFVGHHNTY 191
N+ E ++ W +D + ++ D+ G +
Sbjct: 72 NSLNESSLEEIKQAIKSVSWLNDYYEIGEKYIRTKNRRVAYAFTGLRHNLDSIKGK--SR 129
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+ DEA + +L + E ++ WI T NP + F + ++
Sbjct: 130 ILLAWVDEAENVSEAAWRKLLPTVREDDSE-VWI-TWNPENKGSATDKRFRQVEHEFI-V 186
Query: 252 QIDTRTVEGIDPSFH-EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+++ E + + LD R G + + + R P
Sbjct: 187 EMNHNDNPFFPDVLEQERLNDQENLDDATYRWIWEGAYLEASDAQIFNGKFVVREFERHP 246
Query: 311 CPDPYAPLIMGCDIA 325
+ P G D
Sbjct: 247 TWN--GPYN-GLDFG 258
>gi|308476267|ref|XP_003100350.1| hypothetical protein CRE_22485 [Caenorhabditis remanei]
gi|308265092|gb|EFP09045.1| hypothetical protein CRE_22485 [Caenorhabditis remanei]
Length = 1870
Score = 36.6 bits (83), Expect = 9.3, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 15/144 (10%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
++ + A S+ + + A G GKT + L+ PG+ V+ +A
Sbjct: 1031 DYFNPIQAQVFYSLYKTDKSAL---VGAPTGSGKTLCAELAMFRLLQDHPGMKVVYIAP- 1086
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI-DSKHYSTMCRT 175
LK+ + V W N + + +S P ++ S+ I + + + R+
Sbjct: 1087 ---LKSLVRERVDDWKQKFENGMGYRVVEVSGDVTPDPQELQASSILITTPEKWDGISRS 1143
Query: 176 YSEERPDTFVGHHNTYGMAIINDE 199
++ VG I+ DE
Sbjct: 1144 WATREYVRRVG-------LIVLDE 1160
>gi|312116003|ref|YP_004013599.1| hypothetical protein Rvan_3315 [Rhodomicrobium vannielii ATCC
17100]
gi|311221132|gb|ADP72500.1| hypothetical protein Rvan_3315 [Rhodomicrobium vannielii ATCC
17100]
Length = 466
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 72/420 (17%), Positives = 129/420 (30%), Gaps = 57/420 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I AGRG GKT A W+ + G A + + L AE + + +
Sbjct: 61 ILAGRGAGKTRTGA---EWVRACVCGP-TPLSAGRYS--RFALVAETAADARDVIVEGPS 114
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ L++HP + S + + Y+ PD G + A DE +
Sbjct: 115 GL--LAIHPRGFRP-KFEPSKRRLTWPNGAVAMLYNATEPDQLRGPQHD---AAWCDELA 168
Query: 202 G--TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
+ L + R I+T+ P R E K + T
Sbjct: 169 KWRYARETWDMLQFGLRLGHDPRQ-IVTTTP-RPIAIIREFLGKEGHGVVLTRGSTYDNR 226
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE-ALNREPCPDPYAPL 318
+ I R + + R E+ + + +++++ + R + +
Sbjct: 227 ANLAQNYFNTIVRSYEGTRLGRQEINAELLDDVAGALWTRSLLDQHRIARGTPLPRFDRV 286
Query: 319 IMGCDIAE---EGGDNT------VVVLRRGPVIEHLFDW-SKTDLRTTNNKISGLVEKYR 368
++G D A GD T V L L D ++ K + Y
Sbjct: 287 VVGIDPAARPSGAGDKTSETGIVVCGLGEDGRGYVLDDLSNRQGPMGWAQKAVAGFDLYE 346
Query: 369 PDAIIIDANNTGARTCDYLEML--GYHVYRVLGQKRAVDLEFCRNRRTE----LHVKMAD 422
DA++++ N GA L + G + V + R E L+ +
Sbjct: 347 ADALVVEINQGGAMVETVLRAVRGGLPIRAVRATRGKT-------VRAEPIAALYAQGR- 398
Query: 423 WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPR 482
+ + L + F + G + D D L++ A+ PR
Sbjct: 399 -VSHVGALP--TLEDQMVQFTPFGIEGDG-------------AADRVDALVWALADLFPR 442
>gi|302756859|ref|XP_002961853.1| hypothetical protein SELMODRAFT_140315 [Selaginella moellendorffii]
gi|300170512|gb|EFJ37113.1| hypothetical protein SELMODRAFT_140315 [Selaginella moellendorffii]
Length = 1015
Score = 36.6 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 24/211 (11%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
A++A RG GK+ + ++ A S LKT L+ V K L K
Sbjct: 279 VALTASRGRGKSAALGLAIA-GAVAFGYSNIFVTAPSPENLKT-LFEFVCKGFDALEYKE 336
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT--YGMAIIN 197
+ + + V+ ++ + +T +P H +I
Sbjct: 337 HIDYDLVQSTNPAFNKAVVRVNIFRQHR------QTIQYIQPQD----HAKLAQAELLII 386
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
DEA+ P + +LG M S G + K + + Q + +
Sbjct: 387 DEAAAIPLPMVKALLG-------PYLVFMCSTVNGYEGTGRSLSLKLIQQLRS-QGKSES 438
Query: 258 VEGIDPSFHEGIIARYGLDSDV--TRVEVCG 286
+ RYG + E+
Sbjct: 439 APSVFREVELAEPIRYGAGDPIEGWLHELLC 469
>gi|302798078|ref|XP_002980799.1| hypothetical protein SELMODRAFT_113365 [Selaginella moellendorffii]
gi|300151338|gb|EFJ17984.1| hypothetical protein SELMODRAFT_113365 [Selaginella moellendorffii]
Length = 1015
Score = 36.6 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 64/211 (30%), Gaps = 24/211 (11%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
A++A RG GK+ + ++ A S LKT L+ V K L K
Sbjct: 279 VALTASRGRGKSAALGLAIA-GAVAFGYSNIFVTAPSPENLKT-LFEFVCKGFDALEYKE 336
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT--YGMAIIN 197
+ + + V+ ++ + +T +P H +I
Sbjct: 337 HIDYDLVQSTNPAFNKAVVRVNIFRQHR------QTIQYIQPQD----HAKLAQAELLII 386
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
DEA+ P + +LG M S G + K + + Q + +
Sbjct: 387 DEAAAIPLPMVKALLG-------PYLVFMCSTVNGYEGTGRSLSLKLIQQLRS-QGKSES 438
Query: 258 VEGIDPSFHEGIIARYGLDSDV--TRVEVCG 286
+ RYG + E+
Sbjct: 439 APSVFREVELAEPIRYGAGDPIEGWLHELLC 469
>gi|281204972|gb|EFA79166.1| hypothetical protein PPL_07991 [Polysphondylium pallidum PN500]
Length = 1587
Score = 36.6 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 42/197 (21%), Positives = 63/197 (31%), Gaps = 21/197 (10%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI-----SVICLANSETQLKTTLW--AEVSKWLSL 134
+ G GKT A +VL +M T + A++ T + L AE+ K
Sbjct: 1071 VVGPPGTGKTHFLALMVLIIMETLIRAEKKSYIIAITAHTHTAIDNLLVRIAELKKEYES 1130
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
S H + D KH + S +G M
Sbjct: 1131 FAGNALNFQIVKKESSKLSESLTSHNIVKYDKKHKFNLMCIGSTCWGLNTLGL--DLDML 1188
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF--NKPLDDWKRFQ 252
II DEAS P + LG ++ +P++L F K L
Sbjct: 1189 II-DEASQLPSPL--AALGLNAVNLEKSRVVVVGDPKQLGPVLKASFIVRKDLSV----- 1240
Query: 253 IDTRTVEGIDPSFHEGI 269
+ +E +P FH+ I
Sbjct: 1241 --SDKLEHQEPKFHKSI 1255
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.308 0.130 0.353
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,114,867,950
Number of Sequences: 14124377
Number of extensions: 360134319
Number of successful extensions: 985041
Number of sequences better than 10.0: 1255
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 935
Number of HSP's that attempted gapping in prelim test: 982625
Number of HSP's gapped (non-prelim): 1549
length of query: 511
length of database: 4,842,793,630
effective HSP length: 144
effective length of query: 367
effective length of database: 2,808,883,342
effective search space: 1030860186514
effective search space used: 1030860186514
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 83 (36.6 bits)