BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781215|ref|YP_003065628.1| putative phage terminase,
large subunit [Candidatus Liberibacter asiaticus str. psy62]
(511 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040892|gb|ACT57688.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|317120680|gb|ADV02503.1| putative phage terminase large subunit [Liberibacter phage SC1]
gi|317120824|gb|ADV02645.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 511
Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats.
Identities = 511/511 (100%), Positives = 511/511 (100%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME
Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL
Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI
Sbjct: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM
Sbjct: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP
Sbjct: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
Query: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR 511
PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR
Sbjct: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEYDSR 511
>gi|315122902|ref|YP_004063391.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496304|gb|ADR52903.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats.
Identities = 373/508 (73%), Positives = 428/508 (84%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M+RELPT E EQ+L +LM+SD+IKLSF+NFVL FPW E T L FS PR WQL+FME
Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VD CL +V+NP+P++FKGA+SAGRGIGKTTLNAW++LWL+STRPG+S++CLANSETQL
Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K+TLWAEVSKWLS+LPNKHWFEMQSLSLHPA WY++ L + GIDSKHY+ CRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAI NDEASGTPDVIN ILGF TE NANRFW+MTSNPRRL+G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLNGWFYDI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FN PL+DW+RFQIDTRTVEGIDP+FHE IIARYGLDSDVTRVEV GQFPQQDI+SFIP
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPNFHENIIARYGLDSDVTRVEVLGQFPQQDINSFIPFY 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
IEEALNREP DPYAPL+MGCDIA EGGDNTVVVLRRG IEH+FDWS + ++ KI
Sbjct: 301 RIEEALNREPIKDPYAPLVMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNVSSRKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
L+ KY+PDA+++DAN G +T YL GY V+ GQ RA D E RNRRTELHVKM
Sbjct: 361 EELINKYKPDAVVVDANGIGVQTYYYLADEGYSVHPEKGQNRADDHESYRNRRTELHVKM 420
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
A+WLE AS+ +HSGLIQNLKSL+SFI PNTG+LA+ESKRVKGA STDYSD L YTFA +P
Sbjct: 421 AEWLELASIPHHSGLIQNLKSLESFIEPNTGKLALESKRVKGAVSTDYSDALAYTFAVSP 480
Query: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEY 508
RSDM+FGRC SYQYE +LL++RRF Y
Sbjct: 481 ARSDMNFGRCRSYQYEADELLVDRRFSY 508
>gi|317120722|gb|ADV02544.1| putative phage terminase large subunit [Liberibacter phage SC2]
gi|317120783|gb|ADV02604.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 516
Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats.
Identities = 391/507 (77%), Positives = 413/507 (81%), Gaps = 9/507 (1%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME
Sbjct: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL
Sbjct: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER
Sbjct: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI
Sbjct: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP
Sbjct: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPQQ 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
I EAL R PDPYAPLIMGCDIA EG D TVVVLRRG +IE +FDWS + TN KI
Sbjct: 301 YIVEALERVAIPDPYAPLIMGCDIAGEGEDKTVVVLRRGNIIERIFDWSGELIEVTNRKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEML-GYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
S L+ +Y PDAI+ID N G YL + V +LGQ+R+ + E N R EL+
Sbjct: 361 SSLINRYNPDAIVIDGNGIGGTVVSYLLNMHHISVEVILGQRRSTEPEQYHNLRAELYDL 420
Query: 420 MADWLEFASLINHS--GLIQNLKSLKSFIVPNTGELAIESKRV-K---GAKSTDYSDGLM 473
M + + LI LKS+KS G L IE KR + G +S D+ D L
Sbjct: 421 MRSAITGGLQLPDDCPDLINELKSIKSISDT-LGRLLIEKKRQGRSEFGVRSPDFVDALC 479
Query: 474 YTFAENPPRSD-MDFGRCPSYQYEGVD 499
YTFA +PPR D + +YE +D
Sbjct: 480 YTFAVDPPRKDNPLYQGQDISEYEALD 506
>gi|315121940|ref|YP_004062429.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495342|gb|ADR51941.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 509
Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats.
Identities = 376/508 (74%), Positives = 428/508 (84%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M+RELPT E EQ+L +LM+SD+IKLSF+NFVL FPW E T L FS PR WQL+FME
Sbjct: 1 MTRELPTKIEHEQELMELMFSDDIKLSFTNFVLRLFPWSEANTSLANFSRPRRWQLDFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VD CL +V+NP+P++FKGA+SAGRGIGKTTLNAW++LWL+STRPG+S++CLANSETQL
Sbjct: 61 AVDTDCLFNVDNPDPKIFKGAVSAGRGIGKTTLNAWMMLWLISTRPGMSILCLANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K+TLWAEVSKWLS+LPNKHWFEMQSLSLHPA WY++ L + GIDSKHY+ CRTYSEER
Sbjct: 121 KSTLWAEVSKWLSMLPNKHWFEMQSLSLHPAVWYAEALEKNFGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVGHHNTYGMAI NDEASGTPDVIN ILGF TE NANRFW+MTSNPRRL G FY+I
Sbjct: 181 PDTFVGHHNTYGMAIFNDEASGTPDVINTSILGFFTENNANRFWVMTSNPRRLKGWFYDI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FN PL+DW+RFQIDTRTVEGIDPSFHEGII+RYGLDSDVTRVEV GQFPQQDI+SFIP
Sbjct: 241 FNVPLEDWQRFQIDTRTVEGIDPSFHEGIISRYGLDSDVTRVEVLGQFPQQDINSFIPFY 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
IEEALNREP DPYAPLIMGCDIA EGGDNTVVVLRRG IEH+FDWS + ++ KI
Sbjct: 301 RIEEALNREPIKDPYAPLIMGCDIAGEGGDNTVVVLRRGTNIEHIFDWSGLAVNASSRKI 360
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
L+ KY+PDA+++DAN G +T YL GY V+ GQ RA D E RNRRTELHVKM
Sbjct: 361 EELINKYKPDAVVVDANGIGVQTYYYLADEGYSVHAEKGQNRADDHESYRNRRTELHVKM 420
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
A+WLE AS+ NHSGLIQNLKSL+SFI PNTG+LA+ESKRVKGA STDYSD L YTFA +P
Sbjct: 421 AEWLELASIPNHSGLIQNLKSLESFIEPNTGKLALESKRVKGAVSTDYSDALAYTFAVSP 480
Query: 481 PRSDMDFGRCPSYQYEGVDLLIERRFEY 508
RSDM+FGRC SYQYE +LL++RRF Y
Sbjct: 481 ARSDMNFGRCRSYQYEADELLVDRRFSY 508
>gi|303328395|ref|ZP_07358832.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
gi|302861389|gb|EFL84326.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
Length = 500
Score = 383 bits (982), Expect = e-104, Method: Composition-based stats.
Identities = 148/490 (30%), Positives = 214/490 (43%), Gaps = 28/490 (5%)
Query: 25 KLSFSNFVLHFFPWGEKGTPLEGF-SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAIS 83
FVL FPWG G L + P WQ E + + V + A+S
Sbjct: 26 AADPLGFVLFAFPWG--GGALADYPDGPDVWQREILRGMGEQLSTGA--SAASVIREAVS 81
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+G G+GK+ L AW++LW MST + AN+E QLK WAE++KW L +WF+
Sbjct: 82 SGHGVGKSALVAWIILWAMSTFSDTRGVVTANTENQLKGKTWAELAKWHRLCLCGYWFDC 141
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASG 202
+ +L K + +SE + F G HN + +I DEAS
Sbjct: 142 TATALISTQ----------AGHEKTWRVDMVAWSERNTEAFAGLHNKGRRVLLIFDEASA 191
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
PD I G LT+ + W NP R +G+F E F + W ++D+RT D
Sbjct: 192 IPDAIWEVSEGALTDADTEIIWCCFGNPTRNTGRFRECFGRYAHRWNTRRVDSRTAAMTD 251
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY--APLIM 320
+ + YG DSD RV V G+FP+ FI +I+ EA R PD Y AP I+
Sbjct: 252 KNQLAQWVEDYGEDSDFVRVRVRGEFPRAGDRQFISSDIVHEARGRSLKPDQYSFAPRIL 311
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A G D +V+ R+G + D T ++ ++ D I +D G
Sbjct: 312 GVDVARSGSDQSVITRRQGLACLEQRKFRGLDTVTLAGIVAEECREWGADKIFVDGIGVG 371
Query: 381 ARTCDYLEM---LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL-EFASLINHSGLI 436
A D L LG+ V + A+ E NRR E+ M WL E ++ + + L
Sbjct: 372 AGVVDALRQVYGLGHLVVDAVAGATALQPERFLNRRAEMWTAMRKWLAEGGAVPDDAELA 431
Query: 437 QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
+ L L+ + V +G+L +ESK + +G S D +D L TF P + G
Sbjct: 432 EQLCGLE-YAVTVSGKLKLESKDDMKARGLTSPDCADALALTFYAPVPVTL--HGAAQRK 488
Query: 494 QYEGVDLLIE 503
DL E
Sbjct: 489 ARTEYDLFGE 498
>gi|212710820|ref|ZP_03318948.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
30120]
gi|212686517|gb|EEB46045.1| hypothetical protein PROVALCAL_01888 [Providencia alcalifaciens DSM
30120]
Length = 493
Score = 378 bits (971), Expect = e-103, Method: Composition-based stats.
Identities = 144/495 (29%), Positives = 222/495 (44%), Gaps = 26/495 (5%)
Query: 6 PTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAH 65
+PE EQ + D+ ++ L+ FPWGE GT LE S PR WQ E + + H
Sbjct: 4 TMSPE-EQLINDIGMFTH---DPLSYALYAFPWGEAGTELENASGPRQWQAEALNEIGEH 59
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
N P + A ++G GIGK+ + ++ W M T V+ AN+E QL+T W
Sbjct: 60 LRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTKTW 117
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E++KW L K WF +++ + + +SE + F
Sbjct: 118 PEIAKWQRLSITKDWFTCTKTAIYSNDPNH----------ANAWRADAVPWSENNTEAFA 167
Query: 186 GHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G HN + ++ DEAS D++ G LT+ N WI NP R +G+F E F K
Sbjct: 168 GLHNQGKRIILVFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFRKF 227
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
WK QID+RTVEG + E I YG+D D +V V G FP FIP + +
Sbjct: 228 KHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLTDA 287
Query: 305 ALNREPCPDP--YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKIS 361
A+ R +AP+I+G D A G D+ V+ LR+G + L+ SK D +I+
Sbjct: 288 AMKRTVTQAEVSHAPIILGVDPAYSGDDDAVIYLRQGLHSKCLWTGSKTIDDVIMAKRIA 347
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
++Y DA+ ID G G + V + D + +N+R E++ +
Sbjct: 348 DYEDQYGADAVHID-FGYGTGIQSVGMNWGRNWQLVSFNGASTDPQM-QNKRGEMYNNVK 405
Query: 422 DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAE 478
WL+ I+ + +L S + V +G++ +E K + + +S + D L TFA
Sbjct: 406 SWLKIGGAIDDQEVADDL-STPEYKVQLSGKILLEKKEDIKKRIGRSPNKGDALALTFAY 464
Query: 479 NPPRSDMDFGRCPSY 493
+ + S
Sbjct: 465 PVTKKERHNISTSSQ 479
>gi|227355862|ref|ZP_03840255.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
gi|227164181|gb|EEI49078.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
Length = 494
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 139/499 (27%), Positives = 217/499 (43%), Gaps = 25/499 (5%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MS L +PE EQ + D+ + + FPWGE G LE ++ PR WQ E +
Sbjct: 1 MSEALQKSPE-EQLIEDIASFTH---DPLGYAYYAFPWGEAGGELEEYNGPRQWQAEALN 56
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ H N P + A ++G GIGK+ + ++ W M T V+ AN+E QL
Sbjct: 57 EIGEHLRNPKTRHQPLLL--ARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQL 114
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+T W E++KW L +WF +++ + + +SE
Sbjct: 115 RTKTWPEIAKWQRLSLTNNWFTCTKTAIYSNDPNH----------ANAWRADAVPWSENN 164
Query: 181 PDTFVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
+ F G HN + ++ DEAS D++ G LT+ WI NP R +G+F E
Sbjct: 165 TEAFAGLHNKGKRIILVFDEASNIADLVWEVAEGALTDEGTEIIWIAFGNPTRNTGRFRE 224
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
F K W QID+RTVEG + + YG DSD +V V G FP FIP
Sbjct: 225 CFRKFKHRWNTKQIDSRTVEGSNKEQIKNWEEDYGEDSDFFKVRVRGVFPSASELQFIPT 284
Query: 300 NIIEEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTT 356
+ +EA+ R +AP+I+G D A G D+ V+ LR+G + L+ K TD
Sbjct: 285 GLTDEAMKRIVTQAEVAHAPVIIGVDPAYSGIDDAVIYLRQGLFSKCLWTGFKTTDDVVM 344
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
+I+ ++Y+ DA+ ID G G V + D + N+R E+
Sbjct: 345 AKRIADFEDQYKADAVHID-FGYGTGIHSIGTSWGRVWRLVKFGGASTDPQM-LNKRGEM 402
Query: 417 HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLM 473
+ + WL+ I+ +L + + ++ +E K + + +S D L
Sbjct: 403 YNSVKTWLKIGGAIDDQETADDLSCGEYKVRVIDSKIVLEDKTEIKKRLGRSPGKGDALA 462
Query: 474 YTFAENPPRSDMDFGRCPS 492
TFA + D ++ S
Sbjct: 463 LTFAYPVTKIDRNYSSPHS 481
>gi|167032754|ref|YP_001667985.1| putative phage terminase large subunit [Pseudomonas putida GB-1]
gi|166859242|gb|ABY97649.1| putative phage terminase, large subunit [Pseudomonas putida GB-1]
Length = 499
Score = 376 bits (964), Expect = e-102, Method: Composition-based stats.
Identities = 142/499 (28%), Positives = 226/499 (45%), Gaps = 29/499 (5%)
Query: 12 EQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVN 71
EQ+L + + S +VL+ FPWGE G L + PR WQ E +E +
Sbjct: 11 EQELANDIAS--FSDDPLGYVLYAFPWGEAGGELANKTGPRKWQREVLESIGEQLRAGA- 67
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
EV + A+++G GIGK+ L +W++ W + T + AN+E+QL+T W EV+KW
Sbjct: 68 KDRGEVIREAVASGHGIGKSALVSWVIKWALDTEVDTRGVVTANTESQLRTKTWPEVAKW 127
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L HWF++ +L + + +S+ + F G HN
Sbjct: 128 NRLSITAHWFKLTGTALISTDPDHEKN----------WRIDAVPWSDTNTEAFAGLHNEG 177
Query: 192 -GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
+ +I DEAS D++ G LT+ + W NP R SG+F E F K W+
Sbjct: 178 KRILLIFDEASAIADLVWEVAEGALTDADTEIIWAAFGNPTRNSGRFRECFTKFKHRWRH 237
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q+D+RTV+G + + IA YG DSD R+ V G FP+ IP + + EA+ R+
Sbjct: 238 RQVDSRTVDGTNKTQIAKWIADYGEDSDFVRIRVRGMFPRASDLQLIPTDWVAEAMRRDG 297
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW-----SKTDLRTTNNKISGLVE 365
L+ G DIA G DN V+ RRG + + + K+ LV
Sbjct: 298 VYGLDDALVCGIDIARGGMDNNVIRFRRGMDAKSIKPIKIPGSETRNTTPFIAKVCTLVV 357
Query: 366 KYRPDAIIIDANNTGARTCDYLEML--GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
++RPDA+ +D+ G D L L G + V +A D N RT + +M +
Sbjct: 358 EHRPDAVFVDSTGVGGPVADQLRRLLPGVMIIDVNFASQAPDR-HYANMRTYIWWRMREA 416
Query: 424 LEFA-SLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
++ ++ + + L L S + ++ ++A+E K + + S D D L TF
Sbjct: 417 IKLGLAIESDTELETELTS-PEYDHNSSDQIALEKKKDIKKRLGISPDDGDALALTFTMP 475
Query: 480 PPRSDM--DFGRCPSYQYE 496
++ + G S+Q +
Sbjct: 476 VMKAQYQGNGGVNGSHQSD 494
>gi|268589373|ref|ZP_06123594.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
gi|291315400|gb|EFE55853.1| conserved hypothetical protein [Providencia rettgeri DSM 1131]
Length = 493
Score = 375 bits (963), Expect = e-102, Method: Composition-based stats.
Identities = 145/488 (29%), Positives = 223/488 (45%), Gaps = 26/488 (5%)
Query: 6 PTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAH 65
+PE EQ + D+ ++ L+ FPWGE GT LE + PR WQ E + + H
Sbjct: 4 TMSPE-EQLINDIGMFTH---DPLSYALYAFPWGEAGTELENANGPRQWQAEALNEIGEH 59
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
N P + A ++G GIGK+ + ++ W M T V+ AN+E QL+T W
Sbjct: 60 LRNPETRHQP--LQLARASGHGIGKSAFISMIIKWGMDTCEDCKVVVTANTENQLRTKTW 117
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E++KW L K WF +++ + + +SE + F
Sbjct: 118 PEIAKWQRLSITKDWFTYTKTAIYSNDPNH----------ANAWRADAVPWSENNTEAFA 167
Query: 186 GHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G HN + +I DEAS D++ G LT+ N WI NP R +G+F E F K
Sbjct: 168 GLHNQGKRIILIFDEASNIADLVWEVAEGALTDENTEIIWIAFGNPTRNTGRFRECFRKF 227
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
WK QID+RTVEG + E I YG+D D +V V G FP FIP + +
Sbjct: 228 KHRWKTKQIDSRTVEGTNKEQIEKWIQDYGVDDDFVKVRVRGIFPSTSEKQFIPTGLTDA 287
Query: 305 ALNREPCPDP--YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKIS 361
A+ R +AP+I+G D A G D+ V+ LR+G + L+ SK D +I+
Sbjct: 288 AMKRTVTQAEVSHAPIIIGVDPAYSGDDDAVIYLRQGLHSKCLWTGSKTIDDVIMAKRIA 347
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
++Y DA+ ID G G + V + D + RN+R E++ +
Sbjct: 348 DFEDQYGADAVHID-FGYGTGIQSVGMNWGRNWQLVQFNGASTDPQM-RNKRGEMYNNVK 405
Query: 422 DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAE 478
WL+ I+ + ++L S + V +G++ +ESK + + +S D L TFA
Sbjct: 406 SWLKIGGAIDDQEVAEDL-STPEYKVELSGKILLESKDDIKKRIGRSPGKGDALALTFAY 464
Query: 479 NPPRSDMD 486
+ + +
Sbjct: 465 PVTKKERN 472
>gi|309702815|emb|CBJ02146.1| putative terminase, large subunit [Escherichia coli ETEC H10407]
Length = 493
Score = 368 bits (945), Expect = e-100, Method: Composition-based stats.
Identities = 135/504 (26%), Positives = 226/504 (44%), Gaps = 25/504 (4%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
+PE EQ + D+ + L+ FPWGE+GT L + PR WQ +
Sbjct: 1 MTAAAMSPE-EQLVEDIAGFTY---DPLGYALYAFPWGEEGTELAHATGPRKWQADAFRE 56
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+ H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+
Sbjct: 57 IRDHLQNPATRHQPIML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLR 114
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
T W E+ KW +L K WF + +++ D K + +SE
Sbjct: 115 TKTWPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNT 164
Query: 182 DTFVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
+ F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E
Sbjct: 165 EAFAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFREC 224
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
F K WK QID+RTVEG + + + YG DSD +V V G FP + FIP
Sbjct: 225 FRKYKHRWKCAQIDSRTVEGTNKEQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSG 284
Query: 301 IIEEALNREPCPD--PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTN 357
+ + A+ R P +A +++G D + +G D V+ LR+G + L +W + TD
Sbjct: 285 LTQPAVGRVITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEWQRTTDDVLFA 344
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
I+ ++Y+ DA+ ID G + G + ++ D E N+R E++
Sbjct: 345 KVIADFEDQYQADAVFIDY-GYGTGLKSVGDNWGRNWTLIMFGSGTADPEM-GNKRGEMY 402
Query: 418 VKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
D L+ + ++ L L + + + ++ K + +S + +D +
Sbjct: 403 KSARDALKLGAQLDSQELADELSAPEYKVRLKDSRKILQDKDEVKELLGRSPNNADAYVL 462
Query: 475 TFAENPPRSDMDFGRCPSYQYEGV 498
T+A + ++G+ S Q + +
Sbjct: 463 TYAAPVTKKQFNYGQQQSQQGKAL 486
>gi|215487825|ref|YP_002330256.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|215265897|emb|CAS10306.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
Length = 493
Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats.
Identities = 133/496 (26%), Positives = 223/496 (44%), Gaps = 23/496 (4%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNS 69
E++L + + S + L+ FPWGE GT L + PR WQ + + H N
Sbjct: 7 SPEEQLVEDIAS--FTYDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQNP 64
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E+
Sbjct: 65 ATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEII 122
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
KW +L K WF + +++ D K + +SE + F G HN
Sbjct: 123 KWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLHN 172
Query: 190 TY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ ++ DEAS D++ G LT+ + W+ NP R +G+F E F K W
Sbjct: 173 ERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRW 232
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
K QID+RTVEG + + + YG DSD +V V G FP + FIP + + A+ R
Sbjct: 233 KCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASENQFIPSGLTQPAVGR 292
Query: 309 EPCPD--PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVE 365
P +A +++G D + +G D V+ LR+G + L +W + TD I+ +
Sbjct: 293 VITPAQVQHAAVVLGVDPSHQGKDPAVIYLRQGLHCKKLGEWQRTTDDVLFAKIIADFED 352
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
+Y+ DA+ ID G + G + + D E N+R E++ D L+
Sbjct: 353 QYQADAVFIDY-GYGTGLKSVGDNWGRNWTLIQFGSGTADPEM-GNKRGEMYKSARDALK 410
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPR 482
+ ++ L L + + + ++ K + +S + +D + T+A +
Sbjct: 411 LGAQLDSQNLADELSAPEYKVRLKDSRKILQDKEEVKELLGRSPNDADAYVLTYAAPVTK 470
Query: 483 SDMDFGRCPSYQYEGV 498
++G+ S Q + +
Sbjct: 471 KQFNYGQQQSQQGKAL 486
>gi|323156136|gb|EFZ42295.1| terminase large subunit [Escherichia coli EPECa14]
Length = 491
Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats.
Identities = 139/497 (27%), Positives = 222/497 (44%), Gaps = 24/497 (4%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
T E++L + + + L+ FPWGE+GT L + PR WQ + +
Sbjct: 1 MTDTALSPEEQLIEDIAG--FTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A+++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPATRYQPLML--ALASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG DSD ++ V G FP FIP +
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R YAP+I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAAQVAYAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNS 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL +++ +L + + + V G++ IE K + + +S D L+ TF
Sbjct: 405 CKTWLRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDMDFGRCPSY 493
A + G+
Sbjct: 464 AFPVSKRLRLPGQQNQQ 480
>gi|282848875|ref|ZP_06258265.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|282581380|gb|EFB86773.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
Length = 483
Score = 366 bits (938), Expect = 6e-99, Method: Composition-based stats.
Identities = 132/472 (27%), Positives = 209/472 (44%), Gaps = 24/472 (5%)
Query: 27 SFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGR 86
FV +PWGE GTPLE P WQ++ ++ + + A+++G
Sbjct: 17 DPLAFVYFAYPWGEPGTPLENMEGPDEWQIQILKDIGEQLKKGK--DLQTAIQEAVASGH 74
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
GIGK+ L +WL+ + +ST + AN+E QL+T W E+SKW ++ K F +
Sbjct: 75 GIGKSALISWLIHFAISTHENTRGVVTANTEGQLRTKTWPELSKWHNMFIAKDLFTYTAT 134
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPD 205
++ + K + +S+ P++F G HN + ++ DEAS D
Sbjct: 135 AIFSSD----------KDYEKTWRIDAIPWSKNSPESFAGLHNQGNRILVLFDEASAIDD 184
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF 265
VI G LT+ N W NP R SG+F E F K W +QID+RTV+ + +
Sbjct: 185 VIWEVTEGALTDANTEIIWCAFGNPTRNSGRFRECFRKYRKFWNTYQIDSRTVKISNKTK 244
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--PLIMGCD 323
E + YG DSD +V V G FP FI I ++A + P + P+I+G D
Sbjct: 245 IEEWLEAYGEDSDFFKVRVRGVFPSASDLQFISTEIADKAQKQVYKPGQFEHLPVIIGVD 304
Query: 324 IAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT-TNNKISGLVEKYRPDAIIIDANNTGAR 382
A G D+ +V+R+G ++ L K D I+ ++Y+ DA+ ID G
Sbjct: 305 PAWTGSDSLEIVMRQGYYMKSLASIPKNDDDWRMAQLIAQFEDEYKADAVFIDM-GYGTG 363
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL--INHSGLIQNLK 440
+ LG + ++ D N R + +M +WL N L ++
Sbjct: 364 IYSIGKQLGRKWRLIEFGGKSNDP-VYLNMRAYMWGQMKEWLREGGSIPPNDQALYDDIV 422
Query: 441 SLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
++ I+ G + +ESK + +G S + D L TFA + R
Sbjct: 423 GPEA-IIDKNGRIQLESKKDMKDRGLPSPNKGDALALTFAARVVKKSETGNR 473
>gi|218700994|ref|YP_002408623.1| putative phage terminase, large subunit [Escherichia coli IAI39]
gi|218370980|emb|CAR18807.1| putative phage terminase, large subunit [Escherichia coli IAI39]
Length = 491
Score = 366 bits (938), Expect = 6e-99, Method: Composition-based stats.
Identities = 140/502 (27%), Positives = 224/502 (44%), Gaps = 25/502 (4%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
T E++L D + + L+ FPWGE+GT L + PR WQ + +
Sbjct: 1 MTDTALSPEEQLIDDIAG--FTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG DSD ++ V G FP FIP +
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNS 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL +++ +L + + + V G++ IE K + + +S D L+ TF
Sbjct: 405 CKTWLRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDMDFGRCPSYQYEGV 498
A + ++ S Q +
Sbjct: 464 AFPVSKR-INIPGQQSQQGRAI 484
>gi|332344357|gb|AEE57691.1| terminase, large subunit [Escherichia coli UMNK88]
Length = 491
Score = 366 bits (938), Expect = 6e-99, Method: Composition-based stats.
Identities = 138/497 (27%), Positives = 221/497 (44%), Gaps = 24/497 (4%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
E++L + + S + L+ FPWGE+GT L + PR WQ + +
Sbjct: 1 MTAAAMSPEEQLVEDIAS--FTYDPLGYALYAFPWGEEGTELAHATGPRKWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG DSD ++ V G FP FIP +
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNS 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL +++ +L + + + V G++ IE K + + +S D L+ TF
Sbjct: 405 CKTWLRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDMDFGRCPSY 493
A + G+
Sbjct: 464 AFPVSKRLRLPGQQNQQ 480
>gi|324008564|gb|EGB77783.1| hypothetical protein HMPREF9532_01752 [Escherichia coli MS 57-2]
Length = 491
Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats.
Identities = 139/502 (27%), Positives = 224/502 (44%), Gaps = 25/502 (4%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
T E++L + + + L+ FPWGE+GT L + PR WQ + +
Sbjct: 1 MTDTALSPEEQLIEDIAG--FTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDLGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG DSD ++ V G FP FIP +
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNS 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL +++ +L + + + V G++ IE K + + +S D L+ TF
Sbjct: 405 CKTWLRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDMDFGRCPSYQYEGV 498
A + ++ S Q +
Sbjct: 464 AFPVSKR-INIPGQQSQQGRAI 484
>gi|327252187|gb|EGE63859.1| terminase large subunit [Escherichia coli STEC_7v]
Length = 491
Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats.
Identities = 138/497 (27%), Positives = 221/497 (44%), Gaps = 24/497 (4%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
T E++L + + + L+ FPWGE+GT L + PR WQ + +
Sbjct: 1 MTDTALSPEEQLIEDIAG--FTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPATRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG DSD ++ V G FP FIP +
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNS 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL +++ +L + + + V G++ IE K + + +S D L+ TF
Sbjct: 405 CKTWLRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDMDFGRCPSY 493
A + G+
Sbjct: 464 AFPVSKRLRIPGQQNQQ 480
>gi|300898423|ref|ZP_07116764.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|300357890|gb|EFJ73760.1| conserved hypothetical protein [Escherichia coli MS 198-1]
Length = 491
Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats.
Identities = 138/497 (27%), Positives = 221/497 (44%), Gaps = 24/497 (4%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
T E++L + + + L+ FPWGE+GT L + PR WQ + +
Sbjct: 1 MTDTALSPEEQLIEDIAG--FTHDPLGYALYAFPWGEEGTELAHATGPRKWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG DSD ++ V G FP FIP +
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNS 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL +++ +L + + + V G++ IE K + + +S D L+ TF
Sbjct: 405 CKTWLRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDMDFGRCPSY 493
A + G+
Sbjct: 464 AFPVSKRLRIPGQQNQQ 480
>gi|294491573|gb|ADE90329.1| putative phage terminase, large subunit [Escherichia coli IHE3034]
Length = 491
Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats.
Identities = 138/497 (27%), Positives = 221/497 (44%), Gaps = 24/497 (4%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
T E++L + + + L+ FPWGE+GT L + PR WQ + +
Sbjct: 1 MTDTALSPEEQLIEDIAG--FTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG DSD ++ V G FP FIP +
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNS 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL +++ +L + + + V G++ IE K + + +S D L+ TF
Sbjct: 405 CKTWLRLGGMLDDQETADDLSTAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDMDFGRCPSY 493
A + G+
Sbjct: 464 AFPVSKRLRIPGQQNQQ 480
>gi|298381721|ref|ZP_06991320.1| terminase large subunit protein [Escherichia coli FVEC1302]
gi|301019339|ref|ZP_07183525.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|298279163|gb|EFI20677.1| terminase large subunit protein [Escherichia coli FVEC1302]
gi|299882256|gb|EFI90467.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|323948690|gb|EGB44595.1| hypothetical protein ERKG_04913 [Escherichia coli H252]
Length = 491
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 138/497 (27%), Positives = 221/497 (44%), Gaps = 24/497 (4%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
T E++L + + + L+ FPWGE+GT L + PR WQ + +
Sbjct: 1 MTDTALSPEEQLIEDIAG--FTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG DSD ++ V G FP FIP +
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNS 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL +++ +L + + + V G++ IE K + + +S D L+ TF
Sbjct: 405 CKTWLRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDMDFGRCPSY 493
A + G+
Sbjct: 464 AFPVSKRLRIPGQQNQQ 480
>gi|117624715|ref|YP_853628.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
gi|115513839|gb|ABJ01914.1| putative phage terminase, large subunit [Escherichia coli APEC O1]
Length = 491
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 137/497 (27%), Positives = 221/497 (44%), Gaps = 24/497 (4%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
T E++L + + + L+ FPWGE+GT L + PR WQ + +
Sbjct: 1 MTDTALSPEEQLIEDIAG--FTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG DSD ++ V G FP FIP +
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R ++P+I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAAQVAHSPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNS 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL +++ +L + + + V G++ IE K + + +S D L+ TF
Sbjct: 405 CKTWLRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDMDFGRCPSY 493
A + G+
Sbjct: 464 AFPVSKRLRIPGQQNQQ 480
>gi|301046412|ref|ZP_07193572.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|300301638|gb|EFJ58023.1| conserved hypothetical protein [Escherichia coli MS 185-1]
Length = 491
Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats.
Identities = 138/491 (28%), Positives = 220/491 (44%), Gaps = 24/491 (4%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNS 69
E++L + + S + L+ FPWGE GT L + PR WQ + + H N
Sbjct: 7 SPEEQLVEDIAS--FTYDPLGYALYAFPWGEDGTELAHATGPRQWQADAFREIRDHLQNP 64
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E+
Sbjct: 65 ETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEII 122
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
KW +L K WF + +++ D K + +SE + F G HN
Sbjct: 123 KWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLHN 172
Query: 190 TY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ ++ DEAS D++ G LT+ + W+ NP R +G+F E F K W
Sbjct: 173 ERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRW 232
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
K QID+RTVEG + + + YG DSD ++ V G FP FIP + +EA+ R
Sbjct: 233 KTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKR 292
Query: 309 --EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVE 365
+AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+ +
Sbjct: 293 VVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFED 352
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
+Y+ DA+ ID G + G V + D + N+R E+ WL
Sbjct: 353 QYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNSCKTWLR 410
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPR 482
+++ +L + + + V G++ IE K + + +S D L+ TFA +
Sbjct: 411 LGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPVSK 469
Query: 483 SDMDFGRCPSY 493
G+
Sbjct: 470 RLRLPGQQNQQ 480
>gi|89152423|ref|YP_512256.1| putative terminase large subunit [Escherichia phage phiV10]
gi|74055446|gb|AAZ95895.1| putative terminase large subunit [Escherichia phage phiV10]
Length = 491
Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats.
Identities = 137/497 (27%), Positives = 220/497 (44%), Gaps = 24/497 (4%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
T E++L + + + L+ FPWGE+GT L + PR WQ + +
Sbjct: 1 MTDTALSPEEQLIEDIAG--FTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG SD ++ V G FP FIP +
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEGSDFVKIRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNS 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL +++ +L + + + V G++ IE K + + +S D L+ TF
Sbjct: 405 CKTWLRLGGMLDDQETADDLSTAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDMDFGRCPSY 493
A + G+
Sbjct: 464 AFPVSKRLRIPGQQNQQ 480
>gi|331648179|ref|ZP_08349269.1| conserved hypothetical protein [Escherichia coli M605]
gi|331043039|gb|EGI15179.1| conserved hypothetical protein [Escherichia coli M605]
Length = 491
Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats.
Identities = 138/497 (27%), Positives = 221/497 (44%), Gaps = 24/497 (4%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
T E++L + + + L+ FPWGE+GT L + PR WQ + +
Sbjct: 1 MTDTALSPEEQLIEDIAG--FTHDPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPETRYQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKDWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG DSD ++ V G FP FIP +
Sbjct: 227 KYKHRWKTAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R +AP+I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFNA 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL +++ +L + + + V G++ IE K + + +S D L+ TF
Sbjct: 405 CKIWLRLGGMLDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDMDFGRCPSY 493
A + G+
Sbjct: 464 AFPVSKRLRIPGQQNQQ 480
>gi|330007152|ref|ZP_08305894.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
gi|328535499|gb|EGF61959.1| hypothetical protein HMPREF9538_03583 [Klebsiella sp. MS 92-3]
Length = 495
Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats.
Identities = 139/501 (27%), Positives = 221/501 (44%), Gaps = 27/501 (5%)
Query: 4 ELPTNPETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
E++L + + D + L+ FPWGE GT L S PR WQ +
Sbjct: 1 MTDAALSPEEQLKEQLIDDIASFTHDPLGYALYAFPWGEDGTELAHASGPRQWQADAFRE 60
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+ H N P + + ++G GIGK+ + L+ W MST V+ AN++ QL+
Sbjct: 61 IGEHLQNPATRHQPLM--ISRASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQLR 118
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
T W E+ KW +L K WF + +++ D K + +SE
Sbjct: 119 TKTWPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNT 168
Query: 182 DTFVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
+ F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E
Sbjct: 169 EAFAGLHNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFREC 228
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
F K WK QID+RTVEG + + + YG DSD +V V G FP FIP
Sbjct: 229 FRKYKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPTG 288
Query: 301 IIEEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTN 357
+ +EA+ R +AP I+G D A G D+ V+ LR+G + L+ +K TD
Sbjct: 289 LTDEAMKRVVTAAQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMA 348
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+I+ ++Y+ DA+ ID G + G V + D + N+R E+
Sbjct: 349 KRIADFEDQYQADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASADPQM-LNKRGEMF 406
Query: 418 VKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
WL+ ++ +L + + + V G++ +E K + + +S D L+
Sbjct: 407 NACKTWLKLGGALDDQETADDLSAAE-YKVRVDGKIVMEPKEDIKERLGRSPGKGDALLL 465
Query: 475 TFAENPPRSD---MDFGRCPS 492
TFA + G+ P+
Sbjct: 466 TFAYPVTKRSDFPAAGGKQPN 486
>gi|304398406|ref|ZP_07380280.1| terminase, large subunit [Pantoea sp. aB]
gi|304354272|gb|EFM18645.1| terminase, large subunit [Pantoea sp. aB]
Length = 490
Score = 363 bits (930), Expect = 5e-98, Method: Composition-based stats.
Identities = 133/494 (26%), Positives = 217/494 (43%), Gaps = 23/494 (4%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
+ + + E +L + + + L+ FPWGE+GT L PR WQ + + + A
Sbjct: 1 MSSAADLEIQLIEDI--GAFTHDPFGYALYAFPWGEEGTDLAYSKGPRQWQEDAFKQIGA 58
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
H N P + ++G GIGK+ + LV W M T V+ AN+E QL+T
Sbjct: 59 HLQNPDTRHQPLM--IGRASGHGIGKSAFISMLVKWGMDTCEDCKVVVTANTENQLRTKT 116
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
W E++KW L + WF + +++ +K + +SE + F
Sbjct: 117 WPEIAKWQRLSITQDWFTCTATAIYSNDPSH----------AKSWRADAIPWSENNTEAF 166
Query: 185 VGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
G HN + +I DEAS D++ G LT+ N W+ NP R +G+F E F K
Sbjct: 167 AGLHNERKRIILIFDEASNIADLVWEVAEGALTDENTEIIWVAFGNPTRNTGRFRECFRK 226
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
WK QID+R+VEG + + + YG DSD +V V G FP FIP + +
Sbjct: 227 LRHRWKTAQIDSRSVEGTNKEQIQKWVDDYGEDSDFVKVRVRGLFPSASEAQFIPTGLTD 286
Query: 304 EALNREPCPDP--YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL-FDWSKTDLRTTNNKI 360
A+ R P +A ++G D A +GGD V+ LR+G + L TD +
Sbjct: 287 AAVGRVITPGQVAHAATVIGVDPAHQGGDPAVIYLRQGLHTKKLGEYQRTTDDVLFAKIV 346
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ ++YR DA+ ID G + G + + + D + N+R E++ +
Sbjct: 347 ASFEDEYRADAVFIDY-GYGTGLKSVGDNWGRNWQLIQFGGGSTDPQM-ANKRGEMYNAV 404
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
WL+ ++ + + L + + + + +E K + + KS + +D L TFA
Sbjct: 405 KTWLKDGGQLDSQQVAEELSAAEYKVRLKDSRIVLEDKTSIKERLGKSPNDADALALTFA 464
Query: 478 ENPPRSDMDFGRCP 491
+ G
Sbjct: 465 FPVVKKLHYVGSND 478
>gi|320175050|gb|EFW50163.1| terminase B protein, putative [Shigella dysenteriae CDC 74-1112]
Length = 480
Score = 363 bits (930), Expect = 5e-98, Method: Composition-based stats.
Identities = 135/474 (28%), Positives = 215/474 (45%), Gaps = 22/474 (4%)
Query: 27 SFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGR 86
+ L+ FPWGE+GT L + PR WQ + + H N P + A ++G
Sbjct: 11 DPLGYALYAFPWGEEGTELAHATGPRQWQADAFREIRDHLQNPETRYQPLML--ARASGH 68
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
GIGK+ + L+ W MST V+ AN++ QL+T W E+ KW +L K WF +
Sbjct: 69 GIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEIIKWSNLAITKDWFTCTAT 128
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY-GMAIINDEASGTPD 205
+++ D K + +SE + F G HN + ++ DEAS D
Sbjct: 129 AMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLHNERKRIIVVFDEASNIAD 178
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF 265
++ G LT+ + W+ NP R +G+F E F K WK QID+RTVEG +
Sbjct: 179 LVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRWKCAQIDSRTVEGTNKQQ 238
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLIMGCD 323
+ + YG DSD ++ V G FP FIP + +EA+ R +AP+I+G D
Sbjct: 239 LQKWVDDYGEDSDFVKIRVRGIFPDASELQFIPTGLTDEAMKRVVTAAQVAHAPVIIGVD 298
Query: 324 IAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
A G D+ V+ LR+G + L+ +K TD +I+ ++Y+ DA+ ID G
Sbjct: 299 PAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFEDQYQADAVFID-FGYGTG 357
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSL 442
+ G V + D + N+R E+ + WL +++ +L +
Sbjct: 358 LKSIGDGWGRTWQLVPFGGASTDPQM-LNKRGEMFISCKTWLRLGGMLDDQETADDLSAA 416
Query: 443 KSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
+ + V G++ IE K + + +S D L+ TFA + G+
Sbjct: 417 E-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPVSKRLRIPGQQNQQ 469
>gi|30387381|ref|NP_848210.1| terminase large subunit [Enterobacteria phage epsilon15]
gi|30266036|gb|AAO06065.1| terminase large subunit [Salmonella phage epsilon15]
Length = 491
Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats.
Identities = 138/491 (28%), Positives = 221/491 (45%), Gaps = 24/491 (4%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNS 69
TE++L + + S + L+ FPWGE GT L + PR WQ + + H N
Sbjct: 7 STEEQLVEDIAS--FTYDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIRDHLQNP 64
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T W E+
Sbjct: 65 ATRHQPLML--ARASGHGIGKSAFISMLINWGMSTCEDCKVVVTANTDNQLRTKTWPEII 122
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
KW +L K WF + +++ D K + +SE + F G HN
Sbjct: 123 KWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEAFAGLHN 172
Query: 190 TY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ ++ DEAS D++ G LT+ + W+ NP R +G+F E F K W
Sbjct: 173 ERKRIIVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFRKYKHRW 232
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
K QID+RTVEG + + + YG +SD +V V G FP FIP + +EA+ R
Sbjct: 233 KCAQIDSRTVEGTNKQQLQKWVDDYGEESDFVKVRVRGIFPDASELQFIPTGLTDEAMKR 292
Query: 309 --EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGLVE 365
+AP+I+G D A G D+ V+ LR+G + L+ +K TD +I+ +
Sbjct: 293 VVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADFED 352
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
+Y+ DA+ ID G + G + + D + N+R E+ WL+
Sbjct: 353 QYQADAVFID-FGYGTGLKSIGDGWGRTWQLIPFGGGSTDPQM-LNKRGEMFNSCKTWLK 410
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPR 482
++ +L + + + V G++ IE K + + +S D L+ TFA +
Sbjct: 411 LGGALDDQETADDLSAAE-YKVRVDGKIVIEPKEDIKERLGRSPGKGDALLLTFAFPVTK 469
Query: 483 SDMDFGRCPSY 493
G+
Sbjct: 470 HLRIPGQESQQ 480
>gi|262043569|ref|ZP_06016682.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039103|gb|EEW40261.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 491
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 140/499 (28%), Positives = 220/499 (44%), Gaps = 27/499 (5%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
E++L D + S + L+ FPWGE GT L + PR WQ + +
Sbjct: 1 MTDAALSPEEQLIDDIAS--FTHDPLGYALYAFPWGEDGTELAHATGPRKWQADAFREIR 58
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
H N P + A ++G GIGK+ + L+ W MST V+ AN++ QL+T
Sbjct: 59 DHLQNPATRHQPLML--ARASGHGIGKSAFISMLINWAMSTCEDCKVVVTANTDNQLRTK 116
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
W E+ KW +L K WF + +++ D K + +SE +
Sbjct: 117 TWPEIIKWSNLAITKEWFTCTATAMYSNDPGHD----------KRWRADAIPWSEHNTEA 166
Query: 184 FVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
F G HN + ++ DEAS D++ G LT+ + W+ NP R +G+F E F
Sbjct: 167 FAGLHNERKRIVVVFDEASNIADLVWEVAEGALTDEDTEIIWVAFGNPTRNTGRFRECFR 226
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
K WK QID+RTVEG + + + YG DSD +V V G FP FIP +
Sbjct: 227 KYKHRWKCAQIDSRTVEGTNKQQLQKWVDDYGEDSDFVKVRVRGIFPDASELQFIPTGLT 286
Query: 303 EEALNR--EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNK 359
+EA+ R +AP I+G D A G D+ V+ LR+G + L+ +K TD +
Sbjct: 287 DEAMKRVVTAVQVAHAPRIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKR 346
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I+ ++Y DA+ ID G + G V + D + N+R E+
Sbjct: 347 IADFEDQYLADAVFID-FGYGTGLKSIGDGWGRTWQLVPFGGASADPQM-LNKRGEMFNA 404
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
WL+ ++ +L + + + V G++ +E K + + +S D L+ TF
Sbjct: 405 CKTWLKLGGALDDQETADDLSAAE-YKVRVDGKIVMEPKEDIKERLGRSPGKGDALLLTF 463
Query: 477 AENPPRSDM---DFGRCPS 492
A + G+ P+
Sbjct: 464 AYPVTKRSEFPAAGGKQPN 482
>gi|228911519|ref|ZP_04075310.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
200]
gi|228848128|gb|EEM92991.1| hypothetical protein bthur0013_56490 [Bacillus thuringiensis IBL
200]
Length = 459
Score = 349 bits (894), Expect = 8e-94, Method: Composition-based stats.
Identities = 129/494 (26%), Positives = 213/494 (43%), Gaps = 75/494 (15%)
Query: 14 KLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
++ D+ W D + F+ +L F+ P WQ + + +
Sbjct: 2 EIIDVYWDDPVA--FAEDMLGFY--------------PDEWQRKVLMDLA---------- 35
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ K ++ +G+G+GKT L + +V+W + RP VIC A ++ QL T LWAE++KWL
Sbjct: 36 --QSPKVSVRSGQGVGKTGLESVVVIWFLCCRPNPKVICTAPTKEQLFTVLWAEIAKWLE 93
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
K+ + ++ + + RT + +P+ G H Y M
Sbjct: 94 GSAVKNLLKWTKTRVYMIG------------SEERWFATARTAT--KPENMQGFHEDY-M 138
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ DEASG D I ILG L+ A + NP R SG FY+ N+ D +K ++
Sbjct: 139 LFVCDEASGIADPIMEAILGTLS--GAENKLFLCGNPTRTSGVFYDSHNRDRDLYKIHKV 196
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ E + +YG SDV RV V G+FP+ + D+FIPL I+E+A + + P
Sbjct: 197 SSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPKAEADAFIPLEIVEQAASCKVEPT 256
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA-- 371
L +G D+A G D TV+ R G + L + K D T + L ++Y
Sbjct: 257 -GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYKQDTMETAGHVLKLAKEYMAKYKQ 315
Query: 372 -----IIIDANNTGARTCDYLE------MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
I +D + G D L+ L + VY V+ + +D E N E +
Sbjct: 316 LKRVDIKVDDSGVGGGVTDRLKEVIKSERLPFKVYPVVNNGKPLDDEHYDNAGAEGWAVV 375
Query: 421 ADWLEF------------ASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
D LE + N +I S + + + + G++A+E K + +G +S
Sbjct: 376 RDLLEENMKAFIQGEEPTMEIPNDEKMISQFSS-RKYRITSRGKIALERKEEMKKRGLQS 434
Query: 466 TDYSDGLMYTFAEN 479
D +D ++ F +
Sbjct: 435 PDRADAIVLAFYKP 448
>gi|228968731|ref|ZP_04129698.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790961|gb|EEM38595.1| hypothetical protein bthur0004_54930 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 459
Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats.
Identities = 130/494 (26%), Positives = 214/494 (43%), Gaps = 75/494 (15%)
Query: 14 KLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
++ D+ W D + F+ +L F+ P WQ + + +
Sbjct: 2 EIIDVYWDDPVA--FAEDMLGFY--------------PDEWQRKVLMDLA---------- 35
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ K ++ +G+G+GKT L + +V+W + RP VIC A ++ QL T LWAE++KWL
Sbjct: 36 --QSPKVSVRSGQGVGKTGLESVVVIWFLCCRPNPKVICTAPTKEQLFTVLWAEIAKWLE 93
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
K+ + ++ + + RT + +P+ G H Y M
Sbjct: 94 GSAVKNLLKWTKTRVYMIG------------SEERWFATARTAT--KPENMQGFHEDY-M 138
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ DEASG D I ILG L+ A + NP R SG FY+ N+ D +K ++
Sbjct: 139 LFVCDEASGIADPIMEAILGTLS--GAENKLFLCGNPTRTSGVFYDSHNRDRDLYKIHKV 196
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ E + +YG SDV RV V G+FP+ + D+FIPL I+E+A + + P
Sbjct: 197 SSLDSPRTSKDNIEVLKKKYGEGSDVWRVRVLGEFPKAEADAFIPLEIVEQAASCKVEPT 256
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA-- 371
L +G D+A G D TV+ R G + L + K D T + L ++Y
Sbjct: 257 -GETLDLGVDVARFGDDETVIAPRIGNKVFKLLNHYKQDTMETAGHVLKLAKEYMAKYKQ 315
Query: 372 -----IIIDANNTGARTCDYLE------MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
I +D + G D L+ L + VY V+ + +D E N TE +
Sbjct: 316 LKRVDIKVDDSGVGGGVTDRLKEVIKSERLPFKVYPVVNNGKPLDDEHYDNAGTEGWAVV 375
Query: 421 ADWLEF------------ASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
D LE + N +I S + + + + G++A+E K + +G +S
Sbjct: 376 RDLLEENMKAFIQGEEPTMEIPNDEKMISQFSS-RKYRITSRGKIALERKEEMKKRGLQS 434
Query: 466 TDYSDGLMYTFAEN 479
D +D ++ F +
Sbjct: 435 PDRADAIVLAFYKP 448
>gi|290968649|ref|ZP_06560187.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
gi|290781302|gb|EFD93892.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
28L]
Length = 487
Score = 344 bits (881), Expect = 2e-92, Method: Composition-based stats.
Identities = 136/466 (29%), Positives = 224/466 (48%), Gaps = 31/466 (6%)
Query: 24 IKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAIS 83
+ FV F W + + P++WQ++ ++ V + A +
Sbjct: 15 LASDPVAFVYFAFDWDSEELKGQN---PQTWQIKTLKEVGE------GLSLSTALQHATA 65
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+G GIGK+ L AWL+LW +STRP + AN+ TQL+T WAE+SKW L K +F +
Sbjct: 66 SGHGIGKSALVAWLILWAISTRPDTRGVVTANTATQLETKTWAELSKWYHLFRGKKFFTL 125
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG-MAIINDEASG 202
S ++ C + + +S +R ++F G HN + +I DEAS
Sbjct: 126 TSTAIF----------CRQEGHERTWRIDAIPWSVDRTESFAGLHNQGNRLLLIFDEASA 175
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
+ I G LT+++ W++ NP R +G+F++ F+K W +ID+RTV+ +
Sbjct: 176 IDNKIWEVAEGALTDKDTEILWLVFGNPTRSTGRFFDCFHKYKKSWITQKIDSRTVDISN 235
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP---CPDPYAPLI 319
+ + I YG+DSD +V V G+FP FI I+ A R P +AP I
Sbjct: 236 KTQLQKWIQTYGIDSDFVKVRVLGEFPDTSDTQFISTAIVRTAWERRPLRTAEYDFAPCI 295
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD-LRTTNNKISGLVEKYRPDAIIIDANN 378
+G D A GGD+TV+ LR+G E L ++ + D +++ +KY DA+ ID
Sbjct: 296 IGMDPAWTGGDSTVIFLRQGFFSEKLAEYKQNDNDGVMAARLAEFEDKYHADAVFIDK-G 354
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH-SGLIQ 437
G + +G V +++ + N+R E+ M +WL+ +I GLI+
Sbjct: 355 YGTGIYSFGVTMGRQWRLVSFAEKS-GAQAYANKRAEMWGNMKEWLQEGGVIPQVDGLIE 413
Query: 438 NLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
L + ++F + GE+ +E K + +G +S + +D L TFA
Sbjct: 414 ELTAPQAF-INARGEIQLEKKEDMKKRGIESPNMADALALTFAYPV 458
>gi|289578588|ref|YP_003477215.1| hypothetical protein Thit_1395 [Thermoanaerobacter italicus Ab9]
gi|289528301|gb|ADD02653.1| conserved hypothetical protein [Thermoanaerobacter italicus Ab9]
Length = 460
Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats.
Identities = 128/509 (25%), Positives = 201/509 (39%), Gaps = 71/509 (13%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
+ N +K+ D +D + F VL PW + Q E ++ V
Sbjct: 1 MKMNKTQAKKVLDRARNDPVF--FVRCVLKGDPWEK--------------QEEILKAVRD 44
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
H + A+ A G+GKT + AW+ LW + T VI A + Q++ L
Sbjct: 45 HK------------RVAVRACHGVGKTKVAAWVALWFLYTHHNSKVITTAPTWHQVENLL 92
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
W E+ + ++ + + + + S ++P+ F
Sbjct: 93 WREIHAAHAASRIPLGGKVLQTQIEL---------------GEQWFALGL--STDKPERF 135
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G H + + +I DEASG GFLT A ++ NP +LSG+FY F P
Sbjct: 136 QGFHAEH-ILLIVDEASGVEQYTFDAAEGFLTSIGAK--LLLIGNPTQLSGEFYNAFRSP 192
Query: 245 LDDWKRFQIDTRTVEG-----------IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
L + + I + P + E ++G DS + V G+FP+Q
Sbjct: 193 L--YHKIHISAFDSPNLKAGKIVRPYLVTPEWVEDKRLKWGEDSPLWYSRVLGEFPEQGN 250
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D+ IPL IE A R + P+ +G D+A G D TV++LRRG E ++ D
Sbjct: 251 DTLIPLAWIEAAQQRWHMTEAGEPVEIGADVARYGTDTTVIMLRRGDKAEIVYQLRGQDT 310
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
K+ +K + I ID GA D L+ GY V + + A D N+R
Sbjct: 311 MEVTGKVIDAFKKTGANVIKIDVVGIGAGVVDRLKEQGYPVQGLNVGESATDKGRFVNKR 370
Query: 414 TELHVKMADWLEFA--SLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDY 468
E + + + + ++ L L SLK + + G + IESK R +G S D
Sbjct: 371 AEWYWALRERFQEGTIAIPPDDELASQLASLK-YKFDSRGRIQIESKEELRRRGLPSPDK 429
Query: 469 SDGLMYTFAE----NPPRSDMDFGRCPSY 493
+D LM F+ D R S+
Sbjct: 430 ADALMLAFSSTGMKPVDEKIKDIFRRASF 458
>gi|150390341|ref|YP_001320390.1| hypothetical protein Amet_2579 [Alkaliphilus metalliredigens QYMF]
gi|149950203|gb|ABR48731.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
Length = 469
Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats.
Identities = 130/493 (26%), Positives = 202/493 (40%), Gaps = 74/493 (15%)
Query: 15 LFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
L D W + + F+ +L F+ P WQ + + + H
Sbjct: 8 LLDNYWDNPVW--FAEDMLGFY--------------PDPWQAKVLMDLAQH--------- 42
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
K ++ +G+G+GKT L + + W + TRP VI A + QL LWAE+SKWLS
Sbjct: 43 ---PKVSVRSGQGVGKTGLESIAITWYLCTRPFPKVIATAPTRQQLYDVLWAEISKWLSK 99
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
++ + + + RT RP+ G H Y M
Sbjct: 100 SKVDKLLRWTKTKIYMNGFE------------ERWWATARTA--VRPENMQGFHEDY-ML 144
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
+ DEASG D I ILG LT ++ NP + SG FY+ N+ D +K ++
Sbjct: 145 FVVDEASGVADPIMEAILGTLTGYENK--LLLCGNPTKTSGTFYDSHNRDRDTYKSHKVS 202
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ E + +YG DSDV RV V G FP+ + DS I L + E+A
Sbjct: 203 SMDSPRTSKENIEMLKKKYGADSDVFRVRVLGDFPKGEADSLISLEVTEQAAETVVDISN 262
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII- 373
L +G DIA G D T++ R G + L +SK D T I V++ + +
Sbjct: 263 AYTLNIGADIARFGDDKTIIAPRIGNRVLDLQQYSKKDTMETAGNILRTVDRLKTQHLQI 322
Query: 374 ------IDANNTGARTCDYLEM------LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
ID + G D L LGY + + +A D E N+ E+ +
Sbjct: 323 NKIVIKIDDDGLGGGVTDRLREINRQQSLGYIIVPIKNGSKADDPEHYYNKAAEMWDNIR 382
Query: 422 DWLEF------------ASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKST 466
+ L+ L LI+ L S + + V + G + +ESK + + +S
Sbjct: 383 ELLDENLSKFLQGEPGVIQLPKDDILIKQL-SNRKYKVDSKGRIELESKDEMKRRIGESP 441
Query: 467 DYSDGLMYTFAEN 479
D +D ++Y+FA +
Sbjct: 442 DRADAVIYSFASD 454
>gi|228950291|ref|ZP_04112468.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228809453|gb|EEM55897.1| hypothetical protein bthur0007_63570 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 495
Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats.
Identities = 123/517 (23%), Positives = 201/517 (38%), Gaps = 79/517 (15%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
+S ++ T E Q + + + FV P WQ E +
Sbjct: 3 VSNDVTTEEEVLQDIITQLLEIYV-DDPVAFVEDILEVE-----------PDPWQKEVLN 50
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ H ++ +G+G+GKT + +W+ +W + RP +IC A ++ QL
Sbjct: 51 DIANHSH------------VSVRSGQGVGKTAMESWICIWFLCCRPYPKIICTAPTKQQL 98
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
LWAE++KWL+ K + ++ + + +T + R
Sbjct: 99 YDVLWAEIAKWLNSSQVKDLLKWTKTKIYMKGFE------------DRWFATAKTAT--R 144
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
P+ G H Y M I DEASG D I ILG L+ + M NP + SG F++
Sbjct: 145 PENMQGFHEDY-MLFIADEASGIADDIMEAILGTLS--GSENKLFMCGNPTKTSGVFFDS 201
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
NK +K ++ + E + +YG SDV RV V G+FP+ + D+FI L
Sbjct: 202 HNKDRALYKSHKVSSADSPRTSKKNIEMLKKKYGEGSDVYRVRVEGEFPRGEADAFISLE 261
Query: 301 IIEEALNRE-----------------PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
E A RE A + +GCD+A G D T++ RRG +
Sbjct: 262 TAEAARMREVYKVEVIENEEEESTVKEIIPDTAVVEIGCDVARFGSDETIIATRRGWKVL 321
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDA--------IIIDANNTGARTCDYLEM------ 389
L + D + + +KY I ID G D L+
Sbjct: 322 PLQVHHQRDTMYVSGLLVQEAKKYFSWCERTGKRIPIRIDDTGVGGGVTDRLKEVVAEND 381
Query: 390 LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD-WLEFASLINHSGLIQNLKSLKSFIVP 448
V + + + ++ D LEF +L + LI L S++ + +
Sbjct: 382 YPIDVIPINFASKG--NAEYACIVSVMYGHFKDNCLEFVALPDDEDLIAQL-SVRKYQIN 438
Query: 449 NTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPR 482
+ G + IE K + +G KS D ++ ++ FA P+
Sbjct: 439 SDGRIKIEPKKAMKDRGLKSPDRAEAVVMAFAPFYPK 475
>gi|54302246|ref|YP_132239.1| terminase large subunit [Photobacterium profundum SS9]
gi|46915667|emb|CAG22439.1| hypothetical protein PBPRB0566 [Photobacterium profundum SS9]
Length = 513
Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats.
Identities = 124/495 (25%), Positives = 198/495 (40%), Gaps = 34/495 (6%)
Query: 25 KLSFSNFVLHFFPWGEKG------------TPLEGFSAPRSWQLEFMEVVDAHCLNS--V 70
FV++ +PW + + P +W E + + +
Sbjct: 21 YDDPLGFVMYAYPWDTDPDLQIVKLPEPWASKYDSVYGPDAWFCEMCDQLQEVIRKNDFN 80
Query: 71 NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK 130
+ F +IS+G GIGK+ ++WL+ ++MSTRP + +N+ QL+T W E+ K
Sbjct: 81 GVDPVDAFLYSISSGHGIGKSCASSWLIHFVMSTRPNSKGVVTSNTSEQLRTKTWGELGK 140
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
W L NKHWF + + ++ D ++ + +T EE ++F G H
Sbjct: 141 WTKKLINKHWFVYNNGKGNMNFYHKD--------YAETWRVDAQTCREENSESFAGLHCA 192
Query: 191 YGMAII-NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
DEAS PD I G LT+ FW + NP R SG+F E + + W
Sbjct: 193 SSTPWYLFDEASAVPDKIWEVAEGGLTDG--EPFWFVFGNPTRNSGRFRECWRRFRQRWN 250
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
R QID+ TV+ + + YG DSD RV V G FP + I ++E A++R
Sbjct: 251 RKQIDSSTVQVTNKKKISEWESDYGEDSDFYRVRVKGVFPSASSNQKISGALLEAAMSRT 310
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV--IEHLFDWSKT---DLRTTNNKISGLV 364
P +P +M D+A GGDN V R G + + D L
Sbjct: 311 AHVIPGSPRVMSLDVARGGGDNCVFRFRHGLNGGVRKKVTLPGSEYRDSMKLAAMAVQLC 370
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL 424
+++PDA ID G D + LG++ + +A D N R ++ + +WL
Sbjct: 371 SEFKPDAFFIDETGVGGPVGDRIRQLGFNCIGINFASKAPDP-HYANMRAYMYHQWGEWL 429
Query: 425 EFAS-LINHSGLIQNLKSLKSFIVPNTGELAIESK--RVKGAKSTDYSDGLMYTFAENPP 481
+ L GL+ + +++ E+ I + STD D A
Sbjct: 430 KAGGSLHYDEGLLTEVGAIEYTHDRKDREILIPKDVIKKAIGISTDDGDACALLHAYPVA 489
Query: 482 RSDMDFGRCPSYQYE 496
+ + E
Sbjct: 490 PRQQGYNSASNNMCE 504
>gi|209901239|ref|YP_002290878.1| putative terminase B [Clostridium phage phiCD27]
gi|199612120|gb|ACH91293.1| putative terminase B [Clostridium phage phiCD27]
Length = 469
Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats.
Identities = 133/499 (26%), Positives = 211/499 (42%), Gaps = 74/499 (14%)
Query: 9 PETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLN 68
+ L D W + + F+ +L+F WQ + + +
Sbjct: 2 DKALLTLLDCYWDNPVW--FAEDMLNF--------------KADKWQSDVLMALA----- 40
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
+ K +I +G+G+GKT L + +W +STRP V+ A + QL LWAE+
Sbjct: 41 -------QTPKVSIRSGQGVGKTGLESIATVWYLSTRPFPKVVATAPTRQQLYDVLWAEI 93
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH 188
+KWLS + E ++ + + + RT +P+ G H
Sbjct: 94 AKWLSNSKVEKLLEWTKTKVYMKGFE------------ERWWATARTA--VKPENMQGFH 139
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
Y M + DEASG D I ILG L+ A ++ NP R SG FY+ N+ D +
Sbjct: 140 EDY-MLFVVDEASGVADPIMEAILGTLS--GAENKLLLCGNPTRTSGTFYDSHNRDRDLY 196
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
K F++ + E + +Y SD RV V G+FP+ + DS I L +E + R
Sbjct: 197 KTFKVSSLDSPRTSKDNIEMLKRKYHEGSDPWRVRVLGEFPKGESDSLISLEAVETSTIR 256
Query: 309 EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR 368
E L +G DIA G D T++ R G + L +SK D T I V+K++
Sbjct: 257 EVNISNDYILNIGADIARYGDDETIIAPRIGGKVFDLLTYSKKDTMETVGNILRAVDKFK 316
Query: 369 PDAIII-------DANNTGARTCDYLE------MLGYHVYRVLGQKRAVDLEFCRNRRTE 415
I D + GA D L+ L Y V + A++ + N+ +E
Sbjct: 317 NMYHQINRVKIKTDDDGLGAGVTDRLKEVIRHERLKYEVIPIQNGSSAIEKDKYYNKASE 376
Query: 416 LHVKMADWLEF------------ASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RV 460
+ M + L+ L N LI+ L S + + V + G++ IESK +
Sbjct: 377 MWDNMREELDANLSSFIQNKEAIIQLPNDDKLIKQL-SNRKYTVDSKGKIQIESKKEMKK 435
Query: 461 KGAKSTDYSDGLMYTFAEN 479
+ +S D +D ++Y+FAEN
Sbjct: 436 RIGESPDRADAVIYSFAEN 454
>gi|150016512|ref|YP_001308766.1| hypothetical protein Cbei_1636 [Clostridium beijerinckii NCIMB
8052]
gi|149902977|gb|ABR33810.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
8052]
Length = 470
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 134/500 (26%), Positives = 211/500 (42%), Gaps = 75/500 (15%)
Query: 9 PETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLN 68
++ L D W + + F+ +++F WQ E + +
Sbjct: 2 DKSLITLLDTYWDNPVW--FAEDMMNFHA--------------DKWQSEVLMALA----- 40
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
+ K ++ +G+G+GKT L + +V W + TRP VI A + QL LWAE+
Sbjct: 41 -------QSPKVSVRSGQGVGKTGLESIVVTWYLCTRPFPKVIATAPTRQQLYDVLWAEI 93
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH 188
SKWL+ ++ E ++ + S+ + +T + RP+ G H
Sbjct: 94 SKWLASSKIENLLEWTKTKIYMKGY------------SERWWATAKTAT--RPENMQGFH 139
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
Y M + DEASG D I ILG LT +M NP R SG FY+ N+ D +
Sbjct: 140 EDY-MLFVVDEASGVADPIMEAILGTLTGYENK--LLMCGNPTRTSGTFYDSHNRDRDLY 196
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
K F++ + E + +Y SDV RV V G+FP+ + DS I L E A
Sbjct: 197 KTFKVSSLESPRTSKDNIEMLKRKYHEGSDVWRVRVEGEFPKGESDSLISLEYAETATIT 256
Query: 309 EP-CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
+ L +G DIA G D +V+ R G + L ++K D T I +K+
Sbjct: 257 KINNIHNNFTLHIGADIARFGNDESVIAPRIGNKVFDLLTYTKKDTMETTGNILRATDKF 316
Query: 368 RPDA-------IIIDANNTGARTCDYLEM------LGYHVYRVLGQKRAVDLEFCRNRRT 414
+ + I +D + G D L LGY V + +A D E ++
Sbjct: 317 KNEYKHINKVKIRVDDDGLGGGVTDRLREVIRQEGLGYEVMPIKNGSKANDEEHYSDKSA 376
Query: 415 ELHVKMADWLEF------------ASLINHSGLIQNLKSLKSFIVPNTGELAIESK---R 459
E+ M D LE L N+ LI+ L S + F + + G + +E K +
Sbjct: 377 EMWGNMRDILEENFTNFVQGKEPTIELPNNDKLIKQL-SNRKFRIDSKGRIDLEKKEEMK 435
Query: 460 VKGAKSTDYSDGLMYTFAEN 479
+ +S D +D ++Y+FAEN
Sbjct: 436 KRIGESPDLADAVIYSFAEN 455
>gi|282598712|ref|YP_003358792.1| putative phage terminase B protein [Enterococcus phage phiEf11]
gi|300860603|ref|ZP_07106690.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|307292389|ref|ZP_07572245.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
TX0411]
gi|258598082|gb|ACV83339.1| putative phage terminase B protein [Enterococcus phage phiEf11]
gi|300849642|gb|EFK77392.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
gi|306496518|gb|EFM66079.1| hypothetical protein HMPREF9509_02682 [Enterococcus faecalis
TX0411]
gi|315146097|gb|EFT90113.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
Length = 484
Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats.
Identities = 122/479 (25%), Positives = 212/479 (44%), Gaps = 51/479 (10%)
Query: 33 LHFFPWGEKGTPLEGF-SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
F P+ + G ++ + P ++ + + + + V + + K ++ +G+G+GKT
Sbjct: 3 KEFIPFADIGAAIDYYYDKPVAFCQDILHLDPDEWQDKVLDDLAKFPKVSVRSGQGVGKT 62
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA 151
L A +LW ++ RP VI A + QL LWAEV+KWL+ K + ++
Sbjct: 63 ALEAGAILWFLTCRPYAKVIATAPTMKQLYDVLWAEVAKWLNNSLIKDLLKWTKTKIYMV 122
Query: 152 PWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGI 211
DS+ + RT + +P+ G H + M I+ DEASG D I I
Sbjct: 123 G------------DSERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVADPIMEAI 167
Query: 212 LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA 271
LG L+ + +M NP + G FY+ N D ++ ++ + + + + +I
Sbjct: 168 LGTLSGFDNK--LLMCGNPNNIEGVFYDSHNTDRDKYRTHKVSSYDSKRTNKENIQMLID 225
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---REPCPDPYAPLIMGCDIAEEG 328
+YG +SDV RV + G+FP+ +DSFI L I+E A + + +G D+A G
Sbjct: 226 KYGENSDVARVRIYGEFPKGALDSFISLEIVEFAKDINISDSELKHVREGHIGVDVARFG 285
Query: 329 GDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA-------IIIDANNTGA 381
D+T+V R G +SK D T ++ ++ D I +D G
Sbjct: 286 DDSTIVFPRIGAKALPFEKYSKQDTMQTTGRVLKAAKRMMDDYPTIKKVFIKVDDTGVGG 345
Query: 382 RTCDYLEM------LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF--------- 426
D L+ L Y V V + + D ++ N+ T++ + + LE
Sbjct: 346 GVTDRLKEVISDEKLPYEVIPVNNGESSTD-DYYANKGTQIWGDVKELLEQNISNSINGQ 404
Query: 427 ---ASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
L +++ LI+ L S + F + + G++ +ESK + + S D +D L F E
Sbjct: 405 GPTIELPDNANLIKEL-STRKFKMTSNGKIRLESKEDMKKRNVGSPDIADALTLAFYEP 462
>gi|332981151|ref|YP_004462592.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
gi|332698829|gb|AEE95770.1| hypothetical protein Mahau_0567 [Mahella australiensis 50-1 BON]
Length = 461
Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats.
Identities = 130/445 (29%), Positives = 197/445 (44%), Gaps = 50/445 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ E ++ + + + A+ +G G+GKT L AW +LW + TRP +
Sbjct: 27 PDDWQAETLQALADN------------PRVAVRSGHGVGKTALEAWALLWFLFTRPYPKI 74
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
C A + QL LWAE SKWL P K +FE Q + + +
Sbjct: 75 PCTAPTREQLHDILWAEASKWLERAPALKPYFEWQKTRIVQKQY------------PGRW 122
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
RT + +P+ G H + + I DEASG D I I G LT +A +M N
Sbjct: 123 FATARTSN--KPENMAGFHEEH-LLFIIDEASGIADNIFETIEGALTTSDAK--LLMCGN 177
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
P + SG F++ F K + ++ + + + E + +Y DSDV RV V G+FP
Sbjct: 178 PTKNSGVFHDAFFKDRSLYWTRKVSCLDSQRVTLEYAERLKRKYHEDSDVYRVRVLGEFP 237
Query: 290 QQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS 349
+ + D+FI L+I+E A R+ PD L +G D+A G D TV+ R G + +L ++
Sbjct: 238 KAEPDTFISLDIVEAATMRDVEPD--GVLEIGVDVARFGDDETVLAARAGLKLVYLKAYT 295
Query: 350 KTDLRTTNNKISGLVEKYRPDA------IIIDANNTGARTCDYLEM------LGYHVYRV 397
K D TT L + + I ID + G D L V
Sbjct: 296 KQDTMTTAGYAIALAKDLMKECGKPKCTIKIDDDGVGGGVTDRCREVVREEKLYIDVIDC 355
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEF--ASLINHSGLIQNLKSLKSFIVPNTGELAI 455
D E N TE + D L+ A LIN LI L + + + + + G++A+
Sbjct: 356 HNGGAPEDKEHYENWGTEAWAYLRDLLQDEQAELINDEDLIGQLTT-RKYRITSKGKIAL 414
Query: 456 ESK---RVKGAKSTDYSDGLMYTFA 477
ESK + +G S D +D ++ +A
Sbjct: 415 ESKDEMKRRGLMSPDRADAVVLAYA 439
>gi|257883493|ref|ZP_05663146.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|294614775|ref|ZP_06694675.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
gi|294622490|ref|ZP_06701512.1| conserved hypothetical protein [Enterococcus faecium U0317]
gi|257819151|gb|EEV46479.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|291592387|gb|EFF23996.1| hypothetical protein EfmE1636_0865 [Enterococcus faecium E1636]
gi|291598037|gb|EFF29147.1| conserved hypothetical protein [Enterococcus faecium U0317]
Length = 471
Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats.
Identities = 119/470 (25%), Positives = 198/470 (42%), Gaps = 50/470 (10%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
+ P ++ + + + +V N E K ++ +G+G+GKT L A +LW ++ RP
Sbjct: 18 YYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTALEAGAILWFLTCRP 77
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
VI A + QL LWAEV+KWL+ K+ + ++ DS
Sbjct: 78 YAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG------------DS 125
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ + RT + +P+ G H + M I+ DEASG D I ILG L+ + +M
Sbjct: 126 ERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAILGTLSGFDNK--LLM 180
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
NP + G FY+ N D ++ ++ + + + E I+ +YG +SDV RV + G
Sbjct: 181 CGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKYGKESDVARVRIFG 240
Query: 287 QFPQQDIDSFIPLNIIEEALNR---EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
+FP+ +DSFI L +E A + + + +G D+A G D+T++ R
Sbjct: 241 EFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDDSTILFPRIATRAL 300
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDA-------IIIDANNTGARTCDYLEM------L 390
+SK T + + + I +D G D LE
Sbjct: 301 EYEKYSKRSTMETTGYVINMAKNLMSQYPSIDKVMIKVDDTGVGGGVTDRLEELIEDKHY 360
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF------------ASLINHSGLIQN 438
+ V+ V + D +F N T+L + + LE L + S LI+
Sbjct: 361 PFEVFGVNNGSTSED-DFYDNLGTQLWGNIKEMLEENMTANLNGEQPVIELPSDSSLIKE 419
Query: 439 LKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDM 485
L S + F + + + +ESK + + S D +D L F E P
Sbjct: 420 L-STRKFKMTSRSRIRLESKDDMKKRNIGSPDIADALALAFYEPPSHYQF 468
>gi|261208032|ref|ZP_05922709.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289567088|ref|ZP_06447483.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|260077749|gb|EEW65463.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289161103|gb|EFD09008.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
Length = 471
Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats.
Identities = 119/470 (25%), Positives = 198/470 (42%), Gaps = 50/470 (10%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
+ P ++ + + + +V N E K ++ +G+G+GKT L A +LW ++ RP
Sbjct: 18 YYDKPVAFCQDILHLNPDEWQENVLNDLAEFSKVSVRSGQGVGKTALEAGAILWFLTCRP 77
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
VI A + QL LWAEV+KWL+ K+ + ++ DS
Sbjct: 78 YAKVIATAPTMKQLYDVLWAEVAKWLNDSLIKNLLKWTKTKIYMVG------------DS 125
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ + RT + +P+ G H + M I+ DEASG D I ILG L+ + +M
Sbjct: 126 ERWFATARTAT--KPENMQGFHEDH-MLIVVDEASGVSDPIMEAILGTLSGFDNK--LLM 180
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
NP + G FY+ N D ++ ++ + + + E I+ +YG +SDV RV + G
Sbjct: 181 CGNPNNIEGVFYDSHNSDRDKYRVHKVSSYDSKRTNKDNIEMILKKYGKESDVARVRIFG 240
Query: 287 QFPQQDIDSFIPLNIIEEALNR---EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
+FP+ +DSFI L +E A + + + +G D+A G D+T++ R
Sbjct: 241 EFPKGALDSFISLETVELATEKQISDSLVNKTTVAHIGVDVARYGDDSTILFPRIATRAL 300
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDA-------IIIDANNTGARTCDYLEM------L 390
+SK T + + + I +D G D LE
Sbjct: 301 EYEKYSKRSTMETTGYVINMAKNLMSQYPSIDKVMIKVDDTGVGGGVTDRLEELIEDKHY 360
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF------------ASLINHSGLIQN 438
+ V+ V + D +F N T+L + + LE L + S LI+
Sbjct: 361 PFEVFGVNNGSTSED-DFYDNLGTQLWGNIKEMLEENMTANLNGEQPVIELPSDSSLIKE 419
Query: 439 LKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDM 485
L S + F + + + +ESK + + S D +D L F E P
Sbjct: 420 L-STRKFKMTSRSRIRLESKDDMKKRNIGSPDIADALALAFYEPPSHYQF 468
>gi|308069786|ref|YP_003871391.1| hypothetical protein PPE_03030 [Paenibacillus polymyxa E681]
gi|305859065|gb|ADM70853.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 452
Score = 318 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 120/467 (25%), Positives = 184/467 (39%), Gaps = 60/467 (12%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
P WQ + + + + ++ +G+G+GKT L A LW +S P
Sbjct: 5 YPDDWQASTLMDLANN------------PRVSVRSGQGVGKTGLEAATALWFLSCFPYPK 52
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
VIC A + QL LWAE++KW S P K + ++ + +
Sbjct: 53 VICTAPTRQQLHDVLWAEINKWQSKSPVLKRILKWTKTKIYMKNYE------------ER 100
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ RT + +P+ G H Y M I DEASG D I ILG L+ +M
Sbjct: 101 WFATARTAT--KPENMQGLHEDY-MLFIVDEASGVADPIMEAILGTLSGEFNK--ILMCG 155
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
NP + SG FY+ NK D+K ++ + +YG SDV RV V G+F
Sbjct: 156 NPTKTSGVFYDSHNKDRADYKTRKVSCLDSPRTSKDNIAMLKRKYGEGSDVWRVRVEGEF 215
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW 348
P+ D+FI L + E A L +G D+A G D T + GP I
Sbjct: 216 PRGGSDTFISLEVAEFAAKEVKLEPTGDMLTIGVDVARFGDDETSMFAGIGPRIVGEHHH 275
Query: 349 SKTDLRTTNNKISGLVEKYRPDA-------IIIDANNTGARTCDYLEM------LGYHVY 395
K T + L ++ + I +D + G D L L Y +
Sbjct: 276 FKKGTMVTAGWVINLAKELQVAHPYLNRIRIRVDDSGVGGGVTDRLSEIVAEEGLPYEII 335
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFA------------SLINHSGLIQNLKSLK 443
+ ++D E N TE+ + + LE L + LI L + +
Sbjct: 336 PINNGSSSLD-EHYGNLVTEMWASIKEQLEQNMSNFMNGDSSILQLPDDDVLITQLTA-R 393
Query: 444 SFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
+ + + G++ +ESK + +G KS D +D + TF E D
Sbjct: 394 KWNMTSKGKMLLESKKDMKKRGLKSPDRADAFVLTFGEYLIEPDTHI 440
>gi|332980681|ref|YP_004462122.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
gi|332698359|gb|AEE95300.1| hypothetical protein Mahau_0077 [Mahella australiensis 50-1 BON]
Length = 486
Score = 313 bits (801), Expect = 4e-83, Method: Composition-based stats.
Identities = 115/510 (22%), Positives = 191/510 (37%), Gaps = 88/510 (17%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ ++L M +D + F +L PW + Q++ + V +
Sbjct: 3 DKVQVRQLAQKMQNDPVW--FVIEILGTRPWKK--------------QIDIISAVRDN-- 44
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
+ A+ + G GK+ + ++LW + + V+ A + Q++ +W E
Sbjct: 45 ----------PRTAVRSCHGAGKSFIAGQVILWFLYSFYPSIVLSTAPTWRQVEKLIWKE 94
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
V P + I + + S PD F G
Sbjct: 95 VRASYRRSKV------------PLGGNLLPKRPEIQIIQDEWYAVGL--STNEPDRFQGF 140
Query: 188 HNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
H + ++ DEA+G P+ I I G LT +A ++ NP + G FY F P
Sbjct: 141 H-EENILVVVDEAAGVPEEIFEAIEGVLTSEHAR--LLLLGNPTSVGGTFYNAFRTP--G 195
Query: 248 WKRFQIDTRTVEG-----------------------------IDPSFHEGIIARYGLDSD 278
W+ I T I P++ R+G +S
Sbjct: 196 WENISISAFTTPNFTAFGITEDDIINKTWESKITNSLPNPKLITPAWVADKYRRWGPNSP 255
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
+ V GQFP + D+ IPL IE A+ R P+ +G D+A G D TV+ RR
Sbjct: 256 AYQARVLGQFPSEGEDTLIPLAWIEAAMARWEDTPEGEPIEIGVDVARFGSDKTVIAARR 315
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
G + L ++K D T I + K +D GA D L+ G+ V +
Sbjct: 316 GQKVLPLNVYAKQDTMETVGCIIMVHRKIGASKTKVDVIGVGAGVVDRLKEQGHPVIGIN 375
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWL--------EFASLINHSGLIQNLKSLKSFIVPNT 450
+ A D E N R+EL M + L E +L L+ +L +K + + +
Sbjct: 376 VAEAATDTEKFANLRSELWWNMRELLDPNQRLNPEPIALPPDDELLADLSGVK-YKIDSR 434
Query: 451 GELAIESK---RVKGAKSTDYSDGLMYTFA 477
G + +ESK + + +S D +D ++ FA
Sbjct: 435 GRIQVESKEDMKKRLGRSPDRADAVVLAFA 464
>gi|332976102|gb|EGK12970.1| hypothetical protein HMPREF9374_1123 [Desmospora sp. 8437]
Length = 462
Score = 312 bits (800), Expect = 7e-83, Method: Composition-based stats.
Identities = 124/449 (27%), Positives = 198/449 (44%), Gaps = 51/449 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ ++ + + + A+ AG G+GKT AW VLW + TRP +
Sbjct: 33 PDEWQDIALQALADNQ------------RVAVRAGHGVGKTATEAWAVLWFLLTRPFPKI 80
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
C A ++ QL LW E++KWL P + E Q + + + +
Sbjct: 81 PCTAPTKPQLMDVLWPEIAKWLMNAPELAPYVEWQKTRVVMKQYE------------ERW 128
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
RT + +P+ G H + + +I DEASG + I I G LT + +M N
Sbjct: 129 FATARTSN--KPENMAGFHEEHLLFVI-DEASGVDNAIFETIDGALTTAGSK--LVMFGN 183
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
P R +G FY+ F++ D + ++I + + + +YG DSD+ RV V G+FP
Sbjct: 184 PTRTNGVFYDAFHQDRDLYWTYKISCLDSKMASKDYARNMARKYGEDSDIYRVRVQGEFP 243
Query: 290 QQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS 349
Q D DSFIPL ++E+A R+ L +G D+A G D TV+ R GPV L +
Sbjct: 244 QGDPDSFIPLELVEDARVRDLEWIDEDELHIGVDVARFGSDETVLAARIGPVAFRLDRYG 303
Query: 350 K-TDLRTTNNKI----SGLVEKYRPDAII--IDANNTGARTCDYLEM------LGYHVYR 396
T T ++ L+E++R D + +D G D L+ L V
Sbjct: 304 GRTPTTETVGRVLALARELMEEHRRDYAVVKVDDTGVGGGVTDQLQEIVAEEGLNIDVIP 363
Query: 397 VLGQKRAV-DLEFCRNRRTELHVKMADWLEFASL---INHSGLIQNLKSLKSFIVPNTGE 452
D + + TE + D + + I+ LI L + + + + G+
Sbjct: 364 CNNGATPEHDPDHYHDWGTESWGTLLDRFKAGEIALKIDDEDLIGQLTT-RKKEMTSKGK 422
Query: 453 LAIESK---RVKGAKSTDYSDGLMYTFAE 478
+ +ESK + +G +S D +D L+ FAE
Sbjct: 423 IKLESKEKMKKRGQRSPDRADALVLAFAE 451
>gi|254781187|ref|YP_003065600.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040864|gb|ACT57660.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 367
Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats.
Identities = 251/356 (70%), Positives = 297/356 (83%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M R + T+ + EQ+L +++ E LSF NFV+ FFPWG KG PLE FS P WQLEFME
Sbjct: 1 MPRLISTDQKLEQELHEMLMHAECVLSFKNFVMRFFPWGIKGKPLEHFSQPHRWQLEFME 60
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
VD HC ++VNN NP +FK AISAGRGIGKTTLNAW++LWL+STRPG+S+IC+ANSETQL
Sbjct: 61 AVDVHCHSNVNNSNPTIFKCAISAGRGIGKTTLNAWMMLWLISTRPGMSIICIANSETQL 120
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K TLWAEVSKWLS+LP++HWFEMQSLSLHP+ WY+++L S+GIDSKHY+ CRTYSEER
Sbjct: 121 KNTLWAEVSKWLSMLPHRHWFEMQSLSLHPSGWYAELLEQSMGIDSKHYTITCRTYSEER 180
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
PDTFVG HNT+GMA+ NDEASGTPD+IN ILGF TE N NRFWIMTSN RRL+G FY+I
Sbjct: 181 PDTFVGPHNTHGMAVFNDEASGTPDIINKSILGFFTELNPNRFWIMTSNTRRLNGWFYDI 240
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
FN PL+DWKR+QIDTRTVEGID FHEGII+RYGLDSDV R+E+ GQFPQQ++++FIP N
Sbjct: 241 FNIPLEDWKRYQIDTRTVEGIDSGFHEGIISRYGLDSDVARIEILGQFPQQEVNNFIPHN 300
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
IEEA++RE D YAPLIMGCDIA EGGD TVVV RRG +IEH+FDWS ++ T
Sbjct: 301 YIEEAMSREAIDDLYAPLIMGCDIAGEGGDKTVVVFRRGNIIEHIFDWSAKLIQET 356
>gi|323486060|ref|ZP_08091391.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
WAL-14163]
gi|323400627|gb|EGA92994.1| hypothetical protein HMPREF9474_03142 [Clostridium symbiosum
WAL-14163]
Length = 476
Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats.
Identities = 119/457 (26%), Positives = 185/457 (40%), Gaps = 62/457 (13%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ + + + K AI +G+G+GKT + A +LW + P +
Sbjct: 36 PDDWQKQALMDLAE------------SPKVAIKSGQGVGKTGMEAVALLWFLCCYPYPRI 83
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLP-NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ A ++ QL LW+EVSKW+S P + ++ K +
Sbjct: 84 VATAPTKQQLHDVLWSEVSKWMSKSPLLSDILKWTKTYIYMVGNE------------KRW 131
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ RT + +P+ G H M I DEASG D I ILG L+ N +M N
Sbjct: 132 FAVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLSGANNK--LLMCGN 186
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
P R SG FY+ FN ++ + + + + E +I +YG DS+V V V G+FP
Sbjct: 187 PTRTSGTFYDAFNVDRSIYRCHTVSSADSKRTNKQNIESLIRKYGKDSNVVLVRVFGEFP 246
Query: 290 QQDIDSFIPLNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW 348
+Q+ D FI L+I+E + D P + G D+A G D TV+ G I +
Sbjct: 247 KQEDDVFIALSIVEHCCMLDLPDDVPIKRISFGVDVARYGSDETVIAKNVGGRITLPVSF 306
Query: 349 SKTDLRTTNNKISGLVEK--------YRPDAIIIDANNTGARTCDYLEMLGYH------- 393
L TT KI L + I ID G D LE +
Sbjct: 307 RGQSLMTTVGKIVQLYRQAITEFPRYRGKIYINIDDCGLGGGVTDRLEEVKQEEKLTRMV 366
Query: 394 VYRVLGQKRAVDL----------EFCRNRRTELHVKMADWL--EFASLINHSGLIQNLKS 441
+ V + + + N T L + D L E SL N + L+
Sbjct: 367 IVPVNAAGKVPEETLGDGKQKACDIYDNMTTYLWGTVKDALMMEEVSLENDNELVAQFTC 426
Query: 442 LKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYT 475
+ + + + G++ +ESK + +G S D +D + +
Sbjct: 427 -RKYRLTSRGKMLLESKEEMKKRGIDSPDRADAVALS 462
>gi|255282256|ref|ZP_05346811.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
gi|255267204|gb|EET60409.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
Length = 506
Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 110/477 (23%), Positives = 187/477 (39%), Gaps = 52/477 (10%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P + E ++ E + A+ +G+G+GKT + A VLW +S V
Sbjct: 38 PVLYAREVLQFEPDEWQRDALMDLAEESRVAVKSGQGVGKTGIEAVAVLWFLSCFRYARV 97
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLP-NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ A + QL LW+E++KW P K ++ + K +
Sbjct: 98 VATAPTRQQLHDVLWSEIAKWQERSPLLKAILRWTKTYVYVKGYE------------KRW 145
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ RT + +P+ G H M I DEASG D I +LG L+ N +M N
Sbjct: 146 FAVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAVLGTLSGGNNK--LLMCGN 200
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
P R +G FY+ F K + + + D + + +I +YG DS++ RV V G FP
Sbjct: 201 PTRTTGTFYDAFTKDRSIFACHTVSSLDSSRTDKNNIDALIRKYGEDSNLVRVRVKGLFP 260
Query: 290 QQDIDSFIPLNIIEEALNREPCPDPYAPL---IMGCDIAEEGGDNTVVVLRRGPVIEHLF 346
+QD D FI +I++ +R+ + I+G D+A G D TV+ I+ +
Sbjct: 261 KQDDDVFISQELIDQCTSRQYELPESRGMAQVILGVDVARYGNDETVIYRNFKGRIKMVR 320
Query: 347 DWSKTDLRTTNNKISGLVEK--------YRPDAIIIDANNTGARTCDYLEMLGYH----- 393
+ +L T I I ID G D L +
Sbjct: 321 NRRGQNLMATAGDIVREYRHIVDGYPGFDGKIYINIDDTGLGGGVTDRLREVKKEQKLTR 380
Query: 394 --VYRVLGQKRAVD--------LEFCRNRRTELHVKMADWLEFAS--LINHSGLIQNLKS 441
+ + ++ E+ N T + + + LE + + + + L S
Sbjct: 381 MVIIPINAAEKIETDTKAGKEAAEYYNNLTTHMWAAVRELLEKREIVIEDDAETVAQL-S 439
Query: 442 LKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
++ + V + G++ IE K + +G S D +D L T + + G P+ +
Sbjct: 440 MRKYTVASNGKIEIEPKKEMKKRGLDSPDRADAL--TLSCYLGKIKKHTGAAPNEKA 494
>gi|319956916|ref|YP_004168179.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
16511]
gi|319419320|gb|ADV46430.1| hypothetical protein Nitsa_1177 [Nitratifractor salsuginis DSM
16511]
Length = 462
Score = 292 bits (747), Expect = 9e-77, Method: Composition-based stats.
Identities = 111/403 (27%), Positives = 173/403 (42%), Gaps = 24/403 (5%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
K +I +G G GKTTL AW+VLW R + A + QL L E+ KW +P +
Sbjct: 45 KISIRSGHGTGKTTLLAWIVLWWGLGREDAKIPMTAPTGHQLYDLLMPEIRKWREKMPVQ 104
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ + + RT +++P+ G H T II D
Sbjct: 105 ----------YQNEVEVKTEKIDFANGN---FAVPRTARKDQPEALQGFHATNLAFII-D 150
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
EASG P VI G +T + IM +NP R G FY+ +K W+ FQ +
Sbjct: 151 EASGIPQVIFEVAEGAMTGEST--LVIMAANPTRTEGYFYDSHHKNRWQWECFQFNAEES 208
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
E + + E +YG DSDV RV + G+FP+Q ++ L +++A RE D
Sbjct: 209 ENVSKEWIEEKKRQYGEDSDVYRVRIKGEFPRQSSNAVFSLQEVDDATTRE-IVDDSGAE 267
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLV--EKYRPDAIIIDA 376
+ G D+A+ G D +V+ R+G + S L + K +P I +DA
Sbjct: 268 VWGLDVADFGDDKSVLAKRKGKHFHEITARSGLTLPDLAGWLIYEYNQAKRKPAVIFVDA 327
Query: 377 NNTGARTCDYLEMLGYH-VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL 435
G+ G V V G A + E N+R E + + D LE + + L
Sbjct: 328 IGIGSSLPAVCFEKGLDIVIGVKGSNSASNSEKYHNKRAEWYYNLKDLLEDGKIPDDDEL 387
Query: 436 IQNLKSLKSFIVPNTGELA-IESK--RVKGAKSTDYSDGLMYT 475
+ L + K + + +TG++ +E K + + +S D +D T
Sbjct: 388 VGELMAQK-YQISSTGKIQLVEKKEIKKELGRSPDKADACALT 429
>gi|167767949|ref|ZP_02440002.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
gi|167710278|gb|EDS20857.1| hypothetical protein CLOSS21_02492 [Clostridium sp. SS2/1]
gi|291560988|emb|CBL39788.1| hypothetical protein CL2_30180 [butyrate-producing bacterium SSC/2]
Length = 473
Score = 289 bits (738), Expect = 8e-76, Method: Composition-based stats.
Identities = 117/482 (24%), Positives = 183/482 (37%), Gaps = 59/482 (12%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEG---FSAPRSWQLEFMEVVDAHCLNSVNNPNPE 76
D + F V W + F P WQ E + +
Sbjct: 1 MDDRVLHDFL--VESIPLWQQNPVQFFEEVLFFYPDEWQKEAAFALRDN----------- 47
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
K I +G+G+GKT A +LW +S V+ A + QL LWAEVSKW S P
Sbjct: 48 -SKVTIKSGQGVGKTGFEAATLLWFLSCFENARVVATAPTLHQLNDVLWAEVSKWQSKSP 106
Query: 137 -NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
K + + + + + RT + P+ G H M
Sbjct: 107 LLKEILQWTKTKISMIG------------SKERWYAVARTAT--TPENMQGFHEDN-MLF 151
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
I DEASG D I ILG LT N ++ NP + SG FY+ + +++
Sbjct: 152 IVDEASGVADPIMEAILGTLTGSNNK--LLLCGNPTKASGTFYDSHTSDRKLYYCITVNS 209
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ + + +I +YG +S+V RV V G FP+QD D ++PL ++E A P
Sbjct: 210 AESKRTNKDNIDSLIRKYGEESNVVRVRVKGLFPKQDDDVYMPLEMLE-ASIILEEIPPA 268
Query: 316 APLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK-------YR 368
+G D+A G D+TV+ I DL T + +
Sbjct: 269 DICTLGVDVARFGDDDTVIARNMNNKITLEKIRHGQDLMKTVGDVVVECRNIKEKFKYKK 328
Query: 369 PDAIIIDANNTGARTCDYLEML-------GYHVYRVLGQKRAVDL---EFCRNRRTELHV 418
+IID G D L L G + V D E + +
Sbjct: 329 TIYVIIDDTGLGGGVTDRLNELKSEGKLSGVVIVPVNFSAAVPDKKAAEKYHDITSYAWS 388
Query: 419 KMADWLEFAS--LINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLM 473
+ D LE L N + LI L + + + + ++G++ +ESK + + +S D +D ++
Sbjct: 389 ILRDMLEEKEAVLPNDTELIAQLSA-RKYDLSSSGKIRLESKKAMKERIGESPDRADAVV 447
Query: 474 YT 475
+
Sbjct: 448 LS 449
>gi|160940775|ref|ZP_02088117.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
BAA-613]
gi|158436295|gb|EDP14062.1| hypothetical protein CLOBOL_05669 [Clostridium bolteae ATCC
BAA-613]
Length = 484
Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats.
Identities = 110/492 (22%), Positives = 179/492 (36%), Gaps = 72/492 (14%)
Query: 41 KGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW 100
L P + + + + + ++ +G GIGK+ + AW V+W
Sbjct: 4 SDAVLFYADNPIYFVEDVIRAKPDEKQRDILRSLRDYPMTSVRSGHGIGKSAVEAWSVIW 63
Query: 101 LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLH 159
M TRP + C A +E QL LWAE+SKW+ P + L+
Sbjct: 64 YMCTRPFPKIPCTAPTEHQLMDVLWAEISKWMRNNPALRDDLIWTKEKLYMQG------- 116
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + + RT + P+ G H + + I DEASG D + +LG +T +
Sbjct: 117 -----HPEEWFAVPRTAT--NPEALQGFHAEH-VLYIIDEASGVSDKVFEPVLGAMTGED 168
Query: 220 ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
A +M NP RL+G FY+ ++ + + +D R + + +F + II +G DSDV
Sbjct: 169 AK--LLMMGNPTRLAGFFYDSHHRNREQYSAIHVDGRDSQHVSRTFVQKIIDMFGEDSDV 226
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV-LRR 338
RV V GQFP+ DS I + EEA N + P + +G D+A G D++ + L
Sbjct: 227 FRVRVAGQFPKSTPDSLIAMEWCEEAANLQV-YAPGGQIDIGVDVARYGDDSSALYPLID 285
Query: 339 GPVIEHLFDWSKTDLRTTNN----KISGLVEKYRPDAIII--DANNTGARTCD------- 385
+ I Y AI + D + G D
Sbjct: 286 KKQSLPYELYHHNRTTEIAGYVVIMIKQFAMDYPDAAIRVKVDCDGLGVGVYDNLYDQRD 345
Query: 386 ---------YLEMLGYH-------------------VYRVLGQKRA-----VDLEFCRNR 412
G + + D N
Sbjct: 346 QIIDAIWYDRCRRAGINPEDGNQWNECQNVPKLDLEIIECHFGGSGGKVDDNDPVEYSNS 405
Query: 413 RTELHVKMADWLEFASL--INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTD 467
+ K+ +L+ L + L+ L + ++V G+L +E K + +G S D
Sbjct: 406 TGLMWGKVRKYLQEGKLQLPDDDTLVSQL-CNRRYLVNKDGKLELERKESMKKRGLTSPD 464
Query: 468 YSDGLMYTFAEN 479
+D L E
Sbjct: 465 IADALALALYEP 476
>gi|266623290|ref|ZP_06116225.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
gi|288864932|gb|EFC97230.1| putative terminase B protein [Clostridium hathewayi DSM 13479]
Length = 484
Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats.
Identities = 107/493 (21%), Positives = 189/493 (38%), Gaps = 72/493 (14%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
L P + + + V + + ++ +G G+GK+ + +W V+
Sbjct: 3 SDDAVLFYADEPIYFVEDIIRVTPDQKQRDILRSLRDYPMTSVRSGHGVGKSAVESWSVI 62
Query: 100 WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVL 158
W + TRP + C A ++ QL LWAE+SKWL P K+ ++ +
Sbjct: 63 WFLCTRPFPKIPCTAPTQHQLYDILWAEISKWLRNNPELKNDIIWTQQRVYMNGY----- 117
Query: 159 HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER 218
+ + + RT + P+ G H + + I DEASG D + +LG +T
Sbjct: 118 -------PEEWFAVPRTAT--NPEALQGFHAEH-VLYIIDEASGVSDKVFEPVLGAMTGE 167
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
+A +M NP RLSG F++ +K ++ ID R + ++ F + II +G+DSD
Sbjct: 168 DAK--LLMMGNPTRLSGFFFDSHHKSRSEYSAMHIDGRDSQHVNQKFVQKIINMFGMDSD 225
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV-LR 337
V RV V GQFP+ DS I ++ E A +P + +G D+A G D++ + +
Sbjct: 226 VFRVRVAGQFPKSTPDSLIMMDWCEAATQLKPE-TVRNRVDIGVDVARYGDDSSALYPVI 284
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA------IIIDANNTGARTCDYLE--- 388
+ + + + ++++Y + + +D + G D L
Sbjct: 285 DKVQSDGYELYHHNRTTEISGYVVQMIKRYAVECLDAVIRVKVDCDGLGVGVYDNLYDLT 344
Query: 389 --------------------------------MLGYHVYRVLGQKRA-----VDLEFCRN 411
L + D N
Sbjct: 345 DQIIDEVWRDRCRREGLDPDNGNQWNECQRIPQLDLEIVECHFGAAGGKIDEDDPVEYSN 404
Query: 412 RRTELHVKMADWLEFASL--INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKST 466
+ K+ L+ +L + LI L S + +IV G+L +E K + +G S
Sbjct: 405 STGLMWGKIRKLLQTGALQIPDDDALISQL-SNRRYIVNKDGKLELERKEAMKKRGLPSP 463
Query: 467 DYSDGLMYTFAEN 479
D +D L +
Sbjct: 464 DIADALALALYDP 476
>gi|253578914|ref|ZP_04856185.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849857|gb|EES77816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 473
Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats.
Identities = 106/452 (23%), Positives = 179/452 (39%), Gaps = 50/452 (11%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
P + E + K +I +G+G+GKT L A + LW ++ P
Sbjct: 4 DDPVMFFREVLNFEPDEWQAQAARDLAANPKVSIKSGQGVGKTGLEAAVFLWFVTCFPHP 63
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLP-NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
++ A ++ QL LW+E+SKW+S + ++ + K
Sbjct: 64 RIVATAPTKQQLHDVLWSEISKWMSKSELLSILLKWTKTYVYMVG------------EEK 111
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + RT + +P+ G H M I DEASG D I ILG L+ N ++
Sbjct: 112 RWFGVARTAT--KPENMQGFHEDN-MLFIVDEASGVADPIMEAILGTLSGANNK--LLLC 166
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
NP + SG FY+ + +K + + + + ++ +YG DS+V RV V G+
Sbjct: 167 GNPTKTSGTFYDSHTRDRALYKCHTVSSMDSTRTNKENIDSLVRKYGWDSNVVRVRVRGE 226
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAPLI---MGCDIAEEGGDNTVVVLRRGPVIEH 344
FP Q+ D FIPL++IE+ ++ D + +G D+A G D T++ +
Sbjct: 227 FPNQEDDVFIPLSLIEQCSSKLLELDDADGMQFVSLGVDVARFGDDETIIYRNYHGHCKI 286
Query: 345 LFDWSKTDLRTTNNKISGLVEK-YRPD-------AIIIDANNTGARTCDYLEM------- 389
+ + +L T I +K YR + ID G D L+
Sbjct: 287 VRNRRGQNLMATVGDIVQEFKKIYREHPTYESKVYVQIDDTGLGGGVTDRLKEVRKEQKL 346
Query: 390 LGYHVYRVLGQKRAVD--------LEFCRNRRTELHVKMADWLEFAS--LINHSGLIQNL 439
V + ++ E N T + M D L+ + + I L
Sbjct: 347 YKMQVIPINAAEKIETDTAAGKDAAERYNNLTTAMWASMRDLLDNKQIVIEDDEQTIGQL 406
Query: 440 KSLKSFIVPNTGELAIESK---RVKGAKSTDY 468
S + + + + G+L IE K + +G S D
Sbjct: 407 SS-RKYTMASNGKLEIEPKKEMKKRGLDSPDR 437
>gi|83593922|ref|YP_427674.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
gi|83576836|gb|ABC23387.1| hypothetical protein Rru_A2590 [Rhodospirillum rubrum ATCC 11170]
Length = 505
Score = 256 bits (654), Expect = 6e-66, Method: Composition-based stats.
Identities = 109/495 (22%), Positives = 180/495 (36%), Gaps = 61/495 (12%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNP-NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
P + + + +V + + P K + AG G+GKTT A + W +
Sbjct: 9 PVLYARQRLGMVPTAQQAGLLSAIAPAGAKVTVRAGHGVGKTTATAAAIWWHLECFDYSK 68
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP-WYSDVLHCSLGIDSKH 168
C A + +QL+ LW+E+++ + +L + + +
Sbjct: 69 TPCTAPTASQLEQILWSELARLRRRADARAQGTGLPAALRLEALFAVSGRAIADRGTPRE 128
Query: 169 YSTMCRTYSEERPDTFVGHHNTYG------------------MAIINDEASGTPDVINLG 210
+ + RT ++PD G H + + + +EASG PD +
Sbjct: 129 WFVVARTARRDQPDALQGFHASDIDLEAGAGPRLSAKSGGAALMFVIEEASGVPDAVFEV 188
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGII 270
G L+ A +M NP R +G F + + ++ +DP + G++
Sbjct: 189 AEGALSSPGAR--LLMVGNPTRNTGFFARSHKRDRASFTALRLRCADSPLVDPGYRAGLV 246
Query: 271 ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE--PCPDPYAPLIMGCDIAEEG 328
+YG +S+V RV G FP+QD D I L E AL R +G D+A G
Sbjct: 247 RKYGAESNVVRVRADGAFPRQDDDVLIALETAEAALARPLPARMATEDERRLGVDVARFG 306
Query: 329 GDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
D TV +LR GPV+ + + D + L E +R I +D GA D L
Sbjct: 307 DDRTVFLLRIGPVVGAIEVTAGRDTMAVAGRARRLAEIWRAGRIYVDEIGVGAGVVDRLR 366
Query: 389 MLG----YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF------------------ 426
G +RA E R R L + + WL
Sbjct: 367 EDGAPVVAVNVAASAPERAAGEERGRLLRDHLWLMVRGWLRDEAPVFAGPGGGPASGSAA 426
Query: 427 --------ASLIN-HSGLIQNL---KSLKSFIVPNTGELAIESK---RVKGAKSTDYSDG 471
+ + L Q+L + + +G + +ESK + +G +S D +D
Sbjct: 427 GLLSGMGSCLVPGVDADLAQDLAGELATPRYAFDGSGRVVVESKDAMKRRGLRSPDLADA 486
Query: 472 LMYTFAENPPRSDMD 486
L TF E +
Sbjct: 487 LALTFHEAAAAGRVA 501
>gi|153810665|ref|ZP_01963333.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
gi|149833061|gb|EDM88143.1| hypothetical protein RUMOBE_01049 [Ruminococcus obeum ATCC 29174]
Length = 469
Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats.
Identities = 118/476 (24%), Positives = 187/476 (39%), Gaps = 68/476 (14%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P Q + + + + + ++ +G GIGK+ + AW V+W M T P +
Sbjct: 26 PDPEQKKILRSLVENQM------------TSVRSGHGIGKSAVEAWSVIWFMCTHPYPKI 73
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKH-WFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
C A ++ QL LWAE+SKW L+ ++ +
Sbjct: 74 PCTAPTQHQLFDILWAEISKWKRNNKTLDSELIWTKEKLYM------------KGHAEEW 121
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ RT S PD G H + M I DEASG D I +LG L+ A +M N
Sbjct: 122 FAVARTAS--TPDALQGFHAEH-MLYIIDEASGVEDKIFEPVLGALSTPGAK--LLMCGN 176
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
P +LSG FY+ NK + + F ID R + F + II YG DSDV RV V G FP
Sbjct: 177 PTQLSGFFYDSHNKNREQYSTFHIDGRNSTRVSQEFVQTIINMYGEDSDVFRVRVAGDFP 236
Query: 290 QQDIDSFIPLNIIEEALNREPCPDPYAPLI-MGCDIAEEGGDNTVVVLRRGPVIEHLFDW 348
+ D +IPL ++E+++ E P + +I +GCD+A G D TV+ R ++
Sbjct: 237 LAEDDIYIPLPLVEKSIATEYFPRRHPQIIHIGCDVARFGTDKTVIGYRTDEKVQFFKKR 296
Query: 349 SKTDLRTTNNKISGLVEKYRPDAII-----------IDANNTGARTCDYLEMLGYH---- 393
D T + I L + ID G D L + +
Sbjct: 297 VGQDTMKTADDIVSLGMLLVYQYGLKPDIDEPIPIKIDDGGVGGGVVDRLRQIKRNNPER 356
Query: 394 -----VYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-----------FASLINHSGLIQ 437
VY V ++ F + T + + L+ L + L+
Sbjct: 357 FWWMEVYPVKFGQKIRHK-FFDDSTTYMMSVLKKLLQPFDDNGLPKDVEIILPDDDALVA 415
Query: 438 NLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
+ + + + ++ +ESK + +G +S D +D ++ R G
Sbjct: 416 QISG-RKYEMTENSKIRVESKKVMKARGVQSPDEADCILL-VCLPVKRPKKKKGAT 469
>gi|148653111|ref|YP_001280204.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
gi|148572195|gb|ABQ94254.1| hypothetical protein PsycPRwf_1309 [Psychrobacter sp. PRwf-1]
Length = 520
Score = 250 bits (637), Expect = 6e-64, Method: Composition-based stats.
Identities = 86/498 (17%), Positives = 176/498 (35%), Gaps = 65/498 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+WQ E + + + ++++G G GK+ + LW + P ++
Sbjct: 41 TWQQELLF----------KSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLF 90
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A QL+T +W E++ L L N + + + +
Sbjct: 91 TAPQIGQLRTVVWKEINICLQRLRNNKALGWLADYV-----VVLAEKIYIKGFKDTWFVF 145
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+T + +P G H + M DEA G D + +G LT N ++TS P +
Sbjct: 146 AKTAPKHQPTNIAGQHGDHYMVW-ADEACGIDDAVMEVAIGALTHENNRA--VLTSQPAK 202
Query: 233 LSGKFYEIFNKPLD----DWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQ 287
+G FY+ +K W + + + E + +S + + G+
Sbjct: 203 NTGFFYDTHHKLSHHNGGKWTALEFNGEMSPIVSKDKLIEALYQYGSRNSPGYLIRIRGK 262
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAPL--IMGCDI-AEEGGDNTVVVL-------- 336
FP+ + + E + + I+ D+ + G D++V+ +
Sbjct: 263 FPELKGEYLLTRTDYENMKQQPCVIEEGDKWGIIVAVDVGGDVGRDSSVISVMQVVDKMI 322
Query: 337 -----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
R +++ ++ ++ T KI+ ++ Y ++ID G L+ G
Sbjct: 323 KGRIERHVHLLDIPLFSNRANINTLKAKINDVMSDYPGATLVIDPLGAGMGLTQSLKADG 382
Query: 392 YHVYRVLGQKRAVD---LEFCRNRRTELHVKMADWLEFASLINHSGL---------IQNL 439
+ V + + N+R+ +V MA +E + ++
Sbjct: 383 VYFDEVHWGSPCFNNTLKRYYMNKRSHAYVSMAKAVEKGYFSVSDKVKKMYQVMTNLEEQ 442
Query: 440 KSLKSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRS------DMDFGRC 490
+ + + SK+ KG KS D +D + + F EN + D++ G
Sbjct: 443 MTRLPYYFDEKARWCMMSKKDMLKKGIKSPDIADTIAFGFMENISYAPVESYEDLNIGST 502
Query: 491 PSYQYEGV-----DLLIE 503
S + + + +LL E
Sbjct: 503 ESDELDLLKQAADELLGE 520
>gi|307308936|ref|ZP_07588619.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
BL225C]
gi|306900570|gb|EFN31183.1| hypothetical protein SinmeBDRAFT_4503 [Sinorhizobium meliloti
BL225C]
Length = 472
Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 103/433 (23%), Positives = 182/433 (42%), Gaps = 28/433 (6%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ G GKT ++A + W + + V A SE+ +K+ +W E+ S +
Sbjct: 50 ITVKGSSGWGKTFISAISLWWSLIVFDPVKVTIFAPSESTIKSGIWNELQVLYSNMA--- 106
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
L + + R S++ G H+ + +I DE
Sbjct: 107 -------PLFRELFEVSATKIFRKSRGETCWAEYRLVSKDNIAAARGFHSKNNI-VIADE 158
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL--DDWKRFQIDTRT 257
ASG DVI G L + ++ SNP + SG F++ + P DW + R
Sbjct: 159 ASGIEDVIFTGALLNVLNDGPGAKVVLVSNPDKASGFFFKTWRDPELSKDWIKVHGSIRD 218
Query: 258 VEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPY 315
P E Y G+ S V G+FP D+D I ++EA+ N++ P+P
Sbjct: 219 KPNYTPGEEERFARLYGGVTSRDYLTLVEGEFPLSDVDGLISREFLDEAVTNKDAIPNPK 278
Query: 316 APLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLV----EKYRPDA 371
AP+I G D A G D +V+ +R V+ +W+ + ++ L +K RP
Sbjct: 279 APIIWGLDPAGAGKDKSVLAIRHDNVLRGFEEWAGLEPVALALRVKELYLKTSKKDRPAV 338
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV-DLEFCRNRRTELHVKMADWLEFA--S 428
I +D N GA D L+ VY+ + + + + R ++ +M +W+ S
Sbjct: 339 IAVDGNGLGAGVYDALKHFKIPVYKCMFAEVPKRNPDRYTRVRDQIWFEMREWIHTGDVS 398
Query: 429 LINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDM 485
+ NH LI++L ++ ++ + ++ IE K + + +S DY+D L TF+ + R
Sbjct: 399 IPNHKKLIEDL-AIPTYED--SPKIKIEDKKSLKKRLGRSPDYADALALTFSVSHTRYAS 455
Query: 486 DFGRCPSYQYEGV 498
+ +Y+ +
Sbjct: 456 KYQWDKPIEYDNL 468
>gi|332974843|gb|EGK11758.1| hypothetical protein HMPREF9373_1714 [Psychrobacter sp. 1501(2011)]
Length = 520
Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats.
Identities = 82/498 (16%), Positives = 172/498 (34%), Gaps = 65/498 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+WQ E + + + ++++G G GK+ + LW + P ++
Sbjct: 41 TWQQELLF----------KSIVVPGSRTSVASGHGTGKSRSAGIIALWHLLFYPESVMLF 90
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A QL+T +W E++ L L N + + + +
Sbjct: 91 TAPQIGQLRTVVWKEINICLQRLRNNKALGWLADYV-----VVLAEKIYIKGFKDTWFVF 145
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+T + +P G H + M DEA G D + +G LT N ++TS P +
Sbjct: 146 AKTAPKHQPTNIAGQHGDHYMVW-ADEACGIDDAVMEVAIGALTHENNRA--VLTSQPAK 202
Query: 233 LSGKFYEIFNKPLD----DWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQ 287
+G FY+ +K W + + + E + +S + + G+
Sbjct: 203 NTGFFYDTHHKLSHYNGGKWIALEFNGEMSPIVSKEKLIEALYQYGSRNSPGYLIRIRGK 262
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVL-------- 336
FP+ + + E + + + G D++V+ +
Sbjct: 263 FPELKGEYLLTRTDYENMKAHPCVIKEGDKWGIIVTVDVGGDVGRDSSVISVLQVVDKMV 322
Query: 337 -----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
R +++ ++ ++ T KI+ ++ Y ++ID G ++ G
Sbjct: 323 KGRIERHVHLLDIPLFSNRANINTLKAKINDVMSDYPGATLVIDPLGAGMGLTQSVKADG 382
Query: 392 YHVYRVLGQKRAVD---LEFCRNRRTELHVKMADWLEFASLINHSGL---------IQNL 439
+ V + + N+R+ +V MA +E + ++
Sbjct: 383 VYFDEVHWGSPCFNNTLKRYYMNKRSHAYVSMAKAVEKGYFSVSDKIKKMYQVITNLEEQ 442
Query: 440 KSLKSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRS------DMDFGRC 490
+ + + SK+ KG KS D +D + + F EN + D++ G
Sbjct: 443 MTRLPYYFDEKARWCMMSKKDMLKKGIKSPDIADTIAFGFMENISYAPAESYEDLNIGST 502
Query: 491 PSYQYEGV-----DLLIE 503
S + + + +LL +
Sbjct: 503 ESDELDLLKQAADELLGD 520
>gi|292670767|ref|ZP_06604193.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292647388|gb|EFF65360.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 442
Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats.
Identities = 87/434 (20%), Positives = 158/434 (36%), Gaps = 32/434 (7%)
Query: 79 KGAISAGRG-IGKTTLNAWLVLWLMSTRPGI--SVICLANSETQLKTTLWAEVSKWLSLL 135
+ A+ GKT ++ +A Q K W + + + +
Sbjct: 26 RFAVLVCHRRFGKTVGTVNEMIRKAILNDKKAPVYAYVAPYRNQAKRVAWEYLKYYTNPI 85
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P + + + + ++H + D Y +
Sbjct: 86 PGR---------------VVNESELYIELPTRHARSPGARLYIIGADHPDALRGIYLDGV 130
Query: 196 INDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
I DE + P++ I L +R +I T + + Y+ K W
Sbjct: 131 ILDEYADIKPELWGGVIRPALADRQGWAVFIGTPKGQNQFYEMYQHAEKSAG-WYSCIYR 189
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
T + + + A+ R E+ F D IP++++ A NR D
Sbjct: 190 TDETGVLPAEELKDMQAQMTEME--IRQELLCDFTASASDVVIPIDLVTAAANRLLKDDD 247
Query: 315 --YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
P+I+G D+A G D TV+ +R+G ++ + ++ T +++ + ++ P A
Sbjct: 248 VLGQPVILGVDVARFGDDRTVLCVRQGLWLKEVRTFTGLSTMETASRVIDCINQHHPHAT 307
Query: 373 IIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS-LIN 431
IDA GA D L L Y V V + A+D N R E++ K WLE +
Sbjct: 308 FIDAGAMGAGVIDRLRQLRYQVSEVNFGEMAMDAARYANIRAEMYFKCRAWLEAGGAIPQ 367
Query: 432 HSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP---PRSDM 485
++ L L +++ + TG + +E K + + KS D +DG + TFA P +
Sbjct: 368 NAELKTELSTVE-YKFNPTGRIILEPKDKLKERTGKSPDLADGFVLTFARPVYINPSAGG 426
Query: 486 DFGRCPSYQYEGVD 499
S +Y+
Sbjct: 427 IGDDASSAEYDPFA 440
>gi|269119479|ref|YP_003307656.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
gi|268613357|gb|ACZ07725.1| hypothetical protein Sterm_0853 [Sebaldella termitidis ATCC 33386]
Length = 499
Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats.
Identities = 94/460 (20%), Positives = 162/460 (35%), Gaps = 69/460 (15%)
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
E + ++ AG GK++L L + + TRP VI A + QLKT WAEV+K +
Sbjct: 44 EYRRLSVPAGHSTGKSSLAGGLTTYWLITRPKSRVIVTAPTYRQLKTIYWAEVNKIYNRS 103
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG--- 192
K L+ ++ + + + + T S P+ G H
Sbjct: 104 KLK--------QLNLFEINDKIMRINDKDLKREWFALPVTAS--TPEGMQGQHGDKTEVI 153
Query: 193 -----------------------------------------MAIINDEASGTPDVINLGI 211
+ ++ DE+SG + I +
Sbjct: 154 EQIMKHLGIEEIGDDETIEIVSQILRGEKQIEGLTKEDKEKLLVMVDESSGVKNEIFEVL 213
Query: 212 LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA 271
G ++ N + +G FYE P + + + + + +
Sbjct: 214 EGT-----DYDKLVLFGNMTKNTGYFYESVYNPKSKFYKVTMSSYNSPFMKKEQIHDLEE 268
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAE-EGGD 330
YG DS+V RV + G+ P + +S N I+ A R Y + +G D+ + GGD
Sbjct: 269 TYGPDSNVVRVRLKGEAPDGNENSIFSSNKIDSAFQRSLSLSEYETIKLGVDVGKGSGGD 328
Query: 331 NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII--IDANNTGARTCDYLE 388
++ + ++ + D L +I K R II ID G LE
Sbjct: 329 SSTIYEKKDNRVRKKLDRKDFTLPDVKREIIQYCYKNRDKLIIANIDGTGLGTGLVQELE 388
Query: 389 M---LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSF 445
V + +A + + N+RTE++ +++ L+ L L + L ++ +
Sbjct: 389 EGEIENLVVNDIQFAGKAKNKKEFNNKRTEMYFELSRNLDKLDLEEDQELKRELL-IQIY 447
Query: 446 IVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPR 482
N G + SK + S D SD L E R
Sbjct: 448 EFDNNGRFKLISKDKIKEMLGHSPDKSDALALCNYEAETR 487
>gi|161789175|ref|YP_001595730.1| PacB [Vibrio sp. 0908]
gi|161761461|gb|ABX77106.1| PacB [Vibrio sp. 0908]
Length = 572
Score = 237 bits (603), Expect = 5e-60, Method: Composition-based stats.
Identities = 86/459 (18%), Positives = 162/459 (35%), Gaps = 41/459 (8%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK-WL 132
P + ++++G G GK+ L A L L + T P + ANS Q+ +++ + + W+
Sbjct: 57 TPVGARVSVASGHGTGKSHLTAALCLHFIITHPESLCMLTANSLDQVTNVVFSYIKRCWV 116
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ + W E + + +T S+ + G H
Sbjct: 117 KICQRQPWLE--------QYFVITAKSFYAKGYKGVWQIFGKTCSKGNEEGLAGQHRRDY 168
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN--KPLDDWKR 250
M ++ DEASG D + G LTE N ++ S R +G F + +
Sbjct: 169 M-VVVDEASGVSDRAFEVLRGALTEDNNK--MLLISQFTRPTGHFADSQMELAEQGLYTA 225
Query: 251 FQIDTRTVEGIDPSFH-EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+++ ++ F E I G+ S + V G P I +++++
Sbjct: 226 ITLNSEMSPFVNLKFIREKRIEYGGVTSPEYGIRVLGVCPDDASGFLISRSLVDKGFEAV 285
Query: 310 PCPDPYAPLIMGCDIAEEGG-DNTVVVL---------RRGPVIEHLFDWSKTDLRTTNNK 359
+ D+A G D++V+ + R+ V++ + + D
Sbjct: 286 IEFADEWGWVAVADVAGGEGRDSSVLKIGKVCGFGSERQVEVVKAIEAPADMDGVQFARF 345
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA---VDLEFCRNRRTEL 416
I Y ++ IDA+ G T E LG +V R+ + + +
Sbjct: 346 IHQETAGYTNISVGIDADGYGLTTAQECEKLGVNVTRIHWGRPPHANSVKQRFPKEKDFA 405
Query: 417 HVKMADWLEFASLINHS--------GLIQNLKSLKSFIVPNTGELAIESKR---VKGAKS 465
V + + L L H L + + + G I SK+ +G KS
Sbjct: 406 CVMVKEALGTGRLKLHRGETKQFEKKLQKQFVKIP-YEFDELGRWRIFSKKQLRSEGIKS 464
Query: 466 TDYSDGLMYTFA-ENPPRSDMDFGRCPSYQYEGVDLLIE 503
D D + + + P + G+ + + + LL E
Sbjct: 465 PDIFDATAFFWLVDYIPAGEQSDGQSDNALAKAMALLGE 503
>gi|48697461|ref|YP_024846.1| Pas60 [Actinoplanes phage phiAsp2]
gi|47679679|gb|AAT36808.1| Pas60 [Actinoplanes phage phiAsp2]
Length = 492
Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats.
Identities = 107/475 (22%), Positives = 174/475 (36%), Gaps = 56/475 (11%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-- 106
+P +W + ++V A + + P + A+ G+GK+ A LV W +TR
Sbjct: 21 DSPTAWAADCLDVRLAGYQGEILDAVPRERRVAVRGPHGLGKSFSGAILVNWFATTRDLM 80
Query: 107 --GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
+I A++ L+ LW E+ KW + ++L AP+ L +
Sbjct: 81 GKDWKIITTASAWRHLEVYLWPEIHKWA--------GRINFVALGRAPYNPRTELLDLRL 132
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN----A 220
H + + +P+ G H + + DEA P I G +
Sbjct: 133 KLTHGAATAVASN--QPERIEGAHAEE-LLYLLDEAKIVPPATWDSIEGAFSNAGVDVAD 189
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPL--DDWKRFQIDTRT---VEGIDPSFHEGIIARYGL 275
N + S P SG+FY+I + +DW + I ++ + +++G
Sbjct: 190 NAYAFAMSTPGAPSGRFYDIHRRAPGYEDWWTRHVTLEEAIASGRISRAWADQRRSQWGS 249
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD------PYAPLIMGCDIAEEGG 329
DS V V G+F D DS IPL +E A+ R D P PL G D+ GG
Sbjct: 250 DSAVFHNRVLGEFHASDEDSVIPLAWLEAAIERWHEWDRQGRPSPGGPLWTGVDVGR-GG 308
Query: 330 DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
D TV+ R G + L + D T I R IID GA D L
Sbjct: 309 DETVLAARDGWAVT-LETNRRRDTMATVGLIQA-----REGRAIIDVIGLGAGVFDRLRE 362
Query: 390 LGYHVYRVLGQKRAVDLEF-----CRNRRTELHVKMADWLEFA-----SLINHSGLIQNL 439
LG G A + N R+ + + + L+ A +L +I +L
Sbjct: 363 LGTRPLAYTGSAGATVRDRSGKFGFTNTRSAAYWNLRELLDPAFDPVLALPPDDLMISDL 422
Query: 440 KSLKSFIVPNT-GELAIESKRV---KGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
+ + ++ +E K + +S D D + + +D G
Sbjct: 423 TTPHWEVTTGVPPKIKVEPKDKVVERLGRSPDRGDAIAMSL-----WADRHRGSS 472
>gi|323179619|gb|EFZ65182.1| terminase B protein [Escherichia coli 1180]
Length = 453
Score = 232 bits (590), Expect = 2e-58, Method: Composition-based stats.
Identities = 93/443 (20%), Positives = 164/443 (37%), Gaps = 36/443 (8%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++ +
Sbjct: 2 QETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWA 61
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+H + L +Y + +C+ Y + G H + +
Sbjct: 62 NAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAH-L 113
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-------KPLD 246
+I DEASG D + G LTE + +M S P R SG FY+ + P
Sbjct: 114 LLILDEASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNPKG 171
Query: 247 DWKRFQIDTRTVEGIDPSFH-EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
W +++ + P F + ++ G DS V+V GQFP++ + + + A
Sbjct: 172 IWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRA 231
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNT-----VVVLRRGPVIEHLFDWSKTDLRT---TN 357
R+ + + D+ + V R + +
Sbjct: 232 ARRKVLLEKNWGWVATADVGNGRDKSVLNICKVSGHRDKRRVVNFKVMEMPGTMDPLAFA 291
Query: 358 NKISGLV--EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK---RAVDLEFCRNR 412
+ I EKY I +DA+ G+ TC L G + R+ K D E N+
Sbjct: 292 DFIYNECTPEKYPNITIAVDADGFGSDTCAQLVRRGANPVRIRWGKPMFANKDRERFVNQ 351
Query: 413 RTELHVKMADWLEFASLINH-SGLIQNLKSLKSFIVPNTGELAIESK----RVKGAKSTD 467
R ++ D ++ + S F++ G++A+ K + KS D
Sbjct: 352 RAYANIMARDAIKSGRMRIDSDPKTAEQASKIPFLLNEEGKMAMMRKEHMRQKLNIKSPD 411
Query: 468 YSDGLMYTFAENPPRSDMDFGRC 490
D +T + ++ D G
Sbjct: 412 RWDTYCFTMLVDYVPANEDIGAE 434
>gi|56266666|gb|AAV84947.1| DNA pacase B subunit [Enterobacteria phage D6]
Length = 502
Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 93/443 (20%), Positives = 165/443 (37%), Gaps = 36/443 (8%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++ +
Sbjct: 51 QETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWA 110
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+H + L +Y + +C+ Y + G H + +
Sbjct: 111 NAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAH-L 162
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-------KPLD 246
+I DEASG D + G LTE + +M S P R SG FY+ + P
Sbjct: 163 LLILDEASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNPKG 220
Query: 247 DWKRFQIDTRTVEGIDPSFH-EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
W +++ + P F + ++ G DS V+V GQFP++ + + + A
Sbjct: 221 IWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRA 280
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNT-----VVVLRRGPVIEHLFDWSKTDLRT---TN 357
R+ + + D+ + V R + + +
Sbjct: 281 ARRKVLLEKNWGWVATADVGNGRDKSVLNICKVSGHRDKRRVVNFKVMEMSGTMDPLAFA 340
Query: 358 NKISGLV--EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK---RAVDLEFCRNR 412
+ I EKY I +DA+ G+ TC L G + R+ K D E N+
Sbjct: 341 DFIYNECTPEKYPNITIAVDADGFGSDTCAQLVRRGANPVRIRWGKPMFANKDRERFVNQ 400
Query: 413 RTELHVKMADWLEFASLINH-SGLIQNLKSLKSFIVPNTGELAIESK----RVKGAKSTD 467
R ++ D ++ + S F++ G++A+ K + KS D
Sbjct: 401 RAYANIMARDAIKSGRMRIDSDPKTAEQASKIPFLLNEEGKMAMMRKEHMRQKLNIKSPD 460
Query: 468 YSDGLMYTFAENPPRSDMDFGRC 490
D +T + ++ D G
Sbjct: 461 RWDTYCFTMLVDYVPANEDIGAE 483
>gi|56266643|gb|AAV84926.1| DNA pacase B subunit [Enterobacteria phage phiW39]
Length = 494
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 93/503 (18%), Positives = 184/503 (36%), Gaps = 55/503 (10%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L G + +WQ + + + + + K ++S+G G GK+
Sbjct: 16 ALYRYDWIAAADVLFGKTP--TWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA 151
+ + +++ + PG I +AN Q+ T ++ + +W S A
Sbjct: 64 DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKI--------NWATATSRFPWLA 115
Query: 152 PWYSDVLHCSLGI-DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
++ I ++ + + + + G H + + I DEASG D
Sbjct: 116 DYFVLTETAFYEITGKGVWTVVPKGFRLGSEEALAGEHADH-LLYIIDEASGVSDRAFGI 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD-------WKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ +K + +++ + P
Sbjct: 175 ITGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTP 232
Query: 264 SFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
+F + + G D+ + ++V G FP+ + + +E A R+ +
Sbjct: 233 AFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACV 292
Query: 323 DIA-EEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTT--NNKISGLV--EKYRPDA 371
D+A G D +V+ + R + + TD+ T KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYLEM-LGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + G V R+ K+ D ++R +V+ A+ ++
Sbjct: 353 IAIDGDGLGKATADLMYEYYGITVQRIRWGKKMHSREDKSLYFDKRAYANVQAAEAVKSG 412
Query: 428 SLINH--SGLIQNLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPP 481
+ + I+ + + + G+ + S K+ S D+ D + +
Sbjct: 413 RMRLDKGNETIEEASKIP-VGINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLADYV 471
Query: 482 RSDMDFGRCPSYQY-EGVDLLIE 503
D Q E + L E
Sbjct: 472 PQDEVLSVEDEAQVDEALAWLNE 494
>gi|312964323|ref|ZP_07778627.1| terminase B protein [Escherichia coli 2362-75]
gi|331655801|ref|ZP_08356790.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M718]
gi|312291036|gb|EFR18910.1| terminase B protein [Escherichia coli 2362-75]
gi|323186470|gb|EFZ71817.1| terminase B protein [Escherichia coli 1357]
gi|323969205|gb|EGB64507.1| terminase B protein [Escherichia coli TA007]
gi|325495624|gb|EGC93488.1| DNA pacase B subunit [Escherichia fergusonii ECD227]
gi|331046575|gb|EGI18664.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M718]
Length = 494
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 92/503 (18%), Positives = 183/503 (36%), Gaps = 55/503 (10%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L G + +WQ + + + + + K ++S+G G GK+
Sbjct: 16 ALYRYDWIAAADVLFGKTP--TWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA 151
+ + +++ + PG I +AN Q+ T ++ + +W S A
Sbjct: 64 DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKI--------NWATATSRFPWLA 115
Query: 152 PWYSDVLHCSLG-IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
++ ++ + + + + G H + + I DEASG D
Sbjct: 116 DYFVLTETAFYEVTGKGVWTVVPKGFRLGSEEALAGEHADH-LLYIIDEASGVSDRAFGI 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD-------WKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ +K + +++ + P
Sbjct: 175 ITGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTP 232
Query: 264 SFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
+F + + G D+ + ++V G FP+ + + +E A R+ +
Sbjct: 233 AFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACV 292
Query: 323 DIA-EEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTT--NNKISGLV--EKYRPDA 371
D+A G D +V+ + R + + TD+ T KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYLEM-LGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + G V R+ K+ D ++R +V+ A+ ++
Sbjct: 353 IAIDGDGLGKATADLMYEYYGITVQRIRWGKKMHSREDKSLYFDKRAYANVQAAEAVKSG 412
Query: 428 SLINH--SGLIQNLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPP 481
+ + I+ + + + G+ + S K+ S D+ D + +
Sbjct: 413 RMRLDKGNETIEEASKIP-VGINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLADYV 471
Query: 482 RSDMDFGRCPSYQY-EGVDLLIE 503
D Q E + L E
Sbjct: 472 PQDEVLSVEDEAQVDEALAWLNE 494
>gi|324111095|gb|EGC05081.1| terminase B protein [Escherichia fergusonii B253]
Length = 494
Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats.
Identities = 92/503 (18%), Positives = 183/503 (36%), Gaps = 55/503 (10%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L G + +WQ + + + + + K ++S+G G GK+
Sbjct: 16 ALYRYDWIAAADVLFGKTP--TWQQDLI----------IESVQEQGSKTSVSSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA 151
+ + +++ + PG I +AN Q+ T ++ + +W S A
Sbjct: 64 DMTSIMIMLFIIMYPGARAIIVANKIQQVMTGIFKYIKI--------NWATATSRFPWLA 115
Query: 152 PWYSDVLHCSLG-IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
++ ++ + + + + G H + + I DEASG D
Sbjct: 116 DYFVLTETAFYEVTGKGVWTVVPKGFRLGSEEALAGEHADH-LLYIIDEASGVSDRAFGI 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD-------WKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ +K + +++ + P
Sbjct: 175 ITGALTGQDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPDGVYTAITLNSEESPLVTP 232
Query: 264 SFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
+F + + G D+ + ++V G FP+ + + +E A R+ +
Sbjct: 233 AFIKMKLAEYGGRDNPMYMIKVRGLFPKSQDGFLLGRDEVERATRRKVKIAKGWGWLACV 292
Query: 323 DIA-EEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTT--NNKISGLV--EKYRPDA 371
D+A G D +V+ + R + + TD+ T KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRILEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYLEM-LGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + G V R+ K+ D ++R +V+ A+ ++
Sbjct: 353 IAIDGDGLGKATADLMYEYYGITVQRIRWGKKMHSREDKSLYFDKRAYANVQAAEAVKSG 412
Query: 428 SLINH--SGLIQNLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPP 481
+ + I+ + + + G+ + S K+ S D+ D + +
Sbjct: 413 RMRLDKGNETIEEASKIP-VGINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLADYV 471
Query: 482 RSDMDFGRCPSYQY-EGVDLLIE 503
D Q E + L E
Sbjct: 472 PQDEVLSVEDEAQVDEALAWLNE 494
>gi|323948959|gb|EGB44853.1| terminase B protein [Escherichia coli H252]
Length = 502
Score = 230 bits (585), Expect = 5e-58, Method: Composition-based stats.
Identities = 93/443 (20%), Positives = 164/443 (37%), Gaps = 36/443 (8%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++ +
Sbjct: 51 QETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWA 110
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+H + L +Y + +C+ Y + G H + +
Sbjct: 111 NAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAH-L 162
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-------KPLD 246
+I DEASG D + G LTE + +M S P R SG FY+ + P
Sbjct: 163 LLILDEASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSRAKTPDNPKG 220
Query: 247 DWKRFQIDTRTVEGIDPSFH-EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
W +++ + P F E ++ G DS V+V GQFP++ + + + +
Sbjct: 221 IWTAIVLNSEESPFVTPQFIKEKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRS 280
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNT-----VVVLRRGPVIEHLFDWSKTDLRT---TN 357
R+ + + D+ + V R + +
Sbjct: 281 ARRKVLLEKNWGWVATADVGNGRDKSVLNICKVSGHRDKRRVVNFKVMEMPGTMDPLAFA 340
Query: 358 NKISGLV--EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK---RAVDLEFCRNR 412
+ I EKY I +DA+ G+ TC L G + R+ K D E N+
Sbjct: 341 DFIYNECTPEKYPNITIAVDADGFGSDTCAQLVRRGANPVRIRWGKPMFANKDRERFVNQ 400
Query: 413 RTELHVKMADWLEFASLINH-SGLIQNLKSLKSFIVPNTGELAIESK----RVKGAKSTD 467
R ++ D ++ + S F++ G++A+ K + KS D
Sbjct: 401 RAYANIMARDAIKSGRMRIDSDPKTAEQASKIPFLLNEEGKMAMMRKEHMRQKLNIKSPD 460
Query: 468 YSDGLMYTFAENPPRSDMDFGRC 490
D +T + ++ D G
Sbjct: 461 RWDTYCFTMLVDYVPANEDIGAE 483
>gi|304399103|ref|ZP_07380971.1| DNA packaging protein [Pantoea sp. aB]
gi|304353343|gb|EFM17722.1| DNA packaging protein [Pantoea sp. aB]
Length = 503
Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats.
Identities = 101/525 (19%), Positives = 184/525 (35%), Gaps = 63/525 (12%)
Query: 13 QKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQ-LEFMEVVDAHCLNSVN 71
+K + +D + + + W L G +WQ E M V
Sbjct: 4 KKRIKSVTTDPRWRDMV--IRYRYNWALAVVELFGMIP--TWQQEEIMNSVQE------- 52
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
+ +++G G GK++L A ++L M P VI +AN Q+KT ++ V +
Sbjct: 53 ----TGSQTTVTSGHGTGKSSLTAMMLLIYMIMYPDARVIIVANKIGQVKTGVFKYVKTY 108
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ +H + + +C+ Y + G H +
Sbjct: 109 WANAARRH-------PWLQNYFTLTDTMFYEKSRKGIWEVLCKGYRLGNEEALAGEHAAH 161
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-------KP 244
+ +I DEASG D + G LTE + +M S P R SG FY+ + P
Sbjct: 162 -ILLILDEASGISDKAIAIMRGALTEEDNR--MLMMSQPTRPSGYFYDSHHSLARHPDNP 218
Query: 245 LDDWKRFQIDTRTVEGIDPSFH-EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
W +++ + F E ++ G DS V+V G+FP+ + + +
Sbjct: 219 NGFWNAIVLNSEEAPHVTLKFIREKLVEYGGRDSLEYMVKVLGRFPRNVSGYLLGRDECD 278
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL---------RRGPVIEHLFDWSKTDLR 354
A R+ + + D+ D +++ + RR + L D
Sbjct: 279 RAARRKVYLEKGWGWVATADVGNGR-DKSILNICKVSGYGDARRVVSFKLLEMPGTMDPI 337
Query: 355 TTNNKISGLV--EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL---EFC 409
+ + I+ E+Y I +D + G+ T LE G + + + E
Sbjct: 338 SFGDYIANECTQERYPGITIAVDGDGVGSGTLKQLERRGVNAISIRWGQPPFSKKVRERF 397
Query: 410 RNRRTELHVKMADWLEFASLINH--SGLIQNLKSLKSFIVPNTGELAIESK----RVKGA 463
+N+R ++ AD + + + + + + G + + K +
Sbjct: 398 KNQRAWSNIMAADAIRSGRMRIDMSQHTAEQASKIP-YFMDEMGRIMMVPKPQMRQKLNI 456
Query: 464 KSTDYSDGLMYTF------AENPPRSDM-DFGRCPSYQYEGVDLL 501
KS D D + F AE DM DF + + +D L
Sbjct: 457 KSPDRWDTYCFIFLIGYRPAEAELSEDMADFTQSKLDELSELDAL 501
>gi|256392042|ref|YP_003113606.1| hypothetical protein Caci_2856 [Catenulispora acidiphila DSM 44928]
gi|256358268|gb|ACU71765.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928]
Length = 484
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 82/469 (17%), Positives = 151/469 (32%), Gaps = 55/469 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS- 109
P W + + + + A+ + G GK+ + + L W + T P
Sbjct: 28 PARWVDDKLGEYLWSRQVDIATSVRDQRLTAVQSCHGTGKSFVASRLTAWWLDTHPPGEA 87
Query: 110 -VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V+ A + Q+K LWAE++K + + ++ W D K
Sbjct: 88 FVVTTAPTGDQVKAILWAEINKAFAKAEAR--GTPLPGRINETDWKYD----------KF 135
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
R S+ P F G H Y + +I DEA G L T + +
Sbjct: 136 LVAFGRKPSDYNPHAFQGIHAKY-VLVILDEACGISKQFWTAALAIAT--GVHCRILAIG 192
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE--------------GIIARYG 274
NP F ++ D W +I R + +G
Sbjct: 193 NPDDPGSHFAQVC--KSDRWNMIKIAARDTPNFTGEEVPDDLADMLVSQAYVLDMAEEFG 250
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---REPCPDPYAPLIMGCDIAEEGGDN 331
+S + +V +FP D + L+ + PD P+ +G D+ GGD
Sbjct: 251 PESPIYLSKVDAEFPSDASDGVVRLSKLMACTREPVHPYAPDRLVPVELGVDLG-AGGDE 309
Query: 332 TVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
T + RRG + + D + I + + + +D+ G L+
Sbjct: 310 TCIRERRGIAAGREWRNREKDSEKVVDHIVRAIRETGATKVKVDSIGIGWGIVGSLQARR 369
Query: 392 Y------HVYRVLGQKRAVDLEFCRNRRTELHVKM-ADWLEFASLI-------NHSGLIQ 437
V V + + E R+++ ++ E + L+
Sbjct: 370 KQGLHTAEVVGVNVSEASTQPEKYARLRSQIWWEVGRKLSEDGGWDLSQLDTTDRDRLVS 429
Query: 438 NLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRS 483
L + + + +G + +E K + + +S D +D L+ F
Sbjct: 430 QLTA-PKYDLDASGRIVVEKKEETKKRIGRSPDNADALLLAFYTPSVPK 477
>gi|302120432|gb|ADK92426.1| putative phage terminase large subunit [Candidatus Liberibacter
asiaticus]
Length = 255
Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats.
Identities = 250/255 (98%), Positives = 254/255 (99%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
IGKTTLNAWLVLWLMS RPG+S+ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS
Sbjct: 1 IGKTTLNAWLVLWLMSIRPGMSIICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 60
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI
Sbjct: 61 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 120
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE 267
NLGILGFLTE+NANRFWIMTSNPRRLSGKFYEIFN+PLDDWKRFQIDTRTVEGIDPSFHE
Sbjct: 121 NLGILGFLTEQNANRFWIMTSNPRRLSGKFYEIFNRPLDDWKRFQIDTRTVEGIDPSFHE 180
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE
Sbjct: 181 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 240
Query: 328 GGDNTVVVLRRGPVI 342
GGDNTVVVLRRGPVI
Sbjct: 241 GGDNTVVVLRRGPVI 255
>gi|168467778|ref|ZP_02701615.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|195629119|gb|EDX48493.1| DNA pacase B subunit [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
Length = 494
Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats.
Identities = 93/504 (18%), Positives = 186/504 (36%), Gaps = 57/504 (11%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQL-EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGK 90
+ + W + G + +WQ + +E V K ++S+G G GK
Sbjct: 16 AQYRYDWIAAADVMFGKTP--TWQQDQIIESVQE-----------PGSKTSVSSGHGTGK 62
Query: 91 TTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHP 150
+ + + +++ + PG I +AN Q+ T ++ + +W S
Sbjct: 63 SDMTSIMIMLFIIMFPGARAIIVANKIQQVMTGIFKYLKI--------NWSTATSRFPWL 114
Query: 151 APWYSDVLHCSLGID-SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209
A ++ I ++ + + + + G H + + I DEASG D
Sbjct: 115 AEYFVLTDTSFYEITSKGVWTVVPKGFRLGNEEALAGEHADH-LLYIIDEASGVSDKAFG 173
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD-------WKRFQIDTRTVEGID 262
+ G LT ++ + S P R SG FY+ +K + +++ +
Sbjct: 174 IMTGALTGKDNRILLL--SQPTRPSGYFYDTHHKLAKRPGNPNGIYTAITLNSEESPLVT 231
Query: 263 PSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
P F + + G DS + ++V G FP+ + + +E A R+ I
Sbjct: 232 PEFIKMKLAEYGGRDSPMYLIKVRGLFPKTQDGFLLGRDEVERASRRKVKIAKGWGWIAC 291
Query: 322 CDIA-EEGGDNTVVVL------RRGPVIE--HLFDWSKTDLRTTNNKISGLV--EKYRPD 370
D+A G D +V+ + R I + ++S KI+ ++Y
Sbjct: 292 VDVAGGTGRDKSVINIMMVSGERNKRRIIGYRIIEYSDVTETQLAAKINAECSPDRYPNI 351
Query: 371 AIIIDANNTGARTCDYL-EMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEF 426
I+ID + G T D L + G R+ K+ D ++R +V+ A+ ++
Sbjct: 352 TIVIDGDGLGKSTADLLYDNYGITAQRIRWGKKMHSREDRSLYFDQRAYANVQAAEAVKS 411
Query: 427 ASLINH--SGLIQNLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTF-AEN 479
+ I+ + + + G+ + S K+ +S D+ D + A
Sbjct: 412 GRMRLDKGDATIEEASKIP-VGINSAGQWKVMSKEDMKKKLNLRSPDHWDTYCFGMLANY 470
Query: 480 PPRSDMDFGRCPSYQYEGVDLLIE 503
P++++ + E + L E
Sbjct: 471 VPQNEVLSFEDEAQVDEALAWLNE 494
>gi|331649955|ref|ZP_08351031.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M605]
gi|331041212|gb|EGI13366.1| terminase B protein (PACase B protein) (DNA packaging B protein)
[Escherichia coli M605]
Length = 494
Score = 222 bits (566), Expect = 9e-56, Method: Composition-based stats.
Identities = 89/503 (17%), Positives = 179/503 (35%), Gaps = 55/503 (10%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L G + +WQ + + + + ++++G G GK+
Sbjct: 16 ALYRYDWIAAADVLFGKTP--TWQQD----------EIIESTQQDGSWTSVTSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA 151
+ + + + + PG VI +AN Q+ ++ + +W S +
Sbjct: 64 DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIK--------SNWATAVSRFPWLS 115
Query: 152 PWYSDVLHCSLG-IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
++ ++ + ++ + G H + + I DEASG D
Sbjct: 116 KYFILTETSFFEVTGKGVWTILIKSCRPGNEEALAGEHADH-LLYIIDEASGVSDKAFSV 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ ++ P + +++ +D
Sbjct: 175 ITGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDA 232
Query: 264 SFH-EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
F + G D+ + ++V G+FP+ + + +E A R+ +
Sbjct: 233 KFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACV 292
Query: 323 DIA-EEGGDNTVVVL------RRGPVIEHLFDWSKTDLRT--TNNKISGLV--EKYRPDA 371
D+A G D +V+ + R + + TD+ KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRMQEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYL-EMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + E G V R+ K+ D + R +++ A+ ++
Sbjct: 353 IAIDGDGLGKSTADLMYERYGITVQRIRWGKKMHSREDKSLYFDMRAFANIQAAEAVKSG 412
Query: 428 SLINH--SGLIQNLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPP 481
+ + I+ + + + G+ + S K+ S D+ D + N
Sbjct: 413 RMRLDKGAATIEEASKIP-VGINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLANYV 471
Query: 482 RSDMDFGRCPSYQY-EGVDLLIE 503
D Q E + L E
Sbjct: 472 PQDEVLSVEDEAQVDEALAWLNE 494
>gi|46401730|ref|YP_006576.1| PacB [Enterobacteria phage P1]
gi|301646767|ref|ZP_07246623.1| putative terminase B protein [Escherichia coli MS 146-1]
gi|129547|sp|P27753|TERL_BPP1 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein B; AltName: Full=PACase B protein; AltName:
Full=Terminase B protein; AltName: Full=Terminase large
subunit
gi|68597607|sp|Q5XLR0|TERL_BPP7 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein B; AltName: Full=PACase B protein; AltName:
Full=Terminase B protein; AltName: Full=Terminase large
subunit
gi|33323612|gb|AAQ07582.1|AF503408_106 PacB [Enterobacteria phage P7]
gi|215636|gb|AAA21724.1| pacB [Enterobacteria phage P1]
gi|33338757|gb|AAQ14080.1| PacB [Enterobacteria phage P1]
gi|33338866|gb|AAQ14188.1| PacB [Enterobacteria phage P1]
gi|54112354|gb|AAV28854.1| PacB [Enterobacteria phage P7]
gi|301075042|gb|EFK89848.1| putative terminase B protein [Escherichia coli MS 146-1]
Length = 494
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 89/503 (17%), Positives = 179/503 (35%), Gaps = 55/503 (10%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L G + +WQ + + + + ++++G G GK+
Sbjct: 16 ALYRYDWIAAADVLFGKTP--TWQQD----------EIIESTQQDGSWTSVTSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA 151
+ + + + + PG VI +AN Q+ ++ + +W S +
Sbjct: 64 DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIK--------SNWATAVSRFPWLS 115
Query: 152 PWYSDVLHCSLG-IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
++ ++ + ++ + G H + + I DEASG D
Sbjct: 116 KYFILTETSFFEVTGKGVWTILIKSCRPGNEEALAGEHADH-LLYIIDEASGVSDKAFSV 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ ++ P + +++ +D
Sbjct: 175 ITGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDA 232
Query: 264 SFH-EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
F + G D+ + ++V G+FP+ + + +E A R+ +
Sbjct: 233 KFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACV 292
Query: 323 DIA-EEGGDNTVVVL------RRGPVIEHLFDWSKTDLRT--TNNKISGLV--EKYRPDA 371
D+A G D +V+ + R + + TD+ KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYL-EMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + E G V R+ K+ D + R +++ A+ ++
Sbjct: 353 IAIDGDGLGKSTADLMYERYGITVQRIRWGKKMHSREDKSLYFDMRAFANIQAAEAVKSG 412
Query: 428 SLINH--SGLIQNLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPP 481
+ + I+ + + + G+ + S K+ S D+ D + N
Sbjct: 413 RMRLDKGAATIEEASKIP-VGINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLANYV 471
Query: 482 RSDMDFGRCPSYQY-EGVDLLIE 503
D Q E + L E
Sbjct: 472 PQDEVLSVEDEAQVDEALAWLNE 494
>gi|260871239|ref|YP_003238019.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
gi|257767818|dbj|BAI39311.1| DNA packaging protein [Escherichia coli O111:H- str. 11128]
Length = 494
Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats.
Identities = 89/503 (17%), Positives = 179/503 (35%), Gaps = 55/503 (10%)
Query: 32 VLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
L+ + W L G + +WQ + + + + ++++G G GK+
Sbjct: 16 ALYRYDWIAAADVLFGKTP--TWQQD----------EIIESTQQDGSWTSVTSGHGTGKS 63
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA 151
+ + + + + PG VI +AN Q+ ++ + +W S +
Sbjct: 64 DMTSIIAILFIMFFPGARVILVANKRQQVLDGIFKYIK--------SNWATAVSRFPWLS 115
Query: 152 PWYSDVLHCSLG-IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
++ ++ + ++ + G H + + I DEASG D
Sbjct: 116 KYFILTETSFFEVTGKGVWTILIKSCRSGNEEALAGEHADH-LLYIIDEASGVSDKAFSV 174
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDP 263
I G LT ++ + S P R SG FY+ ++ P + +++ +D
Sbjct: 175 ITGALTGKDNRILLL--SQPTRPSGYFYDSHHRLAIRPGNPDGLFTAIILNSEESPLVDA 232
Query: 264 SFH-EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
F + G D+ + ++V G+FP+ + + +E A R+ +
Sbjct: 233 KFIRAKLAEYGGRDNPMYMIKVRGEFPKSQDGFLLGRDEVERATRRKVKIAKGWGWVACV 292
Query: 323 DIA-EEGGDNTVVVL------RRGPVIEHLFDWSKTDLRT--TNNKISGLV--EKYRPDA 371
D+A G D +V+ + R + + TD+ KI E++
Sbjct: 293 DVAGGTGRDKSVINIMMVSGQRNKRRVINYRMLEYTDVTETQLAAKIFAECNPERFPNIT 352
Query: 372 IIIDANNTGARTCDYL-EMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWLEFA 427
I ID + G T D + E G V R+ K+ D + R +++ A+ ++
Sbjct: 353 IAIDGDGLGKSTADLMYERYGITVQRIRWGKKMHSREDKSLYFDMRAFANIQAAEAVKSG 412
Query: 428 SLINH--SGLIQNLKSLKSFIVPNTGELAIES----KRVKGAKSTDYSDGLMYTFAENPP 481
+ + I+ + + + G+ + S K+ S D+ D + N
Sbjct: 413 RMRLDKGAATIEEASKIP-VGINSAGQWKVMSKEDMKKKLNLHSPDHWDTYCFAMLANYV 471
Query: 482 RSDMDFGRCPSYQY-EGVDLLIE 503
D Q E + L E
Sbjct: 472 PQDEVLSVEDEAQVDEALAWLNE 494
>gi|323516996|gb|ADX91377.1| hypothetical protein ABTW07_0941 [Acinetobacter baumannii
TCDC-AB0715]
gi|323518424|gb|ADX92805.1| hypothetical protein ABTW07_2381 [Acinetobacter baumannii
TCDC-AB0715]
Length = 663
Score = 221 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 86/430 (20%), Positives = 152/430 (35%), Gaps = 41/430 (9%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ + + + +T + +P G+H M + DEASG D
Sbjct: 268 YVGY------QSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGVDD 320
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTRTVEGI 261
+ G LT + +MTS P R +G FYE +K W + +
Sbjct: 321 AVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPLV 378
Query: 262 DPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-PLI 319
E +YG + ++ V G+FP + I EE D + +
Sbjct: 379 SKQSLEEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGYV 438
Query: 320 MGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ D+ G D++V+V+ RR V++ ++ D+ KI+ L+
Sbjct: 439 ITVDVGGGVGRDDSVIVVSKVWGESQWGERARRVEVVDIPLCKNRDDILELFAKINELLL 498
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK---RAVDLEFCRNRRTELHVKMAD 422
+Y +++D N G YL+ G V + + N+R+ +V +A
Sbjct: 499 QYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAYVGLAR 558
Query: 423 WLEFASLINHS-----GLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ + + L + + + I SK + G KS D D +
Sbjct: 559 AIASGRFKIKTKKHNVKIKDQLIHVP-YRFDDFARYKILSKDEMKRMGIKSPDIGDAFAF 617
Query: 475 TFAENPPRSD 484
F EN ++
Sbjct: 618 LFLENVHYTE 627
>gi|299769795|ref|YP_003731821.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
gi|298699883|gb|ADI90448.1| hypothetical protein AOLE_07785 [Acinetobacter sp. DR1]
Length = 668
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 89/430 (20%), Positives = 151/430 (35%), Gaps = 41/430 (9%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ + + + +T + +P G+H M + DEASG D
Sbjct: 268 YVGY------QSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGVDD 320
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTRTVEGI 261
+ G LT + +MTS P R +G FYE +K W + +
Sbjct: 321 AVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPLV 378
Query: 262 DPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-PLI 319
E +YG D ++ V G+FP + I EE D + I
Sbjct: 379 SKQSLEEQRQKYGSRDDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGYI 438
Query: 320 MGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ D+ G D++V+V+ RR V++ ++ D+ KI+ L+
Sbjct: 439 ITVDVGGGVGRDDSVIVISKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKINELLL 498
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK---RAVDLEFCRNRRTELHVKMAD 422
+Y +++D N G YL+ G V + + N+R+ +V A
Sbjct: 499 QYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAYVGFAR 558
Query: 423 WLEFASLINHS-----GLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ + + L + + + I SK R G KS D D +
Sbjct: 559 AVASGRFKMKTKKHYVKIKDQLIHIP-YRFDDFARYKILSKDEMRRMGIKSPDLGDAFAF 617
Query: 475 TFAENPPRSD 484
F EN ++
Sbjct: 618 LFLENVHYTE 627
>gi|294789575|ref|ZP_06754810.1| putative terminase B protein [Simonsiella muelleri ATCC 29453]
gi|294482512|gb|EFG30204.1| putative terminase B protein [Simonsiella muelleri ATCC 29453]
Length = 516
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 81/499 (16%), Positives = 151/499 (30%), Gaps = 75/499 (15%)
Query: 25 KLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA 84
FVL +P Q + + + K ++ +
Sbjct: 17 ANDPVGFVLGVC---------GNSVSPD--QEKLLNAIID-----------PTAKVSVVS 54
Query: 85 GRGIGKTTLNAWLVLWLMSTRP----------GISVICLANSETQLKTTLWAEVSKWLSL 134
G G GKT + LW + P G + A + Q+ +W E++ +
Sbjct: 55 GTGTGKTMSFGRIALWHLLCFPVAKYDGKIEIGSNTYIGAPAIKQVGDGVWKEITDAVQA 114
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ + + + + + + + G H Y
Sbjct: 115 MRANR-----ATAWLAEYIVVQAERVYIIDYKATWFITKFAMQQGQSVSIAGKHRFYQ-L 168
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKR 250
II DEA+G D I G T+ S + G FYE +K + W
Sbjct: 169 IIIDEAAGVSDEHYEVINGTQTQGGNRTLLA--SQGVKQGGFFYETHHKLNKENGGNWTA 226
Query: 251 FQIDTRTVEGIDPSFHEGII-ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+ + + E + G ++ RV V G+F + + ++ + IE ++
Sbjct: 227 LCFSSENSPFVTTEWLENVALQAGGKNTTEYRVRVLGKFAENEHENLLTRAQIEPRIDTL 286
Query: 310 PCPDPYAP----LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFD------WSKTDL 353
P + P L++ E D+ + G + + ++
Sbjct: 287 PIIEKGEPFGWLLLVDVGAGEYRDDSVCIAAKVIGDDDFGENARRVEYEANPIITNTKNI 346
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK---RAVDLEFCR 410
I + I++DA G C LE G+ V R+ + E
Sbjct: 347 HEFRGLIVEKAAQLSNVRILVDAGGIGLELCKMLENDGFDVERINWGNPCFKRAYKERFF 406
Query: 411 NRRTELHVKMADWLEFASLINH-------SGLIQNLKSLKS-FIVPNTGELAIESK---R 459
N+R V+ D + ++ + + F T I K R
Sbjct: 407 NQRACAMVRWRDAIRQGRVLFPKMENGLREKFLMQASRIPYGFTDTGTARYQIAQKAEMR 466
Query: 460 VKGAKSTDYSDGLMYTFAE 478
+G KS D +D + + F +
Sbjct: 467 KRGIKSPDIADAMSFAFLD 485
>gi|213156231|ref|YP_002318651.1| phage terminase [Acinetobacter baumannii AB0057]
gi|301346399|ref|ZP_07227140.1| phage terminase [Acinetobacter baumannii AB056]
gi|301594275|ref|ZP_07239283.1| phage terminase [Acinetobacter baumannii AB059]
gi|213055391|gb|ACJ40293.1| phage terminase [Acinetobacter baumannii AB0057]
Length = 663
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 85/430 (19%), Positives = 152/430 (35%), Gaps = 41/430 (9%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ + + + +T + +P G+H M + DEASG D
Sbjct: 268 YVGY------QSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGVDD 320
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTRTVEGI 261
+ G LT + +MTS P R +G FYE +K W + +
Sbjct: 321 AVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPLV 378
Query: 262 DPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-PLI 319
+ +YG + ++ V G+FP + I EE D + +
Sbjct: 379 SEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGYV 438
Query: 320 MGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ D+ G D++V+V+ RR V++ ++ D+ KI+ L+
Sbjct: 439 ITVDVGGGVGRDDSVIVVSKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKINELLL 498
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK---RAVDLEFCRNRRTELHVKMAD 422
+Y +++D N G YL+ G V + + N+R+ +V +A
Sbjct: 499 QYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAYVGLAR 558
Query: 423 WLEFASLINHS-----GLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ + + L + + + I SK + G KS D D +
Sbjct: 559 AIANGRFKIKTKKHNVKIKDQLIHVP-YRFDDFARYKILSKDEMKRMGIKSPDIGDAFAF 617
Query: 475 TFAENPPRSD 484
F EN ++
Sbjct: 618 LFLENVHYTE 627
>gi|332852816|ref|ZP_08434408.1| intein splicing region-containing protein [Acinetobacter baumannii
6013150]
gi|332871045|ref|ZP_08439658.1| intein splicing region-containing protein [Acinetobacter baumannii
6013113]
gi|332729027|gb|EGJ60377.1| intein splicing region-containing protein [Acinetobacter baumannii
6013150]
gi|332731805|gb|EGJ63085.1| intein splicing region-containing protein [Acinetobacter baumannii
6013113]
Length = 663
Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats.
Identities = 85/430 (19%), Positives = 152/430 (35%), Gaps = 41/430 (9%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ + + + +T + +P G+H M + DEASG D
Sbjct: 268 YVGY------QSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGVDD 320
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTRTVEGI 261
+ G LT + +MTS P R +G FYE +K W + +
Sbjct: 321 AVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPLV 378
Query: 262 DPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-PLI 319
+ +YG + ++ V G+FP + I EE D + +
Sbjct: 379 SEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGYV 438
Query: 320 MGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ D+ G D++V+V+ RR V++ ++ D+ KI+ L+
Sbjct: 439 ITVDVGGGVGRDDSVIVVSKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKINELLL 498
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK---RAVDLEFCRNRRTELHVKMAD 422
+Y +++D N G YL+ G V + + N+R+ +V +A
Sbjct: 499 QYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAYVGLAR 558
Query: 423 WLEFASLINHS-----GLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ + + L + + + I SK + G KS D D +
Sbjct: 559 AIASGRFKIKTKKHNVKIKDQLIHVP-YRFDDFARYKILSKDEMKRMGIKSPDIGDAFAF 617
Query: 475 TFAENPPRSD 484
F EN ++
Sbjct: 618 LFLENVHYTE 627
>gi|260551382|ref|ZP_05825582.1| phage terminase [Acinetobacter sp. RUH2624]
gi|260405545|gb|EEW99037.1| phage terminase [Acinetobacter sp. RUH2624]
Length = 663
Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats.
Identities = 85/430 (19%), Positives = 152/430 (35%), Gaps = 41/430 (9%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ + + + +T + +P G+H M + DEASG D
Sbjct: 268 YVGY------QSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGVDD 320
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTRTVEGI 261
+ G LT + +MTS P R +G FYE +K W + +
Sbjct: 321 AVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPLV 378
Query: 262 DPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-PLI 319
+ +YG + ++ V G+FP + I EE D + +
Sbjct: 379 SEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGYV 438
Query: 320 MGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ D+ G D++V+V+ RR V++ ++ D+ KI+ L+
Sbjct: 439 ITVDVGGGVGRDDSVIVVSKVWGEAQWGERARRVEVVDIPLCKNRDDILELFAKINELLL 498
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK---RAVDLEFCRNRRTELHVKMAD 422
+Y +++D N G YL+ G V + + N+R+ +V +A
Sbjct: 499 QYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAYVGLAR 558
Query: 423 WLEFASLINHS-----GLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ + + L + + + I SK + G KS D D +
Sbjct: 559 AIASGRFKIKTKKHNVKIKDQLIHVP-YRFDDFARYKILSKDEMKRMGIKSPDIGDAFAF 617
Query: 475 TFAENPPRSD 484
F EN ++
Sbjct: 618 LFLENVHYTE 627
>gi|153806881|ref|ZP_01959549.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
gi|149131558|gb|EDM22764.1| hypothetical protein BACCAC_01156 [Bacteroides caccae ATCC 43185]
Length = 513
Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats.
Identities = 87/489 (17%), Positives = 148/489 (30%), Gaps = 84/489 (17%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--------- 106
+ + ++ A+++G GK + A L M P
Sbjct: 27 RDALCARLDREQQAIIESVQHNPMTAVASGTARGKDFVAACASLCFMYLTPRFNEKGVLV 86
Query: 107 -GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
V A + Q+K + E+ + + K F + + D
Sbjct: 87 GNTKVAMTAPTGRQVKNIMTPEIRRLIRAARTKFPFCCPGRLV----------ADDIRTD 136
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
+ + + +++ G H M +I EASG +++ I G L N +
Sbjct: 137 YEEWFLTGFKADDNATESWSGFHAANTMFVI-TEASGISEIVYNAIEGNL---QGNSRML 192
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFH------------------- 266
+ NP +G Y D + +F++ + E +
Sbjct: 193 IVFNPNITTG--YAARAMKSDRFAKFRLSSLNAENVVKKQIVIPGQVDYEWVKDKVINWC 250
Query: 267 --------------EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ +D+ RV+V G FP+ D IP IE A
Sbjct: 251 SPIQQTDFNEGEGDFNWEGKLYRPNDLFRVKVLGMFPKVSEDVLIPYEWIEIANRNWQEL 310
Query: 313 D-----PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS---KTDLRTTNNKISGLV 364
P +G D+A G DN+V+ R G + + D +
Sbjct: 311 QASGFIPAKSCKLGVDVAGMGRDNSVLCPRYGNYVPQFDVHQSAGRADHMHVVGMTIPYL 370
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF-------CRNRRTELH 417
+K ID GA L + D N R L+
Sbjct: 371 KKKG-AKAFIDTIGEGAGVYSRLLEEEFTNAFSCKYSEGTDGLHDITGEYEFANMRAYLY 429
Query: 418 VKMADWLE-----FASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYS 469
+ DWL A+L L++ K + + G++ IE K + + +S DY
Sbjct: 430 WALRDWLNPKNGFGAALPPCDQLMEEATETK-WKFLSNGKVIIEPKEDVKKRIKRSPDYM 488
Query: 470 DGLMYTFAE 478
D L TF
Sbjct: 489 DALANTFYP 497
>gi|228924410|ref|ZP_04087639.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835241|gb|EEM80653.1| hypothetical protein bthur0011_53510 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 293
Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats.
Identities = 75/284 (26%), Positives = 124/284 (43%), Gaps = 30/284 (10%)
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
+ NP R SG FY+ N+ D +K ++ + E + +YG SDV RV
Sbjct: 1 MFLCGNPTRTSGVFYDSHNRDRDLYKIHKVSSLDSPRTSKDNIEVLKKKYGEGSDVWRVR 60
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
V G+FP+ + D+FIPL I+E+A + + P L +G D+A G D TV+ R G +
Sbjct: 61 VLGEFPKAEADAFIPLEIVEQAASCKVEPT-GETLDLGVDVARFGDDETVIAPRIGNKVF 119
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDA-------IIIDANNTGARTCDYLE------ML 390
L + K D T + L ++Y I +D + G D L+ L
Sbjct: 120 KLLNHYKQDTMETAGHVLKLAKEYMAKYKQLKRVDIKVDDSGVGGGVTDRLKEVIKSERL 179
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF------------ASLINHSGLIQN 438
+ VY V+ + +D E N E + D LE + N +I
Sbjct: 180 PFKVYPVVNNGKPLDDEHYDNAGAEGWAVVRDLLEENMKAFIQGEEPTMEIPNDEKMISQ 239
Query: 439 LKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
S + + + + G++A+E K + +G +S D +D ++ F +
Sbjct: 240 FSS-RKYRITSRGKIALERKEEMKKRGLQSPDRADAIVLAFYKP 282
>gi|184158505|ref|YP_001846844.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
gi|183210099|gb|ACC57497.1| hypothetical protein ACICU_02185 [Acinetobacter baumannii ACICU]
Length = 663
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 84/430 (19%), Positives = 151/430 (35%), Gaps = 41/430 (9%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT + LW + ++ A QLK +W E+S L+ L +
Sbjct: 208 HNTGKTASAGIVALWHLLFFDESIMMFTAPQIGQLKKQVWKEISINLARLKQGPLAWLAD 267
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ + + + +T + +P G+H M + DEASG D
Sbjct: 268 YVGY------QSELVYIKGYKEKWYVFAKTAPKHQPTNLAGNHGDNYMVWV-DEASGVDD 320
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTRTVEGI 261
+ G LT + +MTS P R +G FYE +K W + +
Sbjct: 321 AVLDVAFGALTHEDNRA--VMTSQPTRNAGMFYETHHKLSHRAGGVWIALTFNGEESPLV 378
Query: 262 DPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-PLI 319
+ +YG + ++ V G+FP + I EE D + +
Sbjct: 379 SEQSLQEQRQKYGSREDAQYKIRVLGEFPDLSDEFLITKRQTEEMYVGASIFDDHQFGYV 438
Query: 320 MGCDIAEE-GGDNTVVVL-------------RRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ D+ G D++V+V+ RR V++ ++ D+ KI+ L+
Sbjct: 439 ITVDVGGGVGRDDSVIVVSKVWGESQWGERARRVEVVDIPLCKNRDDILELFAKINELLL 498
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK---RAVDLEFCRNRRTELHVKMAD 422
+Y +++D N G YL+ G V + + N+R+ +V +
Sbjct: 499 QYPNANLVVDDNGAGKGLGQYLKKQGIFYVPVYWGSQCFSNDNRKEFTNKRSLAYVGLQR 558
Query: 423 WLEFASLINHS-----GLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ + + L + + + I SK + G KS D D +
Sbjct: 559 AIASGRFKIKTKKHNVKIKDQLIHVP-YRFDDFARYKILSKDEMKRMGIKSPDIGDAFAF 617
Query: 475 TFAENPPRSD 484
F EN ++
Sbjct: 618 LFLENVHYTE 627
>gi|111222161|ref|YP_712955.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a]
gi|111149693|emb|CAJ61385.1| hypothetical protein FRAAL2741 [Frankia alni ACN14a]
Length = 535
Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats.
Identities = 91/465 (19%), Positives = 144/465 (30%), Gaps = 59/465 (12%)
Query: 49 SAPRSWQLEFMEVVDAH-CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
P W + + V + N K A+ + GK+ + A V + T P
Sbjct: 54 DEPVRWARDRLGGVHLWSKQQEIINALRVHRKVAVPSCHDAGKSFVAAAAVAHWLDTHPP 113
Query: 108 IS--VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
S I A + Q++ LW E+ + L+ ++ W D
Sbjct: 114 GSAFAITTAPTFPQVRAILWREIRRLSRLM------NPPLGRVNQTEWLID--------- 158
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
R ++ F G H Y ++ DEA G P + + T NA +
Sbjct: 159 -DDLVAFGRKPADHDEGGFQGIHAQYP-LVVLDEAGGIPQQLWIAADSIATNENAR--IL 214
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI--------------DPSFHEGIIA 271
NP + F ++ P W I ++ E
Sbjct: 215 AIGNPDDPTSYFAQVCELPS--WHVITIPAAETPAFTGEQIPDDLRQALLSRAWAEEKRR 272
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY---APLIMGCDIAEEG 328
+G D+ V +V QFP+ I + + + P P P+ +G D+ E
Sbjct: 273 EWGEDNPVYISKVLAQFPKDVAWKVIKASDVAKRRIGRDEPWPASKLRPVCLGVDVGEGR 332
Query: 329 GDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
D TVV RRG + + I V + IDA G L
Sbjct: 333 -DWTVVRERRGVQAGREWQARTPEPEQAVKLIGQAVLITGAKTVNIDAGGPGWGIAAALR 391
Query: 389 ML-------GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS------LINHSGL 435
G V + ++ + E N R EL + L + N
Sbjct: 392 GWLKQHKVRGVAVNPIRFGAKSREPEKYLNMRAELWWGVGRLLSEQGGWDLSVMENADDT 451
Query: 436 IQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
L + + IESK R + +S D +D L+ FA
Sbjct: 452 TAQLLD-PIWREGAGDRIVIESKEELRKRTGRSPDNADALLLAFA 495
>gi|119386463|ref|YP_917518.1| PBSX family phage terminase large subunit [Paracoccus denitrificans
PD1222]
gi|119377058|gb|ABL71822.1| phage terminase, large subunit, PBSX family [Paracoccus
denitrificans PD1222]
Length = 441
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 79/423 (18%), Positives = 138/423 (32%), Gaps = 25/423 (5%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ T PG+S ICL + + L +++
Sbjct: 26 GGRGSGKSWDRAMHMIVRHLTEPGLSSICLRDVQKSLDQSVFK-------------LLVE 72
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ L A V + + +E + +EA+
Sbjct: 73 TAARLGVAEAIRPVESDRIIRTPGNGIIAFNGMNEFNAENIKSL--EGFDIAWWEEAATA 130
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPR-RLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
+ L + + ++ R + D + + R
Sbjct: 131 GQGPLDMLRPTLRKPGSQIWFTYNPRLRSDPVDVMMRQDARFADSRTVVEANWRDNPFRG 190
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
P E + D R G + + FI ++ EA+ R+P L++G
Sbjct: 191 PELEEERLLDLAGDEARYRHIWEGDYEAESDMQFIGGGLVREAMARQPFSQIGDELVLGV 250
Query: 323 DIAEEGGDNTVVVLRRGPVI--EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D+A G D +V+ RRG E D ++ +++ PD + ID G
Sbjct: 251 DVARFGDDRSVIWARRGRDAQTELPIIMKGADTMAVAARVMAEIDRLHPDGVFIDEGGVG 310
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDL----EFCRNRRTELHVKMADWLEFASLINHSGLI 436
D +GY V V +A CRN+R ++ M +WL I S +
Sbjct: 311 GGVIDRCRQMGYSVVGVNFGGKADRAIEGVPKCRNKRAQMWATMREWLRSGGCIPDSRDL 370
Query: 437 QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
+ + + + IE K + +G S D +D L TFA + +
Sbjct: 371 EMDLTGPLYSFDVNNAIEIEKKSDMKKRGVSSPDEADALALTFAYPVVPRSIQRQQEARA 430
Query: 494 QYE 496
Q +
Sbjct: 431 QED 433
>gi|134287454|ref|YP_001109621.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
gi|134131876|gb|ABO60570.1| hypothetical protein Bcep1808_7700 [Burkholderia vietnamiensis G4]
Length = 509
Score = 212 bits (540), Expect = 9e-53, Method: Composition-based stats.
Identities = 84/456 (18%), Positives = 155/456 (33%), Gaps = 47/456 (10%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
++ H + ++ + + + ++S+G G GKT+ A + LW + + I A +
Sbjct: 34 LKAPTHHQIQMFDSVSKQGSRTSVSSGHGTGKTSGFAIIALWHLLCYYLSNTILTAPKIS 93
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ +W E + + + N S + + + ++ + ++
Sbjct: 94 TVSDGVWKEFADLSTKISNGPQ------SWIWEYFVIESERVYVRGYKLNWFVIAKSAPR 147
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
P+ G H + + + DEASG PD I G LT+ S P R SG FY
Sbjct: 148 GSPENLAGAHRDW-LLWLADEASGIPDDNFGVITGSLTDERNRMCLA--SQPTRSSGFFY 204
Query: 239 EIFNKPL----DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
E + W ++ + F +Y + +++V G+FP+
Sbjct: 205 ETHHALSRAEGGPWNNLVFNSEFSPIVSAKFIAEKKLQYTEEE--YQIKVQGRFPENSSK 262
Query: 295 SFIPLNIIEEALNRE-PCPDPYAPLIMGCDIAEEG-GDNTV-------------VVLRRG 339
+ IE + R PD + ++ D+ G D TV + RR
Sbjct: 263 YLVGPQAIEACVGRTVIKPDEHWGWLLPVDVGGGGWRDETVMPALHVIGRGEYGMDARRA 322
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
+I + D + I + +IDA G C L++ G+ YR +
Sbjct: 323 QLISVPLHSNTQDPAQLHGVIVHAARERSNATAMIDAGGMGLIVCKQLDLDGFSQYRKVN 382
Query: 400 QKRAV----DLEFCRNRRTELHVKMADWLEFASL-INHS-------GLIQNLKSLKSFIV 447
+ N+R + A + IN L++ + F
Sbjct: 383 WGNPNFAKEYKDRYVNQRAQACCGFARAITEGRFGINPDVPKSFVKKLVKQGSRIPYFWD 442
Query: 448 PNTGELAIESK----RVKGAKSTDYSDGLMYTFAEN 479
I K + S D D L + F E+
Sbjct: 443 EKARR-QIMKKEDMREKENLPSPDVFDALSFAFLED 477
>gi|68250076|ref|YP_249188.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
gi|68058275|gb|AAX88528.1| predicted phage terminase large subunit [Haemophilus influenzae
86-028NP]
Length = 447
Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 69/441 (15%), Positives = 149/441 (33%), Gaps = 59/441 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C + + ++ ++ + +L +++F++
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLGLQNFFDV 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + +G + ++ + + G + +E
Sbjct: 86 QKTQI-------------IGQNGSRFTFAGLKTNITSIKSMTGI-----DVVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQ--IIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIM 320
E + D ++ R G+ + I IE A++ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIECAVDAHLKLGFTAKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D+ G V+ + W D+ + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADSNDNAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEML--GYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL--- 424
A + + L V + + N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYKT 365
Query: 425 ----EFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
+ + LI + S N G + +ESK + +G S
Sbjct: 366 YRAVKHGDVYPDDELISLSSNIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPS 425
Query: 466 TDYSDGLMYTFAENPPRSDMD 486
+ +D L+ +A P+S +D
Sbjct: 426 PNMADALVMCYATTKPKSLLD 446
>gi|260580755|ref|ZP_05848581.1| phage terminase large subunit [Haemophilus influenzae RdAW]
gi|260092572|gb|EEW76509.1| phage terminase large subunit [Haemophilus influenzae RdAW]
Length = 447
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 69/441 (15%), Positives = 149/441 (33%), Gaps = 59/441 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C + + ++ ++ + +L + +F++
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLSLQAFFDV 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + +G + ++ + + G + +E
Sbjct: 86 QKTQI-------------IGQNGSRFTFAGLKTNITSIKSMTGI-----DVVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQ--IIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIM 320
E + D ++ R G+ + I IE A++ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D+ G V+ + W D+ + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEML--GYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL--- 424
A + + L V + + N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYKT 365
Query: 425 ----EFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
++ + LI + S N G + +ESK + +G S
Sbjct: 366 YRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPS 425
Query: 466 TDYSDGLMYTFAENPPRSDMD 486
+ +D L+ +A P+S +D
Sbjct: 426 PNMADALVMCYAPTKPKSLLD 446
>gi|189460514|ref|ZP_03009299.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
gi|189432758|gb|EDV01743.1| hypothetical protein BACCOP_01155 [Bacteroides coprocola DSM 17136]
Length = 556
Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats.
Identities = 88/499 (17%), Positives = 159/499 (31%), Gaps = 93/499 (18%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--------- 106
E + V + + + ++++G GK + A + + P
Sbjct: 57 REALGVTLDKEQQEILSSVQYNRRTSVASGTARGKDFVAACAAICFLYLTPRWRKNSLGE 116
Query: 107 -----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
V A ++ Q+K + E+S+ + + + L+ +
Sbjct: 117 IELVENTKVALTAPTDRQVKNIMMPEISRLFNRAKARGVELIGKLNAY-----------D 165
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
+ ++ + E + + G H + M ++ EA+G D I G L + ++
Sbjct: 166 IRTNNDEWFLTGFKADEHNHEAWSGFHAVHTMFVV-TEATGIGDDTFAAIEGNL-QGDSR 223
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFH--------------- 266
+ N Y ++ D W ++++++ T I
Sbjct: 224 ILLVFNPNKT----VGYAAKSQKGDRWHKYRLNSLTAPNIASKKIIIPGQVDYDWVLDKL 279
Query: 267 EGIIA------------------RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
E ++ D+ R +V G FP+ D D+ IP +EEA R
Sbjct: 280 ENWCEKISPDEIISEMDDFEFEGQWYRPEDLFRKKVLGLFPKVDEDTLIPRQWLEEAHER 339
Query: 309 EPCPDPYAPL-----IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK---TDLRTTNNKI 360
PL I+G D+A G D T VLRR + + D KI
Sbjct: 340 WKQAKGREPLRADLNILGVDVAGMGRDATCYVLRRDNWVASFDTHNSGGVADHMKVAGKI 399
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDY---LEMLGYHVYRVLGQKRAVDL----------- 406
+ + ID GA LE +++ + A
Sbjct: 400 MVARRQNIGLYVSIDTIGEGAGVYSRCVELEDEPHYILSCKYSESAKTPNGRELSDITGQ 459
Query: 407 EFCRNRRTELHVKMADWL----EFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---R 459
N R L + DWL +++ + F V + G+L IE K +
Sbjct: 460 NKFFNMRAYLFWAVRDWLNPRNNTGAMLPPDDKFDEEATEIKFSVKSNGKLYIEPKEDIK 519
Query: 460 VKGAKSTDYSDGLMYTFAE 478
+ +S D D L TF
Sbjct: 520 ERLGRSPDKFDALANTFYP 538
>gi|329119006|ref|ZP_08247700.1| phage terminase large subunit [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464879|gb|EGF11170.1| phage terminase large subunit [Neisseria bacilliformis ATCC
BAA-1200]
Length = 449
Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats.
Identities = 64/433 (14%), Positives = 122/433 (28%), Gaps = 56/433 (12%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A L + + R G ++C + L +++ + E
Sbjct: 20 GGRGSGKSYFLAELAVEVA-RRIGTVILCAREFQGSLDDSVY------------QLLTET 66
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + + + G +EA
Sbjct: 67 IARLGYTQEFEILKSSIRHKGTGAKFVFYGVKNNITKIKSIQGV-----GICWVEEAEAV 121
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI-D 262
++ + W+ + L + P D + + D
Sbjct: 122 TKNSWDVLIPSIRGDKNAEIWVSFNPKNILDDTYQRFIVHPPKDSIVLKANYDINPHFAD 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIM 320
++ D D+ R G+ + I + IE A++ I+
Sbjct: 182 TPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAAIDAHEKLGFSAAGRRIL 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D VLR G V+ + W D+ + +K+ ++ D I+ D G
Sbjct: 242 GFDVADEGDDANATVLRHGSVVTDMQQWRGQDVIYSADKVYLYAQEQNVDRIVYDNIGVG 301
Query: 381 ARTCDYLEMLGYHVYRVLGQKRA-------------VDLEFCRNRRTELHVKMADWL--- 424
A V + + + N + + + D
Sbjct: 302 AGVKAQFRRKNGKVQTLGFNAGGAVYKPDAKYTDDKKNRDMFANIKAQAWWMVRDRFYKT 361
Query: 425 ----EFASLINHSGLIQ------------NLKSLKSFIVPNTGELAIESK---RVKGAKS 465
LI S G + ESK + +G S
Sbjct: 362 WRAVHHGDSYPEDQLISLSSSLHELEYLTAELSRPQVDYDQNGRVKAESKKDMKKRGIPS 421
Query: 466 TDYSDGLMYTFAE 478
+ +D L+ FA
Sbjct: 422 PNRADALVMVFAP 434
>gi|145629503|ref|ZP_01785301.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|145641440|ref|ZP_01797019.1| predicted phage terminase large subunit [Haemophilus influenzae
R3021]
gi|144978346|gb|EDJ88110.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|145273983|gb|EDK13850.1| predicted phage terminase large subunit [Haemophilus influenzae
22.4-21]
gi|309750959|gb|ADO80943.1| Probable bacteriophage terminase, large subunit [Haemophilus
influenzae R2866]
Length = 447
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 69/441 (15%), Positives = 148/441 (33%), Gaps = 59/441 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C + + ++ ++ + +L + +F++
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQVEMLGLQDFFDV 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + +G + ++ + + G + +E
Sbjct: 86 QKTQI-------------IGQNGSRFTFAGLKTNITSIKSMTGI-----DVVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQ--IIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIM 320
E + D ++ R G+ + I IE A++ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D G V+ + W D+ + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEML--GYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL--- 424
A + + L V + + N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKNQDMFSNIKAQSWWALRDRFYKT 365
Query: 425 ----EFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
++ + LI + S N G + +ESK + +G S
Sbjct: 366 YRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPS 425
Query: 466 TDYSDGLMYTFAENPPRSDMD 486
+ +D L+ +A P+S +D
Sbjct: 426 PNMADALVMCYAPTKPKSLLD 446
>gi|301170180|emb|CBW29784.1| predicted phage terminase large subunit [Haemophilus influenzae
10810]
Length = 447
Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats.
Identities = 67/441 (15%), Positives = 147/441 (33%), Gaps = 59/441 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C + + ++ ++ + +L + +F++
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQVEMLGLQDFFDV 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + + + ++ + + G + +E
Sbjct: 86 QKTQI-------------IEQNGSRFTFAGLKTNITSIKSMTGI-----DVVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQ--IIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIM 320
E + D ++ R G+ + I IE A++ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D+ G V+ + W + + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGYVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEML--GYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL--- 424
A + + L V + + N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYKT 365
Query: 425 ----EFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
++ + LI + S N G + +ESK + +G S
Sbjct: 366 YRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPS 425
Query: 466 TDYSDGLMYTFAENPPRSDMD 486
+ +D L+ +A P+S +D
Sbjct: 426 PNMADALVMCYAPTKPKSLLD 446
>gi|309379923|emb|CBX21334.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 449
Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats.
Identities = 66/450 (14%), Positives = 127/450 (28%), Gaps = 57/450 (12%)
Query: 68 NSVNNPNPEVFKGAIS-AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
N P + + GRG GK+ A L + +S R G ++C + L +++
Sbjct: 3 NPYFKPLIRKARYKVLYGGRGSGKSYFLAELAV-EVSRRIGTVILCAREFQGSLDDSVY- 60
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
+ E + + + + + + + G
Sbjct: 61 -----------QLLIETIERLGYTEEFDILKSTITHKGTGAKFVFYGIKNNVTKIKSIQG 109
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
+EA ++ + W+ + L + P
Sbjct: 110 V-----GVCWVEEAEAVTKNSWDVLIPSIRGDKNAEIWVSFNPKNILDDTYRRFIVHPPQ 164
Query: 247 DWKRFQIDTRTVEGI-DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
D + + D ++ D D+ R G+ + I + IE A
Sbjct: 165 DSIVLKANYDINPHFADTPLLADMLECKERDEDLYRHIWLGEPVADSELAIIKPSWIEAA 224
Query: 306 LNREPCP--DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL 363
++ I+G D+A+EG D VLR G V+ + W D+ + +K+
Sbjct: 225 IDAHEKLGFQAAGKRILGFDVADEGDDANATVLRHGSVVTDMRQWRGQDVIYSADKVYLY 284
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA-------------VDLEFCR 410
++ D I+ D GA V + + +
Sbjct: 285 AQEQDIDRIVYDNIGVGAGVKAQFRRKRGKVQTLGFNAGGAVYKPDAKYTDDKKNRDMFA 344
Query: 411 NRRTELHVKMADWL-------EFASLINHSGLIQ------------NLKSLKSFIVPNTG 451
N + + + D L+ S G
Sbjct: 345 NIKAQAWWMVRDRFYKTWRAVHHGDSYPEDQLVSLSSSLHELEYLTAELSRPQVDYDQNG 404
Query: 452 ELAIESK---RVKGAKSTDYSDGLMYTFAE 478
+ ESK + +G S + +D L+ FA
Sbjct: 405 RVKAESKKDMKKRGIPSPNRADALVMAFAP 434
>gi|319776448|ref|YP_004138936.1| phage terminase large subunit [Haemophilus influenzae F3047]
gi|319897217|ref|YP_004135412.1| phage terminase large subunit [Haemophilus influenzae F3031]
gi|329123931|ref|ZP_08252483.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
gi|317432721|emb|CBY81084.1| predicted phage terminase large subunit [Haemophilus influenzae
F3031]
gi|317451039|emb|CBY87270.1| predicted phage terminase large subunit [Haemophilus influenzae
F3047]
gi|327468126|gb|EGF13613.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
Length = 447
Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 69/441 (15%), Positives = 148/441 (33%), Gaps = 59/441 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C + + ++ ++ + +L + +F++
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLGLQAFFDV 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + +G + ++ + + G + +E
Sbjct: 86 QKTQI-------------IGQNGSRFTFAGLKTNITSIKSMTGI-----DVVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQ--IIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIM 320
E + D ++ R G+ + I IE A++ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D G V+ + W D+ + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEML--GYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL--- 424
A + + L V + + N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKNQDMFSNIKAQSWWALRDRFYKT 365
Query: 425 ----EFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
++ + LI + S N G + +ESK + +G S
Sbjct: 366 YRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPS 425
Query: 466 TDYSDGLMYTFAENPPRSDMD 486
+ +D L+ +A P+S +D
Sbjct: 426 PNMADALVMCYAPTKPKSLLD 446
>gi|159897183|ref|YP_001543430.1| hypothetical protein Haur_0654 [Herpetosiphon aurantiacus ATCC
23779]
gi|159890222|gb|ABX03302.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 472
Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 88/490 (17%), Positives = 151/490 (30%), Gaps = 82/490 (16%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPN-PEVFKGAISAGRGIGKTTLNAWLVLWLMS 103
L P ++ E + V + ++ + A +GKT L LV W
Sbjct: 2 LPYAHDPVAYAREVLGEVWWTKQELIARSLLTPPYRTLVKACHKVGKTHLGGGLVNWWYD 61
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
+ V+ A ++ Q++ LW EV ++ L
Sbjct: 62 SFDPGLVLTTAPTDRQVRDLLWKEVRMQRRG----------------RAGFTGPKSPRLE 105
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
H+ ++ + D+F GHH+ + I DEA G V E A
Sbjct: 106 STPDHF---AHGFTAKDGDSFQGHHSPH-TLFIFDEAVGVASVFWETAESMFNEGGA--- 158
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI---------------------- 261
W+ NP S + Y + W + I
Sbjct: 159 WLAIFNPTDTSSQAY--AEELSGGWHVISMSVLEHPNILAELQGLPPPFPSAIRLSRVDT 216
Query: 262 ---------DPSFHEG-----IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
P + + + + G++P Q ++ + A
Sbjct: 217 LLKKWCRALSPEEPKRATDIHWRDAWYRPGPIAEARLLGRWPSQATNNVWSDGAFQVA-E 275
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
P P +GCD+A G D T + +RRG + + T ++ L +Y
Sbjct: 276 SLLLPASDEPCELGCDVARYGDDFTEIHVRRGGHSLYHEAANGWSTVETAGRLKQLANEY 335
Query: 368 RPDAII--------IDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
+ ID + G D + GY V G + A D E NRR+EL
Sbjct: 336 GRRCGVDGRAVAVKIDDDGIGGGVVDLAD--GYTFLGVSGARTAYDPEKYPNRRSELWFS 393
Query: 420 MADWLEFASLIN---HSGLIQNL---KSLKSFIVPNTGELAIESK---RVKGAKSTDYSD 470
+A+ L + + L ++ + G +E K + + +S D D
Sbjct: 394 VAERAMEQRLSFVALDAETRRELRRQAMAPTWKQDSQGRRVVEPKADTKKRIKRSPDGMD 453
Query: 471 GLMYTFAENP 480
+ +A P
Sbjct: 454 AVNLAYAPAP 463
>gi|229844502|ref|ZP_04464642.1| predicted phage terminase large subunit [Haemophilus influenzae
6P18H1]
gi|229812751|gb|EEP48440.1| predicted phage terminase large subunit [Haemophilus influenzae
6P18H1]
Length = 452
Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats.
Identities = 64/434 (14%), Positives = 144/434 (33%), Gaps = 60/434 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ T+P I V+C + + ++ ++ + +L + +F++
Sbjct: 27 GGRGSGKSFSIARALVLRAYTQP-IRVLCCREIQKSISDSVIQMLADQIEMLGLQAFFDV 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + +G + ++ + + G + +E
Sbjct: 86 QKTQI-------------IGQNGSRFTFAGLKTNITSIKSMTGI-----DVVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDVLIPTIREDGSQ--IIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIM 320
E ++ D ++ R G+ I I+ A++ I+
Sbjct: 186 KELMEDMVQMRERDYELYRHVYEGEPVADSDKVIIKPLWIDAAVDAHKKLGFVAAGRKII 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D G V+ + +W D+ + ++ ++ + I+ D+ G
Sbjct: 246 GFDVADEGSDANANAFVHGSVVLRMDEWHGEDVIGSADRTRLNALEFGTNEIVYDSIGVG 305
Query: 381 ART---CDYLEMLGYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL-- 424
A L+ + + + N + + ++ D
Sbjct: 306 AGVKAHYHRLDDKSIRINGFNAGGAVFEPDAEYVYGKTNRDMFANIKAQAWWRLRDRFYK 365
Query: 425 --------------EFASL---INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
E SL I ++ + G + +ESK + +G
Sbjct: 366 TYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGIP 425
Query: 465 STDYSDGLMYTFAE 478
S + +D L+ FA
Sbjct: 426 SPNKADALVMCFAP 439
>gi|329122215|ref|ZP_08250807.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
gi|327474100|gb|EGF19511.1| phage terminase large subunit [Haemophilus aegyptius ATCC 11116]
Length = 452
Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats.
Identities = 64/434 (14%), Positives = 143/434 (32%), Gaps = 60/434 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ T+P I V+C + + ++ ++ + +L + +F++
Sbjct: 27 GGRGSGKSFSIARALVLRAYTQP-IRVLCCREIQKSISDSVIQMLADQIEMLGLQAFFDV 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + +G + ++ + + G + +E
Sbjct: 86 QKTQI-------------IGQNGSRFTFAGLKTNITSIKSMTGI-----DVVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDVLIPTIREDGSQ--IIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIM 320
E + D ++ R G+ I I+ A++ I+
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDKVIIKPLWIDAAVDAHKKLGFVAAGRKII 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D G V+ + +W D+ + ++ ++ + I+ D+ G
Sbjct: 246 GFDVADEGSDANANAFVHGSVVLRMDEWRGEDVIGSADRTRLNALEFGANEIVYDSIGVG 305
Query: 381 ART---CDYLEMLGYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL-- 424
A L+ + + + N + + ++ D
Sbjct: 306 AGVKAHYHRLDDKSIRINGFNAGGAVFEPDVEYVYGKTNRDMFANIKAQAWWRLRDRFYK 365
Query: 425 --------------EFASL---INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
E SL I ++ + G + +ESK + +G
Sbjct: 366 TYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGIP 425
Query: 465 STDYSDGLMYTFAE 478
S + +D L+ FA
Sbjct: 426 SPNKADALVMCFAP 439
>gi|282880015|ref|ZP_06288737.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
5C-B1]
gi|281306129|gb|EFA98167.1| hypothetical protein HMPREF9019_0946 [Prevotella timonensis CRIS
5C-B1]
Length = 459
Score = 207 bits (525), Expect = 5e-51, Method: Composition-based stats.
Identities = 83/466 (17%), Positives = 155/466 (33%), Gaps = 89/466 (19%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRP----------GISVICLANSETQLKTTLWAEVS 129
A+++G GK + A + M P + A + Q + EV+
Sbjct: 2 VAVASGTSRGKDFVAACAAMCFMYLTPRWNINHRLIQNTKIAMTAPTGRQCINIMIPEVA 61
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ + + ++ + S++ + + G H
Sbjct: 62 RLFRNASVLPGRMLSDG---------------IRTNNAEWFLTAFKASDDNTEAWSGFHA 106
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
M ++ EASG + I G L N ++ NP +G Y +K
Sbjct: 107 VNTMFVV-TEASGVSETTFNAIEGNL---QGNSRLLLVFNPNVTTG--YAAKAMKSSRFK 160
Query: 250 RFQIDTRTVEGI-----------DPSFHEGIIARY----------------------GLD 276
+F++++ E + D + + + +
Sbjct: 161 KFRLNSLNAENVIKKKNVIPGQVDYEWVKDKVHNWCELIQKEDFNNGEGDFMFEDSFYRP 220
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL-----IMGCDIAEEGGDN 331
+D+ R++V G FP+ D+ IP +E A +R + + +G D+A G D+
Sbjct: 221 NDLFRIKVLGLFPKASEDTLIPFEWLELAHDRWKKLNAEDFVPRKYARVGIDVAGMGRDS 280
Query: 332 TVVVLRRGPVIEHLFDWS---KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ VLR G + + K D + + + ++ID GA L
Sbjct: 281 SCFVLRYGNYVPEIKIHQSGGKADHMKVAGEAVQWLVEKN-TKVMIDTIGEGAGVYSRLL 339
Query: 389 MLGY-HVYRVLGQKRAVDLE------FCRNRRTELHVKMADWLE-----FASLINHSGLI 436
LGY + Y + L N R + + DWL +L L
Sbjct: 340 ELGYDNAYSCKFSEGTKGLHDITGQYEFANMRAYCYWAVRDWLNPKNGFNPALPPCDELD 399
Query: 437 QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
L + + ++G + IE K + + +S D +D L+ TF N
Sbjct: 400 AELTEV-HWSFQSSGSIIIEPKENIKSRLKRSPDRADALISTFYPN 444
>gi|257459276|ref|ZP_05624390.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
gi|257443289|gb|EEV18418.1| phosphatase, Ppx/GppA family [Campylobacter gracilis RM3268]
Length = 431
Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats.
Identities = 85/434 (19%), Positives = 145/434 (33%), Gaps = 35/434 (8%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + + I GR G T A + + G ++ +
Sbjct: 3 ELALDLRYTPQQKAVFFQNDARFCTIEKGRRFGFTKGTANACIEWLL--EGQKILWVDTI 60
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
LK L LP + W + K
Sbjct: 61 AANLKRYFERYFLPELRQLPKELW--------------------NWNAQDKQLKICGGYL 100
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGT---PDVINLGILGFLTE-RNANRFWIMTSNPRR 232
+ +I +EA P + + I L + N+ F +
Sbjct: 101 DFRSAERPENIEGFGYDTVILNEAGIILKDPYLWDNAISPMLLDNPNSRAFIGGVPKGKN 160
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQQ 291
+ + W+ FQ + + + ++A G DSDV R E+ G+F
Sbjct: 161 KFFDLAQRGMRNEKGWRNFQFSSYDNPLLQKEEIDRLVAELGGADSDVARQEIFGEFLDT 220
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+S L IE A ++ D AP+I D+A EG D +V+ R+G +E L +
Sbjct: 221 TSNSVFSLAAIEAAFRKQRYFDAGAPVIWALDVAREGDDESVLCKRQGDSVEPLKPYRIA 280
Query: 352 DLRTTNNKISGLVEK--YRPDAIIIDANNTGARTCDYLEMLGYH--VYRVLGQKRAVDLE 407
+I G E+ +P AI ID GA D L LG V G +A D
Sbjct: 281 STSELAREIYGEYERTDLKPHAIYIDTIGVGAGVFDTLCDLGLRGIVREAKGSFKASDER 340
Query: 408 FCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
N+R E++ + + L ++ L + L+++ + + K + + +
Sbjct: 341 KYANKRAEMYFNLREKLPLLAIAPDEELKRQLQTIAFY-FDKKERYLLMPKEGIKKEYGR 399
Query: 465 STDYSDGLMYTFAE 478
S D +D L +F +
Sbjct: 400 SPDRADALAMSFFD 413
>gi|298387330|ref|ZP_06996883.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|298259999|gb|EFI02870.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length = 500
Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats.
Identities = 95/493 (19%), Positives = 156/493 (31%), Gaps = 90/493 (18%)
Query: 53 SWQL---EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI- 108
W + + +V + A+++G GK + A L M P
Sbjct: 15 DWCAFASDVLRANLDEEQKAVLRSVQKNPMTALASGTSRGKDFVAACAALCFMYLTPEWD 74
Query: 109 ---------SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
+ A S+ Q++ + EV + +
Sbjct: 75 DDGNLIRNTKIALSAPSQRQVENIMTPEVRRLFRNAGILPGRLV---------------A 119
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ D + Y + + + G H M +I EASG + I I G L
Sbjct: 120 NDIRTDYEEYFLTGFKADNKNQEVWSGFHAANVMFVI-TEASGVSETIFSAIEGNL---Q 175
Query: 220 ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP-----------SFHEG 268
N ++ NP +G Y D + +F++D+ + + E
Sbjct: 176 GNSRLLLVFNPNITTG--YAANAMKSDRFAKFRLDSLNATNVTAKREIIPGQVNYEWVED 233
Query: 269 IIARY----------------------GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
+ + +D+ R++V G FP+ D IP IE A
Sbjct: 234 KVKHWCTPITKEEYNEGEGDFLFENNLYRPNDLFRIKVRGMFPKVAEDVLIPYEWIEIAN 293
Query: 307 NREPCPDPYAP---LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS---KTDLRTTNNKI 360
R PY P +G D+A G DN+V R G + + K K
Sbjct: 294 KRWQENHPYRPRKSCKLGVDVAGMGRDNSVFCPRYGNYVSQFDVFQSAGKASHMHVVGKA 353
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGY-HVYRVLGQKRAVDLE------FCRNRR 413
++ D I ID GA L G +++ V + A L N R
Sbjct: 354 LS-YKRTDRDIIFIDTIGEGAGVYSRLVEQGIRNIFSVKNSQGAKGLHDITGEYSFANMR 412
Query: 414 TELHVKMADWLEFA-----SLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
L+ + DWL+ L + K + + G++ IE K + + +S
Sbjct: 413 AYLYWALRDWLDPKNNFFPMLPPCDQFTEEATETK-WKFRSDGKILIEPKEEIKKRIKRS 471
Query: 466 TDYSDGLMYTFAE 478
DY D L TF
Sbjct: 472 PDYMDALSETFYP 484
>gi|145629819|ref|ZP_01785613.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|148827544|ref|YP_001292297.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
gi|144977965|gb|EDJ87753.1| predicted phage terminase large subunit [Haemophilus influenzae
22.1-21]
gi|148718786|gb|ABQ99913.1| hypothetical protein CGSHiGG_04845 [Haemophilus influenzae PittGG]
Length = 449
Score = 202 bits (514), Expect = 9e-50, Method: Composition-based stats.
Identities = 60/434 (13%), Positives = 135/434 (31%), Gaps = 59/434 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A L++ + R + V C + + ++ ++ + L
Sbjct: 23 GGRGSGKSWGVAQLLVEIAV-RTKVRVFCGRELQNSMSDSVIKLIADTIEDL-------- 73
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + + G + +EA
Sbjct: 74 ----GYLEEFEVQRNAIYCLKTGSEFMFYGIKNNPNKIKSLEGI-----DLVWIEEAENV 124
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
+ ++ + + + + +T NP+ + Y+ F P + +I+
Sbjct: 125 SNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFP 182
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIM 320
+ + D ++ R G+ I IE A++ P I+
Sbjct: 183 ETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 242
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A++G D+ G V+ + +W D+ + ++ ++ + I+ D+ G
Sbjct: 243 GFDVADDGVDSNANAFVHGSVVLRVDEWHGEDVIGSADRTRLNALEFGANEIVYDSIGVG 302
Query: 381 ART---CDYLEMLGYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL-- 424
A L+ + + + N + + + D
Sbjct: 303 AGVKAHYHRLDDKSIRINGFNAGGAVFEPDAEYVYGKTNRDMFANIKAQAWWCLRDRFYK 362
Query: 425 --------------EFASL---INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
E SL I ++ + G + +ESK + +G
Sbjct: 363 TYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGIP 422
Query: 465 STDYSDGLMYTFAE 478
S + +D L+ FA
Sbjct: 423 SPNKADALVMCFAP 436
>gi|68249883|ref|YP_248995.1| phage terminase large subunit [Haemophilus influenzae 86-028NP]
gi|68058082|gb|AAX88335.1| predicted phage terminase large subunit [Haemophilus influenzae
86-028NP]
Length = 438
Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats.
Identities = 60/434 (13%), Positives = 136/434 (31%), Gaps = 59/434 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A L++ + R + V C + + ++ ++ + L
Sbjct: 12 GGRGSGKSWGVAQLLIEIAV-RTKVRVFCGRELQNSMSDSVIKLIADTIEDL-------- 62
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + + G + +EA
Sbjct: 63 ----GYLEEFEVQRNAIYCLKTGSEFMFYGIKNNPNKIKSLEGI-----DLVWIEEAENV 113
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
+ ++ + + + + +T NP+ + Y+ F P + +I+
Sbjct: 114 SNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFP 171
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIM 320
+ + D ++ R G+ I IE A++ P I+
Sbjct: 172 ETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 231
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A++G D+ G V+ + +W D+ + ++ ++ + I+ D+ G
Sbjct: 232 GFDVADDGVDSNANAFVHGSVVLRVDEWRGEDVIGSADRTRLNALEFGANEIVYDSIGVG 291
Query: 381 ART---CDYLEMLGYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL-- 424
A L+ + + + N + + ++ D
Sbjct: 292 AGVKAHYHRLDDKSIRINGFNAGGAVFEPDAEYVYGKTNRDMFANIKAQAWWRLRDRFYK 351
Query: 425 --------------EFASL---INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
E SL I ++ + G + +ESK + +G
Sbjct: 352 TYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGIP 411
Query: 465 STDYSDGLMYTFAE 478
S + +D L+ FA
Sbjct: 412 SPNKADALVMCFAP 425
>gi|260583110|ref|ZP_05850891.1| phage terminase large subunit [Haemophilus influenzae NT127]
gi|260093822|gb|EEW77729.1| phage terminase large subunit [Haemophilus influenzae NT127]
Length = 445
Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats.
Identities = 60/434 (13%), Positives = 135/434 (31%), Gaps = 59/434 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A L++ + R + V C + + ++ ++ + L
Sbjct: 19 GGRGSGKSWGVAQLLVEIAV-RTKVRVFCGRELQNSMSDSVIKLIADTIEDL-------- 69
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + + G + +EA
Sbjct: 70 ----GYLEEFEVQRNAIYCLKTGSEFMFYGIKNNPNKIKSLEGI-----DLVWIEEAENV 120
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
+ ++ + + + + +T NP+ + Y+ F P + +I+
Sbjct: 121 SNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFP 178
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIM 320
+ + D ++ R G+ I IE A++ P I+
Sbjct: 179 ETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 238
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A++G D+ G V+ + +W D+ + ++ ++ + I+ D+ G
Sbjct: 239 GFDVADDGVDSNANAFVHGSVVLRVDEWHGEDVIGSADRTRLNALEFGANEIVYDSIGVG 298
Query: 381 ART---CDYLEMLGYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL-- 424
A L+ + + + N + + + D
Sbjct: 299 AGVKAHYHRLDDKSIRINGFNAGGAVFEPDAEYVYGKTNRDMFANIKAQAWWCLRDRFYK 358
Query: 425 --------------EFASL---INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
E SL I ++ + G + +ESK + +G
Sbjct: 359 TYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGIP 418
Query: 465 STDYSDGLMYTFAE 478
S + +D L+ FA
Sbjct: 419 SPNKADALVMCFAP 432
>gi|226227228|ref|YP_002761334.1| hypothetical protein GAU_1822 [Gemmatimonas aurantiaca T-27]
gi|226090419|dbj|BAH38864.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 549
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 86/470 (18%), Positives = 160/470 (34%), Gaps = 67/470 (14%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFK-------GAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
+ H + +P V + A+++G G GKT L A L+LW ++ P
Sbjct: 41 LFDAYGTHEWDGTPDPLATVLEAIAKNQWVAVASGTGTGKTFLEAVLLLWWIAVEPDSIA 100
Query: 111 ICLANSETQLKTTLWAEVSK-WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+A Q + +W EV++ W E+ +L + PW D
Sbjct: 101 TTVATKADQQEKGIWREVARHWPRFQACFPEAELTTLRIRMEPWRGDAW-------GAWG 153
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
T EE G H + ++ DE G P + ++ T N
Sbjct: 154 ITAAPKAGEESSSAVQGLHAKRLLILV-DETPGVPQPVMTALVNTAT--GEENVIAAFGN 210
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI-----------DPSFHEGIIARYGLDSD 278
P + + +I + +YG++S
Sbjct: 211 PDYQADPLGQF--AETKRVTAIRISALDHPNVVLGVERIPGAATRLSIATREDKYGVESG 268
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY----APLIMGCDIAEEGG-DNTV 333
V + V G P+Q + I L A +R P +G D+A+ D
Sbjct: 269 VYQSRVRGIAPEQSASALIHLAWCVAAADRAESVQHAALALGPKALGVDVAQSENGDKAA 328
Query: 334 VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR--PDAIIIDANNTGARTCDYLEM-- 389
V + +G + + + + ++ L+ P+ + +D GA T ++L+
Sbjct: 329 VAMGQGARLLSVIAKACPNATKLGAEVWQLMRDEGIVPEYVGVDPIGVGAATVNHLDGEC 388
Query: 390 ----LGYHVYRVLGQKRAV----------------DLEFCRNRRTELHVKMADWLEFA-- 427
G V R G +A+ D +N R ++ ++ + L
Sbjct: 389 EKENAGRSVVRCSGGAKAMEASSRAADGSAMEWLADANKFKNLRAQMWWQLREDLRNGLI 448
Query: 428 SLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+L L + L +++ + G + +ESK R + +S D +D ++Y
Sbjct: 449 ALPRDRELFRELTTVQF--DEDGGIVTLESKDDIRKRLGRSPDRADAVVY 496
>gi|261381054|ref|ZP_05985627.1| phage terminase, large subunit, PBSX family [Neisseria subflava
NJ9703]
gi|284796087|gb|EFC51434.1| phage terminase, large subunit, PBSX family [Neisseria subflava
NJ9703]
Length = 450
Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 66/436 (15%), Positives = 135/436 (30%), Gaps = 58/436 (13%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
++ GRG K+ A +++ L R G I A E+ +S
Sbjct: 20 SLRGGRGGMKSWAVATVLVELA--RKGRFRIMCA-----------RELQNSISDSVISLL 66
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + + + + + +EA
Sbjct: 67 SDTIDRAGYTQEYEVQRNRIIHLSTGSEFLFYGIKNNPTKIKSIEAI-----DICWIEEA 121
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR-FQIDTRTVE 259
D ++ + + + + T NP+ + Y+ F D ++
Sbjct: 122 ENVSDESWNILIPTIRKAGSEIWL--TWNPKNILDPTYQRFVVNPPDDMVDIVVNYTDNI 179
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAP 317
+ + D D+ R G+ S I I+ A++ +
Sbjct: 180 YLPEVLRLEAESCKARDYDLYRHIWLGEPVADSELSVIKPKWIDAAIDSHIKLGFEATGQ 239
Query: 318 LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
I+G D+A+EG D + +LR G V+ + +W D+ + +K+ ++ + D I+ D+
Sbjct: 240 RILGFDVADEGDDASATILRHGSVVIDMDEWRGQDVIYSADKVYLYGQEAKADKIVYDSI 299
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAV-------------DLEFCRNRRTELHVKMAD-- 422
GA V + + + N + + + +
Sbjct: 300 GVGAGVKAQFRRKTGKVQTIGFNAGGSVFKPEARYTDDKKNKDMFSNIKAQAWWMVRERF 359
Query: 423 -----WLEFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESKR---VKG 462
+EF LI + S N G + +ESK+ +G
Sbjct: 360 YKTWRAIEFGDTYPIDELISISGSLKDLEYLKAELSRPRVDYDNNGRVKVESKKDMAKRG 419
Query: 463 AKSTDYSDGLMYTFAE 478
S + +D L+ FA
Sbjct: 420 IPSPNRADALIMAFAP 435
>gi|319775727|ref|YP_004138215.1| phage terminase large subunit [Haemophilus influenzae F3047]
gi|319896735|ref|YP_004134928.1| phage terminase large subunit [Haemophilus influenzae F3031]
gi|317432237|emb|CBY80589.1| predicted phage terminase large subunit [Haemophilus influenzae
F3031]
gi|317450318|emb|CBY86534.1| predicted phage terminase large subunit [Haemophilus influenzae
F3047]
Length = 449
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 60/434 (13%), Positives = 135/434 (31%), Gaps = 59/434 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A L++ + R + V C + + ++ ++ + L
Sbjct: 23 GGRGSGKSWGVAQLLVEIAV-RTKVRVFCGRELQNSMSDSVIKLIADTIEDL-------- 73
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + + G + +EA
Sbjct: 74 ----GYLEDFEVQRNAIYCLKTGSEFMFYGIKNNPNKIKSLEGI-----DLVWIEEAENV 124
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
+ ++ + + + + +T NP+ + Y+ F P + +I+
Sbjct: 125 SNESWDILIPTIRKERSEIW--VTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFP 182
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIM 320
+ + D ++ R G+ I IE A++ P I+
Sbjct: 183 ETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIV 242
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A++G D+ G V+ + +W D+ + ++ ++ + I+ D+ G
Sbjct: 243 GFDVADDGVDSNANAFVHGSVVLRVDEWRGEDVIGSADRTRLNALEFGANEIVYDSIGVG 302
Query: 381 ART---CDYLEMLGYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL-- 424
A L+ + + + N + + + D
Sbjct: 303 AGVKAHYHRLDDKSIRINGFNAGGAVFEPDAEYVYGKTNRDMFANIKAQAWWCLRDRFYK 362
Query: 425 --------------EFASL---INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAK 464
E SL I ++ + G + +ESK + +G
Sbjct: 363 TYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGIP 422
Query: 465 STDYSDGLMYTFAE 478
S + +D L+ FA
Sbjct: 423 SPNKADALIMCFAP 436
>gi|303257560|ref|ZP_07343572.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
gi|302859530|gb|EFL82609.1| putative terminase B protein [Burkholderiales bacterium 1_1_47]
Length = 330
Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats.
Identities = 73/299 (24%), Positives = 115/299 (38%), Gaps = 13/299 (4%)
Query: 195 IINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI----FNKPLDDWK 249
++ DE + P + I L +R +I T L + Y+ +K DW
Sbjct: 6 VVIDEVAQIKPTLWGEVIRPALADRKGWAAFIGTPKGINLFSQLYDQALNLMSKGDPDWI 65
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
ID + + R E F + IP++ I A N+
Sbjct: 66 AMLYSVEQTHVIDEKELAALKVEMSENE--FRQEFLCDFSAAQDNGLIPIDDIRAAANKF 123
Query: 310 PCPDP--YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
APLI G D+A G D +V+ RRG V K D ++I+ + K
Sbjct: 124 YRESEYMGAPLIYGIDVARFGSDASVIFKRRGLVAFEPIVIRKFDNMALADRIAVEMAKE 183
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA 427
+PDA+ ID+ G D L + + V V +A+D E NRR E+ MA W++
Sbjct: 184 KPDAVFIDS-GAGQGVIDRLRQMRFDVVEVPFGAQAIDKEQFANRRMEMWWHMAQWIKQG 242
Query: 428 SLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRS 483
I ++Q ++ G +E+K + + +S D +D L TFA
Sbjct: 243 GAIPPDPVLQGDLGAPTYGYTPKGPKILEAKDKLKERIGRSPDLADALALTFAAPVAPK 301
>gi|154175204|ref|YP_001409090.1| Ppx/GppA family phosphatase [Campylobacter curvus 525.92]
gi|112803006|gb|EAU00350.1| phosphatase, Ppx/GppA family [Campylobacter curvus 525.92]
Length = 433
Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats.
Identities = 86/461 (18%), Positives = 156/461 (33%), Gaps = 58/461 (12%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI- 111
WQ E + I GR G T A + + G ++
Sbjct: 12 DWQREVF-------FKNKAKF------TTIEKGRRSGFTKGMANACIEWLI--EGKKILW 56
Query: 112 ---CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
AN + + E+ + + + W L + +
Sbjct: 57 VDTVTANLQRYFERYFVPELKQLPADM-----------------WKFHAQDKKLTVGEGY 99
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT---PDVINLGILGFLTE-RNANRFW 224
+ +I +EA + + I L + N+ F
Sbjct: 100 L-------DMRSAERPENIEGFGYDVVILNEAGIILKNSYLWDNAIRPMLLDYPNSRAFI 152
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVE 283
+ + DW FQI + + + +IA G +DSDV + E
Sbjct: 153 GGVPKGKNRFFDLASRGMRNEKDWVNFQISSFENPLLRKEEIDELIAELGGVDSDVVKQE 212
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
+ G+F ++ PL+ IE A + +P A I G D+A +G D +V+ +R G ++
Sbjct: 213 IYGEFLDTTTNALFPLSQIEAAFGKVRAYEPNAVQIWGLDVARDGDDESVLCVREGYHVK 272
Query: 344 HLFDWSKTDLRTTNNKISGLVE--KYRPDAIIIDANNTGARTCDYLEMLGYHVY--RVLG 399
+L + +I E + +P+AI ID+ GA T D L G
Sbjct: 273 NLEGFRIASTTELAREIYRRYEMSEKKPEAIFIDSVGVGAGTFDRLCEFGLGAICREAKA 332
Query: 400 QKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK- 458
+A + N+R E++ + + ++ H L + L+ ++ F I K
Sbjct: 333 SYKATNEAKFANKRAEMYFALKEKFHLLTMNAHEKLKKQLQMIE-FQYDRKERYLILPKD 391
Query: 459 --RVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEG 497
+ + S DY+D L TF ++ + +Y+G
Sbjct: 392 ELKKEYGTSPDYADALALTFFDDVMSARRT--EEKRQRYDG 430
>gi|85058727|ref|YP_454429.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84779247|dbj|BAE74024.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 456
Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 68/451 (15%), Positives = 135/451 (29%), Gaps = 66/451 (14%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P +K A GRG GK+ A L++ R G A E ++
Sbjct: 13 QPHRYKIA-KGGRGSGKSWAIARLLVE--IARRGTYRFLCA-----------REFQASMA 58
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+ + + + + + + + + G
Sbjct: 59 DSVIQLIADTIQREGYLKEFEIQKAYIRYLATDSLFMFYGIKNNVTKIKSLEGI-----D 113
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+EA ++ + + + W+ + L + PLDD +
Sbjct: 114 IAWVEEAEAVTKESWDILIPTIRKPGSE-IWVSFNPKNILDDTYQRFVVNPLDDICLLTV 172
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP- 312
+ D D+ G+ + I I A++
Sbjct: 173 HYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGEPVADSDLAIIKPLWIAAAVDAHITLG 232
Query: 313 -DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
+P +G D+A+EG D+ ++L G V+ HL W+K D+ + +++ E D
Sbjct: 233 FEPAGKKRIGFDVADEGEDSNALILSHGSVVMHLETWNKGDVIQSADRVKNYAESVIADE 292
Query: 372 IIIDANNTGARTCDYLEML------GYHVYRVLGQKRA------VDLEFCRNRRTELHVK 419
II D+ GA L + G++ + + A + + N + +
Sbjct: 293 IIFDSIGVGAGVKARLRRVSRITASGFNAGGGVFKPDAKYVDGKTNKDMFVNLKAQAWWG 352
Query: 420 MADWLEF--------ASLINHSGLI---------------------QNLKSLKSFIVPNT 450
+ + + S + + S N
Sbjct: 353 VRERFYNTWHAVEYIKHHPDDSDFVKGLRDDQLISLSSRLSSLDYLKAELSRPWVDYDNN 412
Query: 451 GELAIESK---RVKGAKSTDYSDGLMYTFAE 478
G + +ESK + +G S + +D L+ FA
Sbjct: 413 GRVKVESKKDMKKRGIPSPNRADALIMAFAP 443
>gi|212703250|ref|ZP_03311378.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
gi|212673294|gb|EEB33777.1| hypothetical protein DESPIG_01292 [Desulfovibrio piger ATCC 29098]
Length = 330
Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats.
Identities = 65/301 (21%), Positives = 112/301 (37%), Gaps = 18/301 (5%)
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDT 255
A P+V + L +R + +I T L + Y+ W
Sbjct: 5 AQMKPEVWGEVVQPALADRRGSAVFIGTPKGANLFAELYQRGMAAQAQGDAAWCALSYPV 64
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP- 314
+ + + E + + R E+ F D IPL + EA R+ D
Sbjct: 65 TSTDVLPAEDVERLRRELSD--NAFRQEMLCDFTASSDDILIPLPDVLEAEARQLAWDDV 122
Query: 315 -YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
P+I+G D+A G D++V+V R+G ++ D ++++ + + RP A+
Sbjct: 123 GGMPVILGVDVARFGADSSVIVRRQGLKVDGPVVMRGLDNMQLADRVAAAIMENRPHAVF 182
Query: 374 IDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS 433
IDA G D L LG+ V V + + NRR+E+ + WL+ +
Sbjct: 183 IDA-GQGQGVIDRLRQLGHEVIEVPFGGKPLQEGRFANRRSEMWYGLRQWLKSGGKLPDE 241
Query: 434 -----GLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDM 485
L L + + G + +E K + + S D +D L TFA +
Sbjct: 242 GDDVPRLRAELSA-PLYWYDAAGRMVLEPKDKIKERLGASPDIADALALTFAAPVALPEP 300
Query: 486 D 486
Sbjct: 301 G 301
>gi|283956317|ref|ZP_06373797.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
gi|283792037|gb|EFC30826.1| terminase B protein, putative [Campylobacter jejuni subsp. jejuni
1336]
Length = 430
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 80/421 (19%), Positives = 145/421 (34%), Gaps = 40/421 (9%)
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132
+ ++ GR +G T +A V+ + G +V+ + + L+ + L
Sbjct: 18 DDKNPRFITVAKGRRLGFTRGSAKFVIENLLL--GQNVLWVDTIQANLQNYYELYFTPEL 75
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
LP K ++ +
Sbjct: 76 KNLP-KDFYSWSVQDKKL-------------------IINGAVLHMRSAERSENIEGFGY 115
Query: 193 MAIINDEASGTPDV------INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
+I +EA I L + N I+ P+ + + + D
Sbjct: 116 DLVILNEAGIILKGSKGEYLWYNAIRPMLLD-NPKSRAIIGGVPKGKNLFYELCRKELSD 174
Query: 247 D-WKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
WK FQ + + + +I G DS+V + E+ G+F L IE
Sbjct: 175 KNWKHFQFSSYDNPFLKEEQIKELIEEVGGEDSEVVKQEIYGEFIDSSSAELFALTEIEN 234
Query: 305 ALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A+++ I G D+A G D +V+ R+G +++ + +S+ N+I
Sbjct: 235 AMSKNSFSIEKMQGENIWGLDVARYGDDKSVLAKRKGFIVDEIKKYSQLGTMELANRILA 294
Query: 363 LVE--KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ +P I ID G D L G V+ A E N+R +++
Sbjct: 295 EYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSANSATSNE-YLNKRAQMYFTF 353
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
A L+ L+ L ++++ ++ + + G L I SK + KS D SD + TF
Sbjct: 354 AKNLKHMELVKDEELKKDMRMIE-YEYSDKGLLKIVSKEQLKKNYGKSPDVSDAVALTFF 412
Query: 478 E 478
E
Sbjct: 413 E 413
>gi|16273317|ref|NP_439561.1| terminase large subunit-like protein [Haemophilus influenzae Rd
KW20]
gi|1175785|sp|P44184|Y1410_HAEIN RecName: Full=Uncharacterized protein HI_1410
gi|1574247|gb|AAC23058.1| predicted coding region HI1410 [Haemophilus influenzae Rd KW20]
Length = 394
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 61/401 (15%), Positives = 128/401 (31%), Gaps = 46/401 (11%)
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
++ E+ K +S + + + A + S+ + +
Sbjct: 1 MFREIQKSISDSVIQMLADQIEMLSLQAFFDVQKTQIIGQNGSRFTFA-GLKTNITSIKS 59
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN- 242
G + +E ++ + E + I++ NP+ + Y+ F
Sbjct: 60 MTGI-----DVVWVEEGENVSKESWDILIPTIREDGSQ--IIVSFNPKNILDDTYQRFVI 112
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
P + K ++ + E + D ++ R G+ + I I
Sbjct: 113 HPPERCKSVLVNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWI 172
Query: 303 EEALNREPCP--DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
E A++ +G D+A+EG D+ G V+ + W D+ + N+
Sbjct: 173 EYAVDAHLKLGFTAKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRT 232
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEML--GYHVYRVLGQKRA-----------VDLE 407
+ K++ D II D+ GA + + L V + +
Sbjct: 233 NQSAVKFKADLIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQD 292
Query: 408 FCRNRRTELHVKMADWL-------EFASLINHSGLI------------QNLKSLKSFIVP 448
N + + + D ++ + LI + S
Sbjct: 293 MFSNIKAQSWWALRDRFYKTYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYD 352
Query: 449 NTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMD 486
N G + +ESK + +G S + +D L+ +A P+S +D
Sbjct: 353 NNGRVKVESKKDMKKRGIPSPNMADALVMCYAPTKPKSLLD 393
>gi|216906085|ref|YP_002333619.1| terminase [Abalone shriveling syndrome-associated virus]
gi|216263178|gb|ACJ72002.1| terminase [Abalone shriveling syndrome-associated virus]
Length = 507
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 91/447 (20%), Positives = 163/447 (36%), Gaps = 28/447 (6%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQLE ++ + + + V A+S G G GKT L+ L +W PG
Sbjct: 49 FDWQLEIVDYIAKFFRKNSD-EKHFVCAIAVSGGNGTGKTKLSKALNIWRFCCHPGSRQF 107
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
L NSE Q K T + + + +S L + A +YS + + +
Sbjct: 108 ILTNSERQTKRTGFTMLVRRISKL-----LSCIAALESSAYYYSPAVADKPEVRTNDMWD 162
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ G H+ M DE++ D + + T+ F +
Sbjct: 163 VTYLLQSSTEAALSGLHHP-MMTFSFDESTYFNDHVWQALENMWTQGQVLCFCTGNPSHD 221
Query: 232 RLSGK---FYEIFNKPLDDWKRFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCG 286
+ F + +K W + + + + I YG V G
Sbjct: 222 NNNYFARLFNKSLHKKDSLWLTRCVSLLELPLKYRNDARARYIEEHYGKTHPRYIASVLG 281
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPD-PYAPLIMGCD--IAEEGGDNTVVVLRRGPVIE 343
QFP+++ + + I EA+ RE + + P+IMG D I+ G + + +R G +
Sbjct: 282 QFPKKNTCNPFDITAISEAMEREVREEFIHHPVIMGIDVSISANNGSASAICVREGTAVR 341
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM-----LGYHVYRVL 398
L ++ K+ L+++ +P +++DAN G + L VY V
Sbjct: 342 VLREYRCH-YTEFRIKLLELLQEIKPTIVVVDANGVGFGLYEELHRTLPETSNVRVYGVR 400
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEF--ASLINHSGLIQNLKSLKSFIVPNTGELAIE 456
A ++ +EL K ++W S+ + + L SL +G++ +
Sbjct: 401 AHAEAFLKSEYADKMSELAKKSSEWFNNELVSIPKNYQFLNALTSLSF--ADASGKIKLI 458
Query: 457 SK---RVKGAKSTDYSDGLMYTFAENP 480
K + K S D +D TF +
Sbjct: 459 GKTDAKKKVDLSMDMADAFFLTFLDGV 485
>gi|315929403|gb|EFV08605.1| phosphatase, Ppx/GppA family [Campylobacter jejuni subsp. jejuni
305]
Length = 430
Score = 190 bits (482), Expect = 5e-46, Method: Composition-based stats.
Identities = 81/421 (19%), Positives = 142/421 (33%), Gaps = 40/421 (9%)
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132
+ ++ GR +G T +A V+ + G +V+ + + L+ + L
Sbjct: 18 DDKNPRFITVAKGRRLGFTRGSAKFVIENLLL--GQNVLWVDTIQANLQNYYELYFTPEL 75
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
LP K ++ +
Sbjct: 76 KNLP-KDFYSWSVQDKKL-------------------IINGAVLHMRSAERSENIEGFGY 115
Query: 193 MAIINDEASGTPDV------INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
+I +EA I L + N I+ P+ + + + D
Sbjct: 116 DLVILNEAGIILKGSKGEYLWYNAIRPMLLD-NPKSRAIIGGVPKGKNLFYELCRKELSD 174
Query: 247 D-WKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
WK FQ + + + +I G S+V + E+ G+F L+ IE
Sbjct: 175 KNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSSAELFSLSEIEN 234
Query: 305 ALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A+++ I G D+A G D + + R+G VI + +S+ NKI
Sbjct: 235 AMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQLGTIELANKILA 294
Query: 363 LVE--KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ +P I ID G D L G V+ A E N+R +++
Sbjct: 295 EYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSANSATSNE-YLNKRAQMYFTF 353
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
A L+ L L ++++ ++ + + G L I SK + KS D SD + TF
Sbjct: 354 AKNLKHMELFKDEELKKDMRMIE-YEYSDKGLLKIVSKEYLKKNYGKSPDVSDAVALTFF 412
Query: 478 E 478
E
Sbjct: 413 E 413
>gi|284162607|ref|YP_003401230.1| hypothetical protein Arcpr_1511 [Archaeoglobus profundus DSM 5631]
gi|284012604|gb|ADB58557.1| protein of unknown function DUF264 [Archaeoglobus profundus DSM
5631]
Length = 435
Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats.
Identities = 79/478 (16%), Positives = 157/478 (32%), Gaps = 76/478 (15%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNS 69
+T+++L + SD F F WG Q + +
Sbjct: 2 KTDKELKKKVLSD-----PVTFAKVFLDWGAHPA-----------QAQILRD-------- 37
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
+ AGR GKT A ++ T PG +A S Q ++ ++
Sbjct: 38 --RHQF----ITVVAGRRFGKTECMAVSAIYYALTNPGSIQFVIAPSYDQ-SNIMFGQIV 90
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
++LS ++ P++ + I ++
Sbjct: 91 QFLSKSI----LGCMIRRIYKTPFHHIIFKNDSVIHAR------------SASKPEFLRG 134
Query: 190 TYGMAIINDEASGTPDV-INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL-DD 247
II DEA+ PD I+ I L + N + I T + Y P D
Sbjct: 135 HKAHRIILDEAAFIPDDVISNIIEPMLADYNGSWIKIGTPFGKNHFYDTYLKGQSPDFPD 194
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
+ ++ + I F E YG +S + R E +F + F I++ ++
Sbjct: 195 YSSYRFPSTVNPHISHEFIEKKKREYGENSIIFRTEYLAEFVEDQNAVFR-WADIQKNVD 253
Query: 308 REPCPDPYAP-----LIMGCDIAEEGGDNTVVVLR---RGPVIEHLFDWSKTDLRTTNNK 359
A ++GCD+A+ +VVL + + H +++ +
Sbjct: 254 NSIELIDSAENVSKQYVIGCDLAKYQDYTVIVVLDVTEKPYKLVHFERFNRRPYAEVIMR 313
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
+ L ++ ++ID+ G + L+ +G + ++ + +L +
Sbjct: 314 LKELYRRFNYAKVLIDSTGVGDPVLEDLQDVG--AEGYVFTPKS---------KVQLIQR 362
Query: 420 MADWLEFA--SLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ LE L++ L+ + + + TG + +E+ + DY L
Sbjct: 363 LQAALENGEIRYPYIEELVKELQFFE-YQLTRTG-IKMEA---RQGFHDDYVIALALA 415
>gi|153951273|ref|YP_001397540.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|153951467|ref|YP_001398214.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938719|gb|ABS43460.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
gi|152938913|gb|ABS43654.1| putative terminase B protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 430
Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 83/428 (19%), Positives = 143/428 (33%), Gaps = 40/428 (9%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ ++ GR +G T V+ + G +V+ + + L+
Sbjct: 11 RAQLKVFDDKNPRFITVAKGRRLGFTRGCVKYVIENLI--EGKNVLWVDTIQANLQNYYE 68
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+ L LP K ++ +
Sbjct: 69 LYFTPELKNLP-KDFYSWSVQDKKL-------------------IINGAVLHMRSAERSE 108
Query: 186 GHHNTYGMAIINDEASGTPDV------INLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
+I +EA I L + N I+ P+ + +
Sbjct: 109 NIEGFAYDLVILNEAGIILKDSKGGYLWYNSIRPMLLD-NPKSRAIIGGVPKGKNLFYEL 167
Query: 240 IFNKPLDD-WKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFI 297
+ D WK FQ + + + +I G SDV R E+ G+F
Sbjct: 168 CRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGESSDVVRQEIYGEFIDSSSAELF 227
Query: 298 PLNIIEEALNREPCPDPY--APLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT 355
L+ IE A+++ I G D+A G D +V+ R+G VI+ L +S+
Sbjct: 228 SLSGIENAMSKNSFSTQKMQGENIWGLDVARYGDDKSVLAKRKGFVIDELKKYSQLGTIE 287
Query: 356 TNNKISGLVE--KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
NKI + + +P I ID G D L G V+ A + N+R
Sbjct: 288 LANKILAEYKQSEEKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSANSATSNQ-YLNKR 346
Query: 414 TELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSD 470
+++ A L+ L+ L +++ ++ + + G L I SK + KS D SD
Sbjct: 347 AQMYFTFAKNLKHMELVKDEELKNDMRRIE-YEYSDKGLLKIVSKEQLKKNYGKSPDLSD 405
Query: 471 GLMYTFAE 478
+ TF E
Sbjct: 406 AVALTFFE 413
>gi|260868683|ref|YP_003235085.1| putative terminase large subunit [Escherichia coli O111:H- str.
11128]
gi|293446697|ref|ZP_06663119.1| phage terminase large subunit [Escherichia coli B088]
gi|257765039|dbj|BAI36534.1| putative terminase large subunit [Escherichia coli O111:H- str.
11128]
gi|291323527|gb|EFE62955.1| phage terminase large subunit [Escherichia coli B088]
gi|323177130|gb|EFZ62720.1| phage terminase, large subunit, PBSX family [Escherichia coli 1180]
Length = 471
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 58/463 (12%), Positives = 124/463 (26%), Gaps = 76/463 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L + L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
G+L +E K+ G S + +D LM + D+
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYSS 463
>gi|57237579|ref|YP_178593.1| terminase B protein, putative [Campylobacter jejuni RM1221]
gi|57166383|gb|AAW35162.1| terminase B protein, putative [Campylobacter jejuni RM1221]
Length = 430
Score = 187 bits (474), Expect = 4e-45, Method: Composition-based stats.
Identities = 80/421 (19%), Positives = 142/421 (33%), Gaps = 40/421 (9%)
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132
+ ++ GR +G T +A V+ + G +V+ + + L+ + L
Sbjct: 18 DDKNPRFITVAKGRRLGFTRGSAKFVIENLLL--GQNVLWVDTIQANLQNYYELYFTPEL 75
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
LP K ++ +
Sbjct: 76 KNLP-KDFYSWSVQDKKL-------------------IINGAVLHMRSAERSENIEGFGY 115
Query: 193 MAIINDEASGTPDV------INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
+I +EA I L + N I+ P+ + + + D
Sbjct: 116 DLVILNEAGIILKGSKGEYLWYNAIRPMLLD-NPKSRAIIGGVPKGKNLFYELCRKELSD 174
Query: 247 D-WKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
WK FQ + + + +I G S+V + E+ G+F L+ IE
Sbjct: 175 KNWKHFQFSSYDNPFLKEEQIKELIEEVGGEGSEVVKQEIYGEFIDSSSAELFSLSEIEN 234
Query: 305 ALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
A+++ I G D+A G D + + R+G VI + +S+ NKI
Sbjct: 235 AMSKNSFSIEKMQGENIWGLDVARYGDDKSALAKRKGFVIYEIKKYSQLGTIELANKILA 294
Query: 363 LVE--KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ +P I ID G D L G V+ A E N+R +++
Sbjct: 295 EYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSANSATSNE-YLNKRAQMYFTF 353
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
L+ L+ L ++++ ++ + + G L I SK + KS D SD + TF
Sbjct: 354 TKNLKHMELVKDEELKKDMRMIE-YEYSDKGLLKIVSKEQLKKNYGKSPDVSDAVALTFF 412
Query: 478 E 478
E
Sbjct: 413 E 413
>gi|324019922|gb|EGB89141.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
117-3]
Length = 471
Score = 187 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 59/463 (12%), Positives = 124/463 (26%), Gaps = 76/463 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKCIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWL-----------------------EFASLINHSGLIQNLKSLKSFIVPNT 450
+ + +AD L E L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVYGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
G+L +E K+ G S + +D LM + D+
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYSS 463
>gi|157159763|ref|YP_001457081.1| PBSX family phage terminase large subunit [Escherichia coli HS]
gi|300935792|ref|ZP_07150755.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
21-1]
gi|157065443|gb|ABV04698.1| phage terminase, large subunit, pbsx family [Escherichia coli HS]
gi|300459025|gb|EFK22518.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
21-1]
Length = 471
Score = 187 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 58/463 (12%), Positives = 124/463 (26%), Gaps = 76/463 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINDGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L + L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
G+L +E K+ G S + +D LM + D+
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYSS 463
>gi|294492319|gb|ADE91075.1| phage terminase, large subunit, PBSX family [Escherichia coli
IHE3034]
Length = 471
Score = 187 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 59/463 (12%), Positives = 124/463 (26%), Gaps = 76/463 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L N L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPNDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
G+L +E K+ G S + +D LM + D+
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYSS 463
>gi|237704849|ref|ZP_04535330.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
gi|226901215|gb|EEH87474.1| terminase large subunit [Escherichia sp. 3_2_53FAA]
gi|315288241|gb|EFU47640.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
110-3]
Length = 471
Score = 187 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 59/463 (12%), Positives = 124/463 (26%), Gaps = 76/463 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWL-----------------------EFASLINHSGLIQNLKSLKSFIVPNT 450
+ + +AD L E L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVYGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
G+L +E K+ G S + +D LM + D+
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYSS 463
>gi|91211665|ref|YP_541651.1| terminase large subunit [Escherichia coli UTI89]
gi|117624554|ref|YP_853467.1| phage terminase large subunit [Escherichia coli APEC O1]
gi|218559279|ref|YP_002392192.1| Terminase large subunit [Escherichia coli S88]
gi|91073239|gb|ABE08120.1| terminase large subunit [Escherichia coli UTI89]
gi|115513678|gb|ABJ01753.1| phage terminase large subunit [Escherichia coli APEC O1]
gi|148566126|gb|ABQ88401.1| phage terminase large subunit [Enterobacteria phage CUS-3]
gi|218366048|emb|CAR03793.1| Terminase large subunit [Escherichia coli S88]
gi|307626097|gb|ADN70401.1| terminase large subunit [Escherichia coli UM146]
gi|323948780|gb|EGB44679.1| phage terminase large subunit [Escherichia coli H252]
Length = 471
Score = 187 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 58/463 (12%), Positives = 124/463 (26%), Gaps = 76/463 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L + L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
G+L +E K+ G S + +D LM + D+
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYSS 463
>gi|168260952|ref|ZP_02682925.1| phage terminase, large subunit, pbsx family [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|205349913|gb|EDZ36544.1| phage terminase, large subunit, pbsx family [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
Length = 471
Score = 187 bits (473), Expect = 6e-45, Method: Composition-based stats.
Identities = 58/463 (12%), Positives = 124/463 (26%), Gaps = 76/463 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKTFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEVFSGKKITATMFKGSESPFDEDALYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L + L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
G+L +E K+ G S + +D LM + D+
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESAAQPDYSS 463
>gi|225155389|ref|ZP_03723881.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
gi|224803845|gb|EEG22076.1| hypothetical protein ObacDRAFT_9437 [Opitutaceae bacterium TAV2]
Length = 479
Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 93/466 (19%), Positives = 158/466 (33%), Gaps = 55/466 (11%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW-LVLWLMSTRPGISVI 111
SWQ + M V A + G GKT++ L L L+ PG +V+
Sbjct: 37 SWQAKIMASV-----------WSGKPTVA-ATPNGAGKTSVIIVALALTLLHEFPGATVV 84
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + + ++A ++ + W +D
Sbjct: 85 LTSATYRAVCDQIFASLAVHQAKFSAWKW--------------NDTEINDGQGGRIIGFA 130
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
R E + G + II DEA D I + +R + S+
Sbjct: 131 TDRGGRFEGFHAYPG----RPLLIILDEAKSIADDIFVAA-----DRCQPTMLLYISSWG 181
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
L G+F++ F+ D + +FQ I P F E + A+YG DSD+ R + GQ P+
Sbjct: 182 GLFGRFHDAFS--QDRFAQFQAGIADCPHITPEFIEAMRAQYGEDSDIYRSMILGQRPKG 239
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW-SK 350
+ F+ + E P + CD AE D V+ R G + + W
Sbjct: 240 NETGFVVPFVDYERCESNPPVWQEGTKQVFCDFAETS-DECVIAKRDGNRLSIVDAWIPD 298
Query: 351 TDLRTTNNKISGLVEKYRPDAIII--DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
+ ++ G + + + + +I DA+ TG L + G + V +D +
Sbjct: 299 GNTAGITDRFEGHLRRLQNEGFVIRGDADGTGHGYITALSLRGIKISGVKNNDAPMDNHY 358
Query: 409 CRNRRTELHVKMADWLEF--ASLINHSGLIQNLKSL---------KSFIVPNTGELAIES 457
N E A ++ L + L + L S K G L +
Sbjct: 359 F-NLAAEHWWTFAKKVKSNFWILPHDEVLKRQLCSREEVYRKVGDKKVYGREDGRLQLMP 417
Query: 458 KRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEGVDLLIE 503
K KS D +D L+ + + + +D+L E
Sbjct: 418 KSRLSTKSPDRADALVGAAFDYASFAAFTLMGGNDMR-SHLDMLNE 462
>gi|145638997|ref|ZP_01794605.1| terminase large subunit-like protein [Haemophilus influenzae
PittII]
gi|145271969|gb|EDK11878.1| terminase large subunit-like protein [Haemophilus influenzae
PittII]
Length = 379
Score = 182 bits (462), Expect = 9e-44, Method: Composition-based stats.
Identities = 58/378 (15%), Positives = 121/378 (32%), Gaps = 45/378 (11%)
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
L ++ +G + ++ + + G + +E
Sbjct: 8 MLGLQDFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGI-----DVVWVEEGENVSKE 62
Query: 207 INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGIDPSF 265
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 63 SWDILIPTIREDGSQ--IIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFPKEL 120
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIMGCD 323
E + D ++ R G+ + I IE A++ +G D
Sbjct: 121 MEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKVGFD 180
Query: 324 IAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
+A+EG D G V+ + W D+ + N+ + K++ D II D+ GA
Sbjct: 181 VADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVGAGV 240
Query: 384 CDYLEML--GYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL------ 424
+ + L V + + N + + + D
Sbjct: 241 KAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKNQDMFSNIKAQSWWALRDRFYKTYRA 300
Query: 425 -EFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESK---RVKGAKSTDY 468
++ + LI + S N G + +ESK + +G S +
Sbjct: 301 VKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPSPNM 360
Query: 469 SDGLMYTFAENPPRSDMD 486
+D L+ +A P+S +D
Sbjct: 361 ADALVMCYAPTKPKSLLD 378
>gi|226940459|ref|YP_002795533.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715386|gb|ACO74524.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 272
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/276 (25%), Positives = 108/276 (39%), Gaps = 16/276 (5%)
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ + W QID+RTVEG + YG +SD +V V G FP FI
Sbjct: 5 KCGRRFRHRWVARQIDSRTVEGTNKEQIAKWAEDYGEESDFFKVRVRGMFPSMSARQFIS 64
Query: 299 LNIIEEALNREPCPDPY--APLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
+ A R P+ Y AP I+ D A EG D V+ LR+G L +K D
Sbjct: 65 ETDVSAAYGRALRPEQYQYAPKILTVDPAWEGDDEFVIGLRQGLSFRVLHTMAKNDNDLV 124
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
++ E + G + +G V ++D C N+R E+
Sbjct: 125 AAQVIARYEDEEGADAVFVDAGFGTGIVSAGKSMGRDWTLVWFAGNSMDAG-CLNKRAEM 183
Query: 417 HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRV---KGAKSTDYSDGLM 473
DWL+ I ++++ + G++ IESK+ +G S + +D L+
Sbjct: 184 WRDARDWLKSGGAIPDDPVLRDELQAPEIVPRLDGKIQIESKKEMKARGVPSPNRADALI 243
Query: 474 YTFAENPPRSDMDFGRCPSYQYEGVDLLIERRFEYD 509
+FA R D + + ERR EYD
Sbjct: 244 LSFAYPVTRRDP---------LDALRNHSERR-EYD 269
>gi|307251380|ref|ZP_07533296.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306856621|gb|EFM88761.1| hypothetical protein appser4_21360 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 384
Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats.
Identities = 56/370 (15%), Positives = 118/370 (31%), Gaps = 46/370 (12%)
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
L+ P++ +G + ++ + + G + +E
Sbjct: 9 LNLKPFFEVQKTQIIGRNGSRFTFAGLKTNITSIKSMTGI-----DVVWVEEGENVSKES 63
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGIDPSFH 266
++ + E + I++ NP+ L Y+ F P + ++ +
Sbjct: 64 WDVLIPTIREDGSQ--IIVSFNPKNLLDDTYQRFVINPPERCCSVLVNWQDNPYFPKELM 121
Query: 267 EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIMGCDI 324
E + D ++ R GQ + I IE+A++ ++G D+
Sbjct: 122 EDMKQMKERDFELYRHVYEGQPVADSDLAIIKPLWIEKAVDAHKKLGFTASGRKVVGFDV 181
Query: 325 AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
A+EG D G V+ + +W D+ + ++ + D I+ D+ GA
Sbjct: 182 ADEGIDANANCFAHGSVVLQVDEWRGDDVIQSAHRTHTNAVMWGVDEIVFDSIGVGAGVK 241
Query: 385 DYLEMLG-YHVYRVLGQKRA-------------VDLEFCRNRRTELHVKMAD-------W 423
+ + A + E N + + + D
Sbjct: 242 AEYRRMDTKRILCSGFNAGASVFEPDEYYTQDKTNGEMFANIKAQAWWLLRDRFYKTYRA 301
Query: 424 LEFASLINHSGLI------------QNLKSLKSFIVPNTGELAIESKR---VKGAKSTDY 468
+EF + +I + S N G++ +ESK+ +G S +
Sbjct: 302 IEFGDVYPVDEMISLSSDIKDLEYLKAELSRPRVDHDNNGKVRVESKKDMRKRGIPSPNK 361
Query: 469 SDGLMYTFAE 478
+D L+ FA
Sbjct: 362 ADSLVMCFAP 371
>gi|13559866|ref|NP_112076.1| terminase large subunit [Enterobacteria phage HK620]
gi|13517602|gb|AAK28891.1|AF335538_43 terminase large subunit [Salmonella phage HK620]
Length = 470
Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats.
Identities = 57/460 (12%), Positives = 122/460 (26%), Gaps = 76/460 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L + L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGENILEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
G+L +E K+ G S + +D LM +
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCPALAREET 460
>gi|300897414|ref|ZP_07115839.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
198-1]
gi|300358826|gb|EFJ74696.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
198-1]
Length = 470
Score = 180 bits (455), Expect = 7e-43, Method: Composition-based stats.
Identities = 57/453 (12%), Positives = 121/453 (26%), Gaps = 76/453 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGSDHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L + L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAEN 479
G+L +E K+ G S + +D LM
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCP 453
>gi|260856407|ref|YP_003230298.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
gi|257755056|dbj|BAI26558.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
Length = 470
Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats.
Identities = 57/453 (12%), Positives = 121/453 (26%), Gaps = 76/453 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHTKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDL-----------------------EFCRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDGPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L + L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAEN 479
G+L +E K+ G S + +D LM
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCP 453
>gi|41057280|ref|NP_958178.1| gene 2 protein [Enterobacteria phage Sf6]
gi|191165541|ref|ZP_03027382.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
gi|218695968|ref|YP_002403635.1| Terminase large subunit [Escherichia coli 55989]
gi|331678314|ref|ZP_08378989.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
gi|33334159|gb|AAQ12192.1| gene 2 protein [Shigella phage Sf6]
gi|190904464|gb|EDV64172.1| phage terminase, large subunit, pbsx family [Escherichia coli B7A]
gi|218352700|emb|CAU98482.1| Terminase large subunit [Escherichia coli 55989]
gi|324114096|gb|EGC08069.1| phage terminase large subunit [Escherichia fergusonii B253]
gi|331074774|gb|EGI46094.1| phage terminase, large subunit, PBSX family [Escherichia coli H591]
Length = 470
Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats.
Identities = 57/453 (12%), Positives = 121/453 (26%), Gaps = 76/453 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L + L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAEN 479
G+L +E K+ G S + +D LM
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCP 453
>gi|323936486|gb|EGB32774.1| phage terminase large [Escherichia coli E1520]
Length = 470
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 57/453 (12%), Positives = 121/453 (26%), Gaps = 76/453 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDL-----------------------EFCRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDGPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L + L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIDEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAEN 479
G+L +E K+ G S + +D LM
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCP 453
>gi|325497784|gb|EGC95643.1| gene 2 protein [Escherichia fergusonii ECD227]
Length = 470
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 58/453 (12%), Positives = 121/453 (26%), Gaps = 76/453 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWL-----------------------EFASLINHSGLIQNLKSLKSFIVPNT 450
+ + +AD L E L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVYGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAEN 479
G+L +E K+ G S + +D LM
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCP 453
>gi|222032743|emb|CAP75482.1| Terminase large subunit [Escherichia coli LF82]
Length = 470
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 56/453 (12%), Positives = 121/453 (26%), Gaps = 76/453 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMAD-------WLEFASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD + + L L ++ N
Sbjct: 362 AQFYYALADSLYLTYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAEN 479
G+L +E K+ G S + +D LM
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCP 453
>gi|168239626|ref|ZP_02664684.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197287704|gb|EDY27095.1| phage terminase, large subunit, pbsx family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 470
Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats.
Identities = 57/453 (12%), Positives = 121/453 (26%), Gaps = 76/453 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYAAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILVPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L + L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEVIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAEN 479
G+L +E K+ G S + +D LM
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCP 453
>gi|298381518|ref|ZP_06991117.1| phage terminase large subunit [Escherichia coli FVEC1302]
gi|298278960|gb|EFI20474.1| phage terminase large subunit [Escherichia coli FVEC1302]
Length = 470
Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats.
Identities = 56/453 (12%), Positives = 120/453 (26%), Gaps = 76/453 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + +E A + ++
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIFKREWLEAATDAHKKLGWKAKGAVVS 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ G D R G V++ + + D+ + + L + D + D + G
Sbjct: 242 AHDPSDTGPDAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGSDHYLWDGDGVG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A T + G + D + RN+R
Sbjct: 302 AGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQAGAWADEVVQGDNVRTIGDVFRNKR 361
Query: 414 TELHVKMADWLE-------FASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L + L L ++ N
Sbjct: 362 AQFYYALADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR-KFNNN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAEN 479
G+L +E K+ G S + +D LM
Sbjct: 421 GKLELMTKVEMKQKLGIPSPNLADALMMCMHCP 453
>gi|227113418|ref|ZP_03827074.1| Terminase large subunit [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 472
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 58/479 (12%), Positives = 125/479 (26%), Gaps = 78/479 (16%)
Query: 68 NSVNNPNPEVFKGAIS-AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
N P + + ++ GRG K+ A L+ A ++
Sbjct: 5 NPNFRPFIKAHRYKVAKGGRGSSKSWSIARLI-------------VEAARRQSIRILCAR 51
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
E+ +S + + + A + + + + + + G
Sbjct: 52 ELQNSISDSVIRLLEDTIEREGYTAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEG 111
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
+EA ++ + + + W+ + L + P D
Sbjct: 112 V-----DICWVEEAEAVTKESWDILIPTIRKPGSE-IWVSFNPKNILDDTYQRFVVTPPD 165
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
D ++ + + + R G+ + I +E A
Sbjct: 166 DICLLTVNYTDNPHFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASEMAIIKREWLEAAT 225
Query: 307 NREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-TDLRTTNNKISGL 363
+ ++ D ++ G D+ +R G V++ + D+ + + L
Sbjct: 226 DAHIKLGWKAKGAIVAAHDPSDTGPDDKGYAMRHGSVVKRIASPPAPLDVNDGADWATDL 285
Query: 364 VEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF----------- 408
D + D + GA D V G + D +
Sbjct: 286 AIADGADHFLFDGDGLGAGLRRQVTDSFTGKKVTVTMFKGSESPFDEDSPYQAGAWFDEV 345
Query: 409 ------------CRNRRTELHVKMAD-------WLEFASL--INH--------------S 433
RN+R + + +AD + +
Sbjct: 346 VDGDNIRTIGDVFRNKRAQFYYTLADRLYLTYRAIVHGEYANPDDMLSFDKEAIGDQMLE 405
Query: 434 GLIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L L ++ G+L +E K G S + +D LM + D+
Sbjct: 406 KLFAELTQIQR-KFNGNGKLELMTKVEMKSKLGIPSPNLADSLMMCMHCPSVAIEPDYS 463
>gi|168704975|ref|ZP_02737252.1| hypothetical protein GobsU_35915 [Gemmata obscuriglobus UQM 2246]
Length = 519
Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats.
Identities = 83/505 (16%), Positives = 149/505 (29%), Gaps = 92/505 (18%)
Query: 46 EGFSAPRSWQLEFME-VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
+ + P + + ++ A + ++ + A +GK+ L LV W T
Sbjct: 29 KYRTDPAGYARDILKVKWWAKQVEIAEALCKPPYRVLVKASHSVGKSHLAGGLVNWWYDT 88
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
R + A ++ Q+K LW EV + P + L
Sbjct: 89 RFPGVCLTTAPTDRQVKDVLWKEVRRQRRKRP----------------GFVGPKMPRLES 132
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
D H+ ++ +F G H + +I DEA G + A W
Sbjct: 133 DPTHF---AHGFTARDATSFQGQH-EASILLIFDEAVGIDGDFWEAAESMC--QGAEYGW 186
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID-------------------PSF 265
+ NP + + Y + + W I I
Sbjct: 187 LAIFNPTDTTSRAY-LEEQAGSRWTVIDIPATEHPNIAAELVARPPEYPSAVRLNWLRDR 245
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA----------------LNRE 309
E R D T ++ P + P + + + R
Sbjct: 246 LEQWAERI-EPGDATPTDIQFPNPDGSPQWWRPGPLADARLLARWPASGCGVWSDPVWRS 304
Query: 310 PCPDPYAPL------IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL 363
P+ +GCD+A G D T + +R G V H + D + T ++ +
Sbjct: 305 VERAAPDPVPERWLPQIGCDVARFGEDWTELHVRCGNVSLHHEAHNGWDTKRTTERLKQM 364
Query: 364 VEKYRPDAIIIDANNT---------------GARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
++ A + G + G++ V A D E
Sbjct: 365 CGEWAQWATQLRDRGADPIDPRRIPVKVDDDGVGGGVTDQRGGFNFQAVSSASNANDKEA 424
Query: 409 CRNRRTELHVKMADWLEFASLINH-------SGLIQNLKSLKSFIVPNTGELAIESK--- 458
NRR+EL +AD + L L + + ++ + G +E K
Sbjct: 425 YPNRRSELWFTVADRAKRGELFLSNLPAHVRQELKRQAMA-PTYKLDAAGRRVVEPKEDT 483
Query: 459 RVKGAKSTDYSDGLMYTFAENPPRS 483
+ + +S D D + + E R
Sbjct: 484 KERIGRSPDGMDAVNLAYYEPSGRG 508
>gi|186682890|ref|YP_001866086.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
gi|186465342|gb|ACC81143.1| hypothetical protein Npun_R2589 [Nostoc punctiforme PCC 73102]
Length = 543
Score = 176 bits (446), Expect = 7e-42, Method: Composition-based stats.
Identities = 83/470 (17%), Positives = 147/470 (31%), Gaps = 92/470 (19%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ A G GK+ + + LV++ + G I A SE Q+K LWAE+ K L K
Sbjct: 64 VKAAHGTGKSFIASLLVIYFLFC-VGGVAITTAPSEDQVKWILWAELRKIHGLHKTKLGG 122
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ L + S+ T + ++F G H + I DEA
Sbjct: 123 RCDIMQL---------------LFSETVYAFGITSRDYSENSFQGQHRQKQLL-IEDEAD 166
Query: 202 GTPDVINLGILGFLTERNANRFWIMTS-----------------------NPRRLSGKFY 238
G I+ G + LT + I + +S +
Sbjct: 167 GITPQIDNGFIACLTGSDNRGLRIGNPVDPQSQFAKTCKLDKRCLTVSAFSHPNVSWAYE 226
Query: 239 EIFN--------------------KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
+ KP +W R I + E + S
Sbjct: 227 LCADGVYRLKPEVAEHIINEDGEIKPQQEWPPEFPRDRIPGAISIDWIERVRREKFETSA 286
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNR-------EPCPDPYAPLIMGCDIAEEGGDN 331
+ V G++ + D I L ++++A + P +G D+ + GGD
Sbjct: 287 YWKGRVMGEYAEDAADGIILLTLLKQARSLYDQNPQYWDAIAKRYPWRLGLDVGD-GGDP 345
Query: 332 TVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY-----RPDAIIIDANNTGARTCDY 386
+ L RGPV+ + + + + +I +D GA T
Sbjct: 346 HALALLRGPVLYEVQIHPTKGDLLDTERAADIAASQIKLLGTGYSIAVDNTGVGAGTLAK 405
Query: 387 LEMLGYHVYRVLGQKRAVDLEF---------CRNRRTELHVKMADWLEFAS-----LINH 432
L+ GY + N + EL+ + + L L N
Sbjct: 406 LKKTGYQALPCRFGDVPSYKKKKQKEEPKQKFTNLKAELYWQFRELLMGGRIAIAPLENE 465
Query: 433 SGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
+ Q+L + + + E+ E K + + +S D S+ ++
Sbjct: 466 EYVFQDLTATR-YSTNTKDEIFCEPKDKTKSRLGRSPD-SEAVIIALTNP 513
>gi|300907068|ref|ZP_07124735.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
84-1]
gi|301304068|ref|ZP_07210185.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
124-1]
gi|300401186|gb|EFJ84724.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
84-1]
gi|300840675|gb|EFK68435.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
124-1]
gi|315257729|gb|EFU37697.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
85-1]
Length = 440
Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats.
Identities = 61/448 (13%), Positives = 122/448 (27%), Gaps = 66/448 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR K+ A + ++ + C A Q++ + V L + ++
Sbjct: 4 GGRSSSKSWDAAGIAIF--LSNKYSLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH 58
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + E + G + +EA
Sbjct: 59 --------RFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGI-----SVLWLEEAHAL 105
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + + + W + + + P +D +I+ +
Sbjct: 106 TEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSD 164
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIMG 321
+ + I A D D + G D + I L+ IE A++ +P +G
Sbjct: 165 TMLKVIEAAKRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLNFEPSGRKRIG 224
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTG 380
D+A+ G D V R G V+ +W + + R I+ D+ G
Sbjct: 225 FDVADSGADKCANVYRHGSVVYWADEWKAKEDELLKSCQRTYQAALERDADIVYDSIGVG 284
Query: 381 ARTCDYLEMLG------------YHVYRVLGQK----------RAVDLEFCRNRRTELHV 418
A + + R + +F N + +
Sbjct: 285 ASAGAKFAEINEDRKRENMNASRINYQRFNAGAGVNEPDYEYIGIPNKDFFANLKAQAWW 344
Query: 419 KMADWLE-------FASLINHSGLIQNLKS------------LKSFIVPNTGELAIESKR 459
+AD LI S G + +ESK+
Sbjct: 345 LVADRFRNTFNAVKNGEQYPVDELISIDSSCPLLEKLKLELTTPHRDFDKNGRVMVESKK 404
Query: 460 ---VKGAKSTDYSDGLMYTFAENPPRSD 484
+ S + +D + FA D
Sbjct: 405 DLAKRDVPSPNVADAFIMAFAPTDTAMD 432
>gi|268589862|ref|ZP_06124083.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
DSM 1131]
gi|291314845|gb|EFE55298.1| phage terminase, large subunit, PBSX family [Providencia rettgeri
DSM 1131]
Length = 470
Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats.
Identities = 58/454 (12%), Positives = 120/454 (26%), Gaps = 76/454 (16%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + + + + + G +EA
Sbjct: 68 TIEREGYNNEFEIQRTMIKHLGTGAEFMFYGIKNNPTKIKSLEGV-----DVCWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + N+ W+ + L + P DD +
Sbjct: 123 VTKESWDILIPTIRKPNSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTANYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIM 320
+ + + R G+ + I +E A + +I
Sbjct: 182 DVLRLEMEECKRKNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKKLGWKAKGAIIA 241
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D ++ GGD +R G V++ + + D+ + + + D + D + G
Sbjct: 242 THDPSDVGGDAKGYAMRHGSVVKRISEGLLMDVNDGADWATEKAIQDGADHFLWDGDGLG 301
Query: 381 AR----TCDYLEMLGYHVYRVLGQKRAVDLEF-----------------------CRNRR 413
A D V G + D + RN+R
Sbjct: 302 AALRRQVTDAFTGKQTTVTMFKGSESPFDEDALYQSGAWADEVVSGDNSRTIGDVFRNKR 361
Query: 414 TELHVKMADWL-------EFASL--INH--------------SGLIQNLKSLKSFIVPNT 450
+ + +AD L E + L L ++
Sbjct: 362 AQFYYALADRLYLTYRAVEHGEYANPDDMISFDKEAIGEQMLEKLFAELTQIQR-KFNGN 420
Query: 451 GEL----AIESKRVKGAKSTDYSDGLMYTFAENP 480
G+L ++ K G S + +D LM +
Sbjct: 421 GKLELMTKVDMKVKLGIPSPNLADSLMMSMYCPV 454
>gi|261402679|ref|YP_003246903.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
M7]
gi|261369672|gb|ACX72421.1| protein of unknown function DUF264 [Methanocaldococcus vulcanius
M7]
Length = 437
Score = 173 bits (438), Expect = 6e-41, Method: Composition-based stats.
Identities = 65/415 (15%), Positives = 131/415 (31%), Gaps = 53/415 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E ++ + ++AGR GK+ L +L+++L T+ +A
Sbjct: 33 QKEIVKAFFSGKYK----------TIIVAAGRRFGKSKLMCFLLIFLSCTQKDKKFAVIA 82
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ ++ E+ ++ ++ + +
Sbjct: 83 PYYANAR-IIFKELRTYIEK---------NKTLQKLVKRITESPYMVIE------FKTGC 126
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRL 233
D +I DEA+ DV+ I L + +A I T N
Sbjct: 127 IIDFRSADNPTSIRGESYHLVILDEAAFIKDDVVKYVIKPLLIDYDAPLIEISTPNGHNH 186
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + + + F+ T + + S E I +G DS V + E C +F
Sbjct: 187 FYESFLMGENRQNRHISFRFPTWSNPFLPKSVIEEIKREFGEDSLVWKQEFCAEFIDDQD 246
Query: 294 DSFIPLNIIEEALNREPCP----DPYAPLIMGCDIAEEGGDNTVVVLR---RGPVIEHLF 346
F I++ ++ + +MG D+A+ +++L + +
Sbjct: 247 AVF-KWEYIQQCIDSNIELLTVGEKGHRYVMGVDLAKYQDYTVIIILDVSENPYKLVYFE 305
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ +I L K++P +D+ G + LE +
Sbjct: 306 RFKDKPYSYVVERIKELYIKFKPVVC-VDSTGVGDPVVEQLEDCN----PIPF------- 353
Query: 407 EFCRNR-RTELHVKMADWLE--FASLINHSGLIQNLKSLKSFIVPNTGELAIESK 458
N+ + +L K+ LE LI LK + T ++ E+K
Sbjct: 354 -KFTNQSKMQLITKLQTALERKEVIFPYIDTLITELKYFRYVKKKTT--ISFEAK 405
>gi|262316909|emb|CBA18135.1| putative terminase B [Paenibacillus phage phiBP]
Length = 248
Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats.
Identities = 66/241 (27%), Positives = 105/241 (43%), Gaps = 18/241 (7%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
+P+++ E + SV++ + ++ +G+G+GKT L A + LW + P
Sbjct: 25 KSPKTFFKEILNFSPDKWQESVSDDIAKYRFVSVRSGQGVGKTALEAAISLWFLCCFPFP 84
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
V+C A + QL LWAE+SKW S P K + ++ + +
Sbjct: 85 RVVCTAPTRQQLNDVLWAEISKWQSQSPILKRILKWTKTKIYMKNYE------------E 132
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ RT + +P+ G H Y M I DEASG D I I G L+ M
Sbjct: 133 RWFATARTAT--KPENMQGFHEDY-MLFIVDEASGVDDRIMAAIFGTLS--GDYNKLFMC 187
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
NP + SG F++ N+ ++ ++ E + A+YG SDV RV V G+
Sbjct: 188 GNPTKTSGFFFDSHNRDRAIYRTHRVSCLDSPRTSKENIEMLKAKYGEGSDVWRVRVLGE 247
Query: 288 F 288
F
Sbjct: 248 F 248
>gi|74311301|ref|YP_309720.1| putative bacteriophage protein [Shigella sonnei Ss046]
gi|73854778|gb|AAZ87485.1| putative bacteriophage protein [Shigella sonnei Ss046]
Length = 473
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/442 (13%), Positives = 121/442 (27%), Gaps = 66/442 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR K+ A + ++ + C A Q++ + V L + ++
Sbjct: 36 GGRSSSKSWDAAGIAIF--LSNKYTLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH 90
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + E + G + +EA
Sbjct: 91 --------RFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGI-----DVLWLEEAHAL 137
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + + + W + + + P + +I+ +
Sbjct: 138 TEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLSD 196
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIMG 321
+ + I A D D + G D + I L+ IE A++ +P +G
Sbjct: 197 TMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRIG 256
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTG 380
D+A+ G D V R G V+ +W + + R I+ D+ G
Sbjct: 257 FDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREADIVYDSIGVG 316
Query: 381 ARTCDYLEMLG----------YHVYRVLGQKRA------------VDLEFCRNRRTELHV 418
A + V A + +F N + +
Sbjct: 317 ASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWW 376
Query: 419 KMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIVPNTGELAIESKR 459
+AD + LI + G + +ESK+
Sbjct: 377 LVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKK 436
Query: 460 ---VKGAKSTDYSDGLMYTFAE 478
+ S + +D + FA
Sbjct: 437 DLAKREIPSPNVADAFIMAFAP 458
>gi|16760783|ref|NP_456400.1| bacteriophage protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|25512494|pir||AE0735 probable bacteriophage protein STY2040 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503080|emb|CAD05583.1| putative bacteriophage protein [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 467
Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/442 (13%), Positives = 121/442 (27%), Gaps = 66/442 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR K+ A + ++ + C A Q++ + V L + ++
Sbjct: 30 GGRSSSKSWDAAGIAIF--LSNKYTLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH 84
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + E + G + +EA
Sbjct: 85 --------RFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGI-----DVLWLEEAHAL 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + + + W + + + P + +I+ +
Sbjct: 132 TEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLSD 190
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIMG 321
+ + I A D D + G D + I L+ IE A++ +P +G
Sbjct: 191 TMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRIG 250
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTG 380
D+A+ G D V R G V+ +W + + R I+ D+ G
Sbjct: 251 FDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREADIVYDSIGVG 310
Query: 381 ARTCDYLEMLG----------YHVYRVLGQKRA------------VDLEFCRNRRTELHV 418
A + V A + +F N + +
Sbjct: 311 ASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWW 370
Query: 419 KMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIVPNTGELAIESKR 459
+AD + LI + G + +ESK+
Sbjct: 371 LVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKK 430
Query: 460 ---VKGAKSTDYSDGLMYTFAE 478
+ S + +D + FA
Sbjct: 431 DLAKREIPSPNVADAFIMAFAP 452
>gi|188492395|ref|ZP_02999665.1| phage terminase large subunit [Escherichia coli 53638]
gi|188487594|gb|EDU62697.1| phage terminase large subunit [Escherichia coli 53638]
Length = 467
Score = 170 bits (429), Expect = 6e-40, Method: Composition-based stats.
Identities = 59/442 (13%), Positives = 121/442 (27%), Gaps = 66/442 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR K+ A + ++ + C A Q++ + V L + ++
Sbjct: 30 GGRSSSKSWDAAGIAIF--LSNKYTLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH 84
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + E + G + +EA
Sbjct: 85 --------RFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGI-----DVLWLEEAHAL 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + + + W + + + P + +I+ +
Sbjct: 132 TEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLSD 190
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIMG 321
+ + I A D D + G D + I L+ IE A++ +P +G
Sbjct: 191 TMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRIG 250
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTG 380
D+A+ G D V R G V+ +W + + R I+ D+ G
Sbjct: 251 FDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREADIVYDSIGVG 310
Query: 381 ARTCDYLEMLG----------YHVYRVLGQKRA------------VDLEFCRNRRTELHV 418
A + V A + +F N + +
Sbjct: 311 ASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWW 370
Query: 419 KMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIVPNTGELAIESKR 459
+AD + LI + G + +ESK+
Sbjct: 371 LVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKK 430
Query: 460 ---VKGAKSTDYSDGLMYTFAE 478
+ S + +D + FA
Sbjct: 431 DLAKREIPSPNVADAFIMAFAP 452
>gi|324012808|gb|EGB82027.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
60-1]
Length = 441
Score = 170 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 59/442 (13%), Positives = 121/442 (27%), Gaps = 66/442 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR K+ A + ++ + C A Q++ + V L + ++
Sbjct: 4 GGRSSSKSWDAAGIAIF--LSNKYTLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH 58
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + E + G + +EA
Sbjct: 59 --------RFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGI-----DVLWLEEAHAL 105
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + + + W + + + P + +I+ +
Sbjct: 106 TEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLSD 164
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIMG 321
+ + I A D D + G D + I L+ IE A++ +P +G
Sbjct: 165 TMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRIG 224
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTG 380
D+A+ G D V R G V+ +W + + R I+ D+ G
Sbjct: 225 FDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREADIVYDSIGVG 284
Query: 381 ARTCDYLEMLG----------YHVYRVLGQKRA------------VDLEFCRNRRTELHV 418
A + V A + +F N + +
Sbjct: 285 ASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWW 344
Query: 419 KMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIVPNTGELAIESKR 459
+AD + LI + G + +ESK+
Sbjct: 345 LVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKK 404
Query: 460 ---VKGAKSTDYSDGLMYTFAE 478
+ S + +D + FA
Sbjct: 405 DLAKREIPSPNVADAFIMAFAP 426
>gi|194434997|ref|ZP_03067239.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
1012]
gi|194416779|gb|EDX32906.1| phage terminase, large subunit, pbsx family [Shigella dysenteriae
1012]
gi|323166781|gb|EFZ52535.1| phage terminase, large subunit, PBSX family [Shigella sonnei 53G]
Length = 447
Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats.
Identities = 59/442 (13%), Positives = 121/442 (27%), Gaps = 66/442 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR K+ A + ++ + C A Q++ + V L + ++
Sbjct: 10 GGRSSSKSWDAAGIAIF--LSNKYTLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH 64
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + E + G + +EA
Sbjct: 65 --------RFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGI-----DVLWLEEAHAL 111
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + + + W + + + P + +I+ +
Sbjct: 112 TEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLSD 170
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIMG 321
+ + I A D D + G D + I L+ IE A++ +P +G
Sbjct: 171 TMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRIG 230
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTG 380
D+A+ G D V R G V+ +W + + R I+ D+ G
Sbjct: 231 FDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREADIVYDSIGVG 290
Query: 381 ARTCDYLEMLG----------YHVYRVLGQKRA------------VDLEFCRNRRTELHV 418
A + V A + +F N + +
Sbjct: 291 ASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWW 350
Query: 419 KMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIVPNTGELAIESKR 459
+AD + LI + G + +ESK+
Sbjct: 351 LVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKK 410
Query: 460 ---VKGAKSTDYSDGLMYTFAE 478
+ S + +D + FA
Sbjct: 411 DLAKREIPSPNVADAFIMAFAP 432
>gi|282598783|ref|YP_003359102.1| putative large subunit terminase [Clavibacter phage CMP1]
gi|262212571|gb|ACY35907.1| putative large subunit terminase [Clavibacter phage CMP1]
Length = 872
Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats.
Identities = 94/459 (20%), Positives = 157/459 (34%), Gaps = 57/459 (12%)
Query: 91 TTLNAWLVLWLMSTRPG--ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
T L LV W +S P SV+ A Q+ ++ + +L + + ++
Sbjct: 424 TRLAGDLVTWFVSVFPPEETSVMVSAPIREQIDVMMFRYLRDNYNLAIEREQPLIGEITK 483
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
P W K R +F G H +A++ DEA G P+ +
Sbjct: 484 WP-YWQVGAPL------DKKLVMPKRPADGNLISSFQGIH-DGHVAVVLDEAGGLPEDLY 535
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD--WKRFQIDTRTVEGIDPSFH 266
+G T +A + NP + + F+E F W RF I
Sbjct: 536 IGANAVTTNFHAR--ILAIGNPDKRNTPFHERFTDTEKFSSWNRFTIGAEDTPNFTG--- 590
Query: 267 EGIIARYGLDSDVTRV---------------------EVCGQFPQQDIDSFIPLNIIEEA 305
E I D DV + +V G FP+ D +F ++I
Sbjct: 591 EKIYEDPAKDEDVKKHLVQVSWAVEMRKSARPSVVAAKVDGNFPESDDTTFFDQSVINRG 650
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD---LRTTNNKISG 362
+ E P+ MG DI+ +G D +V + G I +W++ D + +I
Sbjct: 651 YSTEIEPESTDFKYMGVDISYQGEDQSVAYINHGGQIRIADEWNRFDGAEHIESAIRIHN 710
Query: 363 LVEKYRPDAIIIDANNTGARTC------DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
+ + ID TGA D + Y + V G R + N R
Sbjct: 711 KACQEGVQEVRIDMAGTGAGVYSNLKMLDQFKDKPYVLIGVNGANRTPNSNRWLNARAWH 770
Query: 417 HVKMADWLEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSD 470
+ + L + I L + ++ S N G+L I K R G S D+ D
Sbjct: 771 YDQFRTGLITGKIDITITDVDLKKEMELQPS-TFTNRGQLQITRKDDMRKMGISSPDHLD 829
Query: 471 GLMYTFAENPPRSDMDFGRCPSYQ---YEGVDLLIERRF 506
+Y+ + P ++ + + +LL+ R+
Sbjct: 830 AAIYSAIDTTPWTEGATAGMTPGETVVLDPFELLMMDRY 868
>gi|16759908|ref|NP_455525.1| prophage terminase large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142320|ref|NP_805662.1| prophage terminase large subunit [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213583175|ref|ZP_03365001.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213647535|ref|ZP_03377588.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213855100|ref|ZP_03383340.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|25512685|pir||AF0621 probable prophage terminase large chain STY1047 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16502201|emb|CAD05440.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29137950|gb|AAO69511.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
Length = 467
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 66/448 (14%), Positives = 126/448 (28%), Gaps = 66/448 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR K+ A ++L C A Q++ + V L + ++
Sbjct: 30 GGRSSSKSWDAAGFAIFLA--NKYSLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH 84
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + E + G + +EA
Sbjct: 85 --------RFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGI-----DVLWLEEAHAL 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + + + W + + + P +D +I+ +
Sbjct: 132 TEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSD 190
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMG 321
+ + I A D + G D + I L+ IE A++ D P +G
Sbjct: 191 TMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIG 250
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTG 380
D+A+ G D V R G VI +W + + R I+ D+ G
Sbjct: 251 FDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAMERDADIVYDSIGVG 310
Query: 381 ARTCDYLEMLG----------YHVYRVLGQKRA------------VDLEFCRNRRTELHV 418
A + V A + +F N + +
Sbjct: 311 ASAGAKFSEINDDRKRENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWW 370
Query: 419 KMADWLEFA-SLINH--SGLIQNLKSL----------------KSFIVPNTGELAIESKR 459
+AD + IN+ L+ L S+ G + +ESK+
Sbjct: 371 LVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKK 430
Query: 460 ---VKGAKSTDYSDGLMYTFAENPPRSD 484
+ S + +D + FA D
Sbjct: 431 DLAKRDIPSPNVADAFIMAFAPTDTSLD 458
>gi|322656964|gb|EFY53248.1| DNA packaging protein [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
Length = 411
Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats.
Identities = 68/348 (19%), Positives = 122/348 (35%), Gaps = 28/348 (8%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ +++G G GK++L A L+L M P VI +AN Q+KT ++ V ++ +
Sbjct: 51 QETGSRTTVTSGHGTGKSSLTAMLLLIFMILFPDARVIIVANKIGQVKTGVFKYVKQYWA 110
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+H + L +Y + +C+ Y + G H + +
Sbjct: 111 NAVKRHGWLQTYFVLSDTMFYE-------RSRKGIWEVLCKGYRLGNEEALAGEHAAH-L 162
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-------KPLD 246
+I DEASG D + G LTE + +M S P R SG FY+ + P
Sbjct: 163 LLILDEASGISDKAIGVMTGALTEEDNR--MLMLSQPTRPSGYFYDSHHSQAKTPDNPKG 220
Query: 247 DWKRFQIDTRTVEGIDPSFH-EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
W +++ + P F + ++ G DS V+V GQFP++ + + + A
Sbjct: 221 IWTAIVLNSEESPFVTPQFIKQKLLEYGGRDSIEYMVKVLGQFPREINGYLLGRDECDRA 280
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNT-----VVVLRRGPVIEHLFDWSKTDLRT---TN 357
R+ + + D+ + V R + +
Sbjct: 281 ARRKVLLEKNWGWVATADVGNGRDKSVLNICKVSGHRDKRRVVNFKVMEMPGTMDPLAFA 340
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY-RVLGQKRAV 404
+ I + I I + G + V R +
Sbjct: 341 DFIYNECTPEKYPNITIAVDADGLVLI-RVRSWCVVVRTRYVFGGENP 387
>gi|224583103|ref|YP_002636901.1| terminase large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467630|gb|ACN45460.1| terminase large subunit [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 492
Score = 167 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 66/474 (13%), Positives = 137/474 (28%), Gaps = 63/474 (13%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P FK A GRG KT ++L + G +IC +K + +AE+ + ++
Sbjct: 16 QPARFKVA-YGGRGSAKTRTFITILLNNVI-YHGWKLICFREYMKSIKESCYAEIVEEIN 73
Query: 134 LLPNKHWFEMQSLSLHPA-PWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ + L +++ E +
Sbjct: 74 RRNLHSLVTINKTEIFANSGGRISFDFLRLNVENIKGYANFDAALVEEAENVSKDSWETL 133
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK-RF 251
+ + E + + + + ++ R ++ + Y +++ + +
Sbjct: 134 IPTVRKEF--YSAEYGRVVESEIWVAYNPKNRLSDTHQRFVTNRIYPDYDENGNRYCIVK 191
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
QI+ + + + ++ R G+ + I +E A +
Sbjct: 192 QINYTANPWFPETLRRDMEIMKKANHELYRHVYLGEPVGASEMAIIKFAWLEAATDAHIK 251
Query: 312 --PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+I D ++ G D +R G V++ + + D+ + S L
Sbjct: 252 LGWKAKGAVIAAHDPSDTGPDAKGYAVRHGSVVKRVCEGLLMDINEGADWASSLAVIDDV 311
Query: 370 DAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDLEF----------------- 408
D + D + GA DY V G + D +
Sbjct: 312 DHFLFDGDGLGAGLRRQITDYFSGKKVTVTMFKGSESPFDEDAPYQAGAWTDEVVQGDNV 371
Query: 409 ------CRNRRTELHVKMADWL-------EFASLINHSG----------------LIQNL 439
RN+R + + +AD L E + L L
Sbjct: 372 RTIGDVFRNKRAQFYYTLADRLYRTYRAVEHGEYADPDEMLSFDKEAIGENILNKLFAEL 431
Query: 440 KSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
++ G+L +E K+ G S + +D LM + D+
Sbjct: 432 TQIQR-KFNGNGKLELMTKVEMKQKLGIPSPNLADALMMCMHCPESVAQPDYSS 484
>gi|303243859|ref|ZP_07330199.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
IH1]
gi|302485795|gb|EFL48719.1| protein of unknown function DUF264 [Methanothermococcus okinawensis
IH1]
Length = 445
Score = 166 bits (419), Expect = 9e-39, Method: Composition-based stats.
Identities = 64/377 (16%), Positives = 121/377 (32%), Gaps = 38/377 (10%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
++AGR GK+ L A+L+++L ST+ +A + ++ E+ K++
Sbjct: 54 IIVAAGRRFGKSKLMAFLLIFLCSTQKNKKYAVIAPFYANAR-IIFRELKKYIEKS--NV 110
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + T D +I DE
Sbjct: 111 LSRLVKRMVESPYMAIE-------------FKTGCTIDFRSADNPTSIRGESYHLVILDE 157
Query: 200 ASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
A+ DV+ I L + +A I T N + + + + F+ T T
Sbjct: 158 AAFIKDDVVKYVIKPLLLDYDAPLIEISTPNGHNHFYESFLMGKNKQNRHISFRFPTWTN 217
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP----DP 314
+ + E I G DS V + E C +F + F I++ ++ +
Sbjct: 218 PFLPKNAIEEIKQEVGEDSPVWKQEYCAEFIDNNEAVF-NWEYIQQCIDGTIKLLKSGES 276
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR---TTNNKISGLVEKYRPDA 371
+MG D+A+ + VL L + + +L +K+ L + +
Sbjct: 277 GHQYVMGVDLAKFEDYTVITVLDVSVKPYKLVYFERFNLMPYSFVADKVKELYQLFNKPQ 336
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL--EFASL 429
+ +DA GA + +E L + L K+ +
Sbjct: 337 VCMDATGPGAAVVEQVESLNP--IGFTFTSKNKLP---------LITKLQTSIVKNEVLF 385
Query: 430 INHSGLIQNLKSLKSFI 446
LI LK +
Sbjct: 386 PYLDQLITELKYFRYVK 402
>gi|161614489|ref|YP_001588454.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161363853|gb|ABX67621.1| hypothetical protein SPAB_02238 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 441
Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats.
Identities = 65/448 (14%), Positives = 125/448 (27%), Gaps = 66/448 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR K+ A ++L C A Q++ + V L + ++
Sbjct: 4 GGRSSSKSWDAAGFAIFLA--NKYSLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH 58
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + E + G + +EA
Sbjct: 59 --------RFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGI-----DVLWLEEAHAL 105
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + + + W + + + P +D +I+ +
Sbjct: 106 TEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSD 164
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMG 321
+ + I A + G D + I L+ IE A++ D P +G
Sbjct: 165 TMLKVIDAARRRYPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIG 224
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTG 380
D+A+ G D V R G VI +W + + R I+ D+ G
Sbjct: 225 FDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAMERDADIVYDSIGVG 284
Query: 381 ARTCDYLEMLG----------YHVYRVLGQKRA------------VDLEFCRNRRTELHV 418
A + V A + +F N + +
Sbjct: 285 ASAGAKFSEINDDRKRENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWW 344
Query: 419 KMADWLEFA-SLINH--SGLIQNLKSL----------------KSFIVPNTGELAIESKR 459
+AD + IN+ L+ L S+ G + +ESK+
Sbjct: 345 LVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKK 404
Query: 460 ---VKGAKSTDYSDGLMYTFAENPPRSD 484
+ S + +D + FA D
Sbjct: 405 DLAKRDIPSPNVADAFIMAFAPTDTSLD 432
>gi|320103661|ref|YP_004179252.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
gi|319750943|gb|ADV62703.1| hypothetical protein Isop_2123 [Isosphaera pallida ATCC 43644]
Length = 553
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 94/570 (16%), Positives = 158/570 (27%), Gaps = 116/570 (20%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
+ E + L + +E L G P W
Sbjct: 1 MRKEKEEIRTLATPLMVEESTAGMVARALRCLADDPVGFNRLALGRPDYW---------- 50
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
++ G +GK+ L A L LW + T PG V+ A S+ L T L
Sbjct: 51 EGQRRAALALTRARSVVVATGNAVGKSYLAAGLTLWWLYTHPGSLVVATAPSQGLLGTVL 110
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ E+ K L+ + + + + L G C + +
Sbjct: 111 FRELQKALAASR-RRGLGLPGMVVGSDRGTPFSLRVGPGRRLAAEGWGCLGIATRGVERL 169
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G H+ M ++ DEASG + R + NP F+++ +
Sbjct: 170 AGRHHADLM-VVVDEASGVQPEAWEALTSL-----NPRKLFVCGNPLTPGTVFHKLHQRG 223
Query: 245 LDDWK-----------RFQIDTRTVEGI----------DPSFHEGIIARYGLDSDVTRVE 283
L + I + I D F ++G S +
Sbjct: 224 LTEASDPSIPDHARGVALTIPSTASPDINLERSPRGLADRGFIREAERQWGRGSPLWLSH 283
Query: 284 VCGQFPQQDIDSFIPLNIIEEA----LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
V G FP + + I +++A ++ P P++ A G D T +V+R
Sbjct: 284 VEGVFPTVAVHALIEPGWLDQAASLERSQTYENPPGQPVLGCDLAAGVGADRTAIVVRDE 343
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPD--AIIIDANNTGARTCDYLEMLGYHVYRV 397
I L + I+ L K+ I+ D GA L G
Sbjct: 344 GGIRELIASDRLAPDEAATLIASLARKHLIAPERILYDGAGLGAELTTRLARQGPGFVHA 403
Query: 398 LG-QKRAVDLEFCRNRRTELHVKMADWL-------------------------------- 424
A N R ++ L
Sbjct: 404 RAIFGAASGGAGFLNHRAWCGWRLRQRLDPSYSGLDPIAMTGGEPATRVVWDGDRFDPAT 463
Query: 425 EFASLINHSG----------------------------------LIQNLKSLKSFIVPNT 450
+ L L + L++L+ +V
Sbjct: 464 QTWRLPPDDDPTDFAALGPALRPARSNQASRLPFVIPPEPWWPNLREELEALRYRLVGT- 522
Query: 451 GELAIESK---RVKGAKSTDYSDGLMYTFA 477
+LA+E K R + +S D +D L+ TF+
Sbjct: 523 -KLALEDKRETRRRLGRSPDLADALLITFS 551
>gi|294663744|gb|ADF29298.1| terminase [Pseudomonas phage JG024]
Length = 460
Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 59/453 (13%), Positives = 128/453 (28%), Gaps = 72/453 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I GR K+ + + ++ + +C + ++ +++ + + F
Sbjct: 21 IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSEYNGEF 79
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + + G + +EA
Sbjct: 80 IFTK------------NSIKHKSTGSEFLFYGIARNLSEIKSTEGI-----DILWLEEAH 122
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEG 260
I + + N+ + I NP ++ Y+ F KP D I+
Sbjct: 123 YLTQEQWEVIEPTIRKENSEIWIIF--NPNEVTDFVYQNFVVKPPKDSCVKMINWNENPF 180
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPL 318
+ + + I Y D + G S I L I A++ +P
Sbjct: 181 LSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWEPAGSK 240
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDAN 377
+G D+A++G D L G VI + +W + + + K + ++ D+
Sbjct: 241 RIGFDVADDGDDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVYNLAKLKGASVTYDSI 300
Query: 378 NTGARTCDYLEMLG-----YHVYRVLGQKRA-----------------VDLEFCRNRRTE 415
GA L + + + + N + +
Sbjct: 301 GVGAHVGSKFAELNDASPDFKLIYDPFNAGGAVDKPDDVYMKLPHTTIKNKDHFSNIKAQ 360
Query: 416 LHVKMA-------DWLEFASLINHSGLIQ------------NL---KSLKSFIVPNTGEL 453
++A + +E + LI L S + G
Sbjct: 361 KWEEVATRFRKTYEAVEHGKVYPFDELISINSETIHPDKLNQLCIELSSPRKDLDMNGRF 420
Query: 454 AIESKR----VKGAKSTDYSDGLMYTFAENPPR 482
+ESK+ + KS + +D ++ + +
Sbjct: 421 KVESKKDMREKRKIKSPNIADSVIMSAILPIRK 453
>gi|330958838|gb|EGH59098.1| hypothetical protein PMA4326_09820 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 512
Score = 161 bits (406), Expect = 3e-37, Method: Composition-based stats.
Identities = 86/485 (17%), Positives = 145/485 (29%), Gaps = 66/485 (13%)
Query: 46 EGFSAPRSW---QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM 102
EG P W Q E + ++ + + GR G +T A
Sbjct: 28 EGQILPFVWNDAQRELHKRLEEQL------SLTGWVRAIVLKGRQQGISTYVAARFYKRT 81
Query: 103 STRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
S G + L TL+ + L S
Sbjct: 82 SMNFGKRTMIL-THLDAATQTLFGMAKTFFELS--------DDTLRPTTKANSGTELSFA 132
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ S + + R DT H + N + ++ ++
Sbjct: 133 KLRSGYKVATAGSPGAGRSDTIQFLHASEMAFWANAQ-----KIMAGLGQTVPLIDDSEA 187
Query: 223 FWIMTSNPRRL-SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS----------------- 264
T+N +F+++ D+ I G +
Sbjct: 188 IIESTANGMGNLFHQFWQLAVAGKSDYMAVFIPWFVESGYRRAVPKDFELSEEDYEYMEA 247
Query: 265 ---FHEGIIARYGLDSDVTRVEVCG---QFPQQDIDSF--------IPLNIIEEALNREP 310
E + R G S +V ++P +F I + A +E
Sbjct: 248 YGLDEEQMAWRAGKISSDFANDVDFFNQEYPATPDLAFQKVGHKPLIKTVKVSLARKKEI 307
Query: 311 CPDPY-APLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG-LVEKYR 368
+ ++G D A GGD + + R+G V + + D + + L++
Sbjct: 308 KHERRIGAHVVGLDPAR-GGDTSTFIHRQGRVAWGIERNNIPDTMAVVGQAARMLMDDKT 366
Query: 369 PDAIIIDANNTGARTCDYLEMLGY--HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF 426
+ ID GA D L LG+ V V A D N+R E+ +MA+W+
Sbjct: 367 IRMMFIDIGGLGAGIYDRLVELGFGDRVTAVNFGSSASDSRKYANKRCEMWGEMAEWIHD 426
Query: 427 A---SLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAENP 480
S+ + L +L S + G+L + K + K +S D D L TFAE
Sbjct: 427 DITPSIPDDDQLHSDLTSAAKDKYTSNGQLKLLPKEDAKKKIGRSPDDGDALALTFAEPV 486
Query: 481 PRSDM 485
D
Sbjct: 487 SADDE 491
>gi|126011061|ref|YP_001039811.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
gi|119712637|gb|ABL96858.1| TerL-like protein [Burkholderia ambifaria phage BcepF1]
Length = 459
Score = 160 bits (405), Expect = 4e-37, Method: Composition-based stats.
Identities = 56/450 (12%), Positives = 121/450 (26%), Gaps = 71/450 (15%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A+ GR K+ A ++L + +C + ++ +++ +
Sbjct: 20 ALYGGRASSKSHDAAGFAVYLA-RNYTVKFLCARQFQNKISESVYTLIK----------- 67
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + + + G + +EA
Sbjct: 68 -GKIDAAGWTKEFDVTISSIRHKKTGAEFLFYGIARNLNEIKSTEGV-----DILWLEEA 121
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR-FQIDTRTVE 259
+ I + + + I NP + + Y+ F QI+
Sbjct: 122 QYLTEEQWNVINPTIRREGSQIWLI--WNPDQYTDFIYQNFVVNPPADCLSKQINWTENP 179
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAP 317
+ + + I Y D + G + I L + A++
Sbjct: 180 FLSDTMLKVIYDEYQRDPKLAEHVYGGAPKMGGDKAIIQLQYVLAAIDAHKKLGWKIEGS 239
Query: 318 LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDA 376
G DIA++G D +V G V+ +W + + + +II D+
Sbjct: 240 KRTGFDIADDGDDANAIVDAIGNVVVWAEEWDGLEDELLKSSTKVFNHALEKGSSIIFDS 299
Query: 377 NNTGARTCDYLEMLG----YHVYRVLGQKRA-----------------VDLEFCRNRRTE 415
GA L + + E N + +
Sbjct: 300 IGVGAHAGSKFSELNEARSLEIIYEPFNAGGAVYDPDGTYMKLPHVVITNREHFSNVKAQ 359
Query: 416 LHVKMADWLEF-------ASLINHSGLI---------------QNLKSLKSFIVPNTGEL 453
+ ++A + H LI + + V G+
Sbjct: 360 MWDRVATRFRKTYEVVTYGANHPHDELISISSEHVPAKILDKLKIELASPHKDVDGMGKF 419
Query: 454 AIESKR----VKGAKSTDYSDGLMYTFAEN 479
+ESK+ +G KS + +D + +
Sbjct: 420 KVESKKDMREKRGIKSPNIADAFIMAMIQP 449
>gi|213423381|ref|ZP_03356369.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 414
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 62/422 (14%), Positives = 119/422 (28%), Gaps = 64/422 (15%)
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V C A Q++ + V L + ++ + + +
Sbjct: 1 VFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH--------RFRILNNKIINRVTGSEF 49
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ E + G + +EA + + + + + W + +
Sbjct: 50 VFYGLWRNIEEIKSLEGI-----DVLWLEEAHALTEYQWKILEPTIRKEGSE-CWFIFNP 103
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ P +D +I+ + + + I A D + G
Sbjct: 104 GLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPE 163
Query: 290 QQDIDSFIPLNIIEEALNREPCPD--PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
D + I L+ IE A++ D P +G D+A+ G D V R G VI +
Sbjct: 164 SDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADE 223
Query: 348 WSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTGARTCDYLEMLG----------YHVYR 396
W + + R I+ D+ GA + V
Sbjct: 224 WKAKEDELLKSCQRTYQAAMERDADIVYDSIGVGASAGAKFSEINDDRKRENAYARRVNY 283
Query: 397 VLGQKRA------------VDLEFCRNRRTELHVKMADWLEFA-SLINH--SGLIQNLKS 441
A + +F N + + +AD + IN+ L+ L S
Sbjct: 284 QRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWWLVADRFRNTFNAINNGEQYLVDELIS 343
Query: 442 L----------------KSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPR 482
+ G + +ESK+ + S + +D + FA
Sbjct: 344 IDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTS 403
Query: 483 SD 484
D
Sbjct: 404 LD 405
>gi|218148543|ref|YP_002364311.1| terminase, large subunit [Pseudomonas phage 14-1]
gi|218059739|emb|CAU13815.1| terminase, large subunit [Pseudomonas phage 14-1]
Length = 460
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 60/453 (13%), Positives = 129/453 (28%), Gaps = 72/453 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I GR K+ + + ++ + +C + ++ +++ + + F
Sbjct: 21 IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSEYNGEF 79
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
I + + + G + +EA
Sbjct: 80 IFTK------------NSIKHKITGSEFLFYGIARNLSEIKSTEGI-----DILWLEEAH 122
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEG 260
I + + N+ + I NP ++ Y+ F KP D I+
Sbjct: 123 YLTQEQWEVIEPTIRKENSEIWIIF--NPNEVTDFVYQNFVVKPPKDSCVKMINWNENPF 180
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPL 318
+ + + I Y D + G S I L I A++ +P
Sbjct: 181 LSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWEPAGSK 240
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDAN 377
+G D+A++G D L G VI + +W + + + K + ++ D+
Sbjct: 241 RIGFDVADDGEDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVYNLAKMKGASVTYDSI 300
Query: 378 NTGARTCDYLEMLG-----YHVYRVLGQKRA-----------------VDLEFCRNRRTE 415
GA L + + + + N + +
Sbjct: 301 GVGAHVGSKFAELNDASPDFKLIYDPFNAGGAVDKPDDIYMKLPHTTIKNKDHFSNIKAQ 360
Query: 416 LHVKMA-------DWLEFASLINHSGLIQ------------NL---KSLKSFIVPNTGEL 453
++A + +E + LI L S + G
Sbjct: 361 KWEEVATRFRKTYEAVEHGKVYPFDELISINSETIHPDKLNQLCIELSSPRKDLDMNGRF 420
Query: 454 AIESKR----VKGAKSTDYSDGLMYTFAENPPR 482
+ESK+ + KS + +D ++ + +
Sbjct: 421 KVESKKDMREKRKIKSPNIADSVIMSAILPIRK 453
>gi|85059798|ref|YP_455500.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84780318|dbj|BAE75095.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 483
Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats.
Identities = 60/428 (14%), Positives = 123/428 (28%), Gaps = 61/428 (14%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P +K A GRG GK+ A L++ R G A E ++
Sbjct: 13 QPHRYKIA-KGGRGSGKSWAIARLLVE--IARRGTYRFLCA-----------REFQASMA 58
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+ + + + + + + + + G
Sbjct: 59 DSVIQLIADTIQREGYLKEFEIQKAYIRHLATDSLFMFYGIKNNVTKIKSLEGI-----D 113
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+EA ++ + + + W+ + L + PLDD +
Sbjct: 114 IAWVEEAEAVTKESWDILIPTIRKPGSE-IWVSFNPKNILDDTYQRFVVNPLDDICLLTV 172
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP- 312
+ D D+ G+ + I I A++
Sbjct: 173 HYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGEPVADSDLAIIKPLWIAAAVDAHMTLG 232
Query: 313 -DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
D +G D+A+EG D + +G V+ L +W + D+ ++N+++ +
Sbjct: 233 FDAVGEKRLGFDVADEGEDCNALCFVQGSVVLDLDEWHRGDVIASSNRVNRYAIERGITC 292
Query: 372 IIIDANNTGARTCDYLEML-GYHVYRVLGQKRA-----------VDLEFCRNRRTELHVK 419
II D+ GA +L+ + +V + + + N + +
Sbjct: 293 IIYDSIGVGAGVKAHLKRIAAINVKGFNAGEAVKDPDALYMPGKTNKDMFANIKAQAWWA 352
Query: 420 MADWL--------------EFASLINHSGLI-------------QNLKSLKSFIVPNTGE 452
+ + + A L LI + S N G
Sbjct: 353 VRERFYKTWRCIEAKKQDPKAALLYPTDELISLSTTNIKRLEYLKAELSRPRVDYDNNGH 412
Query: 453 LAIESKRV 460
+ +ESK+
Sbjct: 413 VKVESKKD 420
>gi|213161040|ref|ZP_03346750.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 421
Score = 160 bits (403), Expect = 7e-37, Method: Composition-based stats.
Identities = 61/429 (14%), Positives = 118/429 (27%), Gaps = 64/429 (14%)
Query: 103 STRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
C A Q++ + V L + ++ +
Sbjct: 1 MANKYSLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH--------RFRILNNKIIN 49
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ + + E + G + +EA + + + + +
Sbjct: 50 RVTGSEFVFYGLWRNIEEIKSLEGI-----DVLWLEEAHALTEYQWKILEPTIRKEGSE- 103
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
W + + + P +D +I+ + + + I A D +
Sbjct: 104 CWFIFNPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVH 163
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMGCDIAEEGGDNTVVVLRRGP 340
G D + I L+ IE A++ D P +G D+A+ G D V R G
Sbjct: 164 VYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGS 223
Query: 341 VIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTGARTCDYLEMLG-------- 391
VI +W + + R I+ D+ GA +
Sbjct: 224 VIYWADEWKAKEDELLKSCQRTYQAAMERDADIVYDSIGVGASAGAKFSEINDDRKRENA 283
Query: 392 --YHVYRVLGQKRA------------VDLEFCRNRRTELHVKMADWLEFA-SLINH--SG 434
V A + +F N + + +AD + IN+
Sbjct: 284 YARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWWLVADRFRNTFNAINNGEQY 343
Query: 435 LIQNLKSL----------------KSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYT 475
L+ L S+ G + +ESK+ + S + +D +
Sbjct: 344 LVDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKKDLAKRDIPSPNVADAFIMA 403
Query: 476 FAENPPRSD 484
FA D
Sbjct: 404 FAPTDTSLD 412
>gi|218457805|ref|YP_002418810.1| terminase, large subunit [Pseudomonas phage SN]
gi|218379073|emb|CAT99652.1| terminase, large subunit [Pseudomonas phage SN]
Length = 460
Score = 160 bits (403), Expect = 8e-37, Method: Composition-based stats.
Identities = 59/453 (13%), Positives = 128/453 (28%), Gaps = 72/453 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I GR K+ + + ++ + +C + ++ +++ + + F
Sbjct: 21 IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSEYNGEF 79
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + + G + +EA
Sbjct: 80 IFTK------------NSIKHKSTGSEFLFYGIARNLSEIKSTEGI-----DILWLEEAH 122
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEG 260
I + + N+ + I NP ++ Y+ F KP D I+
Sbjct: 123 YLTQEQWEVIEPTIRKENSEIWIIF--NPNEVTDFVYQNFVVKPPKDSCVKMINWNENPF 180
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPL 318
+ + + I Y D + G S I L I A++ +P
Sbjct: 181 LSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWEPAGSK 240
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDAN 377
+G D+A++G D L G VI + +W + + + K + ++ D+
Sbjct: 241 RIGFDVADDGEDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVYNLAKVKGASVTYDSI 300
Query: 378 NTGARTCDYLEMLG-----YHVYRVLGQKRA-----------------VDLEFCRNRRTE 415
GA L + + + + N + +
Sbjct: 301 GVGAHVGSKFAELNDASPDFKLIYDPFNAGGAVDKPDDVYMKLPHTTIKNKDHFSNIKAQ 360
Query: 416 LHVKMA-------DWLEFASLINHSGLIQ------------NL---KSLKSFIVPNTGEL 453
++A + +E + LI L S + G
Sbjct: 361 KWEEVATRFRKTYEAVEHGKVYPFDELISINSETIHPDKLNQLCIELSSPRKDLDMNGRF 420
Query: 454 AIESKR----VKGAKSTDYSDGLMYTFAENPPR 482
+ESK+ + KS + +D ++ + +
Sbjct: 421 KVESKKDMREKRKIKSPNIADSVIMSAILPIRK 453
>gi|197261331|ref|YP_002154147.1| putative terminase, large subunit [Pseudomonas phage LBL3]
gi|197244421|emb|CAR31156.1| putative terminase, large subunit [Pseudomonas phage LBL3]
Length = 460
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 60/453 (13%), Positives = 128/453 (28%), Gaps = 72/453 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I GR K+ + ++L + +C + ++ +++ + + F
Sbjct: 21 IYGGRASSKSHDAGGIAVYLA-ANYRLKFLCARQFQNRISESVYTLIKDKIENSEYNGEF 79
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + + G + +EA
Sbjct: 80 IFTK------------NSIKHKRTGSEFLFYGIARNLSEIKSTEGI-----DILWLEEAH 122
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEG 260
I + + N+ + I NP ++ Y+ F KP D I+
Sbjct: 123 YLTQEQWEVIEPTIRKENSEIWIIF--NPNEVTDFVYQNFVVKPPKDSCVKMINWNENPF 180
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPL 318
+ + + I Y D + G S I L I A++ +P
Sbjct: 181 LSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWEPAGSK 240
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDAN 377
+G D+A++G D L G VI + +W + + + K + ++ D+
Sbjct: 241 RIGFDVADDGEDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVYNLAKMKGASVTYDSI 300
Query: 378 NTGARTCDYLEMLG-----YHVYRVLGQKRA-----------------VDLEFCRNRRTE 415
GA L + + + + N + +
Sbjct: 301 GVGAHVGSKFAELNDASPDFKLIYDPFNAGGAVDKPDDIYMKLPHTTIKNKDHFSNIKAQ 360
Query: 416 LHVKMA-------DWLEFASLINHSGLIQ------------NL---KSLKSFIVPNTGEL 453
++A + +E + LI L S + G
Sbjct: 361 KWEEVATRFRKTYEAVEHGKVYPFDELISINSETIHPDKLNQLCIELSSPRKDLDMNGRF 420
Query: 454 AIESKR----VKGAKSTDYSDGLMYTFAENPPR 482
+ESK+ + KS + +D ++ + +
Sbjct: 421 KVESKKDMREKRKIKSPNIADSVIMSAILPIRK 453
>gi|293396491|ref|ZP_06640767.1| phage terminase large subunit [Serratia odorifera DSM 4582]
gi|291420755|gb|EFE94008.1| phage terminase large subunit [Serratia odorifera DSM 4582]
Length = 430
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 54/434 (12%), Positives = 119/434 (27%), Gaps = 70/434 (16%)
Query: 101 LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC 160
+S + + +C + +++ +++A + + +H F + +
Sbjct: 4 FLSDKYRLRFLCTRQIQNKIEESVYALLKIQIERFGLRHRFRILDNKI------------ 51
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + N+EA + + + + +
Sbjct: 52 -INRFTGSEFMFYGLWRHVDEIKS----LESIDVLWNEEAHAMTEAQWEVLEPTIRKEGS 106
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+++ + P D +I+ + + I A D+++
Sbjct: 107 ECWFLFNPRLTTDF-VWRNFVVAPPPDTLVRKINYDENPFLSRTIMNVIEAAKARDAEMF 165
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRR 338
G D ++ I L+ IE A++ +P +G D+A+ G D V
Sbjct: 166 EHVYLGMPRTDDDEAIIKLSWIEAAVDAHKALNIEPAGHRRVGFDVADSGADKCANVYAH 225
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTGARTCDYLEMLG------ 391
G V +W + + V R AII D+ GA + +
Sbjct: 226 GSVALWADEWKAREDELMKSCKRTYNVALEREAAIIYDSIGVGASSGSKFAEINEERESA 285
Query: 392 -----YHVYRVLGQKRA-------------VDLEFCRNRRTELHVKMADWLEF------- 426
V + +F N + + +AD
Sbjct: 286 SDWNVRTVDYFKFNAGGAVFEPERDYQPGITNKDFFANIKAQAWWLVADRFRNTYNVING 345
Query: 427 ---ASLINHSGLIQN------------LKSLKSFIVPNTGELAIESK---RVKGAKSTDY 468
LI S G + +E+K + + S +
Sbjct: 346 KEKRESFADDQLISIDSACPLLDKLKFELSTPKRDFDKNGRVKVETKDDLKKRDIPSPNV 405
Query: 469 SDGLMYTFAENPPR 482
+D + FA
Sbjct: 406 ADAFIMAFAPIETP 419
>gi|197261421|ref|YP_002154236.1| putative terminase, large subunit [Pseudomonas phage LMA2]
gi|197244511|emb|CAR31245.1| putative terminase, large subunit [Pseudomonas phage LMA2]
Length = 460
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 59/453 (13%), Positives = 129/453 (28%), Gaps = 72/453 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I GR K+ + + ++ + +C + ++ +++ + + F
Sbjct: 21 IYGGRASSKSHDAGGIAV-FLAANYKLKFLCARQFQNRISESVYTLIKDKIENSEYNGEF 79
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
I + + + G + +EA
Sbjct: 80 IFTK------------NSIKHKITGSEFLFYGIARNLSEIKSTEGI-----DILWLEEAH 122
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEG 260
I + + N+ + I NP ++ Y+ F KP D I+
Sbjct: 123 YLTQEQWEVIEPTIRKENSEIWIIF--NPNEVTDFVYQNFVVKPPKDSCVKMINWNENPF 180
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPL 318
+ + + I Y D + G S I L I A++ +P
Sbjct: 181 LSETMLKVIHEAYERDREQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWEPAGSK 240
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDAN 377
+G D+A++G D L G +I + +W + + + K + ++ D+
Sbjct: 241 RIGFDVADDGEDANATTLMHGNIIMEVDEWDGLEDELLKSSSRVYNLAKMKGTSVTYDSI 300
Query: 378 NTGARTCDYLEMLG-----YHVYRVLGQKRA-----------------VDLEFCRNRRTE 415
GA L + + + + N + +
Sbjct: 301 GVGAHVGSKFAELNDASPDFKLIYDPFNAGGAVDKPDDVYMKLPHTTIKNKDHFSNIKAQ 360
Query: 416 LHVKMA-------DWLEFASLINHSGLIQ------------NL---KSLKSFIVPNTGEL 453
++A + +E + LI L S + G
Sbjct: 361 KWEEVATRFRKTYEAVEHGKVYPFDELISINSETIHPDKLNQLCIELSSPRKDLDMNGRF 420
Query: 454 AIESKR----VKGAKSTDYSDGLMYTFAENPPR 482
+ESK+ + KS + +D ++ + +
Sbjct: 421 KVESKKDMREKRKIKSPNIADSVIMSAILPIRK 453
>gi|323175059|gb|EFZ60673.1| phage terminase large subunit [Escherichia coli LT-68]
Length = 399
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 48/336 (14%), Positives = 94/336 (27%), Gaps = 48/336 (14%)
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
+ +EA + + + + + W + + + P +
Sbjct: 50 EGIDVLWLEEAHALTEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEGTL 108
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+I+ + + + I A D D + G D + I L+ IE A++
Sbjct: 109 IRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAH 168
Query: 310 PCP--DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEK 366
+P +G D+A+ G D V R G V+ +W + +
Sbjct: 169 KTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAAL 228
Query: 367 YRPDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRA------------V 404
R I+ D+ GA + V A
Sbjct: 229 EREADIVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIP 288
Query: 405 DLEFCRNRRTELHVKMAD-------WLEFASLINHSGLIQ------------NLKSLKSF 445
+ +F N + + +AD + LI +
Sbjct: 289 NKDFFANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHR 348
Query: 446 IVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAE 478
G + +ESK+ + S + +D + FA
Sbjct: 349 DFDRNGRVMVESKKDLAKREIPSPNVADAFIMAFAP 384
>gi|289581321|ref|YP_003479787.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099]
gi|289530874|gb|ADD05225.1| hypothetical protein Nmag_1649 [Natrialba magadii ATCC 43099]
Length = 602
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 67/503 (13%), Positives = 144/503 (28%), Gaps = 93/503 (18%)
Query: 50 APRSWQLEFMEVVDAHCLNSVN----NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR 105
+W + +E + + + G+GK+ + A + + ++ R
Sbjct: 23 GDETWLEDAIEDYLGITVTGAQAQICRGIAANERLLVVTANGLGKSYILAAITIVWLTVR 82
Query: 106 PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
+ +E ++K T + P + S + +
Sbjct: 83 YPACSFATSGTERKMKRTY----------CKPVENLHGDARVPLPGEYKSRPERIEIDGE 132
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS-GTPDVINLGILGFLTERNANRFW 224
+H+ S + G H Y +AII + + + +T+
Sbjct: 133 PEHFFEAA---SPQDAGELEGVHAAYTLAIIEEADKKDVDAEVLDAMKSLVTDEQDRIIA 189
Query: 225 IMTSN--PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID-------------------- 262
I + + P W+ + + +
Sbjct: 190 IANPPKDETNSIYPILDEQDDPTSKWEVLEFSSFDSHNVQVELGNVDDEKVDGLASLHKI 249
Query: 263 -PSFHEGIIARYG---------------------------LDSDVTRVEVCGQFPQQDID 294
+ + + D+ R ++ ++ ++
Sbjct: 250 QDDWEDYNKEPWPGAETARTLSAPKLDADGNPVFSHSDALEDNPEFRTDLDQRWYRRRAG 309
Query: 295 SFIP----------LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEH 344
P ++ + A R+ P P G D+A +GGD T V+ G V+E
Sbjct: 310 IIPPGGASKNRPFTIDDVNAAWGRDWQPV-GRPQATGIDVARDGGDRTPVISVDGDVLEV 368
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
++ D + ++ ++E + + IDA G+ D + R A
Sbjct: 369 RYEEPCHDYTAHADDVTDVLEDDPDNPMPIDAVGEGSGFADIMHQRFPETIRFKSLGVAE 428
Query: 405 DLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSL------KSFIVPNTGE-----L 453
D ++ E + WL+ IN L + L + + + G L
Sbjct: 429 DSANYKDCWAEGVALLGKWLQNGGSINDRTLREELLVAARTLEYEETHIGSRGTNGEDVL 488
Query: 454 AIESK---RVKGAKSTDYSDGLM 473
+ K + + +S DY D M
Sbjct: 489 KLTPKEKVKERLGRSPDYLDASM 511
>gi|149408318|ref|YP_001294421.1| conserved hypothetical protein ORF004 [Pseudomonas phage F8]
gi|219523873|ref|YP_002455934.1| terminase large subunit [Pseudomonas phage PB1]
gi|190333469|gb|ACE73724.1| terminase large subunit [Pseudomonas phage PB1]
Length = 460
Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 60/453 (13%), Positives = 123/453 (27%), Gaps = 72/453 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I GR K+ + ++L + +C + ++ +++ + + F
Sbjct: 21 IYGGRASSKSHDAGGIAVYLA-ANYRLKFLCARQFQNRISESVYTLIKDKIENSEYNGEF 79
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + + G + +EA
Sbjct: 80 IFTK------------NSIKHKRTGSEFLFYGIARNLSEIKSTEGI-----DILWLEEAH 122
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEG 260
I + + N+ + I NP ++ Y+ F KP D I+
Sbjct: 123 YLTQEQWEVIEPTIRKENSEIWIIF--NPNEVTDFVYQNFVVKPPKDAFVKMINWNENPF 180
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPL 318
+ + + I Y D D G S I L I A++ +P
Sbjct: 181 LSETMLKVIHEAYERDKDQAEHIYGGIPKTGGDKSVINLKFILAAIDAHKKLGWEPAGSK 240
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDAN 377
+G D+A++G D L G VI + +W + + + K + ++ D+
Sbjct: 241 RIGFDVADDGEDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVYNLAKMKGASVTYDSI 300
Query: 378 NTGARTCDYLEMLG-------YHVYRVLGQKR---------------AVDLEFCRNRRTE 415
GA L + + N + +
Sbjct: 301 GVGAHVGSKFAELNDSSPDFKLTYDPFNAGGAVDKPDDIYMKLPHTTIKNKDHFSNIKAQ 360
Query: 416 LHVKMADWLE-------FASLINHSGLIQ------------NL---KSLKSFIVPNTGEL 453
++A + LI L S + G
Sbjct: 361 KWEEVATRFRKTYEAVVHGKVYPFDELISINSETIHPDKLNQLCIELSSPRKDLDMNGRF 420
Query: 454 AIESKR----VKGAKSTDYSDGLMYTFAENPPR 482
+ESK+ + KS + +D ++ + +
Sbjct: 421 KVESKKDMREKRKIKSPNIADSVIMSAILPIRK 453
>gi|332091158|gb|EGI96248.1| phage terminase large subunit [Shigella dysenteriae 155-74]
Length = 346
Score = 156 bits (393), Expect = 9e-36, Method: Composition-based stats.
Identities = 48/332 (14%), Positives = 94/332 (28%), Gaps = 48/332 (14%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ +EA + + + + + W + + + P + +I
Sbjct: 1 MLWLEEAHALTEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEGTLIRKI 59
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP- 312
+ + + + I A D D + G D + I L+ IE A++
Sbjct: 60 NYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLN 119
Query: 313 -DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPD 370
+P +G D+A+ G D V R G V+ +W + + R
Sbjct: 120 FEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREA 179
Query: 371 AIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRA------------VDLEF 408
I+ D+ GA + V A + +F
Sbjct: 180 DIVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDF 239
Query: 409 CRNRRTELHVKMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIVPN 449
N + + +AD + LI +
Sbjct: 240 FANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDFDR 299
Query: 450 TGELAIESKR---VKGAKSTDYSDGLMYTFAE 478
G + +ESK+ + S + +D + FA
Sbjct: 300 NGRVMVESKKDLAKREIPSPNVADAFIMAFAP 331
>gi|213426918|ref|ZP_03359668.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
Length = 374
Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 54/342 (15%), Positives = 100/342 (29%), Gaps = 48/342 (14%)
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
+ +EA + + + + + W + + + P +D
Sbjct: 25 EGIDVLWLEEAHALTEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEDTL 83
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+I+ + + + I A D + G D + I L+ IE A++
Sbjct: 84 IRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAH 143
Query: 310 PCPD--PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEK 366
D P +G D+A+ G D V R G VI +W + +
Sbjct: 144 KVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAM 203
Query: 367 YRPDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRA------------V 404
R I+ D+ GA + V A
Sbjct: 204 ERDADIVYDSIGVGASAGAKFSEINDDRKRENAYARRVNYQRFNAGAGVHEPDDEYNGIP 263
Query: 405 DLEFCRNRRTELHVKMADWLEFA-SLINH--SGLIQNLKSL----------------KSF 445
+ +F N + + +AD + IN+ L+ L S+
Sbjct: 264 NKDFFANLKAQAWWLVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPHR 323
Query: 446 IVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 324 DFDRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 365
>gi|157265379|ref|YP_001467938.1| terminase large subunit [Thermus phage P23-45]
gi|156905274|gb|ABU96918.1| terminase large subunit [Thermus phage P23-45]
Length = 485
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/457 (15%), Positives = 144/457 (31%), Gaps = 45/457 (9%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + H +++ + + A GR GK+ + ++ + RPG +A +
Sbjct: 12 ELLGYKPHHVQLAIHRSTAK-RRVACL-GRQSGKSEAASVEAVFELFARPGSQGWIIAPT 69
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
Q + V K L E+Q +K +T +
Sbjct: 70 YDQAEIIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPVNAPGAKRVAT--SEF 127
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+ D +I DEA+ P V + I L+ R+ I T
Sbjct: 128 RGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDGWALIISTPKGLNWFY 187
Query: 236 KFYEIF--------------NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
+F+ + N+ D++ F + V ++ + R + R
Sbjct: 188 EFFLMGWRGGLKEGIPNSGVNQTHPDFESFHAASWDVWPERREWY--MERRLYIPDLEFR 245
Query: 282 VEVCGQFPQQDIDSFIPLNII----EEALNREPCPDPYAP---LIMGCDIAEEGGDN--T 332
E +F F L+++ E + Y P +G D + + +
Sbjct: 246 QEYGAEFVSHSNSVFSGLDMLILLPYERRGTRLVVEDYRPDHIYCIGADFGKNQDYSVFS 305
Query: 333 VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
V+ L G ++ L + ++ L E Y ++ D G + L+ G
Sbjct: 306 VLDLDTGAIV-CLERMNGATWSDQVARLKALSEDYGHAYVVADTWGVGDAIAEELDAQGI 364
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS--LINHSGLIQNLKSLKSFIVPNT 450
+ + + +V + N +A +E + N ++ L++ + + +
Sbjct: 365 NYTPLPVKSSSVKEQLISN--------LALLMEKGQVAVPNDKTILDELRNFRYYRTASG 416
Query: 451 GELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
++ R G D L +++ + F
Sbjct: 417 NQVM----RAYGRGHDDIVMSLALAYSQYEGKDGYKF 449
>gi|157265496|ref|YP_001468054.1| phage terminase large subunit [Thermus phage P74-26]
gi|156905391|gb|ABU97034.1| phage terminase large subunit [Thermus phage P74-26]
Length = 485
Score = 153 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/457 (15%), Positives = 144/457 (31%), Gaps = 45/457 (9%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + H +++ + + A GR GK+ + ++ + RPG +A +
Sbjct: 12 ELLGYKPHHVQLAIHRSTAK-RRVACL-GRQSGKSEAASVEAVFELFARPGSQGWIIAPT 69
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
Q + V K L E+Q +K +T +
Sbjct: 70 YDQAEIIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPVNAPGAKRVAT--SEF 127
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+ D +I DEA+ P V + I L+ R+ I T
Sbjct: 128 RGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDGWALIISTPKGLNWFY 187
Query: 236 KFYEIF--------------NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
+F+ + N+ D++ F + V ++ + R + R
Sbjct: 188 EFFLMGWRGGLKEGIPNSGINQTHPDFESFHAASWDVWPERREWY--MERRLYIPDLEFR 245
Query: 282 VEVCGQFPQQDIDSFIPLNII----EEALNREPCPDPYAP---LIMGCDIAEEGGDN--T 332
E +F F L+++ E + Y P +G D + + +
Sbjct: 246 QEYGAEFVSHSNSVFSGLDMLILLPYERRGTRLVVEDYRPDHIYCIGADFGKNQDYSVFS 305
Query: 333 VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
V+ L G ++ L + ++ L E Y ++ D G + L+ G
Sbjct: 306 VLDLDTGAIV-CLERMNGATWSDQVARLKALSEDYGHAYVVADTWGVGDAIAEELDAQGI 364
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS--LINHSGLIQNLKSLKSFIVPNT 450
+ + + +V + N +A +E + N ++ L++ + + +
Sbjct: 365 NYTPLPVKSSSVKEQLISN--------LALLMEKGQVAVPNDKTILDELRNFRYYRTASG 416
Query: 451 GELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
++ R G D L +++ + F
Sbjct: 417 NQVM----RAYGRGHDDIVMSLALAYSQYEGKDGYKF 449
>gi|289829424|ref|ZP_06547036.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 346
Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats.
Identities = 54/338 (15%), Positives = 100/338 (29%), Gaps = 48/338 (14%)
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ +EA + + + + + W + + + P +D +I
Sbjct: 1 MLWLEEAHALTEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEDTLIRKI 59
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ + + + I A D + G D + I L+ IE A++ D
Sbjct: 60 NYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLD 119
Query: 314 --PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPD 370
P +G D+A+ G D V R G VI +W + + R
Sbjct: 120 FGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAMERDA 179
Query: 371 AIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRA------------VDLEF 408
I+ D+ GA + V A + +F
Sbjct: 180 DIVYDSIGVGASAGAKFSEINDDRKRENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDF 239
Query: 409 CRNRRTELHVKMADWLEFA-SLINH--SGLIQNLKSL----------------KSFIVPN 449
N + + +AD + IN+ L+ L S+
Sbjct: 240 FANLKAQAWWLVADRFRNTFNAINNGEQYLVDELISIDSRCPLLEKLKLELTTPHRDFDR 299
Query: 450 TGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 300 NGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 337
>gi|148826888|ref|YP_001291641.1| phage terminase large subunit [Haemophilus influenzae PittGG]
gi|148718130|gb|ABQ99257.1| predicted phage terminase large subunit [Haemophilus influenzae
PittGG]
Length = 366
Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/357 (14%), Positives = 119/357 (33%), Gaps = 37/357 (10%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++ P + V+C + + ++ ++ + +L + +F++
Sbjct: 27 GGRGSGKSFSIARALVLRAYQSP-VRVLCCREIQKSISDSVIQMLADQIEMLGLRAFFDV 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + +G + ++ + + G + +E
Sbjct: 86 QKTQI-------------IGQNGSRFTFAGLKTNITSIKSMTGI-----DVVWVEEGENV 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTRTVEGID 262
++ + E + I++ NP+ + Y+ F P + K ++ +
Sbjct: 128 SKESWDILIPTIREDGSQ--IIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFP 185
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIM 320
E + D ++ R G+ + I IE A++ +
Sbjct: 186 KELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKKV 245
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+A+EG D+ G V+ + W D+ + N+ + K++ D II D+ G
Sbjct: 246 GFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVG 305
Query: 381 ARTCDYLEML--GYHVYRVLGQKRA-----------VDLEFCRNRRTELHVKMADWL 424
A + + L V + + N + + + D
Sbjct: 306 AGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRF 362
>gi|161525001|ref|YP_001580013.1| hypothetical protein Bmul_1828 [Burkholderia multivorans ATCC
17616]
gi|189350256|ref|YP_001945884.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616]
gi|160342430|gb|ABX15516.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
gi|189334278|dbj|BAG43348.1| bacteriophage TerL protein [Burkholderia multivorans ATCC 17616]
Length = 531
Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats.
Identities = 75/519 (14%), Positives = 139/519 (26%), Gaps = 73/519 (14%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
+ NP L + WG P + +
Sbjct: 26 NRIRANPSVLPALRTFYRENP--------AQFIIDWGMTFDPRNVERGLPATIPFLLFPK 77
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
G R +G + L L + G++ + E +
Sbjct: 78 QEEWCQWFMERWKAQEPGITEKTRDMGMSWLTVGLADTICLFHEGVAAGFGSRKEEYVDK 137
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
+ W + + L L PA + + + T S +
Sbjct: 138 IGSPKSLFWKAR---------EFLRLLPAEFRGSWDIGTHAPHMRIIF--PDTGSVITGE 186
Query: 183 TFVGH-HNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
+ G I DE++ + L+ R I T N S
Sbjct: 187 SGDGIGRGDRASFYIVDESAFL--ERPQLVDASLSATTNCRQDISTPNGMGNS----FAQ 240
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ K F R D +++ A LD V E+ + IP
Sbjct: 241 RRHSGKVKVFTFHWRDDPRKDDAWYAKQCAE--LDPVVVAQEIDINYAASVEGVVIPSAW 298
Query: 302 IEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTN 357
++ A+ +P G D+A+EG D R G ++ L WS D+ T
Sbjct: 299 VQAAIGAHLKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLLNFLRSWSGKGGDIYETV 358
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--------YHVYRVLGQKRAV----- 404
K G+ ++ ++ DA+ GA ++ + +
Sbjct: 359 EKTFGICDELGYESFDYDADGLGAGVRGDARVINEQRIAIGKRPINDEPFRGSGPVHDPE 418
Query: 405 --------DLEFCRNRRTELHVKMADWLE-------FASLINHSGLIQ------------ 437
+ ++ N + + + + N +I
Sbjct: 419 GEMVPERKNKDYFANLKAQSWWALRLRFQATYRAVVEGKPYNPDDIISIDPELKELAALT 478
Query: 438 NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
S ++ V G++ I K G KS + +D +M +
Sbjct: 479 MELSQPTYTVNGVGKIVI-DKAPDGTKSPNLADAVMIAY 516
>gi|307544683|ref|YP_003897162.1| hypothetical protein HELO_2093 [Halomonas elongata DSM 2581]
gi|307216707|emb|CBV41977.1| K06909 [Halomonas elongata DSM 2581]
Length = 531
Score = 150 bits (377), Expect = 7e-34, Method: Composition-based stats.
Identities = 66/446 (14%), Positives = 130/446 (29%), Gaps = 67/446 (15%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
R +G + L L + PG++V + E + K FE
Sbjct: 101 RDMGMSWLTIGLGCTVCLHHPGMAVGFGSRKEEYVDKIGSP-----------KSLFEKAR 149
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH-HNTYGMAIINDEASGTP 204
+ P T S ++ G I DE++
Sbjct: 150 SFMSMLPREFRGGWERKRHAPHMRIMFPETESVMTGESGDGIGRGDRTGFYIVDESAFLE 209
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
+ T S P + F + + F R D +
Sbjct: 210 RPHLVDASLSATTNCRQDV----STPNGMGNPFAQRRH--SGKISVFTFHWRDDPRKDDA 263
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIMGC 322
++ + LD E+ + IP ++ A++ + +
Sbjct: 264 WYAKQVDE--LDPVTVAQEIDINYSASVEGVLIPSAWVQAAVDAHKKLGIEITGERLGAL 321
Query: 323 DIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D+A+EG D R G +++ + +W+ D+ T K +++ DA+ G
Sbjct: 322 DVADEGKDQNAYAGRHGILLDLVDEWTGKGSDIFGTVQKAFDHTDEHGGSRFDYDADGLG 381
Query: 381 ARTCDYLEMLG----------YHVYRVLGQK-----------RAVDLEFCRNRRTELHVK 419
+ ++ V G + + +F N + +
Sbjct: 382 SGVRGDARVINEQRAEQKRPKLKVNPFRGSGGVIEPDKEMVPKRKNKDFFANLKAQAWWA 441
Query: 420 MADWLE--------------------FASLINHSGLIQNLKSLKSFIVPNTGELAIESKR 459
+ + + L S L+ L S ++ V TG++ + K
Sbjct: 442 LRLRFQRTYRAVVEGMEFDPDDIISIDSRLPILSKLMLEL-SQPTYHVNGTGKVVV-DKA 499
Query: 460 VKGAKSTDYSDGLMYTFAENPPRSDM 485
+G KS + +D +M +A N +D
Sbjct: 500 PEGTKSPNLADAVMILYAPNKSVTDR 525
>gi|315649222|ref|ZP_07902312.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
gi|315275441|gb|EFU38799.1| hypothetical protein PVOR_28644 [Paenibacillus vortex V453]
Length = 189
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/224 (29%), Positives = 93/224 (41%), Gaps = 45/224 (20%)
Query: 14 KLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
L DL W D + F+ ++ F P WQ + M V
Sbjct: 10 DLLDLYWDDPVA--FAEDMMGFD--------------PDDWQCDVMMDV----------- 42
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ + ++ +G+G+GKT L A LV+W + RP V+C A ++ QL LW EVSKWL
Sbjct: 43 -TQFPRTSVRSGQGVGKTGLEAALVIWFLCCRPNPKVVCTAPTKQQLHDVLWTEVSKWLE 101
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
K+ + ++ + + RT + +P+ G H Y M
Sbjct: 102 NSMVKNLLKWTKTKVYMIG------------HEQRWFATARTAN--KPENMQGFHEDY-M 146
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
I DEASG D I ILG L+ A +M NP R SG F
Sbjct: 147 LFIVDEASGVSDPIMEAILGTLS--GAENKLLMCGNPTRTSGVF 188
>gi|218290759|ref|ZP_03494841.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
LAA1]
gi|218239297|gb|EED06496.1| protein of unknown function DUF264 [Alicyclobacillus acidocaldarius
LAA1]
Length = 422
Score = 148 bits (372), Expect = 3e-33, Method: Composition-based stats.
Identities = 61/402 (15%), Positives = 129/402 (32%), Gaps = 43/402 (10%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ + H + + F+ A + GR GKT A + PG +A +
Sbjct: 16 LRLYTPHSGQVALHRSTARFRVA-TCGRRWGKTYACANEIAKWAWEHPGAMTWWVAPTYR 74
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
Q + + + + + + +
Sbjct: 75 Q----------------------TLTAYRIITRNF-HGAIEKATTTHMRIEWKSGSITEF 111
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLG-ILGFLTERNANRFWIMTSNPRRLSGKF 237
+ F ++ DEA+ P + L+++ + T R
Sbjct: 112 RSTENFDALRGEGLDFLVVDEAAMVPKEAWEAALRPTLSDKAGRAIIVSTPKGRNWFYHV 171
Query: 238 YEIFNKPL-DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ P +W+ F+ T I P E AR L SDV R E +F + F
Sbjct: 172 WARGQDPAFPEWESFRFPTLANPYIPPEEVEE--ARTTLPSDVFRQEYEAEFLEDSAGVF 229
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR-RGPVIEHLFDWSKTDLRT 355
I + +E P P ++G D+A+ + +VV+ + + +++ D
Sbjct: 230 --RGIRDCISGQEEEPQPGRRYVVGWDVAKHQDFSVLVVMDLERAHVVKMDRFNQVDYAL 287
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
++ + ++Y +++DA G + + +G A + +
Sbjct: 288 QLERVKHICQRYNNARLLMDATGVGDPLLEQVRRMGIQAEGYSLSNTA---------KQQ 338
Query: 416 LHVKMADWLEFASL--INHSGLIQNLKSLKSFIVPNTGELAI 455
L +A +E + + LI L++ + + + G +
Sbjct: 339 LIEHLAMKIERREITFPDLPVLINELQTYQ-YEITRAGNVRY 379
>gi|293604595|ref|ZP_06686998.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
gi|292817011|gb|EFF76089.1| phage terminase large subunit [Achromobacter piechaudii ATCC 43553]
Length = 463
Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 61/430 (14%), Positives = 117/430 (27%), Gaps = 59/430 (13%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GR KT + ++ + +CL + ++ +++ V E
Sbjct: 40 KGGRFSSKTQDAGGMAA-FLARNYSVRFLCLRQLQNRIADSVYTVVK------------E 86
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + V + + + E G +E G
Sbjct: 87 KIEAAGWRDEFDIGVSTIRHKLTGSEFLFYGLARNIEEIKGTEGV-----DVCWIEEGEG 141
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-QIDTRTVEGI 261
+ I + + A + + NP ++ L I+ +
Sbjct: 142 LTEEQWSIIDPTIRKEGAEVWVL--WNPHLITDFVQAKLPALLGADCIIRHINYPDNPFL 199
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLI 319
+ D D R GQ D S I + IE A++ +
Sbjct: 200 SATAKRKAERLKEADPDAYRHIYLGQPLSSDDASVIKFHWIEAAVDAHLKLGIELGGART 259
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+G D+A+ G D + G + + L +W+ + N R ++ D+
Sbjct: 260 VGYDVADSGADKNACSVFDGAICDELDEWAAPED-ELNQSTKRAWAHVRNGILVYDSIGV 318
Query: 380 GARTCDYLEMLGYHVYRVLGQ-------------KRAVDLEFCRNRRTELHVKMADWLEF 426
GA L G + + E N + + +AD L
Sbjct: 319 GAHVGSTLADAGIRTGYHKFNAGGAVISPDKEYAPKIKNKEKFENLKAQAWQDVADRLRN 378
Query: 427 -------ASLINHSGLI---------QNL---KSLKSFIVPNTGELAIESKR---VKGAK 464
+ S LI + L S G +E+K +G
Sbjct: 379 TYNAVTKGMVFPASELISISSGISKLEQLKIELSAPRKRYSKRGLDMVETKEDMARRGIP 438
Query: 465 STDYSDGLMY 474
S + +D +
Sbjct: 439 SPNLADSFIM 448
>gi|163716617|gb|ABY40529.1| putative TerL [Burkholderia phage Bups phi1]
Length = 531
Score = 145 bits (364), Expect = 2e-32, Method: Composition-based stats.
Identities = 77/523 (14%), Positives = 144/523 (27%), Gaps = 73/523 (13%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
+ + NP L + WG P + +
Sbjct: 26 QRIRANPGVLPALRAFYRDNP--------AQFIIDWGMTFDPRNVERGLPATIPFLLFPK 77
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
+ G R +G + L L + G++ + E +
Sbjct: 78 QEDWIAWFMERWRAREPGITEKTRDMGMSWLTVGLADTVCLFHEGVAAGFGSRKEEYVDK 137
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
+ W + + L L PA + + + T S +
Sbjct: 138 IGSPKSLFWKAR---------EFLRLLPAEFRGSWDIGTHAPHMRIIF--PDTGSVITGE 186
Query: 183 TFVGH-HNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
+ G + DE++ + L+ R I T N S
Sbjct: 187 SGDGIGRGDRASFYVVDESAFL--ERPQLVDASLSATTNCRQDISTPNGMGNS----FAQ 240
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ K F R D +++ +A LD V E+ + IP
Sbjct: 241 RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEIDINYAASVEGVVIPSAW 298
Query: 302 IEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTN 357
++ AL +P G D+A+EG D R G ++EHL WS D+ T
Sbjct: 299 VQAALGAHVKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLLEHLESWSGVGGDIFGTV 358
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--------YHVYRVLGQKRAV----- 404
+++ G+ + + DA+ GA +L + +
Sbjct: 359 DRVLGICDVRDYEVFDYDADGLGAGVRGDARVLNEQRVAAGKRSIRNEPFRGSGPVYDPE 418
Query: 405 --------DLEFCRNRRTELHVKMADWLE-------FASLINHSGLIQ------------ 437
+ ++ N + + + + + +I
Sbjct: 419 GEMVKERKNKDYFANLKAQSWWALRLRFQATYRAVVEGKPFDPDEIISIDPDLPERAALS 478
Query: 438 NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
S +F V G++ I K G KS + +D +M +
Sbjct: 479 MELSQPTFTVNGVGKIVI-DKAPDGTKSPNLADAVMIAYQPAV 520
>gi|284008456|emb|CBA74928.1| phage terminase large subunit [Arsenophonus nasoniae]
Length = 477
Score = 144 bits (362), Expect = 4e-32, Method: Composition-based stats.
Identities = 67/459 (14%), Positives = 123/459 (26%), Gaps = 82/459 (17%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG KT A + L S +CL ++ ++ A + + L ++ F +
Sbjct: 21 GGRGGMKTVSFAKIALITASINK-RRFLCLREFMNSIEDSVHAVLQAEIETLRLQNRFRI 79
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + H +EA
Sbjct: 80 LD--------------NCIKGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 121
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLS----------GKFYEIFNKPLDDWKRFQI 253
+ ++ + + + ++ + + DD ++
Sbjct: 122 SEKSLDILIPTIRKPGSELWFSFNPAEEDGAVYKRFVKPYKDIIDDKGYYEDDDLYVGKV 181
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP- 312
+ + G+ D+ I ++ A++
Sbjct: 182 SYLDNPWLPEELKNDAEKMKRDNYKKWLHVYGGECDANYDDAIIQPEWVDAAIDAHIKLG 241
Query: 313 -DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
P ++ D A+ G D + R G ++E WS+ D+ K YR D
Sbjct: 242 FKPKGIRVITFDPADSGQDEKALSKRYGVLVEDCVSWSEGDVADATIKAFDEAFDYRADD 301
Query: 372 IIIDANNTGARTCDYLEML----------------------------GYHVYRVLGQKRA 403
I D GA T L
Sbjct: 302 FIYDNIGLGAGTVKTYLRSSNDGNKMVVTGFGAGDSPDYPDEIYVPGNGEYIPSLNNDDR 361
Query: 404 VDLEFCRNRRTELHVKMADWL-------EFASLINHSGLI-------------QNLKSLK 443
+ + RN+R + V +AD E I+ LI L +
Sbjct: 362 TNRDTFRNKRAQYWVYLADRFYKTWCAVEKKEYIDPEELISLSSKIDKLSQLKSELVKQQ 421
Query: 444 SFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
P + + SK R KG KS + +D LM +FA
Sbjct: 422 RKRTPGNRLIQLISKEEMRSKGIKSPNMADTLMMSFANP 460
>gi|167725769|ref|ZP_02409005.1| hypothetical protein BpseD_42528 [Burkholderia pseudomallei DM98]
Length = 517
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 77/523 (14%), Positives = 143/523 (27%), Gaps = 73/523 (13%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
+ + NP L + WG P + +
Sbjct: 12 QRIRANPGVLPALRAFYRDNP--------AQFIIDWGMTFDPRNVERGLPATIPFLLFPK 63
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
+ G R +G + L L + G++ + E +
Sbjct: 64 QEDWIAWFMERWRAREPGITEKTRDMGMSWLTVGLADTVCLFHEGVAAGFGSRKEEYVDK 123
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
+ W + + L L PA + + + T S +
Sbjct: 124 IGSPKSLFWKAR---------EFLRLLPAEFRGSWDIGTHAPHMRIIF--PDTGSVITGE 172
Query: 183 TFVGH-HNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
+ G + DE++ + L+ R I T N S
Sbjct: 173 SGDGIGRGDRASFYVVDESAFL--ERPQLVDASLSATTNCRQDISTPNGMGNS----FAQ 226
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ K F R D +++ +A LD V E+ + IP
Sbjct: 227 RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEIDINYAASVEGVVIPSAW 284
Query: 302 IEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTN 357
++ AL +P G D+A+EG D R G ++EHL WS D+ T
Sbjct: 285 VQAALGAHVKLGIEPSGTRRGGLDVADEGKDKNAFAGRYGFLLEHLESWSGVGGDIFGTV 344
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--------YHVYRVLGQKRAV----- 404
++ G+ + + DA+ GA +L + +
Sbjct: 345 DRALGICDVRDYEVFDYDADGLGAGVRGDARVLNEQRVAAGKRSIRNEPFRGSGPVYDPE 404
Query: 405 --------DLEFCRNRRTELHVKMADWLE-------FASLINHSGLIQ------------ 437
+ ++ N + + + + + +I
Sbjct: 405 GEMVKERKNKDYFANLKAQSWWALRLRFQATYRAVVEGKPFDPDEIISIDPDLPERAALS 464
Query: 438 NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
S +F V G++ I K G KS + +D +M +
Sbjct: 465 MELSQPTFTVNGVGKIVI-DKAPDGTKSPNLADAVMIAYQPAV 506
>gi|211731737|gb|ACJ10086.1| terminase [Bacteriophage APSE-5]
Length = 469
Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 76/461 (16%), Positives = 133/461 (28%), Gaps = 86/461 (18%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG KT A + L S +CL ++ ++ A + + L ++ F +
Sbjct: 12 GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQNRFRI 70
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + H +EA
Sbjct: 71 LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP------------LDDWKRF 251
+ ++ + + + ++ NP G Y+ F KP DD
Sbjct: 113 SEKSLDTLIPTIRKPGSELWFSF--NPAEEDGAVYKRFVKPYKELIDTQGYYEDDDLYVG 170
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
++ + + R G+ D+ I +E A++
Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230
Query: 312 P--DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P ++ D A+ G D + R G +IE WS+ D+ YR
Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATMTAFDEAFDYRA 290
Query: 370 DAIIIDANNTGARTC------------------------DYLEML----GYHVYRVLGQK 401
D I D GA T DY + +
Sbjct: 291 DDFIYDNIGLGAGTVKTHLRHSNDGNKIVVTGFGAGDSPDYPDEIYVPGNGEYLPSSNND 350
Query: 402 RAVDLEFCRNRRTELHVKMADWL-------EFASLINHSGLI-------------QNLKS 441
+ RN+R + V +AD E ++ LI L
Sbjct: 351 DRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPEALISLSSKIAKLSQLKSELIK 410
Query: 442 LKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
+ P + + SK R+KG KS + +D LM +FA
Sbjct: 411 QQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|212499721|ref|YP_002308529.1| terminase [Bacteriophage APSE-2]
gi|238898754|ref|YP_002924436.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
gi|211731690|gb|ACJ10178.1| terminase [Bacteriophage APSE-2]
gi|229466514|gb|ACQ68288.1| APSE-2 prophage; terminase [Bacteriophage APSE-2]
Length = 469
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 76/461 (16%), Positives = 133/461 (28%), Gaps = 86/461 (18%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG KT A + L S +CL ++ ++ A + + L ++ F +
Sbjct: 12 GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQNRFRI 70
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + H +EA
Sbjct: 71 LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP------------LDDWKRF 251
+ ++ + + + ++ NP G Y+ F KP DD
Sbjct: 113 SEKSLDTLIPTIRKPGSELWFSF--NPAEEDGAVYKRFVKPYKAIIDKQGYYEDDDLYVG 170
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
++ + + R G+ D+ I +E A++
Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230
Query: 312 P--DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P ++ D A+ G D + R G +IE WS+ D+ YR
Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATMTAFDEAFDYRA 290
Query: 370 DAIIIDANNTGARTC------------------------DYLEML----GYHVYRVLGQK 401
D I D GA T DY + +
Sbjct: 291 DDFIYDNIGLGAGTVKTHLRHSNDGNKIVVTGFGAGDSPDYPDEIYVPGNGEYLPSSNND 350
Query: 402 RAVDLEFCRNRRTELHVKMADWL-------EFASLINHSGLI-------------QNLKS 441
+ RN+R + V +AD E ++ LI L
Sbjct: 351 DRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPEALISLSSKIAKLSQLKSELIK 410
Query: 442 LKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
+ P + + SK R+KG KS + +D LM +FA
Sbjct: 411 QQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|211731806|gb|ACJ10127.1| terminase [Bacteriophage APSE-3]
Length = 469
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 76/461 (16%), Positives = 133/461 (28%), Gaps = 86/461 (18%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG KT A + L S +CL ++ ++ A + + L ++ F +
Sbjct: 12 GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQNRFRI 70
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + H +EA
Sbjct: 71 LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP------------LDDWKRF 251
+ ++ + + + ++ NP G Y+ F KP DD
Sbjct: 113 SEKSLDTLIPTIRKPGSELWFSF--NPAEEDGAVYKRFVKPYKAIIDKQGYYEDDDLYVG 170
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
++ + + R G+ D+ I +E A++
Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230
Query: 312 P--DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P ++ D A+ G D + R G +IE WS+ D+ YR
Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATMTAFDEAFDYRA 290
Query: 370 DAIIIDANNTGARTC------------------------DYLEML----GYHVYRVLGQK 401
D I D GA T DY + +
Sbjct: 291 DDFIYDNIGLGAGTVKTHLRHGNDGNKMVVTGFGAGDSPDYPDEIYVPGNGEYLPSSNND 350
Query: 402 RAVDLEFCRNRRTELHVKMADWL-------EFASLINHSGLI-------------QNLKS 441
+ RN+R + V +AD E ++ LI L
Sbjct: 351 DRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPEALISLSSKIAKLSQLKSELIK 410
Query: 442 LKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
+ P + + SK R+KG KS + +D LM +FA
Sbjct: 411 QQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|238027169|ref|YP_002911400.1| hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1]
gi|237876363|gb|ACR28696.1| Hypothetical protein bglu_1g15550 [Burkholderia glumae BGR1]
Length = 531
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 77/519 (14%), Positives = 142/519 (27%), Gaps = 73/519 (14%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
+ + NP L + WG P + +
Sbjct: 26 QRIRANPGVLPALRAFYRDNP--------AQFIIDWGMTFDPRNVERGLPATIPFLLFPK 77
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
+ G R +G + L L + G++ + E +
Sbjct: 78 QEDWIAWFMERWRAREPGITEKTRDMGMSWLTVGLADTICLFHEGVAAGFGSRKEEYVDK 137
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
+ W + + L L PA + + + T S +
Sbjct: 138 IGSPKSLFWKAR---------EFLRLLPAEFRGSWDIGTHAPHMRIIF--PDTGSVITGE 186
Query: 183 TFVGH-HNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
+ G + DE++ + L+ R I T N S
Sbjct: 187 SGDGIGRGDRASFYVVDESAFL--ERPQLVDASLSATTNCRQDISTPNGMGNS----FAQ 240
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ K F R D +++ +A LD V E+ + IP
Sbjct: 241 RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAE--LDPVVVAQEIDINYAASVEGVVIPSAW 298
Query: 302 IEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTN 357
++ AL P G D+A+EG D R G ++EHL WS D+ T
Sbjct: 299 VQAALGAHVKLGISPSGARRGGLDVADEGKDKNAFAGRYGFLLEHLESWSGVGGDIFGTV 358
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG--------YHVYRVLGQKRAV----- 404
++ G+ + + DA+ GA +L + +
Sbjct: 359 DRALGICDVRGYEVFDYDADGLGAGVRGDARVLNEQRAAAGKRSIRSEPFRGSGPVYDPD 418
Query: 405 --------DLEFCRNRRTELHVKMADWLE-------FASLINHSGLIQ------------ 437
+ ++ N + + + + + +I
Sbjct: 419 GEMVKERKNKDYFANLKAQSWWALRLRFQATYRAVVEGKPFDPDEIISIDPDLPERAALS 478
Query: 438 NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
S +F V G++ I K G KS + +D +M +
Sbjct: 479 MELSQPTFTVNGVGKIVI-DKAPDGTKSPNLADAVMIAY 516
>gi|330910791|gb|EGH39301.1| phage terminase, large subunit [Escherichia coli AA86]
Length = 540
Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 73/534 (13%), Positives = 154/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWGNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRDDPRKDEEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 VLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + K+ G E+ + D + GA +
Sbjct: 353 SDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + ++ + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTYRAVVEGMAYNPDEII 472
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ + K+ G KS + +D +M ++A
Sbjct: 473 SISSAMASKDKLIIELSQPTYSINGVGKIVV-DKQPDGTKSPNLADSVMISYAP 525
>gi|326783331|ref|YP_004323723.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn33]
gi|310005278|gb|ADO99667.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn33]
Length = 549
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/457 (14%), Positives = 142/457 (31%), Gaps = 68/457 (14%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVL-HFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHC 66
+PE Q+ + +F+L + + +Q++ ++ +
Sbjct: 23 SPEEVQEYL------KCADDPVHFILNYIKIVSLDEGVIPFTMY--DFQVDMVKSFHDNR 74
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
N P R GK+T+ +LW + P ++V LAN + L
Sbjct: 75 FNIAKLP------------RQSGKSTIVTAYLLWYVLFNPNVNVAILANKAATAREML-- 120
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
+ ++L SL +++ T +
Sbjct: 121 ----------GRLQLSYENLPKWLQQGILQWNRGSLELENGSKILAAST-------SASA 163
Query: 187 HHNTYGMAIINDEASGTP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIF 241
I DE + P D + ++ + I T + + K +
Sbjct: 164 VRGMSFNVIFLDEFAFVPNHIADQFFSSVYPTVSSGKSTKVIIISTPHGMNMFYKLWHDA 223
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ +++ ++ V G D ++ E I +VE +F D+ I +
Sbjct: 224 EQGKNEYLPTEVHWSQVPGRDAAWKEQTIKNTSE--QQFKVEFECEFLGSV-DTLISPSK 280
Query: 302 IEEALNREP-----------CPDPYAPLIMGCDIAEE-GGDNTVVVLRRG----PVIEHL 345
+ +P + I+ D++ G D + V+ +
Sbjct: 281 LRTMPYVDPVAQNKGLAIYERVEAEHNYIITVDVSRGIGNDYSAFVVVDTTTMPYKVVAR 340
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQK 401
+ ++ N I + + Y I+ + N+ G + D LE + + G+
Sbjct: 341 YRNNEIKPIIFPNIIIDVAKNYNNAYILCEVNDIGGQVADIIQFDLEYENLLMAAMRGRA 400
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
+ ++T+L VKM+ ++ N LI+
Sbjct: 401 GQQLGQGFSGKKTQLGVKMSSAVKQVGCSNLKALIEE 437
>gi|323173153|gb|EFZ58784.1| gp33 TerL protein [Escherichia coli LT-68]
Length = 539
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/534 (13%), Positives = 154/534 (28%), Gaps = 93/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWSNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYFVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMN 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R+ D ++ + + + E+ +
Sbjct: 236 NPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKID-NPVIVAQELDLNYQASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT- 351
IP ++ A++ P + D+A+EG D LR G ++ + +WS
Sbjct: 293 ILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGKG 352
Query: 352 -DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
D+ + K+ GL + + D D + GA +
Sbjct: 353 SDIYDSVVKVFGLCDDFGADEFRFDEDGLGAGVRGDARAINELREAEGICQITATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF----------------- 426
V G+ ++ +F N + + +
Sbjct: 413 GSVFHPENEAVPGDNGKPARLNKDFFVNAKAQGWWHLRKLFRNTFRALQGMEYDPDEIIS 472
Query: 427 --ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ N L+ L S ++ TG++ + K+ G KS + +D +M +A
Sbjct: 473 ISSTMENKDRLLMEL-SQPTWSKNATGKILV-DKQPDGTKSPNLADSVMIAYAP 524
>gi|300824951|ref|ZP_07105051.1| conserved hypothetical protein [Escherichia coli MS 119-7]
gi|300522580|gb|EFK43649.1| conserved hypothetical protein [Escherichia coli MS 119-7]
Length = 540
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/534 (13%), Positives = 153/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWSNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRDDPRKDEEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 VLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + KI G E+ + D + GA +
Sbjct: 353 SDIYQSVEKIFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + ++ + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEII 472
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ I K+ G +S + +D +M +A
Sbjct: 473 SISSSMALKDKLIIELSQPTYSINGVGKIVI-DKQPDGTRSPNLADSVMINYAP 525
>gi|332088044|gb|EGI93169.1| gp33 TerL [Shigella boydii 5216-82]
Length = 539
Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 74/534 (13%), Positives = 154/534 (28%), Gaps = 93/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWSNRENGITDK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYFVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMN 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R+ D ++ + + + E+ +
Sbjct: 236 NPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKID-NPVIVAQELDLNYQASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT- 351
IP ++ A++ P + D+A+EG D LR G ++ + +WS
Sbjct: 293 ILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGKG 352
Query: 352 -DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
D+ + K+ GL + + D D + GA +
Sbjct: 353 SDIYDSVVKVFGLCDDFGADEFRFDEDGLGAGVRGDARAINELREAEGICQITATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF----------------- 426
V G+ ++ +F N + + +
Sbjct: 413 GSVFHPENEAVPGDNGKPARLNKDFFVNAKAQGWWHLRKLFRNTFRALQGMEYDPDEIIS 472
Query: 427 --ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ N L+ L S ++ TG++ + K+ G KS + +D +M +A
Sbjct: 473 ISSTMENKDRLLMEL-SQPTWSKNATGKILV-DKQPDGTKSPNLADSVMIAYAP 524
>gi|254160843|ref|YP_003043951.1| hypothetical protein ECB_00733 [Escherichia coli B str. REL606]
gi|253972744|gb|ACT38415.1| conserved hypothetical protein [Escherichia coli B str. REL606]
Length = 540
Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats.
Identities = 73/534 (13%), Positives = 153/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWGNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRDDPRKDEEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 VLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + K+ G E+ + D + GA +
Sbjct: 353 SDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNVARRPSILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + ++ + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEII 472
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ I K+ G +S + +D +M +A
Sbjct: 473 SISSSMALKDKLIIELSQPTYSINGVGKIVI-DKQPDGTRSPNLADSVMINYAP 525
>gi|149174861|ref|ZP_01853485.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797]
gi|148846198|gb|EDL60537.1| hypothetical protein PM8797T_10814 [Planctomyces maris DSM 8797]
Length = 568
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 79/532 (14%), Positives = 149/532 (28%), Gaps = 141/532 (26%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + +E + + + + G GK +I
Sbjct: 57 DDWQWDILESLFD----------LTIRRVFVKGNTGCGKGAAAGIACCTYFHIWNDAKII 106
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+S + + EV KW + K ++ + + +S L
Sbjct: 107 ITRDSVRTAQKIAFGEVDKWWRKMRFKPPGKLLTSGVFDNNQHSISL------------- 153
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN-RFWIMTSNP 230
+ + + F G H+ + + + N + ++ SNP
Sbjct: 154 ----ANPQHIEGFRGAHSPHVFFWF-------DEATAPNLEDKYKLANTQAKKFLALSNP 202
Query: 231 RRLSGKFYEIFNKPLDD-----------WKRFQIDTRTVEGIDPSFHEGIIARYG----- 274
LSG F + F D + + + E +A G
Sbjct: 203 STLSGTFRDSFPVVNPDKTQTIIDQYGNTRCITVSGWECTNVKEKCLEQPVAPIGGIKIS 262
Query: 275 -------------------------------------LDSDVTRVEVCGQFPQQDID-SF 296
D + V G+FP QD D
Sbjct: 263 DNYYPHGSPIAADDFEKVQPRIPGQTCYDEFMALLNDADPLIRNVYALGKFPDQDPDKQV 322
Query: 297 IPLNIIEEALNREPCP-------------------DPYAPLI-MGCDIAEEG-GDNTVVV 335
I + + E + + P+ G D+A GD +V+
Sbjct: 323 ILPDWLIEPVKFWTRWNRLCLRAREQFHILALKLLEQILPVEGFGLDVAASRFGDASVLA 382
Query: 336 LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD------AIIID-ANNTGARTCDYLE 388
+ I + + +D + T + + + D I ID G D L+
Sbjct: 383 VGGRYGIRAIHECQFSDTQQTMSWVLETANSHGVDLEQGIVPIAIDWGGGYGNAVGDPLK 442
Query: 389 MLGYHVYRVLGQKRA-VDLEFCRNRRTELHVKMADWLEFAS--------LINHSGLIQNL 439
+V + G + +D + N+R EL+ + A L+ A L ++ L L
Sbjct: 443 KRNVNVIEIHGNASSNLDSKKYANKRAELYGEAARRLDPAGDFRMMPFALPDNQRLKAEL 502
Query: 440 KSLKSFIVPNTG-ELAIESKRVKG--------------AKSTDYSDGLMYTF 476
+ + + G + I K +G +S D +D ++Y
Sbjct: 503 VAPEKIYAGHDGEKYYITPKGRRGSDANYNGKTLHEILGRSPDRADAVVYCL 554
>gi|238790716|ref|ZP_04634478.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641]
gi|238721211|gb|EEQ12889.1| Gp33 TerL [Yersinia frederiksenii ATCC 33641]
Length = 538
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 78/514 (15%), Positives = 141/514 (27%), Gaps = 92/514 (17%)
Query: 25 KLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPE 76
K + + F++ WG E+G P Q E++E N+ +
Sbjct: 43 KDNPAQFII---DWGMTVDPRNVERGLPARIPFLLFPKQEEWIEWFVDRWRNAEPGITEK 99
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
R +G + L + L G+ + E +
Sbjct: 100 T--------RDMGMSWLTVGMASSLCLFNRGVFAGFGSRKEEYVDKIGSP---------- 141
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH-HNTYGMAI 195
K F+ + P T S + G
Sbjct: 142 -KSLFDKARNFISLLPTEFRGGWSLKQHAPHMRILFPETESAMTGEAGDGIGRGDRTSFY 200
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
I DE++ + T S P ++ F E + K F
Sbjct: 201 IVDESAFLERPYLVDASLSATTNCRQDV----STPNGMANSFAERRH--SGKIKVFTFHW 254
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP--CPD 313
R D ++++ + LD E+ + IP ++ A+N
Sbjct: 255 RDDPRKDDAWYQKQVEN--LDPVTVAQEIDINYSASVEGVLIPSAWVQAAINAHEVLGIV 312
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKYRPDA 371
P + DIA+EG D R G ++E + +WS D+ T K + + +
Sbjct: 313 PTGQRLGALDIADEGKDTNSFAGRHGFLLESIEEWSGKGDDIFGTVQKAFDICDAQNLET 372
Query: 372 IIIDANNTGARTCDYLEMLGYH---------------------------VYRVLGQKRAV 404
D + GA ++ V GQ+ +
Sbjct: 373 FRFDTDGLGAGARGDARVINEQREEQRRRHIVATPFRGSGGVTDPDDEAVPGDNGQQGRL 432
Query: 405 DLEFCRNRRTELHVKMADWL--------EFASLINHS------------GLIQNLKSLKS 444
+ +F N + + + E L L S +
Sbjct: 433 NKDFFANAKAQGWWSLRTRFQKTYRAVKENMEFDPDEIISIPKDLKNLTKLTSEL-SQPT 491
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ V G++ + K+ G KS + +D M +A
Sbjct: 492 YSVNGVGKIVV-DKKPDGTKSPNLADSAMILYAP 524
>gi|167553969|ref|ZP_02347711.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205321713|gb|EDZ09552.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
Length = 539
Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 73/534 (13%), Positives = 156/534 (29%), Gaps = 93/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + PET L ++ WG + G P+
Sbjct: 26 QRIRKAPETLPALRQFYRTNP--------AQFIIDWGMTTDPRNLDYGLPVTIPFLLFPR 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E+++ + N N + R +G + + L L + + +
Sbjct: 78 QEEWIDWIMERSRNHENGLTEK--------SREMGLSWTSVGLASALCLFNREMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T+ + W F + W + ++ + +
Sbjct: 130 RKEEYVDSTVDPKALFW-----KVRKFIATLPAEFRGGWDERKHSRFMSVEFPDTGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYFVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMN 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R+ D ++ + + + E+ +
Sbjct: 236 NPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKID-NPIIVAQELDLNYQASTEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT- 351
IP ++ A++ P + D+A+EG D LR G ++ + +WS
Sbjct: 293 ILIPSEWVQAAVDAHIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEWSGKG 352
Query: 352 -DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
D+ + K+ GL + + D D + GA +
Sbjct: 353 SDIYDSVVKVFGLCDDFGADEFRFDEDGLGAGVRGDARAINELREAEGTDQITATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF----------------- 426
V G+ ++ +F N + + +
Sbjct: 413 GSVFYPENEAVPGDNGKPSRLNKDFFANAKAQGWWHLRKLFRNTFRALKGMEYDPDEIIS 472
Query: 427 --ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ N L+ L S ++ G++ + K+ G KS + +D +M +A
Sbjct: 473 ISSTMENKDRLLMEL-SQPTWSKNAVGKILV-DKQPDGTKSPNLADSVMIAYAP 524
>gi|191172603|ref|ZP_03034142.1| gp33 TerL [Escherichia coli F11]
gi|190907076|gb|EDV66676.1| gp33 TerL [Escherichia coli F11]
gi|324014340|gb|EGB83559.1| hypothetical protein HMPREF9533_01599 [Escherichia coli MS 60-1]
Length = 540
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 72/534 (13%), Positives = 152/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIYWIMERWGNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRDDPRKDEEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 VLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + + G E+ + D + GA +
Sbjct: 353 SDIYQSVENVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + ++ + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEII 472
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ I K+ G +S + +D +M +A
Sbjct: 473 SISSSMALKDKLIIELSQPTYSINGVGKIVI-DKQPDGTRSPNLADSVMINYAP 525
>gi|218555117|ref|YP_002388030.1| hypothetical protein ECIAI1_2647 [Escherichia coli IAI1]
gi|218361885|emb|CAQ99485.1| conserved hypothetical protein from bacteriophage origin
[Escherichia coli IAI1]
Length = 540
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 73/534 (13%), Positives = 153/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPVLKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWGNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRDDPRKDEEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 VLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLMENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + K+ G E+ + D + GA +
Sbjct: 353 SDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + ++ + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEII 472
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ I K+ G +S + +D +M +A
Sbjct: 473 SISSSMALKDKLIIELSQPTYSINGVGKIVI-DKQPDGTRSPNLADSVMINYAP 525
>gi|188494674|ref|ZP_03001944.1| gp33 TerL [Escherichia coli 53638]
gi|188489873|gb|EDU64976.1| gp33 TerL [Escherichia coli 53638]
Length = 539
Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats.
Identities = 74/534 (13%), Positives = 155/534 (29%), Gaps = 93/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWSNRENGITDK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMN 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R+ D ++ + + + E+ +
Sbjct: 236 NPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKID-NPVIVAQELDLNYQASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT- 351
IP ++ A++ P + D+A+EG D LR G ++ + +WS
Sbjct: 293 ILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGKG 352
Query: 352 -DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
D+ + K+ GL + + D D + GA +
Sbjct: 353 SDIYDSVVKVFGLCDDFGADEFRFDEDGLGAGVRGDARAINELREAEGICQITATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF----------------- 426
V G+ ++ +F N + + +
Sbjct: 413 GSVFHPENEAVPGDNGKPARLNKDFFVNAKAQGWWHLRKLFRNTFRALQGMEYDPDEIIS 472
Query: 427 --ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ N L+ L S ++ TG++ + K+ G KS + +D +M +A
Sbjct: 473 ISSTMENKDRLLMEL-SQPTWSKNATGKILV-DKQPDGTKSPNLADSVMIAYAP 524
>gi|194430118|ref|ZP_03062621.1| gp33 TerL [Escherichia coli B171]
gi|215487586|ref|YP_002330017.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|260845222|ref|YP_003223000.1| putative terminase large subunit [Escherichia coli O103:H2 str.
12009]
gi|194411828|gb|EDX28147.1| gp33 TerL [Escherichia coli B171]
gi|215265658|emb|CAS10061.1| predicted terminase, large subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|257760369|dbj|BAI31866.1| predicted terminase large subunit [Escherichia coli O103:H2 str.
12009]
gi|309702924|emb|CBJ02255.1| putative phage gp33 TerL [Escherichia coli ETEC H10407]
gi|323159191|gb|EFZ45181.1| gp33 TerL [Escherichia coli E128010]
Length = 540
Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats.
Identities = 73/534 (13%), Positives = 153/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPVLKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWGNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRDDPRKDEEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 VLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + K+ G E+ + D + GA +
Sbjct: 353 SDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + ++ + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEII 472
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ I K+ G +S + +D +M +A
Sbjct: 473 SISSSMALKDKLIIELSQPTYSINGVGKIVI-DKQPDGTRSPNLADSVMINYAP 525
>gi|324114526|gb|EGC08494.1| hypothetical protein ERIG_00518 [Escherichia fergusonii B253]
Length = 540
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 73/534 (13%), Positives = 155/534 (29%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + + +
Sbjct: 78 QEEWIHWIMERWGNRENGITEK--------SREMGLSWTAIGLACSLCLFKKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRDDPRKDEEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 VLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + K+ G E+ + D + GA +
Sbjct: 353 SDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + ++ + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEII 472
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + + G++ I K+ G +S + +D +M +A
Sbjct: 473 SISSSMALKDKLIIELSQPTYSINSVGKIVI-DKQPDGTRSPNLADSVMINYAP 525
>gi|291283815|ref|YP_003500633.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str.
CB9615]
gi|290763688|gb|ADD57649.1| hypothetical protein G2583_3121 [Escherichia coli O55:H7 str.
CB9615]
Length = 540
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 74/534 (13%), Positives = 154/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWGNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRDDPRKDEEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 VLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + K+ G E+ + D + GA +
Sbjct: 353 SDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + ++ + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNPDEII 472
Query: 437 -----QNL-------KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
L S ++ + G++ I K+ G +S + +D +M +A
Sbjct: 473 SISSSMALKDKLIIALSQPTYSINGVGKIVI-DKQPDGTRSPNLADSVMINYAP 525
>gi|9633565|ref|NP_050979.1| P18 [Acyrthosiphon pisum bacteriophage APSE-1]
gi|6118013|gb|AAF03961.1|AF157835_18 P18 [Endosymbiont phage APSE-1]
Length = 469
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 76/461 (16%), Positives = 132/461 (28%), Gaps = 86/461 (18%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG KT A + L S +CL ++ + A + + L ++ F +
Sbjct: 12 GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSGHAVLQAEVETLGLQNRFRI 70
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + H +EA
Sbjct: 71 LNT--------------YIEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP------------LDDWKRF 251
+ ++ + + + ++ NP G Y+ F KP DD
Sbjct: 113 SEKSLDSLIPTIRKPGSELWFSF--NPAEEDGAVYKRFVKPYKELIDTQGYYEDDDLYVG 170
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
++ + + R G+ D+ I +E A++
Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIK 230
Query: 312 P--DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P ++ D A+ G D + R G +IE WS+ D+ YR
Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATMTAFDDAFDYRA 290
Query: 370 DAIIIDANNTGARTC------------------------DYLEML----GYHVYRVLGQK 401
D I D GA T DY + +
Sbjct: 291 DDFIYDNIGLGAGTVKTHLRHSNDGNKMVVTGFGAGDSPDYPDEIYVPGNGEYLPSSNND 350
Query: 402 RAVDLEFCRNRRTELHVKMADWL-------EFASLINHSGLI-------------QNLKS 441
+ RN+R + V +AD E ++ LI L
Sbjct: 351 DRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPDALISLSSKIAKLSQLKSELIK 410
Query: 442 LKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
+ P + + SK R+KG KS + +D LM +FA
Sbjct: 411 QQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|255321082|ref|ZP_05362250.1| gp33 TerL [Acinetobacter radioresistens SK82]
gi|262379515|ref|ZP_06072671.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164]
gi|255301852|gb|EET81101.1| gp33 TerL [Acinetobacter radioresistens SK82]
gi|262298972|gb|EEY86885.1| bacteriophage TerL protein [Acinetobacter radioresistens SH164]
Length = 558
Score = 141 bits (354), Expect = 3e-31, Method: Composition-based stats.
Identities = 69/473 (14%), Positives = 131/473 (27%), Gaps = 82/473 (17%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT-----LWAEVSKWLSLLP 136
I R G + + L G + + E + L + S LP
Sbjct: 107 IEKSRDEGMSYVVLGFYLHRWLFVEGFAGGVGSRKEDLVDKKGDPKTLLHKFRDMYSKLP 166
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ P + V + I + + +
Sbjct: 167 AW---------MKPKGFIEKVHDNYMRIINPDNGATVTGEAGDNIG-----RGGRTTMYF 212
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
DE + + ++ I S P + KF++ + + F + R
Sbjct: 213 LDEWAFV--ERQEAVDAAIS--QNTNVHIKGSTPNGIGDKFHQD--RFSGRYAVFTMAWR 266
Query: 257 TVEG------IDPSFHEGIIARY--GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
+D + LD V EV + IP ++ A++
Sbjct: 267 DNPDKNWQVELDGKLIYPWYEKQLATLDDIVLAQEVDIDYAASVEGVLIPSAWVQAAVDA 326
Query: 309 EPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLV 364
+P D+A+EG D R G V+++L WS D+ T K
Sbjct: 327 HIKLGIEPSGERNGALDVADEGKDKNSFAARHGIVLQYLDTWSGIGDDIFGTTQKAIDAC 386
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRAVDLE------- 407
+ + DA+ GA ++ G + E
Sbjct: 387 LDLKLNIFFYDADGLGAGVRGDARVINELNKAKGIPEIEANPFRGSGAVHNPEQEMVEAR 446
Query: 408 ----FCRNRRTELHVKMADWLEF------ASLINHSGLI---------------QNLKSL 442
F N + ++ + + + LI + S
Sbjct: 447 KNVDFFANLKAQMWWSLRLRFQNTYRALQGMQYDPDSLISLSTKDINKQELEQLKRELSQ 506
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE--NPPRSDMDFGRCPSY 493
++ G++ + +K+ GA S + +DG+M F++ P R G +
Sbjct: 507 PTYSKNGAGKILV-NKQPDGALSPNRADGVMICFSDIRPPARLIPGGGGTRRF 558
>gi|168820654|ref|ZP_02832654.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|205342611|gb|EDZ29375.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
Length = 539
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 73/534 (13%), Positives = 156/534 (29%), Gaps = 93/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + PET L ++ WG + G P+
Sbjct: 26 QRIRKAPETLPALRQFYRTNP--------AQFIIDWGMTTDPRNLDYGLPVTIPFLLFPR 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E+++ + N N + R +G + + L L + + +
Sbjct: 78 QEEWIDWIMERSRNHENGLTEK--------SREMGLSWTSVGLASALCLFNREMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T+ + W F + W + ++ + +
Sbjct: 130 RKEEYVDSTVDPKALFW-----KVRKFIATLPAEFRGGWDERKHSRFMSVEFPDTGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYFVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMN 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R+ D ++ + + + E+ +
Sbjct: 236 NPFAQKRH--SGKISVFTFHWRSDPRKDDEWYRKECEKID-NPIIVAQELDLNYQASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT- 351
IP ++ A++ P + D+A+EG D LR G ++ + +WS
Sbjct: 293 ILIPSEWVQAAVDAHIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEWSGKG 352
Query: 352 -DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
D+ + K+ GL + + D D + GA +
Sbjct: 353 SDIYDSVVKVFGLCDDFGADEFRFDEDGLGAGVRGDARAINELREAEGTDQITATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF----------------- 426
V G+ ++ +F N + + +
Sbjct: 413 GSVFYPENEAVPGDNGKPARLNKDFFANAKAQGWWHLRKLFRNTFRALKGMEYDPDEIIS 472
Query: 427 --ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ N L+ L S ++ G++ + K+ G KS + +D +M +A
Sbjct: 473 ISSTMENKDRLLMEL-SQPTWSKNAVGKILV-DKQPDGTKSPNLADSVMIAYAP 524
>gi|332759085|gb|EGJ89395.1| gp33 TerL [Shigella flexneri 4343-70]
Length = 519
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 72/534 (13%), Positives = 154/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 5 QRIRQNPEILPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 56
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 57 QEEWIHWIMERWGNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 108
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 109 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWDEKKHAPYMRVEFPETGAVIK 163
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DE++ L I L+ R I S+ ++
Sbjct: 164 GEAGDNIG-----RGDRTTLYLVDESAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 214
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R D ++ + + V E+ +
Sbjct: 215 NPFAQKRH--GGKIPVFTFHWRDDPRKDEEWYRRECEKID-NPVVVAQELDLNYSASAEG 271
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 272 VLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNSFSTRHGFLLENVREWSGVG 331
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + K+ G E+ + D + GA +
Sbjct: 332 SDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGS 391
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + ++ + N +I
Sbjct: 392 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMDYNPDEII 451
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ I K+ G +S + +D +M ++A
Sbjct: 452 SISSSMALKDKLIIELSQPTYSINGVGKIVI-DKQPDGTRSPNLADSVMISYAP 504
>gi|320179507|gb|EFW54461.1| Phage terminase, large subunit [Shigella boydii ATCC 9905]
Length = 539
Score = 140 bits (353), Expect = 4e-31, Method: Composition-based stats.
Identities = 74/534 (13%), Positives = 154/534 (28%), Gaps = 93/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPVLKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWSNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYFVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMN 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R+ D ++ + + + E+ +
Sbjct: 236 NPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECDKID-NPVIVAQELDLNYQASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT- 351
IP ++ A++ P + D+A+EG D LR G ++ + +WS
Sbjct: 293 ILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGKG 352
Query: 352 -DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
D+ + K+ GL + + D D + GA +
Sbjct: 353 SDIYDSVVKVFGLCDDFGADEFRFDEDGLGAGVRGDARAINELREAEGICQITATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF----------------- 426
V G+ ++ +F N + + +
Sbjct: 413 GSVFHPENEAVPGDNGKPARLNKDFFVNAKAQGWWHLRKLFRNTFRALQGMEYDPDEIIS 472
Query: 427 --ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ N L+ L S ++ TG++ + K+ G KS + +D +M +A
Sbjct: 473 ISSTMENKDRLLMEL-SQPTWSKNATGKILV-DKQPDGTKSPNLADSVMIAYAP 524
>gi|238765385|ref|ZP_04626308.1| Gp33 TerL [Yersinia kristensenii ATCC 33638]
gi|238696377|gb|EEP89171.1| Gp33 TerL [Yersinia kristensenii ATCC 33638]
Length = 501
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 62/444 (13%), Positives = 134/444 (30%), Gaps = 69/444 (15%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R +G + + L L + + + E + +T + W + F
Sbjct: 63 SREMGLSWTSIGLACSLCLFNKEMVIGFGSRKEEYVDSTGDPKALFWKAR-----KFVET 117
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
S W + ++ + + + + DE++
Sbjct: 118 LPSEFRGSWSEKKHAPYMRVEFPDTGAVIKGEAGDNIG-----RGDRTTLYFVDESAFL- 171
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
L I L+ R I S+ ++ F + + F R+ D
Sbjct: 172 -QRPLLIDAALS--QTTRCRIDLSSVNGMNNPFAQKRH--GGKIPVFTFHWRSDPRKDDE 226
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMGC 322
++ + + V E+ + IP ++ A++ D P +
Sbjct: 227 WYRKECEKID-NPVVVAQELDLNYQASAEGILIPSEWVQAAIDAHIHLDIQPSGARLGAM 285
Query: 323 DIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS--GLVEKYRPDAIIIDANNTG 380
D+A+EG D +R G +++ + +WS + + G ++Y D D + G
Sbjct: 286 DVADEGRDKNGFAIRYGFLLQDVKEWSGEGSDIYASVVKVFGYCDEYGLDEFRFDEDGLG 345
Query: 381 ARTCDYLEMLGY---------------------------HVYRVLGQKRAVDLEFCRNRR 413
A ++ V G+ ++ +F N +
Sbjct: 346 AGVRGDARVINELRQSERLGPITATPFRGSGAVFDPDDEAVIGDNGKPARLNKDFFANAK 405
Query: 414 TELHVKMADWLE-------------------FASLINHSGLIQNLKSLKSFIVPNTGELA 454
+ + +++ N LI L S ++ G++
Sbjct: 406 AQGWWHLRKLFRNTFRAMKGMDYNPDEIISINSTMENKDRLIMEL-SQPTWSKNAVGKIV 464
Query: 455 IESKRVKGAKSTDYSDGLMYTFAE 478
I K+ +G KS + +D +M +A
Sbjct: 465 I-DKQPEGTKSPNLADAVMINYAP 487
>gi|193062794|ref|ZP_03043887.1| putative conserved hypothetical protein [Escherichia coli E22]
gi|192931437|gb|EDV84038.1| putative conserved hypothetical protein [Escherichia coli E22]
Length = 603
Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats.
Identities = 52/467 (11%), Positives = 117/467 (25%), Gaps = 63/467 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + HC + K R +G T AW V
Sbjct: 145 DTWAREHLFEYQLHCREHKGEDWRFILK-----SRQVGMTYYFAWEAFEDAVITGDNQVF 199
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL-----------HPAPWYSDVLHC 160
A+ +E+ + + ++ F + + S
Sbjct: 200 FSASRSQ-------SEIFREYIVQIAQNHFGVTLTGKNIRLSNGAILRFLSTNASTAQGF 252
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + HN Y + ++ T + +
Sbjct: 253 NGHLYGDEVFWIPKFTRLHEVASAMATHNKYRTTYFSTPSAKTHQAYPVWTGEAWRGDDP 312
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
R + P + + + + D E + +Y
Sbjct: 313 KRKGVAF--PTESEMRQGILCPDQIWRYIITMEDAIEGGLGALVDIERLRNKYS--PTAF 368
Query: 281 RVEVCGQFPQQDIDSFIPLNII----EEALNREPCPDPYAP-----LIMGCDIAEEGGDN 331
+ QF F ++ + A + P + G D + G ++
Sbjct: 369 AMLYMCQFVDSKDAVFKFSALVGCEVDRATWGDFDLTAARPFGNREVWAGFDPSRSGDNS 428
Query: 332 TVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
T V++ + ++ W + ++I L+ ++ I ID G D
Sbjct: 429 TFVLIAPPIEDGERFRVLAVWQWQGFNFSWQADQIKQLMRRFNITYIGIDTTGIGKGVYD 488
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCR-NRRTELHVKMADWLEFASLINHSGLIQN------ 438
+ R + L +KM D +E + +
Sbjct: 489 LVS---------KFAPREATPILYSVESKNRLVMKMIDVVERKRIEWAKDAVDETNKERV 539
Query: 439 -----LKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+++ + L ++R D + + P
Sbjct: 540 EIPASFMAIRRTTTNSGNALTFVAERSDATGHADVFFAISHAVINEP 586
>gi|168467237|ref|ZP_02701079.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL317]
gi|195630466|gb|EDX49092.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL317]
Length = 539
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 73/534 (13%), Positives = 156/534 (29%), Gaps = 93/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + PET L ++ WG + G P+
Sbjct: 26 QRIRKAPETLPALRQFYRTNP--------AQFIIDWGMTTDPRNLDYGLPVTIPFLLFPR 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E+++ + N N + R +G + + L L + + +
Sbjct: 78 QEEWIDWIIERSRNQENGLTEK--------SREMGLSWTSVGLASALCLFNREMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T+ + W F + W + ++ + +
Sbjct: 130 RKEEYVDSTVDPKALFW-----KVRKFIATLPAEFRGGWDERKHSRFMSVEFPDTGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYFVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMN 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R+ D ++ + + + E+ +
Sbjct: 236 NPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYRKECEKID-NPIIVAQELDLNYQASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT- 351
IP ++ A++ P + D+A+EG D LR G ++ + +WS
Sbjct: 293 ILIPSEWVQAAVDAHIKLGIQPSGQRLGAMDVADEGRDKNACSLRYGFLLSDVQEWSGKG 352
Query: 352 -DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
D+ + K+ GL + + D D + GA +
Sbjct: 353 SDIYDSVVKVFGLCDDFGADEFRFDEDGLGAGVRGDARAINELREAEGTDQITATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF----------------- 426
V G+ ++ +F N + + +
Sbjct: 413 GRVFYPENEAVPGDNGKPSRLNKDFFANAKAQGWWHLRKLFRNTFRALKGMEYDPDEIIS 472
Query: 427 --ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ N L+ L S ++ G++ + K+ G KS + +D +M +A
Sbjct: 473 ISSTMENKDRLLMEL-SQPTWSKNAVGKILV-DKQPDGTKSPNLADSVMIAYAP 524
>gi|333006277|gb|EGK25786.1| gp33 TerL [Shigella flexneri K-218]
Length = 540
Score = 140 bits (352), Expect = 6e-31, Method: Composition-based stats.
Identities = 72/534 (13%), Positives = 154/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWGNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWDEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DE++ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDESAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRDDPRKDEEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 VLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNSFSTRHGFLLENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + K+ G E+ + D + GA +
Sbjct: 353 SDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + ++ + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMDYNPDEII 472
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ I K+ G +S + +D +M ++A
Sbjct: 473 SISSSMALKDKLIIELSQPTYSINGVGKIVI-DKQPDGTRSPNLADSVMISYAP 525
>gi|326782611|ref|YP_004323017.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM1]
gi|310002825|gb|ADO97224.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM1]
Length = 549
Score = 140 bits (351), Expect = 8e-31, Method: Composition-based stats.
Identities = 66/460 (14%), Positives = 140/460 (30%), Gaps = 66/460 (14%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
L P+ Q++ + F+ + L F +Q E ++
Sbjct: 19 ALDFTPDEVQEVI------KCSEDPVYFIKKYIKIVSLDKGLIPFDM-YHFQEEMVQKFH 71
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
+ N P R GK+T+ +LW + ++V LAN +
Sbjct: 72 DNRFNIAKLP------------RQSGKSTIVTSYLLWYVLFNDNVNVAILANKAATAREM 119
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
L + ++L SL +++ T +
Sbjct: 120 L------------QRLQLSYENLPKWLQQGILQWNRGSLELENGSKIMAAST-------S 160
Query: 184 FVGHHNTYGMAIINDEASGTP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGKFY 238
I DE + P D + ++ + I T + + K +
Sbjct: 161 ASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSGKSTKVIIISTPHGMNMFYKLW 220
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ +++ ++ V G D + E I RVE +F D+ I
Sbjct: 221 HDAERGTNEYIPTEVHWSEVPGRDDVWKEQTIKNTSE--QQFRVEFECEFLGSV-DTLIS 277
Query: 299 LNIIEEALNREPCPD-----------PYAPLIMGCDIAEE-GGDNTVVVLRRG----PVI 342
+ + +P + P ++ D++ G D + + +
Sbjct: 278 PSKLRIMPYHDPMKENRGLAIFEQSIPDHNYVITVDVSRGVGNDYSAFCVMDTTTIPYKM 337
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVL 398
+ ++ N + + + Y I+ + N+ G + D LE + +
Sbjct: 338 VARYRNNEIKPIILPNIVVDVAKNYNNAYILCEVNDIGGQVADIIQFDLEYENLLMAAMR 397
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
G+ + ++T+L VKM+ ++ N LI++
Sbjct: 398 GRAGQQLGQGFSGKKTQLGVKMSTAVKQVGCSNLKALIED 437
>gi|326783550|ref|YP_004323947.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
Syn19]
gi|310005053|gb|ADO99443.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
Syn19]
Length = 549
Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats.
Identities = 67/451 (14%), Positives = 134/451 (29%), Gaps = 61/451 (13%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ F+ + L F +Q E +E + N P
Sbjct: 32 KCSEDPVYFIKTYIKIVSLDKGLIPFDM-YHFQEEMVEKFHDNRFNIAKLP--------- 81
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R GK+T+ +LW + ++V LAN + L +
Sbjct: 82 ---RQSGKSTIVTSYLLWYVLFNQNVNVAILANKAATSREML------------QRLQLS 126
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
++L SL +++ T S I DE +
Sbjct: 127 YENLPKWLQQGILQWNRGSLELENGSKIMAASTSS-------SAVRGMSFNVIFLDEFAF 179
Query: 203 TP----DVINLGILGFLTERN-ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
P D + ++ I T + + K + + +++ ++
Sbjct: 180 VPNHIADQFFSSVYPTISSGQSTKVIIISTPHGMNMFYKLWHDAERSKNEYIPTEVHWSE 239
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC------ 311
V G D + E IA +VE +F D+ I + + +P
Sbjct: 240 VPGRDAKWKEQTIANTSE--QQFKVEFECEFLGSV-DTLISPSKLRVMPYHDPIAQNKGL 296
Query: 312 -----PDPYAPLIMGCDIAE-EGGDNTVVVLRRGPVI----EHLFDWSKTDLRTTNNKIS 361
+P I+ D+A D + + + + ++ N I
Sbjct: 297 AVYKRAEPDHNYIITVDVARGTSNDYSAFCVMDTTTVPYEMVARYRNNEIKPIVFPNIIV 356
Query: 362 GLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ + Y I+ + N+ G + D LE + + G+ + ++T+L
Sbjct: 357 DVAKNYNNAYILCEVNDIGGQVADIIQFDLEYENLLMAAMRGRAGQQLGQGFSGKKTQLG 416
Query: 418 VKMADWLEFASLINHSGLIQNL-KSLKSFIV 447
VKM+ ++ N LI+ + +
Sbjct: 417 VKMSTAVKQVGCSNLKALIEEDKLIIPDYDT 447
>gi|150021340|ref|YP_001306694.1| hypothetical protein Tmel_1462 [Thermosipho melanesiensis BI429]
gi|149793861|gb|ABR31309.1| protein of unknown function DUF264 [Thermosipho melanesiensis
BI429]
Length = 421
Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats.
Identities = 54/337 (16%), Positives = 96/337 (28%), Gaps = 26/337 (7%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + I AGR GKT A + + + P VI S
Sbjct: 14 KLLFGYSEIAPKQRELLYLNGSTQVICAGRRFGKTNYVAGKIFYYATIHPKSRVIVGGPS 73
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
Q K + +++ + L P K + + S P + + ++
Sbjct: 74 LDQAK-IYYDLLTEAIELSPLKGFVKKTKDSPFPTIYLKNGSSITVRS------------ 120
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINL-GILGFLTERNANRFWIMTSNPRRLSG 235
++ EA+ D + I + A T N
Sbjct: 121 ---TAHNGKYLRGRKVNLVVLTEAAFIKDSVYEQVITPMKLDTGAPVILESTPNGMNYFY 177
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+ Y+ K F +D E A+ V R E +F
Sbjct: 178 EEYQRGLKNKKHTISFHATVYDNPFLDQEEIENAKAKTPDY--VWRQEYLAEFVDD-DTV 234
Query: 296 FIPLNIIEEALN--REPCPDPYAPLIMGCDIAEEGGDNTVVVLR---RGPVIEHLFDWSK 350
F P I+ EA + +G D+A+ ++VL I +++
Sbjct: 235 FFPWKILVEAFEDYKPEGYKDGRKYSIGVDLAKYRDYTVIIVLDVTEEPFKIAEFHRFNQ 294
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
++ L KYR + +DA G + +
Sbjct: 295 IPYEEVIRIVNDLQAKYR-AQVYLDATGVGDPISERI 330
>gi|322835667|ref|YP_004215693.1| terminase large subunit [Rahnella sp. Y9602]
gi|321170868|gb|ADW76566.1| terminase large subunit [Rahnella sp. Y9602]
Length = 539
Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 78/532 (14%), Positives = 152/532 (28%), Gaps = 88/532 (16%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTP-----LEGFSAPRSWQLE 57
+ + PE L + WG P S P
Sbjct: 26 QRIRQQPEMLPALNAFYRDNP--------AQFIIDWGMTTDPRNLDFGMPVSVPF----- 72
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ +N + + + G R +G + + L L + + + E
Sbjct: 73 LLFPKQEEWINWIMDRRSQQENGITEKSREMGLSWTSIGLACALCLFNKEMVIGFGSRKE 132
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
+ +T + W + F W + + ++ + + +
Sbjct: 133 EYVDSTGDPKALFWKAR-----KFVEMLPVEFRGGWSAKKHAPYMRVEFPTTGAVLKGEA 187
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ DEA+ L I L+ R I S+ ++ F
Sbjct: 188 GDNIG-----RGDRTTLYFVDEAAFL--QRPLLIEASLS--QTTRCRIDLSSVNGMANPF 238
Query: 238 YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
+ + F R+ D +++ A+ + V E+ + I
Sbjct: 239 AQKRH--GGRIPVFTFHWRSDPRKDEAWYAKECAKID-NPVVVAQELDLNYSASAEGVLI 295
Query: 298 PLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDL 353
P I A+N P + D+A+EG D R G ++ + +WS +D+
Sbjct: 296 PNEWIRAAINAHIKLGIQPTGKRLGAMDVADEGRDKNAFSARYGFLLTEVEEWSGVGSDI 355
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY--------------------- 392
++ K GL +K+ + D + GA +
Sbjct: 356 YKSSEKAFGLCDKHGLEEFRFDEDGLGAGVRGDARAINEIRKAEGARYILATPFRGSASV 415
Query: 393 ------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF-------------------- 426
V GQ ++ +F N + + +
Sbjct: 416 FDPEAEAVPGDNGQPARINKDFFANAKAQSWWHLRKLFRNVYRAVEEKMDYNPDEIISIS 475
Query: 427 ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ N LI L S ++ + G++ I K+ G KS + SD +M +A
Sbjct: 476 GDIKNLDKLIIEL-SQPTYSINGVGKI-IVDKQPDGTKSPNLSDSVMINYAP 525
>gi|320198795|gb|EFW73395.1| Phage terminase, ATPase subunit [Escherichia coli EC4100B]
Length = 603
Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 52/467 (11%), Positives = 116/467 (24%), Gaps = 63/467 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + HC + K R +G T AW V
Sbjct: 145 DTWAQEHLFEYQLHCREHKGEDWRFILK-----SRQVGMTYYFAWEAFEDAVITGDNQVF 199
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL-----------HPAPWYSDVLHC 160
A+ +E+ + + ++ F + + S
Sbjct: 200 FSASRSQ-------SEIFREYIVQIAQNHFGVTLTGKNIRLSNGAILRFLSTNASTAQGF 252
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + HN Y + ++ T + +
Sbjct: 253 NGHLYGDEVFWIPKFTRLHEVASAMATHNKYRTTYFSTPSAKTHQAYPVWTGEAWRGDDP 312
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
R + N + + + D E + +Y
Sbjct: 313 KRKGVKFPNE--SEMCQGILCPDQIWRYIITMEDAIEGGLGALVDIERLRNKYS--PTAF 368
Query: 281 RVEVCGQFPQQDIDSFIPLNII----EEALNREPCPDPYAP-----LIMGCDIAEEGGDN 331
+ QF F ++ + A + P + G D + G ++
Sbjct: 369 AMLYMCQFVDSKDAVFKFSALVGCEVDRATWGDFDLTATRPFGNREVWAGFDPSRSGDNS 428
Query: 332 TVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
T V++ + ++ W + ++I L+ ++ I ID G D
Sbjct: 429 TFVLIAPPIEDGERFRVLAVWQWQGFNFSWQADQIKQLMRRFNITYIGIDTTGIGKGVYD 488
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCR-NRRTELHVKMADWLEFASLINHSGLIQN------ 438
+ R + L +KM D +E + +
Sbjct: 489 LVS---------KFAPREATPILYSVESKNRLVMKMIDVVERKRIEWAKDAVDETNKERV 539
Query: 439 -----LKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+++ + L ++R D + + P
Sbjct: 540 EIPASFMAIRRTTTNSGNALTFVAERSDATGHADVFFAISHAVINEP 586
>gi|211731828|gb|ACJ10140.1| terminase [Bacteriophage APSE-6]
Length = 469
Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/461 (16%), Positives = 126/461 (27%), Gaps = 86/461 (18%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG KT A + L S +CL ++ ++ A + + L + F +
Sbjct: 12 GGRGGMKTVSFAKIALITASMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLQVRFRV 70
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + H +EA
Sbjct: 71 LNSCI--------------EGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP------------LDDWKRF 251
+ ++ + + + + NP G Y+ F KP DD
Sbjct: 113 SEKSLDTLIPTIRKPGSELRFSF--NPAEEDGAVYKRFVKPYKAIIDKQGYYEDDDLYVG 170
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ + + R G+ D+ I + A++
Sbjct: 171 NVSYLDNPWLPVELKNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVGAAIDAHIK 230
Query: 312 P--DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P ++ D A G D + R G +IE W + D+ YR
Sbjct: 231 LGFKPSGIRVVTFDPAGSGQDEKALSKRYGVLIEDCVSWLEGDVADATMTAFDEAFDYRA 290
Query: 370 DAIIIDANNTGARTC------------------------DYLEML----GYHVYRVLGQK 401
D I D GA T DY +
Sbjct: 291 DDFIYDNIGLGAGTVKTHLRHSNDGSKMVVTGFGAGDSPDYPHEIYVPGNGEYLPSSNND 350
Query: 402 RAVDLEFCRNRRTELHVKMADWL-------EFASLINHSGLIQ-------------NLKS 441
+ RN+R + V +AD E ++ LI L
Sbjct: 351 DRTHRDTFRNKRAQYWVYLADRFYKTWRAVEKGEYLDPDALISLSSKIAKLSQLKSELIK 410
Query: 442 LKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
+ P + + SK R+KG KS + +D LM +FA
Sbjct: 411 QQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|62181180|ref|YP_217597.1| hypothetical protein SC2610 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62128813|gb|AAX66516.1| orf, partial conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|322715669|gb|EFZ07240.1| hypothetical protein SCA50_2790 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 540
Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 66/526 (12%), Positives = 149/526 (28%), Gaps = 76/526 (14%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
+ + +PE L ++ WG P +
Sbjct: 26 QRIRQHPEMLPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
++ + + G R +G + + L + + + E + +
Sbjct: 78 QEEWVHWIMERWGKRENGITEKSREMGLSWTAIGMACSLCLFNKEMVIGFGSRKEEYVDS 137
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
T + W + F W + ++ + + + +
Sbjct: 138 TGDPKALFWKAR-----KFVETLPVEFRGSWNEKKHAPYMRVEFPETGAVIKGEAGDNIG 192
Query: 183 TFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
+ DEA+ L I L+ R I S+ ++ F + +
Sbjct: 193 -----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMANPFAQKRH 243
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
F R+ D ++ + + V E+ + IP + +
Sbjct: 244 --GGKIPVFTFHWRSDPRKDDEWYRRECEKID-NPVVVAQELDLNYSASAEGVLIPSDWV 300
Query: 303 EEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNN 358
+ A++ P + D+A+EG D R G ++E++ +WS +D+ +
Sbjct: 301 QAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVE 360
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY-------------------------- 392
K+ G E+ + D + GA +
Sbjct: 361 KVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRKAARRPPILATPFRGSGAVFDPDD 420
Query: 393 -HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLIQ------- 437
V GQ ++ +F N + + + N +I
Sbjct: 421 EAVRGDNGQAARLNKDFFANAKAQSWWYLRKLFRNTYRAVVEGMAYNPDEIISISSTMES 480
Query: 438 -----NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ + K+ G +S + +D +M ++A
Sbjct: 481 KDKLIIELSQPTYSINGVGKIVV-DKQPDGTRSPNLADSVMISYAP 525
>gi|326782863|ref|YP_004323261.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-RSM4]
gi|310004122|gb|ADO98516.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-RSM4]
Length = 547
Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats.
Identities = 68/462 (14%), Positives = 138/462 (29%), Gaps = 60/462 (12%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
N + K ++ + + F+ ++ L F+ +Q E +
Sbjct: 9 PNLKKVNTSIDFKPEEVAEVLKCQDDPIYFIKNYIKIVSLDEGLVPFNM-YHFQEEMVSK 67
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
H N P R GK+T+ +LW + ++V LAN +
Sbjct: 68 FHDHRFNIAKLP------------RQSGKSTIVTAYLLWYVLFNANVNVAILANKAATAR 115
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
L + ++L SL +++ T
Sbjct: 116 EML------------QRLQLSYENLPNWMQQGILQWNRGSLELENGSKIMAAST------ 157
Query: 182 DTFVGHHNTYGMAIINDEASGTP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGK 236
+ I DE + P D + ++ + I T + + K
Sbjct: 158 -SASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSGKSTKVIIISTPHGMNMFYK 216
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + +++ ++ V G D + E I RVE +F D+
Sbjct: 217 LWHDAERGTNEYVPTEVHWSEVPGRDDVWKEQTIKNTSE--SQFRVEFECEFLGSV-DTL 273
Query: 297 IPLNIIEEALNREP-----------CPDPYAPLIMGCDIAEE-GGDNTVVVLRRG----P 340
I + + +P P I+ D++ G D + +
Sbjct: 274 IAPSKLRIMPYHDPITSNRGLAVYEQVIPEHNYIITVDVSRGVGNDYSAFCVIDTTTIPY 333
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYR 396
+ + ++ N I + + Y I+ + N+ G + D LE +
Sbjct: 334 KMVARYKNNEIKPIVLPNIIVDIAKNYNNAYILCEVNDIGGQVADIIQFDLEYENLLMAA 393
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
+ G+ + ++T+L VKM+ + N LI+
Sbjct: 394 MRGRAGQQLGQGFSGKKTQLGVKMSTATKQVGCSNLKALIEE 435
>gi|194445851|ref|YP_002040314.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL254]
gi|194404514|gb|ACF64736.1| gp33 TerL [Salmonella enterica subsp. enterica serovar Newport str.
SL254]
Length = 540
Score = 137 bits (345), Expect = 4e-30, Method: Composition-based stats.
Identities = 69/534 (12%), Positives = 153/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + +PE L ++ WG + G P+
Sbjct: 26 QRIRQHPEMLPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N + R +G + + L + + +
Sbjct: 78 QEEWIHWIMERWGKRENGITEK--------SREMGLSWTAIGMACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWNEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R+ D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRSDPRKDDEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP + ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 VLIPSDWVQAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + K+ G E+ + D + GA +
Sbjct: 353 SDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRKAARRPPILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWYLRKLFRNTYRAVVEGMAYNPDEII 472
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ + K+ G +S + +D +M ++A
Sbjct: 473 SISSTMESKDKLIIELSQPTYSINGVGKIVV-DKQPDGTRSPNLADSVMISYAP 525
>gi|211731785|gb|ACJ10115.1| terminase [Bacteriophage APSE-7]
Length = 469
Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats.
Identities = 71/461 (15%), Positives = 126/461 (27%), Gaps = 86/461 (18%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG KT A + L + +CL ++ ++ A + + L F +
Sbjct: 12 GGRGGMKTVSFAKIALITAAMHK-RRFLCLREFMNSIEDSVHAVLQAEVETLGLHARFRV 70
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + H +EA
Sbjct: 71 LNSCI--------------EGINASIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP------------LDDWKRF 251
+ ++ + + + ++ NP G Y+ F KP DD
Sbjct: 113 SEKSLDTLISTIRKPGSELWFSF--NPSEEDGAVYQRFVKPYKAIIDKKGYYEDDDLYVG 170
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ + + R G+ D+ I ++ A++
Sbjct: 171 NVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYDDALIQPEWVDAAIDAHIK 230
Query: 312 PD--PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P ++ D A+ G D + R G +IE WS+ D+ YR
Sbjct: 231 LGFPPRGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATITAFDEAFDYRA 290
Query: 370 DAIIIDANNTGARTC----------------------------DYLEMLGYHVYRVLGQK 401
D I D GA T +
Sbjct: 291 DDFIYDNIGLGAGTVKTHLRHSNDGNKMVVTGFGAGDSPDYPDEVYVPSNAEYLPSSNND 350
Query: 402 RAVDLEFCRNRRTELHVKMADWL-------EFASLINHSGLI-------------QNLKS 441
+ RN+ + V +AD E ++ LI L
Sbjct: 351 DRTHRDTFRNKHAQYWVYLADRFYKTWRAVEKGEYLDPDELISLSSKIEKLSQLKSELVK 410
Query: 442 LKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
+P + + SK R+KG KS + +D LM +FA
Sbjct: 411 QPRKRMPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|326784324|ref|YP_004324722.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM5]
gi|310003555|gb|ADO97951.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM5]
Length = 549
Score = 137 bits (344), Expect = 5e-30, Method: Composition-based stats.
Identities = 69/462 (14%), Positives = 137/462 (29%), Gaps = 60/462 (12%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
N + ++ F+ ++ L F +Q E +
Sbjct: 11 PNLKKANTAIDFTPDEVAEVLRCSEDPVYFIKNYIKIVSLDKGLIPFDM-YHFQEEMVSK 69
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
A N P R GK+T+ +LW + P ++V LAN +
Sbjct: 70 FHAERFNIAKLP------------RQSGKSTIVTSYLLWYVLFNPNVNVAILANKAATAR 117
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
L + ++L SL +++ T
Sbjct: 118 EML------------QRLQLSYENLPKWLQQGILQWNRGSLELENGSKIMAAST------ 159
Query: 182 DTFVGHHNTYGMAIINDEASGTP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGK 236
+ I DE + P D + ++ + I T + + K
Sbjct: 160 -SASAVRGMSFNVIFLDEFAFIPNHIADQFFSSVYPTISSGKSTKVIIISTPHGMNMFYK 218
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + +++ ++ V G D + E I RVE +F D+
Sbjct: 219 LWHDAERGSNEYVPTEVHWSEVPGRDEVWKEQTIKNTSE--QQFRVEFECEFLGSV-DTL 275
Query: 297 IPLNIIEEALNREPCPD-----------PYAPLIMGCDIAEE-GGDNTVVVLRRG----P 340
I + + EP P I+ D++ G D + +
Sbjct: 276 ISPSKLRIMPYHEPMNQNRGLAVFEQAIPEHNYILTVDVSRGVGNDYSAFTVMDTTTIPY 335
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYR 396
+ + ++ N I + + Y I+ + N+ G + D LE +
Sbjct: 336 KMVARYKNNEIKPIVLPNIIVDVAKAYNNAYILCEVNDIGGQVADIIQFDLEYENLLMAA 395
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
+ G+ + ++T+L VKM+ ++ N LI++
Sbjct: 396 MRGRAGQQLGQGFSGKKTQLGVKMSTAVKQVGCSNLKALIED 437
>gi|224582844|ref|YP_002636642.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467371|gb|ACN45201.1| hypothetical protein SPC_1035 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 540
Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats.
Identities = 69/534 (12%), Positives = 153/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + +PE L ++ WG + G P+
Sbjct: 26 QRIRQHPEMLPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N + R +G + + L + + +
Sbjct: 78 QEEWIHWIMERWGKRENGITEK--------SREMGLSWTAIGMACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWNEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R+ D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRSDPRKDDEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP + ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 ILIPSDWVQAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + K+ G E+ + D + GA +
Sbjct: 353 SDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRKAARRPPILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWYLRKLFRNTYRAVVEGMAYNPDEII 472
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ + K+ G +S + +D +M ++A
Sbjct: 473 SISSTMESKDKLIIELSQPTYSINGVGKIVV-DKQPDGTRSPNLADSVMISYAP 525
>gi|169633984|ref|YP_001707720.1| putative bacteriophage protein; putative prophage terminase large
subunit [Acinetobacter baumannii SDF]
gi|169152776|emb|CAP01795.1| putative bacteriophage protein; putative prophage terminase large
subunit [Acinetobacter baumannii]
Length = 552
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 76/543 (13%), Positives = 152/543 (27%), Gaps = 98/543 (18%)
Query: 1 MSRELPTNPETEQ-KLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAP-------R 52
M+R EQ +L + ++ + + W + F P R
Sbjct: 28 MTRRYYYKAAIEQNELSIQAEIYKCSKDPIHW-FNNWIWTYDPRGMA-FGLPANIPFVLR 85
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
Q+E + ++ + I R G + + L G +
Sbjct: 86 PKQVELVAWLEERESTQTHG--------LIEKSRDEGMSYVVLGFFLHRWLFVEGFAGGV 137
Query: 113 LANSETQLKTT-----LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ E + L+ + S +P L P + V + I +
Sbjct: 138 GSRKEELVDKKGDPKTLFHKFRDMFSKMPQW---------LKPKGFVEKVHDNYMRIINP 188
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + DE + + ++ I
Sbjct: 189 DNGATITGEAGDNIG-----RGGRTTMYFLDEWAFV--EQQEAVDAAIS--QNTNVHIKG 239
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG------IDPSFHEGIIARY--GLDSDV 279
S P + +F++ + + F + R + + LD V
Sbjct: 240 STPNGIGDRFHQD--RFSGRYAVFTMPWRDNPDKNWTVTYNGKVIYPWYEKQLATLDDVV 297
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLR 337
EV + IP ++ A++ +P I G D+A+EG D R
Sbjct: 298 LAQEVDINYAASVEGVLIPSTWVQAAIDAHKKLQIEPTGDRIGGLDVADEGKDKNSFAAR 357
Query: 338 RGPVIEHLFDWSKT--DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG---- 391
G V+ +L WS D+ T K L + D + DA+ GA ++
Sbjct: 358 HGVVMTYLATWSGKGDDIFGTTQKAMDLCFEKSIDTLFYDADGLGAGCRGDARVINEKRR 417
Query: 392 ------YHVYRVLGQK-----------RAVDLEFCRNRRTELHVKMADWLE------FAS 428
+V G + ++ +F N + + + +
Sbjct: 418 ELGLSEINVESFRGSGSVHDPEGEMVEKRLNKDFFANLKAQSWWSLRLRFQETFRALEGR 477
Query: 429 LINHS---------------GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
+ L+ S ++ G++ + +K+ G S + +D +M
Sbjct: 478 DYDPDMIISLSSEDIDAKELALLTTELSQPTYTKNGVGKILV-NKQPDGTASPNRADSVM 536
Query: 474 YTF 476
F
Sbjct: 537 ICF 539
>gi|167993618|ref|ZP_02574712.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
str. CVM23701]
gi|205328294|gb|EDZ15058.1| gp33 TerL [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
str. CVM23701]
Length = 539
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 68/534 (12%), Positives = 152/534 (28%), Gaps = 92/534 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + +PE L ++ WG + G P+
Sbjct: 26 QRIRQHPEMLPALKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N + R +G + + L + + +
Sbjct: 78 QEEWIHWIMERWGKRENGITEK--------SREMGLSWTAIGMACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWNEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYLVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMA 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R+ D ++ + + V E+ +
Sbjct: 236 NPFAQKRH--GGKIPVFTFHWRSDPRKDDEWYRRECEKID-NPVVVAQELDLNYSASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK-- 350
IP + ++ A++ P + D+A+EG D R G ++E++ +WS
Sbjct: 293 VLIPSDWVQAAVDAHIRLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREWSGVG 352
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
+D+ + ++ G E+ + D + GA +
Sbjct: 353 SDIYQSVERVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRKAARRPPILATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINHSGLI 436
V GQ ++ +F N + + + N +I
Sbjct: 413 GAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWYLRKLFRNTYRAVVEGMAYNPDEII 472
Query: 437 Q------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
S ++ + G++ + K+ G +S + +D M ++A
Sbjct: 473 SISSTMESKDKLIIELSQPTYSINGVGKIVV-DKQPDGTRSPNLADSAMISYAP 525
>gi|53793591|ref|YP_112491.1| terminase large subunit [Flavobacterium phage 11b]
gi|53748181|emb|CAH56642.1| terminase large subunit [Flavobacterium phage 11b]
Length = 432
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 65/409 (15%), Positives = 137/409 (33%), Gaps = 39/409 (9%)
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ L ++ PG + + LK T +FE S+
Sbjct: 32 KSALGILWLIEQCQAYPGTRWLMGRSKLKALKETT------------LNTFFEQASILKI 79
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209
+ + + ++ + Y+ F + DE +
Sbjct: 80 TEQYNYNAQSGVIYWNNGSEILLKDLYAYPSDQNFDSLGSLEISGAFIDECNQITYKAWQ 139
Query: 210 GILG----FLTERNANRFWIMTSNP-RRLSGKFYEIFNKP---LDDWKRFQIDTRTVEGI 261
+ L + + T NP + + + +K +D K Q +
Sbjct: 140 IVKSRIRYKLNQYGIEPKMLGTCNPAKNWVYAQFYLKDKNGTLDNDKKFIQALPTDNPHL 199
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQF-PQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
S+ ++ LD + + G + D I I+ P+ + +
Sbjct: 200 PASYLTSLL---SLDENSKQRLYYGNWEYDNDPAKLIDYEKIQNCFTNTFI--PFGEMYI 254
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
DIA G D V+ + G + +F +K+ + + GL K++ + +
Sbjct: 255 SADIARFGSDKMVICVWSGFRVVEIFSMAKSSITEIAEAVRGLSIKHKVPLSNVICDED- 313
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLE--FCRNRRTELHVKMADWLEFASLINH------ 432
+++LG + + VD + +N +T+ + K+A+ ++ +L H
Sbjct: 314 GVGGGVVDVLGCTGFINNSRAMEVDNQVVQYQNLKTQCYYKLAEVIQSNNLYIHSEDATV 373
Query: 433 -SGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFA 477
+ + L+ +K + + G+L + SK + +S DYSD LM
Sbjct: 374 NDEITKELEQVKRDKIDSDGKLQLISKDKVKQAIGRSPDYSDALMMRMY 422
>gi|211731761|gb|ACJ10100.1| terminase [Bacteriophage APSE-4]
Length = 469
Score = 136 bits (341), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/461 (15%), Positives = 131/461 (28%), Gaps = 86/461 (18%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG KT A + L + +CL ++ ++ A + + L + F +
Sbjct: 12 GGRGGMKTVSFAKIALLTAAMHK-RRFLCLREFINSIEDSVHAVLQAEVETLGLQVRFRV 70
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + H +EA
Sbjct: 71 LNSCI--------------EGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETV 112
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP------------LDDWKRF 251
+ ++ + + + ++ NP G Y F KP D+
Sbjct: 113 SEKSLDTLIPTIRKPGSELWFSF--NPAEEDGAVYRRFVKPYKAIIDKQGYYEDDEVYVG 170
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
++ + + R G+ D+ I ++ A++
Sbjct: 171 KVSYLDNPWLPAELKNDAQKMKRENYKKWRHVYGGECDANYGDALIQPEWVDAAIDAHIK 230
Query: 312 P--DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P ++ D A+ G D + R G +IE WS+ D+ YR
Sbjct: 231 LGFKPSGIRVVTFDPADSGQDEKALSKRYGVLIEDCVSWSEGDVADATITAFDDAFDYRA 290
Query: 370 DAIIIDANNTGARTC------------------------DYLEML----GYHVYRVLGQK 401
D I D GA T DY + +
Sbjct: 291 DDFIYDNIGLGAGTVKTHLRHSNDGTKMVVTGFGAGDSPDYPDEIYVPGNGEYLPSSNND 350
Query: 402 RAVDLEFCRNRRTELHVKMADWL-------EFASLINHSGLI-------------QNLKS 441
+ RN+R + V +AD E ++ LI L
Sbjct: 351 DRTHRDTFRNKRAQYWVYLADRFYKTWRAVERGEYLDPDALISLSSKIAKLSQLKSELIK 410
Query: 442 LKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMYTFAEN 479
+ P + + SK R+KG KS + +D LM +FA
Sbjct: 411 QQRKRTPGNRLIQLMSKDEMRLKGIKSPNMADTLMMSFANP 451
>gi|61806303|ref|YP_214662.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM4]
gi|61563847|gb|AAX46902.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM4]
Length = 550
Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/469 (13%), Positives = 133/469 (28%), Gaps = 68/469 (14%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFME 60
N T+ + + F+ + + ++Q + +
Sbjct: 12 PNLKKANVSTQFTKKQVAEYMKCAQDPVYFIRKYIRIVSLDEGVIPFDMY--NFQEDMVT 69
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H N P R GK+T+ +LW + ++V LAN
Sbjct: 70 KFHQHRFNIAKLP------------RQSGKSTIVTAYLLWYVLFNANVNVAILANKAPTA 117
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+ L + ++L SL +++ T
Sbjct: 118 REML------------GRLQLSYENLPKWMQQGILGWNKGSLELENGSKILASST----- 160
Query: 181 PDTFVGHHNTYGMAIINDEASGTP----DVINLGILGFLTER-NANRFWIMTSNPRRLSG 235
+ I DE + P + + ++ + I T +
Sbjct: 161 --SASAVRGMSFNIIFLDEFAFVPNHIAEQFFASVYPTISSGKSTKVIIISTPHGMNQFY 218
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
K + + +++ ++ V G D + + I RVE +F D+
Sbjct: 219 KLWHDAERGANNYVATEVHWSQVPGRDDKWKQQTIENTSE--AQFRVEFECEFLGSV-DT 275
Query: 296 FIPLNIIEEALNREPC-----------PDPYAPLIMGCDIAEE-GGDNTVVVLRRG---- 339
I + + ++P I+ D++ G D + +
Sbjct: 276 LITPSKLRIMPYKDPIQENRGLAVYEHVQENHNYIITVDVSRGVGNDYSAFCVIDTTTVP 335
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVY 395
+ + ++ N I + Y ++ + N+ G + D LE +
Sbjct: 336 YKVVARYKNNQIKPLVFPNLIVDVATNYNGAYVLCEVNDIGGQVADIIQYDLEYENLLMV 395
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS------LINHSGLIQN 438
+ G+ + ++T+L +KM+ ++ LI LI
Sbjct: 396 SMRGRAGQQLGQGFSGKKTQLGIKMSTAVKQVGCSNLKALIEDDKLIVE 444
>gi|294650848|ref|ZP_06728195.1| bacteriophage terminase large subunit TerL [Acinetobacter
haemolyticus ATCC 19194]
gi|292823266|gb|EFF82122.1| bacteriophage terminase large subunit TerL [Acinetobacter
haemolyticus ATCC 19194]
Length = 552
Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats.
Identities = 84/545 (15%), Positives = 156/545 (28%), Gaps = 102/545 (18%)
Query: 1 MSRELPTNPETEQ-KLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAP-------R 52
MSR TEQ +L + K ++ H + W + F P R
Sbjct: 28 MSRRYYYKAVTEQSELSIQAEIYKCKNDPIHWFNH-WIWTYDPRGM-SFGLPANIPFVLR 85
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
Q+E +E + + I R G + + L G +
Sbjct: 86 PKQVELVEWLSE--RENTQTHG------LIEKSRDEGMSYVVLGYFLHRWLFVDGFAGGV 137
Query: 113 LANSETQLKTT-----LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ E + L+ + S +P+ + P + V + I +
Sbjct: 138 GSRKEELVDKKGDPKTLFHKFRDMFSKMPDW---------MKPTGFVEKVHDNYMRIINP 188
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + DE + + ++ I
Sbjct: 189 DNGATITGEAGDNIG-----RGGRTTMYFLDEWAFV--ERQEAVDAAIS--QNTNVHIKG 239
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID----------PSFHEGIIARYGLDS 277
S P + +F++ + + F + R + ++E +A LD
Sbjct: 240 STPNGIGDRFHQD--RFSGRYAVFSMPWRANPDKNWTVEYNGKQIHPWYEKQLAT--LDD 295
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVV 335
V EV + IP ++ A++ +P I G D+A+EG D
Sbjct: 296 VVLAQEVDINYAASVEGVLIPSTWVQLAIDAHIKLGIEPTGDRIAGLDVADEGKDKNSFA 355
Query: 336 LRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKYRPDAIIIDANNTGAR------TCDYL 387
R G V+ +L WS D+ T K L D + DA+ GA + L
Sbjct: 356 SRHGIVMTYLDTWSGKGDDIFGTTQKAMDLSIDQSIDTLFYDADGLGAGCRGDARVVNEL 415
Query: 388 EML----GYHVYRVLGQKR-----------AVDLEFCRNRRTELHVKMADWLEF-----A 427
V G + +F N + + + +
Sbjct: 416 RREQGLSEVDVQPFRGSGAVHEPDEQMVEMRFNKDFFANLKAQSWWSLRLRFQETFRALE 475
Query: 428 SLINHSGLI----------QNL------KSLKSFIVPNTGELAIESKRVKGAKSTDYSDG 471
+I + L S ++ G++ + +K+ G S + +D
Sbjct: 476 GREYDRDMIISFSSEHIDPKELAMLTTELSQPTYTKNGVGKILV-NKQPDGTASPNRADS 534
Query: 472 LMYTF 476
+M F
Sbjct: 535 VMICF 539
>gi|170023468|ref|YP_001719973.1| hypothetical protein YPK_1222 [Yersinia pseudotuberculosis YPIII]
gi|169750002|gb|ACA67520.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII]
Length = 534
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 70/520 (13%), Positives = 156/520 (30%), Gaps = 89/520 (17%)
Query: 25 KLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPE 76
+ + + F++ WG + G P+ Q E++ + N N +
Sbjct: 43 RNNPAQFII---DWGMTTDPRNLDYGLPVSIPFLLFPKQEEWVHWIMDRRRNMENGLTDK 99
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
R +G + ++ L L + + + E + +T + W +
Sbjct: 100 --------SREMGLSWVSVGLSSTLCLFNKEMVIGFGSRKEEYVDSTGDPKALFWKAR-- 149
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
F + W + + I+ ++ + + +
Sbjct: 150 ---KFIETLPAEFRGSWDNKKHAPYMRIEFPDSGSIIKGEAGDNIG-----RGDRTTMYF 201
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
DE++ L I L+ R I S+ ++ F + + F R
Sbjct: 202 VDESAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMNNPFAQKRH--GGKIPVFTFHWR 255
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDP 314
+ D ++++ + + + E+ + IP ++ A+ P
Sbjct: 256 SDPRKDDAWYKKECEKID-NPVIVAQELDLNYNAAAEGILIPSEWVQAAIGAHTKLGITP 314
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKYRPDAI 372
I D+A+EG D R G +++ L WS D+ T L ++ D +
Sbjct: 315 SGARIGALDVADEGIDLNAFSSRTGVLLDRLKAWSGKGSDIYATTQDAMILSDENDCDYL 374
Query: 373 IIDANNTGARTCDYLEMLG----------YHVYRVLGQK-----------------RAVD 405
+ D++ GA ++ + G +
Sbjct: 375 LYDSDGLGAGCRGDGRVINETRQKAGQRQVEIKPFRGSGEVIYPDKPVFKADTKRDARTN 434
Query: 406 LEFCRNRRTELHVKMADWLEFAS--------------------LINHSGLIQNLKSLKSF 445
++ NR+ + + + L LI L S ++
Sbjct: 435 KDYFANRKAQGWWALRMRFQEVYRAVVKGMPFDPDEIISIDENLPEKEKLIAEL-SQPTY 493
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDM 485
+ G++ + K G +S +++D +M +A R
Sbjct: 494 TINGAGKVTV-DKAPSGTRSPNHADTVMICYAPEKIRRST 532
>gi|113200627|ref|YP_717790.1| terminase large subunit [Synechococcus phage syn9]
gi|76574526|gb|ABA47091.1| terminase large subunit [Synechococcus phage syn9]
Length = 549
Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/462 (13%), Positives = 140/462 (30%), Gaps = 60/462 (12%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
N E + + + F+ ++ L F +Q E ++
Sbjct: 11 PNLKKANVSQEFTPDQVAEVIKCSENPVYFIKNYIKIVSLDKGLIPFDM-YYFQEEMVQK 69
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+ N P R GK+T+ +LW + ++V LAN +
Sbjct: 70 FHDNRFNIAKLP------------RQSGKSTIVTSYLLWYVLFNANVNVAILANKAATAR 117
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
L + ++L SL +++ T
Sbjct: 118 EML------------QRLQLSYENLPKWLQQGILQWNRGSLELENGSKILAAST------ 159
Query: 182 DTFVGHHNTYGMAIINDEASGTP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGK 236
+ I DE + P D + ++ + I T + + K
Sbjct: 160 -SASAVRGMSFNVIFLDEFAFVPNHVADQFFSSVYPTISSGKSTKVIIISTPHGMNMFYK 218
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + +++ ++ V G D ++ E I RVE +F D+
Sbjct: 219 LWHDAERKANEYIPTEVHWSEVPGRDAAWKEQTIKNTSE--QQFRVEFECEFLGSV-DTL 275
Query: 297 IPLNIIEEALNREPCPDPYA-----------PLIMGCDIAE--EGGDNTVVVLRRGPVIE 343
I + + + +P + ++ D++ G + +V+ +
Sbjct: 276 ISPSKLRTMVYGDPIAEKNGLSMYEKTIQGHTYVITADVSRGVSGDYSAFLVIDTTTIPY 335
Query: 344 HLFDWSKTDL---RTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYR 396
L + + N I + Y ++++ N+ G + D LE +
Sbjct: 336 KLVAKYRNNDIKPILFPNIIVDVARNYNHAFVLVEVNDVGGQVADIIQYDLEYDNLLMCA 395
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
+ G+ + ++T++ +KM+ + N L+++
Sbjct: 396 MRGRAGQQLGQGFSGKKTQMGIKMSSATKQVGCSNLKALLED 437
>gi|238765012|ref|ZP_04625949.1| Terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
gi|238696781|gb|EEP89561.1| Terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
Length = 587
Score = 131 bits (329), Expect = 3e-28, Method: Composition-based stats.
Identities = 57/463 (12%), Positives = 115/463 (24%), Gaps = 38/463 (8%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + I R IG T A L T + A S
Sbjct: 138 DIFLETTFEYQKGWYRAGLQHRIRNILKSRQIGATFYFAREALIDALTTGRNQIFLSA-S 196
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQ-----SLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ Q + + + + + + + Y
Sbjct: 197 KAQAH-VFKNYIIDFARQVEVDLKGDPMVLANGARLFFLGTNIRTAQSYTGNLYLDEYFW 255
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S G L +
Sbjct: 256 IPKFQELRKVASGMSLHKKWRTTYFSTPSSLAHSAYPFW-SGELFNKGRKNKEQHIYVDL 314
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
S + + ++ G + + + Y + + +F
Sbjct: 315 SHSHLMHGALCGDGQWRQIVTVEDALAGGCNLFDLDQLALEYS--PAEYQNLLMCEFVDD 372
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPL----------IMGCDIAEEGGDNTVVVL----- 336
F + ++ D + P +G D + G VVL
Sbjct: 373 KTSVFPFEELQGCMVDSLEEWDDFNPYAYRPFGYRAVWLGYDPSHTGDSAGCVVLAPPLV 432
Query: 337 -RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
I W D T I L EKY + I IDA G + V
Sbjct: 433 PGGKFRILERHQWKGMDFATQAESIKTLTEKYCVEYIGIDATGIGQGVYQLVREFFPAVQ 492
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGE 452
+ +T L +K D + L S + Q+ +++ + + G
Sbjct: 493 EIRYSPE---------IKTALVLKAKDLITSGRLEYDSGHTDITQSFMAIRKTMTASGGR 543
Query: 453 LAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
++ R + A D + M+ P + + + +
Sbjct: 544 ATYQASRSEDASHADIAWAAMHAMINEPLTAGSGYAQSSILDF 586
>gi|320091491|gb|ADW08983.1| terminase-like protein [Clavibacter phage CN77]
Length = 414
Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats.
Identities = 65/368 (17%), Positives = 122/368 (33%), Gaps = 55/368 (14%)
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
G ++ + R ++ TF G + DEA G P + G +T +++
Sbjct: 17 GSGNEAIAFGKRPTDQDIVSTFQGTRKLR-TFVALDEAGGVPPELFTGAEAVMTGQDSKI 75
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFH---------------- 266
I + R +D+W F I + +
Sbjct: 76 VAIGNPDSRGTEFHRIFTVPALMDEWNTFTISAYDLPTVTGEVVYPDHPEKQERMLKGLT 135
Query: 267 --------EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
E + G +V G+FP + ++F P I+ + P +
Sbjct: 136 SLDWIQHKERVWKVGGKPDGRFLAKVLGEFPGETDNAFFPQEAIDRGNDTTID-KPEKGI 194
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLF----------------DWSKTDLRTTNNKISG 362
IMG D+A G D++VV +G + WSK + + ++
Sbjct: 195 IMGVDLARMGDDDSVVYTNQGGRVRLFKGQVRYSDREGTKTTTGVWSKENTVASARRVHA 254
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLG------YHVYRVLGQKRAVDLEFCRNRRTEL 416
+ + + +D++ G D LE L Y + + + + N R E
Sbjct: 255 IAMQIGAKQVRLDSSGIGGAVFDELEQLEEFDGKCYTLVGINNANSSSNNMRWANIRAEN 314
Query: 417 HVKMADWLEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSD 470
H + D L L + L L + ++ + G + I K + + S D D
Sbjct: 315 HDNLRDMLIKGYLDLDPEDTMLRDELLVI-TYKLNLRGAVQITPKDEMKSELNGSPDRLD 373
Query: 471 GLMYTFAE 478
++Y+ A+
Sbjct: 374 AVIYSLAD 381
>gi|238788385|ref|ZP_04632179.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
gi|238723631|gb|EEQ15277.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
Length = 587
Score = 130 bits (327), Expect = 5e-28, Method: Composition-based stats.
Identities = 57/463 (12%), Positives = 115/463 (24%), Gaps = 38/463 (8%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + I R IG T A L T + A S
Sbjct: 138 DIFLETTFEYQKGWYRAGLQHRIRNILKSRQIGATFYFAREALIDALTTGRNQIFLSA-S 196
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQ-----SLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ Q + + + + + + + Y
Sbjct: 197 KAQAH-VFKNYIIDFARQVEVDLKGDPMVLANGARLFFLGTNIRTAQSYTGNLYLDEYFW 255
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S G L +
Sbjct: 256 IPKFQELRKVASGMSLHKKWRTTYFSTPSSLAHSAYPFW-SGELFNKGRKNKEQHIYVDL 314
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
S + + ++ G + + + Y + + +F
Sbjct: 315 SHSHLMHGALCGDGQWRQIVTVEDALAGGCNLFDLDQLALEYS--PAEYQNLLMCEFVDD 372
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPL----------IMGCDIAEEGGDNTVVVL----- 336
F + ++ D + P +G D + G VVL
Sbjct: 373 KTSVFPFEELQGCMVDSLEEWDDFNPYAYRPFGYRAVWLGYDPSHTGDSAGCVVLAPPLV 432
Query: 337 -RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
I W D T I L EKY + I IDA G + V
Sbjct: 433 LGGKFRILERHQWKGMDFATQAESIKTLTEKYCVEYIGIDATGIGQGVYQLVREFFPAVR 492
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGE 452
+ +T L +K D + L S + Q+ +++ + + G
Sbjct: 493 EIRYSPE---------IKTALVLKAKDLITSGRLEYDSGHTDITQSFMAIRKTMTASGGR 543
Query: 453 LAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
++ R + A D + M+ P + + + +
Sbjct: 544 ATYQASRSEDASHADIAWAAMHAMINEPLTAGNGYAQSSILDF 586
>gi|297520464|ref|ZP_06938850.1| hypothetical protein EcolOP_22727 [Escherichia coli OP50]
Length = 313
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/298 (14%), Positives = 93/298 (31%), Gaps = 54/298 (18%)
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
++ F + + F R D ++ + + V E+ +
Sbjct: 5 NGMANPFAQKRH--GGKIPVFTFHWRDDPRKDEEWYRRECEKID-NPVVVAQELDLNYSA 61
Query: 291 QDIDSFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW 348
IP ++ A++ P + D+A+EG D R G ++E++ +W
Sbjct: 62 SAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNAFSTRHGFLLENVREW 121
Query: 349 SK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY-------------- 392
S +D+ + K+ G E+ + D + GA +
Sbjct: 122 SGVGSDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNVARRPSILATP 181
Query: 393 -------------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE-------FASLINH 432
V GQ ++ +F N + + ++ + N
Sbjct: 182 FRGSGAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMAYNP 241
Query: 433 SGLIQ------------NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+I S ++ + G++ I K+ G +S + +D +M +A
Sbjct: 242 DEIISISSSMALKDKLIIELSQPTYSINGVGKIVI-DKQPDGTRSPNLADSVMINYAP 298
>gi|326784562|ref|YP_004324947.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM7]
gi|310004595|gb|ADO98987.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM7]
Length = 550
Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/441 (14%), Positives = 134/441 (30%), Gaps = 60/441 (13%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ F+ + L F+ +Q E +E + N P
Sbjct: 33 KCSEDPVYFIQTYIKIVSLDRGLIPFAM-YDFQSEMVEKFHDNRFNIAKLP--------- 82
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R GK+T+ +LW + + ++V LAN + L +
Sbjct: 83 ---RQTGKSTIVTSYLLWYVLFKANVNVAILANKAATSREML------------QRLQLS 127
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
++L SL +++ T S I DE +
Sbjct: 128 YENLPKWLQQGILQWNRGSLELENGSKIMAASTSS-------SAVRGMSFNVIFLDEFAF 180
Query: 203 TP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
P D + ++ + I T + + K + + +++ ++
Sbjct: 181 VPNHIADQFFSSVYPTISSGKSTKVIIISTPHGMNMFYKLWHDAERGKNEYIPTEVHWSA 240
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP----- 312
V G D ++ + IA +VE +F D+ I + + +P
Sbjct: 241 VPGRDAAWKDQTIANTSE--QQFKVEFECEFLGSV-DTLISPSKLRTMPYEDPIIQNRGL 297
Query: 313 ------DPYAPLIMGCDIAE--EGGDNTVVVLRRGPVIEHLFDWSKTDLRT---TNNKIS 361
+ I+ D+A + ++ V L + + N I
Sbjct: 298 AVYKQVEKDHNYIVTVDVARGVSQDYSAFCIIDTTTVPYELVAKYRNNDIKPIIFPNVIV 357
Query: 362 GLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ + Y ++ + N+ G + D LE + G+ + ++T+L
Sbjct: 358 DVAKNYNNAYVLCEVNDIGGQVADIIQFDLEYENLLQVAMRGRAGQQLGQGFSGKKTQLG 417
Query: 418 VKMADWLEFASLINHSGLIQN 438
VKM+ ++ N L++
Sbjct: 418 VKMSTAVKAVGCSNLKALLEE 438
>gi|326781864|ref|YP_004322266.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM2]
gi|310003054|gb|ADO97452.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SM2]
Length = 549
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/477 (14%), Positives = 132/477 (27%), Gaps = 71/477 (14%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
N E ++ + K F ++ L F P +Q + +
Sbjct: 10 PNLKKANTPIEFTEEQVIEFLKCKEDPVYFANNYIKIVSLDEGLTQFH-PYHFQEKLINN 68
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+ N P R GK+T +L +++ LAN +
Sbjct: 69 FHNNRFNICKMP------------RQTGKSTTVVSYLLHYAVFNDSVNIGILANKAATAR 116
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
L + LP SL +++ T
Sbjct: 117 ELL-GRLQTAYENLP-----------RWMQQGIIAWNKGSLELENGSKILAAST------ 158
Query: 182 DTFVGHHNTYGMAIINDEASGTP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGK 236
+ + DE + P D + +T N + T + +
Sbjct: 159 -SASAVRGMSFNILFLDEFAFVPNHVADSFFASVYPTITSGKNTKVIIVSTPHGMNHFYR 217
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ K +++ + V G D + E IA +VE +F
Sbjct: 218 MWHDAEKRKNEYIPTDVHWSEVPGRDDKWKETTIANTSE--QQFKVEFECEFLGSVDTLI 275
Query: 297 IPLNI----IEEALNREPCPDPYAP------LIMGCDIAE--EGGDNTVVVLRRGPVIEH 344
P + + + R D Y P +M D+A + V +
Sbjct: 276 APSKLRTLIYDNPIQRNAGLDVYEPPKDKHDYVMTVDVARGVGEDYSAFVCVDITEFPHR 335
Query: 345 LFDWSKTDL---RTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRV 397
+ + + N I + + Y I+ + N+ G + LE + +
Sbjct: 336 IVAKYRNNDIKPMLFPNIIYEVAKNYNSAYILCEVNDIGDQVASILQYDLEYQNLLMCSM 395
Query: 398 LGQKRAVDLEFCRNRRTELHVKM------------ADWLEFASLI-NHSGLIQNLKS 441
G+ + + ++T+L VKM +E LI N +I L +
Sbjct: 396 RGRAGQIVGQGFSGKKTQLGVKMSKTVKKVGSLNLKTLIEEDKLIFNDYEIISELTT 452
>gi|120602517|ref|YP_966917.1| hypothetical protein Dvul_1472 [Desulfovibrio vulgaris DP4]
gi|120562746|gb|ABM28490.1| protein of unknown function DUF264 [Desulfovibrio vulgaris DP4]
Length = 599
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/468 (12%), Positives = 121/468 (25%), Gaps = 46/468 (9%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P +Q + + R IG T A +
Sbjct: 148 PALFQEKLHARYFDYQRQLRAALTHRNRML--LKARQIGATWYFAQEAFENACLTGDNQI 205
Query: 111 ICLANS-ETQL-KTTLWAEVSKWLS-LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS- 166
A ++Q+ + + + L + + S+ +
Sbjct: 206 FLSATKAQSQVFRNYIMQIAGEAFDITLSGNPMVLHTAHGKAELHFLSNSSRSAQSYHGH 265
Query: 167 ---KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ + + + T + H + + + ++ T + L R +
Sbjct: 266 VYIDEFFWITKFKELFKVATGMAAHKRWRRTLFSTPSAITHEAYPLWSGETFQRRFSKPR 325
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P + + + D + R I E + + + R
Sbjct: 326 ----PWPDTEAMRAGVLCP---DTYFRNIITLADAEAGGCDLFDVAQLKLEYTPEEFRQL 378
Query: 284 VCGQFPQQDIDSFI----------PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
+F F P + + +P P P+ G D A G D +
Sbjct: 379 FGCEFIDDTQGVFRLAQLEACMVDPADWQDVRQG-DPHPVGNLPVWGGYDPARSGDDASF 437
Query: 334 VVL----RRGP--VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
VL R G W +I L EKYR + ID G + +
Sbjct: 438 AVLLPDLRDGGGIRCIERHKWKGRSYLWQAERIRELAEKYRFAHLGIDTTGPGIGVFEQV 497
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
+ + ++ + L +K + +E L + + +++
Sbjct: 498 QQFCPVATPINYGVQS---------KAMLVLKAREVIEEGRLQWDAAETDIAHAFMTIRQ 548
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPS 492
G++ + R D + +M+ A P RC
Sbjct: 549 TTTD-RGQITYAATRNATTGHADVAWAIMHALAAEPLARRGASTRCTV 595
>gi|120603805|ref|YP_968205.1| hypothetical protein Dvul_2767 [Desulfovibrio vulgaris DP4]
gi|120564034|gb|ABM29778.1| protein of unknown function DUF264 [Desulfovibrio vulgaris DP4]
Length = 599
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/468 (12%), Positives = 121/468 (25%), Gaps = 46/468 (9%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P +Q + + R IG T A +
Sbjct: 148 PALFQEKLHARYFDYQRQLRAALTHRNRML--LKARQIGATWYFAQEAFENACLTGDNQI 205
Query: 111 ICLANS-ETQL-KTTLWAEVSKWLS-LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS- 166
A ++Q+ + + + L + + S+ +
Sbjct: 206 FLSATKAQSQVFRNYIMQIAGEAFDISLSGNPMVLHTAHGKAELHFLSNSSRSAQSYHGH 265
Query: 167 ---KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ + + + T + H + + + ++ T + L R +
Sbjct: 266 VYIDEFFWITKFKELFKVATGMAAHKRWRRTLFSTPSAITHEAYPLWSGETFQRRFSKPR 325
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P + + + D + R I E + + + R
Sbjct: 326 ----PWPDAEAMRAGVLCP---DTYFRNIITLADAEAGGCDLFDVAQLKLEYTPEEFRQL 378
Query: 284 VCGQFPQQDIDSFI----------PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
+F F P + + +P P P+ G D A G D +
Sbjct: 379 FGCEFIDDTQGVFRLAQLEACMVDPADWQDVRQG-DPHPVGNLPVWGGYDPARSGDDASF 437
Query: 334 VVL----RRGP--VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
VL R G W +I L EKYR + ID G + +
Sbjct: 438 AVLLPDLRDGGGIRCIERHKWKGRSYLWQAERIRELAEKYRFAHLGIDTTGPGIGVFEQV 497
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
+ + ++ + L +K + +E L + + +++
Sbjct: 498 QQFCPVATPINYGVQS---------KAMLVLKAREVIEEGRLQWDAAETDIAHAFMTIRQ 548
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPS 492
G++ + R D + +M+ A P RC
Sbjct: 549 TTTD-RGQITYAATRNATTGHADVAWAIMHALAAEPLARRGASTRCTV 595
>gi|323146129|gb|ADX32368.1| putative terminase ATPase subunit [Cronobacter phage ESSI-2]
Length = 639
Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/456 (12%), Positives = 131/456 (28%), Gaps = 53/456 (11%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
W E + H ++ + K R IG T A+ +
Sbjct: 191 WADEHLFGYQKHLRANIGQQVRNILK-----SRQIGATWYFAFEAFENAVLTGDPQIFLS 245
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHCSL 162
A+ AEV + + + +F + + + S
Sbjct: 246 ASKAQ-------AEVFRSYIVNIAEQYFGITLTGNPIRLSNGAELRFLSTNKNTAQSYSG 298
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ Y + + + H+ + + ++ T + + R
Sbjct: 299 HLYCDEYFWVPNFARLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGEEWKQGSKKR 358
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
+ + + + + ++ G + + E + RY + +
Sbjct: 359 AAVKFPSFDEMRDG-GRLCPDGQWRY-VITMEDAIAGGFNLASIEKLRNRY--NPTTFNM 414
Query: 283 EVCGQFPQQDIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTV 333
F F ++ +E ++ PD P + G D A G +
Sbjct: 415 LYMCVFVDSKDSVFSYGDLEACAVETETWQDHKPDAPRPFGDREVWGGFDPARSGDFSCF 474
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
V++ + +F+W + R +I L +KY + +D G D +
Sbjct: 475 VIVAPPLFAGEKFRVLRVFNWKGMNFRWQAKQIEQLFKKYNFAYLGVDVTGIGQGVFDNI 534
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQ---NLKSLKS 444
+ V AV + + RN + +L +K AD +E + L + + +++
Sbjct: 535 QHFALRV--------AVPIRYDRNTKNQLVLKAADVVESQRIEWDKELKEIPASFMAIRR 586
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
G + + R + + + P
Sbjct: 587 TTTQAGGSMTFVADRSTDTGHAEAFWAIAHALHNEP 622
>gi|308187132|ref|YP_003931263.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1]
gi|308057642|gb|ADO09814.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1]
Length = 587
Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 49/462 (10%), Positives = 119/462 (25%), Gaps = 39/462 (8%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
FM+ + LN + + + R IG T A L T + A+
Sbjct: 140 FMDNCFEYQLNWHKAGLTHRIRNILKS-RQIGATFYFAREALIDALTTGRNQIFLSASKA 198
Query: 118 TQLKTTLWAEVSKWLSLLPNKHW-----FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+ + + + + + Y +
Sbjct: 199 QA--HVFKNYIIDFARQADVDLKGDPIVLPNGARLIFLGTNVRTAQSYTGNLYLDEYFWI 256
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ + + + H + + ++ + G L +
Sbjct: 257 PKFQELRKVASGMSLHKKWRTTYFSTPSALSHSAYPFW-SGELFNKGRRSKDDRIEIDLS 315
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
S + ++ G + + Y + + +F +
Sbjct: 316 HSHLAKGALCGDGQWRQIVTVEDALTGGCNLFDINQLQLEYS--PAEYQNLLMCEFVDDE 373
Query: 293 IDSFIPLNIIEEALNREPCPDP----------YAPLIMGCDIAEEGGDNTV------VVL 336
F + ++ + Y P+ +G D + G +V
Sbjct: 374 ASVFPFAELQTCMIDSLEEWEDFNPYLPRPFAYRPVWIGYDPSHTGDSAGCAVIAPPLVA 433
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ W D I L +KY + I +DA G +
Sbjct: 434 GGKFRVLERHQWRGMDFAAQAKSIEDLTKKYTVEYIGVDATGIGQGVFQLVRQ------- 486
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
A ++++ +T + +K D + L + + Q+ +++ + +
Sbjct: 487 --FYPAAREIKYSPEVKTAMVLKAKDTISSGRLEYDAGATDITQSFMAIRKTMTASGNRS 544
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
E+ R + A D + +M+ P + ++
Sbjct: 545 TYEASRSEEASHADVAWAIMHALLNEPLTAASGGANPSILEF 586
>gi|51597451|ref|YP_071642.1| orf16-like phage protein [Yersinia pseudotuberculosis IP 32953]
gi|51590733|emb|CAH22378.1| Possible [Haemophilus phage HP1] orf16-like phage protein [Yersinia
pseudotuberculosis IP 32953]
Length = 601
Score = 128 bits (320), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/482 (12%), Positives = 131/482 (27%), Gaps = 64/482 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
SW E + HC + + K R +G T A+ V
Sbjct: 142 DSWASEHLFDYQMHCRANKEQNFRHILK-----SRQVGMTYYFAFEAFEDAVLTGDRQVF 196
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHC 160
A+ +E+ K+ + + F + +
Sbjct: 197 FSASRAQ-------SEIFKFYIVEIAQQAFGITLTGNPIKLSNGAVLRFLSTNAGTAQGF 249
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + HN Y + ++ T + E +A
Sbjct: 250 NGHLYGDEIFWIPKFGKFHETASAMATHNKYRTTYFSTPSAKTHPAYPIWTGDTWREDDA 309
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
R + L K + + D E + +Y ++
Sbjct: 310 KRKKAIFPKESELR-KGGILCPDDQWRYIITMEDAIKGGLGALVDIERLRNKY--NATAF 366
Query: 281 RVEVCGQFPQQDIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDN 331
+ QF F + ++ + ++ P P + G D + G ++
Sbjct: 367 AMLYMCQFVDSKDAVFKFSELEKCAVDAGMWQDHDPKAARPFGNREVWGGFDPSRSGDNS 426
Query: 332 TVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
T V++ + ++ W + ++I L+ +Y I ID G D
Sbjct: 427 TFVIVAPPLYDGERFRVLAVYYWQGLNFNYQADQIKQLMRRYNMTYIGIDITGIGRGVFD 486
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCR-NRRTELHVKMADWLEFASLINH-----------S 433
+E R + L +KM D + + +
Sbjct: 487 LVER---------FAPREATPILYTVESKNRLVLKMIDTVSRGRIEWSKDATDECSQERA 537
Query: 434 GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
+ + +++ + L ++R D + + P D ++ R ++
Sbjct: 538 EIAASFMAIRRTTTASGNALTFVAERSDATGHADVFFAISHAVINEP--LDYEYDRPSTW 595
Query: 494 QY 495
+
Sbjct: 596 AF 597
>gi|258545857|ref|ZP_05706091.1| probable terminase (atpase subunit) related protein
[Cardiobacterium hominis ATCC 15826]
gi|258518873|gb|EEV87732.1| probable terminase (atpase subunit) related protein
[Cardiobacterium hominis ATCC 15826]
Length = 595
Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats.
Identities = 60/464 (12%), Positives = 129/464 (27%), Gaps = 39/464 (8%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
F+ + H + + + + R IG T A L T G + I ++
Sbjct: 143 RAFLANIYPHQRAWYEHSKRYEMRQYVKS-RQIGATYYFAQEALITALTT-GKNQIFISA 200
Query: 116 SETQL----KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP-WYSDVLHCSLGIDSKHYS 170
S++Q + L +H +L+ + S + Y
Sbjct: 201 SKSQAHVFKSNIVAFVEKTIGKTLRGEHIKLGPETTLYFLGTNSNTAQSYSGDLYVDEYF 260
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ + + + + H+ + + ++ T + L + I
Sbjct: 261 WIPQFAKIQHVASGMTVHDDRRITYFSTPSTTTHEAYPLWTGQHFNKGRPKSEHINLDVS 320
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ + I+ G D E + ++ + QF
Sbjct: 321 HAALKEGRLCEDGYFRQ--LITIEDAINSGFDRVTLEKLRIKFPPG--QFENLLMCQFVN 376
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL---- 336
F + ++ Y P + +G D + D ++VV+
Sbjct: 377 DGDSIFKMAELQRCMVDAWTVWQDYTPLAARPLGDVPVWIGYDPSRSQDDASLVVIAPPQ 436
Query: 337 RRGPVIEHLF--DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G V + ++ D KI Y I IDA G D + V
Sbjct: 437 VEGGVFRIIDKQSFNGLDFDAQARKIRDFCRMYNVVHIAIDATGIGQAVYDLVRQFFPRV 496
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
++L A + E+ +K + A L + + ++ +
Sbjct: 497 RKILYSVEA---------KNEMVLKAKQLIAHARLQWDNGWTDIAHAFLTIHQAQTGSGR 547
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
++ ++ R D + M+ +P + G +
Sbjct: 548 QVTYKASRTATTGHADLAWATMHALINDPLGQIDEAGFSGRRGF 591
>gi|147671611|ref|YP_001215893.1| terminase [Vibrio cholerae O395]
gi|262167851|ref|ZP_06035552.1| terminase [Vibrio cholerae RC27]
gi|146313994|gb|ABQ18534.1| terminase [Vibrio cholerae O395]
gi|227014845|gb|ACP11054.1| putative terminase, ATPase subunit [Vibrio cholerae O395]
gi|262023759|gb|EEY42459.1| terminase [Vibrio cholerae RC27]
Length = 605
Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats.
Identities = 58/455 (12%), Positives = 118/455 (25%), Gaps = 40/455 (8%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL---KTT 123
N I R IG T A L + A S Q +
Sbjct: 167 YQHTMRNNLHQRTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSA-SRAQADVFRRY 225
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
+ A ++L + + + + + + + + Y + + +
Sbjct: 226 IVAIAKEFLGIEITGNPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKV 285
Query: 182 DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
+ + H + + +S R I +
Sbjct: 286 ASAMATHKKWRKTYFSTPSSKMHPAYPFWTGEKWRGDKTTRKNIEFPTFD--ELRDGGRL 343
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----I 297
I+ G D E + Y F F I
Sbjct: 344 CPDRQWRYVVTIEDAAKGGCDLFDIEELREEYSETD--FNNLFMCVFVDGASSIFEFNKI 401
Query: 298 PLNIIEEALNREPCPDPYAP-----LIMGCDIAEEGGDNT------VVVLRRGPVIEHLF 346
+++ + ++ P+ P + +G D + + +V +
Sbjct: 402 ERCMVDSEIWQDFKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKH 461
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
W + ++IS + E++ + ID GA D L V R
Sbjct: 462 TWRGLSFQHQASEISKVFERFNVTYLGIDITGIGAGVHDLL---------VNKHPRETVA 512
Query: 407 EFCRNR-RTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKG 462
N + L +KM D ++ L + ++K + + +++R +
Sbjct: 513 IHYSNENKNRLVMKMIDIIDGNRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQ 572
Query: 463 AKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEG 497
A D L + P D R ++Q
Sbjct: 573 AGHADDFWALSHALINEP--LDHSTQRKSTWQMAA 605
>gi|253689540|ref|YP_003018730.1| hypothetical protein PC1_3171 [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756118|gb|ACT14194.1| protein of unknown function DUF264 [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 589
Score = 127 bits (318), Expect = 5e-27, Method: Composition-based stats.
Identities = 53/449 (11%), Positives = 113/449 (25%), Gaps = 43/449 (9%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
F+ + + + + + R IG T A L T + A S+
Sbjct: 141 FLSEIFEYQRGWHQAGLQHRIRNILKS-RQIGATFYFAREALIDALTTGRNQIFLSA-SK 198
Query: 118 TQLKTTLWAEVSKWLSLLPNKHW-----FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
Q + + L+ + + + Y +
Sbjct: 199 AQAH-VFKNYIIDFARLVDVDLKGDPMVLPNGARLFFLGTNIRTAQSYTGNLYLDEYFWI 257
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER--NANRFWIMTSNP 230
+ + + + H + + +S + N + +
Sbjct: 258 PKFQELRKVASGMSLHKKWRSTYFSTPSSLAHSAYPFWSGELFNKGRSNKADHLHLDLSH 317
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
LSG W++ + + + + + +F
Sbjct: 318 ANLSGGVLC----GDGQWRQI-VTVEDALSGGCNLFDLDQLMLEYSPAEYQNLLMCEFVD 372
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPL----------IMGCDIAEEGGDNTVVVL---- 336
F + ++ + + P +G D + G VVL
Sbjct: 373 DKASVFPFEELQRCMVDALEEWEDFNPYALRPFAYKPVWIGYDPSHTGDSAGCVVLAPPQ 432
Query: 337 --RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
I F W D + I L EKY + I IDA G +
Sbjct: 433 APGGKFRILERFQWKGMDFAAQADAIKLLTEKYIVEYIGIDATGIGQGVYQLVRGFFPAA 492
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T + +K D + L + + Q+ +++ + +
Sbjct: 493 REIKYSPE---------IKTAMVLKAKDTITSGRLEYDTSHTDITQSFMAIRKTMTASGN 543
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENP 480
E+ R + D + M+ P
Sbjct: 544 RTTYEASRSEEISHADVAWATMHALLNEP 572
>gi|323146172|gb|ADX32410.1| terminase ATPase subunit [Cronobacter phage ENT90]
Length = 587
Score = 126 bits (317), Expect = 6e-27, Method: Composition-based stats.
Identities = 45/438 (10%), Positives = 108/438 (24%), Gaps = 38/438 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW- 140
I R IG T A L T + A+ + + +
Sbjct: 163 ILKSRQIGATFYFAREALIDALTTGRNQIFLSASKAQA--HVFKNYIIDFARQVDVDLKG 220
Query: 141 ----FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ + + + Y + + + + + H +
Sbjct: 221 DPIVLPNGARLIFLGTNVRTAQSYTGNLYLDEYFWIPKFQELRKVASGMSLHKKWRTTYF 280
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
+ +S + G L + + + ++
Sbjct: 281 STPSSLSHSAYPFW-SGELFNKGRRSKADRIEIDLSHTHLAKGALCGDGQWRQIVTVEDA 339
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-- 314
G + + + Y + + +F + F + ++
Sbjct: 340 LTGGCNLFDLDQLQLEYS--PSEYQNLLMCEFVDDEASVFPFAELQTCMIDSLEEWSDFN 397
Query: 315 --------YAPLIMGCDIAEEGGDNTV------VVLRRGPVIEHLFDWSKTDLRTTNNKI 360
Y P+ +G D + G +V + W D I
Sbjct: 398 PYLPRPFDYRPVWIGYDPSHTGDSAGCAVIAPPLVAGGKFRVLERHQWRGMDFAAQAKSI 457
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
L +KY + I +DA G + + +T + +K
Sbjct: 458 EDLTKKYTVEYIGVDATGIGQGVFQLVRQFYPAAREIRYSPE---------VKTAMVLKA 508
Query: 421 ADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
D + L + + Q+ +++ + + E+ R + A D + +M+
Sbjct: 509 KDTISSGRLEYDAGQTDITQSFMAIRKTMTASGNRSTYEASRSEDASHADVAWAIMHALL 568
Query: 478 ENPPRSDMDFGRCPSYQY 495
P + ++
Sbjct: 569 NEPLTAASGGANPSILEF 586
>gi|190572396|ref|YP_001970241.1| putative phage terminase, ATPase subunit (gpp) [Stenotrophomonas
maltophilia K279a]
gi|190010318|emb|CAQ43926.1| putative phage terminase, ATPase subunit (gpp) [Stenotrophomonas
maltophilia K279a]
Length = 597
Score = 126 bits (316), Expect = 8e-27, Method: Composition-based stats.
Identities = 57/477 (11%), Positives = 116/477 (24%), Gaps = 62/477 (12%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
+Q I R IG T A L T
Sbjct: 153 VDGCFDYQR-------DWYRAGNERTRV------ILKSRQIGATFYFAREALIDALTTGR 199
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS------LHPAPWYSDVLHCS 161
+ A S++Q + ++ + ++
Sbjct: 200 NQIFLSA-SKSQAH-IFLGYMRGFVREVLDRDLTGDPITLANGAELFFLGTNARTAQGYH 257
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
+ + + + H + + ++ + + +
Sbjct: 258 GNFYFDEFFWTYGFNQLNKVASGMAMHKKWRKTYFSTPSTMAHEAFDFWTGDRFNKGRPV 317
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT---RTVEGIDPSFHEGIIARYGLDSD 278
I + + +D QI T G D E + Y +
Sbjct: 318 SQQIQL-----DVSHARLMGGRRCEDAIWRQIVTVLDAAGRGCDLFDIEELRRDYSAEE- 371
Query: 279 VTRVEVCGQFPQQDIDSFI-----------PLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
+ +F F + +++ P + +G D AE
Sbjct: 372 -FANLLMCEFVDDSASIFPLTMLQPCQVDSWVEWVDDFKPLAIRPYGDRAVWIGYDPAET 430
Query: 328 GGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA 381
G +VV+ + + D I + +Y I IDA G
Sbjct: 431 GDSAGIVVVAPPLVPGGKFRVLERHQFKGMDFAAQAAFIQQVTLRYWVTYIGIDATGMGT 490
Query: 382 RTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQN 438
+ V +T L +K D ++ L + L Q+
Sbjct: 491 GVAQLVRQFFPGVTIFNYSPE---------VKTRLVLKAFDVIKNERLEYDAGWTDLTQS 541
Query: 439 LKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
L +++ I P+ ++ + R + D + LM+ P + S +
Sbjct: 542 LLAIQKTITPSGRQVTYTAGRSRTTGHADLAWALMHALQNEP--LEGGTAARGSMEI 596
>gi|187476925|ref|YP_784949.1| phage terminase large subunit [Bordetella avium 197N]
gi|115421511|emb|CAJ48020.1| Putative phage terminase large subunit [Bordetella avium 197N]
Length = 512
Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/280 (18%), Positives = 94/280 (33%), Gaps = 23/280 (8%)
Query: 236 KFYEIFNKPLDDWKRFQID-TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F + + +E ++ + + G F D
Sbjct: 230 PFAHNGETIVPRSRTFIPSRIADNPFLMGTGYESVLQSLPE--PLRSQMLYGDFNAGIED 287
Query: 295 ---SFIPLNIIEEALNREPCPDPYAPLI-MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK 350
IP +E A R PD AP+ +G D+A G D T++ R G + +
Sbjct: 288 DPWQVIPTAWVEAAQARWKRPDRLAPMDSLGLDVARGGRDKTILARRHGWWFDEPLVYPG 347
Query: 351 TDLRTTNNKISGLVEKYRPDAII-IDANNTGARTCDYLEMLGYHVYRVLGQKRA-----V 404
D + R A+I +D GA D+L V V + A
Sbjct: 348 KDTPDGPTVAGLAISALRDHAVIHLDVIGVGASPYDFLVTAKQQVVGVNVAEAACGTDKS 407
Query: 405 DLEFCRNRRTELHVKMADWLE-----FASLINHSGLIQNLKSLKSFIVPNTGELAIESKR 459
NRR+EL +M + L+ +L L+ +L + + L + S+
Sbjct: 408 GRLRFFNRRSELWWRMREALDPIHNTGIALPPDPRLLADLTAP--TWSLSGATLKVASRE 465
Query: 460 ---VKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYE 496
K +S D+ + + P R+ ++ + +
Sbjct: 466 DIIDKIGRSPDFGSAYVLALMDTPKRAAVEALGQARSRLD 505
>gi|298480040|ref|ZP_06998239.1| PBSX family phage terminase [Bacteroides sp. D22]
gi|298273849|gb|EFI15411.1| PBSX family phage terminase [Bacteroides sp. D22]
Length = 476
Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 60/411 (14%), Positives = 125/411 (30%), Gaps = 47/411 (11%)
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ A +L++ PG AE+ + + +
Sbjct: 64 KSWTGAVWLLFMCLCYPGSKWFIGR-----------AELKRITQSTLITFYKVCNQYGVD 112
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209
+ + + + + + + + + + +E
Sbjct: 113 DTLYKYNGQYNYIEFFNGSRIDLLDLQYKPGDPLYERYGSIEYTGGWIEEGGEVNFGAYD 172
Query: 210 GILGFL-----TERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDT--RTV 258
+ + E R +T NP++ Y+ F KP + + +
Sbjct: 173 TLKTRIGRHLNNELGLRRKLFITCNPKK--NWMYDTFYKPDKKGELPEYMYYLACLVQEN 230
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQF-PQQDIDSFIPLNIIEEALNREPCPDPYAP 317
IDP + EG+ D + G + + ++ + I E +
Sbjct: 231 PFIDPDYIEGLK--TTKDKVKRERLLKGNWEYDDNPNALCSHDAICEIFGNKISIKTGTN 288
Query: 318 LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR--PDAIIID 375
I G DIA G D + + G I L + + I +KYR I+D
Sbjct: 289 YITG-DIARFGADYARLAVWDGWHIIELQCFPVSKTTDIQTWIINKQKKYRIPNHKCIVD 347
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL 435
+ G D + + + E +N +T+ K+AD + + L
Sbjct: 348 EDGVGGGVVD-----NCDIQGFVNNSTPFNGENYQNLQTQCGYKLADHINATEVGIDEDL 402
Query: 436 IQ---------NLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
I L+ L+++ + G+L ++ K ++ S D+ D +
Sbjct: 403 ISTADKEEIIRELEQLQTWKADSDGKLKLKPKEEIKMDIGCSPDWRDMFLM 453
>gi|153816772|ref|ZP_01969439.1| terminase [Vibrio cholerae NCTC 8457]
gi|126512575|gb|EAZ75169.1| terminase [Vibrio cholerae NCTC 8457]
Length = 605
Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/457 (12%), Positives = 122/457 (26%), Gaps = 44/457 (9%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL---KTT 123
N I R IG T A L + A S Q +
Sbjct: 167 YQHTMRNNLHQRTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSA-SRAQADVFRRY 225
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
+ A ++L + + + + + + + + Y + + +
Sbjct: 226 IVAIAKEFLGIEITGNPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKV 285
Query: 182 DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
+ + H + + +S + R I + +
Sbjct: 286 ASAMATHKKWRKTYFSTPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPT----FDELRDGG 341
Query: 242 NKPLDDWKRFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF--- 296
D R+ + G D E + Y F F
Sbjct: 342 RLCPDRQWRYVVTIEDAAKCGCDLFDIEELREEYSETD--FNNLFMCVFVDGASSIFEFN 399
Query: 297 -IPLNIIEEALNREPCPDPYAP-----LIMGCDIAEEGGDNT------VVVLRRGPVIEH 344
I +++ + ++ P+ P + +G D + + +V +
Sbjct: 400 KIERCMVDSEIWQDYKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLE 459
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
W + ++IS + E++ + ID GA D L V R
Sbjct: 460 KHTWRGLSFQHQASEISKVFERFNVTYLGIDITGIGAGVHDLL---------VNKHPRET 510
Query: 405 DLEFCRNR-RTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRV 460
N + L +KM D ++ L + ++K + + +++R
Sbjct: 511 VAIHYSNENKNRLVMKMIDIIDGNRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERS 570
Query: 461 KGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEG 497
+ A D L + P D R ++Q
Sbjct: 571 EQAGHADDFWALSHALINEP--LDHSTKRKSTWQMAA 605
>gi|17975126|ref|NP_536648.1| putative terminase, ATPase subunit [Vibrio phage K139]
gi|153820795|ref|ZP_01973462.1| terminase [Vibrio cholerae B33]
gi|165970256|ref|YP_001650887.1| putative terminase ATPase subunit [Vibrio phage kappa]
gi|229512054|ref|ZP_04401533.1| hypothetical protein VCE_003464 [Vibrio cholerae B33]
gi|229519190|ref|ZP_04408633.1| hypothetical protein VCC_003218 [Vibrio cholerae RC9]
gi|229607255|ref|YP_002877903.1| hypothetical protein VCD_002166 [Vibrio cholerae MJ-1236]
gi|254849294|ref|ZP_05238644.1| terminase [Vibrio cholerae MO10]
gi|17865408|gb|AAL47515.1|AF125163_21 orf16 [Vibrio phage K139]
gi|126521587|gb|EAZ78810.1| terminase [Vibrio cholerae B33]
gi|165292233|dbj|BAF98815.1| putative terminase ATPase subunit [Vibrio phage kappa]
gi|229343879|gb|EEO08854.1| hypothetical protein VCC_003218 [Vibrio cholerae RC9]
gi|229352019|gb|EEO16960.1| hypothetical protein VCE_003464 [Vibrio cholerae B33]
gi|229369910|gb|ACQ60333.1| hypothetical protein VCD_002166 [Vibrio cholerae MJ-1236]
gi|254844999|gb|EET23413.1| terminase [Vibrio cholerae MO10]
Length = 605
Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 61/456 (13%), Positives = 122/456 (26%), Gaps = 42/456 (9%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL---KTT 123
N I R IG T A L + A S Q +
Sbjct: 167 YQHTMRNNLHQRTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSA-SRAQADVFRRY 225
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
+ A ++L + + + + + + + + Y + + +
Sbjct: 226 IVAIAKEFLGIEITGNPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKV 285
Query: 182 DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
+ + H + + +S + R I L
Sbjct: 286 ASAMATHKKWRKTYFSTPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLC- 344
Query: 242 NKPLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---- 296
P W+ I+ G D E + Y F F
Sbjct: 345 --PDKQWRYVVTIEDAAKGGCDLFDIEELREEYSETD--FNNLFMCVFVDGASSIFEFNK 400
Query: 297 IPLNIIEEALNREPCPDPYAP-----LIMGCDIAEEGGDNT------VVVLRRGPVIEHL 345
I +++ + ++ P+ P + +G D + + +V +
Sbjct: 401 IERCMVDSDIWQDYKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEK 460
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
W + ++IS + E++ + ID GA D L V R
Sbjct: 461 HTWRGLSFQHQASEISKVFERFNVTYLGIDITGIGAGVHDLL---------VNKHPRETV 511
Query: 406 LEFCRNR-RTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVK 461
N + L +KM D ++ L + ++K + + +++R +
Sbjct: 512 AIHYSNENKNRLVMKMIDIIDGNRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSE 571
Query: 462 GAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEG 497
A D L + P D R ++Q
Sbjct: 572 QAGHADDFWALSHALINEP--LDHSTQRKSTWQMAA 605
>gi|308097723|gb|ADO14402.1| AB1gp31 [Acinetobacter phage AB1]
Length = 313
Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 49/292 (16%), Positives = 90/292 (30%), Gaps = 50/292 (17%)
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+ P + I+ + + + I + D + G D S
Sbjct: 5 VWQNFVVDPPANTLIRHINYNENPFLSQTALDVIADKKRRDPEGFAHIYDGMPRADDDMS 64
Query: 296 FIPLNIIEEALNREP--CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
I + +E AL+ D +G D+A+ G D +V R+G V +W +
Sbjct: 65 IIKASWVEAALDAHKLLNLDDTGRSYLGFDVADAGKDKCALVHRKGIVAYWSDEWKARED 124
Query: 354 RTTNNKISGLVEKYRPDAII-IDANNTGARTCDYLEML-----------------GYHVY 395
+ E R +A+I D+ GA + L G H
Sbjct: 125 ELLKSATRTYNEAIRLNALIHYDSTGVGAGVGAKVNELNKEKKTNVQHSKFVAGGGVHEP 184
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMAD----------WLEFA----------------SL 429
Q + + +F N + + +AD ++ +
Sbjct: 185 DKFYQPKITNKDFFANAKAQAWWLVADKFRLTYQVIQAIKNGTEIPKHKPEDLISISSDM 244
Query: 430 INHSGLIQNLKSLKSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAE 478
N L L S+ G + +ESK+ + KS + +D + +A
Sbjct: 245 PNLHRLKVEL-SIPHRDEDRLGRVMVESKQDLAKRDVKSPNLADAFIMAYAP 295
>gi|296103195|ref|YP_003613341.1| hypothetical protein ECL_02853 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295057654|gb|ADF62392.1| hypothetical protein ECL_02853 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 591
Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/460 (11%), Positives = 126/460 (27%), Gaps = 57/460 (12%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H ++ + K R IG T A+ +
Sbjct: 140 DTWAEEHLFEYQKHLRRNIGQLVRNILK-----SRQIGATWYFAFEAFENAVMTGDPQIF 194
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHC 160
A+ AEV + + + +F + + +
Sbjct: 195 LSASKAQ-------AEVFRSYIVNIAEQYFGITLTGNPIRLSNGAELRFLSTNKNTAQSY 247
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
S + Y + + + H+ + + ++ T + +
Sbjct: 248 SGHLYCDEYFWVPNFAKLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGEEWKQGSR 307
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
R I + + + ++ G + + E + RY ++
Sbjct: 308 KRAAIKFPLFDEMRDG-GRLCPDGQWRY-VITMEDAIAGGFNLANIEKLRNRY--NTATF 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEA---LNREPCPDPY-------APLIMGCDIAEEGGD 330
+ F F + +E ++ DP P+ G D A G
Sbjct: 364 DMLYMCVFVDSKDSVF-SFSDLEACGVEMDTWQDHDPDAKRPFGDRPVWGGFDPARSGDL 422
Query: 331 NTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+ V++ + + W + R +I L ++Y + +D G
Sbjct: 423 SCFVIVAPPMFAVEKFRVLKVIYWKGMNFRYQAKQIEKLFDQYNFTYLGVDVTGIGQGVF 482
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSGLIQ---NLK 440
D ++ + V N + +L +K AD +E + L + +
Sbjct: 483 DNIQ---------HFAMKVVVPIRYDMNTKNQLVLKAADVVESQRIEWDKNLKEIPASFM 533
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
S++ + + + R + + + + P
Sbjct: 534 SVRRTTTNSGNAMTFVADRSQDTGHAEAFWAITHALHNEP 573
>gi|167763812|ref|ZP_02435939.1| hypothetical protein BACSTE_02192 [Bacteroides stercoris ATCC
43183]
gi|167697928|gb|EDS14507.1| hypothetical protein BACSTE_02192 [Bacteroides stercoris ATCC
43183]
Length = 476
Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/411 (14%), Positives = 125/411 (30%), Gaps = 47/411 (11%)
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ A +L++ PG AE+ + + +
Sbjct: 64 KSWTGAVWLLFMCLCYPGSKWFIGR-----------AELKRITQSTLITFYKVCNQYGVD 112
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209
+ + + + + + + + + + +E
Sbjct: 113 DTLYKYNGQYNYIEFFNGSRIDLLDLQYKPGDPLYERYGSIEYTGGWIEEGGEVNFGAYD 172
Query: 210 GILGFL-----TERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDT--RTV 258
+ + E R +T NP++ Y+ F KP + + +
Sbjct: 173 TLKTRIGRHLNNELGLRRKLFITCNPKK--NWMYDTFYKPDKKGELPEYMYYLACLVQEN 230
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQF-PQQDIDSFIPLNIIEEALNREPCPDPYAP 317
IDP + EG+ D + G + + ++ + I E +
Sbjct: 231 PFIDPDYIEGLK--TTKDKVKRERLLKGNWEYDDNPNALCSHDAICEIFGNKISIKTGTN 288
Query: 318 LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR--PDAIIID 375
I G DIA G D + + G I L + + I +KYR I+D
Sbjct: 289 YITG-DIARFGADYARLAVWDGWHIIELQCFPVSKTTDIQTWIINKQKKYRIPNHKCIVD 347
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL 435
+ G D + + + E +N +T+ K+AD + + L
Sbjct: 348 EDGVGGGVVD-----NCDIQGFVNNSTPFNGENYQNLQTQCGYKLADHINATEVGIDEDL 402
Query: 436 IQ---------NLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
I L+ L+++ + G+L ++ K ++ S D+ D +
Sbjct: 403 ISTADKEEIIRELEQLQTWEADSDGKLKLKPKEEIKMDIGCSPDWRDMFLM 453
>gi|315180730|gb|ADT87644.1| terminase [Vibrio furnissii NCTC 11218]
Length = 607
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 54/440 (12%), Positives = 109/440 (24%), Gaps = 40/440 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL---KTTLWAEVSKWLSLLPNK 138
I R IG T A L + A S Q + + A ++L L +
Sbjct: 177 ILKSRQIGATYYFAGEALEQAILTGDNQIFLSA-SRAQAEVFRRYIVALAKEFLDLELSG 235
Query: 139 HWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ + + + + + Y + + + + + H +
Sbjct: 236 NPMTLSNGAELHFLSTNGKTAQSYHGHVYVDEYFWIGKFDELNKVASAMATHKKWRKTYF 295
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
+ +S R I + I+
Sbjct: 296 STPSSKMHAAYPFWTGDKWRGDKTTRKNIEFPTFD--ELRDGGRLCPDRQWRYVVTIEDA 353
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---------IPLNIIEEALN 307
G D E + Y F F + I ++
Sbjct: 354 AKGGCDLFDIEELREEYSEHD--FNNLFMCIFVDGASSIFEFNKVQKCMVDAGIWQDFKA 411
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNT------VVVLRRGPVIEHLFDWSKTDLRTTNNKIS 361
P + +G D + + +V + W + ++I
Sbjct: 412 SAKRPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAAEKFRVLEKHTWRGLSFQHQASEID 471
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNR-RTELHVKM 420
+ E++ + ID GA D L R N + L +KM
Sbjct: 472 KVFERFNVTYLGIDITGIGAGVYDLLS---------NKHPRETVAIHYSNENKNRLVMKM 522
Query: 421 ADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
D ++ L + + ++K + + ++ R + D L +
Sbjct: 523 IDVIDGQRLQFDAGMKETAMSFMAIKRTSTNSGNMMTFKADRSELVGHADDFWALSHALI 582
Query: 478 ENPPRSDMDFGRCPSYQYEG 497
P D R + + G
Sbjct: 583 NEP--LDHTTKRKSRWAFTG 600
>gi|169794751|ref|YP_001712544.1| phage-related terminase, ATPase subunit (GPP-like) [Acinetobacter
baumannii AYE]
gi|169147678|emb|CAM85541.1| phage-related terminase, ATPase subunit (GPP-like) [Acinetobacter
baumannii AYE]
Length = 604
Score = 124 bits (311), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/452 (11%), Positives = 119/452 (26%), Gaps = 46/452 (10%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ------LKTTLWAEV 128
E A+ R IG T A L T + A+ +K + +
Sbjct: 167 REQRNRAVLKSRQIGATFYFAREALIKAVTTGRNQIFLSASKAQAHGFKTYIKNFVMQSI 226
Query: 129 SKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
L P + + + + + + ++ + +
Sbjct: 227 EIDLQGDPISITLPCGNTVQLIFLGTNAKTAQSYHGDLYFDEFFWVHGFATLKKVASAMA 286
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
Y + +S T + + + +
Sbjct: 287 AQKQYKKTYFSTPSSKTHEAHAFWTGDAFNKGRTKENRVEIDTSHAN---LRDGALCGDK 343
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEA 305
W+ ++ + E I +S +F F PL++I+
Sbjct: 344 MWR-HIVNIQDAERQGCDLF-DIEELIAENSPEEFANLYMCEFVDDGHSVF-PLSVIQPC 400
Query: 306 LNREPC------------PDPYAPLIMGCDIAEEGGDN--TVVVLRR----GPVIEHLFD 347
+ P P+ +G D AE G V+ +
Sbjct: 401 MVDSWEVWSKDFKPLALRPFGNKPVWIGYDPAESGDSAGLVVIAPPEPDYPKFRLLEHHQ 460
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLE 407
+ D + I L KY I +D + G + ++
Sbjct: 461 FKGMDFASQAQYIKKLTTKYNVKYIGLDKSGMGTGVAQLVLDFFPNLTTFNYS------- 513
Query: 408 FCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAK 464
+ +T+L +K D + + + ++ +++ + + ++ E+ R +
Sbjct: 514 --VDVKTQLVMKAMDVINKERFEFDAGSTDVAMSIMAIRKTLTASQRQMTFEASRAENIG 571
Query: 465 STDYSDGLMYTFA-ENPPRSDMDFGRCPSYQY 495
D + + + FA E D + S +
Sbjct: 572 HADLAFAIFHAFANEPLTLDDQTKSKKSSMEI 603
>gi|323183894|gb|EFZ69285.1| terminase, ATPase subunit [Escherichia coli 1357]
Length = 590
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 56/453 (12%), Positives = 115/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYCSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + H+ + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASHSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|317049635|ref|YP_004117283.1| hypothetical protein Pat9b_3434 [Pantoea sp. At-9b]
gi|316951252|gb|ADU70727.1| protein of unknown function DUF264 [Pantoea sp. At-9b]
Length = 588
Score = 124 bits (310), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/468 (11%), Positives = 126/468 (26%), Gaps = 48/468 (10%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E ++ + + + + R IG T A L +
Sbjct: 132 QIEKLQEIFHGSMFGYQRQWWDAGNKHRIRNVLKSRQIGATYYFAREALIDALITGRNQI 191
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEM--QSLSLHPAPWYSDVLHCSLGIDSK 167
A+ + + E +K + + + + +
Sbjct: 192 FLSASKAQAHVFKQYIIEFAKEVDVELKGDPMTLFNGAGLYFLGTNARTAQSYHGNLYLD 251
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + + + + H + + +S T A +
Sbjct: 252 EYFWIPKFQELRKVASGMALHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADRVDI 311
Query: 228 --SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
++P G+F + D R + + + R + +
Sbjct: 312 DLTHPNLAPGRFCD------DGQFRQIVTVEDAVRGGCNLFDLDQLRMEYSPPEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAE-EGGDNTV 333
+F F PL ++++ + + +G D A+ ++
Sbjct: 366 CEFVDDLASVF-PLQLLQKCMVDSWEVWTDFEALALRPFGWREVWIGYDPAKGTQNGDSA 424
Query: 334 VVLRR--------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
+ I W D R I L ++Y I ID+ G +
Sbjct: 425 GCVVIAPPAVPGGKFRILERHQWRGMDFRAQAESIRKLTQQYNVTYIGIDSTGVGLGVYE 484
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSL 442
++M V + N + L +K D + L + + Q+ ++
Sbjct: 485 NVKMFFPAVKEFVYNP---------NVKNALVLKAFDIISGGRLEFDAGHLDIAQSFMAI 535
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
+ + E+ R + A D + M+ A P + + R
Sbjct: 536 RRTTTASGNRPTYEASRSEEASHADLAWATMHALANEPLQGEAAHTRN 583
>gi|160876026|ref|YP_001555342.1| hypothetical protein Sbal195_2916 [Shewanella baltica OS195]
gi|160861548|gb|ABX50082.1| protein of unknown function DUF264 [Shewanella baltica OS195]
Length = 589
Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats.
Identities = 50/439 (11%), Positives = 111/439 (25%), Gaps = 40/439 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-ETQLKTTLWAEVSKWLSLLPNKHW 140
I R IG T A + + A+ + + + K ++ + K
Sbjct: 164 ILKSRQIGATYFFAHEAIIDALLTGRNQIFLSASKAQAHVFKQYIIQFVKDVTGIELKGD 223
Query: 141 FEMQ---SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ ++ + Y + + + + + H + I+
Sbjct: 224 PIVLFNGAILYFLGTNARTAQSYHGNLYLDEYFWIHKFQEFRKVASGMAIHAKWRQTYIS 283
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
+S T D I + D R +
Sbjct: 284 TPSSITHDAYPFWTGTLFNRGRPKADRIEIDVSHSA----LANGRRCEDGQWRQVVTVDD 339
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
+ + D + +F + F + + ++ Y P
Sbjct: 340 AIRKGCNLFDPDTLHLEYSPDEYSNLLMCEFIDDTMSVFPMVMMQRCMVDSWEVWTDYKP 399
Query: 318 ----------LIMGCDIAEEGGDNTVVVLRR--------GPVIEHLFDWSKTDLRTTNNK 359
+ +G D + G ++ + + W+ D
Sbjct: 400 FAPRPLAHREVWIGYDPNKGGKGDSAGCIVICPPAVPGGKFRVIEKHRWNGMDFEAQAKA 459
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I + KY I ID G ++ V L ++++ +K
Sbjct: 460 IQDICNKYNVTFIGIDTTGLGEAVYQLVKKFFPQVTPFLYNPV---------LKSQMVIK 510
Query: 420 MADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
D + L + L Q S++ + + ++ ES R + D + M+
Sbjct: 511 AYDVISKGRLEYDAGWTDLAQAFMSIRKTLTASGKQVTYESARSEEISHADIAWAAMHAL 570
Query: 477 AENPPRSDMDFGRCPSYQY 495
P D + +
Sbjct: 571 YNEP--LDTSGTSTSTLEI 587
>gi|315268220|gb|ADT95073.1| terminase, ATPase subunit [Shewanella baltica OS678]
Length = 589
Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats.
Identities = 50/439 (11%), Positives = 111/439 (25%), Gaps = 40/439 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-ETQLKTTLWAEVSKWLSLLPNKHW 140
I R IG T A + + A+ + + + K ++ + K
Sbjct: 164 ILKSRQIGATYFFAHEAIIDALVTGRNQIFLSASKAQAHVFKQYIIQFVKDVTGIELKGD 223
Query: 141 FEMQ---SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ ++ + Y + + + + + H + I+
Sbjct: 224 PIVLHNGAILYFLGTNARTAQSYHGNLYLDEYFWIHKFQEFRKVASGMAIHAKWRQTYIS 283
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
+S T D I + D R +
Sbjct: 284 TPSSITHDAYPFWTGKLFNRGRPKADRIEIDVSHSA----LANGRRCEDGQWRQVVTVDD 339
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
+ + D + +F + F + + ++ Y P
Sbjct: 340 AIRKGCNLFDPDTLHLEYSPDEYSNLLMCEFIDDTMSVFPMVMMQRCMVDSWEVWTDYKP 399
Query: 318 ----------LIMGCDIAEEGGDNTVVVLRR--------GPVIEHLFDWSKTDLRTTNNK 359
+ +G D + G ++ + + W+ D
Sbjct: 400 FAPRPLAHREVWIGYDPNKGGKGDSAGCIVICPPAVPGGKFRVIEKHRWNGMDFEAQAKA 459
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I + KY I ID G ++ V L ++++ +K
Sbjct: 460 IQDICNKYNVTFIGIDTTGLGEAVYQLVKKFFPQVTPFLYNPV---------LKSQMVIK 510
Query: 420 MADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
D + L + L Q S++ + + ++ ES R + D + M+
Sbjct: 511 AYDVISKGRLEYDAGWTDLAQAFMSIRKTLTASGKQVTYESARSEEISHADIAWAAMHAL 570
Query: 477 AENPPRSDMDFGRCPSYQY 495
P D + +
Sbjct: 571 YNEP--LDTSGTSTSTLEI 587
>gi|200389255|ref|ZP_03215867.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|199606353|gb|EDZ04898.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
Length = 591
Score = 123 bits (308), Expect = 8e-26, Method: Composition-based stats.
Identities = 53/455 (11%), Positives = 122/455 (26%), Gaps = 47/455 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H ++ + K R IG T A+ +
Sbjct: 140 DTWAEEHLFEYQKHLRRNIGQLVRNILK-----SRQIGATWYFAFEAFENAVMTGDPQIF 194
Query: 112 CLANSETQ------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ + L+ P + + + + S +
Sbjct: 195 LSASKVQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELR--FLSTNKNTAQSYSGHLY 252
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + H+ + + ++ T + + R I
Sbjct: 253 CDEYFWVPNFTKLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGDEWKQGSKKRTAI 312
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
L + + ++ G + + E + RY ++ +
Sbjct: 313 KFPTFDELRDG-GRVCPDGQWRY-VITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYM 368
Query: 286 GQFPQQDIDSFIPLNIIEEA---LNREPCPDPY-------APLIMGCDIAEEGGDNTVVV 335
F F + +E ++ +P P+ G D A G + V+
Sbjct: 369 CVFVDNKDSVF-SFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVI 427
Query: 336 L------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + + W + R +I L +KY + +D G D ++
Sbjct: 428 VAPPMFAVEKFRVLKVIYWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGVFDNIQ- 486
Query: 390 LGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSF 445
R N + +L +K AD +E + L + + S++
Sbjct: 487 --------HFAMRVAVAIRYDLNTKNQLVLKAADVVESQRIEWDKNLKEIPASFMSVRRT 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + R + + + + P
Sbjct: 539 TTQSGNAMTFVADRSQDTGHAEAFWAITHALHNEP 573
>gi|194443211|ref|YP_002041983.1| hypothetical protein SNSL254_A2937 [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194401874|gb|ACF62096.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
Length = 591
Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats.
Identities = 53/455 (11%), Positives = 122/455 (26%), Gaps = 47/455 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H ++ + K R IG T A+ +
Sbjct: 140 DTWAEEHLFEYQKHLRRNIGQLVRNILK-----SRQIGATWYFAFEAFENAVMTGDPQIF 194
Query: 112 CLANSETQ------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ + L+ P + + + + S +
Sbjct: 195 LSASKVQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELR--FLSTNKNTAQSYSGHLY 252
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + H+ + + ++ T + + R I
Sbjct: 253 CDEYFWVPNFTKLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGDEWKQGSKKRTAI 312
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
L + + ++ G + + E + RY ++ +
Sbjct: 313 KFPTFDELRDG-GRVCPDGQWRY-VITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYM 368
Query: 286 GQFPQQDIDSFIPLNIIEEA---LNREPCPDPY-------APLIMGCDIAEEGGDNTVVV 335
F F + +E ++ +P P+ G D A G + V+
Sbjct: 369 CVFVDNKDSVF-SFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVI 427
Query: 336 L------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + + W + R +I L +KY + +D G D ++
Sbjct: 428 VAPPMFAVEKFRVLKVIYWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGVFDNIQ- 486
Query: 390 LGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSF 445
R N + +L +K AD +E + L + + S++
Sbjct: 487 --------HFAMRVAVAIRYDLNTKNQLVLKAADVVESQRIEWDKNLKEIPASFMSVRRT 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + R + + + + P
Sbjct: 539 TTQSGNAMTFVADRSQDTGHAEAFWAITHALHNEP 573
>gi|237745794|ref|ZP_04576274.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229377145|gb|EEO27236.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 585
Score = 123 bits (307), Expect = 8e-26, Method: Composition-based stats.
Identities = 53/450 (11%), Positives = 119/450 (26%), Gaps = 44/450 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ NS N+ + K R IG T A L G + A S
Sbjct: 142 LFDYQKEWWNSRNSRTRAILK-----SRQIGATWYFAREALMDAVLTGGNQIFLSA-SRA 195
Query: 119 QLK-----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
Q +A+ + + L + + +
Sbjct: 196 QAYVFRQYIVQFAKEATGVELKGDPIVLSNGAHLYFLGTNARTAQGYHGNFYFDEFFWTF 255
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + H + + ++ + + +R + +
Sbjct: 256 KFEELNKVASGMALHKRWRKTYFSTPSAMSHEAYPFWTGDAFNKRRRKEEQVRIDVSHK- 314
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQD 292
+ D R + E + + Y D + F
Sbjct: 315 ---WLAEGRLCEDRIWRQIVTIEDAEKGGCDLFDIDELRNYEYSPDQFDNLLMCNFIDDT 371
Query: 293 IDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVLR----- 337
F + ++ + Y P+ +G D + G VV+
Sbjct: 372 ASVFPLSELQRCMVDSWEAWNDYKPFTARPFGNRPVWVGYDPSRSGDSAGCVVMAPPLTF 431
Query: 338 -RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
I + D +I + +KY + I IDA G + + V +
Sbjct: 432 PGKFRIIEKHQYRGMDFAAQAEQIRQITQKYNVEYIGIDATGMGLGVYEIVRQFYPAVTK 491
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
+L + + + +K D + L + + Q+ S++ + + ++
Sbjct: 492 ILYNPES---------KGRMVLKAQDVIRNGRLEFDAGSTDIAQSFMSIRKTLTVSGQQV 542
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRS 483
++ R + D + +M+ P
Sbjct: 543 TYDAGRSETTGHADLAWAVMHALDHEPLAG 572
>gi|300715671|ref|YP_003740474.1| Terminase, ATPase [Erwinia billingiae Eb661]
gi|299061507|emb|CAX58621.1| Terminase, ATPase subunit [Erwinia billingiae Eb661]
Length = 588
Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats.
Identities = 55/461 (11%), Positives = 120/461 (26%), Gaps = 39/461 (8%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q F + + N N + + R IG T A L T + A
Sbjct: 137 QEVFHGSMFGYQRNWWEAGNRHRIR-NVLKSRQIGATFYFAREALIDALTTGRNQIFLSA 195
Query: 115 NS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSKHYST 171
+ + + E ++ + + + + + + Y
Sbjct: 196 SKAQAHVFKQYIIEFAREVDVDLKGDPMTLSNGACLYFLGTNARTAQSYHGNLYLDEYFW 255
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ R + + + H + + +S T A +
Sbjct: 256 IPRFQELRKVASGMALHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKTDRVDIDLTH 315
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
D R + + + R + + +F
Sbjct: 316 GFLSPGKFC----DDGQYRQIVTVEDAVRGGCNLFDIDQLRLEYSPPEYQNLLMCEFIDD 371
Query: 292 DIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTVVVL--- 336
F ++ ++ + + +G D A+ + GD+ V+
Sbjct: 372 LASVFPLADLQACMVDSWEVWQDFEALALRPFGWREVWIGYDPAKGTQHGDSAGCVVIAP 431
Query: 337 ----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
I W D R + I L +Y I ID+ G + ++M
Sbjct: 432 PSVPGGKFRILERHQWRGMDFRAQADAIKELTRQYNVTYIGIDSTGVGHGVYENVKMFFP 491
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPN 449
V + N + L +K D + L + + Q+ +++ +
Sbjct: 492 AVKEFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRATTAS 542
Query: 450 TGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
E+ R + A D + M+ + P + +
Sbjct: 543 GNRPTYEASRSEEASHADLAWATMHALSNEPLQGEAAHTSN 583
>gi|241763591|ref|ZP_04761642.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
gi|241367184|gb|EER61538.1| phage terminase large subunit [Acidovorax delafieldii 2AN]
Length = 521
Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats.
Identities = 56/240 (23%), Positives = 92/240 (38%), Gaps = 24/240 (10%)
Query: 274 GLDSDVTRVEVCGQFPQQDID---SFIPLNIIEEALNREPCPDPYAPL-IMGCDIAEEGG 329
L + + G F D IP ++ A R P+ ++G D A G
Sbjct: 266 SLPEPLRSQMLRGDFSAGAADPAWQLIPTEWVKAAQARWQPRQDKGPMTVLGLDPARGGT 325
Query: 330 DNTVVVLRRGPVIEHLFDWSKT---DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
D T V R + L D TT + LV I +DA G+ D+
Sbjct: 326 DKTSVARRHDCWFDVLISEPGIVTKDGPTTAAFTAPLVR--NGAPIAVDAIGIGSSALDF 383
Query: 387 LEMLGYHVYRVLGQKRAVDLE-----FCRNRRTELHVKMADWL-----EFASLINHSGLI 436
++ LG VY V+G +R+ ++ RNRR E++ ++ + L + +L L+
Sbjct: 384 IQGLGLLVYAVVGSERSDHMDKAGTMRFRNRRAEMYWRLREALDPTAEQPIALPPDQELL 443
Query: 437 QNLKSLKSFIVP--NTGELAIESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCP 491
+L +++ +V + I K R +S D D + TF E P D +
Sbjct: 444 GDLTAVRYKVVTMGQGAAIQIRDKDEIREALGRSPDKGDSVAMTFCEGIPLLDKGKRKTS 503
>gi|315122636|ref|YP_004063125.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496038|gb|ADR52637.1| putative phage terminase, large subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 301
Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 62/209 (29%), Positives = 92/209 (44%), Gaps = 8/209 (3%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M+ N E + L + S I + F + + WGE+GTPL PR+WQ E
Sbjct: 1 MNATFQPNIEYDTALLQNVLSPAIAGNPLAFTKYMYRWGEEGTPLANCKGPRAWQTEVFL 60
Query: 61 VVDAHCLNSVNNPNP----EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + +VFK AI++ RGIGKT L AW+ W +STR G +V+ ANS
Sbjct: 61 ELAEFIEKNKEAKRLGKPLQVFKLAIASARGIGKTALVAWITYWFLSTRIGCTVVISANS 120
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA----PWYSDVLHCSLGIDSKHYSTM 172
+ Q KTT +AE+ +W SL N H+FE A PW ++ + +L +
Sbjct: 121 DDQCKTTSFAEIRRWHSLAKNAHFFEANIAEALLAGGCSPWQAEPVAKTLVDINTKAEEA 180
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEAS 201
SE+ + A+
Sbjct: 181 KNNQSEKDFSRLRAELGRNLEPTFQNIAA 209
>gi|213650797|ref|ZP_03380850.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
Length = 518
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 62 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 121
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 122 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 179
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 180 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 239
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 240 DIDLSHNNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 295
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 296 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 355
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 356 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 415
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 416 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 466
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 467 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 507
>gi|171316543|ref|ZP_02905759.1| protein of unknown function DUF264 [Burkholderia ambifaria MEX-5]
gi|171098271|gb|EDT43077.1| protein of unknown function DUF264 [Burkholderia ambifaria MEX-5]
Length = 583
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/460 (13%), Positives = 118/460 (25%), Gaps = 49/460 (10%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
F+E + + E + + + R IG T A L + A+
Sbjct: 137 FLESIFDYQRTWYRAGFKERIRNILKS-RQIGATWYFAREALLDALNTGRNQIFLSASKA 195
Query: 118 TQ----------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
K + E+ +LPN + A Y L+
Sbjct: 196 QAHVFRQYIVQFAKDAVGVELKGDPMVLPNGAMLYFLGTNARTAQSYHGNLYFD------ 249
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + R + + + H+ + + +S D +
Sbjct: 250 EYFWVPRFQDLRKVASGMAIHSQWRQTYFSTPSSLAHDAYPFWSGALFNRGRPKDQRVSI 309
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+S D R + + + + +D + Q
Sbjct: 310 ----DISNAALAAGRACADGQYRQVVTVEDAVRGGCNLFDLERLKLEYSADEYANLLLCQ 365
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL- 336
F + F + ++ D + P + +G D + G VVL
Sbjct: 366 FIDDSLSVFPLATLQTCMVDTWEVWDDFKPLYLRPFGDEEVWIGYDPSHTGDSAGCVVLA 425
Query: 337 -----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
+ F W D +I L +YR I ID G +
Sbjct: 426 PPKYPGGKFRVLERFQWHGLDFEAQAAQIEALTRRYRVTYIGIDTTGIGQGVYQLVTKFF 485
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVP 448
+T L +K + + L L ++K I P
Sbjct: 486 PAATPFHYSVE---------IKTALVMKAQNVIRKGRLEFDTGWKDLAAAFMAIKKTITP 536
Query: 449 NTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
+ ++ ++ R + A D + M+ A P
Sbjct: 537 SGLQVTYKASRSEEASHGDLAWACMHALANEPLEGATSTN 576
>gi|255929035|ref|YP_003097347.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
S-RSM4]
gi|255705321|emb|CAR63310.1| DNA terminase packaging enzyme large subunit [Synechococcus phage
S-RSM4]
Length = 550
Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/441 (13%), Positives = 130/441 (29%), Gaps = 60/441 (13%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ K F +++ L F +Q E + + N P
Sbjct: 33 KCKNDPIYFAMNYIQIISLDEGLVPFKM-YDFQKEILRDFHENRFNIAKLP--------- 82
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R GK+T +L+ +++ LAN + + L +
Sbjct: 83 ---RQTGKSTTVVAYLLYYAIFYDSVNIGILANKASTARELL------------GRLQLA 127
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
++L ++ +++ T + + DE +
Sbjct: 128 YENLPKWMQHGILVWNKGNVELENGSKILAAST-------SASAVRGMSFNILFLDEFAF 180
Query: 203 TP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
P + + +T + I T N K +E + +D+ ++
Sbjct: 181 VPNHVAEQFFASVYPTITSGKSTKVIIISTPNGMNHFYKMWEDARRGKNDYVTNEVHWSQ 240
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC------ 311
V G D + E I E F D+ I ++ +P
Sbjct: 241 VPGRDAKWKEETIKNTS--PRQFAQEFECDFLGS-ADTLISPAKLQNIPFHDPIQSNAGL 297
Query: 312 -----PDPYAPLIMGCDIAEE-GGDNTVVVLRRG----PVIEHLFDWSKTDLRTTNNKIS 361
I+ D+A GGD + ++ I + ++ + I
Sbjct: 298 DVYERVQKDHEYIITVDVARGIGGDYSAFIVFDITTMPYKIVAKYRNNEIKPVLFPSVIF 357
Query: 362 GLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ ++Y ++++ N+ G LE + + G+ + + +T+L
Sbjct: 358 QVCKEYNNPYVLVEVNDIGDSIAATLNYDLEYPNVLMCAMRGRAGQIVGQGFSGNKTQLG 417
Query: 418 VKMADWLEFASLINHSGLIQN 438
VKM+ ++ N +I+
Sbjct: 418 VKMSVTVKKIGCANLKAIIEE 438
>gi|256422889|ref|YP_003123542.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
gi|256037797|gb|ACU61341.1| hypothetical protein Cpin_3879 [Chitinophaga pinensis DSM 2588]
Length = 471
Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/431 (13%), Positives = 127/431 (29%), Gaps = 60/431 (13%)
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA---EVSKWLSLLPNKHWFEMQSL 146
K+ ++ PG +L+ + + +V K + + HW
Sbjct: 62 KSWTGCVWLVMACLAYPGTRWFIGREELKRLRASTYQTFLKVCKAYGVNKDNHWDYNGQD 121
Query: 147 SLHPAPWYSDVLHCSLGI--------------DSKHYSTMCRTYSEERPDTFVGHHNTYG 192
S + L + + + DT +
Sbjct: 122 HFIQFHNGSRIDMLDLKFVPRDPYYERYGSVEYTGGWIEEGGEVNFGAYDTLKSRVGRHL 181
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ + N + W T + F + D K Q
Sbjct: 182 ------------NDKYGLLGRIFVTLNPKKNWCHTVFWK----PF--KAGQLPDKVKFLQ 223
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ IDP + + +++ R+ D ++ + + I + E
Sbjct: 224 ALVQDNPFIDPGYIDNLMSITDKVKKQ-RLLYGNFDYDDDDNALMEYDSINDIFTNEFVV 282
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD-- 370
+ + DIA G D +VV++ G + + + K ++I + KY
Sbjct: 283 E--GKKYITADIARFGSDKSVVMVWNGLRVVEIRKFEKMRTTKVADEIEKIRNKYGIPLS 340
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLE------FCRNRRTELHVKMADWL 424
+++D + G D L+ + + +D +N +++ + +A+ +
Sbjct: 341 HVVVDEDGVGGGVVDKLDG----CHGFVNNSAPIDNPQDQQQQNYKNLKSQCYYMLAERI 396
Query: 425 EFASLI---NHSG----LIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ + L + L+ +K + N +L + K + +S DYSD LM
Sbjct: 397 NDHKIFVRCDDYEMRELLSEELEQVKKWDADNDKKLEVMPKKVVKELLGRSPDYSDTLMM 456
Query: 475 TFAENPPRSDM 485
Sbjct: 457 RMFFELKPEQR 467
>gi|153213615|ref|ZP_01948888.1| terminase [Vibrio cholerae 1587]
gi|124115814|gb|EAY34634.1| terminase [Vibrio cholerae 1587]
Length = 606
Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 123/461 (26%), Gaps = 52/461 (11%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
N I R IG T + + A S +Q
Sbjct: 168 FQHTMRNNLHHRTRNILKSRQIGATYYFSGEAFEDAVLNGRDKIFLSA-SRSQA------ 220
Query: 127 EVSKWLSLLPNKHWFEMQ-----------SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
EV + + K +F+++ + + S + + Y + +
Sbjct: 221 EVFRTYIIRIAKEFFDIELTGNPITLSNGATLRFLSTNGRTAQSYSGDLYTDEYFWIGKF 280
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
++ + H + + + +S T E R I L
Sbjct: 281 NEVKKVSRAIATHKHWRLTYFSTPSSKTHPAYKFWTGEEWKEDKETRKNIEFPTFAELKD 340
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+ + ++ G D + + + +F
Sbjct: 341 G-GRVCPDKQWRY-VITMEDAVKSGFDLADIDILREENSE--RDFNNLFMCEFVDGASSI 396
Query: 296 F----IPLNIIEEALNREPCPDPYAP-----LIMGCDIAEEGGDNT------VVVLRRGP 340
F I +++ + ++ P P + +G D + + +V
Sbjct: 397 FEYNKILRCMVDIEIWQDFKPSSDRPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAAEKF 456
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
+ W + ++IS + E++ + ID GA D L
Sbjct: 457 RVLEKHTWRGLSFQHQASEISKVFERFNVTYLGIDITGIGAGVYDLLS---------NKH 507
Query: 401 KRAVDLEFCRNR-RTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIE 456
R N + L +KM D ++ L + + ++K + + +
Sbjct: 508 PRETVAIHYSNENKNRLVMKMIDIIDGNRLQFDAGMKETAMSFMAIKRVATNSGNMMTFK 567
Query: 457 SKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEG 497
+ R + D L + P D R ++Q E
Sbjct: 568 ADRSELVGHADDFWALSHALINEP--LDHSTKRKSTWQMEA 606
>gi|320199051|gb|EFW73648.1| Phage terminase, ATPase subunit [Escherichia coli EC4100B]
Length = 588
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 62/461 (13%), Positives = 121/461 (26%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P L + H +L +D
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDPIVLPDGATLYFLGTNARTAQSYHGNLYLD 251
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 252 --EYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHNNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|290474053|ref|YP_003466928.1| hypothetical protein XBJ1_0997 [Xenorhabdus bovienii SS-2004]
gi|289173361|emb|CBJ80138.1| putative phage gene [Xenorhabdus bovienii SS-2004]
Length = 594
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/462 (12%), Positives = 136/462 (29%), Gaps = 47/462 (10%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-E 117
+ H ++ + + K R IG T A+ V A+ +
Sbjct: 151 LFGYQKHLRDNKHQQVRNILK-----SRQIGATWYFAFEAFEDAVLTGKPQVFLSASKPQ 205
Query: 118 TQLKTTL---WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
Q+ + +AE ++L + + + S + Y +
Sbjct: 206 AQVFRSYIVNFAEQLFGITLSGEHIRLSNGAELRFLSTNKNTAQSYSGHLYCDEYFWIPD 265
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + H+ + + ++ T +L + R + L
Sbjct: 266 FKRFNEVASAMATHDHWRTTYFSTPSAKTHPAYSLWTGDEWRGNDPKRKNVAFPAFDELR 325
Query: 235 GKFYEIFNKPLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ P W+ ++ G + + + + +Y DS + F
Sbjct: 326 DGGRDC---PDGQWRYVITLEDAIKGGFNLASIDRLRNKYNPDS--FNMLFMCVFVDSGA 380
Query: 294 DSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVL------RR 338
F + ++ L + P+ P + G D A G +T V++
Sbjct: 381 SVFTYSQVDKCGVDINLWEDHAPNASRPFGEREVWGGFDPARSGDTSTFVIVAPPMMANE 440
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ F W + + I L ++YR I ID G + ++
Sbjct: 441 AFRVLATFYWQGMNWKHQAKLIEELFKRYRFTHIGIDTTGIGHGVYEMVQD--------- 491
Query: 399 GQKRAVDLEFCRNR-RTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGELA 454
R + + +L +KM D + L L+ + S++ G +
Sbjct: 492 FAPRQTQAIHYSQQSKNQLVMKMIDVVSEERLEWDQEQKELLASFLSIRHTTTAKGGAMT 551
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYE 496
+ R + D + + P +++ + + +Y+
Sbjct: 552 FVADRSQETGHADVFWAVSHALMNEP----LNYEKKRTSKYK 589
>gi|61806000|ref|YP_214360.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM2]
gi|61374509|gb|AAX44506.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-SSM2]
gi|265525210|gb|ACY76007.1| terminase large subunit gp17 [Prochlorococcus phage P-SSM2]
Length = 547
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 64/477 (13%), Positives = 129/477 (27%), Gaps = 71/477 (14%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
N E ++ + K F ++ L F+ +Q + +
Sbjct: 9 PNLKKANTPIEFSKDNIREFLKCKEDPVYFTRNYIKIVSLDEGLVPFNM-YDFQEKLITR 67
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+ N P R GK+T +L ++V LAN + +
Sbjct: 68 FHENRFNICKMP------------RQTGKSTTCISYLLHYAVFNDNVNVAVLANKASTAR 115
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
L + LP + S + + +
Sbjct: 116 DLL-GRLQLAYENLPRWMQQGIISWNKGSLELENGSKISA------------------NS 156
Query: 182 DTFVGHHNTYGMAIINDEASGTP----DVINLGILGFLTERN-ANRFWIMTSNPRRLSGK 236
+ I DE + P D + +T + T +
Sbjct: 157 TSSSAVRGGSYNVIFLDEFAFIPNHIADDFFASVYPTITSGQSTKVIIVSTPRGMNHFYR 216
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ K ++ + V G D + E IA ++E +F
Sbjct: 217 MWHDSEKGKSEYVATDVHWSEVPGRDEEWKEQTIANTSE--QQFKIEFECEFLGSVNTLI 274
Query: 297 IPLNI----IEEALNREPCPDPYAP------LIMGCDIAEE-GGDNTVVVLRRG----PV 341
P + E R D Y I+ D+A G D + ++
Sbjct: 275 NPAKLRNLVYEAPKTRNAGLDIYETPVKEHNYIITVDVARGLGNDYSAFIVFDTTEFPYK 334
Query: 342 IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRV 397
+ + ++ N I + + Y ++I+ N+ G + LE + +
Sbjct: 335 VVAKYRNNEIKPMLFPNIILDVAKGYNNAYLLIEVNDIGDQVASILQYDLEYENVLMASM 394
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN-------------HSGLIQNLKS 441
G+ + + ++T+L V+M ++ N +I L +
Sbjct: 395 RGRAGQIVGQGFSGKKTQLGVRMTSAVKKLGCSNLKTMMEDDKLLTCDYEIISELTT 451
>gi|16762249|ref|NP_457866.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143738|ref|NP_807080.1| terminase ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|215485952|ref|YP_002328383.1| predicted terminase, ATPase subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|312969111|ref|ZP_07783318.1| terminase, ATPase subunit [Escherichia coli 2362-75]
gi|25315563|pir||AB0927 terminase, ATPase chain [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16504553|emb|CAD09436.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29139373|gb|AAO70940.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|215264024|emb|CAS08365.1| predicted terminase, ATPase subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|312286513|gb|EFR14426.1| terminase, ATPase subunit [Escherichia coli 2362-75]
Length = 588
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHNNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|159904490|ref|YP_001548152.1| hypothetical protein MmarC6_0096 [Methanococcus maripaludis C6]
gi|159885983|gb|ABX00920.1| protein of unknown function DUF264 [Methanococcus maripaludis C6]
Length = 505
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 71/459 (15%), Positives = 131/459 (28%), Gaps = 77/459 (16%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E E +D+ + I+ GR GKT + + S G SV+ +A
Sbjct: 65 QEEIAEAIDSEMYDV----------ITINIGRRGGKTEVMGGVGPKFCSKYRGFSVLVVA 114
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
Q KT ++ ++ + L
Sbjct: 115 PVYNQAKT-MYKKIKRGLESNKESRQLVKPK-----------KEGFKESPFPLITFYNGS 162
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVI-NLGILGFLTERNANRFWIMTSNPRRL 233
T + +T + II DEA+ D I + + L + + S P
Sbjct: 163 TIEFKSAETPDNLRSEGYDLIIVDEAAFVDDEIISAVLEPMLMDSGG--ILVKISTPWGT 220
Query: 234 SGKFYEIF----------------NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
FY+ + + +K F+ + + F G G D+
Sbjct: 221 GNHFYDSYIKGELQAKMLEEGEGIPEDELRYKSFKFPSWVNPYLSKRFLMGKKKDLGEDN 280
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNI-------------IEEALNREPCPDPYAPLIMGCDI 324
V E C +F + D F ++ E + + ++G D+
Sbjct: 281 PVWLQEYCAEFIEDDTTVFSTAHVQACLSDAFETHYKTENLIYLIDEGERNKEYVIGLDL 340
Query: 325 AEEGGDNTVVVLRRG----PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
A+ +VL + + ++ D K L E + +D G
Sbjct: 341 AKHNDYTVFIVLDITTGPPYTLVYFERFNGIDYTDIAEKHLALSEAFNDAPACVDQTGIG 400
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNR-RTELHVKMADWLEFAS--LINHSGLIQ 437
D + +G + N +TE+ K++ + L+
Sbjct: 401 EAYMDIAKKVGLD---------NLTGFKFTNESKTEIITKLSTSFRNKEVVMPKIRVLLT 451
Query: 438 NLKSLKSFIVPNTGELAIESKRVKGAKSTD--YSDGLMY 474
LK+ F T +E+ + D + L
Sbjct: 452 ELKAFMRFRTKTT--FKLEA---RSGFHDDTVCAFALAM 485
>gi|312970940|ref|ZP_07785119.1| terminase, ATPase subunit [Escherichia coli 1827-70]
gi|310336701|gb|EFQ01868.1| terminase, ATPase subunit [Escherichia coli 1827-70]
Length = 588
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 59/461 (12%), Positives = 117/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
R D R + + + R D + +
Sbjct: 310 DIDLSHRNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RSTTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|170731562|ref|YP_001763509.1| hypothetical protein Bcenmc03_0207 [Burkholderia cenocepacia MC0-3]
gi|169814804|gb|ACA89387.1| protein of unknown function DUF264 [Burkholderia cenocepacia MC0-3]
Length = 583
Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/454 (12%), Positives = 115/454 (25%), Gaps = 37/454 (8%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
F+E + + E + + + R IG T A L + A+
Sbjct: 137 FLESIFDYQRTWYRAGFKERIRNILKS-RQIGATWYFAREALLDALNTGRNQIFLSASKA 195
Query: 118 TQ----LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
+A+ + + L + + + Y +
Sbjct: 196 QAHVFRQYIVQFAKDAVGVELKGDPIVLPNGATLYFLGTNARTAQSYHGNLYFDEYFWVP 255
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
R + + + H+ + + +S D + +
Sbjct: 256 RFQDLRKVASGMAIHSQWRQTYFSTPSSLAHDAYPFWSGALFNRGRPKDQRVTI----DI 311
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
S D R + + + + +D + QF +
Sbjct: 312 SNAALAAGRACADGQYRQIVTVEDAVRGGCNLFDLERLKLEYSADEYANLLLCQFIDDSL 371
Query: 294 DSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL------R 337
F + ++ D + P + +G D + G VVL
Sbjct: 372 SVFPLATLQTCMVDTWEVWDDFKPLYLRPFGDEEVWIGYDPSHTGDSAGCVVLAPPKYPG 431
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
+ F W D +I L +YR I ID G +
Sbjct: 432 GKFRVLERFQWHGLDFEAQAAQIEALTTRYRVTYIGIDTTGIGQGVYQLVTKFFPAATPF 491
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
+T L +K + + L L + ++K I P+ ++
Sbjct: 492 HYSVE---------IKTALVMKAQNVIRKGRLEFDTGWKDLAASFMAIKKTITPSGLQVT 542
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
++ R + A D + M+ A P
Sbjct: 543 YKASRSEEASHGDLAWACMHALANEPLEGATGTN 576
>gi|293417393|ref|ZP_06660017.1| terminase [Escherichia coli B185]
gi|291430913|gb|EFF03909.1| terminase [Escherichia coli B185]
Length = 590
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 EYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAADRVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRELTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTASIST 580
>gi|331656886|ref|ZP_08357848.1| terminase, ATPase subunit [Escherichia coli TA206]
gi|331055134|gb|EGI27143.1| terminase, ATPase subunit [Escherichia coli TA206]
Length = 531
Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/467 (12%), Positives = 116/467 (24%), Gaps = 46/467 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 75 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 134
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 135 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 192
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 193 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 252
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 253 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 308
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 309 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 368
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 369 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 428
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 429 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 479
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
+ E+ R + A D + M+ P + +
Sbjct: 480 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGESANASN 526
>gi|254039145|ref|ZP_04873195.1| terminase [Escherichia sp. 1_1_43]
gi|226838581|gb|EEH70610.1| terminase [Escherichia sp. 1_1_43]
Length = 590
Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALASGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|26246838|ref|NP_752878.1| terminase, ATPase subunit [Escherichia coli CFT073]
gi|26107238|gb|AAN79421.1|AE016758_25 Terminase, ATPase subunit [Escherichia coli CFT073]
Length = 588
Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHNNLAPGQLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|221065290|ref|ZP_03541395.1| protein of unknown function DUF264 [Comamonas testosteroni KF-1]
gi|220710313|gb|EED65681.1| protein of unknown function DUF264 [Comamonas testosteroni KF-1]
Length = 632
Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats.
Identities = 50/464 (10%), Positives = 114/464 (24%), Gaps = 39/464 (8%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + N E + + + R IG T A L + A+
Sbjct: 184 EIFHAGNFGYQNRWYEAQKERTRILLKS-RQIGATYYFAREALIRAVLEGRNQIFLSASK 242
Query: 117 E--TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL-HPAPWYSDVLHCSLGIDSKHYSTMC 173
Q K + A ++ L L S +
Sbjct: 243 AQAHQFKNYMVAFANEVGVDLGGDPMVLWNGAELHFLGTNAKTAQGRSGDFYFDEFFWTG 302
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGI-LGFLTERNANRFWIMTSNPRR 232
+ + + H + + ++ + + + R+ + + + +
Sbjct: 303 NFKELNKVASAMATHKHWRKTYFSTPSAKSHEAYSFWTGEDRNRGRDKAKHVQIDLSHKA 362
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
L+ + + + + + D +F
Sbjct: 363 LANGLRCADGRFR-----HIVTIDDALRLGCNLFDLAELLEEYPDDEFSNLFRCEFIDDS 417
Query: 293 IDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL----- 336
F + ++ P+ +G D + G +VV+
Sbjct: 418 NSQFTLQMMQACMVDSWEAWADDFKPLAARPFAWQPVWVGYDPSFTGDTAALVVIAPPKV 477
Query: 337 -RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+ H + D I + E+Y + ID G +
Sbjct: 478 PGGKFRLLHRQQFRGADFEAQAEYIRSITERYNVTFMGIDTTGLGQGVYQNV-------- 529
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGE 452
+ +A + + L +K + L + + ++K + P+
Sbjct: 530 -IKFYPQAQSYHYDLALKARLVLKAKQVISKGRLEMDADCTDVAAAFMAIKKVLTPSQRH 588
Query: 453 LAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYE 496
+ +S R D + +M+ D+ G YE
Sbjct: 589 VTYQSGRSDDIGHADLAWAVMHALDNESLAGDVHGGSSSVEVYE 632
>gi|253774139|ref|YP_003036970.1| hypothetical protein ECBD_2764 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160943|ref|YP_003044051.1| Terminase, ATPase subunit [Escherichia coli B str. REL606]
gi|242376647|emb|CAQ31358.1| ybl37 [Escherichia coli BL21(DE3)]
gi|253325183|gb|ACT29785.1| protein of unknown function DUF264 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972844|gb|ACT38515.1| Terminase, ATPase subunit [Escherichia coli B str. REL606]
gi|253977058|gb|ACT42728.1| Terminase, ATPase subunit [Escherichia coli BL21(DE3)]
Length = 588
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDPI--VLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLC----TDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEIWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|213646682|ref|ZP_03376735.1| Phage protein P [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
Length = 590
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAAGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|221214652|ref|ZP_03587622.1| putative ATPase subunit of terminase (gpP-like) [Burkholderia
multivorans CGD1]
gi|221165542|gb|EED98018.1| putative ATPase subunit of terminase (gpP-like) [Burkholderia
multivorans CGD1]
Length = 583
Score = 121 bits (302), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/460 (12%), Positives = 117/460 (25%), Gaps = 49/460 (10%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
F+E + + E + + + R IG T A L + A+
Sbjct: 137 FLESIFDYQRTWYRAGFKERIRNILKS-RQIGATWYFAREALLDALNTGRNQIFLSASKA 195
Query: 118 TQ----------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
K T+ E+ +LPN + +
Sbjct: 196 QAHVFRQYIVQFAKDTVGVELKGDPIVLPNG------ATLYFLGTNARTAQSYHGNLYFD 249
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + R + + + H+ + + +S D +
Sbjct: 250 EYFWVPRFQDLRKVASGMAIHSQWRQTYFSTPSSLAHDAYPFWSGALFNRGRPKDQRVSV 309
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+S D R + + + + +D + Q
Sbjct: 310 ----DISNASLAAGRACGDGQWRQIVTVEDAVRGGCNLFDLERLKLEYSADEYANLLLCQ 365
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL- 336
F + F + ++ D + P + +G D + G VV+
Sbjct: 366 FIDDSLSVFPLSALQPCMVDTWEVWDDFKPLYLRPFGDEDVWIGYDPSHTGDSAGCVVVA 425
Query: 337 -----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
+ F W D +I L +YR I ID G +
Sbjct: 426 PPKYPGGKFRVLERFQWHGLDFEAQAGQIEALTRRYRVTYIGIDTTGIGQGVYQLVTKFF 485
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVP 448
+T L +K + + S L + ++K + P
Sbjct: 486 PAATPFHYSVE---------IKTALVMKAQNVIRKGRFEFDSGWKDLAASFMAIKKTLTP 536
Query: 449 NTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
+ ++ ++ R + A D + M+ A P
Sbjct: 537 SGLQVTYKASRSEEASHGDLAWACMHALANEPLEGATGTN 576
>gi|218558996|ref|YP_002391909.1| Terminase, ATPase subunit (GpP) [Escherichia coli S88]
gi|218365765|emb|CAR03503.1| Terminase, ATPase subunit (GpP) [Escherichia coli S88]
Length = 600
Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 157 EYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 211
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 212 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 269
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 270 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 329
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 330 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 386
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 387 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 446
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 447 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 497
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 498 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 557
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 558 YEASRSEEASHADLAWATMHALLNEPLTAGIST 590
>gi|320172719|gb|EFW47954.1| Phage terminase, ATPase subunit [Shigella dysenteriae CDC 74-1112]
Length = 590
Score = 121 bits (302), Expect = 4e-25, Method: Composition-based stats.
Identities = 56/454 (12%), Positives = 117/454 (25%), Gaps = 47/454 (10%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGEL- 453
A D+ + +T + +K D + L + + + +++ + ++G +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRK-TMTSSGRIA 546
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 547 TYEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|194450112|ref|YP_002047236.1| hypothetical protein SeHA_C3493 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194408416|gb|ACF68635.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
Length = 591
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 55/460 (11%), Positives = 125/460 (27%), Gaps = 57/460 (12%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H ++ + K R IG T A+ +
Sbjct: 140 DTWAEEHLFEYQKHLRRNIGQLVRNILK-----SRQIGATWYFAFEAFENAVMTGDPQIF 194
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHC 160
A+ AEV + + + +F + + +
Sbjct: 195 LSASKAQ-------AEVFRSYIVNIAEQYFGITLTGNPIRLSNGAELRFLSTNKNTAQSY 247
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
S + Y + + + H+ + + ++ T + +
Sbjct: 248 SGHLYCDEYFWVPNFTKLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGDEWKQGSK 307
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
R I L + + ++ G + + E + RY ++
Sbjct: 308 KRTAIKFPTFDELRDG-GRVCPDGQWRY-VITMEDAIAGGFNLANIEKLRNRY--NTATF 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEA---LNREPCPDPY-------APLIMGCDIAEEGGD 330
+ F F + +E ++ +P P+ G D A G
Sbjct: 364 NMLYMCVFVDSKDSVF-SFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDL 422
Query: 331 NTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+ V++ + + W + R +I L +KY + +D G
Sbjct: 423 SCFVIVAPPMFAVEKFRVLKVIYWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGVF 482
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSGLIQ---NLK 440
D ++ R N + +L +K AD +E + L + +
Sbjct: 483 DNIQ---------HFAMRVAVAIRYDLNTKNKLVLKAADVVESQRIEWDKNLKEIPASFM 533
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
S++ + + + R + + + + P
Sbjct: 534 SVRRTTTQSGNAMTFVADRSQDTGHAEAFWAITHALHNEP 573
>gi|41179386|ref|NP_958694.1| Bbp25 [Bordetella phage BPP-1]
gi|45569518|ref|NP_996587.1| hypothetical protein BMP-1p24 [Bordetella phage BMP-1]
gi|45580769|ref|NP_996635.1| hypothetical protein BIP-1p24 [Bordetella phage BIP-1]
gi|40950125|gb|AAR97691.1| Bbp25 [Bordetella phage BPP-1]
Length = 533
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 49/241 (20%), Positives = 84/241 (34%), Gaps = 20/241 (8%)
Query: 274 GLDSDVTRVEVCGQFPQQDID---SFIPLNIIEEALNREPCPDPYAPLI-MGCDIAEEGG 329
L + + G F D IP +E A R PD AP+ +G D+A G
Sbjct: 288 SLPEPLRSQMLYGDFNAGIEDDPWQVIPTAWVEAAQARWKRPDRLAPMDSLGVDVARGGR 347
Query: 330 DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII-IDANNTGARTCDYLE 388
DNT++ R + + D + R A+I +D GA D+L
Sbjct: 348 DNTILARRHAMWFDVPLTYPGKDTPDGPTVAGLAIAALRDHAVIHLDVIGVGASPYDFLA 407
Query: 389 MLGYHVYRVLGQKRA-----VDLEFCRNRRTELHVKMADWLE-----FASLINHSGLIQN 438
V V + A N R+EL +M + L+ +L L+ +
Sbjct: 408 QAKQQVVGVNVAEAARGTDKSGRLRFFNLRSELWWRMREALDPTNNTGIALPPDPRLLAD 467
Query: 439 LKSLKSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
L + + L + S+ K +S D+ + + P R+ ++ +
Sbjct: 468 LTAP--TWSLSGATLKVASREDIIEKIGRSPDFGSAYVLALMDTPKRAAVEALGQARSRL 525
Query: 496 E 496
+
Sbjct: 526 D 526
>gi|238764966|ref|ZP_04625904.1| terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
gi|238696825|gb|EEP89604.1| terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
Length = 591
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 49/446 (10%), Positives = 121/446 (27%), Gaps = 43/446 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-E 117
+ H N+ + K R IG T A+ + A+ +
Sbjct: 149 LFSYQQHLRNNKFRRVRNLLK-----SRQIGATYYFAFEAFEDAVLSGDTQIFLSASKRQ 203
Query: 118 TQLKTTLWAEVSKWLSLLPNKH---WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
++ T ++++ +P K + A + S + Y +
Sbjct: 204 AEVFRTYIVKIAQTEFGIPIKGNPIKLSNLAELYFLATNSNTAQSNSGHLYIDEYLWIPN 263
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + H + + + ++ T + + R ++ + +
Sbjct: 264 FRRLNEVASGMATHKHWRITYFSTPSAKTHQGYPFWSGDEWRKGDTKRKDVVFPSFDEMR 323
Query: 235 GKFYEIFNKPLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
E P W+ ++ G + + + RY + F
Sbjct: 324 DGGREC---PDGQWRYVVTLEDAIAGGFNLADINELRERYNE--SAFNMLFMCVFVDDKE 378
Query: 294 DSFIPLNIIEEALN--REPCPDPYAPL-------IMGCDIAEEGGDNTVVVLR------R 338
F +++ ++ P P+ G D A + T VV+
Sbjct: 379 SVFKFGDLMRCGVDIRTWEDFHPDEPMPFGNREVWGGFDPARSNDNATFVVVAPPLVAAE 438
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ W + +I + +Y I ID G + ++
Sbjct: 439 RFRVLEKHHWRSMSFQFMAERIRSIKARYNMTYIGIDVTGLGYGVFELVQG--------- 489
Query: 399 GQKRAVDLEFCR-NRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGELA 454
R + L +KM D + + + + +++ + ++
Sbjct: 490 FAHRETVAIHYSVESKNRLVMKMLDVIYANRIEWDEEATDIPASFLAIRQETTNSGNKVT 549
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENP 480
++R + D + + + P
Sbjct: 550 FTAERSEETGHADVFFAIAHALSNEP 575
>gi|307314499|ref|ZP_07594102.1| protein of unknown function DUF264 [Escherichia coli W]
gi|306905922|gb|EFN36444.1| protein of unknown function DUF264 [Escherichia coli W]
gi|315060102|gb|ADT74429.1| terminase, ATPase subunit [Escherichia coli W]
gi|323379340|gb|ADX51608.1| terminase ATPase subunit [Escherichia coli KO11]
gi|332342200|gb|AEE55534.1| phage terminase, ATPase subunit [Escherichia coli UMNK88]
Length = 588
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNRADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|56414723|ref|YP_151798.1| phage gene [Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197363650|ref|YP_002143287.1| phage gene [Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
gi|56128980|gb|AAV78486.1| putative phage gene [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197095127|emb|CAR60674.1| putative phage gene [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 591
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 52/455 (11%), Positives = 121/455 (26%), Gaps = 47/455 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H ++ + K R IG T A+ +
Sbjct: 140 DTWAEEHLFEYQKHLRRNIGQLVRNILK-----SRQIGATWYFAFEAFENAVMTGDPQIF 194
Query: 112 CLANSETQ------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ + L+ P + + + + S +
Sbjct: 195 LSASKVQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELR--FLSTNKNTAQSYSGHLY 252
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + H+ + + ++ T + + R I
Sbjct: 253 CDEYFWVPNFTKLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGDEWKQGSKKRTAI 312
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
L + + ++ G + + E + RY ++ +
Sbjct: 313 KFPTFDELRDG-GRVCPDGQWRY-VITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYM 368
Query: 286 GQFPQQDIDSFIPLNIIEEA---LNREPCPDPY-------APLIMGCDIAEEGGDNTVVV 335
F F + +E ++ +P P+ G D A G + V+
Sbjct: 369 CVFVDNKDSVF-SFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVI 427
Query: 336 L------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + + W + R +I L +KY + +D G D ++
Sbjct: 428 VAPPMFAVEKFRVLKVIYWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGVFDNIQ- 486
Query: 390 LGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSF 445
R N + +L +K A +E + L + + S++
Sbjct: 487 --------HFAMRVAVAIRYDLNTKNQLVLKAAGVVESQRIEWDKNLKEIPASFMSVRRT 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + R + + + + P
Sbjct: 539 TTQSGNAMTFVADRSQDTGHAEAFWAITHALHNEP 573
>gi|313760829|gb|ADR79391.1| terminase [APSE phage Eptesicus fuscus/P5/IT/USA/2009]
Length = 394
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 65/376 (17%), Positives = 106/376 (28%), Gaps = 71/376 (18%)
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
+ + + + H +EA + ++ + + +
Sbjct: 14 IEGINDSIFKYGQLAR--NIASIKSKH--DFDVAWVEEAETVSEKSLDTLIPTIRKPGSE 69
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
++ NP G Y F KP Q E + LD+
Sbjct: 70 LWFSF--NPAEEDGAVYRRFVKPYKAIIDKQGYYEDDEVY-------VGKVSYLDNPWLP 120
Query: 282 VEVC-----GQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIMGCDIAEEGGDNTVV 334
E+ G+ D+ I +E A + P ++ D A+ G D +
Sbjct: 121 AELKNDAQKGECDANYEDALIQPEWVEAATDAHIKLGFKPSGIRVVTFDPADSGQDEKAL 180
Query: 335 VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC---------- 384
R G +IE WS+ D+ YR D I D GA T
Sbjct: 181 SKRYGVLIEDCVSWSEGDVADATMTAFDEAFDYRADDFIYDNIGLGAGTVKTHLRHSNDG 240
Query: 385 --------------DYLEML----GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL-- 424
DY + + RN+R + V +AD
Sbjct: 241 NKMVVTGFGAGDSPDYPHEIYVPGNGEYLPSSNNDDRTHRDTFRNKRAQYWVYLADRFYK 300
Query: 425 -----EFASLINHSGLIQ-------------NLKSLKSFIVPNTGELAIESK---RVKGA 463
E ++ LI L + P + + SK R+KG
Sbjct: 301 TWRAVEKGEYLDPEALISLSSKIAKLSQLKSELIKQQRKRTPGNRLIQLMSKDEMRLKGI 360
Query: 464 KSTDYSDGLMYTFAEN 479
KS + +D LM +FA
Sbjct: 361 KSPNMADTLMMSFANP 376
>gi|331675382|ref|ZP_08376132.1| terminase, ATPase subunit (GpP) [Escherichia coli TA280]
gi|331067442|gb|EGI38847.1| terminase, ATPase subunit (GpP) [Escherichia coli TA280]
Length = 590
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSTDD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|323936689|gb|EGB32974.1| terminase [Escherichia coli E1520]
Length = 590
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 EYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFATNPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|117623093|ref|YP_852006.1| putative phage terminase [Escherichia coli APEC O1]
gi|117624286|ref|YP_853199.1| Phage protein P [Escherichia coli APEC O1]
gi|115512217|gb|ABJ00292.1| putative phage terminase [Escherichia coli APEC O1]
gi|115513410|gb|ABJ01485.1| Phage protein P [Escherichia coli APEC O1]
Length = 590
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|30065706|ref|NP_839851.1| gpP [Yersinia phage L-413C]
gi|300947250|ref|ZP_07161455.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|301022960|ref|ZP_07186775.1| conserved hypothetical protein [Escherichia coli MS 69-1]
gi|331678021|ref|ZP_08378696.1| terminase, ATPase subunit (GpP) [Escherichia coli H591]
gi|30025900|gb|AAP04439.1| gpP [Yersinia phage L-413C]
gi|33413700|gb|AAN28220.1| gpP [Enterobacteria phage WPhi]
gi|300397301|gb|EFJ80839.1| conserved hypothetical protein [Escherichia coli MS 69-1]
gi|300453115|gb|EFK16735.1| conserved hypothetical protein [Escherichia coli MS 116-1]
gi|315061386|gb|ADT75713.1| terminase, ATPase subunit [Escherichia coli W]
gi|315063221|gb|ADT77548.1| phage large terminase subunit [Escherichia coli W]
gi|323380714|gb|ADX52982.1| phage large terminase subunit GpP [Escherichia coli KO11]
gi|325499372|gb|EGC97231.1| Terminase, ATPase subunit (GpP) [Escherichia fergusonii ECD227]
gi|331074481|gb|EGI45801.1| terminase, ATPase subunit (GpP) [Escherichia coli H591]
Length = 590
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 EYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|319789040|ref|YP_004150673.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1]
gi|317113542|gb|ADU96032.1| protein of unknown function DUF264 [Thermovibrio ammonificans HB-1]
Length = 419
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 74/444 (16%), Positives = 144/444 (32%), Gaps = 72/444 (16%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+Q+E ++ +D+H + I R GK+ + ++ +T+P +++
Sbjct: 6 PYQIEIVKGIDSHKFSV------------IKMARQTGKSFVVSYWATRRATTKPNHAIVV 53
Query: 113 LANSETQLKTTLWAEVSKWLSL---LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
++ +E Q K L+ + K L +FE L + + +L
Sbjct: 54 VSPTERQSK--LFVDKVKLHIKAMRLTGVKFFEDTELKKLEVNFPNGSQIIAL------- 104
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMT 227
P G G +I DE + + + + +T R + +
Sbjct: 105 -----------PANPDGIRGFSGD-VIMDEVAFFKNWQEVYRAVFPIIT-RKKDYKLVAI 151
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
S P + FY +++ ++ K F+ V E + A + D R E
Sbjct: 152 STPFGKNDLFYYLWSISENNPKWFRYSLNIFEAVAKGLKVDVEELRAGI-KNEDAWRTEY 210
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCP------DPYAPLIMGCDIAEEGGDNTVVV--- 335
+F + P +I++ + + L G D+ D TV+
Sbjct: 211 LVEFIDEADAVL-PYELIQKCEMPKEELLVEDIKELKGELYCGVDVGR-RKDLTVITLLE 268
Query: 336 -LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYH 393
L + + + SK R IS + + ID G + + L+ G
Sbjct: 269 KLGDVLYVRRIEELSKKPFREQLELISHYA--HYARRLAIDETGLGMQLAEELKERFGSK 326
Query: 394 VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF--ASLINHSGLIQNLKSLKSFIVPNTG 451
V V + + EL K+ + + L ++L S++ V N G
Sbjct: 327 VIPVYFSAKN---------KEELAEKLRAKFQDRLIRVPADPDLREDLHSVRK-TVTNAG 376
Query: 452 ELAIESKRVKGAKSTDYSDGLMYT 475
+ E + D L
Sbjct: 377 NVRYEGSTQE--SHADRFWSLALA 398
>gi|323938219|gb|EGB34479.1| terminase [Escherichia coli E1520]
Length = 588
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 58/467 (12%), Positives = 116/467 (24%), Gaps = 46/467 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGESANASN 583
>gi|324113792|gb|EGC07767.1| terminase [Escherichia fergusonii B253]
Length = 590
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFATNPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|323961666|gb|EGB57270.1| terminase [Escherichia coli H489]
Length = 590
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|315296184|gb|EFU55492.1| conserved hypothetical protein [Escherichia coli MS 16-3]
Length = 590
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 EYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDISHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|294494147|gb|ADE92903.1| terminase, ATPase subunit [Escherichia coli IHE3034]
gi|323951869|gb|EGB47743.1| terminase [Escherichia coli H252]
Length = 590
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|320196848|gb|EFW71470.1| Phage terminase, ATPase subunit [Escherichia coli WV_060327]
Length = 590
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELYNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|82543312|ref|YP_407259.1| terminase, ATPase subunit [Shigella boydii Sb227]
gi|81244723|gb|ABB65431.1| terminase, ATPase subunit [Shigella boydii Sb227]
gi|320185726|gb|EFW60482.1| Phage terminase, ATPase subunit [Shigella flexneri CDC 796-83]
gi|332097052|gb|EGJ02035.1| terminase, ATPase subunit [Shigella boydii 3594-74]
Length = 588
Score = 120 bits (301), Expect = 5e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEKIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGRLCA----DGQYRQIVTVEDAVRGACNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|323378035|gb|ADX50303.1| phage large terminase subunit GpP [Escherichia coli KO11]
Length = 589
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 146 EYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 200
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 201 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 258
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 259 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 318
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 319 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 375
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 376 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 435
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 436 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 486
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 487 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 546
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 547 YEASRSEEASHADLAWATMHALLNEPLTAGIST 579
>gi|9630329|ref|NP_046758.1| gpP [Enterobacteria phage P2]
gi|168789033|ref|ZP_02814040.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC869]
gi|188492656|ref|ZP_02999926.1| phage large terminase subunit GpP [Escherichia coli 53638]
gi|261225041|ref|ZP_05939322.1| Terminase, ATPase subunit (GpP) [Escherichia coli O157:H7 str.
FRIK2000]
gi|261257612|ref|ZP_05950145.1| Terminase, ATPase subunit (GpP) [Escherichia coli O157:H7 str.
FRIK966]
gi|301048706|ref|ZP_07195715.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|139354|sp|P25479|VPP_BPP2 RecName: Full=Terminase, ATPase subunit; AltName: Full=GpP
gi|3139088|gb|AAD03269.1| gpP [Enterobacteria phage P2]
gi|188487855|gb|EDU62958.1| phage large terminase subunit GpP [Escherichia coli 53638]
gi|189371250|gb|EDU89666.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC869]
gi|300299452|gb|EFJ55837.1| conserved hypothetical protein [Escherichia coli MS 185-1]
gi|324020535|gb|EGB89754.1| hypothetical protein HMPREF9542_00768 [Escherichia coli MS 117-3]
Length = 590
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|309795387|ref|ZP_07689805.1| conserved hypothetical protein [Escherichia coli MS 145-7]
gi|308121037|gb|EFO58299.1| conserved hypothetical protein [Escherichia coli MS 145-7]
Length = 588
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|170683976|ref|YP_001746268.1| phage large terminase subunit GpP [Escherichia coli SMS-3-5]
gi|170521694|gb|ACB19872.1| phage large terminase subunit GpP [Escherichia coli SMS-3-5]
Length = 590
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|170020778|ref|YP_001725732.1| hypothetical protein EcolC_2777 [Escherichia coli ATCC 8739]
gi|169755706|gb|ACA78405.1| protein of unknown function DUF264 [Escherichia coli ATCC 8739]
Length = 588
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|198245759|ref|YP_002216726.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|197940275|gb|ACH77608.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|326624483|gb|EGE30828.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 588
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|306812733|ref|ZP_07446926.1| Terminase, ATPase subunit (GpP) [Escherichia coli NC101]
gi|305853496|gb|EFM53935.1| Terminase, ATPase subunit (GpP) [Escherichia coli NC101]
Length = 588
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFNSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|300907199|ref|ZP_07124862.1| hypothetical protein HMPREF9536_05153 [Escherichia coli MS 84-1]
gi|301303626|ref|ZP_07209748.1| hypothetical protein HMPREF9347_02221 [Escherichia coli MS 124-1]
gi|300401074|gb|EFJ84612.1| hypothetical protein HMPREF9536_05153 [Escherichia coli MS 84-1]
gi|300841125|gb|EFK68885.1| hypothetical protein HMPREF9347_02221 [Escherichia coli MS 124-1]
gi|315257856|gb|EFU37824.1| conserved hypothetical protein [Escherichia coli MS 85-1]
Length = 588
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWSDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|332884414|gb|EGK04674.1| hypothetical protein HMPREF9456_03377 [Dysgonomonas mossii DSM
22836]
Length = 450
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 65/410 (15%), Positives = 123/410 (30%), Gaps = 35/410 (8%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G GK+ L ++ + P + LK T + K S+ +
Sbjct: 29 GGGKSILESYWLTKNSLKYPDTKWLLGRAKMKTLKETTLKSLFKVFSMQ------GITPN 82
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
++ + + + F + DE S +
Sbjct: 83 YYKYNGANDKENPNTIQFYNGSLIILKDLFYYPSDPEFDELGSLEITGAAIDENSQITEK 142
Query: 207 INLGILGFLTERNANRFWI--MTSNPRRLSGKFYEIFNKPL------DDWKRFQIDTRTV 258
++ + A I M Y F KP DD Q
Sbjct: 143 CWNIVMSRIRHDVAKNGLIPKMFGACNPTKNFVYNRFYKPHRDGILPDDKAFIQALVTDN 202
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI--PLNIIEEALNREPCPDPYA 316
+D + E + LD + G++ D + I++ N
Sbjct: 203 PFVDKFYIENLKN---LDPISRARLLDGEWEYDDDPYVLMQYEKIVDLFTNSHVS---GG 256
Query: 317 PLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIII 374
P M D+A G D+T + + G + + K + L +Y I
Sbjct: 257 PRYMTIDVARLGKDDTTIRIWEGLISIYKKVIPKCRIDDLTVLARKLQTEYSVPNSNTIA 316
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI---- 430
D + G D L G+ V ++ +N R++ + K+A+ + +
Sbjct: 317 DEDGVGGGLVDNLRCKGF-VNNSKPLPIYGEVRNYQNLRSQCYFKLAEIVNSNLMYLKNE 375
Query: 431 ---NHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ +++ L+ +K +L + +K + KSTD +D LM
Sbjct: 376 PIVDRERVVKELEQIKQIDADKDTKLKVITKEMLKSILGKSTDEADNLMM 425
>gi|324112701|gb|EGC06677.1| terminase [Escherichia fergusonii B253]
Length = 588
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|218690765|ref|YP_002398977.1| terminase, ATPase subunit (GpP) [Escherichia coli ED1a]
gi|218428329|emb|CAR09255.2| Terminase, ATPase subunit (GpP) [Escherichia coli ED1a]
Length = 588
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|157160343|ref|YP_001457661.1| terminase, ATPase subunit [Escherichia coli HS]
gi|218559567|ref|YP_002392480.1| Terminase, ATPase subunit (GpP) [Escherichia coli S88]
gi|256021061|ref|ZP_05434926.1| Terminase, ATPase subunit (GpP) [Shigella sp. D9]
gi|300817075|ref|ZP_07097294.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|331662228|ref|ZP_08363151.1| terminase, ATPase subunit [Escherichia coli TA143]
gi|331676606|ref|ZP_08377302.1| terminase, ATPase subunit [Escherichia coli H591]
gi|332282288|ref|ZP_08394701.1| DNA-dependent ATPase terminase subunit [Shigella sp. D9]
gi|157066023|gb|ABV05278.1| terminase, ATPase subunit [Escherichia coli HS]
gi|218366336|emb|CAR04087.1| Terminase, ATPase subunit (GpP) [Escherichia coli S88]
gi|300530427|gb|EFK51489.1| conserved hypothetical protein [Escherichia coli MS 107-1]
gi|315615257|gb|EFU95893.1| terminase, ATPase subunit [Escherichia coli 3431]
gi|323172219|gb|EFZ57857.1| terminase, ATPase subunit [Escherichia coli LT-68]
gi|323190830|gb|EFZ76098.1| terminase, ATPase subunit [Escherichia coli RN587/1]
gi|323942735|gb|EGB38900.1| terminase [Escherichia coli E482]
gi|323946304|gb|EGB42336.1| terminase [Escherichia coli H120]
gi|323963883|gb|EGB59377.1| terminase [Escherichia coli M863]
gi|327252355|gb|EGE64027.1| terminase, ATPase subunit [Escherichia coli STEC_7v]
gi|331060650|gb|EGI32614.1| terminase, ATPase subunit [Escherichia coli TA143]
gi|331075295|gb|EGI46593.1| terminase, ATPase subunit [Escherichia coli H591]
gi|332104640|gb|EGJ07986.1| DNA-dependent ATPase terminase subunit [Shigella sp. D9]
Length = 588
Score = 120 bits (300), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|222034345|emb|CAP77086.1| Terminase, ATPase subunit [Escherichia coli LF82]
Length = 588
Score = 120 bits (300), Expect = 7e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVDVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|282599774|ref|ZP_05971828.2| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
gi|282567779|gb|EFB73314.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
Length = 594
Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 58/472 (12%), Positives = 132/472 (27%), Gaps = 50/472 (10%)
Query: 52 RSWQL---EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
+Q E + H ++ + K R IG T A+
Sbjct: 144 DDFQKFADEMLFGYQKHLRANITKSVRNILK-----SRQIGATWYFAFEAFEDACLTGKP 198
Query: 109 SVICLA--NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGI 164
+ A ++ + K+ + + + + + + + S +
Sbjct: 199 QLFLSASKPQAEVFRSYIVNIAEKFFGVTLTGNPIRLSNGAELRFLSTNKNTAQSYSGHL 258
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
Y + + + H+ + + ++ T + R
Sbjct: 259 YCDEYFWVPDFKRFNEVSSAMATHDHWRTTYFSTPSAKTHPAYPFWTGDEWRGSDPARKK 318
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
+ L + P W+ ++ G + + E + +Y DS +
Sbjct: 319 VKFPQFDELRDGGRDC---PDGQWRYVITLEDAIKGGFNLASIERLRNKYNPDS--FNML 373
Query: 284 VCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPL-------IMGCDIAEEGGDNTVV 334
F F + + ++ +P AP G D A G +T
Sbjct: 374 FMCVFVDSGASVFKYHQLDKCGVDVHLWEDHNPDAPRPFGDREVWGGFDPARSGDTSTFA 433
Query: 335 VLR------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
++ + +F W + + I L ++YR I ID G + ++
Sbjct: 434 IVAPPMMAPEVFRVLAIFYWQGMNWKHQAKLIEDLTKRYRFTYIGIDTTGIGHGVYEMVQ 493
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNR-RTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
R + + +L +KM D + L ++ + S++
Sbjct: 494 D---------FAPRQTHSIHYSQQTKNQLVMKMIDVVSEERLEWDEEQKEILASFLSIRH 544
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYE 496
G + + R + D + + P ++F R + +Y
Sbjct: 545 TTTGKGGSMTFVADRTQETGHADAFWAIAHAVMNEP----LNFERKRTSKYR 592
>gi|300916285|ref|ZP_07133032.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300416374|gb|EFJ99684.1| conserved hypothetical protein [Escherichia coli MS 115-1]
Length = 588
Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 117/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T + +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRSKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|332088966|gb|EGI94078.1| terminase, ATPase subunit [Shigella boydii 5216-82]
Length = 590
Score = 120 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTTQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|320180747|gb|EFW55673.1| Phage terminase, ATPase subunit [Shigella boydii ATCC 9905]
gi|323167352|gb|EFZ53060.1| terminase, ATPase subunit [Shigella sonnei 53G]
Length = 590
Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 115/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F +
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKV 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|254286518|ref|ZP_04961475.1| terminase [Vibrio cholerae AM-19226]
gi|150423467|gb|EDN15411.1| terminase [Vibrio cholerae AM-19226]
Length = 605
Score = 120 bits (299), Expect = 9e-25, Method: Composition-based stats.
Identities = 59/455 (12%), Positives = 119/455 (26%), Gaps = 40/455 (8%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN-SETQLKTTLW 125
N I R IG T A L + A+ +++++
Sbjct: 167 YQHTMRNNLHQRTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQSEVFRRYI 226
Query: 126 AEVSKW---LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
++K L L N + + + Y + + +
Sbjct: 227 VALAKEFLGLELSGNPMTLSNGAELHFLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVA 286
Query: 183 TFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
+ + + + +S R I L
Sbjct: 287 SGMASQKKWRKTYFSTPSSKIHPAYPFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLC-- 344
Query: 243 KPLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----I 297
P W+ I+ G D + + Y F F I
Sbjct: 345 -PDKQWRYVVTIEDAAKGGCDLFDIDELREEYSETD--FNNLFMCVFVDGASSIFEFNKI 401
Query: 298 PLNIIEEALNREPCPDPYAP-----LIMGCDIAEEGGDNT------VVVLRRGPVIEHLF 346
+++ + ++ P+ P + +G D + + +V +
Sbjct: 402 ERCMVDSEIWQDYKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKH 461
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
W + ++IS + E++ + ID GA D L V R
Sbjct: 462 TWRGLSFQHQASEISKVFERFNVTYLGIDITGIGAGVHDLL---------VNKHPRETVA 512
Query: 407 EFCRNR-RTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKG 462
N + L +KM D ++ L + ++K + + +++R +
Sbjct: 513 IHYSNENKNRLVMKMIDIIDGNRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQ 572
Query: 463 AKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEG 497
A D L + P D R ++Q
Sbjct: 573 AGHADDFWALSHALINEP--LDHSTQRKSTWQMAA 605
>gi|331646084|ref|ZP_08347187.1| terminase, ATPase subunit [Escherichia coli M605]
gi|331044836|gb|EGI16963.1| terminase, ATPase subunit [Escherichia coli M605]
Length = 588
Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDFASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|296104758|ref|YP_003614904.1| terminase, ATPase subunit [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295059217|gb|ADF63955.1| terminase, ATPase subunit [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 572
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/453 (11%), Positives = 114/453 (25%), Gaps = 42/453 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-E 117
M H + R IG T A L T + A+ +
Sbjct: 128 MFEYQRHWWQAGVKHRIRNL----LKSRQIGATYFFAREALIDAITTGRNQIFLSASKAQ 183
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ + +K + + + + + + Y + +
Sbjct: 184 AHVFKQYIIDFAKEVDVELKGDPMTLSNGACLYFLGTNARTAQSYHGNLYLDEYFWIPKF 243
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+ + + H + + +S T A +
Sbjct: 244 QELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDIDLTHGN-- 301
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
D R + + + R D + + +F
Sbjct: 302 --LARGVLCPDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCEFIDDLASV 359
Query: 296 FIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTVVVL------- 336
F + ++ + + +G D A+ + GD+ V+
Sbjct: 360 FPLSELQACMVDSWEVWADFQALALRPFGWREVWIGYDPAKGTQNGDSAGCVVVAPPAVP 419
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
I W D R + I L ++Y I ID+ G + ++ V
Sbjct: 420 GGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYENVKAFFPAVRE 479
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
+ N + L +K D + L + + Q+ +++ +
Sbjct: 480 FVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRP 530
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
E+ R + A D + M+ P + +
Sbjct: 531 TYEASRSEEASHADLAWATMHALFNEPLQGEAA 563
>gi|324009700|gb|EGB78919.1| hypothetical protein HMPREF9532_00529 [Escherichia coli MS 57-2]
Length = 588
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKVDKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHINLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRIEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|261251508|ref|ZP_05944082.1| terminase [Vibrio orientalis CIP 102891]
gi|260938381|gb|EEX94369.1| terminase [Vibrio orientalis CIP 102891]
Length = 594
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/424 (11%), Positives = 108/424 (25%), Gaps = 40/424 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I R IG T + L + A S Q + + +
Sbjct: 169 ILKSRQIGATYYFSGEALENAILTGDDQLFLSA-SRAQA-EVFRTYIIRIAKEFWDIDLT 226
Query: 142 EMQ------SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+ + S + + Y + + ++ + + H +
Sbjct: 227 GNPIVLSNGAHLRFLSTNGKTAQSYSGHLYTDEYFWIGQFAEVKKVSSAIATHKKWRRTY 286
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
+ +S T + R I + ++
Sbjct: 287 FSTPSSKTHPAYPFWTGDEWRQGKETRKNIEFPTFD--EYRDGGRLCPDKQWRYVITMED 344
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----IPLNIIEEALNREPC 311
+G D E + Y + + F F + +++ ++
Sbjct: 345 AVAQGFDLVDIEDLRDEYSDNE--FKNLFMCIFVDGAASIFEFNKVMRCMVDSKQWQDFD 402
Query: 312 PDPYAP-----LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKI 360
P P + +G D + + +VV+ + W + + +I
Sbjct: 403 PKAKRPIGAREVWLGYDPSRTRDNACLVVVAPPALPGEKFRVLEKHYWKGLNFQYQAKQI 462
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRN-RRTELHVK 419
+ + Y + ID GA D L R N + L +K
Sbjct: 463 GEVFKCYNVTYLGIDVTGIGAGVYDLLSKQ---------HPREAVAIHYSNDNKNRLVMK 513
Query: 420 MADWLEFASLINHSG---LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
M D ++ + L + ++K + + ++ R + D + +
Sbjct: 514 MIDVIDASRLQFDEEHKDMAMAFMAIKRVATNSGNNMTFKADRSELVGHADAFWAISHAV 573
Query: 477 AENP 480
P
Sbjct: 574 INEP 577
>gi|323185221|gb|EFZ70586.1| terminase, ATPase subunit [Escherichia coli 1357]
Length = 588
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQAGMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|326784094|ref|YP_004324487.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn1]
gi|310004826|gb|ADO99217.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
Syn1]
Length = 550
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 66/474 (13%), Positives = 129/474 (27%), Gaps = 77/474 (16%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
+ PE ++ + K F + L F +Q E +
Sbjct: 20 IDFTPEQVKEFI------KCKNDPIYFTKTYVQIVSLDEGLVPFKMWD-FQEELIRKFHK 72
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
N P R GK+T +L + ++V LAN + + L
Sbjct: 73 SRFNIAKLP------------RQTGKSTTVVSYLLHYLIFNDSVNVGILANKASTARDLL 120
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
A ++ LP ++ +++ T +
Sbjct: 121 -ARLATAYENLP-----------KWIQQGVVVWNKGNIELENGSKILAAST-------SA 161
Query: 185 VGHHNTYGMAIINDEASGTP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYE 239
I DE + P D + +T + I T K ++
Sbjct: 162 SAVRGMSFNIIFLDEFAFVPNHIADSFFASVYPTITSGKSTKVIIISTPQGMNHFYKMWQ 221
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+D+ ++ V G D + E I E +F
Sbjct: 222 DAVNGRNDYTYHEVHWSQVPGRDAKWKEETIKNTS--QRQFTQEFECEFLGSVDTLISAS 279
Query: 300 NIIEEALNRE----------PCPDPYAPLIMGCDIAE--EGGDNTVVVLRRGPVIEHL-- 345
+ A + P ++ D++ G + +V V +
Sbjct: 280 KLKALAFDEPITRNKGLDIYEKPKDKNEYLLTVDVSRGIGGDYSAFIVYDITTVPYKIVG 339
Query: 346 -FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQ 400
+ ++ N I+ + Y ++ + N+ G + LE + + G+
Sbjct: 340 KYRNNEIKPMLFPNVINDVARAYNNAWVLCEVNDVGDQVASILNFDLEYPNVLMCAMRGR 399
Query: 401 KRAVDLEFCRNRRTELHVKM------------ADWLEFASLI-NHSGLIQNLKS 441
+ + +T+L VKM +E LI N +I L +
Sbjct: 400 AGQIVGQGFSGNKTQLGVKMSVTVKKVGCANLKQIIEDDKLIFNDYEIISELTT 453
>gi|204929563|ref|ZP_03220637.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|204321282|gb|EDZ06482.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
Length = 588
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/451 (11%), Positives = 115/451 (25%), Gaps = 42/451 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-E 117
M H + R IG T A L T + A+ +
Sbjct: 144 MFEYQRHWWQAGVKHRIRNL----LKSRQIGATYFFAREALIDAITTGRNQIFLSASKAQ 199
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ + +K + + + + + + Y + +
Sbjct: 200 AHVFKQYIIDFAKEVDVELKGDPMTLSNGACLYFLGTNARTAQSYHGNLYLDEYFWIPKF 259
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+ + + H + + +S T A +
Sbjct: 260 QELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDIDLTHSNLA 319
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+ D R + + + R D + + +F
Sbjct: 320 RGLLC----PDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCEFIDDLASV 375
Query: 296 FIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTVVVL------- 336
F + ++ + + +G D A+ + GD+ V+
Sbjct: 376 FPLSELQACMVDSWEVWTDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCVVVAPPTVP 435
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
I W D R + I L ++Y I ID+ G + ++ V
Sbjct: 436 GGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYENVKAFFPAVRE 495
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
+ N + L +K D + L + + Q+ +++ +
Sbjct: 496 FVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRP 546
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
E+ R + A D + M+ P + +
Sbjct: 547 TYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|331672362|ref|ZP_08373153.1| terminase, ATPase subunit [Escherichia coli TA280]
gi|331070557|gb|EGI41921.1| terminase, ATPase subunit [Escherichia coli TA280]
Length = 588
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSLDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|169634245|ref|YP_001707981.1| phage-related terminase, ATPase subunit (GPP-like) [Acinetobacter
baumannii SDF]
gi|169153037|emb|CAP02098.1| phage-related terminase, ATPase subunit (GPP-like) [Acinetobacter
baumannii]
Length = 594
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/431 (12%), Positives = 110/431 (25%), Gaps = 40/431 (9%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-ETQLKTTLWAEVSKWLSLLPNKH 139
AI R IG T A + A+ + + T + + + + K
Sbjct: 167 AILKSRQIGATYYFAREAFIDALKTGRNQIFLSASKAQAHIFKTYIQQFAFEHTGVELKG 226
Query: 140 ----WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
Q+ + + + + H +
Sbjct: 227 DPIIIGNNQANLTFLGTNARTAQGHHGNFYFDEFFWTYGFNELNKVASGMAMHKKWRKTY 286
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
+ ++ + + D R +
Sbjct: 287 FSTPSTMAHQAYAFWTGERYNRGRPKDQRLNIDVSHDA----LKRGRYCEDKIWRQIVTI 342
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC---- 311
E + R+ ++ + QF S PLNI++ +
Sbjct: 343 LDAENGGCDLFDIDELRFEYSAEEFANLLMCQFIDD-GASIFPLNILQACMVDSWEAWAD 401
Query: 312 --------PDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTN 357
P P+ +G D AE G +VV+ I + D +
Sbjct: 402 DYKPFHARPLASRPVWVGYDPAETGDSAGLVVVAPPSVANGKFRILERHQFRGMDFKAQA 461
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+I + +Y I +D G + ++ +T+L
Sbjct: 462 EQIRQITLRYNVTYIGLDTTGMGTGVAQLVRQFFPNLTTFSYSPE---------VKTQLV 512
Query: 418 VKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
+K D + L + + Q+L S+K + + ++ + R + D + LM+
Sbjct: 513 LKTLDVIRNGRLEFDAGHTDIAQSLMSIKKTLTASQRQMTFTAGRSEEIGHADLAWALMH 572
Query: 475 TFAENPPRSDM 485
P
Sbjct: 573 AIYNEPLEGAT 583
>gi|293433090|ref|ZP_06661518.1| terminase [Escherichia coli B088]
gi|291323909|gb|EFE63331.1| terminase [Escherichia coli B088]
Length = 591
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/455 (10%), Positives = 122/455 (26%), Gaps = 47/455 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
W E + H ++ + K R IG T A+ +
Sbjct: 140 DIWAEEHLFEYQKHLRRNIGQQVRNILK-----SRQIGATWYFAFEAFENAVMTGDPQIF 194
Query: 112 CLANSETQ------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ + L+ P + + + + S +
Sbjct: 195 LSASKVQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELR--FLSTNKNTAQSYSGHLY 252
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + H+ + + ++ T + + R
Sbjct: 253 CDEYFWVPNFARLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGEEWKQGSKKRAAA 312
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
+ + + + ++ G + + E + RY ++ +
Sbjct: 313 QFPSFDEMRNG-GRLCPDGQWRY-VITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYM 368
Query: 286 GQFPQQDIDSFIPLNIIEEA---LNREPCPDPY-------APLIMGCDIAEEGGDNTVVV 335
F F + +E ++ +P P+ G D A G + V+
Sbjct: 369 CVFVDSKDSVF-SFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVI 427
Query: 336 LR------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + + +W + R +I L +KY + +D G D ++
Sbjct: 428 IAPPMYAAEKFRVLKVINWKGMNFRYQARQIELLFKKYNFTYLGVDVTGIGQGVFDNIQ- 486
Query: 390 LGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSF 445
R N + +L +K AD +E + L + + +++
Sbjct: 487 --------HFAMRVAVAIRYDMNTKNQLVLKAADVVESQRIEWDKNLKEIPASFMAVRRT 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + R + + + + P
Sbjct: 539 TTQSGNAMTFVADRSQDTGHAEAFWAITHALHNEP 573
>gi|323953478|gb|EGB49344.1| terminase [Escherichia coli H252]
Length = 588
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKNNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|322614428|gb|EFY11359.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322621507|gb|EFY18360.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322624368|gb|EFY21201.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322626565|gb|EFY23370.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322633573|gb|EFY30315.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322638384|gb|EFY35082.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322647317|gb|EFY43813.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322649287|gb|EFY45724.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322655993|gb|EFY52293.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322661388|gb|EFY57613.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322666960|gb|EFY63135.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322671329|gb|EFY67452.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322677664|gb|EFY73727.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681510|gb|EFY77540.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322683910|gb|EFY79920.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323195479|gb|EFZ80657.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323200466|gb|EFZ85546.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323203030|gb|EFZ88062.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323205271|gb|EFZ90246.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323210579|gb|EFZ95463.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323218140|gb|EGA02852.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323221594|gb|EGA06007.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323227645|gb|EGA11800.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323230903|gb|EGA15021.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323234745|gb|EGA18831.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323238784|gb|EGA22834.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323241484|gb|EGA25515.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323248370|gb|EGA32306.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323252865|gb|EGA36699.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257014|gb|EGA40723.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323260513|gb|EGA44124.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323264430|gb|EGA47936.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323269565|gb|EGA53018.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
Length = 588
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/459 (11%), Positives = 122/459 (26%), Gaps = 42/459 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + + E K + R IG T A L +
Sbjct: 132 QIEKLEEIFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSK 167
A+ + + + +K + + + + + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDPMVLPNGAALYFLGTNARTAQSYHGNLYLD 251
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + + + + H + + +S T A +
Sbjct: 252 EYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDI 311
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ D R + + + R D + + +
Sbjct: 312 DLTHSNLARGLLC----PDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCE 367
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTVVV 335
F F + ++ + + +G D A+ + GD+ V
Sbjct: 368 FIDDLASVFPLSELQACMVDSWEVWTDFQSLALRPFGWREVWIGYDPAKGTQNGDSAGCV 427
Query: 336 LR-------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ I W D R + I L ++Y I ID+ G + ++
Sbjct: 428 VMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYENVK 487
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSF 445
V + N + L +K D + L + + Q+ +++
Sbjct: 488 AFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRA 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 539 TTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|229589112|ref|YP_002871231.1| terminase ATPase subunit [Pseudomonas fluorescens SBW25]
gi|229360978|emb|CAY47838.1| terminase, ATPase subunit [Pseudomonas fluorescens SBW25]
Length = 585
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/431 (11%), Positives = 106/431 (24%), Gaps = 39/431 (9%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET----QLKTTLWAEVSKWLSLLP 136
AI R IG T A L T + A+ + +A + L
Sbjct: 160 AILKSRQIGATYYFAREALIDALTTGRNQIFLSASKNQAHIFKAYIQAFAREVVGVELTG 219
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ + + + + + + Y
Sbjct: 220 DPIILGNGAELHFLGTNARTAQGYHGNFYFDEFFWTFKFKELNKVASGMAMQKQYRRTYF 279
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
+ +S + + + + D R +
Sbjct: 280 STPSSMAHEAYTFWTGERFNKGKPASQRVKIDVSHNA----LQQGRLCEDRVWRQIVTIL 335
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--- 313
E + R D++ + + QF S PL +++ +
Sbjct: 336 DAEDRGCDLFDLDELRQEYDAEAFQNLLMCQFIDD-GASIFPLAMLQPCMVDSWDLWAQD 394
Query: 314 ---------PYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNN 358
+ +G D AE G +VV+ + + D
Sbjct: 395 YKPFAARPFGDRQVWVGYDPAESGDSAGLVVIAPPMVPGGKFRVLEKHQFRGMDFAAQAE 454
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
I + ++Y I ID G+ ++ ++ +T L +
Sbjct: 455 AIRQVTKRYWVTYIGIDITGMGSGVAQLVKQFFPNITAFSYSPE---------VKTRLVL 505
Query: 419 KMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K D ++ L + L Q+L +++ I + + + R D + +
Sbjct: 506 KAYDVIKNGRLEFDAGWTDLAQSLMAIRKTITASGRQFTYTAGRTDETGHADLAWATFHA 565
Query: 476 FAENPPRSDMD 486
P
Sbjct: 566 LHNEPLEGQTT 576
>gi|300310242|ref|YP_003774334.1| DNA-dependent ATPase terminase subunit [Herbaspirillum seropedicae
SmR1]
gi|300073027|gb|ADJ62426.1| DNA-dependent ATPase terminase subunit [Bacteriophage phi CTX]
related protein [Herbaspirillum seropedicae SmR1]
Length = 593
Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/473 (11%), Positives = 120/473 (25%), Gaps = 52/473 (10%)
Query: 55 QLEFMEVVDA---HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
Q +E + E + + + R IG T A L +
Sbjct: 140 QQRIIEAFNDSLFDYQKVWFRNGSERTRIILKS-RQIGATWYFAREALIDAIQTGRNQIF 198
Query: 112 CLANSETQ----------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
A+ K E+S +LPN + A Y +
Sbjct: 199 LSASKSQAHVFKQYIIQFAKDACGVELSGDPIVLPNGAHLYFLGTNARTAQGYHGNFYFD 258
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
+ + + + H + + ++ T + +R A
Sbjct: 259 ------EFFWTHNFTELNKVASGMALHKKWRKTYFSTPSATTHQAYSFWTGEAFNKRRAK 312
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ + + F W++ G F + + D
Sbjct: 313 GDKVNIDVSHK---RLSSGFTGEDKIWRQIVTIMDAAAGGCDLFDIDELRDFEYSPDQFD 369
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP----------YAPLIMGCDIAEEGGDN 331
+ F F ++ ++ D + P+ +G D + G
Sbjct: 370 NLLMCNFIDDSASVFPLADLQRGMVDSWVDWDDYKPFTARPFGHRPVWIGYDPSLTGDSA 429
Query: 332 TV------VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
++ I W D I + +Y I ID G
Sbjct: 430 GCSVIAPPLIPGGNFRILERHQWRGKDFAEQAALIKEMCGRYNVQYIGIDTTGMGVGVYP 489
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSL 442
++ V + +T + +K + + L + + Q+ ++
Sbjct: 490 LVKQFFPGVTAISYSPE---------VKTRMVLKAQNIIRSGRLQFDAGWTDIAQSFMAI 540
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + P+ + ++ R + D + +M+ P S ++
Sbjct: 541 RKILTPSGRAVTYDAGRSEETGHADLAWSVMHALDYEPFEGTTA-NNTSSMEF 592
>gi|197249763|ref|YP_002147654.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197213466|gb|ACH50863.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
Length = 588
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 116/461 (25%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E V + E K + R IG T A L +
Sbjct: 132 QIEKLEEVFHASMFDYQRHWFEAGKINRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T + +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRSKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFQALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVLR-------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R + I L ++Y I ID+ G +
Sbjct: 426 CVVMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|312601717|gb|ADQ92391.1| terminase ATPase subunit [Salmonella phage RE-2010]
gi|321223512|gb|EFX48577.1| Phage terminase, ATPase subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
Length = 572
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/459 (11%), Positives = 122/459 (26%), Gaps = 42/459 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E V + E K + R IG T A L +
Sbjct: 116 QIEKLEEVFHASMFDYQRHWFEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 175
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSK 167
A+ + + + +K + + + + + +
Sbjct: 176 FLSASKAQAHVFKQYIIDFAKEVDVELKGDPMVLPNGAALYFLGTNARTAQSYHGNLYLD 235
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + + + + H + + +S T A +
Sbjct: 236 EYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDI 295
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ + D R + + + R D + + +
Sbjct: 296 NLTHSNLARGLLC----PDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCE 351
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTVVV 335
F F + ++ + + +G D A+ + GD+ V
Sbjct: 352 FVDDLASVFPLSELQACMVDSWEVWTDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCV 411
Query: 336 LR-------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ I W D R + I L ++Y I ID+ G + ++
Sbjct: 412 VMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYENVK 471
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSF 445
V + N + L +K D + L + + Q+ +++
Sbjct: 472 AFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRA 522
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 523 TTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 561
>gi|323190958|gb|EFZ76225.1| terminase, ATPase subunit [Escherichia coli RN587/1]
Length = 591
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/460 (11%), Positives = 124/460 (26%), Gaps = 57/460 (12%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H N++ + K R IG T A+ +
Sbjct: 140 DAWAEEHLFEYQKHLRNNIGQLVRNILK-----SRQIGATWYFAFEAFENAVMTGDPQIF 194
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHC 160
A+ AEV + + + +F + + +
Sbjct: 195 LSASKAQ-------AEVFRSYIVNIAEQYFGITLTGNPIRLSNGAELRFLSTNKNTAQSY 247
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
S + Y + + + H+ + + ++ T + +
Sbjct: 248 SGHLYCDEYFWVPNFAKLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGDEWKQGSK 307
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
R I + + + + ++ G + + E + RY +
Sbjct: 308 KRAAIKFPSFNEMRDG-GRLCPDGQWRY-VITMEDAIAGGFNLANIEKLRNRY--NDATF 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEA---LNREPCPDPY-------APLIMGCDIAEEGGD 330
+ F F + +E ++ +P P+ G D A G
Sbjct: 364 NMLYMCVFVDSKDSVF-SFSDLEACGVEIDTWQDHNPDAARPFGDRPVWGGFDPARSGDL 422
Query: 331 NTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+ V++ + + W + R +I L +KY + +D G
Sbjct: 423 SCFVIIAPPMLAVEKFRVLKVIYWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGVF 482
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINH---SGLIQNLK 440
D ++ R N + +L +K D +E + + +
Sbjct: 483 DNIQ---------HFAMRVAVPIRYDLNTKNKLVLKAVDVVESQRIEWDKNLKEIAASFM 533
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
S++ + + + R + + + + P
Sbjct: 534 SVRRTTTQSGNAMTFVADRSQDTGHAEAFWAITHGLHNEP 573
>gi|110804738|ref|YP_688258.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
gi|110614286|gb|ABF02953.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
Length = 255
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/231 (16%), Positives = 66/231 (28%), Gaps = 47/231 (20%)
Query: 295 SFIPLNIIEEALNREPCP--DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD 352
+ I L+ IE A++ +P +G D+A+ G D V R G V+ +W +
Sbjct: 10 AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 69
Query: 353 LRTTNNKISGL-VEKYRPDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQK 401
+ R I+ D+ GA + V
Sbjct: 70 DELLKSCQRTYQAALEREADIVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNA 129
Query: 402 RA------------VDLEFCRNRRTELHVKMAD-------WLEFASLINHSGLIQ----- 437
A + +F N + + +AD + LI
Sbjct: 130 GAGVHEPDDEYNGIPNKDFFANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRC 189
Query: 438 -------NLKSLKSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAE 478
+ G + +ESK+ + S + +D + FA
Sbjct: 190 PLLEKLKLELTTPHRDFDRNGRVMVESKKDLAKREIPSPNVADAFIMAFAP 240
>gi|218704209|ref|YP_002411728.1| putative Terminase, ATPase subunit from bacteriophage origin
[Escherichia coli UMN026]
gi|218431306|emb|CAR12184.1| Putative Terminase, ATPase subunit from bacteriophage origin
[Escherichia coli UMN026]
Length = 591
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/455 (10%), Positives = 123/455 (27%), Gaps = 47/455 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H ++ + K R IG T A+ +
Sbjct: 140 DTWADEHLFEYQKHLRRNIGQQVRNILK-----SRQIGATWYFAFEAFENAVMTGDPQIF 194
Query: 112 CLANSETQ------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ + L+ P + + + + S +
Sbjct: 195 LSASKVQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELR--FLSTNKNTAQSYSGHLY 252
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + H+ + + ++ T + + R
Sbjct: 253 CDEYFWVPNFARLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGEEWKQGSKKRAAA 312
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
+ + + + ++ G + + E + RY ++ +
Sbjct: 313 RFPSFDEMRNG-GRLCPDGQWRY-VITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYM 368
Query: 286 GQFPQQDIDSFIPLNIIEEA---LNREPCPDPY-------APLIMGCDIAEEGGDNTVVV 335
F F + +E ++ +P P+ G D A G + V+
Sbjct: 369 CVFVDSKDSVF-SFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVI 427
Query: 336 LR------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + + +W + R +I L +KY + +D G D ++
Sbjct: 428 IAPPMYAAEKFRVLKVINWKGMNFRYQARQIELLFKKYNFTYLGVDVTGIGQGVFDNIQ- 486
Query: 390 LGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSF 445
R N + +L +K AD +E + L + + +++
Sbjct: 487 --------HFAMRVAVAIRYDMNTKNQLVLKAADVVESQRIEWDKNLKEIPASFMAVRRT 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + R + + + + P
Sbjct: 539 TTQSGNAMTFVADRSQDTGHAEAFWAITHALHNEP 573
>gi|326783087|ref|YP_004323484.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM2]
gi|310005505|gb|ADO99893.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM2]
Length = 560
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 62/441 (14%), Positives = 121/441 (27%), Gaps = 60/441 (13%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ K F +++ + F +Q E +E H N P
Sbjct: 31 KCKEDPVYFAMNYIKIISLDEGIVPFKMWD-FQQELIESFHEHRFNIAKLP--------- 80
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R GK+T +L + ++V LAN + + L + + LP
Sbjct: 81 ---RQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDLL-SRLQLAYEQLPLWIQQG 136
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + + + + I DE +
Sbjct: 137 IVVYNKGSMELENGSKILA------------------ASTSASAVRGMSFNIIFLDEFAF 178
Query: 203 TP----DVINLGILGFLTERN-ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
P + + +T I T N K + K + + ++
Sbjct: 179 IPNHIAEQFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLWVDAQKGRNGYAWNEVHWSK 238
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE-------- 309
V G D + E IA E +F D+ I + + +
Sbjct: 239 VPGRDAKWKEQTIANTSE--RQFTQEFDCEFLGSV-DTLITASKLRVLTYDDVMTTNGSL 295
Query: 310 ---PCPDPYAPLIMGCDIAEE-GGDNTVVVLRRGPVIEHLFDWSKTD----LRTTNNKIS 361
P I+ D++ D + V+ D N I
Sbjct: 296 DIYEKPIDKHEYIITVDVSRGLAQDYSAFVVIDITHAPWRLVAKYRDKDVRPMLFPNIIF 355
Query: 362 GLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ Y ++ + N+ G LE + + G+ + + +T++
Sbjct: 356 NVATNYNKAYVLTEVNDIGEAVAGSLFYDLEYENTLMCAMRGRAGQIVGQGFSGNKTQMG 415
Query: 418 VKMADWLEFASLINHSGLIQN 438
VKM+ ++ N LI++
Sbjct: 416 VKMSKTVKAQGCSNLKTLIED 436
>gi|330503113|ref|YP_004379982.1| phage P2 terminase ATPase subunit, gpP-like protein [Pseudomonas
mendocina NK-01]
gi|328917399|gb|AEB58230.1| phage P2 terminase ATPase subunit, gpP-like protein [Pseudomonas
mendocina NK-01]
Length = 585
Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats.
Identities = 61/428 (14%), Positives = 115/428 (26%), Gaps = 37/428 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE--TQLKTTLWAEVSKWL--SLLPN 137
I R IG T A L T + A+ Q KT + A +++ L L +
Sbjct: 163 ILKSRQIGATFYFAREALIDAITTGRNQIFLSASKAQAHQFKTYMQAFLNETLGVKLTGD 222
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + S + + + + + H + +
Sbjct: 223 PIVLWNNAELHFLGTNFRTAQGRSGNFYFDEFFWVHGFAEINKVASGMALHKRWRKTYFS 282
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
+S L + I ++ D R +
Sbjct: 283 TPSSMAHPAYVYWTGERLNKGRPTAQHIKQDVSHDA----LQMGRLCDDKVWRQIVTILD 338
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
E + R D + QF DS PL +++ + + P
Sbjct: 339 AEARGCDLFDLDELRLEYDGPAFDNLLMCQFVDD-GDSIFPLTMLQPCMVESWDWPDFKP 397
Query: 318 ----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKIS 361
+ +G D AE G ++VL + F + D KI
Sbjct: 398 FAARPFGDRQVWLGYDPAENGDSAGLMVLAPPTEPGGKFRVLDRFQFRGMDFEAQAEKIR 457
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
L + Y I ID G + ++ +T+L +K
Sbjct: 458 QLTQIYWVTYIGIDTTGMGTGVAQLVRQFFPNLRTFSYSPE---------VKTQLVMKAW 508
Query: 422 DWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
D + L + + Q+L +++ + P+ + R + D + L +
Sbjct: 509 DVVRKGRLEFDAGATDIAQSLMAIRKTMTPSGKSFTYTAGRSEATGHADLAWALFHALFN 568
Query: 479 NPPRSDMD 486
P
Sbjct: 569 EPLEGRTS 576
>gi|186895208|ref|YP_001872320.1| hypothetical protein YPTS_1896 [Yersinia pseudotuberculosis PB1/+]
gi|186698234|gb|ACC88863.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
PB1/+]
Length = 587
Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/447 (12%), Positives = 107/447 (23%), Gaps = 39/447 (8%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E M + + +P+ + R +G T +W L + A+
Sbjct: 142 ESMFDYQRNWYEAGLSPDYRIRNL--LKSRQVGATYFFSWEALLDALDTGRNQMFVSASK 199
Query: 117 E--TQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
Q K + A + + L + S + Y +
Sbjct: 200 AQAHQFKNYIVAAARQVDVDLRGEVIILPNGAEMHFLGTNASTAQGRPGNLYLDEYFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
R + + Y + +S + + + A I +
Sbjct: 260 GFQKLRRAASGMASQKKYRSTYFSTPSSTSHEAYPFWAGTLFNKGKAKDKRIEI----DV 315
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQD 292
S D R + I +SD F +
Sbjct: 316 SYPRLAGGRLCEDKQYRQIVTIEDALKGGCDLF-DIDELRNENSDQDFENLFMCGFIDDN 374
Query: 293 IDSFIPLNIIEEALNREPCPDP----------YAPLIMGCDIAEEGGDNTV------VVL 336
+F + ++ P+ +G D A G VV
Sbjct: 375 ASTFKLAEMQRCMVDSWEKWTDVKLLALRPFGDRPVWIGYDPASTGDSAGCAVIAPPVVA 434
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ W D + I + E+Y I ID G + V
Sbjct: 435 GGKFRVLERHQWKGMDFADQASNIKKITERYNVTYIGIDDTGLGRSVTQLVRQFFPAVNA 494
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
+ + +L K + ++ L + + S++ +
Sbjct: 495 IHYS---------LEMKADLIYKAKNIIQGGRLEFDAGCIDIATAFMSIRKTMTATGRNA 545
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENP 480
+ R +G D + +M+ P
Sbjct: 546 TFVTSRSEGVSHGDVAWAIMHALFHEP 572
>gi|168752369|ref|ZP_02777391.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4113]
gi|168756331|ref|ZP_02781338.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4401]
gi|168770046|ref|ZP_02795053.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4486]
gi|168775976|ref|ZP_02800983.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4196]
gi|168782400|ref|ZP_02807407.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4076]
gi|168799001|ref|ZP_02824008.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC508]
gi|195938306|ref|ZP_03083688.1| Phage protein P [Escherichia coli O157:H7 str. EC4024]
gi|208807993|ref|ZP_03250330.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4206]
gi|208814612|ref|ZP_03255941.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4045]
gi|208819940|ref|ZP_03260260.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4042]
gi|209400321|ref|YP_002271352.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4115]
gi|254793895|ref|YP_003078732.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
TW14359]
gi|187768594|gb|EDU32438.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4196]
gi|188013771|gb|EDU51893.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4113]
gi|189000116|gb|EDU69102.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4076]
gi|189356443|gb|EDU74862.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4401]
gi|189360957|gb|EDU79376.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4486]
gi|189378450|gb|EDU96866.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC508]
gi|208727794|gb|EDZ77395.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4206]
gi|208735889|gb|EDZ84576.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4045]
gi|208740063|gb|EDZ87745.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4042]
gi|209161721|gb|ACI39154.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
EC4115]
gi|254593295|gb|ACT72656.1| phage large terminase subunit GpP [Escherichia coli O157:H7 str.
TW14359]
gi|326344901|gb|EGD68646.1| Phage terminase, ATPase subunit [Escherichia coli O157:H7 str.
1125]
Length = 590
Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 114/453 (25%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 EYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWF-------EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNSAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFLLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|322833247|ref|YP_004213274.1| hypothetical protein Rahaq_2540 [Rahnella sp. Y9602]
gi|321168448|gb|ADW74147.1| hypothetical protein Rahaq_2540 [Rahnella sp. Y9602]
Length = 595
Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/459 (11%), Positives = 124/459 (27%), Gaps = 55/459 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
++ E + H N++ + K R IG T A +
Sbjct: 144 DAFAEEHLFGYQKHLRNNLAQQIRNILK-----SRQIGATWYFAIEAFENAVMTGDPQIF 198
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHC 160
A+ AEV + + + +F + + +
Sbjct: 199 LSASKAQ-------AEVFRSYIVNIAEQYFGITLTGNPIRLSNGAELRFLSTNKNTAQSY 251
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
S + Y + + + H+ + + ++ T + +
Sbjct: 252 SGHLYCDEYFWVPNFAKLNEVASAMATHDHWRTTYFSTPSAKTHQAYPFWTGEEWKQGDK 311
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
R + + + + ++ G + + + + RY D+
Sbjct: 312 ERQTAVFPTFDEMRDG-GRLCPDGQWRY-VITMEDAVKGGFNRASIDKLRNRYNRDT--F 367
Query: 281 RVEVCGQFPQQDIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDN 331
+ F F ++ ++ A ++ P+ P + G D A G +
Sbjct: 368 NMLYMCVFVDSKDSVFKFSDLEICGVDVADWQDHDPNAERPFGNREVWGGFDPARSGDTS 427
Query: 332 T------VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
T + + LF W + +I L KY I +D G +
Sbjct: 428 TFAIVAPPLYAVEKFRVLCLFHWKGMNFAYQAAQIKKLFGKYNMTYIGVDVTGIGRGVFE 487
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLI---NHSGLIQNLKS 441
+E R +T L +KM D + L ++ + + S
Sbjct: 488 LIE---------HFALREAVAIHYGMETKTRLVLKMIDVIGAKRLEWNKDNREIAASFLS 538
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
++ + + ++ R D + + P
Sbjct: 539 IRHTSTASGNAMTFKADRTVETGHADAFWAIAHAVINEP 577
>gi|238920149|ref|YP_002933664.1| hypothetical protein NT01EI_2255 [Edwardsiella ictaluri 93-146]
gi|238869718|gb|ACR69429.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 601
Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 58/449 (12%), Positives = 122/449 (27%), Gaps = 49/449 (10%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ H ++ + K R IG T A+ + A S
Sbjct: 153 LFKYQLHLRDNKFRRVRNLLK-----ARQIGATYYFAFEAFEDAVLTGDNQIFLSA-SRR 206
Query: 119 QLK-------TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
Q + E L P + + A + S + Y
Sbjct: 207 QAEVFRTYILKIAQVEFGIQLKGNPIR--LSNMAELHFLATNSNTAQSNSGHLYIDEYLW 264
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + + + + + ++ NA R ++
Sbjct: 265 ISKFTTFNEVASGMATQSHWRLTYFSTPSAKNHQGYAFWSGDEWRRGNAERKSVVFPAFD 324
Query: 232 RLSGKFYEIFNKPLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
L E P W+ ++ +G + + E + RYG + F
Sbjct: 325 ELRDGGREC---PDKQWRYVVTMEDAIADGFNRADIEELRERYGE--NAFNRLYMCVFVD 379
Query: 291 QDIDSFIPLNIIEEA----LNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVL----- 336
F ++ + ++ PD AP + G D A G + T VV+
Sbjct: 380 DKDSVFDFAKLVRCGVDPHIWQDFHPDEAAPLGNREVWGGFDPARSGDNATFVVIAVPLL 439
Query: 337 -RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+ W + ++I + +Y I ID G + ++
Sbjct: 440 AVERFRVLEKHHWRGLSFQWMADQIRTIKSRYNMTHIGIDVTGIGYGVYELVQG------ 493
Query: 396 RVLGQKRAVDLEFCR-NRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+R + L +KM D ++ + + + ++K +
Sbjct: 494 ---FARREAKAIHYSVESKNRLVLKMLDVIDSNRIEWDEDARDIPASFLAIKQSATASGN 550
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + R D + + A P
Sbjct: 551 AVTFTADRTDETGHADIFFAIAHALANEP 579
>gi|238786939|ref|ZP_04630739.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
gi|238724727|gb|EEQ16367.1| Terminase, ATPase subunit [Yersinia frederiksenii ATCC 33641]
Length = 587
Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/447 (12%), Positives = 107/447 (23%), Gaps = 39/447 (8%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E M + + +P+ + R IG T +W L + A+
Sbjct: 142 ESMFGYQRNWYEAGLSPDFRIRNL--LKSRQIGATYFFSWEALLDALDTGRNQMFVSASK 199
Query: 117 E--TQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
Q K + A + + L + S + Y +
Sbjct: 200 AQAHQFKNYIVAAARQVDVDLRGEVIILPNGAEMHFLGTNASTAQGRPGNLYLDEYFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
R + + Y + +S + + + A I +
Sbjct: 260 GFQKLRRAASGMASQKRYRSTYFSTPSSTSHEAYPFWAGTLFNKGKAKDKRIEI----DV 315
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQD 292
S D R + I +SD F +
Sbjct: 316 SYPRLAAGRLCEDKQYRQIVTIEDALKGGCDLF-DIDELRNENSDEDFENLFMCGFIDDN 374
Query: 293 IDSFIPLNIIEEALNREPCPDP----------YAPLIMGCDIAEEGGDNTV------VVL 336
+F + ++ P+ +G D A G VV
Sbjct: 375 ASTFKLAEMQRCMVDSWEKWSDVKLLALRPFGDRPVWIGYDPASTGDSAGCAVIAPPVVA 434
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ W D + I + E+Y I ID G + V
Sbjct: 435 GGKFRVLERHQWKGMDFADQASNIKKITERYNVTYIGIDDTGLGRSVTQLVRQFFPAVNA 494
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
+ + +L K + ++ L + + S++ + +
Sbjct: 495 IHYS---------LEMKADLIYKAKNIIQGGRLEFDAGCIDIATAFMSIRKTMTASGRNA 545
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENP 480
+ R K D + +M+ P
Sbjct: 546 TFVTDRSKDVSHGDVAWAIMHALFHEP 572
>gi|16763092|ref|NP_458709.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|25315565|pir||AH1037 probable terminase chain [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16505400|emb|CAD06749.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 588
Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 52/461 (11%), Positives = 118/461 (25%), Gaps = 42/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E V + E K + R IG T A L +
Sbjct: 132 QIEKLEEVFHASMFDYQRHWFEAGKINRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSK 167
A+ + + + +K + + + + + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDPMVLPNGAALYFLGTNARTAQSYHGNLYLD 251
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + + + + H + + +S T A +
Sbjct: 252 EYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDI 311
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ D R + + + R D + + +
Sbjct: 312 DLTHSNLARGLLC----PDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCE 367
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE-EGGDNTVVVL 336
F F + ++ + + +G D A+ ++ +
Sbjct: 368 FIDDLASVFPLSELQACMVDSWEVWTDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCV 427
Query: 337 RR--------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
I W D R + I L ++Y I ID+ G + ++
Sbjct: 428 VIAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYENVK 487
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSF 445
V + N + L +K D + L + + Q+ +++
Sbjct: 488 AFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRA 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
+ E+ R + A D + M+ P + +
Sbjct: 539 TTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGEAA 579
>gi|197251462|ref|YP_002147591.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197215165|gb|ACH52562.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|312913681|dbj|BAJ37655.1| hypothetical protein STMDT12_C27120 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
Length = 594
Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 52/454 (11%), Positives = 119/454 (26%), Gaps = 45/454 (9%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+ LE + H ++++ + K R IG T + +
Sbjct: 143 DRFALEHLFGYQKHLRDNLHQQIRNILK-----SRQIGATWYFSIEAFENAVMTGDPQIF 197
Query: 112 CLANSETQ------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ + L+ P + + + + S +
Sbjct: 198 LSASKAQAEVFRSYIVNIAEQYFGVELTGNPIRLSNGAELR--FLSTNKNTAQSYSGHLY 255
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + H+ + + +S T + R +
Sbjct: 256 CDEYFWVPNFAKLNEVASAMATHDKWRTTYFSTPSSKTHQAYPFWTGEEWKRGDKKRARV 315
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
+ L + + ++ G + + + + RY D+ +
Sbjct: 316 AFPTEKELRDG-GRLCPDGQWRYI-ITLEDAIAGGFNLASIDKLRNRYNRDT--FNMLYM 371
Query: 286 GQFPQQDIDSF---------IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT---- 332
F F + +I E+ P P + G D A G +T
Sbjct: 372 CVFVDSKDSVFSFSHVERCCVDPDIWEDHDENLPRPFGNREVWAGYDPARSGDTSTFVII 431
Query: 333 --VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
+V + +F W + + +I L +Y I ID G+ + ++
Sbjct: 432 APPIVAGEKFRVLRVFHWQGMNWKWQAAQIKKLFGQYNMTYIGIDITGLGSGVFEDVQ-- 489
Query: 391 GYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSFI 446
R + L +KM D +E + + + +++
Sbjct: 490 -------HFAMRQAVAIRYGVETKNRLVMKMIDVIEDNRVEWDKEKTEIAASFMTIRRTS 542
Query: 447 VPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + R D + + P
Sbjct: 543 TASGNAMTFVADRTAETGHADSFWAIAHAIDNEP 576
>gi|170769222|ref|ZP_02903675.1| phage large terminase subunit GpP [Escherichia albertii TW07627]
gi|170121874|gb|EDS90805.1| phage large terminase subunit GpP [Escherichia albertii TW07627]
Length = 590
Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/453 (12%), Positives = 113/453 (24%), Gaps = 45/453 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 147 DYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 201
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 202 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 260 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 319
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 320 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 376
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 377 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 436
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 437 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 487
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ +
Sbjct: 488 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSIGRSAT 547
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 548 YEASRSEEASHADLAWATMHALLNEPLTAGIST 580
>gi|51596194|ref|YP_070385.1| gpP phage P2 terminase [Yersinia pseudotuberculosis IP 32953]
gi|170024552|ref|YP_001721057.1| hypothetical protein YPK_2327 [Yersinia pseudotuberculosis YPIII]
gi|51589476|emb|CAH21098.1| similar to gpP phage P2 TERMINASE [Yersinia pseudotuberculosis IP
32953]
gi|169751086|gb|ACA68604.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
YPIII]
Length = 587
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 54/447 (12%), Positives = 106/447 (23%), Gaps = 39/447 (8%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E M + + +P+ + R +G T +W L + A+
Sbjct: 142 ESMFDYQRNWYEAGLSPDFRIRNF--LKSRQVGATYFFSWEALLDALDTGRNQMFVSASK 199
Query: 117 E--TQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
Q K + A + + L + S + Y +
Sbjct: 200 AQAHQFKNYIVAAARQVDVDLRGEVIILPNGAEMHFLGTNASTAQGRPGNLYLDEYFWIP 259
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
R + + Y + +S + + + A I +
Sbjct: 260 GFQKLRRAASGMASQKRYRSTYFSTPSSTSHEAYPFWAGTLFNKGKAKDKRIEI----DV 315
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQD 292
S D R + I +SD F +
Sbjct: 316 SYPRLAGGRLCEDKQYRQIVTIEDALKGGCDLF-DIDELRNENSDQDFENLFMCGFIDDN 374
Query: 293 IDSFIPLNIIEEALNREPCPDP----------YAPLIMGCDIAEEGGDNTV------VVL 336
+F + ++ P+ +G D A G VV
Sbjct: 375 ASTFKLAEMQRCMVDSWEKWTDVKLLALRPFGDRPVWIGYDPASTGDSAGCAVIAPPVVA 434
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ W D + I + E+Y I ID G + V
Sbjct: 435 GGKFRVLERHQWKGMDFADQASNIKKITERYNVTYIGIDDTGLGRSVTQLVRQFFPAVNA 494
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
+ + +L K + + L + + S++ +
Sbjct: 495 IHYS---------LEMKADLIYKAKNIIHGGRLEFDAGCIDIATAFMSIRKTMTATGRNA 545
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENP 480
+ R +G D + +M+ P
Sbjct: 546 TFVTSRSEGVSHGDVAWAIMHALFHEP 572
>gi|168822445|ref|ZP_02834445.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205341120|gb|EDZ27884.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
Length = 594
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 54/459 (11%), Positives = 123/459 (26%), Gaps = 55/459 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+ LE + H ++++ + K R IG T + +
Sbjct: 143 DRFALEHLFGYQKHLRDNLHQQIRNILK-----SRQIGATWYFSIEAFENAVMTGDPQIF 197
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHC 160
A+ AEV + + + +F ++ + +
Sbjct: 198 LSASKAQ-------AEVFRSYIVNIAEQYFGVELTGNTIRLSNGAELRFLSTNKNTAQSY 250
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
S + Y + + + H+ + + +S T +
Sbjct: 251 SGHLYCDEYFWVPNFAKLNEVASAMATHDKWRTTYFSTPSSKTHQAYPFWTGEEWKRGDK 310
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
R + + L + + ++ G + + + + RY D+
Sbjct: 311 KRARVAFPTEKELRDG-GRLCPDGQWRYI-ITLEDAIAGGFNLASIDKLRNRYNRDT--F 366
Query: 281 RVEVCGQFPQQDIDSF---------IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
+ F F + +I E+ P P + G D A G +
Sbjct: 367 NMLYMCVFVDSKDSVFSFSHVERCCVDPDIWEDHDENLPRPFGNREVWAGYDPARSGDTS 426
Query: 332 T------VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
T +V + +F W + + +I L +Y I ID G+ +
Sbjct: 427 TFVIIAPPIVAGEKFRVLRVFHWQGMNWKWQAAQIKKLFGQYNMTYIGIDITGLGSGVFE 486
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSG---LIQNLKS 441
++ R + L +KM D +E + + + +
Sbjct: 487 DVQ---------HFAMRQAVAIRYGVETKNRLVMKMIDVIEDNRVEWDKEKTEIAASFMT 537
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
++ + + + R D + + P
Sbjct: 538 IRRTSTASGNAMTFVADRTAETGHADSFWAIAHAIDNEP 576
>gi|262273310|ref|ZP_06051125.1| terminase [Grimontia hollisae CIP 101886]
gi|262222683|gb|EEY73993.1| terminase [Grimontia hollisae CIP 101886]
Length = 594
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 53/453 (11%), Positives = 109/453 (24%), Gaps = 41/453 (9%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
N I R IG T A L V A S Q
Sbjct: 155 YQLTMRENRHQRIRNILKSRQIGATYYFACEALEGAVLTGDNQVFLSA-SRAQA-EIFRT 212
Query: 127 EVSKW------LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+ + L N + + + Y + + +
Sbjct: 213 YIINIAREFLGIELSGNPIILSNGAELRFCSTNSKTAQGFHGHVYVDEYFWIPKFDELNK 272
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
+ + H T+ + +S T R +
Sbjct: 273 LASAMATHKTWRKTYFSTPSSKTHQAYPFWTGDTWRGNANTREHVEFPTFEDFRN--GGA 330
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
++ G D + + Y + F + F
Sbjct: 331 LCPDKHWRYVVTLEDAAAGGCDLFDIDELRDEYSKND--FANLFMCVFVDGNASVFTFSK 388
Query: 301 I----IEEALNREPCPDPYAPL-----IMGCDIAEEGGDNTVVVLR------RGPVIEHL 345
+ ++ + ++ PD P +G D + + +VV+ +
Sbjct: 389 LEKCMVDASKWKDFKPDAARPYANQEVWLGYDPSRTRDNACLVVIAPPQTHAEVFRVLEK 448
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
W + + ++I +Y I ID G D + R
Sbjct: 449 HYWKGLNFQYQASQIDEAFHRYHVTYIGIDTTGVGYGVWDLVSAA---------HPREAV 499
Query: 406 LEFCRNR-RTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGELAIESKRVK 461
N + L +KM D ++ L + + ++K + + +++R
Sbjct: 500 AIHYSNENKNRLVLKMIDVIDAGRLQYDAEHKDIAMAFMAIKRVASNSGNMMTFKAERSD 559
Query: 462 GAKSTDYSDGLMYTFA-ENPPRSDMDFGRCPSY 493
D + + E +D G ++
Sbjct: 560 TTGHADAFWAIAHALINEPLNTADAQRGSSYTF 592
>gi|34335039|gb|AAQ65014.1| unknown [synthetic construct]
gi|301159280|emb|CBW18795.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|323131065|gb|ADX18495.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
Length = 588
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 55/459 (11%), Positives = 121/459 (26%), Gaps = 42/459 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E V + E K + R IG T A L +
Sbjct: 132 QIEKLEEVFHASMFDYQRHWFEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSK 167
A+ + + + +K + + + + + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDPMVLPNGAALYFLGTNARTAQSYHGNLYLD 251
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + + + + H + + +S T A +
Sbjct: 252 EYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDI 311
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ D R + + + R D + + +
Sbjct: 312 DLTHSNLARGLLC----PDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCE 367
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTVVV 335
F F + ++ + + +G D A+ + GD+ V
Sbjct: 368 FVDDLASVFPLSELQACMVDSWEVWTDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCV 427
Query: 336 LR-------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ I W D R + I L ++Y I ID+ G + ++
Sbjct: 428 VMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYENVK 487
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSF 445
V + N + L +K D + L + + Q+ +++
Sbjct: 488 AFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRA 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 539 TTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|168262802|ref|ZP_02684775.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|205348497|gb|EDZ35128.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
Length = 591
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/455 (11%), Positives = 121/455 (26%), Gaps = 47/455 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H ++ + K R IG T A+ +
Sbjct: 140 DTWAEEHLFEYQKHLRRNIGQLVRNILK-----SRQIGATWYFAFEAFENAVMTGDPQIF 194
Query: 112 CLANSETQ------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ + L+ P + + + + S +
Sbjct: 195 LSASKVQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELR--FLSTNKNTAQSYSGHLY 252
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + H+ + + ++ T + R I
Sbjct: 253 CDEYFWVPNFTKLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGDEWKRGSKKRTAI 312
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
L + + ++ G + + + + RY ++ +
Sbjct: 313 KFPTFDELRDG-GRVCPDGQWRY-VITMEDAIAGGFNLANIDKLRNRY--NTATFNMLYM 368
Query: 286 GQFPQQDIDSFIPLNIIEEA---LNREPCPDPY-------APLIMGCDIAEEGGDNTVVV 335
F F + +E ++ +P P+ G D A G + V+
Sbjct: 369 CVFVDSKDSVF-SFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVI 427
Query: 336 L------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + + W + R +I L +KY + +D G D ++
Sbjct: 428 VAPPMFAVEKFRVLKVIYWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGIFDNIQ- 486
Query: 390 LGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSF 445
R N + +L +K AD +E + L + + S++
Sbjct: 487 --------HFAMRVAVAIRYDLNTKNKLVLKAADVVESQRIEWDKNLKEIPASFMSVRRT 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + R + + + + P
Sbjct: 539 TTQSGNAMTFVADRSQDTGHAEAFWAITHALHNEP 573
>gi|226945807|ref|YP_002800880.1| phage P2 terminase ATPase subunit, gpP-like protein [Azotobacter
vinelandii DJ]
gi|226720734|gb|ACO79905.1| Phage P2 terminase ATPase subunit, gpP-like protein [Azotobacter
vinelandii DJ]
Length = 585
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 50/426 (11%), Positives = 103/426 (24%), Gaps = 37/426 (8%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSE--TQLKTTLWAEVSKWL-SLLPNKHWF 141
R IG T A L + A+ Q K + A + + L L
Sbjct: 164 SRQIGATYYFAREALIDALLTGRNQIFLSASKAQAHQFKNYMQAFIQEVLGRQLTGDPIV 223
Query: 142 EMQSLSL-HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
L Y S + + + + + H + + +
Sbjct: 224 LWNGAELHFLGTNYRTAQGRSGNFYFDEFFWVHGFDELNKVASGMALHKKWRKTYFSTPS 283
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
S L E + + D R + E
Sbjct: 284 SKGHPAYRWWTGERLNEGKPTAQHLTLDVGHDA----LAMGRLSEDKIWRQIVTILDAER 339
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI-----------PLNIIEEALNRE 309
+ R+ +++ + +F F + E+
Sbjct: 340 RGCDLFDLEELRFEYNAEQFANLLMCEFVDDGASIFPLAMLQPCQVDSWVEWAEDFKPFA 399
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGL 363
P + +G D AE G +VV+ + + D I +
Sbjct: 400 ARPFGDRQVWVGYDPAETGDSAGLVVVAPPLVPGGKFRVLERHQFRGMDFAAQAEFIRQV 459
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
+Y I +D G + ++ + L +K D
Sbjct: 460 TRRYWVTYIGLDTTGMGTGVAQLVRSFFPNLTTFSYSPE---------VKARLVMKAWDV 510
Query: 424 LEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ L + L ++ +++ + + ++ + R D + LM+ P
Sbjct: 511 VHNGRLEYDAGWTDLTSSMMAIRKTMTASGRQMTYVAGRTDATGHADLAWALMHALHNEP 570
Query: 481 PRSDMD 486
Sbjct: 571 LEGQTA 576
>gi|330830158|ref|YP_004393110.1| phage-related terminase [Aeromonas veronii B565]
gi|328805294|gb|AEB50493.1| Phage-related terminase [Aeromonas veronii B565]
Length = 588
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 63/480 (13%), Positives = 117/480 (24%), Gaps = 45/480 (9%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAIS---AGRGIGKTTLNA 95
G K P P Q +E ++ + + I R IG T A
Sbjct: 119 GPKKAPDRNVVEPEQ-QERLIERFESTMFDYQRVWYQAGQEYRIRDLLKSRQIGATYFFA 177
Query: 96 WLVLWLMSTRPGISVICLANSE--TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP- 152
+ + A+ K + + L L+
Sbjct: 178 FEAFIDALVTGRNQIFLSASKAQAHMFKQYIIQFAKEEGVELKGDPMVLPNGAHLYFLGT 237
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
I Y + + + + H + I+ +S +
Sbjct: 238 NARTAQSYHGNIYMDEYFWIHGFLEFRKVASGMAMHKKWRQTYISTPSSLSHPAYGFWSG 297
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF-HEGIIA 271
A + W++ V G F + + +
Sbjct: 298 ANFNRGKAKADRVEIDLSHANLSAGKLCA---DGQWRQIVTVEDAVRGGCNLFDLDQLRS 354
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMG 321
Y D R + +F F + ++ + Y P + +G
Sbjct: 355 EYSEDE--YRNLLMCEFMDDTESLFPLATLQRCMVDSWLVWEDYKPHTLRPLANRAVWIG 412
Query: 322 CDIAEEGGDNTV--------VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
D A+ G ++ +V + W D I + ++Y I
Sbjct: 413 YDPAKGGKGDSAGCAVLAPPLVPGGKFRVLERHRWQGMDFDAQAKSIRAICDRYNVAYIG 472
Query: 374 IDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS 433
ID G ++ V + N + + +K D + L S
Sbjct: 473 IDTTGIGEGVYQLVKQFYPAVTAIQYNP---------NVKMRMVMKAQDVMNKGRLEFDS 523
Query: 434 ---GLIQNLKSLKSFIVPNTGEL-AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
L Q S++ V +G+L E+ R D + M P
Sbjct: 524 GWTDLAQAFMSIRR-AVTQSGKLPTFEASRSDETSHADIAWATMQALLHEPLEGQTGTNS 582
>gi|16766035|ref|NP_461650.1| terminase-like protein [Enterobacteria phage Fels-2]
gi|169936048|ref|YP_001718747.1| P2 gpP-like protein [Enterobacteria phage Fels-2]
gi|16421269|gb|AAL21609.1| Fels-2 prophage protein [Enterobacteria phage Fels-2]
gi|312913743|dbj|BAJ37717.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
Length = 588
Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 55/459 (11%), Positives = 121/459 (26%), Gaps = 42/459 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E V + E K + R IG T A L +
Sbjct: 132 QIEKLEEVFHASMFDYQRHWFEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSK 167
A+ + + + +K + + + + + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVDVELKGDPMVLPNGAALYFLGTNARTAQSYHGNLYLD 251
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + + + + H + + +S T A +
Sbjct: 252 EYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDI 311
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ D R + + + R D + + +
Sbjct: 312 DLTHSNLARGLLC----PDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCE 367
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTVVV 335
F F + ++ + + +G D A+ + GD+ V
Sbjct: 368 FIDDLASVFPLSELQACMVDSWEVWTDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCV 427
Query: 336 LR-------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ I W D R + I L ++Y I ID+ G + ++
Sbjct: 428 VMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYENVK 487
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSF 445
V + N + L +K D + L + + Q+ +++
Sbjct: 488 AFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRA 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 539 TTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|200387487|ref|ZP_03214099.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199604585|gb|EDZ03130.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 588
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 55/459 (11%), Positives = 121/459 (26%), Gaps = 42/459 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E V + E K + R IG T A L +
Sbjct: 132 QIEKLEEVFHASMFDYQRHWFEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSK 167
A+ + + + +K + + + + + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDPMVLPNGAALYFLGTNARTAQSYHGNLYLD 251
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + + + + H + + +S T A +
Sbjct: 252 EYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDI 311
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ D R + + + R D + + +
Sbjct: 312 DLTHSNLARGLLC----PDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCE 367
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTVVV 335
F F + ++ + + +G D A+ + GD+ V
Sbjct: 368 FVDDLASVFPLSELQACMVDSWEVWTDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCV 427
Query: 336 LR-------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ I W D R + I L ++Y I ID+ G + ++
Sbjct: 428 VMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYENVK 487
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSF 445
V + N + L +K D + L + + Q+ +++
Sbjct: 488 AFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRA 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 539 TTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|262042498|ref|ZP_06015656.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259040136|gb|EEW41249.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 587
Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats.
Identities = 48/453 (10%), Positives = 111/453 (24%), Gaps = 42/453 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-E 117
M H + + R IG T A L + A+ +
Sbjct: 143 MFEYQRHWWEAGIKHRIRN----VLKSRQIGATYYFAREALMDALMTGRNQIFLSASKAQ 198
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQ--SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ E +K + + + + + Y + +
Sbjct: 199 AHVFKQYIIEFAKEVDVELKGDPMVLPNGATLYFLGTNARTAQSYHGNLYLDEYFWIPKF 258
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+ + + H + + +S T A +
Sbjct: 259 QELRKVASGMALHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADRVDIDLTHSALA 318
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
D R + + + R D + + +F
Sbjct: 319 AGLLCA----DGQFRQIVTVEDAVRGGCNLFDLDQLRLEYSPDEYQNLLMCEFIDDLASV 374
Query: 296 FIPLNIIEEALNREPCPDPY----------APLIMGCDIAE-EGGDNTVVVLRR------ 338
F ++ ++ + + + +G D A+ ++ +
Sbjct: 375 FPLADLQACMVDSWEVWEDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCVVIAPPTVP 434
Query: 339 --GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
I W D R I L ++Y I ID+ G + ++ V
Sbjct: 435 GGKFRILERHQWRGMDFRAQAEAIRKLTQQYNVTYIGIDSTGVGHGVYENVKGFFPAVRE 494
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
+ N + L +K D + L + + ++ +++ +
Sbjct: 495 FVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIARSFMAIRRATTASGNRP 545
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
E+ R + A D + M+ P + +
Sbjct: 546 TYEASRSEEASHADLAWATMHALFNEPLQGEAA 578
>gi|322832199|ref|YP_004212226.1| terminase, ATPase subunit [Rahnella sp. Y9602]
gi|321167400|gb|ADW73099.1| terminase, ATPase subunit [Rahnella sp. Y9602]
Length = 588
Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats.
Identities = 47/437 (10%), Positives = 109/437 (24%), Gaps = 42/437 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I R IG T A L + A S+TQ ++ E + L
Sbjct: 163 ILKSRQIGATFFFAREALLRALATGHNQIFLSA-SKTQAY--VFREYIIQFARLAGVELT 219
Query: 142 EMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ + + + + + + + +
Sbjct: 220 GDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQEHLRTT 279
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
+ ++ T G L + + + I+
Sbjct: 280 YFSTPSALTHGAYPFW-SGELFNKGRENPNDRIELDIGHHSLAKGRLCEDGQWRQIVTIE 338
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
G + + + + R +F F + +
Sbjct: 339 DALAGGCNLFNIDTLKQENSAED--FRNLFMCEFVDDQTSVFPFAELQRCMVESAEEWQD 396
Query: 315 YAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNN 358
++P + +G D + G V+ + W D
Sbjct: 397 FSPFAVRPFGYRAVWIGYDPSHTGDSAGCAVVAPPLVDGGKFRVLERHQWKGMDFAAQAK 456
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
I L ++Y + I +DA G + + +T++ +
Sbjct: 457 SIEELTKRYCVEYIGVDATGIGQGVFQLVRQFFPAAMEIRYSPET---------KTKMVL 507
Query: 419 KMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K D + L + + +++ + + E+ R + A D + +M+
Sbjct: 508 KAKDTITSGRLEYDTNHKDITSSFMAIRKTMTASGSRSTYEASRSEEASHADVAWAIMHA 567
Query: 476 FAENPPRSDMDFGRCPS 492
P + + G+ P+
Sbjct: 568 LLNEPLTAA-NGGQSPN 583
>gi|224582696|ref|YP_002636494.1| hypothetical protein SPC_0883 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467223|gb|ACN45053.1| putative phage protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
Length = 591
Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats.
Identities = 53/455 (11%), Positives = 121/455 (26%), Gaps = 47/455 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H ++ + K R IG T A+ +
Sbjct: 140 DAWADEHLFEYQKHLRRNIGQLVRNILK-----SRQIGATWYFAFEAFENAVMTGDPQIF 194
Query: 112 CLANSETQ------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ + L+ P + + + + S +
Sbjct: 195 LSASKVQAEYFRSYIVNIAEQYFGITLTGNPIRLSNGAELR--FLSTNKNTAQSYSGHLY 252
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + H+ + + ++ T + R I
Sbjct: 253 CDEYFWVPNFTKLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGDEWKRGSKKRTAI 312
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
L + + ++ G + + E + RY ++ +
Sbjct: 313 KFPTFDELRDG-GRVCPDGQWRY-VITMEDAIAGGFNLANIEKLRNRY--NTATFNMLYM 368
Query: 286 GQFPQQDIDSFIPLNIIEEA---LNREPCPDPY-------APLIMGCDIAEEGGDNTVVV 335
F F + +E ++ +P P+ G D A G + V+
Sbjct: 369 CVFVDSKDSVF-SFSDLEACGVEVDTWQDHNPDAARPFGDRPVWGGFDPARSGDLSCFVI 427
Query: 336 L------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + + W + R +I L +KY + +D G D ++
Sbjct: 428 VAPPMFAVEKFRVLKVIYWKGMNFRYQAKQIEQLFKKYNFTYLGVDVTGIGQGIFDNIQ- 486
Query: 390 LGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSF 445
R N + +L +K AD +E + L + + S++
Sbjct: 487 --------HFAMRVAVAIRYDLNTKNKLVLKAADVVESQRIEWDKNLKEIPASFMSVRRT 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + R + + + + P
Sbjct: 539 TTQSGNAMTFVADRSQDTGHAEAFWAITHALHNEP 573
>gi|58532911|ref|YP_195134.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-PM2]
gi|58331378|emb|CAF34164.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-PM2]
Length = 548
Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats.
Identities = 66/475 (13%), Positives = 135/475 (28%), Gaps = 79/475 (16%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
+ E ++ + F ++ L F +Q E +
Sbjct: 20 IDFTKEQVKEWI------KCANDPVYFTKNYVKIVSLDEGLVPFKMWD-FQEELIMKFHK 72
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ N P R GK+T +L + +++ LAN + + L
Sbjct: 73 NRFNIAKLP------------RQTGKSTTVVSYLLHYLIFNDNVNIGILANKASTARDLL 120
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
A ++ LP ++ +++ T +
Sbjct: 121 -ARLATAYENLP-----------KWIQQGVVVWNKGNIELENGSKILAAST-------SA 161
Query: 185 VGHHNTYGMAIINDEASGTP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYE 239
I DE + P D + +T + I T K +
Sbjct: 162 SAVRGMSFNIIFLDEFAFVPNHIADSFFASVYPTITSGKSTKVIIISTPQGMNHFYKMWV 221
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+ + ++ V G D + E I E +F D+ I
Sbjct: 222 DATNGRNGYTFHEVHWSQVPGRDEKWKEETIKNTSE--RQFTQEFECEFLGSV-DTLIAA 278
Query: 300 NIIEEALNREP-----------CPDPYAPLIMGCDIAEE-GGDNTVVVLRRG----PVIE 343
+ ++ + +P P + +M D++ GGD + ++ +
Sbjct: 279 SKLKALVFNDPIKRNKGLDIYEEPKEKSEYLMTVDVSRGIGGDYSAFIIFDITTVPYKVV 338
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLG 399
+ ++ N I+ L Y ++ + N+ G + LE + + G
Sbjct: 339 GKYRNNEIKPMLFPNIINDLARSYNNAWVLCEVNDIGDQVASILNYDLEYPNVLMCAMRG 398
Query: 400 QKRAVDLEFCRNRRTELHVKM------------ADWLEFASLI-NHSGLIQNLKS 441
+ + + +T+L VKM +E LI N +I L +
Sbjct: 399 RAGQLVGQGFSGSKTQLGVKMSITVKKVGCANLKTIVEEDKLIFNDYDIINELTT 453
>gi|326782137|ref|YP_004322538.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM1]
gi|310004344|gb|ADO98737.1| terminase DNA packaging enzyme large subunit [Prochlorococcus phage
P-HM1]
Length = 560
Score = 116 bits (291), Expect = 7e-24, Method: Composition-based stats.
Identities = 64/460 (13%), Positives = 124/460 (26%), Gaps = 66/460 (14%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
E+ + E Q+ + K F ++ + F +Q E +E
Sbjct: 18 EIQFSKEQIQEYL------KCKEDPVYFARNYIKIISLDEGIVPFDMWD-FQEELIESFH 70
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
+ N P R GK+T +L + ++V LAN + +
Sbjct: 71 ENRFNIAKLP------------RQTGKSTTCVSYLLHYILFNDNVNVGILANKLSTARDL 118
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
L + LP + + + + +
Sbjct: 119 L-GRLQLAYEQLPLWLQQGIVVYNKGSMELENGSKILA------------------ASTS 159
Query: 184 FVGHHNTYGMAIINDEASGTP----DVINLGILGFLTERN-ANRFWIMTSNPRRLSGKFY 238
I DE + P + + +T I T N K +
Sbjct: 160 ASAVRGMSFNIIFLDEFAFIPNHIAEQFFSSVYPTITSGTSTKVIIISTPNGMNHFYKLW 219
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
K + + ++ V G D + E IA E +F D+ I
Sbjct: 220 VDAQKGRNGYAWSEVHWSKVPGRDAKWKEQTIANTSE--RQFTQEFDCEFLGSV-DTLIT 276
Query: 299 LNIIEEALNREP-----------CPDPYAPLIMGCDIAEE-GGDNTVVVLRRGPVIEHLF 346
+ +P P I+ D++ D + V+
Sbjct: 277 AAKLRTLTYDDPLTTNGSLDVYENPVRDHDYIICVDVSRGLAQDYSAFVVIDITHAPWRL 336
Query: 347 DWSKTD----LRTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVL 398
D N I + Y ++ + N+ G LE + +
Sbjct: 337 VAKYRDHDVRPMVYPNIIFNVATNYNKAYVLTEVNDIGEAVSGSLFYDLEYENVLMCAMR 396
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
G+ + + + ++ VKM+ ++ N LI++
Sbjct: 397 GRAGQIVGQGFSGNKVQMGVKMSKTVKAQGCSNLKTLIED 436
>gi|51596097|ref|YP_070288.1| phage terminase subunit GpP [Yersinia pseudotuberculosis IP 32953]
gi|51589379|emb|CAH21001.1| terminase subunit [Enterobacteria phage 186] gb|AAC3414 [Yersinia
pseudotuberculosis IP 32953]
Length = 590
Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats.
Identities = 51/460 (11%), Positives = 121/460 (26%), Gaps = 38/460 (8%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS- 116
F E + + N + + + R IG T A L T + A+
Sbjct: 140 FHENIFDYQRNWFEAGLTHRIRNILKS-RQIGATFFFAREALLDAITTGRNQIFLSASKA 198
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQ--SLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ + + + ++ + + + + + + Y + +
Sbjct: 199 QAHVFKSYIIDFARMVDVDLKGDPMVLPNGARLFFLGTNVRTAQSYTGNLYLDEYFWIPK 258
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + H + + +S G L + S
Sbjct: 259 FQELRKVASGMSLHKKWRTTYFSTPSSLAHSAYPFW-SGELFNKGRRNKSDHIQLDLSHS 317
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ ++ G + + YG + + +F
Sbjct: 318 HLARGALCDDGQWRQIVTVEDALAGGCNLFDLNQLSLEYG--PSEYQNLLMCEFVDDQAS 375
Query: 295 SFIPLNIIEEALNREPCPDPYAPL----------IMGCDIAEEGGDNTV--------VVL 336
F + ++ + Y P +G D +E G ++ +V
Sbjct: 376 VFPFAELQACMVDSLEEWEDYNPYSLRPFGHRPVWIGYDPSEANGGDSAGCAVIAPPMVP 435
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ W D I L +KY + I IDA G +
Sbjct: 436 GGKFRVLERHQWKGMDFEAQAKHIEELTQKYCVEYIGIDATTVGQGVFQLVRQFFPAARE 495
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGEL 453
+ +T + +K + L + + Q+ +++ + +
Sbjct: 496 IKYTPE---------IKTAMVLKAKHTINNGRLEYDTGHTDITQSFMAIRKTMTASGKSS 546
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
+ R + A D + +M+ P + G P++
Sbjct: 547 TYVASRSEEASHADVAWAIMHALLNEPLTATY-GGHSPNF 585
>gi|320177430|gb|EFW52430.1| Phage terminase, ATPase subunit [Shigella dysenteriae CDC 74-1112]
Length = 588
Score = 116 bits (290), Expect = 9e-24, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 114/461 (24%), Gaps = 46/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E + + E K + R IG T A L +
Sbjct: 132 QIEKLEKNFHSSMFNYQRHWWEAGKTNRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
A+ Q EV L P + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDP--MVLPNGATLYFLGTNARTAQSYHGNLY 249
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S T +
Sbjct: 250 LDEYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRNKADKV 309
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
D R + + + R D + +
Sbjct: 310 DIDLSHSNLAPGLLCA----DGQYRQIVTVEDAVRGACNLFDLDQLRMEYSPDEYQNLLM 365
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE--EGGDNTV 333
+F F + ++ + + +G D A+ + GD+
Sbjct: 366 CEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAKGTQNGDSAG 425
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V+ I W D R I L E+Y I ID+ G +
Sbjct: 426 CVVVAPPAVPGGKFRILERHQWRGMDFRAQAYAIKKLTEQYNVTYIGIDSTGVGHGVYEN 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ V + N + L +K D + L + + Q+ +++
Sbjct: 486 VKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P + +
Sbjct: 537 RATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577
>gi|188532717|ref|YP_001906514.1| Terminase, ATPase subunit [Erwinia tasmaniensis Et1/99]
gi|188027759|emb|CAO95616.1| Terminase, ATPase subunit [Erwinia tasmaniensis Et1/99]
Length = 588
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/470 (11%), Positives = 123/470 (26%), Gaps = 42/470 (8%)
Query: 55 QLEFMEVVDAHCLNSVNNPN-PEVFKGAIS---AGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E ++ + + K A+ R IG T A L T +
Sbjct: 132 QIEKLQDIFHSTMFGYQRQWWEAGNKYAVRNLLKSRQIGATFFFAREALIDALTTGRNQI 191
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSK 167
A+ + + E ++ + + + + +
Sbjct: 192 FLSASKAQAHVFKQYIVEFAREADVDLKGDPMTLDNGACLYFLGTNARTAQSYHGNLYLD 251
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + ++ + + H + + +S T A +
Sbjct: 252 EYFWIPKFQELQKVASGMALHKKWRETYFSTPSSLTHSAYPFWSGAQFNRGRAKADRVDI 311
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ + ++ G D E + RY + + +
Sbjct: 312 --DLSHASLAAGRLCADGQFRQIVTVEDAVRGGCDLFDLEQLRTRYSPED--YQNLLMCV 367
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAE-EGGDNTVVVL 336
F F + + ++ D + + +G D A+ ++ +
Sbjct: 368 FMDDLASVFQLAMLQKCMVDSWEVWDDFEALALRPFGWKEVWIGYDPAKGTQNGDSAGCV 427
Query: 337 RR--------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
I W D R + I L ++Y I ID+ G + ++
Sbjct: 428 VIAPPAVPGGKFRILERHQWRGMDFRAQADAIKTLTQQYNVTYIGIDSTGVGLGVYENVK 487
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSF 445
V + + L +K D + L + + Q+ S++
Sbjct: 488 AFFPQVKEFVYNPT---------VKNALVLKAYDTMATGRLEFDASHLDIAQSFMSIRKA 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ E+ R + D + M+ A P + + Y
Sbjct: 539 TTSSGNRPTYETSRSEEVSHGDLAWATMHALANEPLQGQAAHTQNIVEMY 588
>gi|322831306|ref|YP_004211333.1| terminase, ATPase subunit [Rahnella sp. Y9602]
gi|321166507|gb|ADW72206.1| terminase, ATPase subunit [Rahnella sp. Y9602]
Length = 596
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/442 (10%), Positives = 107/442 (24%), Gaps = 45/442 (10%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I R IG T A L + A S+TQ ++ E + L
Sbjct: 171 ILKSRQIGATFFFAREALLRALATGHNQIFLSA-SKTQAY--VFREYIIQFARLAGVELT 227
Query: 142 EMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ + + + + + + + +
Sbjct: 228 GDPIVIGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQEHLRTT 287
Query: 195 IINDEASGTPDVINLGILGFLTER--NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ ++ T + N N + + +
Sbjct: 288 YFSTPSALTHGAYPFWSGELFNKGRENPNDRIELDIGHH--ALAKGRLCEDGQWRQIV-T 344
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
I+ G + + + + R +F F + +
Sbjct: 345 IEDALAGGCNLFNIDTLKQENSAED--FRNLFMCEFVDDQTSVFPFAELQRCMVESAEEW 402
Query: 313 DPYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTT 356
++P + +G D + G V+ + W D
Sbjct: 403 QDFSPFAMRPFGYRAVWIGYDPSHTGDSAGCAVVAPPLVDGGKFRVLERHQWKGMDFAAQ 462
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
I L ++Y + I +DA G + + +T++
Sbjct: 463 AKSIEELTKRYCVEYIGVDATGIGQGVFQLVRQFFPAAMEIRYSPET---------KTKM 513
Query: 417 HVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
+K D + L + + +++ + + E+ R + A D + +M
Sbjct: 514 VLKAKDTITSGRLEYDTNHKDITSSFMAIRKTMTASGSRSTYEASRSEEASHADVAWAIM 573
Query: 474 YTFAENPPRSDMDFGRCPSYQY 495
+ P + ++
Sbjct: 574 HALLNEPLTAASGGQSPNILEF 595
>gi|152973346|ref|YP_001337126.1| putative prophage large terminase protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|150958195|gb|ABR80225.1| putative prophage large terminase protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
Length = 589
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/471 (12%), Positives = 118/471 (25%), Gaps = 54/471 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F+ +QL + H + I R IG T + L
Sbjct: 142 FAESFEYQLRWHRAGLEHRIRD------------ILKSRQIGATFYFSREALLHALKTGH 189
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHC 160
+ A S+TQ ++ E + + + + +
Sbjct: 190 NQIFLSA-SKTQAY--VFREYIIQFARRVDVDLTGDPIVIGNNGAKLIFLGTNSNTAQSH 246
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + + + ++ A
Sbjct: 247 NGDLYVDEIFWIPNFQKLRKVSSGMASQSHLRSTYFSTPSTLAHGAYPFWSGELFNRGRA 306
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+ + + + I+ G E + +D
Sbjct: 307 SASERVDIDISHDALAAGVACPDGQWRQIV-TIEDALAGGCTLFNLEQLKRENSVDD--F 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP----------YAPLIMGCDIAEEGGD 330
R +F F ++ ++ + P+ +G D + G
Sbjct: 364 RNLFMCEFVDDKASVFPFEDLQRCMVDSLEEWEDFAPFADNPFGSRPVWVGYDPSHSGDS 423
Query: 331 NTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
VVL I W D T I L EKY + I IDA G
Sbjct: 424 AGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRQLTEKYNVEYIGIDATGLGIGVF 483
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKS 441
+ A D+ + +T + +K D + L + + + +
Sbjct: 484 QLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITTSFMA 534
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPS 492
++ + + E+ R + A D + M+ P + S
Sbjct: 535 IRKTMTSSGRSATYEASRTEEASHADVAWATMHALLNEP-LTAGSGQVTSS 584
>gi|253991767|ref|YP_003043123.1| putative phage terminase subunit [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211638542|emb|CAR67163.1| probable phage terminase subunit [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253783217|emb|CAQ86382.1| probable phage terminase subunit [Photorhabdus asymbiotica]
Length = 585
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/466 (12%), Positives = 126/466 (27%), Gaps = 44/466 (9%)
Query: 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR 105
E + ++ I R IG T A L T
Sbjct: 128 EQVKKLEDIFRSTLFDYQHDWYHAGLTHRIRN----ILKSRQIGATFFFAREALIDALTT 183
Query: 106 PGISVICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQ--SLSLHPAPWYSDVLHCSL 162
+ A+ + + E+++ +++ + +
Sbjct: 184 GRNQIFLSASKAQAHVFKQYILEMAREVNVELKGDPITLSNGATLYFLGTNARTAQSYHG 243
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ Y + + + + + H + + +S T G L R +
Sbjct: 244 NLYLDEYFWIPKFQELRKVASGMAMHKKWRQTYFSTPSSLTHSAYPYW-SGKLFNRGRAK 302
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
+ + + + ++ G + + + Y D +
Sbjct: 303 ANRIDIDISHQALASGLLCADGQWRQIV-TVEDAVRGGCNLFDIDQLRLEYSPDE--YQN 359
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPC-----------PDPYAPLIMGCDIAEE--GG 329
+ +F S L +++ + P Y P+ +G D A+ G
Sbjct: 360 LLMCEFMDDIE-SIFSLQLMQGCMVDSWEIWNDVQPLMLRPYGYNPVWIGYDPAKGGKNG 418
Query: 330 DNTVVVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
D+ V+ I W + R ++ I L E+Y + I ID+ G
Sbjct: 419 DSAGCVVVAPPLVPGGKFRILERHQWRGMNFRAQSDAIKRLTEQYNVEYIGIDSTGVGHG 478
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNL 439
++ V + + L +K D + L + + Q+
Sbjct: 479 VYQNVKEFFPSVREFVYNPS---------VKNALVLKAWDIINHRRLEFDAGQTDIAQSF 529
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDM 485
+++ + E+ R + A D + M+ P D
Sbjct: 530 MAIRRSTTASGNRPTYEASRSEEASHADLAWATMHALFNEPITGDT 575
>gi|29144574|ref|NP_807916.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|29140212|gb|AAO71776.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 588
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/461 (11%), Positives = 117/461 (25%), Gaps = 42/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E V + E K + R IG T A L +
Sbjct: 132 QIEKLEEVFHASMFDYQRHWFEAGKINRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSK 167
A+ + + + +K + + + + + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDPMVLPNGAALYFLGTNARTAQSYHGNLYLD 251
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + + + + H + + +S T A +
Sbjct: 252 EYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDI 311
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ D R + + + R D + + +
Sbjct: 312 DLTHSNLARGLLC----PDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCE 367
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE-EGGDNTVVVL 336
F F + ++ + + +G D A+ ++ +
Sbjct: 368 FIDDLASVFPLSELQACMVDSWEVWTDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCV 427
Query: 337 RR--------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
I W D R + I L ++Y I ID+ G ++
Sbjct: 428 VIAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYLNVK 487
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSF 445
V + N + L +K D + L + + Q+ +++
Sbjct: 488 DFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRA 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
+ E+ R + A D + M+ P + +
Sbjct: 539 TTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGEAA 579
>gi|326783799|ref|YP_004324193.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM7]
gi|310003811|gb|ADO98206.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-SSM7]
Length = 552
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 61/479 (12%), Positives = 126/479 (26%), Gaps = 74/479 (15%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
N + + F ++ L F +Q + +
Sbjct: 12 PNLKKANVAQNFTKKQVAEFLKCAQDPVYFAKNYVQIINLDEGLVPFEM-YDFQEKLVNN 70
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+ N P R GK+T +L +++ LAN +
Sbjct: 71 FHNNRFNICKMP------------RQSGKSTTVVSYLLHYAIFNDSVTIGILANKAQTAR 118
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
L + LP S+ +++K T
Sbjct: 119 DLL-GRLQIAYENLP-----------KWMQQGIIAWNKGSMELENKSKIIAAST------ 160
Query: 182 DTFVGHHNTYGMAIINDEASGT----PDVINLGILGFLTER-NANRFWIMTSNPRRLSGK 236
+ I DE + D + ++ + + T +
Sbjct: 161 -SASAVRGMSFNIIFLDEFAFVANHLADDFFSSVYPTISSGKSTKVIIVSTPRGMNHFYR 219
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ +++ + V G D ++ E I RVE +F D+
Sbjct: 220 LWHDAELGRNEYVTTDVHWSEVPGRDEAWKEQTIKNTSE--AQFRVEFECEFLGSV-DTL 276
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG----------------- 339
I + ++ + EP + + E+ + V + RG
Sbjct: 277 IAPSKLKTMVYDEPINTGKRGGEIYQNPIEKHNYSITVDVARGVEKDYSAFIVFDTTTFP 336
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVY 395
+ + + + I+ Y I+ + N+ G + LE +
Sbjct: 337 YKVVAKYRNNTIKPMLFPSVIAEFARAYNNAFILCEVNDIGDQIASILFYDLEYENVLMT 396
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS-------------LINHSGLIQNLKS 441
V G+ V + + +L VKM+ ++ +IN +I L +
Sbjct: 397 AVRGRAGQVLGQGFSGSKVQLGVKMSKTVKKIGALNLKTLIESDKLIINDYNIIAELTT 455
>gi|48697520|ref|YP_024878.1| gp33 TerL [Burkholderia phage BcepB1A]
gi|47717490|gb|AAT37736.1| gp33 TerL [Burkholderia phage BcepB1A]
Length = 532
Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/383 (14%), Positives = 111/383 (28%), Gaps = 59/383 (15%)
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH-HNTYGMAIINDEASGTPDVIN 208
P + S + T + R + DEA+ +
Sbjct: 156 PPEFRGGWNPHDHTHSSHMRVIIPDTGAVIRGEAGKNIGRGGRVSIQFVDEAAHLENAQA 215
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
+ T I S+ L+ F E + K + R D +++
Sbjct: 216 VDTALAATT----NCRIDISSVNGLNNPFAEK--RFSGRVKVKTMHWRDDPRKDDEWYKK 269
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIMGCDIAE 326
++ ++ V E+ + IPL I+ A++ + D+A+
Sbjct: 270 QKQKF--NALVVAQEIDIDYSASAEGVLIPLEWIDAAIDADVKLGLTVTGQRFSSLDVAD 327
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSKT--DLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
EG D R G +++ WS ++ T + GLV D++ G
Sbjct: 328 EGKDMNAFGSRLGIRMDYAESWSGKGSNIYGTTLRTIGLVIAQNGRDFQFDSDGLGVGVR 387
Query: 385 DYLEMLG--------YHVYRVLGQKRAVDLE----------------FCRNRRTELHVKM 420
E + + + + + E F +NR+ + + +
Sbjct: 388 GDAEAINALPERKAYPKIDAIAFRGSSSVREPDKQVPGAYKGVKNVDFFQNRKAQEYWAL 447
Query: 421 ADWLE--------------------FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRV 460
E + + + + L + TG++ I+ K
Sbjct: 448 RMRFEATYRAVVEKLEYDPDEIISISSRIPDLQKIRMEL-HQPLYKPSTTGKIMIQ-KTP 505
Query: 461 KGAKSTDYSDGLMYTFAENPPRS 483
G S +Y+D M +A +
Sbjct: 506 DGMVSPNYADMTMMLYAPQQTKR 528
>gi|291618711|ref|YP_003521453.1| P [Pantoea ananatis LMG 20103]
gi|291153741|gb|ADD78325.1| P [Pantoea ananatis LMG 20103]
Length = 588
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/470 (11%), Positives = 125/470 (26%), Gaps = 42/470 (8%)
Query: 55 QLEFMEVVDAHCLNSVNNPN-PEVFKGAIS---AGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E ++ + + K A+ R IG T A L T +
Sbjct: 132 QIEKLQDIFHSTMFGYQRQWWEAGNKYAVRNLLKSRQIGATFFFAREALLDALTTGRNQI 191
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSK 167
A+ + + E ++ + + + + +
Sbjct: 192 FLSASKAQAHVFKQYIVEFAREADVDLKGDPMTLANGACLYFLGTNARTAQSYHGNLYLD 251
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + ++ + + H + + +S T + A +
Sbjct: 252 EYFWIPKFQELQKVASGMALHKKWRETYFSTPSSLTHSAYPFWSGAQFNKGRAKADRVDI 311
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ + ++ G D E + RY + + +
Sbjct: 312 --DLSHASLAAGRLCADGQFRQIVTVEDAVRGGCDLFDLEQLRTRYSPED--YQNLLMCV 367
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEE--GGDNTVVV 335
F F + ++ D + + +G D A+ GD+ V
Sbjct: 368 FMDDLASVFQLAMLQRCMVDSWEVWDDFEALALRPFGWKEVWIGYDPAKGTKNGDSAGCV 427
Query: 336 L-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ I W D R + I L ++Y I ID+ G + ++
Sbjct: 428 VIAPPAVPGGKFRILERHQWRGMDFRAQADAIKSLTQQYNVTYIGIDSTGVGLGVYENVK 487
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSF 445
V + + L +K D + + + + Q+ S++
Sbjct: 488 AFFPQVKEFVYNPT---------VKNALVLKAYDTISSGRMEFDASHLDIAQSFMSIRKA 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ E+ R + D + M+ A P + + Y
Sbjct: 539 TTASGNRPTYETSRSEEVSHGDLAWATMHALANEPLQGQAAHTQNIVEMY 588
>gi|126173520|ref|YP_001049669.1| hypothetical protein Sbal_1282 [Shewanella baltica OS155]
gi|125996725|gb|ABN60800.1| protein of unknown function DUF264 [Shewanella baltica OS155]
Length = 602
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/475 (12%), Positives = 127/475 (26%), Gaps = 64/475 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+Q + E + N I R IG T A +
Sbjct: 159 FEYQKKMHENLHQRIRN-------------ILKSRQIGATYYFAGEAFEQAVLTGDPQIF 205
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--------------LHPAPWYSDV 157
A S +Q EV + + +FE++ +
Sbjct: 206 LSA-SRSQA------EVFRSYIIAIAHEFFEIELTGNPIVLNTAHGAAELRFLSTNSKTA 258
Query: 158 LHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE 217
+ Y + + + + + H+ + + ++ +
Sbjct: 259 QSYHGHVYVDEYFWIGKFDVLNKLASAMATHSNWRKTYFSTPSTKAHPAYPFWTGDHWRK 318
Query: 218 RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
R + ++ + + I+ G + + + Y D
Sbjct: 319 GKPEREEVEFPTFDQMRDG-GRVCPDKQWRY-VVTIEDALAGGCELFDIDELRDEYNGDD 376
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEG 328
F F ++ +E A ++ P P + +G D +
Sbjct: 377 --FANLFMCIFVDDADSVFKFSDLEKCMVEAARWQDYKPAAPRPFGNREVWLGYDPSRTR 434
Query: 329 GDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
+ T+VV+ + W + +I + KYR I +D GA
Sbjct: 435 DNATLVVVAPGEKKGEKFRVLEKHYWRGMNFSHHVAEIQKIYAKYRVTYIGVDTTGIGAG 494
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNL 439
D + L A + + +T L +KM D +E + + + +
Sbjct: 495 VFDSISTLYPR--------EATAIHYSVGSKTRLVLKMIDVIEGGRIEWDAGHKDIAMSC 546
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQ 494
S++ + + G + ++ R D + + P + + Q
Sbjct: 547 LSIRRTVTDSGGAITFKASRDNVTGHADVFFAIAHAVINEPLNYEHKRTSSWAMQ 601
>gi|161521371|ref|YP_001584798.1| hypothetical protein Bmul_4835 [Burkholderia multivorans ATCC
17616]
gi|189352462|ref|YP_001948089.1| ATPase subunit of bacteriophage terminase [Burkholderia multivorans
ATCC 17616]
gi|327198040|ref|YP_004306409.1| gp42 [Burkholderia phage KS5]
gi|160345421|gb|ABX18506.1| protein of unknown function DUF264 [Burkholderia multivorans ATCC
17616]
gi|189336484|dbj|BAG45553.1| ATPase subunit of bacteriophage terminase [Burkholderia multivorans
ATCC 17616]
gi|310657174|gb|ADP02289.1| gp42 [Burkholderia phage KS5]
Length = 588
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 59/459 (12%), Positives = 115/459 (25%), Gaps = 42/459 (9%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
F+E + + N E + + R IG T A L G + I L+ S+
Sbjct: 137 FLESIFDYQRNWYRAGFKERIR-NVLKSRQIGATWYFAREALLDAL-NTGRNQIFLSASK 194
Query: 118 TQLKTTLWAEVSKWLSLLPNKHW------FEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
Q + ++ + + + Y
Sbjct: 195 AQAH-VFRQYIVQFAKDAVDVELKGDPIVLPNGATLYFLGTNARTAQSYHGNLYFDEYFW 253
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ R + + + H+ + + +S D +
Sbjct: 254 VPRFQELRKVASGMAIHDQWRQTYFSTPSSLAHDAYPFWSGKLFNRGRPKDQHVSIDISH 313
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRT--VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ D R + + QF
Sbjct: 314 -AALAAGRSCQDGQWRQIVTVEDAVRGGCNSGARPLFNLDRLRLEYSPEEYANLLLCQFI 372
Query: 290 QQDIDSFIPLNIIEEAL-NREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL-- 336
S PL +++ + + D + P + +G D + G VV+
Sbjct: 373 DD-SLSVFPLTVLQPCMVDTWEVWDDFKPLYLRPFGDEEVWIGYDPSHTGDSAGCVVIAP 431
Query: 337 ----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
+ F W D +I L +YR I ID G +
Sbjct: 432 PKRPGGKFRVLERFQWHGLDFEAQAAQIEALTRRYRVTYIGIDTTGIGQGVYQLVTKFFP 491
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPN 449
+T L +K + + L + L + ++K I P+
Sbjct: 492 AATPFHYSVE---------IKTALVMKAQNVIRKGRLEFDAGWNDLAASFMAIKKTITPS 542
Query: 450 TGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
++ ++ R + A D + M+ A P
Sbjct: 543 GLQVTYKASRSEEASHGDLAWACMHALANEPLEGATATN 581
>gi|318604142|emb|CBY25640.1| phage terminase, ATPase subunit [Yersinia enterocolitica subsp.
palearctica Y11]
gi|318605359|emb|CBY26857.1| phage terminase, ATPase subunit [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 590
Score = 115 bits (286), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/475 (10%), Positives = 120/475 (25%), Gaps = 59/475 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS- 116
F E + + N + + + + R IG T A L T + A+
Sbjct: 140 FHENIFDYQRNWFDAGLQHRIRNILKS-RQIGATFFFAREALLDAITTGRNQIFLSASKA 198
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQ--SLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ + + + ++ + + + + + + Y + +
Sbjct: 199 QAHVFKSYIIDFARMVDVDLKGDPMVLPNGARLFFLGTNVRTAQSYTGNLYLDEYFWIPK 258
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + H + + +S +A FW +
Sbjct: 259 FQELRKVASGMSLHKKWRTTYFSTPSS--------------LAHSAYPFWSGELFNKGRR 304
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA-----------RYGLDSDVTRVE 283
K I + E +A +
Sbjct: 305 NKSDHIQLDLSHSHLARGAICADGQWRQIVTVEDALAGGCNLFDLNQLSLEYSPAEYQNL 364
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL----------IMGCDIAEEGGDNTV 333
+ +F F + ++ + Y P +G D +E G ++
Sbjct: 365 LMCEFVDDQASVFPFAELQACMVDSLEEWEDYNPYSLRPFGHRPVWIGYDPSEANGGDSA 424
Query: 334 --------VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
+V + W D I L +KY + I IDA G
Sbjct: 425 GCAVIAPPMVPGGKFRVLERHQWKGMDFEAQAKHIEELTQKYCVEYIGIDATTVGQGVFQ 484
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSL 442
+ + +T + +K + L + + Q+ ++
Sbjct: 485 LVRQFFPAAREIKYTPE---------IKTAMVLKAKHTINNGRLEYDTGHTDITQSFMAI 535
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEG 497
+ + + + R + A D + +M+ P + ++ G
Sbjct: 536 RKTMTASGKSSTYVASRSEEASHADVAWAIMHALLNEPLTATYGGHSPNFLEFYG 590
>gi|300723941|ref|YP_003713254.1| Terminase, ATPase subunit [Xenorhabdus nematophila ATCC 19061]
gi|297630471|emb|CBJ91136.1| Terminase, ATPase subunit (GpP) [Xenorhabdus nematophila ATCC
19061]
Length = 573
Score = 115 bits (286), Expect = 3e-23, Method: Composition-based stats.
Identities = 60/433 (13%), Positives = 116/433 (26%), Gaps = 46/433 (10%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I R IG T A L T V A+ + + +
Sbjct: 148 ILKSRQIGATYFFAREALMDALTTGRNQVFLSASKAQA--HVFKEYILDMAREVDVELRG 205
Query: 142 EMQ-----SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ + + Y + R + + + H +
Sbjct: 206 DPITLSNGATLYFLGTNARTAQSYHGNLYLDEYFWIPRFQELRKVASGMAIHKKWRQTYF 265
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-QIDT 255
+ +S T + A I E D W++ ++
Sbjct: 266 STPSSLTHSAYPFWSGKLINRGRAKADRIEIDISH---DVLAEGVLCGDDQWRQIVTLED 322
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC---- 311
G D + + +Y D + + +F S L +++ +
Sbjct: 323 AIQGGCDLFDIDRLRRQYSPDE--YQNLLMCEFMDDIE-SIFSLQLMQGCMVDSWEIWHD 379
Query: 312 -------PDPYAPLIMGCDIAEE--GGDNTVVVL-------RRGPVIEHLFDWSKTDLRT 355
P Y P+ +G D A+ GD+ V+ I W D R
Sbjct: 380 VQPLMLRPYGYHPVWIGYDPAKGGENGDSAGCVVIAPPQVPGGKFRILERHQWRGMDFRA 439
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
++ I L E+Y + I ID+ G ++ + +
Sbjct: 440 QSDAIRQLTEQYNVEYIGIDSTGIGHGVYQNVKEFFPAAREFVYNPS---------VKNA 490
Query: 416 LHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
L +K D + L + + Q+ +++ + E+ R + A D +
Sbjct: 491 LVLKAWDIIHHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWAT 550
Query: 473 MYTFAENPPRSDM 485
M+ P D
Sbjct: 551 MHALFNEPITGDT 563
>gi|291336011|gb|ADD95601.1| large terminase protein [uncultured phage MedDCM-OCT-S09-C7]
Length = 526
Score = 115 bits (286), Expect = 3e-23, Method: Composition-based stats.
Identities = 63/454 (13%), Positives = 132/454 (29%), Gaps = 60/454 (13%)
Query: 11 TEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSV 70
T+Q+ + +F+ ++ + F R +Q + +E +++ N
Sbjct: 25 TDQE-MQEYV--KCSQDPCHFIENYTQIISLDEGMVPFKL-RGYQDKLIEHYNSNRFN-- 78
Query: 71 NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK 130
+ A R GK+ + +LW + P ++V LAN + + A +
Sbjct: 79 ----------IVLASRQSGKSITSCAYLLWFLLFNPEVTVAVLANKGAIAREMI-ARMVT 127
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
L +P ++ L+ + +D + +
Sbjct: 128 MLESVPFFLQPGVKILNKGSIEFANDSKVVA------------------AATSSSSIRGL 169
Query: 191 YGMAIINDEASGTPDV--INLGILGFLTER-NANRFWIMTSNP-RRLSGKFYEIFNKPLD 246
+ DE + D +T ++ T+N + K YE
Sbjct: 170 SINLLYLDEFAFVDDAETFYTATYPVVTSGKDSKVIITSTANGVGNMFYKIYESAVHDQS 229
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP-------- 298
++K F I+ V G D + + IA E F
Sbjct: 230 EYKHFLINWFDVPGRDEEWKKETIANTSE--AQFEQEYGNSFLGTGNTLINSNTLLGLMS 287
Query: 299 --LNIIEEALNREPCPDPYAPLIMGCDIAEEG--GDNTVVVLRRGPVIEHLFDWSK---T 351
+ ++ + P I D+++ +T ++ +
Sbjct: 288 KEPDWNKDGVKVYEKPKEGHTYITTVDVSKGRGIDYSTFTIMDISVKPFRQVCTYRDNMI 347
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAVDLE--F 408
+ I+ + Y +II+ N G L + Y V G +A D+
Sbjct: 348 SPMLFPDLIAKYTKPYNESLVIIENNAEGGMVATQLHYDIEYPNVFVQGMSKAEDIGVTM 407
Query: 409 CRNRRTELHVKMADWLEFASLINHSGL-IQNLKS 441
+ + + + LE + I L +
Sbjct: 408 TKRIKRIGCSTLKELLEENRMTICDRDGITELMT 441
>gi|238760573|ref|ZP_04621704.1| Terminase, ATPase subunit [Yersinia aldovae ATCC 35236]
gi|238701192|gb|EEP93778.1| Terminase, ATPase subunit [Yersinia aldovae ATCC 35236]
Length = 590
Score = 115 bits (286), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/464 (10%), Positives = 119/464 (25%), Gaps = 37/464 (7%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS- 116
F E + + N + + + R IG T A L + A+
Sbjct: 140 FHENIFDYQRNWFEAGLTHRIRNILKS-RQIGATFFFAREALLDAIVTGRNQIFLSASKA 198
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQ--SLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ + + + ++ + + + + + + Y + +
Sbjct: 199 QAHVFKSYIIDFARMVDVDLKGDPMVLPNGARLFFLGTNVRTAQSYTGNLYLDEYFWIPK 258
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + H + + +S G L + S
Sbjct: 259 FQELRKVASGMSLHKKWRTTYFSTPSSLAHSAYPFW-SGELFNKGRRNKSDHIQLDLSHS 317
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ ++ G + + YG + + +F
Sbjct: 318 HLARGALCADGQWRQIVTVEDALAGGCNLFDLNQLSLEYG--PSEYQNLLMCEFVDDQAS 375
Query: 295 SFIPLNIIEEALNREPCPDPYAPL----------IMGCDIAEEGGDNTV--------VVL 336
F + ++ + Y P +G D +E G ++ +V
Sbjct: 376 VFPFKELQACMVDSLEEWEDYNPYSLRPFGYRPVWIGYDPSEANGGDSAGCAVIAPPMVP 435
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ W D I L +KY + I IDA G +
Sbjct: 436 GGKFRVLERHQWKGMDFEAQAKHIEELTQKYCVEYIGIDATTVGQGVFQLVRQFFPAARE 495
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGEL 453
+ +T + +K + L + + Q+ +++ + +
Sbjct: 496 IKYTPE---------IKTAMVLKAKHTINNGRLEYDTGHTDITQSFMAIRKTMTASGKSS 546
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEG 497
+ R + A D + +M+ P + ++ G
Sbjct: 547 TYVASRSEEASHADVAWAIMHALLNEPLTATYGGHSPNFLEFYG 590
>gi|210062534|gb|ACJ06274.1| probable terminase subunit [Photorhabdus luminescens]
Length = 585
Score = 115 bits (286), Expect = 3e-23, Method: Composition-based stats.
Identities = 55/430 (12%), Positives = 114/430 (26%), Gaps = 40/430 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-ETQLKTTLWAEVSKWLSLLPNKHW 140
I R IG T A L T + A+ + + E+++ +
Sbjct: 160 ILKSRQIGATFFFAREALIDALTTGRNQIFLSASKAQAHVFKQYILEMAREVDAELKGDP 219
Query: 141 FEMQ--SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ + + Y + + + + + H + +
Sbjct: 220 ITLNNGATLYFLGTNARTAQSYHGNLYLDEYFWIPKFQELRKVASGMAMHKKWRQTYFST 279
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
+S T A I +S + + D R +
Sbjct: 280 PSSLTHGAYPYWSGKLFNRGRAKANRIDI----DISHQALASGLRCADGQWRQIVTVEDA 335
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY--- 315
+ + R D + + +F S L +++ +
Sbjct: 336 VRGGCNLFDIDQLRLEYSPDEYQNLLMCEFMDDIE-SIFSLQLMQGCMVDSWEIWDDVQP 394
Query: 316 --------APLIMGCDIA---EEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNN 358
P+ +G D A E G VV+ I W + R ++
Sbjct: 395 LMLRPYGYHPVWIGYDPAKGGENGDSAGCVVVAPPRVPGDKFRILERHQWRGMNFRAQSD 454
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
I L E+Y + I ID+ G ++ V + + L +
Sbjct: 455 AIKRLTEQYNVEYIGIDSTGVGHGVYQNVKEFFPSVREFVYNPA---------VKNALVL 505
Query: 419 KMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K D + L + + Q+ +++ + ++ R + A D + M+
Sbjct: 506 KAWDIINHRRLEFDAGQTDIAQSFMAIRRSTTASGNRPTYQASRSEEASHADLAWATMHA 565
Query: 476 FAENPPRSDM 485
P D
Sbjct: 566 LFNEPITGDT 575
>gi|56414686|ref|YP_151761.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197363613|ref|YP_002143250.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|56128943|gb|AAV78449.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095090|emb|CAR60636.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 588
Score = 115 bits (286), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/461 (11%), Positives = 115/461 (24%), Gaps = 42/461 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E V + E K + R IG T A L +
Sbjct: 132 QIEKLEEVFHASMFDYQRHWFEAGKINRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 191
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSK 167
A+ + + + +K + + + + + +
Sbjct: 192 FLSASKAQAHVFKQYIIDFAKEVEVELKGDPMVLPNGAALYFLGTNARTAQSYHGNLYLD 251
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + + + + H + + +S T A +
Sbjct: 252 EYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDI 311
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ D R + + + R D + + +
Sbjct: 312 DLTHSNLARGLLC----PDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCE 367
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCD-IAEEGGDNTVVVL 336
F F + ++ + + +G D ++ +
Sbjct: 368 FIDDLASVFPLSELQACMVDSWEVWTDFQALALRPFGWREVWIGYDSAKGTQNGDSAGCV 427
Query: 337 RR--------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
I W D R + I L ++Y I ID+ G ++
Sbjct: 428 VIAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYLNVK 487
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSF 445
V + N + L +K D + L + + Q+ +++
Sbjct: 488 DFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRA 538
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
+ E+ R + A D + M+ P + +
Sbjct: 539 TTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGEAA 579
>gi|260557981|ref|ZP_05830193.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
gi|260408491|gb|EEX01797.1| phage terminase large subunit [Acinetobacter baumannii ATCC 19606]
Length = 529
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 27/238 (11%)
Query: 275 LDSDVTRVEVCGQFPQQDID---SFIPLNIIEEALNREPCPDPYAPLI--------MGCD 323
L + + G F D IP +E A R + L G D
Sbjct: 280 LPEPLRSQMLYGDFGAGIEDDPWQVIPTEWVEAAQARWKPLEDMRILHRGDFKMDSYGLD 339
Query: 324 IAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR-PDAIIIDANNTGAR 382
+A GGDNT+ R G ++ D S V R I +D GA
Sbjct: 340 VARGGGDNTIGFARYGYWYDNPNVLEGKDSPDGPTSASFAVSHVRDHAPIHVDVIGVGAS 399
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEF-----CRNRRTELHVKMADWLE-----FASLINH 432
T D+L+ G HV V + A + N R++L + + L+ +L
Sbjct: 400 TYDFLKQSGIHVVPVDVRNAATAFDRSGQLSFYNLRSQLWWQFREALDPAYGSTVALPPE 459
Query: 433 SGLIQNLKSLKSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSDMDF 487
L+ +L + + + ++ +ES+ + +S DY ++ + P R M
Sbjct: 460 PKLLADLTAPRWGL--QGTKIKVESREEIIKRIGRSPDYGSAIINAQIDTPKRHIMQT 515
>gi|167623253|ref|YP_001673547.1| hypothetical protein Shal_1320 [Shewanella halifaxensis HAW-EB4]
gi|167353275|gb|ABZ75888.1| protein of unknown function DUF264 [Shewanella halifaxensis
HAW-EB4]
Length = 617
Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/425 (11%), Positives = 116/425 (27%), Gaps = 39/425 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN-SETQLKTTLWAEVSKWL------SL 134
I R IG T A + A+ S+ ++ T ++++
Sbjct: 191 ILKSRQIGATYYFAGEAFEQAVLTGDPQIFLSASRSQAEVFRTYIVQIAQQFFEIELTGN 250
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H + + + Y + + + + + H +
Sbjct: 251 PIVLHTAHGDAELRFLSTNSKTAQSYHGHVYVDEYFWIGKFDVLNKLASAMATHKNWRKT 310
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
+ ++ + ++R + + + + I+
Sbjct: 311 YFSTPSTKAHPAYSFWTGDHWRRGMSDREEVEFPTFDAMRDR-GRFCPDKQWRY-VVTIE 368
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI----IEEALNREP 310
G E + Y D + F F ++ +E A ++
Sbjct: 369 DALAGGCGLFDIEELRDEYNDDD--FKNLFMCIFVDDADSVFKFSDLEKCMVESARWQDH 426
Query: 311 CPDPYAP-----LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNK 359
P P + +G D + + T+VV+ + W + ++
Sbjct: 427 KPKEQRPFGNREVWLGYDPSRTRDNATLVVIAPGEKKGEKFRVLEKHYWRGLNFSHHVSE 486
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY-HVYRVLGQKRAVDLEFCRNRRTELHV 418
I + +YR I +D GA D + L + + +T L +
Sbjct: 487 IQKVYARYRVTYIGVDTTGIGAGVFDSISTLFPREATAIHYSVSS---------KTRLVL 537
Query: 419 KMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
KM D +E + + + + S++ G + ++ R D + +
Sbjct: 538 KMIDVVESGRIEWDASHKDIAMSCLSIRKTTTDTGGAITFKASRDNVTGHADVFFAIAHA 597
Query: 476 FAENP 480
P
Sbjct: 598 VINEP 602
>gi|121606179|ref|YP_983508.1| hypothetical protein Pnap_3289 [Polaromonas naphthalenivorans CJ2]
gi|120595148|gb|ABM38587.1| protein of unknown function DUF264 [Polaromonas naphthalenivorans
CJ2]
Length = 596
Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/458 (11%), Positives = 105/458 (22%), Gaps = 39/458 (8%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E + I R IG T A L + A+
Sbjct: 147 EVQAAFRDSLFGHQKVWLRNGERTRMILKSRQIGATWYFAREALCDALATGRNQIFLSAS 206
Query: 116 S-ETQLKTTLWAEVSKW---LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + + + ++L + + + +
Sbjct: 207 KAQAHIFKQYIQQFANEACGVTLSGDPIVLDNGAELHFLGTNARTAQGYHGNFYFDEFFW 266
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR-FWIMTSNP 230
R + + + H + + +S + L +R +
Sbjct: 267 THRFEELNKVASGMAMHKQWRKTYFSTPSSIQHEAYALWSGARFNKRRPKNERIALDLTH 326
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
RL+G F I G D + + Y + + F
Sbjct: 327 ERLAGGFTGEDRVWR---NIVNILDAAAGGCDLFDIDELRLEYSTEE--FENLLMCGFID 381
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL---- 336
F + + ++ + Y P + +G D + G VVL
Sbjct: 382 DTQSVFPMAELQKCMVDSWVDWEDYKPFTARPYGYRAVWVGYDPSHTGDTAGCVVLAAPL 441
Query: 337 --RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
+ W D I + ++ I ID G +
Sbjct: 442 TPGGKFRVLERHQWRGLDFEAQAEAIRQITLRFNVQHIGIDTTGLGQGVYQLVSKFFPAA 501
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L +++ + +
Sbjct: 502 QSINYSVE---------VKTRLVLKAKSVISKGRLEFDAGAVDLAHAFLAIRRALTASGR 552
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
+ ES R D + M+ P R
Sbjct: 553 NVTFESGRSDDTGHADLAWACMHALDNEPLEGQTSANR 590
>gi|167753387|ref|ZP_02425514.1| hypothetical protein ALIPUT_01661 [Alistipes putredinis DSM 17216]
gi|167658012|gb|EDS02142.1| hypothetical protein ALIPUT_01661 [Alistipes putredinis DSM 17216]
Length = 472
Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/406 (12%), Positives = 114/406 (28%), Gaps = 37/406 (9%)
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKT---TLWAEVSKWLSLLPNKHWFEMQSL 146
K+ ++++ PG +L+ + +V + +K +
Sbjct: 64 KSWTGCTWLVFMSLCYPGTKWFIGREELKRLRESTLITFFKVCTQYGIKRDKDFKYNGQD 123
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
S + L E D
Sbjct: 124 HYIQFANNSRIDLLDLRYLPSDPLYERYGSVEYTGGWIE--EGGEVNFGAYDTLKTRIGR 181
Query: 207 INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID----TRTVEGID 262
G L ++ NP++ QI + I+
Sbjct: 182 HLNDKYGILR------KLFISCNPKKNWMHSTFYKPAKAGTLPGHQIYLAALVQDNPFIE 235
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQF-PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
+ E + + D + G + + ++ + I E +
Sbjct: 236 KDYIEALKSTT--DKVKKERLLKGNWDYDDNPNALCSYDNIREIFY-PKIHTRTGIKYIT 292
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII--DANNT 379
DIA G D +++ G I + ++ I L K+R I D +
Sbjct: 293 ADIARFGSDRARILVWDGWAIIEQVSFDRSATTEIAACIESLAAKHRIPRYRIIADEDGV 352
Query: 380 GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH------- 432
G D + + + ++ E N +T+ K+A+ + ++
Sbjct: 353 GGGVVDMCR-----ISGFVNNSQCLNGENFSNLQTQCGYKLANKINSFAISFDCELSDGQ 407
Query: 433 -SGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
+ + L+ L+++ V N +L ++ K + +S D+ D L+
Sbjct: 408 KDEITEELEQLQTWNVDNDRKLFLKPKDEIKQDIGRSPDWRDALLM 453
>gi|307129625|ref|YP_003881641.1| hypothetical protein Dda3937_02574 [Dickeya dadantii 3937]
gi|306527154|gb|ADM97084.1| Possible phage protein [Dickeya dadantii 3937]
Length = 591
Score = 114 bits (284), Expect = 5e-23, Method: Composition-based stats.
Identities = 57/459 (12%), Positives = 128/459 (27%), Gaps = 55/459 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H ++ + K R IG T A+ +
Sbjct: 141 DAWADEHLFGYQKHLRTNLGQQVRNILK-----SRQIGATWYFAFEAFENAVLTGEPQIF 195
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHC 160
A S Q EV + + + +F++ + +
Sbjct: 196 LSA-SRAQA------EVFRSYIVNIAQQYFDITLTGNPIRLSNGAELRFLSTNKNTAQSY 248
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
S + Y + + + H+ + + ++ T N
Sbjct: 249 SGHLYCDEYFWVPNFARLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGEEWKRGNK 308
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
R + L + + ++ G + + E + RY +D+
Sbjct: 309 KRAGVNFPGFDELRDG-GRLCPDGQWRY-VITMEDAIRGGFNLASLEKLRNRYNVDT--F 364
Query: 281 RVEVCGQFPQQDIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDN 331
+ F F ++ ++ A ++ P P + G D A G +
Sbjct: 365 NMLYMCVFVDNKDAVFSFDDLERCGVDPATWQDHDPTAPRPFGNREVWGGYDPARSGDLS 424
Query: 332 TVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
T+V++ + + +W + R N+I L ++Y I ID GA +
Sbjct: 425 TLVIVAPPIYDGEKFRVLLVVNWHGMNFRYQANQIKKLFQRYHFTYIGIDVTGIGAGVFE 484
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSG---LIQNLKS 441
++ R + L +K AD +E + + + +
Sbjct: 485 NIQ---------HFAMRQATAIRYGVETKNRLVMKAADVVESQRIEWDQDEKAIPASFMA 535
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
++ + + + R + + + P
Sbjct: 536 IRRTTTASGNAMTFIADRSAETGHAEAFFAIAHALDNEP 574
>gi|212709268|ref|ZP_03317396.1| hypothetical protein PROVALCAL_00303 [Providencia alcalifaciens DSM
30120]
gi|212688180|gb|EEB47708.1| hypothetical protein PROVALCAL_00303 [Providencia alcalifaciens DSM
30120]
Length = 585
Score = 114 bits (284), Expect = 5e-23, Method: Composition-based stats.
Identities = 57/457 (12%), Positives = 113/457 (24%), Gaps = 44/457 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E + + I R IG T A T + A+
Sbjct: 134 EEIFRQNMFGYQKVWYSAGHKHRIRNILKSRQIGATYFFAREAFMDALTTGRNQIFLSAS 193
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHW-----FEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ + + + Y
Sbjct: 194 KAQA--HVFKGYIIDMAREVDVDLKGDPIVLPNGATLYFLGTNARTAQSYHGNLYLDEYF 251
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ + + + + H + + +S T G L R + + +
Sbjct: 252 WIPKFQELRKVASGMAMHKKWRQTYFSTPSSLTHSAYPFW-SGKLFNRGRRKAEHVDVDV 310
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ + ++ G D E + Y D + +F
Sbjct: 311 SHQALVNGMVCADGQWRQIV-TVEDAIRGGCDLFEIEQLSLEYSPDE--FENLLMCEFVD 367
Query: 291 QDIDSFIPLNIIEEALNREPC-----------PDPYAPLIMGCDIAE--EGGDNTVVVL- 336
S L ++++ + P Y P+ +G D A+ + GD+ V+
Sbjct: 368 DIA-SIFNLQLMQKCMVDSWEVWNDVQPLMVRPYAYHPVWIGYDPAKGTQNGDSAGCVVV 426
Query: 337 ------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
I W D R N I L E+Y I ID+ G +
Sbjct: 427 APPLRAGDKFRILEHHQWRGMDFRAQANAIKELTERYNVQYIGIDSTGIGHGVLQNVRDF 486
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIV 447
+ + L +K D + L + + Q+ +++
Sbjct: 487 FPAAKEFVYNPA---------LKNALVLKAYDVISHDRLEYDAGCNDITQSFMAIRRATT 537
Query: 448 PNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ E+ R + A D + M+ P +
Sbjct: 538 ASGNRPTYEADRSEEASHADLAWATMHALYNEPITGE 574
>gi|238027628|ref|YP_002911859.1| Bbp25 [Burkholderia glumae BGR1]
gi|237876822|gb|ACR29155.1| Bbp25 [Burkholderia glumae BGR1]
Length = 486
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 21/217 (9%)
Query: 290 QQDIDSFIPLNIIEEALNREPCPD-PYAPLI-MGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
+ D IP + A R P P+ +G D+A G D ++ R G +
Sbjct: 273 EDDPWQVIPSEWVRLAQERWRARSRPRIPMTALGVDVARGGQDQSIYTPRYGNWFDEQVC 332
Query: 348 WSKTDLRTTNNKISGLVE-KYRPDAIIIDANNTGARTCDYLEM-LGYHVYRVLGQKRAVD 405
+ + + +D GA D + +G ++ + G R +
Sbjct: 333 QPGLATPDGFVVAQQVFNLREPSTLVNLDVVGVGASPFDIIHQVIGDKIWGISGAARTDE 392
Query: 406 LEF-----CRNRRTELHVKMADWL-----EFASLINHSGLIQNLKSLKSFIVPNTGELAI 455
L+ N R L +M + L E ++ L +L + + P + +
Sbjct: 393 LDMSGQFGFVNLRALLWWRMREALDPINGEDLAIPPDPALAADLCAPRYRKAPRG--ILV 450
Query: 456 ESK---RVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
ESK + + +S D D +Y FG
Sbjct: 451 ESKEEIKKRIGRSPDRGDSAVYAL--PERSGGFAFGS 485
>gi|226953564|ref|ZP_03824028.1| possible ATPase terminase subunit [Acinetobacter sp. ATCC 27244]
gi|226835689|gb|EEH68072.1| possible ATPase terminase subunit [Acinetobacter sp. ATCC 27244]
Length = 374
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 44/369 (11%), Positives = 91/369 (24%), Gaps = 36/369 (9%)
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
Y + E+ + + H+ + + +S T +
Sbjct: 21 FLGTNYRTAQGPHGNLYFDEIFWTYGFDELEKVASGMATHDKWRKTYFSTPSSITHEAYK 80
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
+ + +D QI T
Sbjct: 81 FWTGTRFNKGKPKDQQFKI-----DLSHKALKHGRVCEDLMWRQIVTVEDAKEGGCDLFN 135
Query: 269 IIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY-----------A 316
I S +F F PL++++ +
Sbjct: 136 IERLKFEYSPEDFANLFMCEFVDDGQSMF-PLSMLQICMVDTLEIWNDFKIWHNRPFSNK 194
Query: 317 PLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
P+ +G D A G + +VV+ + + D +I + +Y
Sbjct: 195 PVWIGYDPALTGDNAGLVVVAPPAVAGGKFRVLEKHQFKGDDFSEQAERIRAITLRYNVT 254
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
I ID G + + + +++L K D + L
Sbjct: 255 YIGIDTTGMGYGVAELVRAFFPALTTFNYSPE---------VKSQLVYKTLDVIRNGRLE 305
Query: 431 NHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
+ L Q+L S+K + + ++ + R + D + LM+ P +
Sbjct: 306 FDAGDKDLAQSLMSIKKTLTSSQKQITFSAGRSEETGHADLAWALMHAIYNEPLAGITET 365
Query: 488 GRCPSYQYE 496
Y
Sbjct: 366 NTSMVEIYS 374
>gi|258544092|ref|ZP_05704326.1| probable terminase (atpase subunit) related protein
[Cardiobacterium hominis ATCC 15826]
gi|258520720|gb|EEV89579.1| probable terminase (atpase subunit) related protein
[Cardiobacterium hominis ATCC 15826]
Length = 562
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 58/450 (12%), Positives = 125/450 (27%), Gaps = 40/450 (8%)
Query: 56 LEFMEV-VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
+ H + + + + + R IG T A L G + I ++
Sbjct: 109 KRAFRERMYPHQMAWYEHSKKYEMRQYVKS-RQIGATYYFAQEALLTAL-ETGKNQIFIS 166
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK-----HY 169
S++Q ++ +L + E LS ++ + S Y
Sbjct: 167 ASKSQAHIFRSNIIAFVDEVLGVQLKGEHIKLSPGTTLYFLGTNSNTAQSYSGDLYIDEY 226
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ + + + H+ + + ++ T + L + I
Sbjct: 227 FWIPQFKKIQHVAAGMTVHDDRRITYFSTPSTVTHEAYPLWTGAEFNKGRPKSEHIDLDV 286
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ + I+ G D E + ++ + QF
Sbjct: 287 SHKALKDGRLCEDGYFRQ--VITIEDAINSGFDRVTMEKLRIKFPPG--QFENLLMCQFV 342
Query: 290 QQDIDSFIPLNIIEEALNRE----------PCPDPYAPLIMGCDIAEEGGDNTVVVL--- 336
F + ++ P P AP+ +G D + D ++VV+
Sbjct: 343 NDTDSIFKMAELQRCMVDAWTLWKDYTPLAPRPLDDAPVWIGYDPSRSQDDASLVVIAPP 402
Query: 337 -RRGPVIEHLF--DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH 393
G V + ++ D KI Y I IDA G D +
Sbjct: 403 RVEGGVFRIVDKQSFNGLDFDGQAQKIREFCAIYNVANIAIDATGIGQAVYDLVRQ---- 458
Query: 394 VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNT 450
RA + + + E+ +K + L + + ++ +
Sbjct: 459 -----FYPRARKIIYTVEAKNEMVLKAKQLIHHGRLQWDAGWTDIAHAFLTIHQAQTGSG 513
Query: 451 GELAIESKRVKGAKSTDYSDGLMYTFAENP 480
++ ++ R D + M+ +P
Sbjct: 514 RQVTYKANRTAATGHADLAWATMHALINDP 543
>gi|120599697|ref|YP_964271.1| hypothetical protein Sputw3181_2900 [Shewanella sp. W3-18-1]
gi|120559790|gb|ABM25717.1| protein of unknown function DUF264 [Shewanella sp. W3-18-1]
Length = 602
Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats.
Identities = 57/475 (12%), Positives = 125/475 (26%), Gaps = 64/475 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+Q + E + N I R IG T A +
Sbjct: 159 FEYQKKMHENLHQRIRN-------------ILKSRQIGATYYFAGEAFEQAVLTGDPQIF 205
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--------------LHPAPWYSDV 157
A S +Q EV + + +FE++ +
Sbjct: 206 LSA-SRSQA------EVFRSYIIAIAHEFFEIELTGNPIVLNTAHGAAELRFLSTNSKTA 258
Query: 158 LHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE 217
+ Y + + + + + H+ + + ++ +
Sbjct: 259 QSYHGHVYVDEYFWIGKFDVLNKLASAMATHSNWRKTYFSTPSTKAHPAYPFWTGDHWRK 318
Query: 218 RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
R I ++ + + I+ G + + + Y D
Sbjct: 319 GKPEREEIEFPTFDQMRDG-GRVCPDKQWRY-VVTIEDALAGGCELFDIDELRDEYNGDD 376
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEG 328
F F ++ +E A ++ P P + +G D +
Sbjct: 377 --FANLFMCIFVDDADSVFKFSDLEKCMVEAARWQDYKPAAPRPFGNREVWLGYDPSRTR 434
Query: 329 GDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
+ + V+ + W + +I + KYR I +D GA
Sbjct: 435 DNAVLAVVAPGEKKGEKFRVLERHRWRGMNFAHHVAEIQKIYAKYRVTYIGVDTTGIGAG 494
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNL 439
D + L A + + +T L +KM D +E + + + +
Sbjct: 495 VFDSISTLYPR--------EATAIHYSVGSKTRLVLKMIDVVEGGRIEWDAGLKDIAMSF 546
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQ 494
S++ + + G + ++ R D + + P + + Q
Sbjct: 547 LSIRRTVTDSGGAITFKASRDNVTGHADDFFAISHAVINEPLNYEHKRTSSWAMQ 601
>gi|271499312|ref|YP_003332337.1| hypothetical protein Dd586_0742 [Dickeya dadantii Ech586]
gi|270342867|gb|ACZ75632.1| protein of unknown function DUF264 [Dickeya dadantii Ech586]
Length = 591
Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats.
Identities = 56/459 (12%), Positives = 125/459 (27%), Gaps = 55/459 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H ++ + K R IG T A+ +
Sbjct: 141 DTWADEHLFGYQKHLRANLGKQVRNILK-----SRQIGATWYFAFEAFENAVLTGEPQIF 195
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHC 160
A S Q EV + + + +F++ + +
Sbjct: 196 LSA-SRAQA------EVFRSYIVNIAQQYFDITLTGNPIRLSNGAELRFLSTNKNTAQSY 248
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
S + Y + + + H+ + + ++ T N
Sbjct: 249 SGHLYCDEYFWVPNFAHLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGEEWKRGNK 308
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
R + L + + ++ G + + E + RY +D+
Sbjct: 309 KRAGVNFPGFDELRDG-GRLCPDGQWRY-VITMEDAIRGGFNLASLEKLRNRYNVDT--F 364
Query: 281 RVEVCGQFPQQDIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDN 331
+ F F ++ ++ A ++ P P + G D A G +
Sbjct: 365 NMLYMCVFVDNKDAVFSFDDLERCGVDPATWQDHDPTAPRPFGNREVWGGYDPARSGDLS 424
Query: 332 T------VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
T + + + +W + R N+I L ++Y I ID GA +
Sbjct: 425 TFVIVAPPIYEGEKFRVLLVVNWHGMNFRYQANQIKKLFQRYHFTYIGIDVTGIGAGVFE 484
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSG---LIQNLKS 441
++ R + L +K AD +E + + + +
Sbjct: 485 NIQ---------HFAMRQATAIRYGVETKNRLVMKAADVVESQRIEWDQDEKAIPASFMA 535
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
++ + + + R + + + P
Sbjct: 536 IRRTTTASGNAMTFIADRSAETGHAEAFFAIAHALDNEP 574
>gi|163801735|ref|ZP_02195633.1| hypothetical protein 1103602000597_AND4_09782 [Vibrio sp. AND4]
gi|159174652|gb|EDP59454.1| hypothetical protein AND4_09782 [Vibrio sp. AND4]
Length = 546
Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats.
Identities = 55/462 (11%), Positives = 121/462 (26%), Gaps = 45/462 (9%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + N+++ + K R IG T + L + A S
Sbjct: 105 ESLFEYQHTMRNNLHQRTRNILK-----SRQIGATYYFSGEALEDAILTGDNQIFLSA-S 158
Query: 117 ETQLK-----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
Q + A+ + L N + + + Y
Sbjct: 159 RAQAEVFRSYIIAIAQSFLGIELTGNPIILSNGAELRFLSTNSKTAQSYHGHVYVDEYFW 218
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + ++ T R I
Sbjct: 219 IPKFDELNKLASAMATHKNWRKTYFSTPSAKTHQAYTFWTGDQWRRGRDTRANIEFPTFD 278
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ I+ G + + + Y D F
Sbjct: 279 --EYRDGGRLCPDKQWRYVVTIEDAAAGGCELFDIDELRDEYSKDD--FDNLFMCIFVDG 334
Query: 292 DIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVLR----- 337
F + ++ + ++ P+ P + +G D + + +VV+
Sbjct: 335 ASSVFKFSALEKAMVDISRWQDFKPNDNDPFERREVWLGYDPSRTRDNACLVVVAPPVIA 394
Query: 338 -RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ W + + ++S + E+Y + ID GA D L
Sbjct: 395 IEKFRVLEKHYWRGLNFQYQAQQVSKVFERYNVSYLGIDTTGIGAGVYDLLSKK------ 448
Query: 397 VLGQKRAVDLEFCRNR-RTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGE 452
R N + L +KM D +E + + + ++K +
Sbjct: 449 ---HPRETVAIQYSNESKNRLVMKMIDVVEANRIQFDAEHKDIAMAFMAIKRATTNSGNS 505
Query: 453 LAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQ 494
+ +++R + D + + P D R ++Q
Sbjct: 506 MTFKAERSELTGHADAFWAISHACINEP--LDHTAKRKSTWQ 545
>gi|323978427|gb|EGB73511.1| terminase [Escherichia coli TW10509]
Length = 595
Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 50/446 (11%), Positives = 121/446 (27%), Gaps = 43/446 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-E 117
+ + + K R IG T A+ + A+ +
Sbjct: 153 LFAYQLRLRENKFRRVRNLLK-----SRQIGATYYFAFEAFEDAVLTGDTQIFLSASKRQ 207
Query: 118 TQLKTTLWAEVSKWLSLLPNKH---WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
++ T ++++ +P K + A + S + Y +
Sbjct: 208 AEVFRTYIVKIAQTEFGIPIKGNPVKLSNLAELYFLATNSNTAQSNSGHLYIDEYLWIPG 267
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + H+ + + + +S T + + R + + L
Sbjct: 268 FRRLNEVASGMATHSHWRITYFSTPSSKTHQGYPFWSGDEWRKGDPKRKGVEFPSFDELR 327
Query: 235 GKFYEIFNKPLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
E P W+ ++ G + + + RY + F
Sbjct: 328 DGGREC---PDGQWRYVVTLEDAIAGGFNLADINELRERYNE--TAFNMLFMCVFVDDKE 382
Query: 294 DSFIPLNIIEEALN---------REPCPDPYAPLIMGCDIAEEGGDNTVVVL------RR 338
F +++ ++ + P + G D A G + T VVL
Sbjct: 383 SVFKFDDLVRCGVDVSTWEDFHPEDAMPFGNREVWGGFDPARSGDNATFVVLSPPLVAAE 442
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ W + +I + +Y I ID G + ++
Sbjct: 443 RFRVLEKHHWRSMSFQFMAERIRSIKARYNMTFIGIDVTGLGYGVFELVQG--------- 493
Query: 399 GQKRAVDLEFCR-NRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGELA 454
+R + L +KM D + + + + +++ + ++
Sbjct: 494 FARRETVAIHYSVESKNRLVMKMLDLIYANRIEWDEEATDIPASFLAIRQESTNSGNKVT 553
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENP 480
++R + D + + + P
Sbjct: 554 FTAERSEETGHADIFFAIAHAASNEP 579
>gi|188495109|ref|ZP_03002379.1| terminase [Escherichia coli 53638]
gi|188490308|gb|EDU65411.1| terminase [Escherichia coli 53638]
Length = 607
Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 56/476 (11%), Positives = 135/476 (28%), Gaps = 64/476 (13%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ + + + K GR G T AW + A+
Sbjct: 154 HLFEYQQYVREHGDELFRFILK-----GRQEGFTYYFAWEGFEKAVLTGKNQIFFSASKP 208
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQ-----------SLSLHPAPWYSDVLHCSLGIDS 166
AEV ++ L + +F ++ ++ A + S +
Sbjct: 209 Q-------AEVFRFYILSIAQQFFGVELKGNPIRLSNGAILRFLATNPNTAQSYSGDLYG 261
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ + + + H+ + + + ++ T L + R
Sbjct: 262 DEVFWISKFARLHEVASAMATHDEFRITYFSTPSTKTHQAYRLWTGDEWKGDDPKRKAAE 321
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
+ L K ++ + + D E + RY + +
Sbjct: 322 FPTSKELR-KGGQVCPDGIWRYVITMEDACAKGLSARVNIEKLRNRYS--ATAFAMLYMC 378
Query: 287 QFPQQDIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVL- 336
+F F ++ +E + ++ P P + G D + G ++T V++
Sbjct: 379 EFTDSRDTVFKFSDLEKCEVEFGIWQDFDPSALRPFGNREVWGGFDPSRTGDNSTFVIVA 438
Query: 337 -----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EML 390
+ + ++ W + +I L+++YR I +D G D L
Sbjct: 439 PPVEPKEKFRVLAVYQWVGLNFTWQVKQIEELMKRYRFTHIGVDITGIGRGVYDQLVRSA 498
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN-----------L 439
V + + L +KM D +E + +
Sbjct: 499 PREVMGINYSVDNKNK---------LVLKMIDLIERRRIQWVKDAVDEVTKERADIPLAF 549
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+++ + + + ++R + D + + P D ++ R + +
Sbjct: 550 MAIRRVMTASQNAMTFAAERSETTGHADVFFAISHAVCNEP--LDYEYDRPSVWAF 603
>gi|152985800|ref|YP_001350388.1| hypothetical protein PSPA7_5052 [Pseudomonas aeruginosa PA7]
gi|152986886|ref|YP_001346099.1| hypothetical protein PSPA7_0704 [Pseudomonas aeruginosa PA7]
gi|150960958|gb|ABR82983.1| conserved hypothetical protein, putative [Pseudomonas aeruginosa
PA7]
gi|150962044|gb|ABR84069.1| conserved hypothetical protein, putative [Pseudomonas aeruginosa
PA7]
Length = 682
Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 60/449 (13%), Positives = 116/449 (25%), Gaps = 44/449 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN--- 115
M + NP + I R IG T A + A+
Sbjct: 152 MFGYQLELFAAKKNPLTARIR-HILKSRQIGLTYYFAAEAFMDAVLTGDNQIFLSASRAQ 210
Query: 116 -----SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
S W ++ + + + + + + +
Sbjct: 211 SEVFRSYIVAFAAQWFDIELSGNPIILSKDGKPWAELRFLSTNSNTAQSYHGHVYIDEVF 270
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ + + + H + + + ++ T RN+ R P
Sbjct: 271 WIPNFQKLQTVASAMASHAKWRLTYFSTPSAVTHQAYPYWTGEEF--RNSKRGKKAGPWP 328
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ K I G + E + Y D + +F
Sbjct: 329 SEAQIHAGALCPDGQWR-KVITIQDAIAGGCNLFDLERLQLEY--DEERFEQLFMCKFID 385
Query: 291 QDIDSFIPLNIIEEALNR---EPCPDPY-------APLIMGCDIAEEGGDNTVVVL---- 336
+F L +E + DP P+ +G D + D T VV+
Sbjct: 386 STQAAF-ALADLERCYSDLGLWTDYDPDSPRPFDNRPVWLGYDPSRTRDDATCVVVAPPL 444
Query: 337 --RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
I W T +I L E++ I ID G D ++
Sbjct: 445 EPGGKFRILEKHSWRGTSFTHQAKQIEKLCERFNVQHIGIDITGVGYGVFDLVKDFFPRA 504
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ A + L +K D ++ + + + S+K +G
Sbjct: 505 TPIHYSLEAKNA---------LVLKAQDVIQGKRIEWDAGWTEVAAAFLSIKR-GTTASG 554
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + R + D + +M+ A P
Sbjct: 555 LITYSASRTEATGHADVAWSIMHALAHEP 583
>gi|194436023|ref|ZP_03068125.1| putative conserved hypothetical protein [Escherichia coli 101-1]
gi|194424751|gb|EDX40736.1| putative conserved hypothetical protein [Escherichia coli 101-1]
Length = 595
Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 51/446 (11%), Positives = 120/446 (26%), Gaps = 43/446 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-E 117
+ + + K R IG T A+ + A+ +
Sbjct: 153 LFAYQLRLRENKFRRVRNLLK-----SRQIGATYYFAFEAFEDAVLTGDTQIFLSASKRQ 207
Query: 118 TQLKTTLWAEVSKWLSLLPNKH---WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
++ T ++++ +P K + A + S + Y +
Sbjct: 208 AEVFRTYIVKIAQTEFGIPIKGNPVKLSNLAELYFLATNSNTAQSNSGHLYIDEYLWIPG 267
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + H + + + +S T + + R + + L
Sbjct: 268 FRRLNEVASGMATHKHWRITYFSTPSSKTHQGYPFWSGDEWRKGDPKRKGVEFPSFDELR 327
Query: 235 GKFYEIFNKPLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
E P W+ ++ G + + + RY + F
Sbjct: 328 DGGREC---PDGQWRYVVTLEDAIAGGFNLADINELRERYNE--TAFNMLFMCVFVDDKE 382
Query: 294 DSFIPLNIIEEALN--REPCPDPYAPL-------IMGCDIAEEGGDNTVVVLR------R 338
F +++ ++ P P+ G D A G + T VVL
Sbjct: 383 SVFKFDDLVRCGVDVSTWEDFHPEEPMPFGNREVWGGFDPARSGDNATFVVLAPPLVSAE 442
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ W + +I + +Y I ID G + ++
Sbjct: 443 RFRVLEKHHWRSMSFQFMAERIRSIKARYNMTFIGIDVTGLGYGVFELVQG--------- 493
Query: 399 GQKRAVDLEFCR-NRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGELA 454
+R + L +KM D + + + + +++ + ++
Sbjct: 494 FARRETVAIHYSVESKNRLVMKMLDLIYANRIEWDEEATDIPASFLAIRQESTNSGNKVT 553
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENP 480
++R + D + + + P
Sbjct: 554 FTAERSEKTGHADIFFAIAHAASNEP 579
>gi|170769336|ref|ZP_02903789.1| conserved hypothetical protein [Escherichia albertii TW07627]
gi|170121988|gb|EDS90919.1| conserved hypothetical protein [Escherichia albertii TW07627]
Length = 595
Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 51/446 (11%), Positives = 120/446 (26%), Gaps = 43/446 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-E 117
+ + + K R IG T A+ + A+ +
Sbjct: 153 LFAYQLRLRENKFRRVRNLLK-----SRQIGATYYFAFEAFEDAVLTGDTQIFLSASKRQ 207
Query: 118 TQLKTTLWAEVSKWLSLLPNKH---WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
++ T ++++ +P K + A + S + Y +
Sbjct: 208 AEVFRTYIVKIAQTEFGIPIKGNPVKLSNLAELYFLATNSNTAQSNSGHLYIDEYLWIPG 267
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + H + + + +S T + + R + + L
Sbjct: 268 FRRLNEVASGMATHKHWRITYFSTPSSKTHQGYPFWSGDEWRKGDPKRKGVEFPSFDELR 327
Query: 235 GKFYEIFNKPLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
E P W+ ++ G + + + RY + F
Sbjct: 328 DGGREC---PDGQWRYVVTLEDAIAGGFNLADINELRERYNE--TAFNMLFMCVFVDDKE 382
Query: 294 DSFIPLNIIEEALN--REPCPDPYAPL-------IMGCDIAEEGGDNTVVVLR------R 338
F +++ ++ P P+ G D A G + T VVL
Sbjct: 383 SVFKFDDLVRCGVDVSTWEDFHPEEPMPFGNREVWGGFDPARSGDNATFVVLAPPLVSAE 442
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ W + +I + +Y I ID G + ++
Sbjct: 443 RFRVLEKHHWRSMSFQFMAERIRSIKARYNMTFIGIDVTGLGYGVFELVQG--------- 493
Query: 399 GQKRAVDLEFCR-NRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGELA 454
+R + L +KM D + + + + +++ + ++
Sbjct: 494 FARRETVAIHYSVESKNRLVMKMLDLIYANRIEWDEEATDIPASFLAIRQESTNSGNKVT 553
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENP 480
++R + D + + + P
Sbjct: 554 FTAERSEKTGHADIFFAIAHAASNEP 579
>gi|118590957|ref|ZP_01548357.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614]
gi|118436479|gb|EAV43120.1| hypothetical protein SIAM614_19891 [Stappia aggregata IAM 12614]
Length = 526
Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 43/275 (15%), Positives = 95/275 (34%), Gaps = 27/275 (9%)
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD-SDV 279
W+ P + G+ + F R + ++ + +
Sbjct: 230 RTVWVDGPEPVEIEGEIRT------PKSRTFIPARRQDNRFLGTDYDAQLDQMPEPMRTA 283
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNR-EPCPDPYAPL-IMGCDIAEEGGDNTVVVLR 337
+ Q IP + ++ A R + D P+ ++ D+A+ G D TV+
Sbjct: 284 LKTGDFLAARQDHEWQVIPSDWVDLAFERYDQGIDRDEPMTVLAVDVAQGGKDRTVLQPL 343
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA--NNTGARTCDYL-EMLGYHV 394
G E TD + + S ++ + R +A+I+ G T +L
Sbjct: 344 HGRRFETNIVRKGTDTKDGADVGSLIIRERRDNAMIVVDCTGGWGGDTVGFLKRENNIPA 403
Query: 395 YRVLGQKRAVDLEF-----CRNRRTELHVKMADWLE-----FASLINHSGLIQNLKSLKS 444
+ + ++ + N R EL+ ++ + L ++ + + L + +
Sbjct: 404 EKCVFSAQSGERAKDSRIPFYNLRAELYWRLREALHPKSGLGLAIRRSATVKAQLTAHRW 463
Query: 445 FIVPNTGELAIESK---RVKGAKSTDYSDGLMYTF 476
+ G++ IESK + + S D +D ++
Sbjct: 464 KM--RNGKILIESKEEIKDRLGSSPDEADAIVEAL 496
>gi|187939507|gb|ACD38655.1| terminase ATPase subunit [Pseudomonas aeruginosa]
Length = 593
Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 53/435 (12%), Positives = 106/435 (24%), Gaps = 51/435 (11%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ----------LKTTLWAEVSKW 131
I R IG T A L + A+ + + E+
Sbjct: 169 ILKSRQIGATFYFAREALIDALETGRNQIFLSASKAQAHIFKAYIQAFARDAVGVELKGD 228
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+LPN + A Y + + + + + + Y
Sbjct: 229 PIILPNGAELHFLGTNARTAQGYHGNFYFD------EFFWTFKFKELNKVASGMAMQKRY 282
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+ +S + + I + D R
Sbjct: 283 RRTYFSTPSSMAHEAYTFWTGERFNKGKPAADRIKIDVGHDA----LQQGRLCEDRIWRQ 338
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ E + R D++ + + QF S PL +++ +
Sbjct: 339 IVTILDAEARGCDLFDIDELRLEYDAEAFQNLLMCQFVDD-GASIFPLTMLQPCMVDSWD 397
Query: 312 PD------------PYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDL 353
+ +G D AE G +VV+ + + D
Sbjct: 398 LWSEDYKPFALRPFGDRQVWLGYDPAETGDTAGLVVVAPPAVPGGKFRVLERHQFRGKDF 457
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
I + ++Y I +D G+ + V +
Sbjct: 458 AEQAEFIRKVTQRYWVTYIGVDTTGMGSGVAQLVRQFFPGVRTFSYSPE---------VK 508
Query: 414 TELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD 470
T+L +K ++ L + L Q L +++ I + + R D +
Sbjct: 509 TQLVMKAWSVIKNGRLEFDAGWTDLAQALMAIRKTITAGGRQFTYTAGRNDNTGHADLAW 568
Query: 471 GLMYTFAENPPRSDM 485
L + P
Sbjct: 569 ALFHALQNEPLEGQT 583
>gi|317152167|ref|YP_004120215.1| hypothetical protein Daes_0447 [Desulfovibrio aespoeensis Aspo-2]
gi|316942418|gb|ADU61469.1| hypothetical protein Daes_0447 [Desulfovibrio aespoeensis Aspo-2]
Length = 590
Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats.
Identities = 60/467 (12%), Positives = 128/467 (27%), Gaps = 66/467 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+Q E + + H + + I R IG T A +
Sbjct: 148 EYQHELRQAKETHRVRN------------ILKSRQIGATWYFAQEAFEDACLSGDNQIFL 195
Query: 113 LANSETQLKTTLWAEVSKWLSLL----------PNKHWFEMQSLSLHPAPWYSDVLHCSL 162
A + Q A + + H Q+ +
Sbjct: 196 SA-TRRQA-DVFRAYIVAIVKEKFDIELKGKDEIVLHTAHGQATLYFLSNNSKSAQSYHG 253
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ Y + + + + + H + + + + ++ T + +L +R + +
Sbjct: 254 HVYIDEYFWITKFNELYKVASAMAAHKKWRITLFSTPSAVTHEAYDLWTGDRFNKRWSRQ 313
Query: 223 FWIMTSNPRRLSGKFYEIFNK----PLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDS 277
+R +E + P W+ I G D E + +Y D
Sbjct: 314 A-------KRKEFPSFEAMQRGVVCPDKVWRKVITIKDAEAGGCDLFDFEDLNLQYSTDE 366
Query: 278 DVTRVEVCGQFPQQDIDSFI--PLNIIEEALNREPCPDPYA-------PLIMGCDIAEEG 328
R +F F L ++ +P A P+ G D +
Sbjct: 367 --FRNLFMCEFVDDLQAVFRLHNLEACYGDMDEWTDFNPDAARPFGNLPVWGGYDPSRNR 424
Query: 329 GDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
D + V+L + + W +I L +++ I ID G
Sbjct: 425 DDASFVILAPPLQPGGMFRVLARYKWVDKSYTWQAQRIKELTQQFNFVHIGIDVTGPGIG 484
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNL 439
+ ++ + + +T L +K D +E + + +
Sbjct: 485 VFESVQAFFPAAMPITYGVQT---------KTTLVLKAKDVIESGRIQWDASLTDIAHAF 535
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
+++ G + + R + D + +M+ A P S
Sbjct: 536 LTIRQ-GTTGNGMITYSAGRTEATGHADVAWAIMHALANEPLNSQHQ 581
>gi|148807391|gb|ABR13464.1| predicted ATPase terminase subunit [Pseudomonas aeruginosa]
Length = 593
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/435 (12%), Positives = 106/435 (24%), Gaps = 51/435 (11%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ----------LKTTLWAEVSKW 131
I R IG T A L + A+ + + E+
Sbjct: 169 ILKSRQIGATFYFAREALIDALETGRNQIFLSASKAQAHIFKAYIQAFARDAVGVELKGD 228
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+LPN + A Y + + + + + + Y
Sbjct: 229 PIILPNGAELHFLGTNARTAQGYHGNFYFD------EFFWTFKFKELNKVASGMAMQKRY 282
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+ +S + + I + D R
Sbjct: 283 RRTYFSTPSSMAHEAYTFWTGERFNKGKPAADRIKIDVSHDA----LQQGRLCEDRIWRQ 338
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ E + R D++ + + QF S PL +++ +
Sbjct: 339 IVTILDAEARGCDLFDIEELRLEYDAEAFQNLLMCQFVDD-GASIFPLTMLQPCMVDSWD 397
Query: 312 PD------------PYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDL 353
+ +G D AE G +VV+ + + D
Sbjct: 398 LWSEDYKPFALRPFGDRQVWLGYDPAETGDTAGLVVVAPPAVPGGKFRVLERHQFRGKDF 457
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
I + ++Y I +D G+ + V +
Sbjct: 458 AEQAEFIRKVTQRYWVTYIGVDTTGMGSGVAQLVRQFFPGVRTFSYSPE---------VK 508
Query: 414 TELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD 470
T+L +K ++ L + L Q L +++ I + + R D +
Sbjct: 509 TQLVMKAWSVIKNGRLEFDAGWTDLAQALMAIRKTITAGGRQFTYTAGRNDNTGHADLAW 568
Query: 471 GLMYTFAENPPRSDM 485
L + P
Sbjct: 569 ALFHALQNEPLEGQT 583
>gi|220903520|ref|YP_002478832.1| hypothetical protein Ddes_0239 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219867819|gb|ACL48154.1| protein of unknown function DUF264 [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 615
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 58/438 (13%), Positives = 116/438 (26%), Gaps = 44/438 (10%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ------LKTTLWAEVSKWLSLLP-N 137
R +G T A + A ++ L P
Sbjct: 195 ARQLGFTWFFAQEAFEDAVLNGDNQIFLSATRAQSEIFLHYIRDICGEAFDIELKGNPLV 254
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
H + + A + + M + + + + H + + +
Sbjct: 255 LHTAKGPATLYFLATSSRSAQGYHGHVYGDEFFWMPKFKEFWKVASGMAAHAKWRRTMFS 314
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
+ T + R N P + + + I D+ R +
Sbjct: 315 TPSIITHEAYPRWSGKEYLSRFKNPA----PWPDKAALRQGLICP---DNTYRRIVTLDD 367
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---------R 308
E + + R +F + F+ L ++E + R
Sbjct: 368 AEAGGCNLFNRADLEQEYSPEDMRQLFGCEFIDDTLAVFL-LGLLEGCMEDPDGWGIDLR 426
Query: 309 EPCPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISG 362
+ P A + G D + D + VVL W +I
Sbjct: 427 QARPVDNAGVWGGYDPSRTRDDASFVVLLPPQKAGDKIRTLERHTWKGKSYLWQVGRIRE 486
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
L +KYR + ID G + + L V + A + L +K +
Sbjct: 487 LHDKYRFQHMGIDVTGPGQAVLENVR-LFCPVAMPITYSLAT--------KAALVLKALE 537
Query: 423 WLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF-AE 478
+E L + + +++ +G++ + R D + +M+ AE
Sbjct: 538 VMEQKRLAWDAAQTDIAHAFMTIRQV-ATPSGQITYAAHRTDTTGHADVAWAIMHALAAE 596
Query: 479 NPPRSDMDFGRCPSYQYE 496
R G+ S +
Sbjct: 597 PLARQSRAGGKTSSLAFS 614
>gi|145708080|ref|YP_001165255.1| terminase [Ralstonia phage phiRSA1]
gi|139003869|dbj|BAF52383.1| terminase [Ralstonia phage phiRSA1]
Length = 593
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/469 (11%), Positives = 114/469 (24%), Gaps = 41/469 (8%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAIS---AGRGIGKTTLNA 95
G + P +P Q + +E + I R IG T A
Sbjct: 124 GPRSKPERNAISPEE-QTQLLEAFRDSMFDYQRVWYEAGQVERIRNLLKSRQIGATWYFA 182
Query: 96 WLVLWLMSTRPGISVICLANSET----QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA 151
T + A+ + +A+ + + L + +
Sbjct: 183 REAFIDALTTGRNQIFLSASKAQAHVFKQYIIQFAKDAAGIELKGDPMVLPNGATLYFLG 242
Query: 152 PWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGI 211
+ Y + R + + + H + + +S + +
Sbjct: 243 TNARTAQSYHGNLYFDEYFWVPRFQELRKVASGMAIHKHWRQTYFSTPSSLSHEAYPFWS 302
Query: 212 LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA 271
A I + W++ + + +
Sbjct: 303 GALFNRGKAKDKQIKLDLSHA---ALRDGMRCADGQWRQI-VTVEDALRGGCNLFDLDQL 358
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSF----------IPLNIIEEALNREPCPDPYAPLIMG 321
R + F + F + E+ P P P+ +G
Sbjct: 359 RLEYSELDFANLLMCVFIDDNASVFPLAMLMRGMVDSWEVWEDFRPFAPRPFGNRPVWVG 418
Query: 322 CDIAEEGGDNTVVVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
D GGD+ +V+ + + D I + E+Y + I
Sbjct: 419 YDPNGGGGDSAALVVVAPPLVPGGKFRVLERHQFRGIDYEEQAGAIRRVAERYDVAYVGI 478
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS- 433
D G ++ + +T L +K D + L +
Sbjct: 479 DRTGIGDAVFRLVQKFRPDAEGFTYS---------VDVKTALVLKAHDVISKGRLEFDAG 529
Query: 434 --GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ S+K G + ++ R + D + M+ + P
Sbjct: 530 WTDFAASFMSIKKTTTAAGGRVTYQAGRSEDTSHADLAWACMHALSHEP 578
>gi|17313220|ref|NP_490600.1| predicted DNA-dependent ATPase terminase subunit [Pseudomonas phage
phiCTX]
gi|4063774|dbj|BAA36228.1| unnamed protein product [Pseudomonas phage phiCTX]
Length = 594
Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/435 (12%), Positives = 106/435 (24%), Gaps = 51/435 (11%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ----------LKTTLWAEVSKW 131
I R IG T A L + A+ + + E+
Sbjct: 169 ILKSRQIGATFYFAREALIDALETGRNQIFLSASKAQAHIFKAYIQAFARDAVGVELKGD 228
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+LPN + A Y + + + + + + Y
Sbjct: 229 PIILPNGAELHFLGTNARTAQGYHGNFYFD------EFFWTFKFKELNKVASGMAMQKRY 282
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+ +S + + I + D R
Sbjct: 283 RRTYFSTPSSMAHEAYTFWTGERFNKGKPAADRIKIDVSHDA----LQQGRLCEDRIWRQ 338
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ E + R D++ + + QF S PL +++ +
Sbjct: 339 IVTILDAEARGCDLFDIDELRLEYDAEAFQNLLMCQFVDD-GASIFPLTMLQPCMVDSWD 397
Query: 312 PD------------PYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDL 353
+ +G D AE G +VV+ + + D
Sbjct: 398 LWSEDYKPFALRPFGDRQVWLGYDPAETGDTAGLVVVAPPAVPGGKFRVLERHQFRGKDF 457
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
I + ++Y I +D G+ + V +
Sbjct: 458 AEQAEFIRKVTQRYWVTYIGVDTTGMGSGVAQLVRQFFPGVRTFSYSPE---------VK 508
Query: 414 TELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD 470
T+L +K ++ L + L Q L +++ I + + R D +
Sbjct: 509 TQLVMKAWSVIKNGRLEFDAGWTDLAQALMAIRKTITAGGRQFTYTAGRNDNTGHADLAW 568
Query: 471 GLMYTFAENPPRSDM 485
L + P
Sbjct: 569 ALFHALQNEPLEGQT 583
>gi|226329986|ref|ZP_03805504.1| hypothetical protein PROPEN_03899 [Proteus penneri ATCC 35198]
gi|225200781|gb|EEG83135.1| hypothetical protein PROPEN_03899 [Proteus penneri ATCC 35198]
Length = 584
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/453 (11%), Positives = 108/453 (23%), Gaps = 45/453 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + R IG T A T V A+
Sbjct: 134 EDIFRNTLFEYQKVWYRAGHHRIRNILKS-RQIGATFYFAREAFIDALTTGRNQVFLSAS 192
Query: 116 SETQLKTTLWAE-VSKW-----LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ ++ E + K + L + + +
Sbjct: 193 K---AQAYMFREYIIKMALEVDVELKGDPLMLSNGATLYFLGTNARTAQSYHGNLYLDET 249
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ + + + + + + ++ + + +
Sbjct: 250 FWIPKFQELRKVTSGMAIQKHWRQTYFSTPSTMSHEAYPFWSGKLYNRGRKKEDRVEIDI 309
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ + I+ G D E + Y D + F
Sbjct: 310 SH-EALVNGRLCEDGQWRQIV-NIEDALRGGCDLFDLEQLKKEYSPDE--YNNLLMCHFM 365
Query: 290 QQDIDSF----------IPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVL 336
F + ++ P Y P+ +G D E G VV+
Sbjct: 366 DDIESLFNFNMMQNCMVDSWEVWDDIQPLALRPYGYDPVWVGYDPSKGGENGDSAGCVVI 425
Query: 337 ------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
I W D R + I + E++ + + ID G +
Sbjct: 426 APPKVPGGKFRILERHQWRGMDFRAQADAIKKITERFYVEYMGIDTTGLGHGVYQNVIQF 485
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIV 447
+ N + L +K D + L + +IQ+ S++
Sbjct: 486 FPAAREFIYNP---------NVKNALVIKAYDVISHGRLEFDAQCVDIIQSFTSIRRTTT 536
Query: 448 PNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ E+ R + + D + M+ P
Sbjct: 537 GSGNRPTYEASRSEESGHADLAWATMHALFNEP 569
>gi|324115403|gb|EGC09352.1| terminase [Escherichia coli E1167]
Length = 572
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/439 (12%), Positives = 110/439 (25%), Gaps = 45/439 (10%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 153 EYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 207
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 208 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 265
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 266 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 325
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 326 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 382
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 383 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 442
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 443 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 493
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELA 454
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 494 SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSAT 553
Query: 455 IESKRVKGAKSTDYSDGLM 473
E+ R + A D + M
Sbjct: 554 YEASRSEEASHADLAWATM 572
>gi|307315386|ref|ZP_07594955.1| protein of unknown function DUF264 [Escherichia coli W]
gi|307315408|ref|ZP_07594975.1| protein of unknown function DUF264 [Escherichia coli W]
gi|306905258|gb|EFN35804.1| protein of unknown function DUF264 [Escherichia coli W]
gi|306905260|gb|EFN35805.1| protein of unknown function DUF264 [Escherichia coli W]
Length = 385
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 70/242 (28%), Gaps = 30/242 (12%)
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY--------- 315
E + D + +F F + ++ + Y
Sbjct: 145 DIEQLKRENSADD--FKNLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYAPFAANPFG 202
Query: 316 -APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL I W D T I L EKY
Sbjct: 203 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 262
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 263 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRGC 313
Query: 429 LINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDM 485
L + + + +++ + + E+ R + A D + M+ P + +
Sbjct: 314 LEYDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWATMHALLNEPLTAGI 373
Query: 486 DF 487
Sbjct: 374 ST 375
>gi|323943519|gb|EGB39636.1| terminase [Escherichia coli H120]
Length = 367
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 70/242 (28%), Gaps = 30/242 (12%)
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY--------- 315
E + D + +F F + ++ + Y
Sbjct: 127 DIEQLKRENSADD--FKNLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYAPFAANPFG 184
Query: 316 -APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL I W D T I L EKY
Sbjct: 185 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 244
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ I IDA G + A D+ + +T + +K D +
Sbjct: 245 VEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRGC 295
Query: 429 LINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDM 485
L + + + +++ + + E+ R + A D + M+ P + +
Sbjct: 296 LEYDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWATMHALLNEPLTAGI 355
Query: 486 DF 487
Sbjct: 356 ST 357
>gi|146313136|ref|YP_001178210.1| hypothetical protein Ent638_3501 [Enterobacter sp. 638]
gi|145320012|gb|ABP62159.1| protein of unknown function DUF264 [Enterobacter sp. 638]
Length = 589
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/473 (12%), Positives = 116/473 (24%), Gaps = 60/473 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
F++ + LN + I R IG T A L G + I L+ S+
Sbjct: 141 FLDQSFEYQLNWHRAGIAHRIR-HILKSRQIGATFYFAREALLRALKT-GQNQIFLSASK 198
Query: 118 TQLK-----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
TQ +A + + + + + + +
Sbjct: 199 TQAYVFRKYIIAFARLVDVDLSGDPIVIGNNGAELIFLGTNSNTAQSHNGDLYVDEIFWI 258
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ + + + + ++ A FW R
Sbjct: 259 PNFQRLRKVASGMASQSHLRTTYFSTPST--------------LAHGAYPFWSGELFNRG 304
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGII----------ARYGLDS-DVTR 281
S + + + + E + +S D R
Sbjct: 305 RSNRDERVDIDISHKALAGGVLCPDGQWRQIVTIEDALAGGCTLFNLDQLKQENSADDFR 364
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDN 331
+F F + ++ + + P+ +G D + G
Sbjct: 365 NLFMCEFVDDKASVFPFEELQRCMVDAMEEWEDFEQFADRPFNWRPVWIGYDPSHTGDSA 424
Query: 332 TV------VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
+V I W D I L EKY D I IDA G
Sbjct: 425 GCAVLAPPLVAGGKFRILERHQWKGMDFAAQAEAIRSLTEKYTVDYIGIDATGIGQGVYQ 484
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSL 442
+ + +T + +K D + L + + Q+ ++
Sbjct: 485 LVRSFFPAARAIRYTPE---------MKTAMVLKAKDTIRRGCLEYDAGATDITQSFMAI 535
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + + E+ R + A D + M+ P + +
Sbjct: 536 RKTMTSSGRSSTYEASRSEEASHADIAWATMHALLNEPLSAGSGMHSNSILEI 588
>gi|197285843|ref|YP_002151715.1| phage terminase, ATPase subunit [Proteus mirabilis HI4320]
gi|194683330|emb|CAR44037.1| phage terminase, ATPase subunit [Proteus mirabilis HI4320]
Length = 584
Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/453 (11%), Positives = 108/453 (23%), Gaps = 45/453 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + R IG T A T V A+
Sbjct: 134 EDIFRNTLFEYQKVWYRAGHHRIRNILKS-RQIGATFYFAREAFIDALTTGRNQVFLSAS 192
Query: 116 SETQLKTTLWAE-VSKW-----LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ ++ E + K + L + + +
Sbjct: 193 K---AQAYMFREYIIKMALEVDVELKGDPLMLSNGATLYFLGTNARTAQSYHGNLYLDET 249
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ + + + + + + ++ + + +
Sbjct: 250 FWIPKFQELRKVTSGMAIQKHWRQTYFSTPSTMSHEAYPFWSGKLYNRGRKKEDRVDIDI 309
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ + I+ G D E + Y D + F
Sbjct: 310 SH-EALVNGRLCEDGQWRQIV-NIEDALRGGCDLFDLEQLKKEYSPDE--YNNLLMCHFM 365
Query: 290 QQDIDSF----------IPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVL 336
F + ++ P Y P+ +G D E G VV+
Sbjct: 366 DDIESLFNFNMMQNCMVDSWEVWDDIQPLALRPYGYDPVWVGYDPSKGGENGDSAGCVVI 425
Query: 337 ------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
I W D R + I + E++ + + ID G +
Sbjct: 426 APPKVPGGKFRILERHQWRGMDFRAQADAIKKITERFYVEYMGIDTTGLGHGVYQNVIQF 485
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIV 447
+ N + L +K D + L + +IQ+ S++
Sbjct: 486 FPAAREFIYNP---------NVKNALVIKAYDVISHGRLEFDAQCVDIIQSFTSIRRTTT 536
Query: 448 PNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ E+ R + + D + M+ P
Sbjct: 537 GSGNRPTYEASRSEESGHADLAWATMHALFNEP 569
>gi|156976253|ref|YP_001447159.1| hypothetical protein VIBHAR_05025 [Vibrio harveyi ATCC BAA-1116]
gi|156527847|gb|ABU72932.1| hypothetical protein VIBHAR_05025 [Vibrio harveyi ATCC BAA-1116]
Length = 593
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/463 (11%), Positives = 122/463 (26%), Gaps = 45/463 (9%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + N+++ + K R IG T + L + A S
Sbjct: 152 ESLFEYQHTMRNNLHQRTRNILK-----SRQIGATYYFSGEALEDAILTGDNQIFLSA-S 205
Query: 117 ETQLK-----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
Q + A+ + L N + + + Y
Sbjct: 206 RAQAEVFRSYIIAIAQAFLGIELTGNPIILSNGAELRFLSTNSKTAQSYHGHVYVDEYFW 265
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + ++ T + R I
Sbjct: 266 IPKFDELNKLASAMATHKNWRKTYFSTPSAKTHQAYTFWTGDQWRQGRDTRANIEFPTFD 325
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ I+ G + + + Y D F
Sbjct: 326 D--YRDGGRLCPDKQWRYVVTIEDAAAGGCELFDIDELRDEYSKDD--FDNLFMCIFVDG 381
Query: 292 DIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVLR----- 337
F + ++ + ++ P+ P + +G D + + +VV+
Sbjct: 382 ASSVFKFSALEKAMVDISRWQDFKPNDNDPFDRREVWLGYDPSRTRDNACLVVVAPPIVA 441
Query: 338 -RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ W + + ++S + E+Y + ID GA D L
Sbjct: 442 IEKFRVLEKHYWRGLNFQYQAQQVSKVFERYNVSYLGIDTTGIGAGVYDLLSKK------ 495
Query: 397 VLGQKRAVDLEFCRNR-RTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGE 452
R N + L +KM D +E + + + ++K +
Sbjct: 496 ---HPRETVAIQYSNESKNRLVMKMIDVVEANRIQFDAEHKDIAMAFMAIKRATTNSGNS 552
Query: 453 LAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ +++R + D + + P D R ++Q
Sbjct: 553 MTFKAERSELTGHADAFWAISHACINEP--LDHSEKRKSTWQM 593
>gi|323973818|gb|EGB68992.1| terminase [Escherichia coli TA007]
Length = 589
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/446 (12%), Positives = 109/446 (24%), Gaps = 59/446 (13%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK-----TTLWAEVSKWLSLL 135
I R IG T A L G + I L+ S+TQ +A +
Sbjct: 163 HILKSRQIGATFYFARESLLRALKT-GQNQIFLSASKTQAYVFRKYIIAFARLVDVDLSG 221
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+ + + + + + + + + +
Sbjct: 222 DPIVIGNNGAELIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQSHLRTTY 281
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
+ ++ A FW R S + + +
Sbjct: 282 FSTPST--------------LAHGAYPFWSGELFNRGRSNRDERVDIDISHQALTGGVLC 327
Query: 256 RTVEGIDPSFHEGII----------ARYGLDS-DVTRVEVCGQFPQQDIDSFIPLNIIEE 304
+ E + +S D R +F F +
Sbjct: 328 GDGQWRQIVTIEDALAGGCTLFNLDQLKQENSADDFRNLFMCEFVDDKASVFPFEELQRC 387
Query: 305 ---ALNREPCPDPY-------APLIMGCDIAEEGGDNTV------VVLRRGPVIEHLFDW 348
A+ +P+ P+ +G D + G +V I W
Sbjct: 388 MVDAMEEWEDFEPFADRPFNWRPVWIGYDPSHTGDSAGCAVLAPPLVAGGKFRILERHQW 447
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
D I L EKY D I IDA G + +
Sbjct: 448 KGMDFAAQAEAIRALTEKYTVDYIGIDATGIGQGVYQLVRSFFPAARAIRYTPE------ 501
Query: 409 CRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
+T + +K D + L + + Q+ +++ + + E+ R + A
Sbjct: 502 ---MKTAMVLKAKDTIRRGCLEYDAGATDITQSFMAIRKTMTNSGRSATYEASRSEEASH 558
Query: 466 TDYSDGLMYTFAENPPRSDMDFGRCP 491
D + M+ P +
Sbjct: 559 ADIAWATMHALLNEPLSAGSGMQSSS 584
>gi|325921366|ref|ZP_08183223.1| hypothetical protein XGA_2215 [Xanthomonas gardneri ATCC 19865]
gi|325548124|gb|EGD19121.1| hypothetical protein XGA_2215 [Xanthomonas gardneri ATCC 19865]
Length = 594
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/467 (10%), Positives = 104/467 (22%), Gaps = 53/467 (11%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
+Q I R IG T A L T
Sbjct: 149 DGCFDYQR-------DWYRAGNERTR------IILKSRQIGATFYFAREALIDALTTGRN 195
Query: 109 SVICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
+ A+ E + F +
Sbjct: 196 QIFLSASKAQAHLFRGYMQQFVRETIDETLSGGDSIVFPNGAELFFLGTNARTAQGYHGN 255
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ + + + H + + +S + +
Sbjct: 256 FYFDEFFWTYGFNELNKVASGMAMHKKWRKTYFSTPSSMAHEAYTFWTGERRNKGKPAAQ 315
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
I + D R ++ + + R D
Sbjct: 316 RIQIDVSHDA----LAGGRRCQDRAWRQIVNILDAQRRGCDLFDIDELREEYSPDAFANL 371
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREP------------CPDPYAPLIMGCDIAEEGGDN 331
+ +F S PL +++ + P + +G D AE G
Sbjct: 372 LMCEFVDD-GASIFPLAMLQPCMVDSWVEWGQDYKPFAARPYGDRAVWIGYDPAETGDTA 430
Query: 332 TVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
+VVL + + D +I + +Y I ID G+
Sbjct: 431 GLVVLAPPQLPGGKFRLLERIQFRGMDFAKQAAEIERITRRYWVTYIGIDTTGMGSGVAQ 490
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSL 442
++ ++ +T L +K D + L + + Q+L ++
Sbjct: 491 LVKQFFPNLVTFSYSPE---------VKTRLVLKAFDVIHNGRLEFDAGWTDVAQSLMAI 541
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
+ + + + + R + D + L + P
Sbjct: 542 RKTMTASGRQSTFTAGRSEETGHADLAWALFHALQNEPLEGRTARNS 588
>gi|327198304|ref|YP_004306879.1| gp35 [Burkholderia phage KS14]
gi|310657267|gb|ADP02380.1| gp35 [Burkholderia phage KS14]
Length = 604
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/423 (10%), Positives = 104/423 (24%), Gaps = 37/423 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET----QLKTTLWAEVSKWLSLLPN 137
I R IG T A L + A+ + +A + + L +
Sbjct: 180 ILKSRQIGATFYFAREALDDALQTARNQIFLSASKAQAHVFKSYIRQFAAEAAEVELTGD 239
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + Y + + + + H + +
Sbjct: 240 PIILPNMAELIFLGTNSRTAQSYHGNFYFDEYFWVSGFRQLNKVASGMAMHKKWRKTYFS 299
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
+S T + A I S + + ++
Sbjct: 300 TPSSITHEAYTFWSGEHYNRGRAKADHIHL--DISHSALARGRLCEDRQFRQIVTVEDAV 357
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY-- 315
G D + + Y + QF F + ++
Sbjct: 358 AGGCDLFDIDELRLEYSAQE--YANLLMCQFIDDTASIFPLAELQRCMVDSWEEWADDFK 415
Query: 316 ---------APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKI 360
P+ +G D A G +VV+ + H + D I
Sbjct: 416 PLAPRPFGFRPVWVGYDPALSGDSAGLVVVAPPAVPGGKFRVLHKCQFRGMDFEGQAEAI 475
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ ++Y + + ID G ++ + + L +K
Sbjct: 476 RQITQQYNVEYMSIDTTGIGQGVYQLVKQFYPSAVALNYSPE---------IKGRLVLKG 526
Query: 421 ADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
+ L + L Q+ +++ + + ++ E+ R + D + ++
Sbjct: 527 LSVIGKGRLEFDAGWTDLAQSFMAIRKTMTASGRKVTYEASRSEETGHADLAWACLHALD 586
Query: 478 ENP 480
P
Sbjct: 587 NEP 589
>gi|167584288|ref|ZP_02376676.1| bacteriophage terminase, ATPase subunit [Burkholderia ubonensis Bu]
Length = 520
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/450 (10%), Positives = 99/450 (22%), Gaps = 41/450 (9%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
N + R IG T + L + A S Q +
Sbjct: 81 YQKNWYHNGNNRTRNVLKSRQIGATYYFSHEALDDALQSHRNQIFLSA-SRAQAH-VFRS 138
Query: 127 EVSKWLSLLPNKHWFE-------MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
+ ++ + + + + + Y +
Sbjct: 139 YICDFVRKVIDVELTGEVIALPGYDAELYFLSTNSRTAQSYHGNLYFDEYFWVHGFRELN 198
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
+ + + + +S + A I
Sbjct: 199 KVAQAMASQKQWRKTYFSTPSSISHQAYPFWSGEAYNRGRAKADHIHLDISHAALSGGRL 258
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
D R + + + R +D QF F
Sbjct: 259 C----EDRQWRQIVTIEDAAAMGCDLFDLDELRLENSADDFAQLYLCQFIDDSASIFKFA 314
Query: 300 NIIEEALNREPCPDP----------YAPLIMGCDIAEEGGDNTVVVL------RRGPVIE 343
+I ++ D + P+ +G D A G +V++ +
Sbjct: 315 DIQRCMIDSWEEWDDVEFLIQRPFGHRPVWLGYDPALSGDSAGLVIVAPPAVPGGKFRVL 374
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
W D I L E+Y + ID G + +
Sbjct: 375 EKMQWRGMDFEAQAESIRQLTERYTVTYMAIDTTGIGQGVYQLVSKFFPAAVPLNYSPE- 433
Query: 404 VDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRV 460
+ L +K + L + L Q +++ + + ++ + R
Sbjct: 434 --------VKGRLVLKGLSVIGNGRLEFDAGWTDLAQAFMAIRRTMTASGRQVTYHAGRS 485
Query: 461 KGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
+ D + ++ P R
Sbjct: 486 EEIGHADLAWACLHALGNEPLEGSTTNNRS 515
>gi|148727151|ref|YP_001285645.1| putative terminase large subunit [Aeromonas phage phiO18P]
gi|110349286|gb|ABG73174.1| putative terminase large subunit [Aeromonas phage phiO18P]
Length = 604
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/466 (12%), Positives = 123/466 (26%), Gaps = 57/466 (12%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ N I R IG T A L G + A + Q
Sbjct: 161 RVREAKNDPALPRTRNILKSRQIGMTYYFAGEALEDAILTGGNQIFLSA-TRAQA----- 214
Query: 126 AEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHCSLGIDSKHYSTMCR 174
EV + + + + + + S + Y +
Sbjct: 215 -EVFRSYICKIAQTFLGVTLTGNPIVLSNGAELHFCSTNSNSAQSRSGNVYIDEYFWIPN 273
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + + + + +S + + +R I L
Sbjct: 274 FEKLSDVASAMATQSHWRKTYFSTPSSKVHEAYRFWTGDRWKGQRPSRVAIDFPGEDDLR 333
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPS--FHEGIIARYGLDSDVTRVEVCGQFPQQD 292
D R+ I + E + Y + V +F
Sbjct: 334 DGGRIC----PDRQWRYVITIEDAIRLGCHLIDIEELKDEYPEE--VFDRLYMCRFIDDA 387
Query: 293 IDSFIPLNIIEEALN--REPCPDPYAP-------LIMGCDIAEEGGDNTVVVL------R 337
+ F ++ ++ R P P + MG D + + T+VV+
Sbjct: 388 LSVFKFQDMERAGVDPTRWEDYKPGRPDPFGRREVWMGYDPSRTRDNATLVVVAPPTVAG 447
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV-YR 396
+ W + + +I + +K+R + +D + GA D L+ + V +
Sbjct: 448 ERFRVLEKHYWRGLNFQYQAQEIERIAKKFRVTYLGVDVSGIGAGVYDLLKPVFKGVCHP 507
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQ---NLKSLKSFIVPNTGEL 453
+ + ++ L +KM D +E + S ++K G++
Sbjct: 508 INYSIES---------KSRLVLKMIDVVEANRIEWDSSDRDIPLAFLAIKR-STTGGGQM 557
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENP--PRSDMDFGRCPSYQYEG 497
+ R D + + A P S + +
Sbjct: 558 TFRAARDNVTGHADVFFAIAHAVANEPLDTHRKRKSTWATSQEKKA 603
>gi|145298582|ref|YP_001141423.1| phage terminase ATPase subunit [Aeromonas salmonicida subsp.
salmonicida A449]
gi|145300715|ref|YP_001143556.1| phage terminase ATPase subunit [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851354|gb|ABO89675.1| phage terminase ATPase subunit [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853487|gb|ABO91808.1| phage terminase ATPase subunit [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 606
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/458 (12%), Positives = 125/458 (27%), Gaps = 57/458 (12%)
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N I R IG T A L G + A + Q E
Sbjct: 165 REAKNDPALPRTRNILKSRQIGMTYYFAGEALEDAILTGGNQIFLSA-TRAQA------E 217
Query: 128 VSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
V + + + + + + + S + Y +
Sbjct: 218 VFRSYICKIAQTFLGVTLTGNPIVLSNGAELIFCSTNSNSAQSRSGNVYIDEYFWIPNFE 277
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + + + + +S + +R + L
Sbjct: 278 RLSDVSSAMATQSHWRKTYFSTPSSKVHEAYRFWTGDRWKGTRPSRQAVDFPGEDDLRDG 337
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPS--FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
D R+ I + + E + Y + V +F +
Sbjct: 338 GRIC----PDRQWRYVITVEDAIRLGCNLIDIEELKDEYPEE--VFDRLYLCRFIDDALS 391
Query: 295 SFIPLNIIEEALN--REPCPDPYAP-------LIMGCDIAEEGGDNTVVVL------RRG 339
F ++ ++ R P P + +G D + + T+VV+
Sbjct: 392 VFKFQDMERAGVDPTRWEDYKPGRPDPFGRREVWLGYDPSRTRDNATLVVVAPPTVAGER 451
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV-YRVL 398
+ W + + +I+ + +K+R + +D + G D L+ + V + +
Sbjct: 452 FRVLEKHYWRGLNFQYQAQEITRIAKKFRVTYLGVDVSGIGVGVFDLLKPVFKGVCHPIN 511
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLIN---HSGLIQNLKSLKSFIVPNTGELAI 455
+ ++ L +KM D +E + + ++K G++
Sbjct: 512 YSVES---------KSRLVLKMIDVVEANRIEWDCADRDIPLAFLAIKR-STTGGGQMTF 561
Query: 456 ESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
+ R D + + A P D + R S+
Sbjct: 562 RAARDNVTGHADVFFAIAHAVANEP--LDTNRKRKSSW 597
>gi|294624257|ref|ZP_06702968.1| phage-related terminase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292601451|gb|EFF45477.1| phage-related terminase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 587
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/466 (10%), Positives = 113/466 (24%), Gaps = 46/466 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGA------ISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
E +E + ++ + + ++ + I R IG T A L T
Sbjct: 130 EEQIEQLTTAFVDGCFDYQRDWYRASNERTRIILKSRQIGATYYFAREALIDALTTGRNQ 189
Query: 110 VICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
+ A+ E + F +
Sbjct: 190 IFLSASKAQAHLFRGYMQQFVRETIDETLSGGDSIVFPNGAELFFLGTNARTAQGYHGNF 249
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
+ + + + H + + +S + +
Sbjct: 250 YFDEFFWTYGFNELNKVASGMAMHKKWRKTYFSTPSSMAHEAYTFWTGERRNKGKPAAQR 309
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
I + D R ++ + + R D +
Sbjct: 310 IQIDVSHDA----LAGGRRCQDRAWRQIVNILDAQRRGCDLFDIDELREEYSPDAFANLL 365
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPC------------PDPYAPLIMGCDIAEEGGDNT 332
+F S PL +++ + P + +G D AE G
Sbjct: 366 MCEFVDD-GASIFPLAMLQPCMVDSWIEWGQDYKPFAPRPYGDRAVWIGYDPAETGDTAG 424
Query: 333 VVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
+VVL + + D +I + +Y I ID G+
Sbjct: 425 LVVLAPPQQPGGKFRLLERIQFRGMDFAKQAAEIERITRRYWVTYIGIDTTGMGSGVAQL 484
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
++ ++ +T L +K D + L + + Q+L +++
Sbjct: 485 VKQFFPNLVTFSYSPE---------VKTRLVLKAFDVIHNGRLEFDAGWTDVAQSLMAIR 535
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
+ + + + R + D + L + P
Sbjct: 536 KTMTASGRQSTFTAGRSEETGHADLAWALFHALQNEPLEGRTARNS 581
>gi|3337256|gb|AAC34148.1| terminase subunit [Enterobacteria phage 186]
Length = 589
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 55/475 (11%), Positives = 119/475 (25%), Gaps = 55/475 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F +QL++ AH + I R IG T + L
Sbjct: 142 FDQSFEYQLQWYRAGLAHRIRD------------ILKSRQIGATFYFSREALLRALKTGH 189
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHC 160
+ A S+TQ ++ E + L + + + +
Sbjct: 190 NQIFLSA-SKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAKLIFLGTNSNTAQSH 246
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + + ++ + +
Sbjct: 247 NGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGELFNKGRS 306
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+ + + ++ + D + D
Sbjct: 307 RIADRIEIDISHRALAGGQLCDDGQWRQIVTIEDALAGGCTLFDLDQLKRENSDED---F 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPC-----------PDPYAPLIMGCDIAEEGG 329
+ +F F P ++ + P P+ +G D + G
Sbjct: 364 KNLFMCEFVDDKASVF-PFEELQRCMVDVMEEWEDFAPFADHPFGSRPVWIGYDPSHTGD 422
Query: 330 DNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
VVL + W D + I L EKY + I IDA G
Sbjct: 423 SAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQADGIRKLTEKYSVEYIGIDATGLGLGV 482
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLK 440
+ A + + +T + +K D + L + + Q+
Sbjct: 483 FQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDVTQSFM 533
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
S++ + + E+ R + A D + M+ P + ++
Sbjct: 534 SIRKTMTSSGRSATYEASRTEEASHADIAWATMHALLNEPLSAGSGIQPKSILEF 588
>gi|188577619|ref|YP_001914548.1| phage terminase, ATPase subunit [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188522071|gb|ACD60016.1| phage terminase, ATPase subunit [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 533
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 49/434 (11%), Positives = 101/434 (23%), Gaps = 40/434 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-----ETQLKTTLWAEVSKWLSLLP 136
I R IG T A L T + A+ E
Sbjct: 108 ILKSRQIGATFYFAREALIDALTTGRNQIFLSASKAQAHLFRGYMQQFVRETIDETLSGG 167
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ F + + + + + H +
Sbjct: 168 DSIVFPNGAELFFLGTNARTAQGYHGNFYFDEFFWTYGFNELNKVASGMAMHKKWRKTYF 227
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
+ +S + + I + D R ++
Sbjct: 228 STPSSMAHEAYTFWTGERRNKGKPAAQRIQIDVSHDA----LAGGRRCQDRAWRQIVNIL 283
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP------ 310
+ + R D + F S PL +++ +
Sbjct: 284 DAQRRGCDLFDIDELREEYSPDAFANLLMCDFVDD-GASIFPLAMLQPCMVDSWVEWGQD 342
Query: 311 ------CPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNN 358
P + +G D AE G +VVL + + D
Sbjct: 343 YKPFAVRPYGDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAA 402
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+I + +Y I ID G+ ++ ++ +T L +
Sbjct: 403 EIERITRRYWVTYIGIDTTGMGSGVAQLVKQFFPNLVTFSYSPE---------VKTRLVL 453
Query: 419 KMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K D + L + + Q+L +++ + + + + R + D + L +
Sbjct: 454 KAFDVIHNGRLEFDAGWTDVAQSLMAIRKTMTASGRQSTFSAGRSEETGHADLAWALFHA 513
Query: 476 FAENPPRSDMDFGR 489
P
Sbjct: 514 LQNEPLEGRTARNS 527
>gi|167553298|ref|ZP_02347048.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205322236|gb|EDZ10075.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 589
Score = 111 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 56/475 (11%), Positives = 117/475 (24%), Gaps = 55/475 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F +QL++ AH + I R IG T + L
Sbjct: 142 FDQSFEYQLQWYRAGLAHRIRD------------ILKSRQIGATFYFSREALLRALKTGH 189
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHC 160
+ A S+TQ ++ E + L + + + +
Sbjct: 190 NQIFLSA-SKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAKLIFLGTNSNTAQSH 246
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + + ++ + A
Sbjct: 247 NGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGELFNKGRA 306
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+ + + + + D + D
Sbjct: 307 SAADRIEIDISHSALAGGLLCADGQWRQIVTIEDALASGCTLFDLDQLRRENSDED---F 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPC-----------PDPYAPLIMGCDIAEEGG 329
+ +F F P ++ + P P+ +G D + G
Sbjct: 364 KNLFMCEFVDDKASVF-PFEELQRCMVDVMETWEDFTPFADHPFGSRPVWIGYDPSHTGD 422
Query: 330 DNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
VVL + W D I L EKY + I IDA G
Sbjct: 423 SAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNVEYIGIDATGLGLGV 482
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLK 440
+ A + + +T + +K D + L + + Q+
Sbjct: 483 FQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDVTQSFM 533
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
S++ + + E+ R + A D + M+ P + ++
Sbjct: 534 SIRKTMTSSGRSATYEASRTEEASHADIAWATMHALLNEPLSAGSGMQPKSILEF 588
>gi|21232401|ref|NP_638318.1| phage-related terminase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|21114179|gb|AAM42242.1| phage-related terminase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
Length = 594
Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats.
Identities = 50/434 (11%), Positives = 104/434 (23%), Gaps = 40/434 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-----ETQLKTTLWAEVSKWLSLLP 136
I R +G T A L T + A+ E
Sbjct: 169 ILKSRQVGATFYFAREALIDALTTGRNQIFLSASKAQAHLFRGYMQQFVRETIDETLSGG 228
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ F + + + + + H +
Sbjct: 229 DSIVFPNGAELFFLGTNARTAQGYHGNFYFDEFFWTYGFNELNKVASGMAMHKKWRKTYF 288
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
+ +S + ER +S + D R ++
Sbjct: 289 STPSSMAHEAYTFWTG----ERRNKGKPAAQRIQVDVSHDALAGGRRCQDRAWRQIVNIL 344
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP------ 310
+ + R D + +F S PL +++ +
Sbjct: 345 DAQRRGCDLFDIDELREEYSPDAFANLLMCEFVDD-GASIFPLAMLQPCMVDSWVEWGQD 403
Query: 311 ------CPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNN 358
P + +G D AE G +VVL + + D
Sbjct: 404 YKPFAARPYGDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAA 463
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+I + +Y I ID G+ ++ ++ +T L +
Sbjct: 464 EIERITRRYWVTYIGIDTTGMGSGVAQLVKQFFPNLVTFSYSPE---------VKTRLVL 514
Query: 419 KMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K D + L + + Q+L +++ + + + + R + D + L +
Sbjct: 515 KAFDVIHNGRLEFDAGWTDVAQSLMAIRKTMTASGRQSTFTAGRSEETGHADLAWALFHA 574
Query: 476 FAENPPRSDMDFGR 489
P
Sbjct: 575 LQNEPLEGRTARNS 588
>gi|301386048|ref|ZP_07234466.1| hypothetical protein PsyrptM_25573 [Pseudomonas syringae pv. tomato
Max13]
gi|302060830|ref|ZP_07252371.1| hypothetical protein PsyrptK_12639 [Pseudomonas syringae pv. tomato
K40]
gi|302129770|ref|ZP_07255760.1| hypothetical protein PsyrptN_00140 [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 684
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 63/471 (13%), Positives = 128/471 (27%), Gaps = 62/471 (13%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
M + NP + + + R +G T A V A+
Sbjct: 155 MYGYQKELFAAKQNPLTARIRNILKS-RQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQ 213
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLS---------------LHPAPWYSDVLHCSLG 163
+E+ + + + WF ++ + S
Sbjct: 214 -------SEIFRSYIIAFAQAWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHGH 266
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ Y + + + H + + ++ + RN+ R
Sbjct: 267 VYVDEYFWIRDFEKLNTVASAMATHKKWRKTYFSTPSAVSHQAYPFWQGEKF--RNSKRK 324
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P + K I G D E + Y D D +
Sbjct: 325 AAKDPWPSDKQISAGALCPDGQWR-KVITILDAIAGGCDLFDLEQLQLEY--DDDKFQQL 381
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGGDNTV 333
+F +F L +E + +P P +P+ +G D + D T
Sbjct: 382 FMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRDDATC 440
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
VV+ I W + ++ L E++ I ID G D +
Sbjct: 441 VVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGVFDLV 500
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
RA + + + L +K D ++ + + + + Q ++K
Sbjct: 501 RD---------FYPRATSIHYSLETKNLLVLKAQDTIQGSRIEWDAGWNDIAQAFLTIKR 551
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+G++ + R D + +M+ P ++ G+ Y
Sbjct: 552 -GTTASGQVTYSASRTDATGHADVAWAVMHALQYEP----LNTGKRRRSSY 597
>gi|194289059|ref|YP_002004966.1| bacteriophage p2 gpp capsid protein; terminase, atpase subunit
[Cupriavidus taiwanensis LMG 19424]
gi|193222894|emb|CAQ68899.1| bacteriophage P2 GPP capsid protein; Terminase, ATPase subunit
[Cupriavidus taiwanensis LMG 19424]
Length = 593
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 48/458 (10%), Positives = 110/458 (24%), Gaps = 40/458 (8%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS- 116
FM+ + + E + + + R IG T A TR + A+
Sbjct: 146 FMDSMFDYQRVWYEAGLVERIRNILKS-RQIGATWYFAREAFIDALTRGRNQIFLSASKA 204
Query: 117 ETQLKT---TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
+ + +A+ + + L + + + Y +
Sbjct: 205 QAHVFKHYIIQFAKDAAGVELKGDPLVLPNGATLYFLGTNARTAQSYHGNLYLDEYFWIQ 264
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
R + + + H + + +S + +
Sbjct: 265 RFQELRKVASGMAIHAKWRQTYFSTPSSLAHEAYPFWSGALFNRGRRKDQHVQVDVSHAH 324
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQD 292
+ + D R + + + SD + F
Sbjct: 325 ----LQAGRRCADGQWRQVVTVEDAVRGGCNLF-DLEQLRREYSDADFENLLMCGFIDDT 379
Query: 293 IDSFIPLNIIEEALNREPCPDP----------YAPLIMGCDIAEEGGDNTVVVL------ 336
F ++ ++ + + +G D GGD+ +V+
Sbjct: 380 ASVFPLSMLMRCMVDSWEVWEDFRHWSPRPLGNREVWVGYDPNGGGGDSAALVVVAPPLV 439
Query: 337 -RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+ + D + + E+Y I ID G +
Sbjct: 440 PGGKFRVLEKHQFRGIDYEEQAAAVLKVCERYNVTYIGIDRTGVGDAVYKVVLKTRPEAQ 499
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGE 452
+ +T L +K D + L + + S++ G
Sbjct: 500 GFTYS---------VDVKTGLVLKATDVISKGRLEFDAGWTDFAASFMSIRKTTTAAGGR 550
Query: 453 LAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
+ ++ R + D + M+ A P
Sbjct: 551 VTYQAGRSEETSHADLAWACMHALAHEPIEGVTTTNTS 588
>gi|261340099|ref|ZP_05967957.1| terminase, ATPase subunit [Enterobacter cancerogenus ATCC 35316]
gi|288318026|gb|EFC56964.1| terminase, ATPase subunit [Enterobacter cancerogenus ATCC 35316]
Length = 589
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 61/479 (12%), Positives = 117/479 (24%), Gaps = 71/479 (14%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F +QL + + H + I R IG T A L G
Sbjct: 142 FDQSFDYQLRWHKAGLEHRIRH------------ILKSRQIGATFYFARESLLRALKT-G 188
Query: 108 ISVICLANSETQLK-----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
+ I L+ S+TQ +A + + + + +
Sbjct: 189 QNQIFLSASKTQAYVFRKYIIAFARLVDVDLSGDPIVIGNNGAELIFLGTNSNTAQSHNG 248
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ + + + + + + ++ A
Sbjct: 249 DLYVDEIFWIPNFQKLRKVASGMASQSHLRTTYFSTPST--------------LAHGAYP 294
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGII----------AR 272
FW R S + + + + E +
Sbjct: 295 FWSGELFNRGRSNRDERVDIDISHQALAGGMLCGDGQWRQIVSIEDALAGGCTLFNLDQL 354
Query: 273 YGLDS-DVTRVEVCGQFPQQDIDSFIPLNIIEE---ALNREPCPDPY-------APLIMG 321
+S D R +F F + A+ +P+ P+ +G
Sbjct: 355 KQENSADDFRNLFMCEFVDDKASVFPFEELQRCMVDAMEEWEDFEPFADRPFNWRPVWIG 414
Query: 322 CDIAEEGGDNTV------VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
D + G +V I W D I L EKY D I ID
Sbjct: 415 YDPSHTGDSAGCAVLAPPLVAGGKFRILERHQWKGMDFAAQAEAIRALTEKYTVDYIGID 474
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS-- 433
A G + + +T + +K D + L +
Sbjct: 475 ATGIGQGVYQLVRSFFPAARAIRYTPE---------MKTAMVLKAKDTIRRGCLEYDAGA 525
Query: 434 -GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCP 491
+ Q+ +++ + + E+ R + A D + M+ P +
Sbjct: 526 TDITQSFMAIRKTMTSSGRSATYEASRSEEASHADIAWATMHALLNEPLSAGSGMQSAS 584
>gi|320087122|emb|CBY96890.1| Terminase, ATPase subunit GpP [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 589
Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/475 (11%), Positives = 117/475 (24%), Gaps = 55/475 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F +QL++ AH + I R IG T + L
Sbjct: 142 FDQSFEYQLQWYRAGLAHRIRD------------ILKSRQIGATFYFSREALLRALKTGH 189
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHC 160
+ A S+TQ ++ E + L + + + +
Sbjct: 190 NQIFLSA-SKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAKLIFLGTNSNTAQSH 246
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + + ++ + A
Sbjct: 247 NGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGELFNKGRA 306
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+ + + + + D + D
Sbjct: 307 SAADRIEIDISHSALAGGLLCADGQWRQIVTIEDALAGGCTLFDLDQLRRENSDED---F 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPC-----------PDPYAPLIMGCDIAEEGG 329
+ +F F P ++ + P P+ +G D + G
Sbjct: 364 KNLFMCEFVDDKASVF-PFEELQRCMVDVMETWEDFAPFADHPFGSRPVWIGYDPSHTGD 422
Query: 330 DNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
VVL + W D I L EKY + I IDA G
Sbjct: 423 SAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEAIRRLTEKYNVEYIGIDATGLGLGV 482
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLK 440
+ A + + +T + +K D + L + + Q+
Sbjct: 483 FQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDVTQSFM 533
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
S++ + + E+ R + A D + M+ P + ++
Sbjct: 534 SIRKTMTSSGRSATYEASRTEEASHADIAWATMHALLNEPLSAGSGMQPKSILEF 588
>gi|261248365|emb|CBG26202.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
Length = 589
Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats.
Identities = 55/475 (11%), Positives = 116/475 (24%), Gaps = 55/475 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F +QL++ H + I R IG T + L
Sbjct: 142 FDQSFEYQLQWYRAGLEHRIRD------------ILKSRQIGATFYFSREALLRALKTGH 189
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHC 160
+ A S+TQ ++ E + L + + + +
Sbjct: 190 NQIFLSA-SKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAKLIFLGTNSNTAQSH 246
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + + ++ + A
Sbjct: 247 NGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGELFNKGRA 306
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+ + + + + D + D
Sbjct: 307 SAADRIEIDISHSALAGGLLCADGQWRQIVTIEDALAGGCTLFDLDQLRRENSDED---F 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPC-----------PDPYAPLIMGCDIAEEGG 329
+ +F F P ++ + P P+ +G D + G
Sbjct: 364 KNLFMCEFVDDKASVF-PFEELQRCMVDVMETWEDFAPFADHPFGSRPVWIGYDPSHTGD 422
Query: 330 DNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
VVL + W D I L EKY + I IDA G
Sbjct: 423 SAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNVEYIGIDATGLGLGV 482
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLK 440
+ A + + +T + +K D + L + + Q+
Sbjct: 483 FQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDVTQSFM 533
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
S++ + + E+ R + A D + M+ P + ++
Sbjct: 534 SIRKTMTSSGRSATYEASRTEEASHADIAWATMHALLNEPLSAGSGMQPKSILEF 588
>gi|109302915|ref|YP_654730.1| hypothetical protein F108p19 [Pasteurella phage F108]
gi|73918076|gb|AAZ93654.1| unknown [Pasteurella phage F108]
Length = 603
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 53/442 (11%), Positives = 120/442 (27%), Gaps = 44/442 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ HC + ++ + K R IG T A+ L + A S+
Sbjct: 162 LFDYQKHCRANKHHSVRNILK-----SRQIGATYYFAFEALEDAIFTGDNQIFLSA-SKR 215
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQ------SLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
Q + K + + A + S + Y+ +
Sbjct: 216 QA-EIFKTYIIKMARAYFDVELKGSPIILSNGAELHFLATNANTSQGNSGHVYGDEYAWI 274
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ + H + + +S E + R ++ +
Sbjct: 275 RDFERFNTVSSAMATHKHWRETYFSTPSSKFHPSYAFWSGDMWKEGDPKRANVVFPSFEE 334
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
L + D + + +Y +
Sbjct: 335 LRDG-GRFCPDGTWRYVITIEDALKGGAGVLFDIDALKQKYSKY--AFAQLFMCVWVDDA 391
Query: 293 IDSF-IPLNI---IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVL------R 337
F I + ++ A ++ P+ P + G D A G + V++ +
Sbjct: 392 DSIFNIKKLLKCGVDIAKWKDHNPNDARPFGAREVWGGYDPAHSGDGASFVIVAPPALLK 451
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML-GYHVYR 396
+ + W+ + +I L EKY I IDA G + ++ G
Sbjct: 452 EKYRVLARYQWNGLSYKYQAAQIKQLFEKYNMTYIGIDATGVGYGVYEQVKEFAGRKAVP 511
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
++ + +TE+ +K+ D +E + ++ + +K + +
Sbjct: 512 LVYNPES---------KTEMVLKVHDLVEHEQIEWDENERDIVPSFLMIKHTSTKSGNTM 562
Query: 454 AIESKRVKGAKSTDYSDGLMYT 475
++R + D +
Sbjct: 563 TFVAERTVKTQHADVFFAIANA 584
>gi|294634584|ref|ZP_06713119.1| terminase, ATPase subunit [Edwardsiella tarda ATCC 23685]
gi|291092098|gb|EFE24659.1| terminase, ATPase subunit [Edwardsiella tarda ATCC 23685]
Length = 588
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 56/469 (11%), Positives = 117/469 (24%), Gaps = 52/469 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F +QL++ AH + I R IG T + L
Sbjct: 142 FDQSFEYQLQWYRAGLAHRIRD------------ILKSRQIGATFYFSREALLRALKTGH 189
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHC 160
+ A S+TQ ++ E + L + + + +
Sbjct: 190 NQIFLSA-SKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAKLIFLGTNSNTAQSH 246
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + + ++ + A
Sbjct: 247 NGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGDLFNKGRA 306
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+ + + + + I+ G + + D
Sbjct: 307 SAADRIEIDISHSALAGGLLCADGQWRQIV-TIEDALAGGCTLFDLDQLKRENSADD--F 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP---------YAPLIMGCDIAEEGGDN 331
+ +F F + ++ P+ +G D + G
Sbjct: 364 KNLFMCEFVDDKASVFPFEELQRCMVDALEAWTDVNPYADHPFDRPVWIGYDPSHTGDSA 423
Query: 332 TVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
VVL + W D T I L EKYR D I IDA G
Sbjct: 424 GCVVLAPPAVPGGKFRMLERHQWKGMDFSTQAEAIRALTEKYRVDYIGIDATGIGQGVFQ 483
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSL 442
+ A +L + +T + +K D + L + + + ++
Sbjct: 484 LVRE---------FYPAARELRYNPEVKTAMVLKAKDTIANGRLEYDVSYTDVTASFMAI 534
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCP 491
+ + + ++ R A D + M+ P +
Sbjct: 535 RKTMTASGRSTTYDASRSDEASHADLAWATMHALLNEPLTAGSGRPSSS 583
>gi|323186590|gb|EFZ71927.1| gp33 TerL protein [Escherichia coli 1357]
Length = 503
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 68/507 (13%), Positives = 140/507 (27%), Gaps = 87/507 (17%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG--------EKGTPLEGFSAPRSW 54
+ + NPE L ++ WG + G P+
Sbjct: 26 QRIRQNPEILPVLKQFYRTNP--------AQFIIDWGMTTDPRNIDYGLPVTIPFLLFPK 77
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E++ + N N + R +G + L L + + +
Sbjct: 78 QEEWIHWIMERWSNRENGITEK--------SREMGLSWTAIGLACSLCLFNKEMVIGFGS 129
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E + +T + W + F W + ++ + +
Sbjct: 130 RKEEYVDSTGDPKALFWKAR-----KFVETLPVEFRGSWSEKKHAPYMRVEFPETGAVIK 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + DEA+ L I L+ R I S+ ++
Sbjct: 185 GEAGDNIG-----RGDRTTLYFVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMN 235
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F + + F R+ D ++ + + + E+ +
Sbjct: 236 NPFAQKRH--SGKIPVFTFHWRSDPRKDDEWYHKECEKID-NPVIVAQELDLNYQASAEG 292
Query: 295 SFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT- 351
IP ++ A++ P + D+A+EG D LR G ++ + +WS
Sbjct: 293 ILIPSEWVQAAVDAHIRLGIQPGGQRLGAMDVADEGRDKNACSLRYGILLNDVQEWSGKG 352
Query: 352 -DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY------------------ 392
D+ + K+ GL + + D D + GA +
Sbjct: 353 SDIYDSVVKVFGLCDDFGADEFRFDEDGLGAGVRGDARAINELREAEGICQITATPFRGS 412
Query: 393 ---------HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF-----ASLINHSGLIQN 438
V G+ ++ +F N + + + + I +
Sbjct: 413 GSVFHPENEAVPGDNGKPARLNKDFFVNAKAQGWWHLRKLFRNTFRALQGMEYDPDEIIS 472
Query: 439 LKSLKSFIVPNTGELAIE------SKR 459
+ S + N L +E SK+
Sbjct: 473 ISS----TMENKDRLLMELSQPTWSKK 495
>gi|21243371|ref|NP_642953.1| phage-related terminase [Xanthomonas axonopodis pv. citri str. 306]
gi|21108918|gb|AAM37489.1| phage-related terminase [Xanthomonas axonopodis pv. citri str. 306]
Length = 594
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 52/470 (11%), Positives = 105/470 (22%), Gaps = 57/470 (12%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
+Q I R IG T A L T
Sbjct: 148 VDGCFDYQR-------DWYRAGNERTR------IILKSRQIGATFYFAREALIDALTTGR 194
Query: 108 ISVICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
+ A+ E + F +
Sbjct: 195 NQIFLSASKAQAHLFRGYMQQFVRETIDETLSGGDSIVFPNGAELFFLGTNARTAQGYHG 254
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ + + + H + + +S + +
Sbjct: 255 NFYFDEFFWTYGFNELNKVASGMAMHKKWRKTYFSTPSSMAHEAYTFWTGERRNKGKPAA 314
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI--DPSFHEGIIARYGLDSDVT 280
I + D R ++ + D E + Y D
Sbjct: 315 QRIQIDVSHDA----LAGGRRCQDRAWRQIVNILDAQRRGCDLFDIEELREEYSPD--AF 368
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREP------------CPDPYAPLIMGCDIAEEG 328
+ F S PL +++ + P + +G D AE G
Sbjct: 369 ANLLMCDFVDD-GASIFPLAMLQPCMVDSWVEWGQDYKPFAARPYGDRAVWIGYDPAETG 427
Query: 329 GDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
+VVL + + D +I + +Y I ID G+
Sbjct: 428 DTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAAEIERITRRYWVTYIGIDTTGMGSG 487
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNL 439
++ ++ +T L +K D + L + + Q+L
Sbjct: 488 VAQLVKQFFPNLVTFSYSPE---------VKTRLVLKAFDVIHNERLEFDAGWTDVAQSL 538
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
+++ + + + + R + D + L + P
Sbjct: 539 MAIRKTMTASGRQSTFTAGRSEETGHADLAWALFHALQNEPLEGRTARNS 588
>gi|84623266|ref|YP_450638.1| phage-related terminase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|84367206|dbj|BAE68364.1| phage-related terminase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 594
Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats.
Identities = 49/434 (11%), Positives = 101/434 (23%), Gaps = 40/434 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-----ETQLKTTLWAEVSKWLSLLP 136
I R IG T A L T + A+ E
Sbjct: 169 ILKSRQIGATFYFAREALIDALTTGRNQIFLSASKAQAHLFRGYMQQFVRETIDETLSGG 228
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ F + + + + + H +
Sbjct: 229 DSIVFPNGAELFFLGTNARTAQGYHGNFYFDEFFWTYGFNELNKVASGMAMHKKWRKTYF 288
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
+ +S + + I + D R ++
Sbjct: 289 STPSSMAHEAYTFWTGERRNKGKPAAQRIQIDVSHDA----LAGGRRCQDRAWRQIVNIL 344
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP------ 310
+ + R D + F S PL +++ +
Sbjct: 345 DAQRRGCDLFDIDELREEYSPDAFANLLMCDFVDD-GASIFPLAMLQPCMVDSWVEWGQD 403
Query: 311 ------CPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNN 358
P + +G D AE G +VVL + + D
Sbjct: 404 YKPFAVRPYGDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAA 463
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+I + +Y I ID G+ ++ ++ +T L +
Sbjct: 464 EIERITRRYWVTYIGIDTTGMGSGVAQLVKQFFPNLVTFSYSPE---------VKTRLVL 514
Query: 419 KMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K D + L + + Q+L +++ + + + + R + D + L +
Sbjct: 515 KAFDVIHNGRLEFDAGWTDVAQSLMAIRKTMTASGRQSTFSAGRSEETGHADLAWALFHA 574
Query: 476 FAENPPRSDMDFGR 489
P
Sbjct: 575 LQNEPLEGRTARNS 588
>gi|318603823|emb|CBY25321.1| phage terminase, ATPase subunit [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 257
Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats.
Identities = 37/250 (14%), Positives = 71/250 (28%), Gaps = 31/250 (12%)
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP------- 314
D + + + R +F F + ++ +
Sbjct: 15 DRFDIDQLRRENS--AADFRNLFLCEFVDDKASVFPFEELQACMVDSLVEWEDFAPFAEQ 72
Query: 315 ---YAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
Y P+ MG D + G VV+ I W D I L E
Sbjct: 73 PFNYHPVWMGYDPSHTGDSAGCVVMAPPWVPGGKFRILERHQWKGMDFADQAESIKKLTE 132
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
KY + I IDA G + A ++ + +T + +K D +
Sbjct: 133 KYNVEYIGIDATGIGQGVYQLVR---------NFFPAAREIRYSAEVKTNMVLKAKDLIT 183
Query: 426 FASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPR 482
L + + + +++ + + E+ R + D + M+ P
Sbjct: 184 TGRLEYDISYTDITLSFMAIRKTMTASGRSATYEASRSEEVSHADLAWAAMHAMINEP-L 242
Query: 483 SDMDFGRCPS 492
+ + PS
Sbjct: 243 TAGNGNVTPS 252
>gi|168822412|ref|ZP_02834412.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205341123|gb|EDZ27887.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
Length = 589
Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats.
Identities = 55/475 (11%), Positives = 116/475 (24%), Gaps = 55/475 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F +QL++ H + I R IG T + L
Sbjct: 142 FDQSFEYQLQWYRAGLEHRIRD------------ILKSRQIGATFYFSREALLRALKTGH 189
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHC 160
+ A S+TQ ++ E + L + + + +
Sbjct: 190 NQIFLSA-SKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAKLIFLGTNSNTAQSH 246
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + + ++ + A
Sbjct: 247 NGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGELFNKGRA 306
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+ + + + + D + D
Sbjct: 307 SAADRIEIDISHSALAGGLLCADGQWRQIVTIEDALAGGCTLFDLDQLRRENSDED---F 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPC-----------PDPYAPLIMGCDIAEEGG 329
+ +F F P ++ + P P+ +G D + G
Sbjct: 364 KNLFMCEFVDDKASVF-PFEELQRCMVDVMETWEDFAPFADHPFGSRPVWIGYDPSHTGD 422
Query: 330 DNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
VVL + W D I L EKY + I IDA G
Sbjct: 423 SAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRKLTEKYNVEYIGIDATGLGLGV 482
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLK 440
+ A + + +T + +K D + L + + Q+
Sbjct: 483 FQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDVTQSFM 533
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
S++ + + E+ R + A D + M+ P + ++
Sbjct: 534 SIRKTMTSSGRSATYEASRTEEASHADIAWATMHALLNEPLSAGSGMQPKSILEF 588
>gi|41057355|ref|NP_958058.1| gp3 [Enterobacteria phage PsP3]
gi|37548561|gb|AAN08365.1| gp3 [Enterobacteria phage PsP3]
Length = 589
Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats.
Identities = 56/475 (11%), Positives = 117/475 (24%), Gaps = 55/475 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F +QL++ AH + I R IG T + L
Sbjct: 142 FDQSFEYQLQWYRAGLAHRIRD------------ILKSRQIGATFYFSREALLRALKTGH 189
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHC 160
+ A S+TQ ++ E + L + + + +
Sbjct: 190 NQIFLSA-SKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAKLIFLGTNSNTAQSH 246
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + + ++ + A
Sbjct: 247 NGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGELFNKGRA 306
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+ + + + + D + D
Sbjct: 307 SAADRIEIDISHSALAGGLLCADGQWRQIVTIEDALAGGCTLFDLDQLRRENSDED---F 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPC-----------PDPYAPLIMGCDIAEEGG 329
+ +F F P ++ + P P+ +G D + G
Sbjct: 364 KNLFMCEFVDDKASVF-PFEELQRCMVDVMETWEDFAPFADHPFGSRPVWIGYDPSHTGD 422
Query: 330 DNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
VVL + W D I L EKY + I IDA G
Sbjct: 423 SAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNVEYIGIDATGLGLGV 482
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLK 440
+ A + + +T + +K D + L + + Q+
Sbjct: 483 FQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDVTQSFM 533
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
S++ + + E+ R + A D + M+ P + ++
Sbjct: 534 SIRKTMTSSGRSATYEASRTEEASHADIAWATMHALLNEPLSAGSGMQPKSILEF 588
>gi|114046227|ref|YP_736777.1| hypothetical protein Shewmr7_0720 [Shewanella sp. MR-7]
gi|113887669|gb|ABI41720.1| protein of unknown function DUF264 [Shewanella sp. MR-7]
Length = 602
Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats.
Identities = 58/446 (13%), Positives = 119/446 (26%), Gaps = 53/446 (11%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I R IG T A + A S Q EV + + + +F
Sbjct: 176 ILKSRQIGATYYFAGEAFEQAVLTGDPQIFLSA-SRNQA------EVFRSYIVAIAQEFF 228
Query: 142 EMQSLS--------------LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
E++ + + Y + + + + +
Sbjct: 229 EIELTGNPMVLHTAHGDAELRFLSTNSKTAQSYHGHVYVDEYFWINKFDVLNKLASAMAT 288
Query: 188 HNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
H + + ++ + R + +L P
Sbjct: 289 HKNWRKTYFSTPSTKAHAAYPFWTGDHWRQGKPEREEVEFPTFDQLRDGGRLC---PDKQ 345
Query: 248 WK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI----I 302
W+ I+ G D + + Y D F F ++ +
Sbjct: 346 WRYVVTIEDALAGGCDLFDIDELREEYNGDD--FNNLFMCIFVDDADSVFKFSDLEKCMV 403
Query: 303 EEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKT 351
+ A ++ P P + +G D + + T+VV+ + W
Sbjct: 404 DAARWQDHKPAAPRPFGNREVWLGYDPSRTRDNATLVVVAPGEKKGEKFRVLEKHYWRGM 463
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
+ +I + KYR I +D GA D + L A + +
Sbjct: 464 NFSHHVAEIQKIYAKYRVTYIGVDTTGIGAGVFDSISTLYPR--------EATAIHYSVG 515
Query: 412 RRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
+T L +KM D +E + + + + S++ G + ++ R D
Sbjct: 516 SKTRLVLKMIDVVEGGRIEWDASHKDIAMSCLSIRRTSTDGGGAITFKASRDNVTGHADV 575
Query: 469 SDGLMYTFAENPPRSDMDFGRCPSYQ 494
+ + P + + Q
Sbjct: 576 FFAIAHAVINEPLNYEHKRTSSWAMQ 601
>gi|167991605|ref|ZP_02572704.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205329999|gb|EDZ16763.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
Length = 590
Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/463 (12%), Positives = 115/463 (24%), Gaps = 55/463 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F +QL++ AH + I R IG T + L
Sbjct: 142 FDQSFEYQLQWYRAGLAHRIRD------------ILKSRQIGATFYFSREALLRALKTGH 189
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHC 160
+ A S+TQ ++ E + L + + + +
Sbjct: 190 NQIFLSA-SKTQAY--VFREYIIQFARLVDVDLTGDPIVIGNNGAKLIFLGTNSNTAQSH 246
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + + + ++ + A
Sbjct: 247 NGDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGELFNKGRA 306
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+ + + + + D + D
Sbjct: 307 SAADRIEIDISHSALAGGLLCADGQWRQIVTIEDALAGGCTLFDLDQLRRENSDED---F 363
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPC-----------PDPYAPLIMGCDIAEEGG 329
+ +F F P ++ + P P+ +G D + G
Sbjct: 364 KNLFMCEFVDDKASVF-PFEELQRCMVDVMETWEDFTPFADHPFGSRPVWIGYDPSHTGD 422
Query: 330 DNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
VVL + W D I L EKY + I IDA G
Sbjct: 423 SAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNVEYIGIDATGLGLGV 482
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLK 440
+ A + + +T + +K D + L + + Q+
Sbjct: 483 FQLVR---------SFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDVTQSFM 533
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRS 483
S++ + + E+ R + A D + M+ P +
Sbjct: 534 SIRKTMTSSGRSATYEASRTEEASHADIAWATMHALLNEPLSA 576
>gi|58581337|ref|YP_200353.1| phage-related terminase [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58425931|gb|AAW74968.1| phage-related terminase [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 594
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/434 (11%), Positives = 100/434 (23%), Gaps = 40/434 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-----ETQLKTTLWAEVSKWLSLLP 136
I R IG T A L T + A+ E
Sbjct: 169 ILKSRQIGATFYFAREALIDALTTGRNQIFLSASKAQAHLFRGYMQQFVRETINETLSGG 228
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ F + + + + + H +
Sbjct: 229 DSIVFPNGAELFFLGTNARTAQGYHGNFYFDEFFWTYGFNELNKVASGMAMHKKWRKTYF 288
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
+ +S + + I + D R ++
Sbjct: 289 STPSSMAHEAYTFWTGERRNKGKPAAQRIQIDVSHDA----LAGGRRCQDRAWRQIVNIL 344
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP------ 310
+ + R D + F S L +++ +
Sbjct: 345 DAQRRGCDLFDIDELREEYSPDAFANLLMCDFVDD-GASIFSLAMLQPCMVDSWVEWGQD 403
Query: 311 ------CPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNN 358
P + +G D AE G +VVL + + D
Sbjct: 404 YKPFAVRPYGDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAA 463
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+I + +Y I ID G+ ++ ++ +T L +
Sbjct: 464 EIERITRRYWVTYIGIDTTGMGSGVAQLVKQFFPNLVTFSYSPE---------VKTRLVL 514
Query: 419 KMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K D + L + + Q+L +++ + + + + R + D + L +
Sbjct: 515 KAFDVIHNGRLEFDAGWTDVAQSLMAIRKTMTASGRQSTFSAGRSEETGHADLAWALFHA 574
Query: 476 FAENPPRSDMDFGR 489
P
Sbjct: 575 LQNEPLEGRTARNS 588
>gi|330874284|gb|EGH08433.1| hypothetical protein PSYMP_06646 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 684
Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats.
Identities = 62/460 (13%), Positives = 125/460 (27%), Gaps = 58/460 (12%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
M + NP + + + R +G T A V A+
Sbjct: 155 MYGYQKELFAAKQNPLTARIRNILKS-RQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQ 213
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLS---------------LHPAPWYSDVLHCSLG 163
+E+ + + + WF ++ + S
Sbjct: 214 -------SEIFRSYIIAFAQAWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHGH 266
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ Y + + + H + + ++ + RN+ R
Sbjct: 267 VYVDEYFWIRDFEKLNTVASAMATHKKWRKTYFSTPSAVSHQAYPFWQGEKF--RNSKRK 324
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P + K I G D E + Y D D +
Sbjct: 325 NAKEPWPSDKQISAGALCPDGQWR-KVITILDAIAGGCDLFDLEQLQLEY--DDDKFQQL 381
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGGDNTV 333
+F +F L +E + +P P +P+ +G D + D T
Sbjct: 382 FMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRDDATC 440
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
VV+ I W + ++ L E++ I ID G D +
Sbjct: 441 VVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGVFDLV 500
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
RA + + + L +K D ++ + + + + Q ++K
Sbjct: 501 RD---------FYPRATSIHYSLETKNLLVLKAQDTIQGSRIEWDAGWNDIAQAFLTIKR 551
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+G++ + R D + +M+ P +D
Sbjct: 552 -GTTASGQVTYSASRTDATGHADVAWAVMHALQYEPLNTD 590
>gi|170023192|ref|YP_001719697.1| hypothetical protein YPK_0943 [Yersinia pseudotuberculosis YPIII]
gi|169749726|gb|ACA67244.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
YPIII]
Length = 697
Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/435 (11%), Positives = 106/435 (24%), Gaps = 40/435 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL----KTTLWAEVSKWLSLLPNKHW 140
R IG T A+ L A+ L +A + L +
Sbjct: 184 SRQIGATWYAAFEALEDAILTGNNQAFLSASRPQSLIFRRYIIKFAFELFGIELTGDPIV 243
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + + + H+ I+ +
Sbjct: 244 LSNGAELHFLSTNTNTAQGFCANVYIDEIFWQRGFTQLKNVAAAIATHSYLRRTYISTPS 303
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
+ T + R + + + G + + D
Sbjct: 304 AKTHQAYPFWSGDEWRKGKKERENVTFPSFAEMQG--GVMCPDNHWRFITTIEDAIAGGA 361
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY----- 315
E + G F F + +E+ L + +
Sbjct: 362 HILMDIEELREENGE--SAFNQLYMCLFVDTGDCVFR-FDQLEKCLVTVSNWEDHDVNAA 418
Query: 316 -----APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLV 364
+ G D A G + V++ + H+ W + +I +
Sbjct: 419 RPFGNREVWAGYDPARSGDTASFVLVAPPQADGEPFRVLHIETWHGFAFKYQVGRIKEYM 478
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLG-YHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
+Y I ID+ G C+ ++ V ++ + + L +KM D
Sbjct: 479 ARYNITHIGIDSTGIGGPVCELVQEFARREVTQIHYSPESKNR---------LVMKMIDL 529
Query: 424 LEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+E + I + + +++ G + + R D + + P
Sbjct: 530 VEHKRIAWDIEDKSIGASFMAIRHTTTKMGGAMTFVADRSADTGHADRFFAIAHAVINEP 589
Query: 481 --PRSDMDFGRCPSY 493
G +
Sbjct: 590 INNERKRKSGWAKRF 604
>gi|186896884|ref|YP_001873996.1| hypothetical protein YPTS_3586 [Yersinia pseudotuberculosis PB1/+]
gi|186699910|gb|ACC90539.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
PB1/+]
Length = 595
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/473 (12%), Positives = 128/473 (27%), Gaps = 63/473 (13%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98
G + LE F+ E + + + ++ + K R IG T A+
Sbjct: 138 GIQQEELELFAG------ETLFFYQQYLRANKHHAIRNILK-----SRQIGATWYFAFEA 186
Query: 99 LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS----------- 147
L + A S Q EV + + + +F +
Sbjct: 187 LEDAIMSGDPQIFLSA-SRAQA------EVFRSYIVNIAQQFFGVTLTGNPIRLSNGAEL 239
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ + S + Y + + + H+ + + ++ T
Sbjct: 240 RFLSTNKNTAQSYSGHLYCDEYLWVPNFAKLNEVASAMATHDKWRTTYFSTPSAKTHQGY 299
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE 267
+ + R I + ++ G + + E
Sbjct: 300 PFWTGEEWKQGDKQRSKITFPEFD--EYRDGGRLCPDGQWRYVITLENAIDGGFNLADIE 357
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA---LNREPCPDPYAPL------ 318
+ +Y D+ + F F +++E+ + D AP
Sbjct: 358 RLRNKYNRDT--FNMLYMCVFVDSGDSVF-KFHMLEKCGVDIEMWQDHDFSAPRPFGNRE 414
Query: 319 -IMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
G D A G +T V++ + F W + N+I L ++Y
Sbjct: 415 VWGGFDPARSGDTSTFVIIAPPQFEGERFRVLATFYWQGLNFNYQANQIKELFQRYNMTY 474
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLI 430
I +D G + ++ R + L +KM D +E L
Sbjct: 475 IGVDITGIGNGVFELVQ---------NFAMRQAVAIHYGLESKNRLVMKMVDVIESQRLE 525
Query: 431 NHSG---LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + +++ G + + R K D + + P
Sbjct: 526 WDAEAKEIPASFLAIRRTSTAKGGGMTFVADRTKETGHADVFFAIAHAIDNEP 578
>gi|328952976|ref|YP_004370310.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
11109]
gi|328453300|gb|AEB09129.1| hypothetical protein Desac_1270 [Desulfobacca acetoxidans DSM
11109]
Length = 466
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 75/454 (16%), Positives = 139/454 (30%), Gaps = 70/454 (15%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ +F+ + + R GK+T A L L PG +
Sbjct: 27 PDPWQQDFL--------------VSRPEQALLLCSRQSGKSTSAAALALHEALFHPGALI 72
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ L+ S Q + L+ + + LP+ S + SL +
Sbjct: 73 LLLSPSLRQSQE-LFRKAAGLYQRLPHAPAACRT--SALRLEFDHGSRIISLPGQEETIR 129
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
++ DEA+ PD + + L + S P
Sbjct: 130 GFS-----------------EVRLLVIDEAALVPDELYYAVRPMLAV--SRGRLTALSTP 170
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
G FY + + D W+R+ I I F + L + R E +F
Sbjct: 171 AGKRGWFYHCYTEGGDQWQRYTIPATQCPRISADFL--AAEQRSLPAAWFRAEYFCEF-G 227
Query: 291 QDIDSFIPLNIIEEALNREPCP--------DPYAPLIMGCDIAEEGGDNTVVVLRRGP-- 340
+ + P ++++ A + P P +G D+ + + + ++ R P
Sbjct: 228 EAANQLFPAHLLQTAQCSQVSPLFAEITPSPPTGTFFIGLDLGQSQDYSALTIIHRSPAL 287
Query: 341 -----VIEHLFDWS-KTDLRTTNNKISGLVEK---YRPDAIIIDANNTGARTCDYLEMLG 391
+ HL + +T ++ L+++ +I+D GA D L G
Sbjct: 288 PDPPCHLRHLQRFPLRTPYPDIVRQVRELLQQPQIGPNPLLIVDKTGVGAPVVDMLTQAG 347
Query: 392 YHVYRVLGQKRAVDLEFCRNRR---TELHVKMADWLEFA------SLINHSGLIQNLKSL 442
+ Y V + R+ R +L + L+ +L LI L++
Sbjct: 348 MNPYAVTIHGGEAVSQNGRDLRLPQRDLIANLQVALQTGSLKLAPALPQLPLLIHELENF 407
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
+ +G + D L
Sbjct: 408 -HLTISASGRERYAAGPD--GPHDDLVFSLALAL 438
>gi|289628558|ref|ZP_06461512.1| hypothetical protein PsyrpaN_26063 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289648058|ref|ZP_06479401.1| hypothetical protein Psyrpa2_09957 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330870325|gb|EGH05034.1| hypothetical protein PSYAE_24348 [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 684
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/460 (13%), Positives = 124/460 (26%), Gaps = 58/460 (12%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
M + NP + + + R +G T A V A+
Sbjct: 155 MYGYQKELFAAKQNPLTARIRNILKS-RQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQ 213
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLS---------------LHPAPWYSDVLHCSLG 163
+E+ + + + WF ++ + S
Sbjct: 214 -------SEIFRSYIIAFAQSWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHGH 266
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ Y + + + H + + ++ + RN+ R
Sbjct: 267 VYVDEYFWIRDFEKLNTVASAMATHKKWRKTYFSTPSAVSHQAYPFWQGEKF--RNSKRK 324
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P + K I G D E + Y D +
Sbjct: 325 AAKDPWPSDKQISAGALCPDGQWR-KVITILDAIAGGCDLFDLEQLQLEYDEDK--FQQL 381
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGGDNTV 333
+F +F L +E + +P P +P+ +G D + D T
Sbjct: 382 FMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRDDATC 440
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
VV+ I W + ++ L E++ I ID G D +
Sbjct: 441 VVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGVFDLV 500
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
RA + + + L +K D ++ + + + + Q ++K
Sbjct: 501 RD---------FYPRATSIHYSLETKNLLVLKAQDTIQGSRIEWDAGWNDIAQAFLTIKR 551
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+G++ + R D + +M+ P +D
Sbjct: 552 -GTTASGQVTYSASRTDATGHADVAWAVMHALQYEPLNTD 590
>gi|333010190|gb|EGK29625.1| phage terminase large subunit domain protein [Shigella flexneri
K-272]
gi|333021147|gb|EGK40404.1| phage terminase large subunit domain protein [Shigella flexneri
K-227]
Length = 235
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 57/211 (27%), Gaps = 45/211 (21%)
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDA 371
+P +G D+A+ G D V R G V+ +W + + R
Sbjct: 10 EPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREAD 69
Query: 372 IIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRA------------VDLEFC 409
I+ D+ GA + V A + +F
Sbjct: 70 IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFF 129
Query: 410 RNRRTELHVKMAD-------WLEFASLINHSGLIQ------------NLKSLKSFIVPNT 450
N + + +AD + LI +
Sbjct: 130 ANLKAQAWWLVADRFRNTFNAINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDFDRN 189
Query: 451 GELAIESKR---VKGAKSTDYSDGLMYTFAE 478
G + +ESK+ + S + +D + FA
Sbjct: 190 GRVMVESKKDLAKREIPSPNVADAFIMAFAP 220
>gi|323188196|gb|EFZ73489.1| terminase, ATPase subunit [Escherichia coli RN587/1]
Length = 594
Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/470 (12%), Positives = 116/470 (24%), Gaps = 52/470 (11%)
Query: 55 QLEFMEVV--------DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
Q E ++ + H + I+ R IG T
Sbjct: 137 QAEKLKQLFLDGLYPHQKHWYRAGLEHRIRD----INKSRQIGATMFFGREGFMDAVESG 192
Query: 107 GISVICLANSE--TQLKTTL--WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
+ A+ Q + + +A + H S
Sbjct: 193 RNQIFLSASKAQAHQFRQYIVDFAREADVELKGEVIHLPHNDSRMYFLGTNARTAQTYHG 252
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ Y + R R + + + +S T + +
Sbjct: 253 NLYLDEYFWIHRFLELRRNAAGMASQKRWRQTYFSTPSSITHEAYKFWTGQLFNKGRPKS 312
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
I R W++ ++ +G D E + +
Sbjct: 313 EQIRLDISHRALSAGRLC---EDGQWRQIVTVEDAINQGYDLFDLEQLRLENSPEE--FA 367
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAP----------LIMGCDIAEEGGD 330
QF F PL++++ + + D Y P + +G D A G
Sbjct: 368 NLFMCQFIDDTASVF-PLSMLQGCMVDSWEVWDDYKPFALRPLGERSVWVGYDPALSGDS 426
Query: 331 NTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
VV+ + W D I + E+Y I ID G
Sbjct: 427 AGCVVVAPPVIEGGKFRVIEKHQWHGMDFAAQAENIRKITERYNVTYIGIDVTGIGHGVH 486
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKS 441
++ V + L +K D + L + L Q +
Sbjct: 487 QLVKQFFPAVQAFSYSPE---------VKQRLVLKTLDVVRKHRLEFDAGWTDLAQAFMA 537
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCP 491
++ + P+ ++ E+ R + D + M+ P S
Sbjct: 538 IRKTLTPSGRQVTFEASRSEEVSHADLAWACMHAIINEPLESSGGANSGR 587
>gi|325926090|ref|ZP_08187451.1| hypothetical protein XPE_1415 [Xanthomonas perforans 91-118]
gi|325928218|ref|ZP_08189424.1| hypothetical protein XPE_3475 [Xanthomonas perforans 91-118]
gi|325541407|gb|EGD12943.1| hypothetical protein XPE_3475 [Xanthomonas perforans 91-118]
gi|325543435|gb|EGD14857.1| hypothetical protein XPE_1415 [Xanthomonas perforans 91-118]
Length = 587
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/468 (10%), Positives = 103/468 (22%), Gaps = 53/468 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
+Q I R IG T A L T
Sbjct: 141 VDGCFDYQR-------DWYRAGNERTR------IILKSRQIGATFYFAREALIDALTTGR 187
Query: 108 ISVICLANS-----ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
+ A+ E + F +
Sbjct: 188 NQIFLSASKAQAHLFRGYMQQFVRETIDETLSGGDSIVFPNGAELFFLGTNARTAQGYHG 247
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ + + + H + + +S + +
Sbjct: 248 NFYFDEFFWTYGFNELNKVASGMAMHKKWRKTYFSTPSSMAHEAYTFWTGERRNKGKPAA 307
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
I + D R ++ + + R D
Sbjct: 308 QRIQIDVSHDA----LAGGRRCQDRAWRQIVNILDAQRRGCDLFDIDELREEYSPDAFAN 363
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREP------------CPDPYAPLIMGCDIAEEGGD 330
+ F S PL +++ + P + +G D AE G
Sbjct: 364 LLMCDFVDD-GASIFPLAMLQPCMVDSWVEWGQEYKPFAARPYGDRAVWIGYDPAETGDT 422
Query: 331 NTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+VVL + + D +I + +Y I ID G+
Sbjct: 423 AGLVVLAPPQQPGGKFRLLERIQFRGMDFAKQAAEIERITRRYWVTYIGIDTTGMGSGVA 482
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKS 441
++ ++ +T L +K D + L + + Q+L +
Sbjct: 483 QLVKQFFPNLVTFSYSPE---------VKTRLVLKAFDVIHNERLEFDAGWTDVAQSLMA 533
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
++ + + + + R + D + L + P
Sbjct: 534 IRKTMTASGRQSTFTAGRSEETGHADLAWALFHALQNEPLEGRTARNS 581
>gi|330985172|gb|EGH83275.1| hypothetical protein PLA107_09108 [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 684
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 62/460 (13%), Positives = 125/460 (27%), Gaps = 58/460 (12%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
M + NP + + + R +G T A V A+
Sbjct: 155 MYGYQKELFAAKQNPLTARIRNILKS-RQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQ 213
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLS---------------LHPAPWYSDVLHCSLG 163
+E+ + + + WF ++ + S
Sbjct: 214 -------SEIFRSYIIAFAQAWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHGH 266
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ Y + + + H + + ++ + RN+ R
Sbjct: 267 VYVDEYFWIRDFEKLNTVASAMATHKKWRKTYFSTPSAVSHQAYPFWQGEKF--RNSKRK 324
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P + K I G D E + Y D D +
Sbjct: 325 AAKDPWPSDKQISAGALCPDGQWR-KVITILDAIAGGCDLFDLEQLQLEY--DDDKFQQL 381
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGGDNTV 333
+F +F L +E + +P P +P+ +G D + D T
Sbjct: 382 FMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRDDATC 440
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
VV+ I W + ++ L E++ I ID G D +
Sbjct: 441 VVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGVFDLV 500
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
RA + + + L +K D ++ + + + + Q ++K
Sbjct: 501 RD---------FYPRATSIHYSLETKNLLVLKAQDTIQGSRIEWDAGWNDIAQAFLTIKR 551
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+G++ + R D + +M+ P +D
Sbjct: 552 -GTTASGQVTYSASRTDATGHADVAWAVMHALQYEPLNTD 590
>gi|330967816|gb|EGH68076.1| hypothetical protein PSYAC_24858 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 774
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/460 (13%), Positives = 124/460 (26%), Gaps = 58/460 (12%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
M + NP + + + R +G T A V A+
Sbjct: 155 MYGYQKELFAAKQNPLTARIRNILKS-RQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQ 213
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLS---------------LHPAPWYSDVLHCSLG 163
+E+ + + + WF ++ + S
Sbjct: 214 -------SEIFRSYIIAFAQSWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHGH 266
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ Y + + + H + + ++ + RN+ R
Sbjct: 267 VYVDEYFWIRDFEKLNTVASAMAPHKKWRKTYFSTPSAVSHQAYPFWQGEKF--RNSKRK 324
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P + K I G D E + Y D +
Sbjct: 325 AAKDPWPSDKQISAGALCPDGQWR-KVITILDAISGGCDLFDLEQLQLEYDEDK--FQQL 381
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGGDNTV 333
+F +F L +E + +P +P+ +G D + D T
Sbjct: 382 FMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRLYGNSPVWIGYDPSRTRDDATC 440
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
VV+ I W + ++ L E++ I ID G D +
Sbjct: 441 VVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGVFDLV 500
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
RA + + + L +K D ++ + + + + Q ++K
Sbjct: 501 RD---------FYPRATSIHYSLETKNLLVLKAQDTIQGSRIEWDAGWNDIAQAFLTIKR 551
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
N+G++ + R D + +M+ P +D
Sbjct: 552 -GTTNSGQVTYSASRTDATGHADVAWAIMHALQYEPLNTD 590
>gi|170023146|ref|YP_001719651.1| hypothetical protein YPK_0897 [Yersinia pseudotuberculosis YPIII]
gi|169749680|gb|ACA67198.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
YPIII]
Length = 595
Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats.
Identities = 59/473 (12%), Positives = 127/473 (26%), Gaps = 63/473 (13%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98
G + LE F+ E + + + ++ + K R IG T A+
Sbjct: 138 GIQQEELELFAG------ETLFFYQQYLRANKHHAIRNILK-----SRQIGATWYFAFEA 186
Query: 99 LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS----------- 147
L + A S Q EV + + + +F +
Sbjct: 187 LEDAIMSGDPQIFLSA-SRAQA------EVFRSYIVNIAQQFFGVTLTGNPIRLSNGAEL 239
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ + S + Y + + + H+ + + ++ T
Sbjct: 240 RFLSTNKNTAQSYSGHLYCDEYLWVPNFAKLNEVASAMATHDKWRTTYFSTPSAKTHQGY 299
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE 267
+ + R I + ++ G + + E
Sbjct: 300 PFWTGEEWKQGDKQRSKITFPEFD--EYRDGGRLCPDGQWRYVITLEDAIDGGFNLADIE 357
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA---LNREPCPDPYAPL------ 318
+ +Y D+ + F F +++E+ + D AP
Sbjct: 358 RLRNKYNRDT--FNMLYMCVFVDSGDSVF-KFHMLEKCGVDIEMWQDHDFSAPRPFGNRE 414
Query: 319 -IMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
G D A G +T ++ + F W + N+I L ++Y
Sbjct: 415 VWGGFDPARSGDTSTFAIIAPPQFEGERFRVLVTFYWQGLNFNYQANQIKELFQRYNMTY 474
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLI 430
I +D G + ++ R + L +KM D +E +
Sbjct: 475 IGVDITGIGNGVFELVQ---------NFAMRQAVAIHYGLESKNRLVMKMIDVIESQRIE 525
Query: 431 NHSG---LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + +++ G + + R K D + + P
Sbjct: 526 WDAEAKEIPASFLAIRRTSTAKGGGMTFVADRTKETGHADVFFAIAHAIDNEP 578
>gi|331017153|gb|EGH97209.1| hypothetical protein PLA106_13994 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 684
Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/460 (13%), Positives = 125/460 (27%), Gaps = 58/460 (12%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
M + NP + + + R +G T A V A+
Sbjct: 155 MYGYQKELFAAKQNPLTARIRNILKS-RQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQ 213
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLS---------------LHPAPWYSDVLHCSLG 163
+E+ + + + WF ++ + S
Sbjct: 214 -------SEIFRSYIIAFAQAWFGLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHGH 266
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ Y + + + H + + ++ + RN+ R
Sbjct: 267 VYVDEYFWIRDFEKLNTVASAMATHKKWRKTYFSTPSAVSHQAYPFWQGEKF--RNSKRK 324
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
P + K I G D E + Y D D +
Sbjct: 325 AAKDPWPSDKQISAGALCPDGQWR-KVITILDAIAGGCDLFDLEQLQLEY--DDDKFQQL 381
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNR----------EPCPDPYAPLIMGCDIAEEGGDNTV 333
+F +F L +E + +P P +P+ +G D + D T
Sbjct: 382 FMCKFIDSSQSAF-SLADLERCYSDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRDDATC 440
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
VV+ I W + ++ L E++ I ID G D +
Sbjct: 441 VVIAPPLENGGKFRILEKHSWRGQSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGVFDLV 500
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
RA + + + L +K D ++ + + + + Q ++K
Sbjct: 501 RD---------FYPRATSIHYSLETKNLLVLKAQDTIQGSRIEWDAGWNDIAQAFLTIKR 551
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+G++ + R D + +M+ P +D
Sbjct: 552 -GTTASGQVTYSASRTDATGHADVAWAVMHALQYEPLNTD 590
>gi|53717814|ref|YP_106800.1| phage terminase, ATPase subunit [Burkholderia pseudomallei K96243]
gi|52208228|emb|CAH34159.1| phage terminase, ATPase subunit [Burkholderia pseudomallei K96243]
Length = 589
Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/464 (9%), Positives = 108/464 (23%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 143 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 197
Query: 116 S-ETQLKTTLWAEVSKW---LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + + ++ + L + + Y
Sbjct: 198 KAQAHVFKQYITQFARAAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 257
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + G R + +
Sbjct: 258 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFW-SGAHANRGRAAGERIQIDTS 316
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + G D + + Y + + QF
Sbjct: 317 HEALVRGMLCEDAQWRQIV-TVLDAMAGGCDLFDIDELRREYSAEE--FANLLMCQFIDD 373
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 374 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 433
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 434 VDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 493
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 494 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 544
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 545 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 588
>gi|145639505|ref|ZP_01795109.1| putative phage gene [Haemophilus influenzae PittII]
gi|145271296|gb|EDK11209.1| putative phage gene [Haemophilus influenzae PittII]
Length = 629
Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/442 (11%), Positives = 114/442 (25%), Gaps = 44/442 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ H + ++ + K R IG T ++ L + A S+
Sbjct: 185 LFDYQKHIRANKHHDVRNILK-----SRQIGATYYFSFEALEDAIFSGDNQIFLSA-SKR 238
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQ------SLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
Q + K + + + S + Y+ +
Sbjct: 239 QA-EIFKNYIVKMAREYFGVELTGNPIILSNGAELHFLSTNKNTSQGNSGHVYGDEYAWI 297
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ + H + + +S + + + + R +
Sbjct: 298 RDFQRFNDVASAMATHAKWRETYFSTPSSKFHESYSFWSGDNWRDGDPKRKNVPFPTFAE 357
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
L + + D E + RY +
Sbjct: 358 LRDG-GRLCPDGQWRYVVTIEDALKGGAGTLFNIEKLKQRYSKY--AFNQLYMCVWIDDA 414
Query: 293 IDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVLR------ 337
F + ++ + ++ P P + G D A G + V++
Sbjct: 415 DSIFTVHQLLKCGVDISKWKDFNPKADRPFGDREVWGGFDPAHSGDGASFVIIAPPALPS 474
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
+ + W+ N+I L EKY I IDA G + ++
Sbjct: 475 EKYRVLARYQWNGLSYVYQANQIRALYEKYNMTYIGIDATGVGYGVYELVKE-------- 526
Query: 398 LGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
+RA +T + +K+ D +E + ++ + +K + +
Sbjct: 527 -FARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSESELDIVPSFLMIKHQSTKSGNTM 585
Query: 454 AIESKRVKGAKSTDYSDGLMYT 475
++R + D +
Sbjct: 586 TFTAERTVKTQHADVFFAICNA 607
>gi|134288710|ref|YP_001111154.1| gp4, phage terminase, ATPase subunit [Burkholderia phage phiE12-2]
gi|134132095|gb|ABO60770.1| gp4, phage terminase, ATPase subunit [Burkholderia phage phiE12-2]
Length = 601
Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/464 (9%), Positives = 108/464 (23%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 155 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 209
Query: 116 S-ETQLKTTLWAEVSKW---LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + + ++ + L + + Y
Sbjct: 210 KAQAHVFKQYITQFARAAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 269
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + G R + +
Sbjct: 270 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFW-SGAHANRGRAAGERIQIDTS 328
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + G D + + Y + + QF
Sbjct: 329 HEALVRGMLCEDAQWRQIV-TVLDAMAGGCDLFDIDELRREYSAEE--FANLLMCQFIDD 385
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 386 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 445
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 446 VDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 505
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 506 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 556
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 557 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 600
>gi|260582917|ref|ZP_05850701.1| terminase ATPase subunit [Haemophilus influenzae NT127]
gi|260094017|gb|EEW77921.1| terminase ATPase subunit [Haemophilus influenzae NT127]
Length = 593
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 62/437 (14%), Positives = 126/437 (28%), Gaps = 43/437 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET--QLKTTLWAEVSKW--LSLLPN 137
I R IG T A T + A+ + Q ++ + + + L
Sbjct: 168 ILKSRQIGATYYFAHEAFIDALTTGHNQIFLSASKKQALQFRSYIVNYAKQTADVELKGE 227
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + + + Y + + + Y +
Sbjct: 228 TIKLPNGAELIFLGTNSATAQSYHGNLYFDEVFWVPKFYVMRKVASGMAAQKMYRQTYFS 287
Query: 198 DEASGTPDVINLGILGFLTE--RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
+ + + I S+ SGK WK+
Sbjct: 288 TPTTIAHPAYAFFSGKAFNRNRAKSEKIEIDISHENLKSGKLCADR-----QWKQIVSIY 342
Query: 256 RTVEGIDPSF-HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+EG F + +IA + QF + +F ++ ++
Sbjct: 343 DAMEGGCNLFNIDDLIAENSKEE--FEQLFLCQFADDNSSAFKFSDLQLCQVDSLEEWHD 400
Query: 315 YAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNN 358
Y P + +G D A G +V++ + H + D T +
Sbjct: 401 YKPFYQRPFGNREVWLGYDPAFTGDRAALVIVAPPKVEGGDYRVLHKQTFHGMDYETQAS 460
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+I + Y I+ID G+ + A LE+ + + E+ +
Sbjct: 461 RIKQFCDDYNVTRIVIDKTGMGSGVYQEVR---------KFYPMAQGLEYNADLKNEMVL 511
Query: 419 KMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K + ++ L S ++ + ++K + TG++ S R + A D S +M
Sbjct: 512 KTQNLIQKRRLKFDSGDNDIVSSFMTVKK-RITGTGKITYVSDRSEDASHGDLSWAIMNC 570
Query: 476 FAENPPRSDMDFGRCPS 492
P D S
Sbjct: 571 ILNVPYGLGGDVSSNKS 587
>gi|254192775|ref|ZP_04899210.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
gi|254197102|ref|ZP_04903525.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
gi|169649529|gb|EDS82222.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
gi|169653844|gb|EDS86537.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
Length = 601
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 45/464 (9%), Positives = 108/464 (23%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 155 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 209
Query: 116 S-ETQLKTTLWAEVSKW---LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + + ++ + L + + Y
Sbjct: 210 KAQAHVFKQYITQFARAAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 269
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + G R + +
Sbjct: 270 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFW-SGAHANRGRAAGERIQIDTS 328
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + G D + + Y + + QF
Sbjct: 329 HEALVRGMLCEDAQWRQIV-TVLDAMAGGCDLFDIDELRREYSAEE--FANLLMCQFIDD 385
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 386 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 445
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 446 VDDGAFRVLERHQFRGNDFEEQATAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 505
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 506 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 556
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 557 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 600
>gi|254183934|ref|ZP_04890525.1| putative terminase, ATPase subunit [Burkholderia pseudomallei 1655]
gi|184214466|gb|EDU11509.1| putative terminase, ATPase subunit [Burkholderia pseudomallei 1655]
Length = 589
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 45/464 (9%), Positives = 108/464 (23%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 143 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 197
Query: 116 S-ETQLKTTLWAEVSKW---LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + + ++ + L + + Y
Sbjct: 198 KAQAHVFKQYITQFAREAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 257
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + G R + +
Sbjct: 258 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFW-SGAHANRGRAAGERIQIDTS 316
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + G D + + Y + + QF
Sbjct: 317 HEALVRGMLCEDAQWRQIV-TVLDAMAGGCDLFDIDELRREYSAEE--FANLLMCQFIDD 373
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 374 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 433
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 434 IDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 493
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 494 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 544
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 545 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 588
>gi|254197041|ref|ZP_04903465.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
gi|169653784|gb|EDS86477.1| putative terminase, ATPase subunit [Burkholderia pseudomallei S13]
Length = 576
Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/464 (9%), Positives = 108/464 (23%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 130 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 184
Query: 116 S-ETQLKTTLWAEVSKW---LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + + ++ + L + + Y
Sbjct: 185 KAQAHVFKQYITQFARAAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 244
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + G R + +
Sbjct: 245 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFW-SGAHANRGRAAGERIQIDTS 303
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + G D + + Y + + QF
Sbjct: 304 HEALVRGMLCEDAQWRQIV-TVLDAMAGGCDLFDIDELRREYSAEE--FANLLMCQFIDD 360
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 361 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 420
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 421 VDDGAFRVLERHQFRGNDFEEQATAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 480
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 481 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 531
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 532 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 575
>gi|330939345|gb|EGH42730.1| hypothetical protein PSYPI_10145 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 650
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 60/437 (13%), Positives = 119/437 (27%), Gaps = 57/437 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I R +G T A V A+ +E+ + + + WF
Sbjct: 177 ILKSRQVGLTYYFAGEAFMDAVLTGDNQVFLSASRAQ-------SEIFRSYIIAFAQAWF 229
Query: 142 EMQSLS---------------LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
++ + S + Y + + +
Sbjct: 230 GLELTGNPIVLSKDGKPWAELRFLSTNSSTAQGHHGHVYVDEYFWIRDFEKLNTVASAMA 289
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
H + + ++ + RN+ R P +
Sbjct: 290 THKKWRKTYFSTPSAVSHQAYPFWQGEKF--RNSKRKAAKDPWPSDKQISAGALCPDGQW 347
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
K I G D E + Y D D + +F +F L +E
Sbjct: 348 R-KVITILDAIAGGCDLFDLEQLQLEY--DDDKFQQLFMCKFIDSSQSAF-SLADLERCY 403
Query: 307 NR----------EPCPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSK 350
+ +P P +P+ +G D + D T VV+ I W
Sbjct: 404 SDLSLWADFDPDDPRPYGNSPVWIGYDPSRTRDDATCVVIAPPLENGGKFRILEKHSWRG 463
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCR 410
+ ++ L E++ I ID G D + RA + +
Sbjct: 464 QSFKYQAEQVKKLTERFNVQHIGIDTTGIGYGVFDLVRD---------FYPRATSIHYSL 514
Query: 411 NRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD 467
+ L +K D ++ + + + + Q ++K +G++ + R D
Sbjct: 515 ETKNLLVLKAQDTIQGSRIEWDAGWNDIAQAFLTIKR-GTTASGQVTYSASRTDATGHAD 573
Query: 468 YSDGLMYTFAENPPRSD 484
+ +M+ P +D
Sbjct: 574 VAWAVMHALQYEPLNTD 590
>gi|238762068|ref|ZP_04623041.1| terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
gi|238699796|gb|EEP92540.1| terminase, ATPase subunit [Yersinia kristensenii ATCC 33638]
Length = 595
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 59/473 (12%), Positives = 128/473 (27%), Gaps = 63/473 (13%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98
G + LE F+ E + + + ++ + K R IG T ++
Sbjct: 138 GIQQEELELFAG------ETLFFYQQYLRANKHHAIRNILK-----SRQIGATWYFSFEA 186
Query: 99 LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS----------- 147
L + A S Q EV + + + +F +
Sbjct: 187 LEDAIISGNPQIFLSA-SRAQA------EVFRSYIVNIAQQFFGVTLTGNPIRLSNGAEL 239
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ + S + Y + + + H+ + + ++ T
Sbjct: 240 RFLSTNKNTAQSYSGHLYCDEYLWVPNFAKLNEAASAMATHDKWRTTYFSTPSAKTHQGY 299
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE 267
+ + R I + ++ G + + E
Sbjct: 300 PFWTGDEWKQGDKQRSKITFPEFD--EYRDGGRLCPDGQWRYVITLEDAIDGGFNLANIE 357
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA---LNREPCPDPYAPL------ 318
+ +Y D+ + F F +++E+ + D AP
Sbjct: 358 RLRNKYNRDT--FNMLYMCVFVDSGDSVF-KFHMLEKCGVDIEMWQDHDFSAPRPFGNRE 414
Query: 319 -IMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
G D A G +T V++ + F W + N+I L ++Y
Sbjct: 415 VWGGFDPARSGDTSTFVIIAPPQFEGERFRVLATFYWQGLNFNYQANQIKELFQRYNMTY 474
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASLI 430
I +D G + ++ R + L +KM D +E +
Sbjct: 475 IGVDITGIGNGVFELVQ---------NFAMRQAVAIHYGLESKNRLVMKMVDVIESQRIE 525
Query: 431 NHSG---LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + + +++ G + + R K D + + P
Sbjct: 526 WDAEAKEIPASFLAIRRTSTAKGGGMTFVADRTKETGHADVFFAIAHAIDNEP 578
>gi|323527775|ref|YP_004229928.1| bacteriophage terminase ATPase subunit [Burkholderia sp. CCGE1001]
gi|323384777|gb|ADX56868.1| bacteriophage terminase, ATPase subunit [Burkholderia sp. CCGE1001]
Length = 588
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 112/452 (24%), Gaps = 40/452 (8%)
Query: 55 QLEFMEVVDAHCLNSVNNPNP--EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
Q +E + I R IG T A L +
Sbjct: 135 QDRLLEAFRDSLFDYQKVWLRNGHQRTRNILKSRQIGATWYFAREALADAIESGRNQIFL 194
Query: 113 LANS-ETQLKTTLWAEVSKW---LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
A+ + + + ++ + L + +++
Sbjct: 195 SASKAQAHVFRQYITQFARQAADVELTGDPIVLPNEAILYFLGTNARTAQSYHGNFYFDE 254
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
Y + R + + + H+ + + +S + + A +
Sbjct: 255 YFWVPRFKELNKVASGMAMHSHWRKTYFSTPSSIGHEAYTFWSGEHINRGRAKADRVHFE 314
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQ 287
+ + +D + QI T + SD + Q
Sbjct: 315 VTHKALARGRLC-----EDAQWRQIVTVEDAARAGCNLFNLDELRREYSDEEYANLLMCQ 369
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVVL- 336
F F N+ ++ Y P + +G D A G VV+
Sbjct: 370 FIDDTASIFTLANLQRCMVDSWELWADYKPLAARPFAWHPVWVGYDPALSGDSAGCVVVA 429
Query: 337 -----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
+ W D I + E+Y + ID G ++
Sbjct: 430 PPMVEGGPFRVLEKHQWRGLDFEAQAQSIKEITERYNVAYMAIDTTGIGQGVYQLVKQFY 489
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVP 448
V + L +K + A L + + ++K +
Sbjct: 490 PRVVAFNYSPE---------VKGRLVLKGLSVVGNARLQFDAGWTDMAAAFMAIKKTVTA 540
Query: 449 NTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + E+ R + D + +++ + P
Sbjct: 541 SGRHVTYEAGRSEETGHADLAWAVLHAISNEP 572
>gi|238027334|ref|YP_002911565.1| phage terminase ATPase subunit [Burkholderia glumae BGR1]
gi|237876528|gb|ACR28861.1| Phage terminase ATPase subunit [Burkholderia glumae BGR1]
Length = 605
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 56/458 (12%), Positives = 117/458 (25%), Gaps = 43/458 (9%)
Query: 55 QLEFMEV-VDAHC--LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
Q + ++ + + N + + I R IG T A L G + I
Sbjct: 153 QEQRLKEAIREQLIGHQNTWFENRHLRRRNILKSRQIGATFYFAHEALVRAL-ETGTNQI 211
Query: 112 CLANSETQLKT-TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK--- 167
L+ S Q + + W + M+ + + + +
Sbjct: 212 FLSASRAQAYVFRSYIQKFAWSAAQVELTGDPMRLSNGAELIFLGTSSRTAQSYNGDLYF 271
Query: 168 -HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
Y + + + + H+ M + ++ T + A+ +
Sbjct: 272 DEYFWVSNFATLNKVAMGMATHSHLRMTHFSTPSTTTHEAYPFWTGAHFNRDRADDERVE 331
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
+ W++ + G E + +
Sbjct: 332 IDISHTSLAPGRQC---GDGQWRQIVTAEDAVASGFTKLDLEDLRSTNS--PADFENLYM 386
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYAP----------LIMGCDIAEEGGDNTVVV 335
QF F + ++ P + +G D A G VV
Sbjct: 387 CQFVDDTSSVFAFRLVQACMVDSWDVWTDVKPLLDRPFGWKQVWIGYDPALTGDSAGCVV 446
Query: 336 L------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + W D T KI L ++Y I ID G +
Sbjct: 447 IAPPEQPNGKFRVLERHRWKGIDFETQAEKIRELTQRYHVTYIAIDTTGIGHGVHQLVRQ 506
Query: 390 LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFI 446
V + + L +K + L + L Q+ S++ +
Sbjct: 507 FFPRVVPINYSPE---------VKNRLVLKGMSVIGKKRLEFDAGMTDLAQSFLSIRRAM 557
Query: 447 VPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
P+ ++ + R + D + ++ P
Sbjct: 558 TPSGTKMTYTAARNEEIGHADLAWACLHALDNEPLEGA 595
>gi|260599032|ref|YP_003211603.1| Terminase, ATPase subunit [Cronobacter turicensis z3032]
gi|260218209|emb|CBA33092.1| Terminase, ATPase subunit [Cronobacter turicensis z3032]
Length = 590
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 55/472 (11%), Positives = 113/472 (23%), Gaps = 49/472 (10%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
F +QL + H + I R IG T + L
Sbjct: 142 FEESFDYQLRWHRAGLEHRIRD------------ILKSRQIGATFYFSREALLRALETGH 189
Query: 108 ISVICLANSETQL-----KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
+ A S+TQ +A + + + +
Sbjct: 190 NQIFLSA-SKTQAYVFREYIIQFARRVDVELSGDPIVIGNNGAKLIFLGTNSNTAQSHNG 248
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ + + + + + ++ G L +
Sbjct: 249 DLYVDEIFWIPNFQRLRKVASGMASQKHLRSTYFSTPSTLGHGAFPFW-SGELFNKGRTS 307
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
+ + + I+ G D + + + R
Sbjct: 308 AAERVDIDISHAALAGGMLCGDGQWRQIVTIEDALAGGCDLFDLDALKRENSAED--FRN 365
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDP----------YAPLIMGCDIAEEGGDNT 332
+F F + ++ + P+ +G D + G
Sbjct: 366 LFMCEFVDDKASVFPFEELQRCMVDSLEEWEDFSPFAARPFGSRPVWIGYDPSHTGDSAG 425
Query: 333 VVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
VVL I W D T I L EKY+ + I IDA G
Sbjct: 426 CVVLAPPVVSGGKFRILERHQWKGMDFATQAQAIRELTEKYQVEYIGIDATGIGQGVFQL 485
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
+ + +T + +K D + L + + Q+ +++
Sbjct: 486 VRAFWPAAREIRYSPE---------VKTAMVLKAKDTISRGCLEYDAGATDITQSFMAIR 536
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + E+ R + A D + M+ P + ++
Sbjct: 537 KTMTSSGRSATYEASRSEEASHADVAWATMHALLNEPLTAGSGQASSSILEF 588
>gi|167619947|ref|ZP_02388578.1| phage terminase, ATPase subunit [Burkholderia thailandensis Bt4]
Length = 589
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 46/464 (9%), Positives = 109/464 (23%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 143 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 197
Query: 116 S-ETQLKTTL---WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + +A + + L + + Y
Sbjct: 198 KAQAHVFKQYITQFARGAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 257
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + G R + +
Sbjct: 258 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFW-SGAHANRGRAAGERIQIDTS 316
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + G D + + Y + + QF
Sbjct: 317 HEALVRGMLCEDAQWRQIV-TVLDAMAGGCDLFDIDELRREYSAEE--FANLLMCQFIDD 373
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 374 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 433
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 434 VDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 493
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ + +T L +K + L + L ++K + +
Sbjct: 494 VALNYSP---------DVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 544
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 545 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 588
>gi|53722089|ref|YP_111074.1| bacteriophage terminase, ATPase subunit [Burkholderia pseudomallei
K96243]
gi|52212503|emb|CAH38529.1| putative bacteriophage terminase, ATPase subunit [Burkholderia
pseudomallei K96243]
Length = 601
Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/464 (9%), Positives = 107/464 (23%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 155 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 209
Query: 116 S-ETQLKTTL---WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + +A + + L + + Y
Sbjct: 210 KAQAHVFKQYITQFARGAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 269
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + A I
Sbjct: 270 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFWSGAHANRGRAAADRIQI--DT 327
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + + G D + + Y + + QF
Sbjct: 328 SHEALVRGMLCEDAQWRQIVTVLDAMAGGCDLFDIDELRREYSAEE--FANLLMCQFIDD 385
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 386 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 445
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 446 VDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 505
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 506 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 556
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 557 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 600
>gi|167916806|ref|ZP_02503897.1| bacteriophage terminase, ATPase subunit [Burkholderia pseudomallei
112]
Length = 589
Score = 107 bits (266), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/464 (9%), Positives = 107/464 (23%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 143 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 197
Query: 116 S-ETQLKTTL---WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + +A + + L + + Y
Sbjct: 198 KAQAHVFKQYITQFARGAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 257
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + A I
Sbjct: 258 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFWSGAHANRGRAAADRIQI--DT 315
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + + G D + + Y + + QF
Sbjct: 316 SHEALVRGMLCEDAQWRQIVTVLDAMAGGCDLFDIDELRREYSAEE--FANLLMCQFIDD 373
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 374 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 433
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 434 VDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 493
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 494 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 544
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 545 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 588
>gi|238025823|ref|YP_002910054.1| phage terminase, ATPase subunit [Burkholderia glumae BGR1]
gi|237875017|gb|ACR27350.1| Phage terminase, ATPase subunit [Burkholderia glumae BGR1]
Length = 589
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 48/464 (10%), Positives = 105/464 (22%), Gaps = 43/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E + + + + K R IG T A + A+
Sbjct: 143 RESLFDYQKVWYRNGDQQTRNILK-----SRQIGATWYFAREAFVDALDTGRNQIFLSAS 197
Query: 116 SET----QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ +A + L + + + Y
Sbjct: 198 KAQAHVFKQYIVQFARDVADVELTGDPIILPNGATLYFLGTNSRTAQSYHGNLYFDEYFW 257
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + H + + + +S T + A I
Sbjct: 258 VPKFRELNTVASGMAMHKRWRLTYFSTPSSTTHEAYAFWSGADANRGRAPGDRIQI--DT 315
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + + G D E + RY D + QF
Sbjct: 316 SHEALVRGMLGEDEQWRQVVTVLDAIEGGCDLFDLERLRRRYSAD--AFANLLMCQFIDD 373
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F + ++ + +G D A G +VV+
Sbjct: 374 SVSVFKLAELQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 433
Query: 337 --RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
+ + D I + +Y I ID G +
Sbjct: 434 VEGGTFRVLERHQFRGNDFEEQAAAIEQITRRYNVGYIAIDTTGMGQGVYQLVRKFYPAA 493
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L +K + +
Sbjct: 494 VALNYSPE---------VKTRLVLKGQSVIRNGRLQFDAGWTDLAAAFMGIKQTMTASGR 544
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ R + D + ++ + P + D ++
Sbjct: 545 HATYTADRNEETGHADLAWACLHA-IDREPLAGGDINSSSFTEF 587
>gi|17981830|ref|NP_536821.1| terminase [Haemophilus phage HP2]
gi|13752203|gb|AAK37798.1| orf16 [Haemophilus phage HP2]
gi|309750513|gb|ADO80497.1| probable terminase, ATPase subunit [Haemophilus influenzae R2866]
Length = 607
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 50/442 (11%), Positives = 114/442 (25%), Gaps = 44/442 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ H + ++ + K R IG T ++ L + A S+
Sbjct: 163 LFDYQKHIRANKHHDVRNILK-----SRQIGATYYFSFEALEDAIFSGDNQIFLSA-SKR 216
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQ------SLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
Q + K + + + S + Y+ +
Sbjct: 217 QA-EIFKNYIVKMAREYFGVELTGNPIILSNGAELHFLSTNKNTSQGNSGHVYGDEYAWI 275
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ + H + + +S + + + + R +
Sbjct: 276 RDFQRFNDVASAMATHAKWRETYFSTPSSKFHESYSFWSGDNWRDGDPKRKNVPFPTFAE 335
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
L + + D E + RY +
Sbjct: 336 LRDG-GRLCPDGQWRYVVTIEDALKGGAGTLFNIEKLKQRYSKY--AFNQLYMCVWIDDA 392
Query: 293 IDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVLR------ 337
F + ++ + ++ P P + G D A G + V++
Sbjct: 393 DSIFTVHQLLKCGVDISKWKDFNPKADRPFGDREVWGGFDPAHSGDGASFVIIAPPALPS 452
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
+ + W+ N+I L EKY I IDA G + ++
Sbjct: 453 EKYRVLARYQWNGLSYVYQANQIRALYEKYNMTYIGIDATGVGYGVYELVKE-------- 504
Query: 398 LGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
+RA +T + +K+ D +E + ++ + +K + +
Sbjct: 505 -FARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSESELDIVPSFLMIKHQSTKSGNTM 563
Query: 454 AIESKRVKGAKSTDYSDGLMYT 475
++R + D +
Sbjct: 564 TFTAERTVKTQHADVFFAICNA 585
>gi|72537721|ref|YP_293751.1| phage terminase ATPase subunit [Burkholderia phage phi52237]
gi|72398411|gb|AAZ72646.1| phage terminase ATPase subunit [Burkholderia phage phi52237]
Length = 601
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 46/464 (9%), Positives = 108/464 (23%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 155 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 209
Query: 116 S-ETQLKTTL---WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + +A + + L + + Y
Sbjct: 210 KAQAHVFKQYITQFARGAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 269
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + G R + +
Sbjct: 270 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFW-SGAHANRGRAAGERIQIDTS 328
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + G D + + Y + + QF
Sbjct: 329 HEALVRGMLCEDAQWRQIV-TVLDAMAGGCDLFDIDELRREYSAEE--FANLLMCQFIDD 385
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 386 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 445
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 446 VDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 505
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 506 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 556
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 557 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 600
>gi|167821684|ref|ZP_02453364.1| phage terminase, ATPase subunit [Burkholderia pseudomallei 91]
gi|254188172|ref|ZP_04894684.1| Putative ATPase subunit of terminase (gpP-like) [Burkholderia
pseudomallei Pasteur 52237]
gi|157935852|gb|EDO91522.1| Putative ATPase subunit of terminase (gpP-like) [Burkholderia
pseudomallei Pasteur 52237]
Length = 589
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 46/464 (9%), Positives = 108/464 (23%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 143 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 197
Query: 116 S-ETQLKTTL---WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + +A + + L + + Y
Sbjct: 198 KAQAHVFKQYITQFARGAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 257
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + G R + +
Sbjct: 258 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFW-SGAHANRGRAAGERIQIDTS 316
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + G D + + Y + + QF
Sbjct: 317 HEALVRGMLCEDAQWRQIV-TVLDAMAGGCDLFDIDELRREYSAEE--FANLLMCQFIDD 373
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 374 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 433
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 434 VDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 493
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 494 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 544
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 545 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 588
>gi|152994622|ref|YP_001339457.1| hypothetical protein Mmwyl1_0587 [Marinomonas sp. MWYL1]
gi|150835546|gb|ABR69522.1| protein of unknown function DUF264 [Marinomonas sp. MWYL1]
Length = 601
Score = 106 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 50/456 (10%), Positives = 122/456 (26%), Gaps = 41/456 (8%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLAN 115
+ + +P + + + R IG T A+ L T + +
Sbjct: 157 KLFFPYQEYWYQRKLDPLTRRTRMILKS-RQIGATWYFAFEALDDAIRTGDNQLFLSSSR 215
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS----KHYST 171
+ ++ + + K + + + S +
Sbjct: 216 DQAEVFKAYIIAFAMQHFDVELKGQGVITLSNGAELRFLSTNSRTANSYHGHLYCDEVFW 275
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
M + + H + + + ++ + + ++ A +
Sbjct: 276 MPDFVKLWDMASGMSSHKKWRRTLFSVPSATSHPAYEMWNGNNYNKKLAESKRVTFDISH 335
Query: 232 RLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ + P W++ I+ G D E + D + ++
Sbjct: 336 KN---LKGGWIGPDKMWRQIVTIEDAEEGGCDLFDIEQLRDENSTD--AFNNKYLCKWID 390
Query: 291 QDIDSFIPLNIIEEALNREP---------CPDPYAPLIMGCDIAEEGGDNT------VVV 335
F ++ ++ E P P+ +G D + + + +
Sbjct: 391 DANSVFTLAKLLSCMVDTETWTDYHKDAGQPFGNRPVAIGYDPSRTTDNASLALLSIPLG 450
Query: 336 LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+ W + + +I EK+ I ID + G + +E V
Sbjct: 451 ASDPWRLLKKDSWRGVNFQWQAARIKEEKEKHNVKHIGIDVSGIGRGVFELVEQFYRRVT 510
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN---HSGLIQNLKSLKSFIVPNTGE 452
+ + +TEL +K D +E + Q + + V + G+
Sbjct: 511 PITYSVQT---------KTELVLKALDLIENGLFKFSAGDKEVAQAFMMI-TKKVTDNGQ 560
Query: 453 LAIESKRVKGAKSTDYSDGLMYTF-AENPPRSDMDF 487
+ + R D + +M+ F E
Sbjct: 561 ITYVANRSNATGHADVAWAIMHAFNYEPIAPKRKTT 596
>gi|257142677|ref|ZP_05590939.1| putative ATPase subunit of terminase (gpP-like) protein
[Burkholderia thailandensis E264]
Length = 589
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 43/464 (9%), Positives = 106/464 (22%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 143 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 197
Query: 116 S-ETQLKTTLWAEVSKW---LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + + ++ + L + + Y
Sbjct: 198 KAQAHVFKQYITQFARAAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 257
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + A I
Sbjct: 258 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFWSGAHANRGRAAADRIQI--DT 315
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + + G + + + Y + + F
Sbjct: 316 SHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAEE--FANLLMCHFIDD 373
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 374 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 433
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 434 VDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 493
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 494 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 544
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 545 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 588
>gi|83717940|ref|YP_439548.1| putative ATPase subunit of terminase (gpP-like) [Burkholderia
thailandensis E264]
gi|83651765|gb|ABC35829.1| Putative ATPase subunit of terminase (gpP-like) [Burkholderia
thailandensis E264]
Length = 601
Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/464 (9%), Positives = 106/464 (22%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 155 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 209
Query: 116 S-ETQLKTTLWAEVSKW---LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + + ++ + L + + Y
Sbjct: 210 KAQAHVFKQYITQFARAAADIELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 269
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + A I
Sbjct: 270 VPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFWSGAHANRGRAAADRIQI--DT 327
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + + G + + + Y + + F
Sbjct: 328 SHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAEE--FANLLMCHFIDD 385
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + +G D A G +VV+
Sbjct: 386 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 445
Query: 337 -RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + ++Y I ID G +
Sbjct: 446 VDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAA 505
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 506 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 556
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 557 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 600
>gi|9628620|ref|NP_043485.1| hypothetical protein HP1p21 [Haemophilus phage HP1]
gi|1722793|sp|P51718|VPP_BPHP1 RecName: Full=Probable terminase, ATPase subunit; AltName:
Full=ORF16
gi|1046243|gb|AAB09201.1| orf16 [Haemophilus phage HP1]
Length = 607
Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/442 (11%), Positives = 115/442 (26%), Gaps = 44/442 (9%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ H ++ ++ + K R IG T ++ L + A S+
Sbjct: 163 LFDYQKHIRSNKHHDVRNILK-----SRQIGATYYFSFEALEDAIFSGDNQIFLSA-SKR 216
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQ------SLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
Q + K + + + S + Y+ +
Sbjct: 217 QA-EIFKNYIVKMAREYFGVELTGNPIILSNGAELHFLSTNKNTSQGNSGHVYGDEYAWI 275
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ + + H + + +S + + + + R +
Sbjct: 276 RDFQRFDDVASAMATHEKWRETYFSTPSSKFHESYSFWSGDNWRDGDPKRKNVPFPTFAE 335
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
L + + D E + RY +
Sbjct: 336 LRDG-GRLCPDGQWRYVVTIEDALKGGADKLFNIEKLKQRYSKY--AFNQLYMCIWIDDA 392
Query: 293 IDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVL------R 337
F + ++ A ++ P P + G D A G + V++
Sbjct: 393 DSIFNVKQLLKCGVDIAKWKDFNPKADRPFGDREVWGGFDPAHSGDGASFVIIAPPALPG 452
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
+ + W N+I L EKY I IDA G + ++
Sbjct: 453 EKYRMLARYQWHGLSYVYQANQIRALYEKYNMTYIGIDATGVGYGVYELVKE-------- 504
Query: 398 LGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
+RA +T + +K+ D +E + ++ + +K + +
Sbjct: 505 -FARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSESELDIVPSFLMIKHQSTKSGNTM 563
Query: 454 AIESKRVKGAKSTDYSDGLMYT 475
++R + D +
Sbjct: 564 TFTAERTVKTQHADVFFAICNA 585
>gi|326782381|ref|YP_004322781.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-ShM2]
gi|310003329|gb|ADO97726.1| terminase DNA packaging enzyme large subunit [Synechococcus phage
S-ShM2]
Length = 362
Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/371 (14%), Positives = 102/371 (27%), Gaps = 53/371 (14%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
N E + + F+ ++ L F +Q E ++
Sbjct: 11 PNLKKANTSIEFTNDQISEFAKCYNDPVYFIKNYVKIVSLDAGLIPFDM-YHFQEEMVQK 69
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+ N P R GK+T+ +LW + ++V LAN +
Sbjct: 70 FHDNRFNIAKLP------------RQSGKSTIVTSYLLWYVIFNDNVNVAILANKAATSR 117
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
L + + LP SL +++ T S
Sbjct: 118 EML-QRLQRSYENLP-----------KWLQQGIVQWNRGSLELENGSKIMAASTSS---- 161
Query: 182 DTFVGHHNTYGMAIINDEASGTP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGK 236
I DE + P D + ++ + I T + + K
Sbjct: 162 ---SAVRGMSFNVIFLDEFAFVPNHIADEFFSSVYPTISSGKSTKVIIISTPHGMNMFYK 218
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + +++ ++ V G D + IA +VE +F D+
Sbjct: 219 LWHDSERKKNEYISTEVHWSEVPGRDAKWKAQTIANTSE--QQFKVEFECEFLGSV-DTL 275
Query: 297 IPLNIIEEALNREP-----------CPDPYAPLIMGCDIAE--EGGDNTVVVLRRGPVIE 343
I + + + +P ++ D+A G + VV+ +
Sbjct: 276 ISPSKLRTMVYNDPLVQNKGLSIYEHVQKDHNYVITVDVARGVSGDFSAFVVIDTTTIPY 335
Query: 344 HLFDWSKTDLR 354
L K +
Sbjct: 336 KLVAKYKNNTI 346
>gi|167567112|ref|ZP_02360028.1| phage terminase, ATPase subunit [Burkholderia oklahomensis EO147]
Length = 589
Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/467 (10%), Positives = 114/467 (24%), Gaps = 52/467 (11%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 143 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 197
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHW------FEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
++++ + + Y
Sbjct: 198 KAQA--HVFKQYITQFARDAADVELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEY 255
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ + + + + H + + +S T + F + +ANR
Sbjct: 256 FWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHE-----AYAFWSGAHANRGRAAGDR 310
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQF 288
+ + + +D + QI T I S + QF
Sbjct: 311 IQIDTSHEALVRGMLGEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAEEFANLLMCQF 370
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDIAEEGGDNTVVVL- 336
+ F ++ ++ + + +G D A G +VV+
Sbjct: 371 IDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAGLVVVA 430
Query: 337 ---RRG--PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
G + + D I + ++Y I ID G +
Sbjct: 431 PPRVDGGAFRVLERHQFRGNDFEEQAAAIEAITQRYHVGYIAIDTTGMGQGVYQLVRKFF 490
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVP 448
+ +T L +K + L + L + ++K +
Sbjct: 491 PAAVALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAASFMAIKQTMTA 541
Query: 449 NTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + + R + D + ++ R + G S +
Sbjct: 542 SGRQATYTAGRSEETGHADLAWACLHA----IDREPLAGGGVNSSSF 584
>gi|68250195|ref|YP_249307.1| terminase, ATPase subunit [Haemophilus influenzae 86-028NP]
gi|68058394|gb|AAX88647.1| terminase, ATPase subunit [Haemophilus influenzae 86-028NP]
Length = 593
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/434 (12%), Positives = 119/434 (27%), Gaps = 37/434 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET--QLKTTLWAEVSKW--LSLLPN 137
I R IG T A T + A+ + Q ++ + + + L
Sbjct: 168 ILKSRQIGATYYFAHEAFIDALTTGHNQIFLSASKKQALQFRSYIVNYAKQTADVDLKGE 227
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + + + + + + Y +
Sbjct: 228 TIKLPNGAELIFLGTNSATAQSYHGNLYFDEVFWVPKFDVMRKVASGMAAQKMYRQTYFS 287
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
+ A I + K ++ D
Sbjct: 288 TPTTIAHPAYAFFSGKAFNRNRAKSEKIEIDISH-ENLKSGKLCADRQWKQIVSIYDAME 346
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
G + + +IA + QF + +F ++ ++ Y P
Sbjct: 347 S-GCNLFNIDDLIAENSKEE--FEQLFLCQFADDNSSAFKFSDLQLCQVDSLEEWHDYKP 403
Query: 318 ----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKIS 361
+ +G D A G +V++ + H + D T ++I
Sbjct: 404 FYQRPFGNREVWLGYDPAFTGDRAALVIVAPPKVEGGDYRVLHKQTFHGMDYETQASRIK 463
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ Y I+ID G+ + A LE+ + + E+ +K
Sbjct: 464 QFCDDYNVTRIVIDKTGMGSGVYQEVR---------KFYPMAQGLEYNADLKNEMVLKTQ 514
Query: 422 DWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ ++ L S ++ + ++K + TG++ S R + A D S +M
Sbjct: 515 NLIQKRRLKFDSGDNDIVSSFMTVKK-RITGTGKITYVSDRSEDASHGDLSWAIMNCILN 573
Query: 479 NPPRSDMDFGRCPS 492
P D S
Sbjct: 574 VPYGLGGDVSSNKS 587
>gi|254449246|ref|ZP_05062694.1| fels-2 prophage protein [gamma proteobacterium HTCC5015]
gi|198261159|gb|EDY85456.1| fels-2 prophage protein [gamma proteobacterium HTCC5015]
Length = 593
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/469 (11%), Positives = 119/469 (25%), Gaps = 49/469 (10%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E + + N I R IG T A + + A+
Sbjct: 143 EEELFDYQRVWYQAGKNHRNRN----ILKSRQIGATWFFAREAICDALETGKNKIFLSAS 198
Query: 116 SETQ------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + AE L P + + + Y
Sbjct: 199 KAQAHIFRSYIVKFVLAETGIELKGDPIR--LPNGAELYFLGTNAQTAQGYHGDVYMDEY 256
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ R ++ + + H + + ++ T + +R +
Sbjct: 257 FWIGRFKEFKKVTSGMAMHKQWKRTYFSTPSALTHEAYPFWSGEDWKKRRPKDQRVDF-- 314
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQF 288
D + QI T + S + + +F
Sbjct: 315 ---DVSHEALAKGALCPDKQWRQIVTVEDAIRGGCDLFDLDDLRQEYSHEEWQNLLMCEF 371
Query: 289 PQQDIDSFIPLNIIEEALNREP----------CPDPYAPLIMGCDIA---EEGGDNTVVV 335
+ F + ++ P +P+ +G D + E+G ++V
Sbjct: 372 MDDTLSVFPLPKLQACMIDSWIQWRDLKPFAAKPLGDSPVWVGYDPSSDSEQGDGAGLIV 431
Query: 336 LR------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
L + I D N I L +Y+ + ID GA + +E
Sbjct: 432 LSPSKSKSQKHRIIEKHRLRGMDYEAQANFILALRSRYQIEYCGIDTTGAGAAVAELVEK 491
Query: 390 LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFI 446
V R+ + ++ +K + ++ L + L Q+ +++ +
Sbjct: 492 KLPCVRRLNYSPE---------LKAQMVMKTLNVIDHQRLEFDAGWSDLAQSFMAIRRAM 542
Query: 447 VPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R K + + M+ P + +
Sbjct: 543 TDTGRRVTYIAGRRKDTGHAELAWATMHAIFNEPLEGPSEGASGSIIEI 591
>gi|300714692|ref|YP_003739495.1| terminase, ATPase [Erwinia billingiae Eb661]
gi|299060528|emb|CAX57635.1| Probable terminase, ATPase subunit [Erwinia billingiae Eb661]
Length = 512
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/467 (11%), Positives = 123/467 (26%), Gaps = 55/467 (11%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+E + H + + + R IG + A L G + I L+ S
Sbjct: 63 VLESLFEH-QKRWYKQRERRNRFILKS-RQIGASWYFAREALLRAL-ETGTNQIFLSASR 119
Query: 118 TQLKTTLWAEVSKWLSLLP-------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
Q + + +L+ ++ + + + +
Sbjct: 120 AQAFQ--FKKFIIFLARSIGVELKGGDEIILSNGATLYFLGTSAATAQSYTGDLYFDEAF 177
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ + + + H + +S +
Sbjct: 178 WVANFLNLRKVAAGMATHVGLRRTYFSTPSSEEHEAFEFWSGKLFNNGRDK-------KE 230
Query: 231 RRLSGKFYEIFNKPL---DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
R ++ D+ R + + V F + + D
Sbjct: 231 RADLDLSHKALKDGQLCADNIWRQIVTVQDVIDQGFPFIDLEEIQSENSPDEFDNLYRCI 290
Query: 288 FPQQDIDSFIPLNIIEEALNR----EPCPDPYAPL-------IMGCDIAEEGG--DNTVV 334
F +Q +F +I ++ P +PYAP +G D D+ +
Sbjct: 291 FVKQGERAFNYNALINCGVDGYSGIWPDWNPYAPRPLGNRKVWIGYDPNGNSDKGDSAGL 350
Query: 335 VL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
V+ + + I L++ Y I ID GA +
Sbjct: 351 VVLAPPLVPGGKFRVVERHQLRGMEFEEQAEFIKRLIKIYDVQHIDIDGTGIGAAVHQLV 410
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
V A + + + +L +K + + ++ + +++
Sbjct: 411 ---------VKFFPAAQMHVYTPSVKRQLVLKAQMVIRAGRFEYDAGMMDIVSSFMTVRK 461
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCP 491
F + G + S R +G+ D + M+ P +D G
Sbjct: 462 F-ITQGGHTSYASDRKRGSSHGDLAWATMHALQNEPLGNDAGSGSDS 507
>gi|145636853|ref|ZP_01792518.1| terminase, ATPase subunit [Haemophilus influenzae PittHH]
gi|145269934|gb|EDK09872.1| terminase, ATPase subunit [Haemophilus influenzae PittHH]
Length = 593
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 64/438 (14%), Positives = 128/438 (29%), Gaps = 45/438 (10%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET--QLKTTLWAEVSKW--LSLLPN 137
I R IG T A T + A+ + Q ++ + + + L
Sbjct: 168 ILKSRQIGATYYFAHEAFIDALTTGHNQIFLSASKKQALQFRSYIVNYAKQTADVDLKGE 227
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + + + + + + Y +
Sbjct: 228 TIKLPNGAELIFLGTNSATAQSYHGNLYFDEVFWVPKFDVMRKVASGMAAQKMYRQTYFS 287
Query: 198 DEASGTPDVINLGILGFLTERN---ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
+ G RN + + I S+ SGK WK+
Sbjct: 288 TP-TTIAHPAYAFFSGKAFNRNRTKSEKIEIDISHENLKSGKLCADR-----QWKQIVSI 341
Query: 255 TRTVEGIDPSF-HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+EG F + +IA + QF + +F ++ ++
Sbjct: 342 YDAMEGGCNLFNIDDLIAENSKEE--FEQLFLCQFADDNSSAFKFSDLQLCQVDSLEEWH 399
Query: 314 PYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTN 357
Y P + +G D A G +V++ + H + D T
Sbjct: 400 DYKPFYQRPFGNREVWLGYDPAFTGDRAALVIVAPPKVEGGDYRVLHKQTFHGMDYETQA 459
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
++I + Y I+ID G+ + A LE+ + + E+
Sbjct: 460 SRIKQFCDDYNVTRIVIDKTGMGSGVYQEVR---------KFYPMAQGLEYNADLKNEMV 510
Query: 418 VKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
+K + ++ L S ++ + ++K + TG++ S R + A D S +M
Sbjct: 511 LKTQNLIQKRRLKFDSGDNDIVSSFMTVKK-RITGTGKITYVSDRSEDASHGDLSWAIMN 569
Query: 475 TFAENPPRSDMDFGRCPS 492
P D S
Sbjct: 570 CILNVPYGLGGDVSSNKS 587
>gi|319775358|ref|YP_004137846.1| Terminase, ATPase subunit [Haemophilus influenzae F3047]
gi|317449949|emb|CBY86161.1| Terminase, ATPase subunit [Haemophilus influenzae F3047]
Length = 603
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 59/439 (13%), Positives = 122/439 (27%), Gaps = 47/439 (10%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I R IG T A T + A+ + L+ + + + +
Sbjct: 178 ILKSRQIGATYYFAHEAFIDALTTGHNQIFLSASKKQALQFRSY--IVNYAKQTADVDLK 235
Query: 142 EMQSLSL------HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+ + + + + + + Y
Sbjct: 236 GETIKLPNGAELTFLGTNSATAQSYHGNLYFDEVFWVPKFDVMRKVASGMAAQKMYRQTY 295
Query: 196 INDEASGTPDVINLGILGFLTE--RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ + + + I S+ SGK WK+
Sbjct: 296 FSTPTTIAHPAYAFFSGKAFNRNRAKSEKIEIDISHENLKSGKLCADR-----QWKQIVS 350
Query: 254 DTRTVEGIDPSF-HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+EG F + +IA + QF + +F ++ ++
Sbjct: 351 IYDAMEGGCNLFNIDDLIAENSKEE--FEQLFLCQFADDNSSAFKFSDLQLCQVDSLEEW 408
Query: 313 DPYAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTT 356
Y P + +G D A G +V++ R + H + D T
Sbjct: 409 HDYKPFYQRPFGNREVWLGYDPAFTGDRAALVIVAPPKVERGDYRVLHKQTFHGMDYETQ 468
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
++I + Y I+ID G+ + LE+ + + E+
Sbjct: 469 ASRIKQFCDDYNVTRIVIDKTGMGSGVYQEVR---------KFYPMVQGLEYNADLKNEM 519
Query: 417 HVKMADWLEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
+K + ++ L + ++ + ++K + TG++ S R + A D S +M
Sbjct: 520 VLKTQNLIQKRRLKFDSGDNDIVSSFMTVKK-RITGTGKITYVSDRSEDASHGDLSWAIM 578
Query: 474 YTFAENPPRSDMDFGRCPS 492
P D S
Sbjct: 579 NCILNVPYGLGGDVSSNKS 597
>gi|238920988|ref|YP_002934503.1| hypothetical protein NT01EI_3118 [Edwardsiella ictaluri 93-146]
gi|238870557|gb|ACR70268.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 595
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 60/475 (12%), Positives = 115/475 (24%), Gaps = 61/475 (12%)
Query: 55 QLEFMEVV--------DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
Q E ++ V H + I+ R IG T A
Sbjct: 137 QAEKLKQVFLEGLYPHQKHWYRAGLEHRIRD----INKSRQIGATMFFAQEGFVDAVETG 192
Query: 107 GISVICLANSETQ----------LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD 156
+ A+ + E+ + LP+
Sbjct: 193 RNQIFLSASKAQAHQFRQYIIDFARDAADVELKGEVIHLPHNDG-----RMYFLGTNART 247
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
+ Y + R R + + + +S +
Sbjct: 248 AQTYHGNLYLDEYFWIYRFLELRRNAAGMASQKRWRQTYFSTPSSINHEAYKFWAGLLFN 307
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
A I R + + I+ +G D + + Y +
Sbjct: 308 RGRAKSEHIRLDLSHR-ALAAGRLCEDGQWRQIV-TIEDAIRQGYDLFDIDQLRLEYSPE 365
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAP----------LIMGCDIA 325
QF F PL++++ + + D Y P + +G D A
Sbjct: 366 E--FANLFMCQFIDDTESVF-PLSLLQGCMVDSWAVWDDYKPFALRPLGERSVWVGYDPA 422
Query: 326 EEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
G VV+ + W D I + +Y I ID
Sbjct: 423 LTGDSAGCVVVAPPVVEGGKFRVIEKHQWHGMDFAAQAENIRKITGRYNVTYIGIDVTGI 482
Query: 380 GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLI 436
G ++ V + L +K D + L + L
Sbjct: 483 GHGVHQLVKQFFPAVQAFSYSPE---------VKQRLVLKTLDVVRKHRLEFDAGWTDLA 533
Query: 437 QNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCP 491
Q+ +++ + P+ ++ ++ R + D + M+ P S
Sbjct: 534 QSFMAIRKTLTPSGRQVTFQASRSEEVSHADLAWACMHAIINEPLESSGGANSWR 588
>gi|55163155|emb|CAH61098.1| large terminase subunit [Yersinia enterocolitica subsp. palearctica
Y11]
Length = 202
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/202 (17%), Positives = 63/202 (31%), Gaps = 20/202 (9%)
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDL 353
+ A E P Y P+ MG D + G VV+ I W D
Sbjct: 7 EWEDFAPFAE-QPFNYHPVWMGYDPSHTGDSAGCVVMAPPWVPGGKFRILERHQWKGMDF 65
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
I L EKY + I IDA G + A ++ + +
Sbjct: 66 ADQAESIKKLTEKYNVEYIGIDATGIGQGVYQLVR---------NFFPAAREIRYSAEVK 116
Query: 414 TELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD 470
T + +K D + L + + + +++ + + E+ R + D +
Sbjct: 117 TNMVLKAKDLITTGRLEYDISYTDITLSFMAIRKTMTASGRSATYEASRSEEVSHADLAW 176
Query: 471 GLMYTFAENPPRSDMDFGRCPS 492
M+ P + + PS
Sbjct: 177 AAMHAMINEP-LTAGNGNVTPS 197
>gi|145630909|ref|ZP_01786686.1| terminase, ATPase subunit [Haemophilus influenzae R3021]
gi|144983569|gb|EDJ91037.1| terminase, ATPase subunit [Haemophilus influenzae R3021]
Length = 593
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 61/437 (13%), Positives = 125/437 (28%), Gaps = 43/437 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET--QLKTTLWAEVSKW--LSLLPN 137
I R IG T A T + A+ + Q ++ + + + L
Sbjct: 168 ILKSRQIGATYYFAHEAFIDALTTGHNQIFLSASKKQALQFRSYIVNYAKQTADVDLKGE 227
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + + + + + + Y +
Sbjct: 228 TIKLPNGAELIFLGTNSATAQSYHGNLYFDEVFWVPKFDVMRKVASGMAAQKMYRQTYFS 287
Query: 198 DEASGTPDVINLGILGFLTE--RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
+ + + I S+ SGK WK+
Sbjct: 288 TPTTIAHPAYAFFSGKAFNRNRAKSEKIEIDISHENLKSGKLCADR-----QWKQIVSIY 342
Query: 256 RTVEGIDPSF-HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+EG F + +IA + QF + +F ++ ++
Sbjct: 343 DAMEGGCNLFNIDDLIAENSKEE--FEQLFLCQFADDNSSAFKFSDLQLCQVDSLEEWHD 400
Query: 315 YAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNN 358
Y P + +G D A G +V++ + H + D T +
Sbjct: 401 YKPFYQRPFGNREVWLGYDPAFTGDRAALVIVAPPKVEGGDYRVLHKQTFHGMDYETQAS 460
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+I + Y I+ID G+ + A LE+ + + E+ +
Sbjct: 461 RIKQFCDDYNVTRIVIDKTGMGSGVYQEVR---------KFYPMAQGLEYNADLKNEMVL 511
Query: 419 KMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K + ++ L S ++ + ++K + TG++ S R + A D S +M
Sbjct: 512 KTQNLIQKRRLKFDSGDNDIVSSFMTVKK-RITGTGKITYVSDRSEDASHGDLSWAIMNC 570
Query: 476 FAENPPRSDMDFGRCPS 492
P D S
Sbjct: 571 ILNVPYGFGGDVSSNKS 587
>gi|134288784|ref|YP_001111035.1| gp4, phage terminase, ATPase subunit [Burkholderia phage phiE202]
gi|134131997|gb|ABO60745.1| gp4, phage terminase, ATPase subunit [Burkholderia phage phiE202]
Length = 589
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/466 (9%), Positives = 106/466 (22%), Gaps = 46/466 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 143 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALDTDRNQIFLSAS 197
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHW------FEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
++++ + + Y
Sbjct: 198 KAQA--HVFKQYITQFARDAADVELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEY 255
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ + + + + H + + +S T + G R + +
Sbjct: 256 FWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFW-SGAHANRGRAAGERIQID 314
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ + + G + + + Y + + F
Sbjct: 315 TSHEALVRGMLCEDAQWRQIV-TVLDAMAGGCNLFDIDELRREYSAEE--FANLLMCHFI 371
Query: 290 QQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDIAEEGGDNTVVVL-- 336
+ F ++ ++ + + +G D A G +VV+
Sbjct: 372 DDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAGLVVVAP 431
Query: 337 ---RRG-PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
G + + D I + ++Y I ID G +
Sbjct: 432 PRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFP 491
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPN 449
+ +T L +K + L + L ++K + +
Sbjct: 492 AAVALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTAS 542
Query: 450 TGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R + D + ++ P + Y
Sbjct: 543 GRQATYTAGRTEETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 588
>gi|209694587|ref|YP_002262515.1| terminase, ATPase subunit [Aliivibrio salmonicida LFI1238]
gi|208008538|emb|CAQ78711.1| terminase, ATPase subunit [Aliivibrio salmonicida LFI1238]
Length = 590
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 53/454 (11%), Positives = 120/454 (26%), Gaps = 55/454 (12%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + N++ + K R IG T + L + A S
Sbjct: 147 ESLFEYQHVMRNNIKQRIRNILK-----SRQIGATYYFSGEALEDAILTGDNQIFLSA-S 200
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHCSLGID 165
Q EV + + K + +++ + +
Sbjct: 201 RAQA------EVFRSYIIAIGKEFLDIELTGNPITLSNGAELRFLSTNSKTAQSYHGHVY 254
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
Y + + + + + H + + +S + A+R +
Sbjct: 255 VDEYFWIPKFDELNKLASAMATHKKWRKTYFSTPSSKMHQAYPFWTGDSWKKGKASREKL 314
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
I+ G D + + Y +D
Sbjct: 315 EFPTFAEFRD--GGRLCDDKQWRYVVTIEDAANGGCDLFDIDELREEYSVDD--FNNLFM 370
Query: 286 GQFPQQDIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVL 336
F + F ++ ++ A ++ P P + +G D + + +VV+
Sbjct: 371 CMFVDGSLSVFKFSDLEKGMVDAAHWQDFKPKNKQPFEHREVWLGYDPSRTRDNACLVVV 430
Query: 337 R------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
+ W + + ++I + ++Y+ I +D G D +
Sbjct: 431 APPAVVVEKFRVLEKHYWKGLNFQYHVSEIDKVFKRYKVTYIGVDTTGIGGGVWDLISKK 490
Query: 391 GYHVYRVLGQKRAVDLEFCRNR-RTELHVKMADWLEFASLINHSG---LIQNLKSLKSFI 446
R N + L +KM D +E L + + S+K
Sbjct: 491 ---------YPREAHAIHYSNENKNRLVMKMIDVVEANRLQFDAEHKDIAMAFMSIKRVP 541
Query: 447 VPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + +++R + D + + P
Sbjct: 542 TSSGNAMTFKAERNQTTGHADAFWAISHAIINEP 575
>gi|194444881|ref|YP_002043300.1| hypothetical protein SNSL254_A4364 [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194403544|gb|ACF63766.1| putative conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
Length = 589
Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/477 (12%), Positives = 118/477 (24%), Gaps = 70/477 (14%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
F+E + L + I R IG T A L + A S+
Sbjct: 141 FLEQSFDYQLEWWRAGLAHRIR-HILKSRQIGATFYFAREALLQALKTGHNQIFLSA-SK 198
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL----------HPAPWYSDVLHCSLGIDSK 167
TQ K++ + E+ + + + +
Sbjct: 199 TQAY-----VFRKYIIAFARQAGVELTGDPIVLGNNGAELMFLGTNANTAQSHNGDLYVD 253
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ +R + + +S A FW
Sbjct: 254 EIFWIPNFQKLKRVAGGMSSQEHLRTTYFSTPSS--------------LAHGAYPFWSGE 299
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR----------YGLDS 277
+ S + + + E +A+ +S
Sbjct: 300 QFNKGRSDTSERVDIDISHAALAKGVACPDGQWRQIVTIEDALAKGCTLFNIDTLKRENS 359
Query: 278 -DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP----------YAPLIMGCDIAE 326
D R +F F + ++ + + P+ +G D +
Sbjct: 360 VDEFRNLFMCEFVDDKASVFPFEELQRCMVDSLEKWEDYAPFADRPFGHRPVWIGYDPSL 419
Query: 327 EGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G VV+ I W D I L +KY + I IDA G
Sbjct: 420 RGDSAGCVVIAPPVVAGGKFRILERHQWKGMDFAQQAESIRELTQKYTVEYIGIDATGLG 479
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQ 437
+ A ++ + +T + +K D + L + + Q
Sbjct: 480 QGVFQLVR---------SFYPAAREIRYTPEMKTAMVLKAKDTIRRGCLEYDVSATDITQ 530
Query: 438 NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQ 494
+ S++ + + E+ R + A D + M+ P + +
Sbjct: 531 SFMSIRKTMTSSGRSSTYEASRTEEASHADLAWATMHVLINEPLTAATGEQSSSIME 587
>gi|327198086|ref|YP_004306453.1| gp41 [Burkholderia phage KL3]
gi|310657220|gb|ADP02334.1| gp41 [Burkholderia phage KL3]
Length = 611
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/464 (10%), Positives = 106/464 (22%), Gaps = 43/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E + + + + K R IG T A + A+
Sbjct: 165 RESLFDYQKVWYRNGDQQTRNILK-----SRQIGATWYFAREAFVDALDTGRNQIFLSAS 219
Query: 116 SET----QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ +A + L + + + Y
Sbjct: 220 KAQAHVFKQYIVQFARDVADVELTGDPIILPNGATLYFLGTNSRTAQSYHGNLYFDEYFW 279
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + H + + + +S T + A I
Sbjct: 280 VPKFRELNTVASGMAMHKRWRLTYFSTPSSTTHEAYAFWSGADANRGRAPSDRIQI--DT 337
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + + G D E + RY + + QF
Sbjct: 338 SHEALVRGMLGEDEQWRQIVTVLDAIEGGCDLFDLERLRRRYSAE--AFANLLMCQFIDD 395
Query: 292 DIDSFIPLNIIEEALNREPCPDPY-----------APLIMGCDIAEEGGDNTVVVL---- 336
+ F + ++ + +G D A G +VV+
Sbjct: 396 SVSVFKLAELQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALTGDSAGLVVVAPPR 455
Query: 337 --RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
+ + D I + ++Y I ID G +
Sbjct: 456 VEGGTFRVLERHQFRGNDFEEQAAAIEQITQRYNVGYIAIDTTGMGQGVYQLVRKFYPAA 515
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L +K + +
Sbjct: 516 VALNYSPE---------VKTRLVLKGQSVIRNGRLQFDAGWTDLAAAFMGIKQTMTASGR 566
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ R + D + ++ + P + D ++
Sbjct: 567 HATYTADRNEETGHADLAWACLHA-IDREPLAGGDINSSSFTEF 609
>gi|229125159|ref|ZP_04254306.1| hypothetical protein bcere0016_54220 [Bacillus cereus 95/8201]
gi|228658294|gb|EEL13987.1| hypothetical protein bcere0016_54220 [Bacillus cereus 95/8201]
Length = 164
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 14/137 (10%)
Query: 357 NNKISGLVEKYRPD-AIIIDANNTGARTCDYLEM------LGYHVYRVLGQKRAVDLEFC 409
K E+ I ID G D L+ V + +
Sbjct: 11 AKKYFSWCERTGKRIPIRIDDTGVGGGVTDRLKEVVAENDYPIDVIPINFASKG--NAEY 68
Query: 410 RNRRTELHVKMAD-WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKS 465
+ ++ D LEF S+ + LI L S++ + + + G + IE K + +G KS
Sbjct: 69 ACIVSVMYGHFKDNCLEFVSIPDDEDLIAQL-SVRKYQINSDGRIKIEPKKAMKDRGLKS 127
Query: 466 TDYSDGLMYTFAENPPR 482
D ++ ++ FA P+
Sbjct: 128 PDRAEAVVMAFAPFYPK 144
>gi|226941496|ref|YP_002796570.1| Terminase [Laribacter hongkongensis HLHK9]
gi|226716423|gb|ACO75561.1| Terminase [Laribacter hongkongensis HLHK9]
Length = 578
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 52/466 (11%), Positives = 114/466 (24%), Gaps = 44/466 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E + H L + + I R IG T A L + A+
Sbjct: 132 RERLFGYQKHWLRAGHLARIRN----ILKSRQIGATWYFALEALLDALETGRNQIFLSAS 187
Query: 116 SETQLK-----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
L+ +EV +K F + + + Y
Sbjct: 188 KRQALQFQSYQKAFVSEVCDIELKGSDKILFGNGAELIFLGTSSRTAQSYHGNLYMDEYF 247
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ + + + + ++ + I
Sbjct: 248 WTPKFAELRKVAAGMASQKRWRQTYFSTPSTLAHEAYPFWSGKRYNAGRPASVQIAFDLS 307
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ ++ W++ + + R D R +F
Sbjct: 308 HK---ALAGGLDQGDGQWRQI-VTIHDALRQGCDLFDLDALRLENSPDEFRQLFECEFID 363
Query: 291 QDIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDIAEEGGDNTVVVL--- 336
F PL+++ + P + + +G D +E G +VV+
Sbjct: 364 DGKSVF-PLSMLHRCMVDSMEAWPDYNPFTLRPLGHREVWIGYDPSESGDSAAMVVVAPP 422
Query: 337 ---RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH 393
+ + D I ++YR I ID G+ +
Sbjct: 423 AVPDGPFRLLECRQFRGLDYSAQAQAIKEATDRYRVTHIAIDRTGLGSAVHQLVTQ---- 478
Query: 394 VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNT 450
A+ ++ + +T + +K D + L + + + ++ +
Sbjct: 479 -----FFPAAMGYQYSLDLKTRMVLKGLDVIRHGRLQFDAGAKEIAASFMAI-HRSTTGS 532
Query: 451 GELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYE 496
G + + R + D + + T P Y
Sbjct: 533 GLVTFVADRSEAVSHADIAWATLQTLYNEPLEGRNAGNAGFVEIYS 578
>gi|167839678|ref|ZP_02466362.1| phage terminase, ATPase subunit [Burkholderia thailandensis MSMB43]
Length = 589
Score = 103 bits (257), Expect = 6e-20, Method: Composition-based stats.
Identities = 43/464 (9%), Positives = 105/464 (22%), Gaps = 42/464 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A L + A+
Sbjct: 143 RDSLFDYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREALVDALETDRNQIFLSAS 197
Query: 116 S-ETQLKTTLWAEVSKW---LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ + + ++ + + + Y
Sbjct: 198 KAQAHVFKQYITQFAREAADIEFTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFW 257
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + + H + + +S T + A I
Sbjct: 258 VPKFRELNKVASGMAMHKRWRKTYFSTPSSITHEAYAFWSGSHANRGRAAGERIQI--DT 315
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + + G D + + Y + + F
Sbjct: 316 SHEALVRGMLCEDAQWRQIVTVLDAMAGGCDLFDIDELRREYSAEE--FANLLMCHFIDD 373
Query: 292 DIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDIAEEGGDNTVVVL---- 336
+ F ++ ++ + + +G D A G +VV+
Sbjct: 374 SLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAGLVVVAPPR 433
Query: 337 RRG--PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G + + D I + +Y I ID G +
Sbjct: 434 VDGGAFRVLERHQFRGNDFEEQAAAIEAITRRYNVGYIAIDTTGMGQGVYQLVCKFFPAA 493
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ +T L +K + L + L ++K + +
Sbjct: 494 VALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGR 544
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R D + ++ P + Y
Sbjct: 545 QATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 588
>gi|256819733|ref|YP_003141012.1| hypothetical protein Coch_0896 [Capnocytophaga ochracea DSM 7271]
gi|256581316|gb|ACU92451.1| hypothetical protein Coch_0896 [Capnocytophaga ochracea DSM 7271]
Length = 450
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 56/413 (13%), Positives = 122/413 (29%), Gaps = 37/413 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL--LPNKHWF 141
+G GK+ + L+L G L+ + + L+ +P + W
Sbjct: 35 GAKGGGKSFIGCSLILADALMYAGTQYFIARKQLNDLRRFTIPSIHEVLNGWGIPQEAWK 94
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ S VL +R + +E
Sbjct: 95 YNGQDNYFELYNSSRVLLLDCKYLPSD-------PQYQRLGSMQFTRG------WIEEGG 141
Query: 202 GTPDVINLGILGFL-----TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
+ + E N ++T+NP + + + +
Sbjct: 142 EFDYDSYSNLKISIGRWKNREYNLKGKLLITANPSKNFLYKEFYTPYKEGTLNKRRAFIQ 201
Query: 257 TVEGIDPSFHEGIIA--RYGLDSDVTRVEVCGQF-PQQDIDSFIPLNIIEEALNREPCPD 313
+ + + I L + + G + D +S + I N + P
Sbjct: 202 ALPYDNKMLPKEYIQNLENTLRGAEKQRLLNGLWEYDDDPNSLCDYDKILAIFNNDQLPK 261
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD--A 371
+ DIA G D V+ + +G + ++ + + I+ L KY
Sbjct: 262 ESTTYLTA-DIARFGSDLCVIGVWQGWELIEVYTLATSATTEIQALINTLRMKYNIPKGN 320
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN 431
I D + G D ++G+ ++ +N +T+ K+A+ + +
Sbjct: 321 CIADEDGVGGGVVDNTGIVGFKNNSTPFEENGQ-PTNYKNLQTQCLYKLAERINSNGIYI 379
Query: 432 HSGLIQN------LKSLKSFIVPNTG-ELAIESK---RVKGAKSTDYSDGLMY 474
+ + + + + G L++ +K + +S DY D L+
Sbjct: 380 SAEVSERTKEMIIEEIEQIKSDNKDGQRLSVINKDTVKQAIGRSPDYRDMLLM 432
>gi|145639982|ref|ZP_01795581.1| terminase, ATPase subunit [Haemophilus influenzae PittII]
gi|145270948|gb|EDK10866.1| terminase, ATPase subunit [Haemophilus influenzae PittII]
gi|309751635|gb|ADO81619.1| Probable bacteriophage terminase, ATPase subunit [Haemophilus
influenzae R2866]
Length = 591
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 51/432 (11%), Positives = 118/432 (27%), Gaps = 35/432 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET--QLKTTLWAEVSKW--LSLLPN 137
I R IG T A T + A+ + Q ++ + + + L
Sbjct: 168 ILKSRQIGATYYFAHEAFIDALTTGHNQIFLSASKKQALQFRSYIVNYAKQTADVDLKGE 227
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + + + + + + Y +
Sbjct: 228 TIKLPNGAELIFLGTNSATAQSYHGNLYFDEVFWVPKFDVMRKVASGMAAQKMYRQTYFS 287
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
+ + A + + I+
Sbjct: 288 TPTTIAHPAYAFFSGKAFNKNRAKADKVEI--DISHENLRIGKLCADRQWKQIVTINDAM 345
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
G + + +IA + QF + +F ++ ++ Y P
Sbjct: 346 EGGCNLFNIDDLIAENSKEE--FEQLFLCQFADDNTSAFKFADLQLCQVDSLEEWHDYKP 403
Query: 318 ----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKIS 361
+ +G D A G + ++ + H + D ++I
Sbjct: 404 FYQRPFGNREVWLGYDPAFTGDRAALAIIAPPKVEGGDYRVLHWQTFHGMDYEAQASRIK 463
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ Y I+ID G+ ++ A+ L++ + + E+ +K
Sbjct: 464 SFCDDYNVTRIVIDKTGMGSGVFQEVK---------KFYPMAIGLDYNADLKNEMVLKTQ 514
Query: 422 DWLEFASLINH-SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ ++ L + +I + ++K + TG++ S R + A D S +M P
Sbjct: 515 NLIQKRRLKFDGNEIITSFMTVKK-RITGTGKITYVSDRSEDASHGDLSWAIMNCILNVP 573
Query: 481 PRSDMDFGRCPS 492
D S
Sbjct: 574 YGLGGDVSSNQS 585
>gi|331650684|ref|ZP_08351739.1| conserved hypothetical protein [Escherichia coli M605]
gi|331040472|gb|EGI12647.1| conserved hypothetical protein [Escherichia coli M605]
Length = 414
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 49/373 (13%), Positives = 107/373 (28%), Gaps = 48/373 (12%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R +G + L L + + + E + +T + W + F
Sbjct: 46 SREMGLSWTAIGLACSLCLFNKEMVIGFGSRKEEYVDSTGDPKALFWKAR-----KFVET 100
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
W + ++ + + + + + DEA+
Sbjct: 101 LPVEFRGSWSEKKHAPYMRVEFPETGAVIKGEAGDNIG-----RGDRTTLYLVDEAAFL- 154
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
L I L+ R I S+ ++ F + + F R D
Sbjct: 155 -QRPLLIDAALS--QTTRCRIDLSSVNGMANPFAQKRH--GGKIPVFTFHWRDDPRKDEE 209
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIMGC 322
++ + + V E+ + IP ++ ++ P +
Sbjct: 210 WYRRECEKID-NPVVVAQELDLNYSASAEGVLIPSEWVQATVDAHIKLGIQPTGKRLGAM 268
Query: 323 DIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D+A+EG D R G ++E++ +WS +D+ + K+ G E+ + D + G
Sbjct: 269 DVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDNLEEFRFDEDGLG 328
Query: 381 ARTCDYLEMLGY---------------------------HVYRVLGQKRAVDLEFCRNRR 413
A + V GQ ++ +F N +
Sbjct: 329 AGVRGDARAINELRNVARRPSILATPFRGSGAVFDPDDEAVRGDNGQAARLNKDFFANAK 388
Query: 414 TELHVKMADWLEF 426
+ ++ +
Sbjct: 389 AQSWWRLRKLFQN 401
>gi|167900122|ref|ZP_02487523.1| Putative ATPase subunit of terminase (gpP-like) protein
[Burkholderia pseudomallei 7894]
Length = 589
Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/466 (9%), Positives = 107/466 (22%), Gaps = 50/466 (10%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + + + K R IG T A + A+
Sbjct: 143 RDSLFGYQKVWYRNGDQRTRNILK-----SRQIGATWYFAREAFVDALDTGRNQIFLSAS 197
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHW------FEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
++++ + + Y
Sbjct: 198 KAQA--HVFKQYITQFARDAADIELTGDPIVLPSGATLYFLGTNARTAQSYHGNFYFDEY 255
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ + + + + H + + +S T + G R + +
Sbjct: 256 FWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFW-SGAHANRGRAAGDRIQID 314
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ ++ + G + + + Y + + F
Sbjct: 315 TSHEALVRGKLCEDAQWRQIV-TVLDAMAGGCNLFDIDELRREYSAEE--FANLLMCHFI 371
Query: 290 QQDIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDIAEEGGDNTVVVL-- 336
+ F + ++ + + +G D A G +VV+
Sbjct: 372 DDSLSVFKLAELQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAGLVVVAP 431
Query: 337 --RRG--PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
G + + D I + ++Y I ID G +
Sbjct: 432 PRVDGGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFP 491
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPN 449
+ +T L +K + L + L ++K + +
Sbjct: 492 AAVALNYSPE---------VKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTAS 542
Query: 450 TGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ + R + D + ++ R + G S +
Sbjct: 543 GRQATYTAGRSEETGHADLAWACLHA----IDREPLAGGGPNSSSF 584
>gi|226939350|ref|YP_002794423.1| Terminase [Laribacter hongkongensis HLHK9]
gi|226714276|gb|ACO73414.1| Terminase [Laribacter hongkongensis HLHK9]
Length = 578
Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 53/466 (11%), Positives = 114/466 (24%), Gaps = 44/466 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E + H L + + I R IG T A L + A+
Sbjct: 132 RERLFGYQKHWLRAGHLARIRN----ILKSRQIGATWYFALEALLDALETGRNQIFLSAS 187
Query: 116 SETQLK-----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
L+ +EV +K F + + + Y
Sbjct: 188 KRQALQFQSYQKAFVSEVCDIELKGSDKILFGNGAELIFLGTSSRTAQSYHGNLYMDEYF 247
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ + + + + ++ + I
Sbjct: 248 WTPKFAELRKVAAGMASQKRWRQTYFSTPSTLAHEAYPFWSGKRYNAGRPASEQIAFDLS 307
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ ++ W++ + + R D R +F
Sbjct: 308 HK---ALAGGLDQGDGQWRQI-VTIHDALRQGCDLFDLDALRLENSPDEFRQLFECEFID 363
Query: 291 QDIDSFIPLNIIEEALNREPCPDP-----------YAPLIMGCDIAEEGGDNTVVVL--- 336
F PL+++ + P + + +G D +E G +VV+
Sbjct: 364 DGKSVF-PLSMLHRCMVDSMEAWPDYNPFTLRPLGHREVWIGYDPSESGDSAAMVVVAPP 422
Query: 337 ---RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH 393
+ + D I E+YR I ID G+ +
Sbjct: 423 AVPDGPFRLLECRQFRGLDYSAQAQAIKEATERYRVTHIAIDRTGLGSAVHQLVTQ---- 478
Query: 394 VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNT 450
A+ ++ + +T + +K D + L + + + ++ +
Sbjct: 479 -----FFPAAMGYQYSLDLKTRMVLKGLDVIRHGRLQFDAGAKEIAASFMAI-HRSTTGS 532
Query: 451 GELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYE 496
G + + R + D + + T P Y
Sbjct: 533 GLVTFVADRSEAVSHADIAWATLQTLYNEPLEGRNAGNAGFVEIYS 578
>gi|260769184|ref|ZP_05878117.1| terminase ATPase subunit [Vibrio furnissii CIP 102972]
gi|260614522|gb|EEX39708.1| terminase ATPase subunit [Vibrio furnissii CIP 102972]
Length = 574
Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 53/457 (11%), Positives = 125/457 (27%), Gaps = 50/457 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
++ + NP F+ + + R IG T A+ V
Sbjct: 126 DEFREKTFFEYQKDIHAHKCNPELNEFRFYLKS-RQIGLTYYFAYEAFEDAVLNDDNQVF 184
Query: 112 CLAN-SETQLKTTLWA----EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
A+ ++++ E+ ++ + + + +
Sbjct: 185 LSASRKQSEIFKNYIRRFALEIGDVELKGKDELQLSNGATFYFLSTNARTSQGFNGHVYF 244
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ + + + H+ Y ++ ++ + G + +
Sbjct: 245 DEVFWIPKFGELDDYAGGMSIHDKYRTTYLSTPSTVAHEAYPKW-QGKKEQGIDISHSAL 303
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
+ + G F +I ID +G E + +Y D V +
Sbjct: 304 KNGSLGVDGIFRQI----------ITIDDAIEKGATFFNMEKLRRKYP-DKTVFDNLLRC 352
Query: 287 QFPQQDIDSFIPLNIIEEALN---------REPCPDPYAPLIMGCDI-----AEEGGDNT 332
F F ++ + + P A +++G D E D
Sbjct: 353 VFLDDSASIFALKALLACKTDSSLWKDVDHNKARPAGNAEVLVGYDPRGGGQGEGSDDAG 412
Query: 333 VVV----LRRG--PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
+VV R+G + + I + EKY + ID + G+ +
Sbjct: 413 LVVALKPKRKGGVFRLIERARLKGSSYEQQALAIKAMTEKYNVVHLAIDVSGVGSAVAEL 472
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLK 443
+ ++L++ + + K + + L L+ + ++
Sbjct: 473 VR---------KFYPSLIELDYSPEVKRMMVYKAREIINDGRLQFDGEWDDLVHSFLMIR 523
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ ++ S R K D + M+ P
Sbjct: 524 QQTTKASNQVTFISNRSKVGSHADLAWASMHVMHWEP 560
>gi|261494619|ref|ZP_05991100.1| terminase ATPase subunit [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261309731|gb|EEY10953.1| terminase ATPase subunit [Mannheimia haemolytica serotype A2 str.
OVINE]
Length = 612
Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 53/461 (11%), Positives = 118/461 (25%), Gaps = 55/461 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
+Q ++ E H + + I R IG T A L
Sbjct: 162 LDGMFHYQKKWHEAGLTHRIRN------------ILKSRQIGATYYFAHEALVDALVTGR 209
Query: 108 ISVICLANSETQLK----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
+ A+ + L+ +A+ + L +S +
Sbjct: 210 NQIFISASKKQALQFRAYIVAYAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGN 269
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL--TERNAN 221
+ + R + + Y + + +S T L A
Sbjct: 270 LYFDEIFWVNRFEEIRKVAAGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAE 329
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ I S+ +G + I G + E + D
Sbjct: 330 QVEIDISHANLKNG---KKCGDGQWRQIV-NIYDAEAGGCNLFDIEQLKLENSPDE--FE 383
Query: 282 VEVCGQFPQQDIDSF----------IPLNIIEE--ALNREPCPDPYAPLIMGCDIAEEGG 329
+F + F + + + + P + +G D + G
Sbjct: 384 QLFMCEFIDDNQSVFKFTMMQRCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGD 443
Query: 330 DNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
+ +VV+ + + D +I + KY + ID G
Sbjct: 444 RSALVVIAPPKVDGGKFRLLEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTTGLGVGV 503
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS----GLIQNL 439
+ ++ + ++++ +K D + S + +
Sbjct: 504 YEIVKKERPDAVALTYNVE---------LKSKMVLKGLDIISKGRFEFDSMHAVEVGASF 554
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
++K I + ++ + R + A D + + F P
Sbjct: 555 MAIKKQITNSGRQVTYVADRSEEASHADLAWACLQVFINEP 595
>gi|59712621|ref|YP_205397.1| terminase, ATPase subunit [Vibrio fischeri ES114]
gi|59480722|gb|AAW86509.1| terminase, ATPase subunit [Vibrio fischeri ES114]
Length = 588
Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/460 (9%), Positives = 110/460 (23%), Gaps = 32/460 (6%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
++ + N F+ + + R IG T A+ V
Sbjct: 141 DFREKTFFAYQKDIHAQKCNDELNEFRFYLKS-RQIGLTYYFAFEAFEDAIINGDNQVFL 199
Query: 113 LAN-SETQLKTTLWA----EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
A+ ++++ E+ ++ + + + +
Sbjct: 200 SASRKQSEIFKNYIRKFALEIGDVELKGKDELQLSNGATLYFLSTNARTSQGFNGHVYFD 259
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + + + + Y ++ ++ + + +
Sbjct: 260 EVFWIPKFGELDDYAGGMSIQSKYRTTYLSTPSTTAHEAYPKWTGDK-SLGIDISHKALK 318
Query: 228 SNPRRLSGKFYEIFNKP---LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD--SDVTRV 282
G F +I F +D + D S ++ LD S +
Sbjct: 319 KGSLGSDGIFRQIITIDDAIEGGATFFNMDKLRRKYPDKSVFNNLLRCVFLDDASSFFSI 378
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN------TVVVL 336
+ + + R Y P G E D ++
Sbjct: 379 KSLLACKTDTDNWKDVDLESLHPVGRREVLVGYDPR--GGGQGEGADDAGLIVSLKPIIK 436
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ I + +KY + ID G+ + +
Sbjct: 437 GGAFRFIERVRLKGSSYEDQAAAIEAICKKYNVVYLAIDVGGVGSAVAELVR-------- 488
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGEL 453
L++ + + K + + L L+ + ++ + ++
Sbjct: 489 -KFYPGLTTLDYSPEMKRMMAYKAREIINAGRLQFDNEWDDLVHSFLMIRQHTTKMSNQI 547
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
S R K D + M+ P D S+
Sbjct: 548 TFVSARNKVGSHADLAWAAMHVLHWEPIDILRDDSTTVSF 587
>gi|109289938|ref|YP_655470.1| terminase ATPase subunit [Mannheimia phage phiMHaA1]
gi|90110544|gb|ABD90554.1| terminase ATPase subunit [Mannheimia phage phiMhaA1-PHL101]
gi|90110594|gb|ABD90603.1| terminase ATPase subunit [Mannheimia phage phiMhaA1-BAA410]
Length = 605
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/461 (11%), Positives = 118/461 (25%), Gaps = 55/461 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
+Q ++ E H + + I R IG T A L
Sbjct: 155 LDGMFHYQKKWHEAGLTHRIRN------------ILKSRQIGATYYFAHEALVDALVTGR 202
Query: 108 ISVICLANSETQLK----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
+ A+ + L+ +A+ + L +S +
Sbjct: 203 NQIFISASKKQALQFRAYIVAYAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGN 262
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL--TERNAN 221
+ + R + + Y + + +S T L A
Sbjct: 263 LYFDEIFWVNRFEEIRKVAAGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAE 322
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ I S+ +G + I G + E + D
Sbjct: 323 QVEIDISHANLKNG---KKCGDGQWRQIV-NIYDAEAGGCNLFDIEQLKLENSPDE--FE 376
Query: 282 VEVCGQFPQQDIDSF----------IPLNIIEE--ALNREPCPDPYAPLIMGCDIAEEGG 329
+F + F + + + + P + +G D + G
Sbjct: 377 QLFMCEFIDDNQSVFKFTMMQRCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGD 436
Query: 330 DNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
+ +VV+ + + D +I + KY + ID G
Sbjct: 437 RSALVVIAPPKVDGGKFRLLEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTTGLGVGV 496
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS----GLIQNL 439
+ ++ + ++++ +K D + S + +
Sbjct: 497 YEIVKKERPDAVALTYNVE---------LKSKMVLKGLDIISKGRFEFDSMHAVEVGASF 547
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
++K I + ++ + R + A D + + F P
Sbjct: 548 MAIKKQITNSGRQVTYVADRSEEASHADLAWACLQVFINEP 588
>gi|254360872|ref|ZP_04977019.1| bacteriophage terminase large subunit [Mannheimia haemolytica
PHL213]
gi|153092346|gb|EDN73415.1| bacteriophage terminase large subunit [Mannheimia haemolytica
PHL213]
Length = 600
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/461 (11%), Positives = 118/461 (25%), Gaps = 55/461 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
+Q ++ E H + + I R IG T A L
Sbjct: 150 LDGMFHYQKKWHEAGLTHRIRN------------ILKSRQIGATYYFAHEALVDALVTGR 197
Query: 108 ISVICLANSETQLK----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
+ A+ + L+ +A+ + L +S +
Sbjct: 198 NQIFISASKKQALQFRAYIVAYAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGN 257
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL--TERNAN 221
+ + R + + Y + + +S T L A
Sbjct: 258 LYFDEIFWVNRFEEIRKVAAGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAE 317
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ I S+ +G + I G + E + D
Sbjct: 318 QVEIDISHANLKNG---KKCGDGQWRQIV-NIYDAEAGGCNLFDIEQLKLENSPDE--FE 371
Query: 282 VEVCGQFPQQDIDSF----------IPLNIIEE--ALNREPCPDPYAPLIMGCDIAEEGG 329
+F + F + + + + P + +G D + G
Sbjct: 372 QLFMCEFIDDNQSVFKFTMMQRCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGD 431
Query: 330 DNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
+ +VV+ + + D +I + KY + ID G
Sbjct: 432 RSALVVIAPPKVDGGKFRLLEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTTGLGVGV 491
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS----GLIQNL 439
+ ++ + ++++ +K D + S + +
Sbjct: 492 YEIVKKERPDAVALTYNVE---------LKSKMVLKGLDIISKGRFEFDSMHAVEVGASF 542
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
++K I + ++ + R + A D + + F P
Sbjct: 543 MAIKKQITNSGRQVTYVADRSEEASHADLAWACLQVFINEP 583
>gi|315181719|gb|ADT88632.1| terminase, ATPase subunit [Vibrio furnissii NCTC 11218]
Length = 574
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 53/457 (11%), Positives = 125/457 (27%), Gaps = 50/457 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
++ + NP F+ + + R IG T A+ V
Sbjct: 126 DEFREKTFFEYQKDIHAHKCNPELNEFRFYLKS-RQIGLTYYFAYEAFEDAVLNGDNQVF 184
Query: 112 CLAN-SETQLKTTLWA----EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
A+ ++++ E+ ++ + + + +
Sbjct: 185 LSASRKQSEIFKNYIRRFALEIGDVELKGKDELQLSNGATFYFLSTNARTSQGFNGHVYF 244
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ + + + H+ Y ++ ++ + G + +
Sbjct: 245 DEVFWIPKFGELDDYAGGMSIHDKYRTTYLSTPSTVAHEAYPKW-QGKKEQGIDISHAAL 303
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
+ + G F +I ID +G E + +Y D V +
Sbjct: 304 KNGSLGVDGIFRQI----------ITIDDAIEKGATFFNMEKLRRKYP-DKTVFDNLLRC 352
Query: 287 QFPQQDIDSFIPLNIIEEALN---------REPCPDPYAPLIMGCDI-----AEEGGDNT 332
F F ++ + + P A +++G D E D
Sbjct: 353 VFLDDSASIFALKALLACKTDSSLWKDVDHNKARPAGNAEVLVGYDPRGGGQGEGSDDAG 412
Query: 333 VVV----LRRG--PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
+VV R+G + + I + EKY + ID + G+ +
Sbjct: 413 LVVALKPKRKGGVFRLIERARLKGSSYEQQALAIKAMTEKYNVVHLAIDVSGVGSAVAEL 472
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLK 443
+ ++L++ + + K + + L L+ + ++
Sbjct: 473 VR---------KFYPSLIELDYSPEVKRMMVYKAREIINDGRLQFDGEWDDLVHSFLMIR 523
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ ++ S R K D + M+ P
Sbjct: 524 QQTTKASNQVTFISNRSKVGSHADLAWASMHVMHWEP 560
>gi|229845311|ref|ZP_04465443.1| terminase, ATPase subunit [Haemophilus influenzae 6P18H1]
gi|229811764|gb|EEP47461.1| terminase, ATPase subunit [Haemophilus influenzae 6P18H1]
Length = 593
Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/437 (13%), Positives = 123/437 (28%), Gaps = 43/437 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET--QLKTTLWAEVSKW--LSLLPN 137
I R IG T A T + A+ + Q ++ + + + L
Sbjct: 168 ILKSRQIGATYYFAHEAFIDALTTGHNQIFLSASKKQALQFRSYIVNYAKQTADVDLKGE 227
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + + + + + + Y +
Sbjct: 228 TIKLPNGAELIFLGTNSATAQSYHGNLYFDEVFWVPKFDVMRKVASGMAAQKMYRQTYFS 287
Query: 198 DEASGTPDVINLGILGFLTE--RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
+ + + I S+ SGK WK+
Sbjct: 288 TPTTIAHPAYAFFSGKAFNRNRAKSEKIEIDISHENLKSGKLCADR-----QWKQIVSIY 342
Query: 256 RTVEGIDPSF-HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+EG F + +IA + QF + +F ++ ++
Sbjct: 343 DAMEGGCNLFNIDDLIAENSKEE--FEQLFLCQFADDNSSAFKFADLQLCQVDSLEEWHD 400
Query: 315 YAP----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNN 358
Y P + +G D A G +V++ + H + D T +
Sbjct: 401 YKPFYQRPFGNREVWLGYDPAFTGDRAALVIVAPPKVEGGDYRVLHKQTFHGMDYETQAS 460
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+I E Y I+ID G + A LE+ + + E+ +
Sbjct: 461 RIKQFCEDYNVTRIVIDKTGMGTGVYQEVR---------KFYPMAQGLEYNADLKNEMVL 511
Query: 419 KMADWLEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K + ++ L + ++ + ++K + TG++ S + A D S +M
Sbjct: 512 KTQNLIQKRRLKFDSGDNDIVSSFMTVKK-RITGTGKITYVSDPSEDASHGDLSWAIMNC 570
Query: 476 FAENPPRSDMDFGRCPS 492
P D S
Sbjct: 571 ILNVPYGLGGDVSSNKS 587
>gi|269836053|ref|YP_003318281.1| hypothetical protein Sthe_0020 [Sphaerobacter thermophilus DSM
20745]
gi|269785316|gb|ACZ37459.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
20745]
Length = 497
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/463 (13%), Positives = 120/463 (25%), Gaps = 86/463 (18%)
Query: 27 SFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGR 86
F FP PR +Q E M V A + I R
Sbjct: 16 DPVAFARALFP----------SRRPRRYQAEPMRAVAAAVVARARGDRSHPADFGIVFSR 65
Query: 87 GIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GK A L+ +L++ R G S++ + + L + +
Sbjct: 66 QAGKDEALAQLIAYLLTLFQRAGGSIVVALPTLR-------PQGILARDRLIER-LTCER 117
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ +L P D LG + H+ + + + ++ +E
Sbjct: 118 ARALGLRPRVQDGTIVRLGRAACHFVSAGPQSNARGQTA--------SLLLVANECQDIR 169
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-----KPLDDWKRFQIDTRTVE 259
+ + M + + ++ + + F++ + V
Sbjct: 170 PERWDSVFAPMAASTDAVTLSMGTVWTADTLLARQMRHLAALEAEDGRRRLFRVPWQVVA 229
Query: 260 GIDP---SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN---------------- 300
P + E IA G D R E F P
Sbjct: 230 QEVPSYGRYVERQIALLGADHPFIRTEYELLELDGQGGLFPPSRQGQMQGDHPPLTRAVP 289
Query: 301 ------IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV-------IEHLFD 347
+++ A E DP D A + V+R + +
Sbjct: 290 GEEYALLLDVAGEEEESVDPGRAY----DPAARRDSTALTVVRVVHQDARPRYEVVRRYL 345
Query: 348 WSKTDLRTTNNKISGLVEK-YRPDAIIIDANNTGARTCDYLEML--GYHVYRVLGQKRAV 404
W+ + ++ L +R +++DA GA +L V + +
Sbjct: 346 WTGVKHTALHAQLVDLARHVWRARYVVVDATGVGAGLASFLRASLGDRAVLPFIFSLTS- 404
Query: 405 DLEFCRNRRTELHVKMADWLEFASLIN-----HSGLIQNLKSL 442
+++L ++ + L +L
Sbjct: 405 --------KSQLGWSFLSAVDSGRFKDHAPAPDDPEASALAAL 439
>gi|284008602|emb|CBA75192.1| phage terminase protein [Arsenophonus nasoniae]
Length = 598
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 59/471 (12%), Positives = 126/471 (26%), Gaps = 53/471 (11%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAIS---AGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
E + L + A+ R IG T A+ +
Sbjct: 144 AEDFQQFADERLFAYQKHLRINMTQAVRNILKSRQIGATWYFAYEAFENACLTADPQIFL 203
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHCS 161
A S Q EV + + + +F + + + S
Sbjct: 204 SA-SRPQA------EVFRAYIVNIAEKFFGVTLTGNPIRLSNGAELRFLSTNKNTAQSYS 256
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
+ Y + + + H+ + ++ +S T ++
Sbjct: 257 GHLYCDEYLWVPDFKRLNDVASAMATHDKWRTTYLSTPSSKTHGGYPFWTGDEWRGQDPK 316
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
R I + + + + ++ G + + + + RY D+ +
Sbjct: 317 RKNITFPSVDDMRDG-GRVCPDGQWRY-VITLEDAIKGGFNLASIDKLRQRYNPDT--FK 372
Query: 282 VEVCGQFPQQDIDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNT 332
+ F + F + ++ L + P P + G D A G +T
Sbjct: 373 MLYMCIFIEHGASVFKYDTLQKCGVDVNLWEDHNPKAPRPFGEREVWGGYDPARSGDTST 432
Query: 333 VVVLR------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V++ I F W R I L +KYR I ID G +
Sbjct: 433 FVIVAPPMMAPEVFRILATFYWQGFSWRHQAKLIEDLTKKYRFTHIGIDTTGIGQSVYEM 492
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCR-NRRTELHVKMADWLEFASLINH---SGLIQNLKSL 442
++ R + +T+L +KM D ++ + + + +
Sbjct: 493 VQD---------FAPRITQPILYSLSMKTQLVMKMIDIVDEERIEWDVEQKEIPASFLCI 543
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
+ + + R + D + + P +D +
Sbjct: 544 RHTTTGKGSAMTFVADRTQETGHADVFWATSHAVIKEPLNTDKKRKSTYHF 594
>gi|83643297|ref|YP_431732.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
gi|83631340|gb|ABC27307.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
Length = 581
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/460 (13%), Positives = 129/460 (28%), Gaps = 50/460 (10%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E ++ + + K R IG T AW T + A
Sbjct: 141 KELFYDYQHRWHDNKSQRTRFILK-----SRQIGATYYFAWEAFQDAITSGDNQIFLSA- 194
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL-------HPAPWYSDVLHCSLGIDSKH 168
S +Q A + K+ + + + L + +
Sbjct: 195 SRSQA-DIFKAYILKFAREYFDTELKGVDVIPLSNGAELRFVSTNGRTAQGYHGHLYIDE 253
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ + + + H + + + + L E ++ S
Sbjct: 254 VFWIPDFDRLNKLASGMAAHKKWRKTYFSTPSVKSHGAYTLWSGERYNESRRHKVEFDLS 313
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
R + + ++ + ++ +G D + + Y F
Sbjct: 314 ---RAALREGQLGPDKVWR-NVVTVEDAANQGCDLFDIDELKQEYTE--AEFNNLFMCAF 367
Query: 289 PQQDIDSFIPLNIIEEAL----------NREPCPDPYAPLIMGCDIAEEGGDNTVVVLR- 337
+ + F +++ A+ R+P P P+ +G D A G +TVVV+
Sbjct: 368 MEAGLSVFKLDDLLSCAVCSSDVWPDFKPRQPRPFANYPVWLGYDPARTGDRSTVVVVAP 427
Query: 338 -----RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
+ K N+I L+ +Y + ID G + ++
Sbjct: 428 PMHPAGKFRVLE-KIQLKGAFSYQANRIKDLLGRYNVQFVGIDCTGPGLGVFEQVKA--- 483
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPN 449
RA + + N +T L +K D +E A + + + Q +K
Sbjct: 484 ------FYPRATPIHYSLNAKTALVLKAMDVIENARIEWDAEHTDIPQAFLQVKQ-TTTG 536
Query: 450 TGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
+ + R D + +M+ + P G
Sbjct: 537 NDLVTYVADRSSKTGHADVAWSIMHALSNEPLDRKQRRGS 576
>gi|83649379|ref|YP_437814.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
gi|83637422|gb|ABC33389.1| Mu-like prophage FluMu protein gp28 [Hahella chejuensis KCTC 2396]
Length = 581
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/460 (13%), Positives = 129/460 (28%), Gaps = 50/460 (10%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E ++ + + K R IG T AW T + A
Sbjct: 141 KELFYDYQHRWHDNKSQRTRFILK-----SRQIGATYYFAWEAFQDAITSGDNQIFLSA- 194
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL-------HPAPWYSDVLHCSLGIDSKH 168
S +Q A + K+ + + + L + +
Sbjct: 195 SRSQA-DIFKAYILKFAREYFDTELKGVDVIPLSNGAELRFVSTNGRTAQGYHGHLYIDE 253
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ + + + H + + + + L E ++ S
Sbjct: 254 VFWIPDFDRLNKLASGMAAHKKWRKTYFSTPSVKSHGAYTLWSGERYNESRRHKVEFDLS 313
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
R + + ++ + ++ +G D + + Y F
Sbjct: 314 ---RAALREGQLGPDKVWR-NVVTVEDAANQGCDLFDIDELKQEYTE--AEFNNLFMCAF 367
Query: 289 PQQDIDSFIPLNIIEEAL----------NREPCPDPYAPLIMGCDIAEEGGDNTVVVLR- 337
+ + F +++ A+ R+P P P+ +G D A G +TVVV+
Sbjct: 368 MEAGLSVFKLDDLLSCAVCSGEVWPDFKPRQPRPFANYPVWLGYDPARTGDRSTVVVVAP 427
Query: 338 -----RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
+ K N+I L+ +Y + ID G + ++
Sbjct: 428 PMHPAGKFRVLE-KIQLKGAFSYQANRIKDLLGRYNVQFVGIDCTGPGLGVFEQVKA--- 483
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPN 449
RA + + N +T L +K D +E A + + + Q +K
Sbjct: 484 ------FYPRATPIHYSLNAKTALVLKAMDVIENARIEWDAEHTDIPQAFLQVKQ-TTTG 536
Query: 450 TGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
+ + R D + +M+ + P G
Sbjct: 537 NDLVTYVADRSSKTGHADVAWSIMHALSNEPLDRKQRRGS 576
>gi|312126991|ref|YP_003991865.1| hypothetical protein Calhy_0759 [Caldicellulosiruptor
hydrothermalis 108]
gi|311777010|gb|ADQ06496.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
108]
Length = 444
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/331 (16%), Positives = 97/331 (29%), Gaps = 29/331 (8%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
AGR GK+T+ V+ +T+ A S Q K + E N +
Sbjct: 53 VAGRRFGKSTVTLIDVVHECATKTKQVWYITAPSIDQAK-IYFQEFE---QRAANNSLLD 108
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+P+ L I + V + EA+
Sbjct: 109 ALVKDFKWSPFPEITLINGSKILGRS-----------TSRNGVYLRGKGADGVAITEAAF 157
Query: 203 TPDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTRTVEG 260
D + I + +RN T N K ++ N +K F E
Sbjct: 158 IKDKVYHDVIRAMVLDRNGVLRLETTPNGMNYVYKLFQEGLNDSTGYYKSFHATVYDNER 217
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE--PCPDPYAPL 318
+D E I R+E +F + D F + E + E P
Sbjct: 218 LDREELERIRREIPE--LAWRIEYLAEFVEDDSFIFPWNLLCEVFDDYELKKEPQNGHRY 275
Query: 319 IMGCDIAEEGGDNTVVVL---RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
+G D+A+ ++VL R I + ++ L KY + +D
Sbjct: 276 SIGVDLAKYQDYTVIIVLDITREPYQIVEYHRYQGRLYTDVVAHVNELQAKYN-ARVYLD 334
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
A G + + + + +++ +
Sbjct: 335 ATGVGDPIAEQVR----NCEPFVFSEKSRNK 361
>gi|293393565|ref|ZP_06637875.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
gi|291423900|gb|EFE97119.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
Length = 572
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 69/474 (14%), Positives = 131/474 (27%), Gaps = 65/474 (13%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
++ + H + + + R IG T A L + A S
Sbjct: 122 VLDSLYEH-QKRWYKQRERRNRFILKS-RQIGATWYFAREALLRALETGNNQIFLSA-SR 178
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQ----------SLSLHPAPWYSDVLHCSLGIDSK 167
Q K++ LL + E++ + + + +
Sbjct: 179 AQAFQ-----FKKFIQLLAAQVGVELKGGDAITLSNGATFYFLGTSAATAQSYTGDLYLD 233
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL--TERNANRFWI 225
+ + + + H + +S + + R A R I
Sbjct: 234 EAFWISNFLNLRKVAAGMATHEGLRRTYFSTPSSEEHEAYQFWTGDLFNKSRRKAERVEI 293
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVE 283
S+ +G+ W++ I+ G + E I G +S
Sbjct: 294 DISHKALKNGRLGG-----DGIWRQIVTIEDAIKLGFNRVKIETIK---GENSPEDYDNL 345
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNR-----EPCPDPYAPL-------IMGCDI--AEEGG 329
+F +F +I ++ P +P+AP +G D G
Sbjct: 346 YRCRFVTVGERAFNYNAMIGCCVDGFNDDVWPDWNPFAPRPIGDRGVWIGYDPNGGSGNG 405
Query: 330 DNTVVVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
D+ +V+ I + I GL E+Y I ID
Sbjct: 406 DSAGLVVIVPPAVAGGKFRIIERVQLRGMEFEEQAKVIEGLTERYNVQHIAIDGTG---G 462
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNL 439
D + L V AV ++ + + +K + L + LIQ+
Sbjct: 463 FGDAVWQLV-----VKFFPLAVKYQYSVQLKRAMVLKALMLVRAGRLELDAGMMDLIQSF 517
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
+++ + S R +G+ D + T N P G S+
Sbjct: 518 MTVRKVQ--KGNVMTYVSDRKRGSNHGDLAWA-SMTALYNEPIGSESGGNNDSF 568
>gi|282599667|ref|ZP_05971423.2| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
gi|282568162|gb|EFB73697.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
Length = 574
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/472 (12%), Positives = 122/472 (25%), Gaps = 59/472 (12%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ + + N + K R IG T A L + A S
Sbjct: 127 LFEYQRQWWDERSQRNRFILK-----SRQIGATWYFAREALLTALETGNNQIFLSA-SRA 180
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSL-------HPAPWYSDVLHCSLGIDSKHYST 171
Q + + L+ + L + + +
Sbjct: 181 QAFQ--FKRFIQLLARQVGVELKGGDEIMLSNGAILFFLGTAAATAQSYTGDLYFDEVFW 238
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN--RFWIMTSN 229
+ R + + + + + +S + F + R I S+
Sbjct: 239 VSRFLELRKVASAMATQSGLRRTYFSTPSSEDHEAYEFWTGDFYNKGKPEKERKIIELSH 298
Query: 230 PRRLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
G + W++ I G++ E I D R +F
Sbjct: 299 KVLKFGHY-----SGDSMWRQIVNIHDAIARGLNRVILEEIKDENPPDD--FRNLYECEF 351
Query: 289 PQQDIDSFIPLNIIEEALNR-----EPCPDPY-------APLIMGCDIAEEGGDNTVVVL 336
+ +F +I ++ PY P+ +G D G + + L
Sbjct: 352 VKTGERAFSYDALINCGVDGYNSHIWSDWKPYAPRPLGNRPVWVGADPTGTGDNGDGLGL 411
Query: 337 RR---------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
I +I + ++Y +I ID L
Sbjct: 412 VIASPPAVSGGKFRIIETVQLRGMAFEKQAEEIRRITQRYNVQSITIDGTGGTGAAVHEL 471
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS----GLIQNLKSLK 443
+ + +L + + +KM + + LI +L ++K
Sbjct: 472 VVKFFPAANLLNYSAP--------IKRMMIMKMQMLIRSGRFEYDAGLHKPLITSLMTIK 523
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+G + ES RV+G D + M F+ S+ ++
Sbjct: 524 KIQ-TPSGIITYESSRVRGLDHGDLAWAAMNIFSNEAISSETGSTGAQVMEF 574
>gi|301155044|emb|CBW14507.1| terminase, atpase subunit [Haemophilus parainfluenzae T3T1]
Length = 591
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 54/433 (12%), Positives = 123/433 (28%), Gaps = 37/433 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET--QLKTTLWAEVSKW--LSLLPN 137
I R IG T A T + A+ + Q ++ + + + L
Sbjct: 168 ILKSRQIGATYYFAHEAFIDALTTGHNQIFLSASKKQALQFRSYIVNYAKQTADVDLKGE 227
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + + + + + + Y +
Sbjct: 228 TIKLPNGAELIFLGTNSATAQSYHGNLYFDEVFWVPKFDVMRKVASGMAAQKMYRQTYFS 287
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
+ + A + ++ WK+
Sbjct: 288 TPTTIAHPAYAFFSGKAFNKNRAKADKVEIDISHENLKSGKLCADR---QWKQIVSIYDA 344
Query: 258 VEGIDPSF-HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+EG F + +IA + QF + +F ++ ++ Y
Sbjct: 345 MEGGCNLFNIDDLIAENSKEE--FEQLFLCQFADDNSSAFKFADLQLCQVDSLEEWHDYK 402
Query: 317 P----------LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKI 360
P + +G D A G + ++ + H + D ++I
Sbjct: 403 PFYQRPFGNREVWLGYDPAFTGDRAALAIIAPPKVEGGDYRVLHWQTFHGMDYEAQASRI 462
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ Y I+ID G+ ++ A+ L++ + + E+ +K
Sbjct: 463 KSFCDDYNVTRIVIDKTGMGSGVFQEVK---------KFYPMAIGLDYNADLKNEMVLKT 513
Query: 421 ADWLEFASLINH-SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAEN 479
+ ++ L + +I + ++K + TG++ S R + A D S +M
Sbjct: 514 QNLIQKRRLKFDGNEIITSFMTVKK-RITGTGKITYVSDRSEDASHGDLSWAIMNCILNV 572
Query: 480 PPRSDMDFGRCPS 492
P + D S
Sbjct: 573 PYGLNGDVSSNRS 585
>gi|322662586|gb|EFY58794.1| terminase-like protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
Length = 280
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/230 (14%), Positives = 70/230 (30%), Gaps = 31/230 (13%)
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE 326
D + + +F F + ++ + + +G D A+
Sbjct: 49 PDEYQNLLMCEFIDDLASVFPLSELQACMVDSWEVWTDFQSLALRPFGWREVWIGYDPAK 108
Query: 327 --EGGDNTVVVLR-------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+ GD+ V+ I W D R + I L ++Y I ID+
Sbjct: 109 GTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDST 168
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---G 434
G + ++ V + N + L +K D + L +
Sbjct: 169 GVGHGVYENVKAFFPAVREFVYNP---------NVKNALVLKAYDIISHRRLEFDAGHTD 219
Query: 435 LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ Q+ +++ + E+ R + A D + M+ P + +
Sbjct: 220 IAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 269
>gi|261492632|ref|ZP_05989185.1| terminase ATPase subunit [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261311791|gb|EEY12941.1| terminase ATPase subunit [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 612
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/461 (11%), Positives = 117/461 (25%), Gaps = 55/461 (11%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
++Q + + H + + I R IG T A L
Sbjct: 162 LDGMFNYQKVWHKAGKEHRIRN------------ILKSRQIGATYYFAHEALVDALVTGR 209
Query: 108 ISVICLANSETQLK----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
+ A+ + L+ +A+ + L + +
Sbjct: 210 NQIFISASKKQALQFRAYIVAYAKRVADVELKGETITLPNGAQLIFLGTNSKTAQSYHGN 269
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL--TERNAN 221
+ + R + + Y + + +S T L A
Sbjct: 270 LYFDEIFWVNRFEEIRKVAAGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAE 329
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ I S+ +G + I G + E + D
Sbjct: 330 QVEIDISHANLKNG---KKCGDGQWRQIV-NIYDAEAGGCNLFDIEQLKLENSPDE--FE 383
Query: 282 VEVCGQFPQQDIDSF----------IPLNIIEE--ALNREPCPDPYAPLIMGCDIAEEGG 329
+F + F + + + + P + +G D + G
Sbjct: 384 QLFMCEFIDDNQSVFKFTMMQRCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGD 443
Query: 330 DNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
+ +VV+ + + D +I + KY + ID G
Sbjct: 444 RSALVVIAPPKVDGGKFRLLEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTTGLGVGV 503
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS----GLIQNL 439
+ ++ + ++++ +K D + S + +
Sbjct: 504 YEIVKKERPDAVALTYNVE---------LKSKMVLKGLDIISKGRFEFDSMHAVEVGASF 554
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
++K I + ++ + R + A D + + F P
Sbjct: 555 MAIKKQITNSGRQVTYVADRSEEASHADLAWACLQVFINEP 595
>gi|84393331|ref|ZP_00992091.1| putative phage gene [Vibrio splendidus 12B01]
gi|84376047|gb|EAP92935.1| putative phage gene [Vibrio splendidus 12B01]
Length = 590
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/424 (11%), Positives = 109/424 (25%), Gaps = 40/424 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK-----TTLWAEVSKWLSLLP 136
I R IG T + L + A S Q + + + L
Sbjct: 167 ILKSRQIGATYYFSGEALEDAILTGDNQIFLSA-SRAQAEVFRSYIIAIGKEFLDIELSG 225
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
N + + + Y + + + + H +
Sbjct: 226 NPITLSNGAELRFLSTNSKTAQSYHGHVYVDEYFWIPNFDELNKLASAMATHKKWRKTYF 285
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
+ +S + +R + +F + D R+ +
Sbjct: 286 STPSSKMHQAYPFWTGDSWRKGKESREKLEFPT----FAEFRDGGRLCDDKQWRYVVTIE 341
Query: 257 TVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNI----IEEALNREPC 311
I S F + F ++ ++ A ++
Sbjct: 342 DAANGGCELF-DIDELREEYSQEDFNNLFMCMFVDGALSVFKFSDLEKGMVDAAHWQDFK 400
Query: 312 PDPYAP-----LIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKI 360
P P + +G D + + +VV+ + W + + ++I
Sbjct: 401 PKNKQPFARREVWLGYDPSRTRDNACLVVVAPPAVAGEKFRVLEKHYWKGLNFQYHVSEI 460
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNR-RTELHVK 419
+ ++Y+ I +D G D + R N + L +K
Sbjct: 461 DKVFQRYKVTYIGVDTTGIGGGVWDLISKK---------YPREAHAIHYSNENKNRLVMK 511
Query: 420 MADWLEFASLINHSG---LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
M D +E L + + ++K + + +++R + D + +
Sbjct: 512 MIDIVEAKRLQFDAEHKDIAMAFMAIKRVPTASGNAMTFKAERNQTTGHADAFWAISHAC 571
Query: 477 AENP 480
P
Sbjct: 572 INEP 575
>gi|109897022|ref|YP_660277.1| hypothetical protein Patl_0695 [Pseudoalteromonas atlantica T6c]
gi|109699303|gb|ABG39223.1| protein of unknown function DUF264 [Pseudoalteromonas atlantica
T6c]
Length = 577
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 53/446 (11%), Positives = 121/446 (27%), Gaps = 41/446 (9%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + + K R IG T AW L + A+
Sbjct: 135 EVFFDYQKRWHAHKDQRTRFILK-----SRQIGATYYFAWEALEDAILTGKNKIFLSASR 189
Query: 117 ETQ----LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+A + L + ++ + + + M
Sbjct: 190 SQVMVFRAYICAFARKYFEVELKGSPIILSNEAQLHFLSTNSRTAQSYNGDLYVDEVFWM 249
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ + H + +I+ +S + + + + + +
Sbjct: 250 NDFNNIWHVAKGMASHKHWTRTLISTPSSKSHEAYTMWSGDRYNQGRKDEDK----QELK 305
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
++ + D R + + + + D +F
Sbjct: 306 VNHATLYGGHLAKDRIWRDFVTVEDAANDGCTLFDIDELKDENTPDEFDNLYMCEFVDDS 365
Query: 293 IDSFIPLNIIEEALNREP---------CPDPYAPLIMGCDIAEEGGDNTVVVL------R 337
F ++++ A +R+ P + +G D A D T+ ++
Sbjct: 366 HSVFKLADLLKCATDRQHWKDYRERAPRPFLNRAVWLGYDPARSRDDATLAIVAPPVLPG 425
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
+ + DLR +I + +++ I ID G D ++ V
Sbjct: 426 EKFRVLERIYFKGKDLREQAVEIQKICKRFNVVHIGIDVTGIGWGVFDLVKAFYPRVQGF 485
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELA 454
+T+L +KM D + + + Q S+K F V + G+++
Sbjct: 486 HYSPE---------IKTKLVLKMMDVIGEDRFEYDAGDKDIPQAFLSVKKF-VTSNGQIS 535
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENP 480
+ R + D + + + P
Sbjct: 536 YCAHRNADSGHGDVFFAISHAIHKEP 561
>gi|269941618|emb|CBI50024.1| phage protein [Staphylococcus aureus subsp. aureus TW20]
Length = 599
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 70/530 (13%), Positives = 144/530 (27%), Gaps = 128/530 (24%)
Query: 7 TNPETEQKLFDL-MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAH 65
T +EQ + ++ +W + + FVL F R +Q + + H
Sbjct: 27 TKSRSEQTMENIAVWISFYRENPHRFVLDF-----------MNINLRPFQCVLLWAMIHH 75
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
A RG+GKT L+A L PG +I A +++Q L
Sbjct: 76 QY------------FMFLASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGINVLE 123
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
++ LS L ++ + + + P + + + + +
Sbjct: 124 KIENELLSPLIHREIESINTGNQKPM----------IAFHNGSWIRV--------VASND 165
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
++ DE + + + + ++ + + +
Sbjct: 166 NARGHRANLLLVDEFVKVDEDLIDTVFKKMLTSQREPAFLHKAKYKNYP-REENTQMYLS 224
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIAR--------------------------------- 272
W + ++ +
Sbjct: 225 SAWMKSHWAYDSMRSFTKQMLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQAEG 284
Query: 273 --------------YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+G F ++ +F P ++ +A P +P
Sbjct: 285 FNKMKFAMEMEAVWWGETESAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKEKR 344
Query: 319 IMGCDIAE---EGGDNTVVVLRRG---------PVIEHLFDWSKTDLRTTNNKISGLVEK 366
++ D+A D +V L R + ++ D D +T +I L +
Sbjct: 345 LLAVDVARMGGNSNDASVFSLIRLLPKGKQQYERQLNYMEDMEGIDFQTQAIRIRQLYDD 404
Query: 367 YRPDAIIIDANNTGARTCDYLE------MLGYHVYRVLGQ--------------KRAVDL 406
+ D I++D N GA D L G + R + +
Sbjct: 405 FDCDYIVLDLKNVGAGILDNLRIPLTDIDRGVEYEPLNVSNDDDLASTCKYPEAPRVIHV 464
Query: 407 EFCRNRR-TELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAI 455
N R E+ +AD LI+ ++ + F +L
Sbjct: 465 INATNERNMEMANLLADNFMRGKFRL---LIREEQAEELFRQDK--KLKY 509
>gi|146311014|ref|YP_001176088.1| hypothetical protein Ent638_1356 [Enterobacter sp. 638]
gi|145317890|gb|ABP60037.1| protein of unknown function DUF264 [Enterobacter sp. 638]
Length = 254
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/242 (14%), Positives = 73/242 (30%), Gaps = 33/242 (13%)
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY--------- 315
+ + Y D + + +F F + ++ +
Sbjct: 13 DIDQLRMEYSPDE--YQNLLMCEFIDDLASVFPLSELQVCMVDSWEVWSDFHALALRPFG 70
Query: 316 -APLIMGCDIAE--EGGDNTVVVLR-------RGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ +G D A+ + GD+ V+ I W D R + I L +
Sbjct: 71 WREVWIGYDPAKGTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQ 130
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
+Y I ID+ G + ++ V + N + L +K D +
Sbjct: 131 QYNVTYIGIDSTGVGHGVYENVKAFFPAVREFVYNP---------NVKNALVLKAYDIIS 181
Query: 426 FASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPR 482
L + + Q+ +++ + E+ R + A D + M+ P +
Sbjct: 182 HRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQ 241
Query: 483 SD 484
+
Sbjct: 242 GE 243
>gi|57867562|ref|YP_189190.1| prophage, terminase, ATPase subunit [Staphylococcus epidermidis
RP62A]
gi|57638220|gb|AAW55008.1| prophage, terminase, ATPase subunit, putative [Staphylococcus
epidermidis RP62A phage SP-beta]
Length = 599
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 70/530 (13%), Positives = 144/530 (27%), Gaps = 128/530 (24%)
Query: 7 TNPETEQKLFDL-MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAH 65
T +EQ + ++ +W + + FVL F R +Q + + H
Sbjct: 27 TKSRSEQTMENIAVWISFYRENPHRFVLDF-----------MNINLRPFQCVLLWAMIHH 75
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
A RG+GKT L+A L PG +I A +++Q L
Sbjct: 76 QY------------FMFLASRGLGKTFLSAVYCLTRCILYPGTKIIITAPTKSQGINVLE 123
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
++ LS L ++ + + + P + + + + +
Sbjct: 124 KIENELLSPLIHREIESINTGNQKPM----------IAFHNGSWIRV--------VASND 165
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
++ DE + + + + ++ + + +
Sbjct: 166 NARGHRANLLLVDEFVKVDEDLIDTVFKKMLTSQREPAFLHKAKYKNYP-REENTQMYLS 224
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIAR--------------------------------- 272
W + ++ +
Sbjct: 225 SAWMKSHWAYDSMRSFTRQMLKKKSEDDLKSFVCHIPYYTGVMEKLYSHKQMKAEAQAEG 284
Query: 273 --------------YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+G F ++ +F P ++ +A P +P
Sbjct: 285 FNKMKFAMEMEAVWWGETESAFFNFNTIDFNRKLSQAFYPKEVLVQADINNPIKEPKEKR 344
Query: 319 IMGCDIAE---EGGDNTVVVLRRG---------PVIEHLFDWSKTDLRTTNNKISGLVEK 366
++ D+A D +V L R + ++ D D +T +I L +
Sbjct: 345 LLAVDVARMGGNSNDASVFSLIRLLPKGKQQYERQLNYMEDMEGIDFQTQAIRIRQLYDD 404
Query: 367 YRPDAIIIDANNTGARTCDYLE------MLGYHVYRVLGQ--------------KRAVDL 406
+ D I++D N GA D L G + R + +
Sbjct: 405 FDCDYIVLDLKNVGAGILDNLRIPLTDIDRGVEYEPLNVSNDDDLASTCKYPEAPRVIHV 464
Query: 407 EFCRNRR-TELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAI 455
N R E+ +AD LI+ ++ + F +L
Sbjct: 465 INATNERNMEMANLLADNFMRGKFRL---LIREEQAEELFRQDK--KLKY 509
>gi|170718356|ref|YP_001783582.1| hypothetical protein HSM_0231 [Haemophilus somnus 2336]
gi|168826485|gb|ACA31856.1| protein of unknown function DUF264 [Haemophilus somnus 2336]
Length = 595
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 47/443 (10%), Positives = 119/443 (26%), Gaps = 40/443 (9%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
F+ + + L + + + + R IG T A+ L + A+ +
Sbjct: 148 FLSSLFDYQLRAREQKALHKVRMILKS-RQIGATYYFAFEALEDAIKTGDNQIFLSASKK 206
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQ------SLSLHPAPWYSDVLHCSLGIDSKHYST 171
++K N + + S + ++
Sbjct: 207 QA--EIFKTYITKMARQYFNVELKGNPIILSNGAELHFLSTNKSTAQGYHGHVYGDEFAW 264
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + H + + +S + E + R I+ +
Sbjct: 265 LRNFKEFYTVASAMATHKKWRETYFSTPSSKLHESYAFWSGDMWKESDKKRRDIVFPSLE 324
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
++ + + D + + +Y + + +
Sbjct: 325 QMCNG-GVVCPDGAWRYVITIHDALKGGAGVLFDLDQLKQKYS--ALAFKQLFECHWIDD 381
Query: 292 DIDSFIPLNIIEEA--LNREPCPDPYAPL-------IMGCDIAEEGGDNTVVVL------ 336
+ F +++ A +N+ P P G D A + V++
Sbjct: 382 EDSIFTISKLLKCAVNINKWADFQPDTPRPFGDREVWGGYDPAHSSDGASFVIVAPPINE 441
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ + W R +I L ++Y I IDAN G + ++
Sbjct: 442 GEKFRVLARYQWFGLSYRWQAEQIKKLYQQYNFSYIGIDANGVGQGVFEMIQE------- 494
Query: 397 VLGQKRAVDLEFCR-NRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGE 452
+R ++ L +K+ D +E + + + +K + +
Sbjct: 495 --FARREARPILYSLETKSGLVLKVHDLVERGLIEWSEEEKDIAASFLMIKQTSTQSGAK 552
Query: 453 LAIESKRVKGAKSTDYSDGLMYT 475
+ + R + D + +
Sbjct: 553 ITFTADRTSQLQHADVFWAIAHA 575
>gi|123441220|ref|YP_001005207.1| terminase, ATPase subunit [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122088181|emb|CAL10969.1| terminase, ATPase subunit [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 725
Score = 100 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 50/429 (11%), Positives = 109/429 (25%), Gaps = 47/429 (10%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL----KTTLWAEVSKWLSLLPNKHW 140
R IG T A+ L A+ L +A + L +
Sbjct: 186 SRQIGATWYAAFEALEDAILTGNNQAFLSASRPQSLIFRRYIIKFAFELFGIELTGDPIV 245
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + ++ + H+ I+ +
Sbjct: 246 LSNGAELHFLSTNTNTAQGFCANVYIDEIFWQRGFTELKKVAGAIATHSHLRRTYISTPS 305
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW-KRFQIDTRTVE 259
+ T + R + P + + + + +E
Sbjct: 306 AKTHQAYPFWAGDEWRKGKKARENVDF--PTFAQMEAGIMCPDSHWRYITTVETAVADME 363
Query: 260 GIDPSF--------HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ E I S QF F + +E+ L
Sbjct: 364 EKAKVYGAAAILIDLEEIREENAESS--FNQLYMCQFVDTGDCVFR-FDQLEKCLTNVST 420
Query: 312 PDPY----------APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRT 355
+ + + G D A G + V++ + H+ W +
Sbjct: 421 WEDHDVNAMRPFGNREVWAGYDPARTGDTASFVLVAPPQVDGEPFRVLHIETWHGFAFKY 480
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG-YHVYRVLGQKRAVDLEFCRNRRT 414
+I + +Y I ID G C+ ++ V + + + +
Sbjct: 481 QVGRIKEYMARYNITHIGIDTTGIGGPVCEMVQDFARREVTPIRYSQESKNR-------- 532
Query: 415 ELHVKMADWLEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDG 471
L +KM D +E + I G+ + +++ + G + + R D
Sbjct: 533 -LVMKMIDVVEHKRIAWDIEDKGIAASFMAIRHTTTKSGGGMTFVADRSADTGHADRFFA 591
Query: 472 LMYTFAENP 480
+ + P
Sbjct: 592 IAHAVINEP 600
>gi|300922729|ref|ZP_07138820.1| hypothetical protein HMPREF9548_00965 [Escherichia coli MS 182-1]
gi|300420946|gb|EFK04257.1| hypothetical protein HMPREF9548_00965 [Escherichia coli MS 182-1]
Length = 181
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 18/180 (10%)
Query: 317 PLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
P+ +G D + G VVL I W D T I L EKY +
Sbjct: 1 PVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYNVE 60
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
I IDA G + A D+ + +T + +K D + L
Sbjct: 61 YIGIDATGLGVGVFQLVR---------SFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLE 111
Query: 431 NH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
+ + + +++ + + E+ R + A D + M+ P + +
Sbjct: 112 YDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWATMHALLNEPLTAGIST 171
>gi|332288320|ref|YP_004419172.1| terminase-like family protein [Gallibacterium anatis UMN179]
gi|330431216|gb|AEC16275.1| terminase-like family protein [Gallibacterium anatis UMN179]
Length = 590
Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 53/429 (12%), Positives = 106/429 (24%), Gaps = 36/429 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET--QLKTTL--WAEVSKWLSLLPN 137
I R IG T A L + A+ + Q ++ + +A + + L
Sbjct: 167 ILKSRQIGATYYFALEALIDALQTGRNQIFLSASKKQAMQFRSYICDFASKTAEVDLKGE 226
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
F Q+ + + + + + + + Y I+
Sbjct: 227 TIKFPNQAELIFLGTNSKTAQSYHGNLYFDEIFWVNKFDEMRKVASGMASQKQYRQTYIS 286
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
+S + +S + + D R +
Sbjct: 287 TPSSMSHSAYPFWSGQLF----NRGRPADQRQEFDISHAYLQPGRLMPDGQWRQIVTIYD 342
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----------IPLNIIEEALN 307
+ + + + QF + F L + +
Sbjct: 343 AMAQGCNLFDVDALKLEYSVEEFEQLFLCQFIDDNSSVFKFIDLQKCGVDSLEVWSDFNP 402
Query: 308 REPCPDPYAPLIMGCDIAEEGG------DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS 361
P P+ +G D A G V + H D I
Sbjct: 403 LAKRPFADNPVWIGYDPAHTGDRAALAVVAPPAVEGGKYRLLHYKTVHGMDFEQQAGLIK 462
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
++ Y I ID G + L + + + E+ +K
Sbjct: 463 DYLQIYNVQKITIDRTGLGEGVYQLVR---------KFYPLTRGLTYNVDLKNEMVLKTL 513
Query: 422 DWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + L S +I + ++K ++ S R K A D + +M+
Sbjct: 514 NIIGKRRLEFDSGDKEVINSFMTIKKQTTRTGQKITYISDRSKEASHGDIAWAIMHCLMN 573
Query: 479 NPPRSDMDF 487
S D
Sbjct: 574 ESYHSGADT 582
>gi|317490974|ref|ZP_07949410.1| terminase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920521|gb|EFV41844.1| terminase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 590
Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 55/445 (12%), Positives = 119/445 (26%), Gaps = 57/445 (12%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+W E + H ++ + K R IG T A+ +
Sbjct: 140 DTWADEHLFGYQKHLRLNIAQTVRNILK-----SRQIGATWYFAFEAFENAVLTGDPQIF 194
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS-----------LHPAPWYSDVLHC 160
A+ AEV + + + +F + + +
Sbjct: 195 LSASKAQ-------AEVFRSYIVNIAQQYFGIDLTGNPIRLSNGAELRFLSTNKNTAQSY 247
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
S + Y + + + H+ + + ++ T +
Sbjct: 248 SGHLYCDEYFWVPNFTHLNEVASAMATHDKWRTTYFSTPSAKTHQAYPFWTGEEWKRGSK 307
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDV 279
R + L E P W+ ++ G + + E + RY +
Sbjct: 308 KRAKVKFPEFDELRDGGREC---PDGQWRYIITMEDAIRGGFNLADIERLRNRYNDST-- 362
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNRE---------PCPDPYAPLIMGCDIAEEGGD 330
+ F F ++ ++R+ P + G D A G
Sbjct: 363 FAMLYMCVFVDSKDAVFSFEDLERCGVDRDIWQDFDIKLKRPFGDREVWAGYDPARSGDL 422
Query: 331 NTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+T VL + + +W R N+I L KY + ID G
Sbjct: 423 STFAVLAPPVLAVEKFRVLEIVNWHGMSFRWQANEIKKLFAKYNIRYLGIDVTGIGNAVF 482
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNR-RTELHVKMADWLEFASLI---NHSGLIQNLK 440
+ ++ R + + EL +K D + + +H+ + +
Sbjct: 483 ENIQ---------HFAGRVAVPIRYSVKTKDELILKALDVISSNRIEWPKDHTEIPASFL 533
Query: 441 SLKSFIVPNTGELAIESKRVKGAKS 465
+++ + + + R
Sbjct: 534 AIRRTTTNSGNSMTFVADRSADTGH 558
>gi|88858953|ref|ZP_01133594.1| Mu-like prophage FluMu protein gp28 [Pseudoalteromonas tunicata D2]
gi|88819179|gb|EAR28993.1| Mu-like prophage FluMu protein gp28 [Pseudoalteromonas tunicata D2]
Length = 593
Score = 99 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 53/456 (11%), Positives = 117/456 (25%), Gaps = 57/456 (12%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + H + N+ + K R IG T A+ + + A S
Sbjct: 147 KLLYPHQKHWFENQNHRARFILK-----PRQIGATFYFAFEAFYDAVVNGRNKIFISA-S 200
Query: 117 ETQLKTTLWAEVSKWLSL----------LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
Q A + + + + S +
Sbjct: 201 RDQA-EVFKANIVALCREHFNIELTGSPMVLNLAGGKTVKLIFKSTNARTAQSESGDLYI 259
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER---NANRF 223
+ + + H + + + + + + + + N F
Sbjct: 260 DEVFWIPNYKTLRGLAQAMATHKHLRITYFSTPSVTSHEAYDHWNGKWYRKTKACNDPEF 319
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
I S+ +G+F + + G D + Y D
Sbjct: 320 AIDVSHKSLKNGRF---CEDGIWRQML-TVHDVVNSGFDRIDISVLENEYSTDE--FNNL 373
Query: 284 VCGQFPQQDIDSF----------IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
+F +F + L P P+++G D A G +V
Sbjct: 374 FMCKFIDDAHSAFNLKQIMDCVGDSTKWTDFNLE-WERPFALRPVVIGFDPARFGDKASV 432
Query: 334 VVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
VL + D S D ++I L +KY I +D G + +
Sbjct: 433 AVLSAPMKPGEKFRLLEAIDLSGNDFEAMASEIKLLTDKYNVQHIGVDTTGIGYGVWEMI 492
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQNLKSLKS 444
+ + + +L +K + ++ + + +++
Sbjct: 493 TKFYPNAEPIHYNPI---------IKNQLVIKAINVIKNRRFEFDQDAVNIASSFINIRR 543
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+V ++ + R D + +M+ P
Sbjct: 544 KVV--GDQITYATNRTATTGHADIAWAIMHAMKFEP 577
>gi|262276634|ref|ZP_06054439.1| P-loop protein [alpha proteobacterium HIMB114]
gi|262225214|gb|EEY75661.1| P-loop protein [alpha proteobacterium HIMB114]
Length = 409
Score = 99.2 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/343 (14%), Positives = 103/343 (30%), Gaps = 38/343 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR GKT L +L + ++ + K +W ++ K + L +
Sbjct: 22 TGRRFGKTHLCLVEILRQARHCDNGKIFYVSPTYRMSKEIMWKQIKKLVKELRWDKYINE 81
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L++ L + + ++ DE +
Sbjct: 82 TELTIVLVNNCQISLKGADK-------------------SADNLRGVGLNFLVLDEFADI 122
Query: 204 PDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL---DDWKRFQIDTRTVE 259
P+ + ++++ AN + P+ Y++F + +WK ++ T
Sbjct: 123 PEEAWTEVLRPTISDKYANGKVLFVGTPKGYGNWSYDMFQRGQAGDPEWKSWKYTTIEGG 182
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
++P E LD+ R E F + + + D A +
Sbjct: 183 QVEPHEIEQAKKD--LDARSFRQEYEASFETYAGVVYYNFD--RAKNVKPVPYDQNAVIH 238
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII----- 374
+G D + + +++G I + F T I + +Y P +I+
Sbjct: 239 IGMDFNIDPMSACLFYVKQG--ISYFFKEIVIYSSNTQEMIDEITRQYDPKRVIVYPDPA 296
Query: 375 ----DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ G L+ G++V D N R
Sbjct: 297 SRQRKTSAGGKTDLMLLQNAGFNVKAKPTHALVRDRINSVNSR 339
>gi|322420465|ref|YP_004199688.1| hypothetical protein GM18_2968 [Geobacter sp. M18]
gi|320126852|gb|ADW14412.1| hypothetical protein GM18_2968 [Geobacter sp. M18]
Length = 507
Score = 99.2 bits (245), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/340 (14%), Positives = 84/340 (24%), Gaps = 49/340 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GR +GK+ + + L T G + A + L T + E+ L P
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTII-EEIEFQLDTNP--DLMNSI 111
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+L+ + P + L + R + + + DE +
Sbjct: 112 ALTKYGKPNIHRKPYFRLEFTNGSVLYF-RPAGAYG----DAFRSLHVGRVWVDEGAWLT 166
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
+ + L + S P L Y D + F+ +
Sbjct: 167 ERAWKALRQCLKAGGT---LRIYSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIIA-RYGLDSDVTRVEVCGQFPQQ-------------------------DIDSFIP 298
++ G DS + EV G+ +
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRD 282
Query: 299 LNIIEEALNREPCPDPYAPL----IMGCDIAEEGG-------DNTVVVLRRGPVIEHLFD 347
+ E A +R P +G D+ T + R +
Sbjct: 283 CDTEEAAHDRLEMLLNLTPRSGQFWVGGDLGYTNDPTEIVVFQETEIGERTLLKMILRVH 342
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
I+ L Y P I +D G L
Sbjct: 343 LEHVSYPHIAQIIALLERYYTPAGIGVDNGGNGLAVVQEL 382
>gi|253689017|ref|YP_003018207.1| hypothetical protein PC1_2641 [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251755595|gb|ACT13671.1| protein of unknown function DUF264 [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 570
Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/470 (12%), Positives = 124/470 (26%), Gaps = 52/470 (11%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+E + H AI R IG + A L G + I L+ S
Sbjct: 121 VLESLYEHQKRWYKKRKQRNR--AILKSRQIGASWYFAREALLDAL-ETGTNQIFLSASR 177
Query: 118 TQLKTTLWAEVSKWLSLLPNKHW-------FEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
Q + + L+ + + + + +
Sbjct: 178 AQAYQ--FKRFIQLLASSIGVELKGGDAIVLSNGATLYFLGTSAATAQSYTGNLYFDEFF 235
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ + + + + +S + F + +
Sbjct: 236 WVSNFLNLRKVAAGMATQKGLRRTYFSTPSSEEHEAYTFWTGDFFNKSRPKAERVEIDVT 295
Query: 231 RRLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ + + W++ I +G D I + D +F
Sbjct: 296 HK---VLKKGLLCGDNIWRQIVTIHDTLEQGFDLVDLNEIKSENSPDD--FENLYACRFV 350
Query: 290 QQDIDSFIPLNIIEEALNR-----EPCPDPY-------APLIMGCDIAE--EGGDNTVV- 334
+F +I ++ P PY P+ +G D + GD+ +
Sbjct: 351 SVGERAFDYTALINCGVDGYNDDVWPDWRPYTQRPLGNRPVWIGYDPSGDSGTGDSAGLS 410
Query: 335 ------VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V + + I L +Y I ID+ G+ +
Sbjct: 411 IVSPPAVPGGKFRVIEVRQLRGMTFEKQAEVIKELTHQYNVQFIGIDSTGNGSAVHQLV- 469
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSF 445
V AV ++ + + EL +K + + L ++ +++ F
Sbjct: 470 --------VKFFPAAVKYQYSPSVKRELVLKAQMLIRAGRFEYDAGMMELARSFMTVRKF 521
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
V G + S R KG+ D + M+ P S+ ++
Sbjct: 522 -VTQGGMTSYASDRTKGSSHGDIAWATMHALHNEPIGSESGGNDGFIQEF 570
>gi|307826152|ref|ZP_07656363.1| protein of unknown function DUF264 [Methylobacter tundripaludum
SV96]
gi|307732791|gb|EFO03657.1| protein of unknown function DUF264 [Methylobacter tundripaludum
SV96]
Length = 598
Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 52/461 (11%), Positives = 121/461 (26%), Gaps = 41/461 (8%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN- 115
+ + NNP + + + R IG T A+ L + A+
Sbjct: 155 KLFFAYQLVWWAAKNNPLLRRNRFILKS-RQIGATYYFAFEALADAILTGENQIFLSASR 213
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS----KHYST 171
+ ++ + K + + + S +
Sbjct: 214 DQAEVFKAYIIAFGLEHFGVELKGQGVITLSNGAELRFLSTNSRTAQSYHGHLYVDECFW 273
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + + + H + + + ++ + + + A+
Sbjct: 274 IPDFDKMWKVASGMAAHKKWRRTLFSTPSAISHQAYPMWCGEKYNQGKADDKKAEFDVSH 333
Query: 232 RLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ W+ + +G D + + Y D +F
Sbjct: 334 A---ALKDGLMGADKIWRHMVTVVDAEAQGCDLFDIDELQDEYSKDD--FANLFMCKFID 388
Query: 291 QDIDSFIPLNIIEEALNRE---------PCPDPYAPLIMGCDIAEEGGDNTVVVL----- 336
F L I+ RE P P P+ +G D + + ++ +L
Sbjct: 389 DAKSVF-NLGIMMTCYAREDYTDYNDKAPRPYGNRPVAIGYDPSRTRDNASLAILAIPLR 447
Query: 337 -RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+ D+ + + N+I +V+ + + ID G + +E V
Sbjct: 448 PGDKWRVLKTMDFHGQNFQYQANRIKEIVDSHNVQHVGIDVTGIGYGLFELVEQFYRRVT 507
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN---HSGLIQNLKSLKSFIVPNTGE 452
+ +T L +K D +E + + Q + + +G
Sbjct: 508 PINYSNET---------KTGLVMKAIDVIENGRFEYESGNKRITQAFMMI-TKTTTGSGL 557
Query: 453 LAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
+ + R D + +M+ P S
Sbjct: 558 ITYSAGRNNATGHADVAWSIMHALNYEPIAVRKKTTVTMSD 598
>gi|149909656|ref|ZP_01898309.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
PE36]
gi|149807360|gb|EDM67313.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
PE36]
Length = 601
Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/466 (12%), Positives = 123/466 (26%), Gaps = 46/466 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPE---VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
E ++ + + L E I R IG T A+ + +
Sbjct: 146 KEMLDELKDNLLYPHQLHWFEHQDYRSRFILKPRQIGATFYFAFEAFYDAVVNGRNKIFI 205
Query: 113 LANSETQLKTTLWAEVSKWLS----LLPNKHWFEMQSLSLHPAPWYSD----VLHCSLGI 164
A S Q + ++ L + S S +
Sbjct: 206 SA-SRDQAEIFKANIIALCREQFGIELSGSPLTMRNKGKTTTLYFKSTNARTAQSASGDL 264
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
+ + + H + + + + + + +L + + A
Sbjct: 265 YIDEVFWIPKFKELRSLAQAMATHKDFRITYFSTPSVTSHEAYDLWNGRWYRKTKACNDP 324
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ R + K + + + K D +G D + Y +
Sbjct: 325 EFAIDVSRKTLKHGLLCDDGIWRQKLNVYDVVE-QGFDRIDISMLENEYSKEE--FDNLF 381
Query: 285 CGQFPQQDIDSFIPLNIIEEALN----------REPCPDPYAPLIMGCDIAEEGGDNTVV 334
+F +F L + + P P+++G D A +VV
Sbjct: 382 MCKFIDDAHSAF-SLKQLMACVGNSKKWTDFDPTWSRPYAMKPVVIGFDPARTRDIASVV 440
Query: 335 VL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
VL + + S D T ++I L KY I +D G + ++
Sbjct: 441 VLSLPLGPDDKFRLLESLNLSGNDFETMASEIKELTLKYHVVHIGVDTTGMGLGVFELIQ 500
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSF 445
+ + + +K + + G + + +++
Sbjct: 501 KFFPLAMPIHYNPHNKNK---------MVIKALNVIGKKRFEFDEGSVMVASSFINIRKK 551
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCP 491
+V +++ + R D + +M+ P D R
Sbjct: 552 VV--GDQISYATNRTAATGHADIAWAIMHAMIYEPLSGDSSSTRTS 595
>gi|319896520|ref|YP_004134713.1| phage terminase atpase subunit protein [Haemophilus influenzae
F3031]
gi|317432022|emb|CBY80370.1| Probable phage terminase ATPase subunit protein [Haemophilus
influenzae F3031]
Length = 556
Score = 98.8 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/408 (11%), Positives = 104/408 (25%), Gaps = 41/408 (10%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ H + ++ + K R IG T ++ L + A S+
Sbjct: 163 LFDYQKHIRANKHHDVRNILK-----SRQIGATYYFSFEALEDAIFSGDNQIFLSA-SKR 216
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQ------SLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
Q + K + + + S + Y+ +
Sbjct: 217 QA-EIFKNYIVKMAREYFGVELTGNPIILSNGAELHFLSTNKNTSQGNSGHVYGDEYAWI 275
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ + H + + +S + + + + R +
Sbjct: 276 RDFQRFNDVASAMATHEKWRETYFSTPSSKFHESYSFWSGDNWRDGDPKRKNVSFPTFAE 335
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
L + + D E + RY +
Sbjct: 336 LRDG-GRLCPDGQWRYVVTIEDALKGGAGTLFNIEKLKQRYSKY--AFNQLYMCVWIDDA 392
Query: 293 IDSFIPLNI----IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVLR------ 337
F + ++ + ++ P P + G D A G + V++
Sbjct: 393 DSIFTVHQLLKCGVDISKWKDFNPKADRPFGDREVWGGFDPAHSGDGASFVIIAPPALPS 452
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
+ + W N+I L EKY I IDA G + ++
Sbjct: 453 EKYRVLARYQWQGLSYVYQANQIRALYEKYNMTYIGIDATGVGYGVYELVKE-------- 504
Query: 398 LGQKRAVDLEFC-RNRRTELHVKMADWLEFASLINHSGLIQNLKSLKS 444
+RA +T + +K+ D +E + + L + +
Sbjct: 505 -FARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSEKELDILSTNQQ 551
>gi|116751218|ref|YP_847905.1| hypothetical protein Sfum_3801 [Syntrophobacter fumaroxidans MPOB]
gi|116700282|gb|ABK19470.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
Length = 507
Score = 98.4 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/340 (14%), Positives = 84/340 (24%), Gaps = 49/340 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GR +GK+ + + L T G + A + L T + E+ L P
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTII-EEIEFQLDSNP--DLMNSI 111
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+L+ + P + L + R + + + DE +
Sbjct: 112 ALTKYGKPKIHRKPYFRLEFTNGSVLYF-RPAGAYG----DAFRSLHVGRVWVDEGAWLT 166
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
+ + L + S P L Y D + F+ +
Sbjct: 167 ERAWKALRQCLKAGGT---LRIYSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIIA-RYGLDSDVTRVEVCGQFPQQ-------------------------DIDSFIP 298
++ G DS + EV G+ +
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRD 282
Query: 299 LNIIEEALNREPCPDPYAPL----IMGCDIAEEGG-------DNTVVVLRRGPVIEHLFD 347
+ E A +R P +G D+ T + R +
Sbjct: 283 CDTEEAAHDRLEMLLNLTPRSGQFWVGGDLGYTNDPTEIVVFQETEIGERTLLKMILRVH 342
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
I+ L Y P I +D G L
Sbjct: 343 LEHVSYPHIAQIIALLERYYTPAGIGVDNGGNGLAVVQEL 382
>gi|213029404|ref|ZP_03343851.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 282
Score = 98.1 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/291 (14%), Positives = 82/291 (28%), Gaps = 20/291 (6%)
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
C A Q++ + V L + ++ +
Sbjct: 1 ANKYSLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH--------RFRILNNKIINR 49
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ + + E + G + +EA + + + + +
Sbjct: 50 VTGSEFVFYGLWRNIEEIKSLEGI-----DVLWLEEAHALTEYQWKILEPTIRKEGSE-C 103
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
W + + + P +D +I+ + + + I A D +
Sbjct: 104 WFIFNPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSDTMLKVIDAARRRDPEGFVHV 163
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMGCDIAEEGGDNTVVVLRRGPV 341
G D + I L+ IE A++ D P +G D+A+ G D V R G V
Sbjct: 164 YEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIGFDVADSGADKCANVYRYGSV 223
Query: 342 IEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTGARTCDYLEMLG 391
I +W + + R I+ D+ GA +
Sbjct: 224 IYWADEWKAKEDELLKSCQRTYQAAMERDADIVYDSIGVGASAGAKFSEIN 274
>gi|298346517|ref|YP_003719204.1| phage terminase protein [Mobiluncus curtisii ATCC 43063]
gi|298236578|gb|ADI67710.1| phage terminase protein [Mobiluncus curtisii ATCC 43063]
Length = 470
Score = 98.1 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/389 (14%), Positives = 102/389 (26%), Gaps = 45/389 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + V ++ R GKTTL L+ + PG V
Sbjct: 31 MPWQ-KLVADVAGERQAEHP-ERARYQTVVVTVPRQSGKTTLIKALMAAVAQANPGCQVY 88
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A + W E++K L K + ++
Sbjct: 89 YTAQTRKDAVEK-WGELAKQLR----KDMGIAPDGKPRVKVLEGTGNERIVFRGTESMIM 143
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF-----LTERNANRFWIM 226
G H ++ DEA ++ LT ++ + I
Sbjct: 144 PFAPT-------VEGIHGKTSPLVVVDEAWAFDQARGDDLMAAFNPVGLTIPHSQVWIIS 196
Query: 227 TSNPRRLSG----KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA----------- 271
T+ R + E + + A
Sbjct: 197 TAGDTRSEWLRSLVDKGRQAINDPGTTTAFFEWSADEEMAAANLRSDEALAFHPAIGFTQ 256
Query: 272 --------RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
+ R +P S + L E+ EP P + +G D
Sbjct: 257 ELWKIQSLAQTEPDHLYRRSYLNLWPTAAETSIVDLEAWEKLAEPEPASMPPD-VAIGFD 315
Query: 324 IAEEGGDNTVVVLRR-GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
+A T+ + G ++ SK I+ L E P A++ D +
Sbjct: 316 VATARTGATIYAAWQDGETVQIHRLVSKAGAAWVEKAIAHLQETLAPMAVVADDSGDNRP 375
Query: 383 TCDYLEMLGYHVYRVLGQKRAV-DLEFCR 410
+ L G +Y + ++ A + EF
Sbjct: 376 IIEALRRNGKEIYALRPREYASANSEFFA 404
>gi|163758712|ref|ZP_02165799.1| prophage MuMc02, terminase, ATPase subunit, putative [Hoeflea
phototrophica DFL-43]
gi|162284002|gb|EDQ34286.1| prophage MuMc02, terminase, ATPase subunit, putative [Hoeflea
phototrophica DFL-43]
Length = 460
Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 70/443 (15%), Positives = 122/443 (27%), Gaps = 55/443 (12%)
Query: 85 GRGIGKTTLNAWLVL----WLMSTRPGISVICLANSETQLKTTLWAEVS---KWLSLLPN 137
R GKT V+ + L+ E Q + + V K L
Sbjct: 28 ARQTGKTFTTTLEVVDDCFAAALASRRQRWVILSRGERQAREAMNEGVKLHAKAYDLAIE 87
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
H ++ Q D+ H S R +S H G
Sbjct: 88 AHEYDWQGQEGSYRAMEVDLPHGSKITALPANPDTARGFSANVFLDEFAFHKDSGAIW-- 145
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID-TR 256
+ ++ +TS P KFYE+ D W + ++D R
Sbjct: 146 -----------KALFPVISAG---WKLRITSTPNGKGNKFYELMTAEGDRWSKHEVDIYR 191
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP--LNIIEEALNREPCPDP 314
V P E + D D E ++ + ++ +E+ +P
Sbjct: 192 AVADGLPRDIEELREGLA-DEDAWAQEYELKWLDEASAWLSYELISSVEDERAGDPYLYQ 250
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRR-GPVIEHLFDWSKTDLRTTNNK---ISGLVEKYRPD 370
P +G DI D V+ + + + + T + ++E+YR
Sbjct: 251 GGPCYVGRDIGR-RNDLHVIWVWELVGDVLWERERIEQKRATFASMDAAFDDVMERYRVV 309
Query: 371 AIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
ID G + + + G + VL + + + E +
Sbjct: 310 RACIDQTGMGEKVVEDAQTRHGSRIEGVLFTGPN---------KLVMATAGKEAFEDRRV 360
Query: 430 IN---HSGLIQNLKSLKSF-IVPNTGELAIESKRVKGAKSTDYSDGLMYT-FAENPPRSD 484
+ L +L L+ E + D + A + R+D
Sbjct: 361 RITMGDAKLRADLHKLRKVASATGAPRFVAE----RDDDHADRTWAAFLGIHAASEGRAD 416
Query: 485 MDF----GRCPSYQYEGVDLLIE 503
D+ PS Q D E
Sbjct: 417 YDYRPVTAATPSQQARRFDDPGE 439
>gi|103487487|ref|YP_617048.1| hypothetical protein Sala_2004 [Sphingopyxis alaskensis RB2256]
gi|98977564|gb|ABF53715.1| protein of unknown function DUF264 [Sphingopyxis alaskensis RB2256]
Length = 436
Score = 97.7 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 70/430 (16%), Positives = 122/430 (28%), Gaps = 44/430 (10%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + N P + + AGRG GKT A V T PG + +A
Sbjct: 28 AQLLTDWSWWRRADQNPPTGDWHVWLLLAGRGFGKTRTGAEWVRAFAETTPGARIALVAA 87
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
S + + + S L++ P+ H SL W +
Sbjct: 88 SLLEARQVMVEGESGLLAIAPD-HLRPEYESSLRRLTWPN-----------------GAV 129
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLS 234
+ A DE + P LT R A + T+ PR +
Sbjct: 130 ATLYSAVEPDSLRGPEHDAAWCDEIAKWPKGEAAWDNLMLTMRIGARPQVVATTTPRCVP 189
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
I + + + R + + + A YG + + R E+ G+ + D
Sbjct: 190 LVRRLIQERGVATTRGRTASNR--RNLSVQWLATMDAIYG-GTRLGRQELDGELLEDVED 246
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCD-IAEEGGDNTVVVL----RRGPVIEHLFDWS 349
+ +IE +A +++G D A GGD +V+ R G + +
Sbjct: 247 ALWTRALIERCRVDAGSIGKFARVVIGVDPPASAGGDACGIVVAALLRDGRLAVVEDASA 306
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGA-RTCDYLEMLGYHVYRVLGQKRAVDLEF 408
L + ++ +N G L + V
Sbjct: 307 LRPLPGVWAQAVAAAAARWGAERVVAESNMGGDMVAAVLRQADMTLPVVAIHASVGKA-- 364
Query: 409 CRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
RR E + + + L L L+ +S D
Sbjct: 365 ---RRAEPVALAYERGQVVHAGAFADLEDQLCGLQMGGGYAGP-----------GRSPDR 410
Query: 469 SDGLMYTFAE 478
+D ++ A
Sbjct: 411 ADACVWALAA 420
>gi|78356952|ref|YP_388401.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219357|gb|ABB38706.1| hypothetical protein Dde_1909 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 507
Score = 97.3 bits (240), Expect = 6e-18, Method: Composition-based stats.
Identities = 47/340 (13%), Positives = 84/340 (24%), Gaps = 49/340 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GR +GK+ + + L T G + A + L T + E+ L P
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTII-EEIEFQLDTNP--DLMNSI 111
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+L+ + P + L + R + + + DE +
Sbjct: 112 ALTKYGKPKIHRKPYFRLEFTNGSVLYF-RPAGAYG----DAFRSLHVGRVWVDEGAWLT 166
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
+ + L + S P L Y + + F+ +
Sbjct: 167 ERAWKALRQCLKAGGT---LRIYSTPNGLRDTTYYRLTS-SEQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIIA-RYGLDSDVTRVEVCGQFPQQ-------------------------DIDSFIP 298
++ G DS + EV G+ +
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRD 282
Query: 299 LNIIEEALNREPCPDPYAPL----IMGCDIAEEGG-------DNTVVVLRRGPVIEHLFD 347
+ E A +R P +G D+ T + R +
Sbjct: 283 CDTEEAAHDRLEMLLNLTPRSGQFWVGGDLGYTNDPTEIVVFQETEIGERTLLKMILRVH 342
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
I+ L Y P I +D G L
Sbjct: 343 LEHVSYPHIAQIIALLERYYTPAGIGVDNGGNGLAVVQEL 382
>gi|308188181|ref|YP_003932312.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1]
gi|308058691|gb|ADO10863.1| Terminase, ATPase subunit (GpP) [Pantoea vagans C9-1]
Length = 190
Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats.
Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 21/186 (11%)
Query: 317 PLIMGCDIAE--EGGDNTVVVLR-------RGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
+ +G D A+ + GD+ V+ I W D R + I L ++Y
Sbjct: 9 EVWIGYDPAKGTQNGDSAGCVVMAPPAVPGGKFRILERHQWRGMDFRAQADAIRTLTQQY 68
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA 427
I ID+ + G + ++ V + N + L +K D +
Sbjct: 69 NVTYIGIDSTSVGLGVYENVKAFFPQVKEFVYNP---------NVKNALVLKAYDTIASG 119
Query: 428 SLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
L + + Q+ S++ + E+ R + D + M+ A P +
Sbjct: 120 RLEFDASRLDIAQSFMSIRKATTASGNRPTYETSRSEEVSHGDLAWATMHALANEPLQGQ 179
Query: 485 MDFGRC 490
+
Sbjct: 180 AAHTQN 185
>gi|315426011|dbj|BAJ47659.1| prophage MuMc02, terminase, ATPase subunit [Candidatus
Caldiarchaeum subterraneum]
Length = 439
Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats.
Identities = 70/432 (16%), Positives = 132/432 (30%), Gaps = 35/432 (8%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ H +P F+ + RG G T A T P +++ ++ S Q
Sbjct: 18 DIRLHPWQKRFIDDPSRFRIILKH-RGAGATFTIAAEACAEALTHPASTILLISYSLRQS 76
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+ V LS L NK S++ LG S+ S
Sbjct: 77 LEI-FRHVRTILSRLENKRLKH--GHSIYRLAAKIGARTVELGNGSRIISL--------- 124
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
P+ A+ DEA+ NL T N + S P+ G F+E
Sbjct: 125 PNNPESLRGYRADAVYVDEAAFFRGDTNLKTAIMFTTVARNGRVTLVSTPKGKRGWFHEA 184
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
+ + W + + I E + R E+ +F + ++FIP
Sbjct: 185 WT-TDNTWSKHLVKLGDSPHITMHDLEELRKTMS--PLEWRQEMMCEFLDEV-NAFIPYE 240
Query: 301 IIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVVL---RRGPVIEHLFDWSKTDLRTT 356
I E + P + +G D ++ + + ++ + +
Sbjct: 241 KILECVEDYVPARVVGGRVYVGVDFGRFRDSTVIIAVVEDGERFRVCYVEELRQKPFAAQ 300
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
I+ P + +D+ GA + L H+ + + + L
Sbjct: 301 LEAINRANMVLHPAIVAVDSTGMGAPLAETLAKTIPHLQPIT--ITSSTKQT-------L 351
Query: 417 HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGE-LAIESKRVKGAKSTDYSDGLMYT 475
+ + + LI + + L+ + NTG + E+ + DY L
Sbjct: 352 VNNLRNNILNKKLIIPADEKTLINQLRLYQEINTGHSIKYEAPA---GEHDDYVMALALA 408
Query: 476 -FAENPPRSDMD 486
+A ++
Sbjct: 409 CYAAQTTQAQKT 420
>gi|149911893|ref|ZP_01900493.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
PE36]
gi|149805043|gb|EDM65069.1| putative bacteriophage terminase, ATPase subunit [Moritella sp.
PE36]
Length = 601
Score = 96.9 bits (239), Expect = 7e-18, Method: Composition-based stats.
Identities = 55/466 (11%), Positives = 122/466 (26%), Gaps = 46/466 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPE---VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
E ++ + + L E I R IG T A+ + +
Sbjct: 146 KEMLDELKDNLLYPHQLHWFEHQDYRSRFILKPRQIGATFYFAFEAFYDAVVNGRNKIFI 205
Query: 113 LANSETQLKTTLWAEVSKWLS----LLPNKHWFEMQSLSLHPAPWYSD----VLHCSLGI 164
A S Q + ++ L + S S +
Sbjct: 206 SA-SRDQAEIFKANIIALCREQFGIELSGSPLTMRNKGKTTTLYFKSTNARTAQSASGDL 264
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
+ + + H + + + + + + +L + + A
Sbjct: 265 YIDEVFWIPKFKELRSLAQAMATHKDFRITYFSTPSVTSHEAYDLWNGRWYRKTKACNDP 324
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ + K + + + K D +G D + Y +
Sbjct: 325 EFAIDVSHKTLKHGLLCDDGIWRQKLNVYDVVE-QGFDRIDISMLENEYSKEE--FDNLF 381
Query: 285 CGQFPQQDIDSFIPLNIIEEALN----------REPCPDPYAPLIMGCDIAEEGGDNTVV 334
+F +F L + + P P+++G D A +VV
Sbjct: 382 MCKFIDDAHSAF-SLKQLMACVGNSKKWTDFDPTWSRPYAMKPVVIGFDPARTRDIASVV 440
Query: 335 VL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
VL + + S D T ++I L KY I +D G + ++
Sbjct: 441 VLSLPLGPDDKFRLLESLNLSGNDFETMASEIKELTLKYHVVHIGVDTTGMGLGVFELIQ 500
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSF 445
+ + + +K + + G + + +++
Sbjct: 501 KFFPLAMPIHYNPHNKNK---------MVIKALNVIGKKRFEFDEGSVMVASSFINIRKK 551
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCP 491
+V +++ + R D + +M+ P D R
Sbjct: 552 VV--GDQISYATNRTAATGHADIAWAIMHAMIYEPLSGDSSSTRTS 595
>gi|302343251|ref|YP_003807780.1| hypothetical protein Deba_1821 [Desulfarculus baarsii DSM 2075]
gi|301639864|gb|ADK85186.1| conserved hypothetical protein [Desulfarculus baarsii DSM 2075]
Length = 507
Score = 96.5 bits (238), Expect = 9e-18, Method: Composition-based stats.
Identities = 48/340 (14%), Positives = 85/340 (25%), Gaps = 49/340 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GR +GK+ + + L T G + A + L T + E+ L P
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTII-EEIEFQLDTNP--DLMNSI 111
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+L+ + P + L + R + + + DE +
Sbjct: 112 ALTKYGKPKIHRKPYFRLEFTNGSVLYF-RPAGAYG----DAFRSLHVGRVWVDEGAWLT 166
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
+ + L + S P L Y D + F+ +
Sbjct: 167 ERAWKALRQCLKAGGT---LRIYSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIIA-RYGLDSDVTRVEVCGQFPQQDIDSF-------------------------IP 298
++ G DS + EV G+ + +F
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSEMRD 282
Query: 299 LNIIEEALNREPCPDPYAPL----IMGCDIAEEGG-------DNTVVVLRRGPVIEHLFD 347
+ E A +R P +G D+ + R +
Sbjct: 283 CDTEEAAHDRLEMLLNLTPRSGQFWVGGDLGYTNDPTEIVVFQEMEIGERTLLKMILRVH 342
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
I+ L Y P I +D G L
Sbjct: 343 LEHVSYPHIAQIIALLERYYTPAGIGVDNGGNGLAVVQEL 382
>gi|324006782|gb|EGB76001.1| hypothetical protein HMPREF9532_03541 [Escherichia coli MS 57-2]
Length = 570
Score = 96.5 bits (238), Expect = 9e-18, Method: Composition-based stats.
Identities = 56/516 (10%), Positives = 127/516 (24%), Gaps = 48/516 (9%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKG-TPLEGFSAPRSWQLEFM-- 59
R + + +T + ++ F +K TP F+ + QL +
Sbjct: 63 RLVEKDDKTPKDFKEIDLLARQLDRFERHERRDQEKEKKAKTPKNHFTEEQITQLRALVF 122
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET- 118
+ + H + + + R IG T A L + A+
Sbjct: 123 DSLYEH-QKRWFKQWNRRNRFILKS-RQIGATWYFAREALLRALETGNNQIFLSASRAQA 180
Query: 119 -QLKTTLWAEVSKWLSLLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRT 175
Q K + + L E+ + ++ + + + +
Sbjct: 181 FQFKRFIQKLAREIGVELKGGDAIELSNGAILYFLGTSAATAQSYTGDLYLDEAFWISNF 240
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+ + +S + + + S
Sbjct: 241 IKLRSVAAGMATQKGLRRTYFSTPSSEEHEAYPFWTGDQFNKNRRRSDRVDI----DTSY 296
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
K + D+ R + + + R D F + +
Sbjct: 297 KALKNGKLCGDNIWRQIVTLEDAVKLGFDLVDTDEIRNENSPDEYANLYGCMFVKAGERA 356
Query: 296 FIPLNIIEEALNR-----EPCPDP-------YAPLIMGCDIAEEGG--DNTVVVL----- 336
F I+ ++ P +P P+ + D G D+ +V+
Sbjct: 357 FDYNAILGCGVDGYMPDAWPDWNPFAPRPLGNRPVWVSYDPNGSSGKGDSAGLVVLAPPA 416
Query: 337 --RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
+ N I + +Y I ID G +
Sbjct: 417 VPGGKFRAVERHQLRGMEYEEQANFIKEITTRYNVQHIAIDGTGIGDAVYQLVIKFFPQA 476
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
+ + + +KM + + L Q+ +++ G
Sbjct: 477 VKYNYSPV---------LKRSMVLKMLMVIRAGRFEFDAGMMDLAQSFMTVRKV--TAGG 525
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
+ +S R +G+ D + M P +++
Sbjct: 526 VITYQSDRARGSNHGDLAWATMQGIYNEPIGAEVTG 561
>gi|300088757|ref|YP_003759279.1| hypothetical protein Dehly_1680 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528490|gb|ADJ26958.1| conserved hypothetical protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 507
Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/340 (13%), Positives = 83/340 (24%), Gaps = 49/340 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GR +GK+ + + L T G + A + L T + E+ L P
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLIAAPHQGHLDTII-EEIEFQLDSNP--DLMNSI 111
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+L+ + P + L + R + + + DE +
Sbjct: 112 ALTKYGKPKIHRKPYFRLEFTNGSVLYF-RPAGAYG----DAFRSLHVGRVWVDEGAWLT 166
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
+ + L + S P L Y + + F+ +
Sbjct: 167 ERAWKALRQCLKAGGT---LRIYSTPNGLRDTTYYRLTS-SEQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIIA-RYGLDSDVTRVEVCGQFPQQ-------------------------DIDSFIP 298
++ G DS + EV G+ +
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRD 282
Query: 299 LNIIEEALNREPCPDPYAPL----IMGCDIAEEGG-------DNTVVVLRRGPVIEHLFD 347
+ E A +R P +G D+ + R +
Sbjct: 283 CDTEEAAHDRLEMLLNLTPRSGQFWVGGDLGYTNDPTEIVVFQEMEIGERTLLKMILRVH 342
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
I+ L Y P I +D G L
Sbjct: 343 LEHVSYPHIAQIIALLERYYTPAGIGVDNGGNGLAVVQEL 382
>gi|308389159|gb|ADO31479.1| Terminase, ATPase subunit [Neisseria meningitidis alpha710]
Length = 610
Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 69/466 (14%), Positives = 119/466 (25%), Gaps = 43/466 (9%)
Query: 42 GTPLEGFSAPRSWQL--EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
P + + AP Q E + I R IG T A
Sbjct: 148 EKPPKNYIAPEQQQRMIEIFNEQCFDYQKYWGEAYRQRRFRNILKSRQIGATFYFAREA- 206
Query: 100 WLMSTRPGISVICLANSETQL---KTTLWAEVSKWLSLLPNKHWFEMQSLSL--HPAPWY 154
+L S + GI+ I L+ S Q + + L + + +
Sbjct: 207 FLNSLKTGINSIFLSASRAQAYQFRQYILNLCRMVDVELKGGDVISLHNGAELHFLGTNS 266
Query: 155 SDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214
+ + Y + + + + +S
Sbjct: 267 RTAQGRNGNLYVDEYFWIPDFERLQTLAEPMASQKHLKTTYFSTPSSEGHPAYGFWSGAM 326
Query: 215 LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
E + I + D + QI T I
Sbjct: 327 FNEGRPPKEHIKL-----DLSHAALKRGRLDADAQWRQIVTIHDAQEAGCDLFDIDYLRQ 381
Query: 275 LDS-DVTRVEVCGQFPQQDIDSF----------IPLNIIEEALNREPCPDPYAPLIMGCD 323
+S D QF F + R P P+ +G D
Sbjct: 382 RNSPDKFAQLFECQFMPDGEGVFGFAQLQACGEESWDWAWYKPER-ARPAGNLPVWVGYD 440
Query: 324 IAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+ + +VV I TD + I + E+Y I+IDAN
Sbjct: 441 PSYTADASGLVVAVPPQNNGEPFYILETALIPGTDFESQAANIRKITERYNVSKIVIDAN 500
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---G 434
GA D + V + + + + +K + L+ + +
Sbjct: 501 GIGAAVFDLVRKFYPPVIGMTYTP---------DIKGMMVLKTQNLLKNKRIKWDAGNID 551
Query: 435 LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
L S++ + + + ES R K A D + M F + P
Sbjct: 552 LQMAFLSVRRSVTASGRNITYESVRSKTASHGDLAWAAMMLFYQEP 597
>gi|306818204|ref|ZP_07451935.1| possible phage terminase protein [Mobiluncus mulieris ATCC 35239]
gi|304649168|gb|EFM46462.1| possible phage terminase protein [Mobiluncus mulieris ATCC 35239]
Length = 470
Score = 96.1 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/388 (14%), Positives = 96/388 (24%), Gaps = 45/388 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + V + + ++ R GKTTL L+ + PG V
Sbjct: 32 MPWQ-KLVAEVACERQAANP-ERARYQRVIVTVPRQSGKTTLIKALMAAVAQANPGCKVY 89
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A + W E++K L K + ++
Sbjct: 90 YTAQTRKDAVEK-WGELAKQLR----KEMGTGPDGKPRVKVLEGTGNEKIVFQGTESVIQ 144
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF-----LTERNANRFWIM 226
G H I DEA ++ LT ++ + I
Sbjct: 145 PFAPT-------PGGLHGATSPLAIVDEAWAFDQAQGDDLMAALNPVGLTIPHSQVWIIS 197
Query: 227 TSNPRRLSG----KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE--------------- 267
T+ R + E +
Sbjct: 198 TAGDTRSQWLKSLVDDGRAATSDPGATTAFFEWSADEETADADLRGDAALSFHPALGYTQ 257
Query: 268 --GIIARYGLDS--DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
+ G D + R +P S I L + L E P + D
Sbjct: 258 ELWKLKALGKDEKDHLYRRAYLNLWPTNAQTSIIDLETWD-GLATEISETPTGA-TIAFD 315
Query: 324 IAEEGGDNTVVVLRRGPVIEHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
+A+ T+ + L SK I L + P A++ D +
Sbjct: 316 VADGRTGATIYAAWQQDNSVCLHRLISKAGAAWIEKAIEHLQDTLAPAALVADDSGDNRP 375
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCR 410
+ L G +Y + ++ A
Sbjct: 376 IIEGLRRAGATIYALKPKEYATANSEFL 403
>gi|239502629|ref|ZP_04661939.1| hypothetical protein AbauAB_09982 [Acinetobacter baumannii AB900]
Length = 414
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 62/410 (15%), Positives = 115/410 (28%), Gaps = 54/410 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ AGR GKT+L + ++ S +P + +A + K +W ++ + +
Sbjct: 26 VVAGRRWGKTSL-SRTLIISKSRKPRQRIWYVAPTYRMAKQIMWKDLIEAI--------- 75
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
P W + H SL I+ + D ++ DE
Sbjct: 76 --------PRKWVVKINHSSLSIE----LVNGTLIELKGADDPDSLRGVGIDFLVLDEFQ 123
Query: 202 GTPDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD----DWKRFQIDTR 256
+ + L + +I T Y P W+ +Q T
Sbjct: 124 DISEEAWTQCLRPTLASTGGHAIFIGTPKAYNQLYTVYMQGQDPKKVKAGQWQSWQFPTI 183
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
T I S E A S + E F + P + + + DP
Sbjct: 184 TSPFIPESEIEAARADMDEKS--FKQEFLASFETMSGRVYYPFD--RKEHVGKYPFDPKL 239
Query: 317 PLIMGCDIAEEGGDNTVVVLRRGP---VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
P+ +G D +TV++ + + ++ +I +Y +I
Sbjct: 240 PIWIGMDF-NIDPMSTVIMQPQPNGEVWVVDEIVQFGSNTEEICEEIERKYWRYMKQIVI 298
Query: 374 I-DANNT------GARTCDYLEMLGY-HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
D G D + G+ + D NR +
Sbjct: 299 FPDPAGGQRQHARGESDLDIMREKGFKKILYRRKHPAIADRVNAVNR------MLRTADG 352
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+L + S + I G + G + +D + Y
Sbjct: 353 TVALRVDEKCKHLINSFEQTIYKPGGRDV---DKSGGVEH--SADAIGYA 397
>gi|331648285|ref|ZP_08349374.1| conserved hypothetical protein [Escherichia coli M605]
gi|331042834|gb|EGI14975.1| conserved hypothetical protein [Escherichia coli M605]
Length = 219
Score = 95.7 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/205 (16%), Positives = 68/205 (33%), Gaps = 49/205 (23%)
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNT 379
D+A+EG D R G ++E++ +WS +D+ + K+ G E+ + D +
Sbjct: 1 MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDNLEEFRFDEDGL 60
Query: 380 GARTCDYLEMLGY---------------------------HVYRVLGQKRAVDLEFCRNR 412
GA + V GQ ++ +F N
Sbjct: 61 GAGVRGDARAINELRNVARRPSILATPFRGSGAVFDPDDEAVRGDNGQAARLNKDFFANA 120
Query: 413 RTELHVKMADWLE-------FASLINHSGLIQ------------NLKSLKSFIVPNTGEL 453
+ + ++ + N +I S ++ + G++
Sbjct: 121 KAQSWWRLRKLFQNTWRAVAEGMAYNPDEIISISSSMALKDKLIIELSQPTYSINGVGKI 180
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAE 478
I K+ G +S + +D +M +A
Sbjct: 181 VI-DKQPDGTRSPNLADSVMINYAP 204
>gi|329849103|ref|ZP_08264131.1| phage terminase, large subunit, PBSX family [Asticcacaulis
biprosthecum C19]
gi|328844166|gb|EGF93735.1| phage terminase, large subunit, PBSX family [Asticcacaulis
biprosthecum C19]
Length = 430
Score = 95.4 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 61/440 (13%), Positives = 129/440 (29%), Gaps = 44/440 (10%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+E + A+ + F+ A GRG K+ A ++ PG V+ + +
Sbjct: 24 ILEPIPAYRFLTKKPLGSFRFR-AAYGGRGAAKSWEFANAAIYHSLNTPGARVVFVREIQ 82
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
L + + V L + + +++ +
Sbjct: 83 GSLADSAFTLVRNRLE-------------AYGLEGAFRQANGRFHHVENGAEILFLGLWR 129
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF-LTERNANRFWIMTSN-PRRLSG 235
+P+ I +EAS ++ L + + + P
Sbjct: 130 GNKPEGIKSL--EGATLTIWEEASEGRQRSLDVLIPTVLRTPQSELWCLWNPMLPTDPVD 187
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+F+ +P +++ + + E + D G + ++
Sbjct: 188 RFFRGDVEPQK-TICRRVNWDSNPHFPEALREQMALDRKKDPLRAAWIWDGAYMPSAQNA 246
Query: 296 FIPLNIIEEA--LNREPCPDPYAPLIMGCDIAEEGGDNTVVVL-----RRGPVIEHLFDW 348
+++ A R+ + +++G D A GGD +V+ G ++
Sbjct: 247 LWTRELLDRAWVQGRDKVMEAVGRVVVGVDPAGGGGDEVGIVVAGRYGAEGYIVLDDRSV 306
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
+ ++ V+ Y D ++++ N G L + G H R V
Sbjct: 307 AARSPEGWATEVLRAVDAYAADCVVVEKNFGGDLVASNLRVNGVHCRI-----REVTASR 361
Query: 409 CRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
+ R E + + + L L + G KS D
Sbjct: 362 GKQVRAEPIAALYEQHKVYHRRPFPALEGQLLQ-----MTPNGYAVK-------GKSPDR 409
Query: 469 SDGLMYTFAENPPRSDMDFG 488
D L++ E R + FG
Sbjct: 410 LDALVWALTE-LSRRSLAFG 428
>gi|328912284|gb|AEB63880.1| SPBc2 prophage-derived uncharacterized protein yonF [Bacillus
amyloliquefaciens LL3]
Length = 589
Score = 95.4 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/434 (12%), Positives = 118/434 (27%), Gaps = 90/434 (20%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
A RG GKT L + PG ++ + ++ Q + + ++ PN
Sbjct: 84 ASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVI-EKIDDLRKESPN------ 136
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L + + + + + + G + +I DE
Sbjct: 137 --LRREIEDLKTSTNDAKVEFHNGSWIKI--------VASNDGARSKRANLLIVDEFRMV 186
Query: 204 P-DVINLGILGFLTERNANRFWI----MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
++I+ + FLT + ++ R + K + RF +
Sbjct: 187 DFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSFNRFITYYNAM 246
Query: 259 -------------------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+D +A D +E+ + + ++
Sbjct: 247 MKGSKYFVCGLPYQIAIKEGLLDKDQVRDEMAEEDFDPIGWSMEMEALWFGESEKAYFKF 306
Query: 300 NIIEEAL----------------NREPCPDPYAPLIMGC------DIAEEGGDNTVVVL- 336
IE+ + + P + +A + D +V +
Sbjct: 307 EDIEKNRKLASPLFPPDYYSLIKDSNFKYESKKPGEIRLVSNDIAGMAGKDNDASVYTVF 366
Query: 337 -------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-- 387
I ++ T +I + E Y D I++D + G D L
Sbjct: 367 RLIPNSNGYDRHIVYMESIVGGHTGTQATRIRQIYEDYDCDYIVLDTQSIGLGVYDALCQ 426
Query: 388 ------EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKS 441
Y + + +R + +N E + S+ ++ L +
Sbjct: 427 PLYDKERAKEYEPFSCINDERMAERCTYQN--AEKVIY--------SIKGNAQLNSEIAV 476
Query: 442 LKSFIVPNTGELAI 455
L G++ I
Sbjct: 477 LLKDGF-KRGKIKI 489
>gi|242241227|ref|YP_002989408.1| hypothetical protein Dd703_3833 [Dickeya dadantii Ech703]
gi|242133284|gb|ACS87586.1| protein of unknown function DUF264 [Dickeya dadantii Ech703]
Length = 575
Score = 95.4 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/466 (12%), Positives = 113/466 (24%), Gaps = 52/466 (11%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VIC 112
++ + H N + + + + R IG T A L P I
Sbjct: 123 ILDSLAWH-QNGWYAQQDQRNRMILKS-RQIGATWYFAREALLRALRDDVAYPYQRHQIF 180
Query: 113 LANSETQLKT-----TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
L+ S Q AE +K + + + +
Sbjct: 181 LSASRRQAHQFRGFIQKVAEEVDVELKGGDKIVLSNGAELHFLGTSAATAQSYTGNLYFD 240
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + + + + + +S T + E+ + +
Sbjct: 241 EFFWVSNFANLRKVAGAMATLKGLTRTYFSTPSSETHEAYPFWTGARWNEKRSKAQKVAF 300
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVC 285
+S K D R + + V G + E I D
Sbjct: 301 ----DVSWKALNSGLLCPDKTWRQIVTLQDVIDHGWQYTDLEEIRDENSPDE--YNNLYG 354
Query: 286 GQFPQQDIDSF-----IPLNIIEEALNREPCPDPYAPL-----IMGCDI--AEEGGDNTV 333
+F + +F + P P+ +G D + GD+
Sbjct: 355 CEFVRDGESAFNLNLLFSCGADGYDEWPDWKPFASRPMADRGIWIGYDANGSSGNGDSGA 414
Query: 334 VVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
+ + + I L KY I ID G
Sbjct: 415 ISVVVPPLVAGGKFRTIETQQIRGLEFEEQAKVIEALTFKYNVQHIAIDGTGIGEAVYQI 474
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLK 443
++ L + +R L +KM + LI +++
Sbjct: 475 VKKFFPAAVCFLMSVSS--------KRA-LVLKMLQVIRAGRWEYDRSEQALINAFNAVR 525
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
G + ++ R +G+ D + M P + G
Sbjct: 526 RVK-TPGGIMTYDTDRARGSNHGDLAWATMLAVINEPLGQEQGGGG 570
>gi|78355964|ref|YP_387413.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78218369|gb|ABB37718.1| hypothetical protein Dde_0917 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 507
Score = 95.4 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/340 (13%), Positives = 83/340 (24%), Gaps = 49/340 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GR +GK+ + + L T G + A + L T + E+ L P
Sbjct: 55 GRDVGKSIVLSTDALHYAFTTRGGQGLVAAPHQGHLDTII-EEIEFQLDTNP--DLMNSI 111
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+L+ + P + L + R + + + DE +
Sbjct: 112 ALTKYGKPKIHRKPYFRLEFTNGSVLYF-RPAGAYG----DAFRSLHVGRVWVDEGAWLT 166
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
+ + L + S P L Y + + F+ +
Sbjct: 167 ERAWKALRQCLKAGGT---LRIYSTPNGLRDTTYYRLTS-SEQFHVFRWPSWLNPLWTED 222
Query: 265 FHEGIIA-RYGLDSDVTRVEVCGQFPQQ-------------------------DIDSFIP 298
++ G DS + EV G+ +
Sbjct: 223 REAELLEFYGGRDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRD 282
Query: 299 LNIIEEALNREPCPDPYAPL----IMGCDIAEEGG-------DNTVVVLRRGPVIEHLFD 347
+ E A +R P +G D+ V R +
Sbjct: 283 CDTEEAAHDRLEMLLNLTPRSGQFWVGGDLGYTNDPTEIVVFQEMEVGERTLLKMILRVH 342
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
I+ L Y P I +D G L
Sbjct: 343 LEHVSYPHIAQIIALLERYYTPAGIGVDNGGNGLAVVQEL 382
>gi|9630181|ref|NP_046608.1| hypothetical protein SPBc2p056 [Bacillus phage SPBc2]
gi|16079170|ref|NP_389994.1| prophage terminase, ATP subunit; phage SPbeta [Bacillus subtilis
subsp. subtilis str. 168]
gi|221310018|ref|ZP_03591865.1| hypothetical protein Bsubs1_11626 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314340|ref|ZP_03596145.1| hypothetical protein BsubsN3_11547 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319262|ref|ZP_03600556.1| hypothetical protein BsubsJ_11473 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323538|ref|ZP_03604832.1| hypothetical protein BsubsS_11602 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|81342066|sp|O31952|YONF_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized protein yonF
gi|2634531|emb|CAB14029.1| putative prophage terminase, ATP subunit; phage SPbeta [Bacillus
subtilis subsp. subtilis str. 168]
gi|3025534|gb|AAC13029.1| unknown [Bacillus phage SPbeta]
Length = 589
Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/434 (12%), Positives = 117/434 (26%), Gaps = 90/434 (20%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
A RG GKT L + PG ++ + ++ Q + + ++ PN
Sbjct: 84 ASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVI-EKIDDLRKESPN------ 136
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L + + + + + + G + +I DE
Sbjct: 137 --LRREIEDLKTSTNDAKVEFHNGSWIKI--------VASNDGARSKRANLLIVDEFRMV 186
Query: 204 P-DVINLGILGFLTERNANRFWI----MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
++I+ + FLT + ++ R + K + RF +
Sbjct: 187 DFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSFNRFITYYNAM 246
Query: 259 -------------------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+D +A D +E+ + + ++
Sbjct: 247 MKGSKYFVCGLPYQIAIKEGLLDKDQVRDEMAEEDFDPIGWSMEMEALWFGESEKAYFKF 306
Query: 300 NIIEEAL----------------NREPCPDPYAPLIMGC------DIAEEGGDNTVVVL- 336
IE+ + + P + +A + D +V +
Sbjct: 307 EDIEKNRKLASPLFPPDYYSLIKDSNFKYEGKKPGEIRLVSNDIAGMAGKDNDASVYTVF 366
Query: 337 -------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-- 387
I ++ T +I + E Y D I++D + G D L
Sbjct: 367 RLIPNSNGYDRHIVYMESIVGGHTGTQATRIRQIYEDYDCDYIVLDTQSIGLGVYDALCQ 426
Query: 388 ------EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKS 441
Y + + +R +N E + S+ ++ L +
Sbjct: 427 PLYDKERAKEYEPFSCINDERMAARCTYQN--AEKVIY--------SIKGNAQLNSEIAV 476
Query: 442 LKSFIVPNTGELAI 455
L G++ I
Sbjct: 477 LLKDGF-KRGKIKI 489
>gi|289661923|ref|ZP_06483504.1| phage-related terminase [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 267
Score = 95.0 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/269 (13%), Positives = 75/269 (27%), Gaps = 31/269 (11%)
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ D R ++ + + R D + +F S PL +
Sbjct: 3 RRCQDRAWRQIVNILDAQRRGCDLFDIDELREEYSPDAFANLLMCEFVDD-GASIFPLAM 61
Query: 302 IEEALNREP------------CPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIE 343
++ + P + +G D AE G +VVL +
Sbjct: 62 LQPCMVDSWVEWGQDYKPFAARPYGDRAVWIGYDPAETGDTAGLVVLAPPQQPGGKFRLL 121
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
+ D +I + +Y I ID G+ ++ ++
Sbjct: 122 ERIQFRGMDFAKQAAEIERITRRYWVTYIGIDTTGMGSGVAQLVKQFFPNLVTFSYSPE- 180
Query: 404 VDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRV 460
+T L +K D + L + + Q+L +++ + + + + R
Sbjct: 181 --------VKTRLVLKAFDVIHNERLEFDAGWTDVAQSLMAIRKTMTASGRQSTFTAGRS 232
Query: 461 KGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
+ D + L + P
Sbjct: 233 EETGHADLAWALFHALQNEPLEGRTARNS 261
>gi|218296139|ref|ZP_03496908.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
gi|218243516|gb|EED10045.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
Length = 426
Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 66/378 (17%), Positives = 115/378 (30%), Gaps = 37/378 (9%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GR GKTTL L + R G +V A + L + E+ + +
Sbjct: 30 RCGRRWGKTTLLLRLAAQAAAER-GQAVGWFAPIYSLLAPA-YEELLRRTRPGVVRAAER 87
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
Q + + + + I DEA+
Sbjct: 88 PQPVIRYVSGGRIEFWSLDSKDVPG--------------------RGRAYDLAIIDEAAF 127
Query: 203 TPD---VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
P V IL L +R + + T R + + + W F +
Sbjct: 128 APSLARVWEEAILPTLLDRLGSAWIASTPKGRNAFYELWNL-TLDDPAWAHFHEPSHRNP 186
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL--NREPCPDPYAP 317
+ + A + R E+ ++ + F + +E AL P P
Sbjct: 187 FLSQEELARMAATMTRER--YRQEILAEWVDAEGRVF-SEDALEAALLLQGPEDPRPGER 243
Query: 318 LIMGCDIAEEGGDNTVVVLRRGPVIE--HLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
G D+A V VLR G +E + W T K++ L+ +Y +D
Sbjct: 244 YAAGVDLARSQDYTAVAVLRLGAQLELVRVERWRGLSYTLTARKVAALLARY-EAYAHVD 302
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS--LINHS 433
A G + + V + D + L ++ LE L H
Sbjct: 303 ATGVGDAAWEGIRAEWPRVRPIRITGGRDDGRE-TRSKENLVGRLQSALETQELLLYPHP 361
Query: 434 GLIQNLKSLKSFIVPNTG 451
L+ L++ ++ +P+ G
Sbjct: 362 ELLAELRAFEARPLPSGG 379
>gi|85716479|ref|ZP_01047450.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter
sp. Nb-311A]
gi|85696668|gb|EAQ34555.1| prophage MuMc02, terminase, ATPase subunit, putative [Nitrobacter
sp. Nb-311A]
Length = 250
Score = 94.6 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/262 (19%), Positives = 78/262 (29%), Gaps = 38/262 (14%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ E + + + R GKTT+ A + L G V
Sbjct: 24 PDPWQAELLR--------------LNPKRALLLCSRQSGKTTVTALMALHRAIYETGALV 69
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ ++ S Q L ++ K L E+ ++ + +L K
Sbjct: 70 VIVSPSNRQSGEML-RQIKKLHGSLKGAP--ELVGDAVLKVELANGSRIIALPGTEKTIR 126
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ +I DEAS D + + L R A+ I + P
Sbjct: 127 GIA-----------------GVSLVIIDEASRVDDELLAAVRPMLATR-ADGSLIALTTP 168
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
G FYE ++ W R ++ I F + G E F
Sbjct: 169 AGKRGFFYEAWHSDDQTWHRVRVAASDCPRISKEFLADELRSLG--PARYSEEYELAFVD 226
Query: 291 QDIDSFIPLNIIEEALNREPCP 312
+F P +IE A E P
Sbjct: 227 DAASAF-PTAVIERAFTTEVEP 247
>gi|330015975|ref|ZP_08308363.1| putative ATPase subunit of terminase [Klebsiella sp. MS 92-3]
gi|328529845|gb|EGF56736.1| putative ATPase subunit of terminase [Klebsiella sp. MS 92-3]
Length = 575
Score = 94.2 bits (232), Expect = 5e-17, Method: Composition-based stats.
Identities = 55/468 (11%), Positives = 115/468 (24%), Gaps = 54/468 (11%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP------GISV 110
+ ++ + H + I R IG T A L +
Sbjct: 122 KILDSLAWHQR--GWYEQRDQRNRMILKSRQIGATWYFAREALLGALRTDVKHDYQRNQI 179
Query: 111 ICLANSETQLKTTLW----AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
A+ + L+ + AE + + + + +
Sbjct: 180 FLSASRKQALQFRNFIRKAAEEVDVELKGGEQITLSNGAELHFLGTSAATAQSYTGHLRF 239
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ + + + + +S + + + +
Sbjct: 240 DEFFWTGNFINLRKVAGAMATLKGLTRTYFSTPSSESHEAYQFWTGDRWNAKRPKAQRVD 299
Query: 227 T--SNPRRLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
S + SG Y P W++ I G D + + I D
Sbjct: 300 FDVSWKKTHSGVLY-----PDKTWRQIVTIQDAINNGWDYTDIDEIRDENSPDE--FENL 352
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNR-----EPCPDPYAPL-----IMGCDI--AEEGGDN 331
+F + +F ++ + + P P+ +G D GD
Sbjct: 353 YMCEFVKDGESAFNLSQLLGCGADGYDDWPDWKPFASRPMGQREVWLGYDANGGSGNGDA 412
Query: 332 TVVVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+ + L + I E+Y I ID G
Sbjct: 413 GALSVTVPPLVAGGRFRTVELKQLRGLEFEQQAAVIKEAAERYNVTHIAIDGQGVGEAVW 472
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKS 441
++ + +R L +KM + GL++ +
Sbjct: 473 QIVKNWFPAAICYQMSLSS--------KRA-LVLKMLQVIRAGRWEYDRSEQGLVRAFNA 523
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
++ V G + E+ R +G D + M + P + G
Sbjct: 524 VRKV-VTPGGFITYETDRSRGVSHGDMAWATMLSIINEPLGQESGGGG 570
>gi|300775654|ref|ZP_07085515.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
gi|300505681|gb|EFK36818.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
Length = 475
Score = 93.8 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/413 (11%), Positives = 122/413 (29%), Gaps = 45/413 (10%)
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ A ++ P S +L+ + K + +
Sbjct: 58 KSWTGAAWLMLSALAYPDTKWFIGRESLKRLRESTLITFFKVAK-----------AYKIP 106
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209
+ + + + + + + + +E
Sbjct: 107 KNIFKYNGQDHYIQFTNGSRIDLLDLRYLPSDQLYERYGSLEYTGGWIEEGGEINFGAYD 166
Query: 210 GILGFL-----TERNANRFWIMTSNPRRLSGKFYEIFNKPLD----DWKRFQIDTRTVEG 260
+ + E +T NP++ Y K Q +
Sbjct: 167 TLKTRIGRHMNEEYGLKPKIFVTCNPKKNWMYSYFYKPMKEGLLKLKQKFIQAFVQENPF 226
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP--CPDPYAPL 318
I + E + + +D + E + + D+ L I + L+ +
Sbjct: 227 ITTDYIEQLES----TTDKAKRERLLKGNWEYDDNPYKLTIYDRILDLWKNDHIEKKGRK 282
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR--PDAIIIDA 376
+ D+A G D V + + + ++ + I + K++ I DA
Sbjct: 283 YITADVARFGSDLATVGVWEDWDLIEVHEFEISKTTEIQACIQAMRIKHKIPKHNCIADA 342
Query: 377 NNTGARTCDYLEMLGYHVYRVLGQKR---AVDLEFCRNRRTELHVKMADWL--------- 424
+ G D L+++G+ ++ + + +N +T+L V +A+ +
Sbjct: 343 DGVGGGVVDNLDIIGFVNNAKPFEENTGQSKNAPKYKNMQTQLLVYLAEKIINQNKMNIS 402
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNTGELAIESK---RVKGAKSTDYSDGLMY 474
S + + L +++ +P+ + + K + +S DY D ++
Sbjct: 403 ADISEKQKEYIKEELDTIER--IPDVDIVTLVDKTQIKQNIGRSPDYRDMILM 453
>gi|186896569|ref|YP_001873681.1| hypothetical protein YPTS_3269 [Yersinia pseudotuberculosis PB1/+]
gi|186699595|gb|ACC90224.1| protein of unknown function DUF264 [Yersinia pseudotuberculosis
PB1/+]
Length = 725
Score = 93.8 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 50/428 (11%), Positives = 110/428 (25%), Gaps = 45/428 (10%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL----KTTLWAEVSKWLSLLPNKHW 140
R IG T A+ L A+ L +A + L +
Sbjct: 186 SRQIGATWYAAFEALEDAILTGNNQAFLSASRPQSLIFRRYIIKFAFELFGIELTGDPIV 245
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + +R + H I+ +
Sbjct: 246 LSNGAELHFLSTNTNTAQGFCANVYIDEIFWQRGFSELKRVAGAIATHTHLRRTYISTPS 305
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
+ T + R + P + + + + T +
Sbjct: 306 AKTHQAYPFWTGDEWRKGKNTREKVDF--PTFAQMEAGIMCPDNHWRYIT-TVTTAVADM 362
Query: 261 IDPSFHEGIIARYGLDSD--------VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ + G A + QF F + +E+ L
Sbjct: 363 WEKAKVYGDAAILIDLEEIEEENSESAFNQLYMCQFVDSGDCVF-KFDQLEKCLTNVSTW 421
Query: 313 DPY----------APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTT 356
+ + + G D A G + V++ + H+ W +
Sbjct: 422 EDHDVNAMRPFGNREVWAGYDPARTGDTASFVLVAPPQVDGEPFRVLHIETWHGFAFKYQ 481
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG-YHVYRVLGQKRAVDLEFCRNRRTE 415
+I + +Y I ID G C+ ++ V ++ + + +
Sbjct: 482 VGRIKEYMTRYNITHIGIDTTGIGGPVCEMVQDFARREVTQIHYSQESKNR--------- 532
Query: 416 LHVKMADWLEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
L +KM D +E + I G+ + +++ + G + + R D +
Sbjct: 533 LVMKMIDVVEHKRIAWDIEDKGIAASFMAIRHTTTKSGGGMTFVADRSADTGHADRFFAI 592
Query: 473 MYTFAENP 480
+ P
Sbjct: 593 AHAVINEP 600
>gi|149190524|ref|ZP_01868794.1| terminase, ATPase subunit [Vibrio shilonii AK1]
gi|148835648|gb|EDL52615.1| terminase, ATPase subunit [Vibrio shilonii AK1]
Length = 584
Score = 93.4 bits (230), Expect = 7e-17, Method: Composition-based stats.
Identities = 52/459 (11%), Positives = 117/459 (25%), Gaps = 53/459 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
++ + N + + + + R IG + AW V
Sbjct: 135 DEYREKTFFGYQKEIHEHKQNDDINEIRFYLKS-RQIGLSFYFAWEAFEDAVLTGDNQVF 193
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL-------HPAPWYSDVLHCSLGI 164
A S+ Q + K+ L L L + S + +
Sbjct: 194 ISA-SKKQAY-IFKNYIRKFALELAGIDLKGKDDLELSNGANLTFCSTNVSSSQGFNGHM 251
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
+ R + + + + I+ ++ + ++ N
Sbjct: 252 YWDEVFWIPRFGALDNYAGGMSIQAQFRTTYISTPSTVAHEAYPKWSG----KKEDNIDL 307
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ G + +D +G D F+ + R +V +
Sbjct: 308 SHKALKGGALGPDHIFRQM-------ITVDDAIAKGGDKLFNMAKLKRKYPVKEVFDNLL 360
Query: 285 CGQFPQQDIDSFIPLNIIEEALNRE---------PCPDPYAPLIMGCDI-----AEEGGD 330
+F F ++ + E P +++G D E D
Sbjct: 361 RCKFLDDSTSFFALKALLACKTDTENWKDVDHNKARPVGNEEVLVGYDPRGGGTGEGSDD 420
Query: 331 NTVVV------LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+VV + I G+ EKY + +D G+
Sbjct: 421 AGLVVALKPKTKGGVFRAIEKVRLKGSSYEQQAETIRGITEKYNVVYLAMDTGGVGSAVA 480
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI---NHSGLIQNLKS 441
+ + + + + + K + + + + L+ +
Sbjct: 481 ELVRKFYPALVELNYSPE---------MKRMMAYKAREIINNGRFLFDDDWDDLVHSFLM 531
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
++ +G++ S R K D + M+ A P
Sbjct: 532 IRQQTTDRSGQVTFVSNRSKIGSHADLAWASMHFLAWEP 570
>gi|213425656|ref|ZP_03358406.1| hypothetical protein SentesTyphi_08397 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
Length = 195
Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 21/181 (11%)
Query: 316 APLIMGCDIAE--EGGDNTVVVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
+ +G D A+ + GD+ V+ I W D R + I L E+
Sbjct: 13 REVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQ 72
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF 426
Y I ID+ G + ++ V + N + L +K D +
Sbjct: 73 YNVTYIGIDSTGVGHGVYENVKAFFPAVREFVYNP---------NVKNALVLKAYDIISH 123
Query: 427 ASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRS 483
L + + Q+ +++ + E+ R + A D + M+ P +
Sbjct: 124 RRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQG 183
Query: 484 D 484
+
Sbjct: 184 E 184
>gi|332290535|ref|YP_004421387.1| conserved hypothetical protein, Terminase-like family
[Gallibacterium anatis UMN179]
gi|330433431|gb|AEC18490.1| conserved hypothetical protein, Terminase-like family
[Gallibacterium anatis UMN179]
Length = 597
Score = 93.4 bits (230), Expect = 8e-17, Method: Composition-based stats.
Identities = 54/444 (12%), Positives = 112/444 (25%), Gaps = 48/444 (10%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ C ++ + + K R +G T A+ L + A S+
Sbjct: 156 LFKYQLTCRDNKHRKVRNILK-----SRQVGMTYYFAFEALEDAILTGDNQIFLSA-SKR 209
Query: 119 QLKTTLWAEVSKW------LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
Q + K + L N + + S I Y+ +
Sbjct: 210 QA-EIFLTYIRKMALQFFEVELKGNPIVLSNGAELHFLSTNKSTAQGYHGHIYGDEYAWL 268
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS--NP 230
+ + H + + +S ++A R I
Sbjct: 269 RNFTEFYTVASAMATHKKWRETYFSTPSSTRHSAYQFWNGDDWRGKDAKRKNIPFPSIQE 328
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
R G+ + D + E + +Y ++
Sbjct: 329 MRDGGR---ECPDGQWRYVITIDDALAGGAGELFDLEALKRKYNK--AAFDQLFMCKWID 383
Query: 291 QDIDSFIPLNIIEEALN----REPCPDPYAP-----LIMGCDIAEEGGDNTVVVL----- 336
F +++ A + ++ PD P + G D A+ + VV+
Sbjct: 384 DADSIFNISQLLKCATDISKWQDFRPDSDRPLDNREVWCGYDPAKSYDGASFVVIAPPVL 443
Query: 337 -RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
I W +I + ++Y I ID + G + +
Sbjct: 444 PGEKYRILERHQWHGLSYSYQAEQIKQIYQRYNVSYIGIDTSGVGVGVYEMI-------- 495
Query: 396 RVLGQKRAVDLEFCR-NRRTELHVKMADWLEFASLIN---HSGLIQNLKSLKSFIVPNTG 451
L +R + L +K+ +E L S + +K +
Sbjct: 496 -TLFARRETVPIIYSVESKAALVLKVHHLIEKNMLEWSNQESDIPAAFLMIKQTTTKSGD 554
Query: 452 ELAIESKRVKGAKSTDYSDGLMYT 475
++R + D +
Sbjct: 555 RTTFVAERTSQNQHADVFWAIANA 578
>gi|329122644|ref|ZP_08251223.1| terminase [Haemophilus aegyptius ATCC 11116]
gi|327472658|gb|EGF18087.1| terminase [Haemophilus aegyptius ATCC 11116]
Length = 202
Score = 93.0 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 19/192 (9%)
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGL 363
P + +G D A G +V++ + H + D T ++I
Sbjct: 15 QRPFGNREVWLGYDPAFTGDRAALVIVAPPKVEGGDYRVLHKQTFHGMDYETQASRIKQF 74
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
+ Y I+ID G+ + LE+ + + E+ +K +
Sbjct: 75 CDDYNVTRIVIDKTGMGSGVYQEVR---------KFYPMVQGLEYNADLKNEMVLKTQNL 125
Query: 424 LEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
++ L S ++ + ++K + TG++ S R + A D S +M P
Sbjct: 126 IQKRRLKFDSGDNDIVSSFMTVKK-RITGTGKITYVSDRSEDASHGDLSWAIMNCILNVP 184
Query: 481 PRSDMDFGRCPS 492
D S
Sbjct: 185 YGLGGDVSSNKS 196
>gi|317153313|ref|YP_004121361.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
gi|316943564|gb|ADU62615.1| hypothetical protein Daes_1602 [Desulfovibrio aespoeensis Aspo-2]
Length = 507
Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/389 (13%), Positives = 97/389 (24%), Gaps = 65/389 (16%)
Query: 38 WGEKGTPLEGFSAPRSW--QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA 95
WG+ S W Q+E + + + ++ GR +GK+ + +
Sbjct: 20 WGQAYLYNRDGSGRDYWPHQVEDLRCLARNIIHLD--------------GRDVGKSIVLS 65
Query: 96 WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
L T G + A + L + + E+ L P +++ + P
Sbjct: 66 TDALHYAFTTRGGQGLIAAPHQGHLDSII-EEIEYQLDTNP--DLMNSIAVTKYGKPKIH 122
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
+ L + R + + + DE + + + L
Sbjct: 123 RKPYFRLEFTNGSVLYF-RPAGAYG----DSFRSLHVGRVWVDEGAWLTERAWKALRQCL 177
Query: 216 TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA-RYG 274
+ S P L Y D + F+ + ++ G
Sbjct: 178 KTGG---ILRIYSTPNGLRDTTYYRLTS-SDQFHVFRWPSWLNPLWTEDRESELLEFYGG 233
Query: 275 LDSDVTRVEVCGQFPQQ-------------------------DIDSFIPLNIIEEALNRE 309
DS + EV G+ + + E A +R
Sbjct: 234 RDSSGWQHEVAGEHGKPSYGAFNVEQFNLCRQDLLEYQKIVITDSELRDCDTEEAAHDRM 293
Query: 310 PCPDPYAPL----IMGCDIAEEGGDNTVVVL-------RRGPVIEHLFDWSKTDLRTTNN 358
P +G D+ ++V R +
Sbjct: 294 EMLLNLTPRSGQFWIGGDLGYTNDPTEIIVFQEMEVGERTLLKMILRVHLEHVSYPHIAQ 353
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYL 387
+ L Y P I +D G L
Sbjct: 354 IFALLERYYTPAGIGVDNGGNGLAVVQEL 382
>gi|331035425|gb|AEC52982.1| large terminase protein [Synechococcus phage S-CRM01]
Length = 567
Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/470 (11%), Positives = 125/470 (26%), Gaps = 86/470 (18%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ F+ ++ + F P ++Q + + +
Sbjct: 31 KCSQDPEYFLENYIKIISLDHGIIPFK-PYNFQRKLVNSFHDNRF------------TIC 77
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R GK+T ++ R I++ LAN + K
Sbjct: 78 KLPRQCGKSTTVTAYLIHQAIFRDNINIAILANKRETAYELM------------AKLQLS 125
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
++L S+ +++ T T S ++ DE +
Sbjct: 126 YENLPKWMQQGVLGWNKGSIELENGSRITASSTSSSA-------VRGFAYNIVMLDEFAF 178
Query: 203 TP----DVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
P D + ++ + + T K + K + + +
Sbjct: 179 VPTNVADDFFSSVYPTISSGKSTKVIIVSTPCGMNHFYKMWTDATKGRNSYNPIEAHWSE 238
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP-----------------LN 300
V G D F + IA L + E F P L+
Sbjct: 239 VPGRDEKFKQETIANTSL--SQWQQEFETDFIGSVGTLINPAKLKSLVYDEPLLSSGGLD 296
Query: 301 IIEE--ALNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRG----PVIEHLFDWSKTDL 353
+ E + ++ D++ D + ++ + + ++
Sbjct: 297 VYEHPIMKDENDENSRDHEYMITVDVSRGMKLDYSAFLVFDITQYPHRLVAKYRNNEIKP 356
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCD----YLEMLGYHVYRVLGQKRAVDLEFC 409
+ I + +KY I+ + N+ G + +E + + G+ V
Sbjct: 357 MLFPDVIVPVAKKYNNAWILCEVNDIGDQVASIIFYDMEYPNLLMTSMRGRAGQVLGHGF 416
Query: 410 RNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKR 459
+T+L +KMA + + + +ES +
Sbjct: 417 SGGKTQLGLKMAKA-------------------PKKLGSSNMKQMVESDK 447
>gi|86372240|gb|ABC95184.1| GP17-terminase [Stenotrophomonas phage Smp14]
Length = 536
Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 49/392 (12%), Positives = 108/392 (27%), Gaps = 57/392 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R +GKTT+ A ++LW + LAN Q + L + +
Sbjct: 88 PRQMGKTTVVAAILLWYAIFNEEYRIAILANKGDQSREIL------------ARLQLMYE 135
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
L S ++ + ++ + DE +
Sbjct: 136 ELPWFMQVGVSVWNKGNIKLGNRSEVFTA-------ATGGSSIRGKSVNLMYLDEFAFVE 188
Query: 205 D--VINLGILGFLTERNANRFWI-MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
+ +T + I T N L K + +++ +
Sbjct: 189 NDVDFYTSTYPVVTSGTKTKVIITSTPNGMNLFYKIWTDSTNGKNNYVHNEAFWHDHPKR 248
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC---------- 311
D ++ + + E +F Q D+ + +E+ ++
Sbjct: 249 DQAWKDEQLRNMSE--RQFEQEFLCKF-QGSSDTLLSPAKLEQLTYQDHIRELGGNRDFK 305
Query: 312 ----PDPYAPLIMGCDIAEE-GGDNTVVVLRRG----PVIEHLFDWSKTDLRTTNNKISG 362
P A ++ D++E G D +V+ + + + + +
Sbjct: 306 IYEDPIKDASYVVTVDVSEGIGKDYSVISVFDTTEAPFRQVAMLRSNIIAPLILADLANR 365
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEM----------LGYHVYRVLGQKRAVDLEFCRNR 412
+ Y +I++ N+ G L +G+ +
Sbjct: 366 IGHLYNQAVLIVECNSIGNTVVTALWEDYEYENLLMTKNKEAESKVGEGGKSQPGVRTTK 425
Query: 413 RTEL--HVKMADWLEFASLINHS-GLIQNLKS 441
+T+L ++ +E LI + L S
Sbjct: 426 KTKLIGCSQLKMLIESDQLIIQDFDTVAELNS 457
>gi|218296727|ref|ZP_03497433.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
gi|218242816|gb|EED09350.1| protein of unknown function DUF264 [Thermus aquaticus Y51MC23]
Length = 425
Score = 92.7 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 67/398 (16%), Positives = 124/398 (31%), Gaps = 42/398 (10%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GK+ G + + L+ E Q + AE +K K +
Sbjct: 25 SRQTGKSFALTLEAALHAVEHRGSTWVLLSAGERQSREL--AEKAKAHLDA-MKQVGTLM 81
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
L L S+ + + +
Sbjct: 82 ESRFFEGGESVTQLEIRLPNLSRLIFLPANPRTARGYT--------GNVVLDEFAFHQDS 133
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT-VEGIDP 263
+ I + +T R + + S P GKF+E++ K W R ++ V P
Sbjct: 134 EAIWAAMYPIITRR-PDLKIRVMSTPNGPRGKFWELWEKGGPAWSRHKVTIYDAVAQGLP 192
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL----- 318
E + A D + + E +F + +F+P ++I EA RE DP P
Sbjct: 193 VDPEELRAGLADD-FIWQQEYLCEFLSAEE-AFLPWSLILEAEARE---DPRGPWNPDQA 247
Query: 319 IMGCDIAEEGGDNTVVV---LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
+G D+ VV + + L + ++ L+ + R +D
Sbjct: 248 YLGVDVGRHRDLTVFVVLERVGDVYWVRLLETLHRAPFAQQEARLHALLPQVRRAC--LD 305
Query: 376 ANNTGARTCDYLEM-LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF--ASLINH 432
A G + GY V V + +L ++ + E +
Sbjct: 306 ATGLGEMLAENARRAFGYKVEPVKFTPE---------VKADLAQRLRLFFEDRRVRIPED 356
Query: 433 SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD 470
L ++L S++ IV +G + +++R + D
Sbjct: 357 RALREDLHSVRR-IVTPSGNVRYDAERSERG-HADRFW 392
>gi|218688708|ref|YP_002396920.1| terminase, ATPase subunit (GpP) [Escherichia coli ED1a]
gi|218426272|emb|CAR07097.1| Terminase, ATPase subunit (GpP) [Escherichia coli ED1a]
Length = 612
Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 54/476 (11%), Positives = 108/476 (22%), Gaps = 55/476 (11%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-----TRPGISV 110
+ + + H +N + I R IG T A L +
Sbjct: 156 EKILPSLAWHQREWYDNRHHRNR--MILKSRQIGATWYFAREALLDALRDDVSAGYQRNQ 213
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL-------HPAPWYSDVLHCSLG 163
I L+ S Q + + +L + + L + +
Sbjct: 214 IFLSASRRQAYQ--FKHFIQQAALEVDVELKGGDKIVLSNGAELHFLGTSAATAQSYTGH 271
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+ + + + + + + T +
Sbjct: 272 LKFDEFFWVSNFVELRKVAGAMATLEGLTRTYFSTPSGETHEAYQFWTGDRWNSEQPRSK 331
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD-SDVTRV 282
+ D QI T + + I + R
Sbjct: 332 RSEF-----DVSHAHLKGGVLFPDETWRQIVTIEDAVANGWRYTNIGVIRSENTESEFRN 386
Query: 283 EVCGQFPQQDIDSFIPLNIIEEA---LNREPCPDPYAPLIMGCDIAEEGGDNTV------ 333
+F + +F + + P P+A MG G D
Sbjct: 387 LYMCEFVRDGEAAFSLSALTGCGVDGYDEWPDWKPFAARPMGVREVWLGYDANGSSGKGD 446
Query: 334 ----------VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GAR 382
+V + I +KY I ID G
Sbjct: 447 CGALSVCVPPLVAGGRFRTVETVRVQGMEFEQQAALIEEYTQKYNVKHIGIDVTGGNGEG 506
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNL 439
++ + +R L +KM + LIQ
Sbjct: 507 VYQIVKKFFPMAVPYNFNIAS--------KRA-LVMKMLQVVRAGRWEYDRSERDLIQAF 557
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
S++ G + ++ R +G D + M P ++ + R + ++
Sbjct: 558 ASVRKIQ-TPGGYITYDTDRSRGVSHGDLAWATMLAVINEPIGAEREDNRGFAMEF 612
>gi|323968971|gb|EGB64290.1| terminase [Escherichia coli TA007]
Length = 583
Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 60/470 (12%), Positives = 125/470 (26%), Gaps = 64/470 (13%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS----TRPGIS- 109
Q ++++ + A + + I R IG T A L + +P
Sbjct: 131 QRKWLDAIGACERAGITDRM-------ILKSRQIGATWYFAQEALLMALRDDVAQPYQRN 183
Query: 110 VICLANSETQL---KTTLWAEVSKWLSLLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGI 164
I L+ S Q K+ + S+ L + + + + + +
Sbjct: 184 QIFLSASRRQALQFKSIIQKAASEVDVELKGGDKVILSNGAELHFLGTSAATAQAYTGNL 243
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
+ R + + + + +S T + +
Sbjct: 244 YFDEFFWTGRFAELRKVAAAMATLDGLRCTYFSTPSSETHEAYAYW-------NGDHWNE 296
Query: 225 IMTSNPRRLSGKFYEIFNKPL--DDWKRFQIDTRT---VEGIDPSFHEGIIARYGLDSDV 279
+ ++ R+ + + L D+ QI T +G + + I D
Sbjct: 297 GLRTHKRQHFDVSWNALHNGLICPDYIWRQIVTLEDVVSQGWTLTNIDKIRRNNTEDE-- 354
Query: 280 TRVEVCGQFPQQDIDSF---IPLNIIEEALNREPCPDP-------YAPLIMGCDIAEEGG 329
R +F ++ +F I + + + P P P+ +G D G
Sbjct: 355 FRNLYMCEFAREGESAFNLNILIGCGVDGYDEWPDWKPFAPRPMGNRPVWIGYDANGSSG 414
Query: 330 D---------NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT- 379
+ V + I +Y + I ID
Sbjct: 415 NGDSGAVVVVVPPAVPGGRFRTVETRRVQGLEFEAQAKVIEEFTFRYNVEHIGIDVTGGH 474
Query: 380 GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLI 436
G ++ + +RT L +KM + L+
Sbjct: 475 GDAVYQIVKRFFPAAIPYTFTLSS--------KRT-LVLKMLQLMRAGRWEYDRSERELV 525
Query: 437 QNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
+++ G + E+ R +G D + M P + D
Sbjct: 526 SAFNAVRKTK-TQAGFITYETDRARGVSHGDLAWATMLAVINEPVGGEHD 574
>gi|319761996|ref|YP_004125933.1| hypothetical protein Alide_1284 [Alicycliphilus denitrificans BC]
gi|317116557|gb|ADU99045.1| hypothetical protein Alide_1284 [Alicycliphilus denitrificans BC]
Length = 633
Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/444 (11%), Positives = 109/444 (24%), Gaps = 44/444 (9%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET----QLKTTLWAEVSKWLSLLP 136
AI R IG T A L + A+ + + + L
Sbjct: 208 AILKSRQIGATWYFAREALIDALETGRNQIFLSASKAQAHLFKQYIVAFVHEVTGVELKG 267
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ + + + + + H +
Sbjct: 268 DPIVLANGATLYFLGSNARTAQGYHGNFYFDEFFWTQDFELLNKVASGMAMHKKWRKTYF 327
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
+ +S L + + RLSG F I
Sbjct: 328 STPSSIQHAAYAFWSGLRLKR---KSKIEVDISHDRLSGGFTGEDRVWR---NIVTILDA 381
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY- 315
G D + + Y + F F PL++++ +
Sbjct: 382 LAGGCDLFDLDELRLEYSD--AEFANLLMCGFVDDSFSVF-PLSMLQACMVDSWELWADF 438
Query: 316 ----------APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNK 359
P+ +G D + G +VVL + H + D
Sbjct: 439 KPFSQRPFGWMPVWVGYDPSHTGDSAGLVVLAPPAKPGGQLRVLHTQQFKGMDFEAQAKA 498
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
I + ++Y A+ +D G ++ + +T L +K
Sbjct: 499 IKEITQRYNVAAMTLDTTGIGQGVFQLVQKFYPAARGINYSVET---------KTMLVLK 549
Query: 420 MADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
+ L + L + ++K + + + + R + +D + M
Sbjct: 550 AQQVINAGRLEFDAGNKELASSFMAIKRELTASGRSVTYAAGRSEETGHSDLAWACMNAI 609
Query: 477 AENPPRSDMDFGRCPSYQYEGVDL 500
+ P ++ G +++
Sbjct: 610 SNEP--LEVGTGLATVQGQSFLEI 631
>gi|238021357|ref|ZP_04601783.1| hypothetical protein GCWU000324_01256 [Kingella oralis ATCC 51147]
gi|237868337|gb|EEP69343.1| hypothetical protein GCWU000324_01256 [Kingella oralis ATCC 51147]
Length = 619
Score = 91.9 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/432 (11%), Positives = 108/432 (25%), Gaps = 43/432 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R IG T A L V A +Q + ++ + L+ + +
Sbjct: 199 SRQIGATFFFAREALVDAVKTGKNKVFLSA---SQAQAFIFKNYMRKLAGMVDVELKGSD 255
Query: 145 SLSL-------HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
++L + + Y + + Y + +
Sbjct: 256 VITLGNGAELHFLGTNSRTAQGRNGDLYVDEYFWIPDFKRLRDLANPMASQKRYRITYFS 315
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
++ + + A I + P W++ +
Sbjct: 316 TPSTTSHPAYDFWTGAEFNVGRAESERI---KLDVSPAALAAGRHDPDGKWRQV-VTLDD 371
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF-----------IPLNIIEEAL 306
E + + R +F + F + +
Sbjct: 372 AERGGCNLFDREQLMLENAPAQFRQLFMCEFVEDGDGVFNWADVQGCLVDSFVEWGDFYK 431
Query: 307 NREPCPDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKI 360
P P+ + D A+ G +VV+ I D N I
Sbjct: 432 PFAAKPVGDLPVWLSYDPADAGDAAALVVVLAPRFSGDAFRIVERHLLHGNDFEAQANFI 491
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ ++ I++D GA + V V + + + KM
Sbjct: 492 RETMRRFNVRKIVVDKTGLGAALVQLVAKFFPAVVGVQYTQPE---------KALMVNKM 542
Query: 421 ADWLEFASLIN---HSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
D + + H + S+K+ + + S R + +D + + F
Sbjct: 543 FDLMRKNRVQWETEHRDITAAFLSIKTVATASGRNMTYVSARSRELSHSDVAWAALQCFY 602
Query: 478 ENPPRSDMDFGR 489
+ P D+ G
Sbjct: 603 QEPLGGDVSSGS 614
>gi|50121548|ref|YP_050715.1| phage terminase, ATPase subunit P [Pectobacterium atrosepticum
SCRI1043]
gi|49612074|emb|CAG75524.1| phage terminase, ATPase subunit P [Pectobacterium atrosepticum
SCRI1043]
Length = 573
Score = 91.9 bits (226), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/466 (11%), Positives = 114/466 (24%), Gaps = 53/466 (11%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI-----SVICLANSETQ 119
H N + R +G T A L + + I L+ S Q
Sbjct: 126 HWHQLGWYDNHHHRNRMLLKSRQVGATWYFAREALLRALSDDVKYKHQLNQIFLSASRRQ 185
Query: 120 LKT------TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
+ AEV L F L + + + + +
Sbjct: 186 AYQFRSFIRSAAAEVDVELKGGDMIQLFNGAEL-HFLGTSAATAQSYTGNLYFDEFFWVG 244
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + ++ + + ++ + + + N I
Sbjct: 245 QFANLKKVAGAMATLKGLTRTYFSTPSAESHEAYPFWTGEAFNKGRKNGARIEF----DT 300
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
S K D+ R + + G D + + + + QF +
Sbjct: 301 SWKTLNSGVMCPDNIWRQIVTLKDAIDHGWDLTDIDEVQLENSPEE--YEQLYNCQFIRN 358
Query: 292 DIDSFIPLNIIEEA---LNREPCPDP-------YAPLIMGCDIAEEGG---------DNT 332
+F ++ + P P P+ +G D G +
Sbjct: 359 GEAAFDYNALLTCGADGYDDWPDWKPYAMRPMADRPVWIGYDPNGSSGKGDSGGISVNAA 418
Query: 333 VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
++ + I ++ +Y I ID G ++
Sbjct: 419 PIIPGGKFRTIETQRVRGMEFEAQAALIISMLSRYNVQHIGIDGQGIGEAVWQLVKKAFP 478
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPN 449
+ + L +KM + LI +++ V
Sbjct: 479 AAVCYQFSASS---------KRMLVLKMLQIIRGGRWEYDRGERDLITAFNAVRKV-VTP 528
Query: 450 TGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
G + ++ R +G D + M + P G+ +Y
Sbjct: 529 GGVITYDTDRSRGVSHGDLAWATMLSIINEP-LGQEVGGKMTVTEY 573
>gi|213427183|ref|ZP_03359933.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
Length = 195
Score = 91.5 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 21/183 (11%)
Query: 316 APLIMGCDIAE-EGGDNTVVVLRR--------GPVIEHLFDWSKTDLRTTNNKISGLVEK 366
+ +G D A+ ++ + I W D R + I L ++
Sbjct: 13 REVWIGYDPAKGTQNGDSAGCVVIAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQ 72
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF 426
Y I ID+ G ++ V + N + L +K D +
Sbjct: 73 YNVTYIGIDSTGVGHGVYLNVKDFFPAVREFVYNP---------NVKNALVLKAYDIISH 123
Query: 427 ASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRS 483
L + + Q+ +++ + E+ R + A D + M+ P +
Sbjct: 124 RRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQG 183
Query: 484 DMD 486
+
Sbjct: 184 EAA 186
>gi|169825333|ref|YP_001691226.1| hypothetical protein M446_6968 [Methylobacterium sp. 4-46]
gi|168199255|gb|ACA21201.1| hypothetical protein M446_6968 [Methylobacterium sp. 4-46]
Length = 466
Score = 91.1 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 54/436 (12%), Positives = 122/436 (27%), Gaps = 48/436 (11%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG--------- 107
E + C P + + + GR GK+ + A + ++L + R
Sbjct: 40 EAELEIFRACTGREVPPTTPMAEAHLPTGRRAGKSFVLALIAVYLAAFREYRGYLAPGER 99
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+V+ LA Q + ++ L+ P + L
Sbjct: 100 ATVMVLAADRRQAR-VIFRYCKGLLAGSPLLANLIERET----------AEALDLANGVT 148
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-VINLGILGFLTERNANRFWIM 226
+ + E S +PD I + + +
Sbjct: 149 IEIGTASVKTTRGY-SLAAVLCDEIAFWETSEDSASPDYEILNALRPGMATI-PGSVLLC 206
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG--IIARYGLDSDVTRVEV 284
S+P G ++ F++ + R + I Y D E
Sbjct: 207 ASSPYARKGALWDAFSRHFGQDNSDVLVWRAATRVMNPTVPERTIDEAYQRDPAAAAAEY 266
Query: 285 CGQFPQQDIDSFIPLNIIEEALNRE--PCPDPYAPLIMGCDIAEEGGDNTVVVLRR---G 339
+F SF+ L++++ ++ + D + D+ + + G
Sbjct: 267 GAEFRSDIE-SFVSLDVVKACIDSGVMERLRHAGRHVAFVDPSGGSADSMTLAIAHHQAG 325
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
+ L + + ++ I + R
Sbjct: 326 KAV--LDAVREIRPPFSPEQVVEEFAGLMKSYGIREVTGD---------RYAGEWPRERF 374
Query: 400 QKRAVDLEFCRNRRTELHVKMADWLEF--ASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
+ ++ + +++L+ + L SL++H L+Q L +L+ G +I
Sbjct: 375 RVHGINYKVSEKSKSDLYRDLLPLLNSAKVSLLDHPRLVQQLVALER-RTARGGRDSI-- 431
Query: 458 KRVKGAKSTDYSDGLM 473
+G D ++ +
Sbjct: 432 DHPRGG-HDDLANAVA 446
>gi|327191373|gb|EGE58399.1| prophage MuMc02, terminase, ATPase subunit, putative [Rhizobium
etli CNPAF512]
Length = 248
Score = 91.1 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 45/259 (17%), Positives = 84/259 (32%), Gaps = 38/259 (14%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ + + + R GK+T+ A+LV+ P +
Sbjct: 23 PDPWQANLLRA--------------NPRRSMLLCSRQSGKSTVAAFLVIQTALFVPAAQI 68
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ ++ ++ Q L+ + +LS LP + S + SL K
Sbjct: 69 VVVSPTQRQ-SNELFRTIVGFLSRLPGAP--RPTAESKQGTELSNGARVLSLPGTEKTIR 125
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ ++ DEA+ D + + + + + + + P
Sbjct: 126 GIA-----------------GVDLVVMDEAARVEDALLTAVRPMMATK-PDARLVALTTP 167
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
G FYE + W+R ++ I F + + G + E +F
Sbjct: 168 AGKRGWFYEAWVSDDPSWERVRVPASACPRITQQFLDEELKALG--AIKFSEEYGLEFHD 225
Query: 291 QDIDSFIPLNIIEEALNRE 309
+ F PL IIE A +E
Sbjct: 226 PEEAVF-PLAIIEAAFTQE 243
>gi|194430584|ref|ZP_03063045.1| putative ATPase subunit of terminase [Escherichia coli B171]
gi|194411372|gb|EDX27733.1| putative ATPase subunit of terminase [Escherichia coli B171]
gi|195182963|dbj|BAG66529.1| putative terminase subunit [Escherichia coli O111:H-]
gi|195183077|dbj|BAG66637.1| probable terminase subunit [Escherichia coli O111:H-]
Length = 583
Score = 90.7 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 114/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAATAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKATHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D R +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FRNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|168789870|ref|ZP_02814877.1| putative conserved hypothetical protein [Escherichia coli O157:H7
str. EC869]
gi|261227822|ref|ZP_05942103.1| phage terminase [Escherichia coli O157:H7 str. FRIK2000]
gi|261258442|ref|ZP_05950975.1| phage terminase [Escherichia coli O157:H7 str. FRIK966]
gi|189370618|gb|EDU89034.1| putative conserved hypothetical protein [Escherichia coli O157:H7
str. EC869]
Length = 583
Score = 90.7 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 53/452 (11%), Positives = 115/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAATAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYVYW-------NGDRWNEKKAAHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D R +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FRNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I IDA G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDATGGHGDAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|193068228|ref|ZP_03049192.1| putative ATPase subunit of terminase [Escherichia coli E110019]
gi|209919043|ref|YP_002293127.1| phage terminase [Escherichia coli SE11]
gi|192958507|gb|EDV88946.1| putative ATPase subunit of terminase [Escherichia coli E110019]
gi|209912302|dbj|BAG77376.1| phage terminase [Escherichia coli SE11]
Length = 583
Score = 90.4 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 114/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAATAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYVYW-------NGDRWNEKKAAHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D R +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FRNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|323169315|gb|EFZ54991.1| terminase, ATPase subunit [Shigella sonnei 53G]
Length = 583
Score = 90.4 bits (222), Expect = 6e-16, Method: Composition-based stats.
Identities = 54/452 (11%), Positives = 115/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLP--NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L +K + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAEMHFLGTSAATAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 271 RRTCFSTPSTETHEAYAYW-------NGDRWNEKKAAHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D R +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FRNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I IDA G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTYRYNVEHIGIDATGGHGDAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|309702178|emb|CBJ01493.1| putative phage protein gpp [Escherichia coli ETEC H10407]
Length = 577
Score = 90.4 bits (222), Expect = 7e-16, Method: Composition-based stats.
Identities = 54/452 (11%), Positives = 114/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 145 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 204
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 205 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 264
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 265 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKATHKRQRFSVDWKTLHNGLICPDRT 317
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D R +F ++ +F I +
Sbjct: 318 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FRNLYMCEFVREGESAFNLNILIGCGV 375
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTV----------------VVLRRGPVIEHLFD 347
+ + P+AP MG G D V
Sbjct: 376 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 435
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 436 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 492
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 493 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 545
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 546 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 577
>gi|260868212|ref|YP_003234614.1| putative terminase large subunit protein [Escherichia coli O111:H-
str. 11128]
gi|257764568|dbj|BAI36063.1| putative terminase large subunit protein [Escherichia coli O111:H-
str. 11128]
Length = 583
Score = 90.4 bits (222), Expect = 7e-16, Method: Composition-based stats.
Identities = 54/452 (11%), Positives = 112/452 (24%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ RR + + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKATHKRRRFSVDWNTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTV----------------VVLRRGPVIEHLFD 347
+ + P+AP MG G D V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|300924610|ref|ZP_07140571.1| hypothetical protein HMPREF9548_02749 [Escherichia coli MS 182-1]
gi|300419195|gb|EFK02506.1| hypothetical protein HMPREF9548_02749 [Escherichia coli MS 182-1]
Length = 583
Score = 90.4 bits (222), Expect = 7e-16, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 117/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKATHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWEHTDIDEIRDENTEDE--FHNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDI--AEEGGDNTVVVLRR-------GPVIEHLFD 347
+ + P P+ +G D + GD+ V +
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPSVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|194439374|ref|ZP_03071452.1| putative conserved hypothetical protein [Escherichia coli 101-1]
gi|194421736|gb|EDX37745.1| putative conserved hypothetical protein [Escherichia coli 101-1]
Length = 583
Score = 90.0 bits (221), Expect = 9e-16, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 115/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + + ++ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDHWNEKKATHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D R +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FRNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|260906962|ref|ZP_05915284.1| hypothetical protein BlinB_16637 [Brevibacterium linens BL2]
Length = 249
Score = 90.0 bits (221), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/262 (16%), Positives = 74/262 (28%), Gaps = 40/262 (15%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ + + + + R +GKTT A+ L PG V
Sbjct: 24 PELWQERLLR--------------TQEARVLVLCARQVGKTTATAYKALHAAMFNPGRDV 69
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ ++ S+ Q L V+ + + S + SL
Sbjct: 70 LIVSPSQRQSDEML-RRVASLYRGMKEAPKLSRSNTS--EMGLSNGSRVVSLPGSEGGIR 126
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+I DEAS D + +L + + S P
Sbjct: 127 GFA-----------------GVKLLILDEASRVDDDVFASVLPMVASDG---QMVALSTP 166
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
G F+E+ + + W+R ++ + P + A G S V + +F
Sbjct: 167 WGRRGWFHELHQETRNGWERHKVTVYESDQYTPPRIAEVKASLG--SFVFSSDYLCEFGD 224
Query: 291 QDIDSFIPLNIIEEALNREPCP 312
+ A + P
Sbjct: 225 T-DSQLFSTENVRAAFSPGIQP 245
>gi|288353317|ref|YP_003422615.1| protein of unknown function DUF264 [Zymomonas mobilis subsp.
mobilis ZM4]
gi|285026718|gb|ADC33812.1| protein of unknown function DUF264 [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 591
Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/461 (11%), Positives = 119/461 (25%), Gaps = 48/461 (10%)
Query: 55 QLEFMEVVDAH---CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
Q+E + + + N + I R IG T A+ L +
Sbjct: 128 QVEQLRDIFENSLYDYQRRWYDNRDQRNRMILKARQIGATYYFAFEALLDALKTGRNEIF 187
Query: 112 CLANSET--QLKTTLWAEVSK---------WLSLLPNKHWFEMQSLSLHPAPWYSDVLHC 160
A+ Q ++ + A + L + +
Sbjct: 188 LSASRAQALQFRSYIVAFAKQVGVNLTGDPMLITSEVLPANTPAAEFHFLGTNFRTAQGR 247
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + H + + + ++ +R
Sbjct: 248 HGNLYFDEFFWTFGFEELFKVASGMATHKKWRRTLFSTPSTIAHAAYAYWNGERHNKRKK 307
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+ I + +F + + +D G D E + A Y +
Sbjct: 308 KQEQIDVDVSH-EALRFGALGPDRVWR-NVVTVDDAAAGGCDLFDIEELKAEYSAEE--F 363
Query: 281 RVEVCGQFPQQDIDSF----------IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
QF + +F L ++ + P P+ G D
Sbjct: 364 ANLFGCQFVDDSLSAFSFESLKNAMVDSLADWDDFNPQLERPFGDRPVWAGYDPQNSEEG 423
Query: 331 NTVVVL--------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
+ ++ I D + I + +Y + I+ + G
Sbjct: 424 DNAALVILAPPEKTGGKFRILERCQLRGLDFQQQATFIKDKLSRYNCTYLGIERSGIGDA 483
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQNL 439
C ++ + R+ E+ + + +K + L L + + +
Sbjct: 484 VCQCIDNEINGIVRI---------EYSLETKQRMVMKAQNLLRLGRLEMDAECIDIASSF 534
Query: 440 KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
S+K I + + S R + D + +M+ P
Sbjct: 535 ISIKKTITNSGKAITFRSDRARDIGHADLAWAIMHVLINEP 575
>gi|332342317|gb|AEE55651.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 583
Score = 89.6 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 115/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + +CR + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVCRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKATHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
++ I +Y + I ID G ++ +
Sbjct: 442 VQGLEIEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|213618708|ref|ZP_03372534.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 282
Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/272 (15%), Positives = 81/272 (29%), Gaps = 21/272 (7%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR K+ A ++L C A Q++ + V L + ++
Sbjct: 30 GGRSSSKSWDAAGFAIFLA--NKYSLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH 84
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + E + G + +EA
Sbjct: 85 --------RFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGI-----DVLWLEEAHAL 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + + + W + + + P +D +I+ +
Sbjct: 132 TEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEDTLIRKINYDENPFLSD 190
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMG 321
+ + I A D + G D + I L+ IE A++ D P +G
Sbjct: 191 TMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAHKVLDFGPEGRKRIG 250
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D+A+ G D V R G VI +W +
Sbjct: 251 FDVADSGADKCANVYRYGSVIYWADEWKAKED 282
>gi|209694357|ref|YP_002262285.1| putative bacteriophage terminase [Aliivibrio salmonicida LFI1238]
gi|208008308|emb|CAQ78458.1| putative bacteriophage terminase [Aliivibrio salmonicida LFI1238]
Length = 598
Score = 89.2 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/462 (9%), Positives = 113/462 (24%), Gaps = 42/462 (9%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+Q + +N R IG + ++ V
Sbjct: 158 FQYQKDIHAHKGDERINEQRFYLK---------SRQIGLSDYFSFEAFEDAVLTGDNQVF 208
Query: 112 CLAN-SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL----HPAPWYSDVLHCSLGIDS 166
A+ + ++ + + + + K + + + + +
Sbjct: 209 ISASRKQAEIFKNYIRKFALQIGGVELKGKDSITLSNGAEFHFMSTNVFTSQGFNGHMYY 268
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
M + + Y ++ +S + + + +
Sbjct: 269 DEVFWMPNFQRLDDYAGGMSIQAQYRTTYLSTPSSTAHEAYPKWTGPKDKGIDISHKALK 328
Query: 227 TSNPRRLSGKFYEIFNKP---LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD--VTR 281
+ G F ++ F +D + S + ++ LD
Sbjct: 329 KGA-MGVDGVFRQMITVDDAIKGGATFFNMDKLRRKYPIKSIFDNVLRCVFLDDSASFFN 387
Query: 282 VEVCGQFPQQDIDSF-IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV----- 335
++ I + A + E Y P G A+ D +V+
Sbjct: 388 IKALLACKTDTSKWKTIDMGKCRPAGDLEV-LVGYDPR--GGGQADGSDDAGLVISLKPL 444
Query: 336 -LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
+ I G+ EKY + +D + G+ + + +
Sbjct: 445 KKGGVFRFLERIRLKGSSYEEQAKAIEGITEKYHVVHLEMDTSGVGSAVAELVRKFYPSL 504
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTG 451
V + + K + + L ++ + ++ +
Sbjct: 505 KEVNYSPE---------VKRMMAYKAREIINAGRLQFDDSWDDVVHSFLMIRQHTTKASN 555
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSY 493
++ + S R K D + M+ P D S+
Sbjct: 556 QITMISTRTKRGSHADLAWAAMHVLHWEPIDILNDHSTTVSF 597
>gi|323158440|gb|EFZ44458.1| terminase, ATPase subunit [Escherichia coli E128010]
Length = 488
Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 56 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 115
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 116 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 175
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 176 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 228
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 229 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 286
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 287 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 346
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 347 VQGLEFEEQARVIEEFTYRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 403
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 404 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 456
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 457 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 488
>gi|330004400|ref|ZP_08304921.1| phage terminase, large subunit, PBSX family [Klebsiella sp. MS
92-3]
gi|328536646|gb|EGF62969.1| phage terminase, large subunit, PBSX family [Klebsiella sp. MS
92-3]
Length = 418
Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats.
Identities = 59/410 (14%), Positives = 109/410 (26%), Gaps = 49/410 (11%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ +V H +P FK + AGR GK+ L+ ++ + V +A +
Sbjct: 7 LSLVQLHSGQMKVFKSPHRFKV-VCAGRRWGKSRLSISKIIKAAAADRKQRVWYVAPTYQ 65
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ LW ++ + L P W + ++ I +
Sbjct: 66 MARQILWDDLQEVL-----------------PRKWIAKKNDTTMTI----VLKNGSEIAL 104
Query: 179 ERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ D ++ DE PD + L+ I T K
Sbjct: 105 KGADKPDTLRGVALNFVVLDEFQDMKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKL 164
Query: 238 YEIFNKPL----DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ I P WK +Q T + S E D E F
Sbjct: 165 FMIGQNPEMQAKGLWKSWQFVTADSPFVPDSEIEAAKNDM--DPKSFAQEYLASFENMSG 222
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP---VIEHLFDWSK 350
+ P + R +P P+ +G D ++V++ +
Sbjct: 223 RVYYPFD--RNVHVRPLQFNPRLPIWVGQDF-NIDPMSSVILQPQPNGEVWAIDEVVLFS 279
Query: 351 TDLRTTNNKI-SGLVEKYRPDAIIIDANNT------GARTCDYLEMLGY-HVYRVLGQKR 402
++ +++ + + D G D + G+ V
Sbjct: 280 SNTSEVCDELERRYWRQKSQVTVFPDPAGAYRQHARGESDVDIFKEKGFMRVDHPKKHPP 339
Query: 403 AVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
D NR + L ++SL+ I G
Sbjct: 340 IADRVNAVNR------LLLTASGDVRLYIDPKCKHLIESLEKVIYKPGGR 383
>gi|323187026|gb|EFZ72343.1| terminase, ATPase subunit [Escherichia coli RN587/1]
Length = 583
Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 116/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKATHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDI--AEEGGDNTVVVLRR-------GPVIEHLFD 347
+ + P P+ +G D + GD+ V +
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPSVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|283787254|ref|YP_003367119.1| large terminase subunit [Citrobacter rodentium ICC168]
gi|282950708|emb|CBG90384.1| putative large terminase subunit [Citrobacter rodentium ICC168]
Length = 583
Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/452 (11%), Positives = 116/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDI--AEEGGDNTVVVLRR-------GPVIEHLFD 347
+ + P P+ +G D + GD+ V +
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPSVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|82543912|ref|YP_407859.1| terminase subunit [Shigella boydii Sb227]
gi|81245323|gb|ABB66031.1| probable terminase subunit [Shigella boydii Sb227]
gi|320187267|gb|EFW61965.1| Phage terminase, ATPase subunit [Shigella flexneri CDC 796-83]
gi|332096063|gb|EGJ01068.1| terminase, ATPase subunit [Shigella boydii 3594-74]
Length = 583
Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/452 (11%), Positives = 116/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDI--AEEGGDNTVVVLRR-------GPVIEHLFD 347
+ + P P+ +G D + GD+ V +
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPSVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|195182872|dbj|BAG66442.1| probable terminase subunit [Escherichia coli O111:H-]
Length = 583
Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|300901708|ref|ZP_07119764.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|300354882|gb|EFJ70752.1| conserved hypothetical protein [Escherichia coli MS 198-1]
Length = 583
Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + S+
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQEAASEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAATAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|193065322|ref|ZP_03046394.1| putative conserved hypothetical protein [Escherichia coli E22]
gi|192927116|gb|EDV81738.1| putative conserved hypothetical protein [Escherichia coli E22]
Length = 583
Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPHPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|312966883|ref|ZP_07781101.1| terminase, ATPase subunit [Escherichia coli 2362-75]
gi|312288347|gb|EFR16249.1| terminase, ATPase subunit [Escherichia coli 2362-75]
Length = 583
Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTYRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|260855864|ref|YP_003229755.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
gi|257754513|dbj|BAI26015.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
Length = 583
Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKATHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTYRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|297519140|ref|ZP_06937526.1| Terminase, ATPase subunit [Escherichia coli OP50]
Length = 159
Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 12/149 (8%)
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
I W D R + I L E+Y I ID+ + ++ V +
Sbjct: 9 KFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVDHGVYENVKAFFPAVREFV 68
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAI 455
N + L +K D + L + + Q+ +++ +
Sbjct: 69 YNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTY 119
Query: 456 ESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
E+ R + A D + M+ P + +
Sbjct: 120 EASRSEEASHADLAWATMHALFNEPLQGE 148
>gi|260844036|ref|YP_003221814.1| putative terminase large subunit [Escherichia coli O103:H2 str.
12009]
gi|257759183|dbj|BAI30680.1| probable terminase large subunit [Escherichia coli O103:H2 str.
12009]
gi|323978131|gb|EGB73217.1| terminase [Escherichia coli TW10509]
Length = 583
Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTV----------------VVLRRGPVIEHLFD 347
+ + P+AP MG G D V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|191168729|ref|ZP_03030507.1| putative conserved hypothetical protein [Escherichia coli B7A]
gi|190901219|gb|EDV60990.1| putative conserved hypothetical protein [Escherichia coli B7A]
Length = 583
Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVVQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKATHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|315034678|gb|EFT46610.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
Length = 519
Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/435 (12%), Positives = 123/435 (28%), Gaps = 52/435 (11%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS---LLP 136
+ GK+ L++ + +WL +A + + V+ L
Sbjct: 83 IIVVTPSQYGKSWLSSRIAVWLADHNRRC---YVAGGKKDTTDIIMQHVTDTLQTVDESI 139
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ E S G S ++ + + I
Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196
Query: 197 NDEASGTPDVINLGI--LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE++ + + F N SNP G+FY+ + +
Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNPHNK-GRFYDKLTQENIPKGMLVVW 255
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVE------VCGQFPQQDIDSFIPLNIIEEALNR 308
+ + I S+ + + + P ++ D E
Sbjct: 256 ADVRTAFEEDRVKSIEQVIS--SEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE----- 308
Query: 309 EPCPDPYAPLIMGCDIAEEGGDN-----TVVVLRRGPVIEHLFDWSKTDLRTTNNKIS-- 361
E + +G D A +G D + + + + + K D +
Sbjct: 309 EEHTEKDWEYFLGVDSAYKGKDKIKATLSALDAQGQVHVIDTIEIEKGDWQDGVTSKKII 368
Query: 362 ---GLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKR----AVDLEFC--- 409
++ ++ + G + L + + ++ + V+
Sbjct: 369 TQLLMIIEHFDVKGVCVDVGYGVYIVEGLAHINGDFELHGINFGAGTTKERVEKNHYSAK 428
Query: 410 --RNRRTELHVKMADWLEFASLINHSGLIQN---LKSLKSFIVPNTGELAIESK---RVK 461
N+R E+H+ + + ++ ++ + + L S + + G+ AI K + K
Sbjct: 429 YGANKRAEMHIDLQENIDNRNIFFTEKVYEEVIDELVLISSKIKSNGKTAIVPKEEIKAK 488
Query: 462 GAKSTDYSDGLMYTF 476
S D D ++ +
Sbjct: 489 LGHSPDTLDSVLLSL 503
>gi|323186176|gb|EFZ71530.1| terminase, ATPase subunit [Escherichia coli 1357]
Length = 583
Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|323152788|gb|EFZ39060.1| terminase, ATPase subunit [Escherichia coli EPECa14]
Length = 577
Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 145 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 204
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 205 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 264
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 265 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKATHKRQRFSVDWKTLHNGLICPDRT 317
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 318 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 375
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 376 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 435
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 436 VQGLEFEEQARVIEEFTYRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 492
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 493 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 545
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 546 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 577
>gi|291282861|ref|YP_003499679.1| putative phage protein gpP [Escherichia coli O55:H7 str. CB9615]
gi|293410240|ref|ZP_06653816.1| terminase [Escherichia coli B354]
gi|331658424|ref|ZP_08359386.1| terminase, ATPase subunit (GpP) [Escherichia coli TA206]
gi|290762734|gb|ADD56695.1| Putative phage protein gpP [Escherichia coli O55:H7 str. CB9615]
gi|291470708|gb|EFF13192.1| terminase [Escherichia coli B354]
gi|320641844|gb|EFX11221.1| putative phage protein gpP [Escherichia coli O157:H7 str. G5101]
gi|320647212|gb|EFX16029.1| putative phage protein gpP [Escherichia coli O157:H- str. 493-89]
gi|320652498|gb|EFX20781.1| putative phage protein gpP [Escherichia coli O157:H- str. H 2687]
gi|320668567|gb|EFX35381.1| putative phage protein gpP [Escherichia coli O157:H7 str. LSU-61]
gi|331056672|gb|EGI28681.1| terminase, ATPase subunit (GpP) [Escherichia coli TA206]
Length = 583
Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTYRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|323180857|gb|EFZ66396.1| terminase, ATPase subunit [Escherichia coli 1180]
Length = 577
Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 145 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 204
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 205 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 264
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 265 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKATHKRQRFSVDWKTLHNGLICPDRT 317
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 318 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 375
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 376 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 435
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 436 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 492
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 493 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 545
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 546 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 577
>gi|291326278|ref|ZP_06123867.2| terminase, ATPase subunit [Providencia rettgeri DSM 1131]
gi|291314958|gb|EFE55411.1| terminase, ATPase subunit [Providencia rettgeri DSM 1131]
Length = 574
Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 57/470 (12%), Positives = 116/470 (24%), Gaps = 55/470 (11%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ + N + K R IG T A L + A S
Sbjct: 127 LFEYQRQWWDERTQRNRFILK-----SRQIGATWYFAREALLTALETGNNQIFLSA-SRA 180
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSL-------HPAPWYSDVLHCSLGIDSKHYST 171
Q + + L+ + L + + +
Sbjct: 181 QAFQ--FKRFIQLLARQVGVELKGGDEIMLSNGAILFFLGTAAATAQSYTGDLYFDEVFW 238
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ R + + + + +S + F + + +
Sbjct: 239 VSRFLELRKVASAMATQTGLRRTYFSTPSSEDHEAYEFWTGDFYNKGKPEKERKIIELSH 298
Query: 232 RLSGKFYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ W++ I G++ E I D R +F +
Sbjct: 299 K---VLKLGHYCADSMWRQIVNIHDAIARGLNRVNLEEIKDENPPDD--FRNLYECEFVK 353
Query: 291 QDIDSFIPLNIIEEALNR-----EPCPDPY-------APLIMGCDIAEEGGD-------- 330
+F +I ++ P PY P+ +G D G +
Sbjct: 354 TGERAFSYDALINCGVDGYNSDVWPDWKPYAPRPLGNRPVWVGADPTGTGDNGDGLGLVV 413
Query: 331 -NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ V I ++I + ++Y +I ID L +
Sbjct: 414 ASPPAVSGGKFRIIETIQLRGMAFEKQADEIKRITQRYNVLSITIDGTGGTGAAVHELVV 473
Query: 390 LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS----GLIQNLKSLKSF 445
+ +L + KM + + LI + ++K
Sbjct: 474 KFFPAANLLNYSAPIKRMMIM--------KMLMLIRNGRFEYDAGLHKPLITSFMTIKKV 525
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+G + ES RV+G D + M F+ S+ ++
Sbjct: 526 Q-TQSGIITYESSRVRGLDHGDLAWAAMNIFSNEAISSETGGAGAQVMEF 574
>gi|91209969|ref|YP_539955.1| putative phage protein gpP [Escherichia coli UTI89]
gi|260855549|ref|YP_003229440.1| putative large subunit terminase [Escherichia coli O26:H11 str.
11368]
gi|91071543|gb|ABE06424.1| putative phage protein gpP [Escherichia coli UTI89]
gi|257754198|dbj|BAI25700.1| putative large subunit terminase [Escherichia coli O26:H11 str.
11368]
gi|294491291|gb|ADE90047.1| terminase, ATPase subunit [Escherichia coli IHE3034]
Length = 583
Score = 88.4 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTV----------------VVLRRGPVIEHLFD 347
+ + P+AP MG G D V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTYRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|315576663|gb|EFU88854.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
Length = 519
Score = 88.4 bits (217), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/435 (12%), Positives = 124/435 (28%), Gaps = 52/435 (11%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS---LLP 136
+ GK+ L++ + +WL +A + + V+ L
Sbjct: 83 IIVVTPSQYGKSWLSSRIAVWLADHNRRC---YVAGGKKDTTDIIMQHVTDTLQTVDESI 139
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ E S G S ++ + + I
Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196
Query: 197 NDEASGTPDVINLGI--LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE++ + + F N SNP G+FY+ + +
Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNPHNK-GRFYDKLTQENIPKGMLVVW 255
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVE------VCGQFPQQDIDSFIPLNIIEEALNR 308
+ + I S+ + + + P ++ D E
Sbjct: 256 ADVRTAFEEDRVKSIEQVIS--SEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE----- 308
Query: 309 EPCPDPYAPLIMGCDIAEEGGDN-----TVVVLRRGPVIEHLFDWSKTDLRTTNNKIS-- 361
E + +G D A +G D + + + + + K D +
Sbjct: 309 EEHTEKNWEYFLGVDSAYKGKDKIKATLSALDAQGQVHVIDTIEIEKGDWQDGVTSKKII 368
Query: 362 ---GLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKR----AVDLEFC--- 409
++ ++ + G + L + + ++ + V+ +
Sbjct: 369 TQLLMIIEHFEVKGVCVDVGYGVYIVEGLAHINGDFELHGINFGAGTTKERVEKKHYSAK 428
Query: 410 --RNRRTELHVKMADWLEFASLINHSGLIQN---LKSLKSFIVPNTGELAIESK---RVK 461
N+R E+H+ + + ++ ++ + + L S + + G+ AI K + K
Sbjct: 429 YGANKRAEMHIDLQENIDNRNIFFTEKVYEEVIDELVLVSSKIKSNGKTAIVPKEEIKAK 488
Query: 462 GAKSTDYSDGLMYTF 476
S D D ++ +
Sbjct: 489 LGHSPDTLDSVLLSL 503
>gi|331683434|ref|ZP_08384035.1| terminase, ATPase subunit (GpP) [Escherichia coli H299]
gi|331079649|gb|EGI50846.1| terminase, ATPase subunit (GpP) [Escherichia coli H299]
Length = 583
Score = 88.4 bits (217), Expect = 3e-15, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTYRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|297569231|ref|YP_003690575.1| hypothetical protein DaAHT2_1260 [Desulfurivibrio alkaliphilus
AHT2]
gi|296925146|gb|ADH85956.1| conserved hypothetical protein [Desulfurivibrio alkaliphilus AHT2]
Length = 465
Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 59/475 (12%), Positives = 114/475 (24%), Gaps = 59/475 (12%)
Query: 23 EIKLSFSNFVLHFF--PWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
+ + F F W L Q + + C P V +
Sbjct: 5 QAAQDPALFARWFKQGDWSAWFAFLSAVFGLEMNQEQ--RRIFETCTGRQKAPESPVKEA 62
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPG---------ISVICLANSETQLKTTLWAEVSKW 131
+ GR GK+ A + ++L + +V+ LA Q +T +
Sbjct: 63 WLVVGRRGGKSFTTALIAVYLAAFHDYRQFLQPGERGTVLILAADRKQARTI-FRYARAM 121
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ +P + L Y R T V
Sbjct: 122 VLEIPMLAGLLERET----------ADGLELKNSVSIEIATAS-YRATRGYTVVAALLDE 170
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
D + I I + +++S + + D
Sbjct: 171 IAFWFTD-GANPDHEIVNAIQPGMATIPNAMMLVLSSPYAKQGELYRAYRESFGADDPEV 229
Query: 252 QIDTRTVEGIDPSFHEGII-ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--- 307
+ + ++PS + II Y D E GQF F+ +++
Sbjct: 230 LVWQADTKTMNPSVPDRIIQRAYDRDPAAAAAEYGGQFRDDLE-QFVSREVVDSCTREEP 288
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNT--VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
E P D + D+ + R G + ++ +
Sbjct: 289 TELPPISSNRYYGFTDPSGGSADSMTLAISHREGDRVVIDAVREAKPPFNPSDVVKEFAA 348
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
+ + G R + ++ + RTEL+ M +
Sbjct: 349 CLK-AYGLRRVTGD---------RYGGEWPRERFRDAGIEYDLADRARTELYRDMLPMMN 398
Query: 426 --FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKST-----DYSDGLM 473
+ L L +L+ + D ++ L
Sbjct: 399 AANIEIPPVVKLTGQLTNLQRRKGRSG---------KDIIDHPPGGHDDLANALA 444
>gi|319645791|ref|ZP_08000021.1| YonF protein [Bacillus sp. BT1B_CT2]
gi|317391541|gb|EFV72338.1| YonF protein [Bacillus sp. BT1B_CT2]
Length = 589
Score = 88.0 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/415 (11%), Positives = 112/415 (26%), Gaps = 88/415 (21%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
A RG GKT L + PG ++ + ++ Q + + ++ PN
Sbjct: 84 ASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVI-EKIDDLRKESPN------ 136
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L + + + + + + G + +I DE
Sbjct: 137 --LKREIEDLKTSTNDARVEFHNGSWIKI--------VASNDGARSKRANLLIVDEFRMV 186
Query: 204 P-DVINLGILGFLTERNANRFWI----MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
++I+ + FLT + ++ R + K + RF +
Sbjct: 187 DFEIISKVLRKFLTAPRSPKYLEKEEYAHLKERNKEIYLSSCWYKVHWSYGRFVTYFNAM 246
Query: 259 -------------------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS---- 295
+D + ++ D +E+ + + +
Sbjct: 247 MKGSKYFVCGLPYQIAIREGLLDKDQVKDEMSEEDFDPIGWSMEMEALWFGESEKAYFKF 306
Query: 296 ------------FIPLNIIEEALNREPCPDPYAPLIMGC------DIAEEGGDNTVVVL- 336
P + + + + P + +A + D +V +
Sbjct: 307 EDLEKNRKLASPLFPPDYYDLIKDSNFKFENKKPGELRLISNDIAGMAGKDNDASVYTVF 366
Query: 337 -------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-- 387
I ++ + +I L E Y D I++D + G D L
Sbjct: 367 RLIPNSNGYDRHIVYMESIVGGHTGSQATRIRQLFEDYACDYIVLDTQSIGLGVYDALCQ 426
Query: 388 ------EMLGYHVYRVLGQKRAVDLEFCRNR---------RTELHVKMADWLEFA 427
Y + ++ + +N +L+ ++A L+
Sbjct: 427 PLYDKERAKEYEPLSCINDEKMAERCTYQNAEKLIYSIKGNAQLNSEIAVLLKDG 481
>gi|300896792|ref|ZP_07115295.1| terminase, ATPase subunit family protein [Escherichia coli MS
198-1]
gi|300359367|gb|EFJ75237.1| terminase, ATPase subunit family protein [Escherichia coli MS
198-1]
Length = 391
Score = 88.0 bits (216), Expect = 4e-15, Method: Composition-based stats.
Identities = 49/395 (12%), Positives = 94/395 (23%), Gaps = 42/395 (10%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 14 EYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 68
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 69 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 126
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 127 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 186
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 187 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 243
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 244 SVFPFEELQRCMVDTLEEWEDYAPFAAHPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 303
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G +
Sbjct: 304 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR--------- 354
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH 432
A D+ + +T + +K D + L
Sbjct: 355 SFYPAARDIRYTPELKTAMVLKAKDVIRRGCLEYD 389
>gi|324115368|gb|EGC09330.1| gpp [Escherichia coli E1167]
Length = 141
Score = 87.7 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 12/140 (8%)
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCR 410
D T I L EKY + I IDA G + A D+ +
Sbjct: 1 MDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVR---------SFYPAARDIRYTP 51
Query: 411 NRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD 467
+T + +K D + L + + + +++ + + E+ R + A D
Sbjct: 52 EMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHAD 111
Query: 468 YSDGLMYTFAENPPRSDMDF 487
+ M+ P + +
Sbjct: 112 LAWATMHALLNEPLTAGIST 131
>gi|29376621|ref|NP_815775.1| hypothetical protein EF2112 [Enterococcus faecalis V583]
gi|257090386|ref|ZP_05584747.1| predicted protein [Enterococcus faecalis CH188]
gi|307276045|ref|ZP_07557178.1| hypothetical protein HMPREF9521_01673 [Enterococcus faecalis
TX2134]
gi|29344085|gb|AAO81845.1| hypothetical protein EF_2112 [Enterococcus faecalis V583]
gi|256999198|gb|EEU85718.1| predicted protein [Enterococcus faecalis CH188]
gi|306507375|gb|EFM76512.1| hypothetical protein HMPREF9521_01673 [Enterococcus faecalis
TX2134]
Length = 519
Score = 87.7 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 53/435 (12%), Positives = 123/435 (28%), Gaps = 52/435 (11%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS---LLP 136
+ GK+ L++ + +WL +A + + V+ L
Sbjct: 83 IIVVTPSQYGKSWLSSRIAVWLADHNRRC---YVAGGKKDTTDIIMQHVTDTLQTVDESI 139
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ E S G S ++ + + I
Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196
Query: 197 NDEASGTPDVINLGI--LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE++ + + F N SNP G+FY+ + +
Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNPHNK-GRFYDKLTQENIPKGMLVVW 255
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVE------VCGQFPQQDIDSFIPLNIIEEALNR 308
+ + I S+ + + + P ++ D E
Sbjct: 256 ADVRTAFEEDRVKSIEQVIS--SEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE----- 308
Query: 309 EPCPDPYAPLIMGCDIAEEGGDN-----TVVVLRRGPVIEHLFDWSKTDLRTTNNKIS-- 361
E + +G D A +G D + + + + + K D +
Sbjct: 309 EEHTEKNWEYFLGVDSAYKGKDKIKATLSALDAQGQVHVIDTIEIEKGDWQDGVTSKKII 368
Query: 362 ---GLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKR----AVDLEFC--- 409
++ ++ + G + L + + ++ + V+
Sbjct: 369 TQLLMIIEHFEVKGVCVDVGYGVYIVEGLAHINGDFELHGINFGAGTTKERVEKNHYSAK 428
Query: 410 --RNRRTELHVKMADWLEFASLINHSGLIQN---LKSLKSFIVPNTGELAIESK---RVK 461
N+R E+H+ + + ++ ++ + + L S + + G+ AI K + K
Sbjct: 429 YGANKRAEMHIDLQENIDNRNIFFTEKVYEEVIDELVLVSSKIKSNGKTAIVPKEEIKAK 488
Query: 462 GAKSTDYSDGLMYTF 476
S D D ++ +
Sbjct: 489 LGHSPDTLDSVLLSL 503
>gi|329889767|ref|ZP_08268110.1| terminase, ATPase subunit [Brevundimonas diminuta ATCC 11568]
gi|328845068|gb|EGF94632.1| terminase, ATPase subunit [Brevundimonas diminuta ATCC 11568]
Length = 643
Score = 87.7 bits (215), Expect = 5e-15, Method: Composition-based stats.
Identities = 58/491 (11%), Positives = 114/491 (23%), Gaps = 61/491 (12%)
Query: 55 QLEFMEVVDAH----CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E + + + + R IG T A L +
Sbjct: 166 QVEILRQRFQDELFDYQRIWYGARTHKARMILKS-RQIGATWYFAREALMEALDTGDNQI 224
Query: 111 ICLANSET--QLKTTLWAEVSKWLS-------------LLPNKHWFEMQSLSLHPAPWYS 155
A+ + Q K+ + V + P + Q
Sbjct: 225 FLSASKKQACQFKSYIIEFVRLTIGVELKGEDLVIDRGDHPETGLPQTQPTLYFLGTNSR 284
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
+ + + E + + H Y + I+ S +
Sbjct: 285 TAQSYHGSLYFDEFMWVHGFTRLEDVASGMASHKQYRITYISTPTSVNDEAYPFWTGAAW 344
Query: 216 TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGL 275
+ A R + +S K + D R + + + +
Sbjct: 345 NKERAKRDRVEF----DVSWKALKDGRLCEDGIWRQIVTIEDAAACGCTLFDLADLKRRK 400
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP--------------YAPLIMG 321
+ F S P+ + E + +
Sbjct: 401 SAAAWANLYMCAFVDD-SMSIFPMASLRPCQVDELEWSDIDFEMQLLGFGRPYEGEVWLS 459
Query: 322 CDI---AEEGGDNTVVVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
D E + +V++ + + + +D I + +Y
Sbjct: 460 YDPNGDGENADNAALVLVAPPETPGKGKFRVIWKEQFRGSDFTEQALIIEAMALRYNVTK 519
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN 431
I ID G + L +T L K + + L
Sbjct: 520 IDIDRTGLGNAVLQLVSKFFPMARGHLYDPM---------VKTRLVHKALNVISRKRLEY 570
Query: 432 H---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L L S++ + L E+ R K + D + LM P + +
Sbjct: 571 PANWQDLTNALMSIRRTLTSKGRHLTYEAPRTKASGHGDLAWALMQALDNEPLEAAIGVT 630
Query: 489 RCPSYQYEGVD 499
S + G D
Sbjct: 631 SQSSVEIFGDD 641
>gi|182682964|ref|YP_001837088.1| terminase, large subunit [Enterobacteria phage EPS7]
gi|182630676|gb|ACB97608.1| terminase, large subunit [Enterobacteria phage EPS7]
Length = 438
Score = 87.7 bits (215), Expect = 5e-15, Method: Composition-based stats.
Identities = 47/321 (14%), Positives = 95/321 (29%), Gaps = 38/321 (11%)
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
+P R +GK+ + A+ + +L P + V+ +A + + W+++
Sbjct: 47 NALEDPRHRFVTACVSRRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYSLA-NIGWSQIR 104
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ Y D + +
Sbjct: 105 GLIKK-------------------YGLQTERENAKDKEIELANGSLFKLASAAQADSAVG 145
Query: 190 TYGMAIINDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI-FNKPL 245
II DEA+ + ++ + L + N+ +I T +FYE FN+ L
Sbjct: 146 RSYDFIIFDEAAISDVGGAAFDIQLRPTLDKPNSKALFISTPRGGNWFKEFYEKGFNETL 205
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE- 304
+W R D + E + R E F + F N IE
Sbjct: 206 PNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFNAIEHV 263
Query: 305 ----ALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR-----RGPVIEHLFDWSKTDLRT 355
+ D ++G D+ V+ ++ + + ++
Sbjct: 264 KDLKGMRHFFKDDEAFETLLGIDVG-YRDPTAVLTIKYHYDTDVYYVLEEYQQAEKTTAQ 322
Query: 356 TNNKISGLVEKYRPDAIIIDA 376
I +++Y D I +D+
Sbjct: 323 HATYIQHCIDRYNVDRIFVDS 343
>gi|213027809|ref|ZP_03342256.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 141
Score = 87.3 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 12/139 (8%)
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
D R + I L E+Y I ID+ G + ++ V +
Sbjct: 1 RGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFVYNP------- 53
Query: 409 CRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
N + L +K D + L + + Q+ +++ + E+ R + A
Sbjct: 54 --NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASH 111
Query: 466 TDYSDGLMYTFAENPPRSD 484
D + M+ P + +
Sbjct: 112 ADLAWATMHALFNEPLQGE 130
>gi|215486902|ref|YP_002329333.1| predicted terminase, ATPase subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|215264974|emb|CAS09360.1| predicted terminase, ATPase subunit [Escherichia coli O127:H6 str.
E2348/69]
Length = 583
Score = 87.3 bits (214), Expect = 6e-15, Method: Composition-based stats.
Identities = 54/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTV----------------VVLRRGPVIEHLFD 347
+ + P+AP MG G D V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTYRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLHIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|194432861|ref|ZP_03065145.1| putative conserved hypothetical protein [Shigella dysenteriae 1012]
gi|194418849|gb|EDX34934.1| putative conserved hypothetical protein [Shigella dysenteriae 1012]
gi|332090210|gb|EGI95309.1| terminase, ATPase subunit [Shigella dysenteriae 155-74]
Length = 583
Score = 86.9 bits (213), Expect = 6e-15, Method: Composition-based stats.
Identities = 52/452 (11%), Positives = 113/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLTALRDNVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NDDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCSV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTYRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|320658087|gb|EFX25832.1| putative large terminase subunit [Escherichia coli O55:H7 str.
3256-97 TW 07815]
Length = 583
Score = 86.9 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 54/452 (11%), Positives = 115/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWDFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + S+ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R I V G + + I D +F ++ +F I +
Sbjct: 324 WRQIITLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD-------NTVVVLRRGPVIEHLFDW- 348
+ + P P+ +G D G+ V G +
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGHFRTVETRR 441
Query: 349 -SKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGI 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|255975409|ref|ZP_05425995.1| predicted protein [Enterococcus faecalis T2]
gi|255968281|gb|EET98903.1| predicted protein [Enterococcus faecalis T2]
Length = 519
Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 55/435 (12%), Positives = 124/435 (28%), Gaps = 52/435 (11%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS---LLP 136
+ GK+ L++ + +WL +A + + V+ L
Sbjct: 83 IIVVTPSQYGKSWLSSRIAVWLADHNRRC---YVAGGKKDTTDIIMQHVTDTLQTVDESI 139
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ E S G S ++ + + I
Sbjct: 140 ARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD---YI 196
Query: 197 NDEASGTPDVINLGI--LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE++ + + F N SNP G+FY+ + +
Sbjct: 197 IDESAFVSNETYAELGRRNFANVDGKNYLSFEISNPHNK-GRFYDKLTQENIPKGMLVVW 255
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVE------VCGQFPQQDIDSFIPLNIIEEALNR 308
+ + I S+ + + + P ++ D E
Sbjct: 256 ADVRTAFEEDRVKSIEQVIS--SEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE----- 308
Query: 309 EPCPDPYAPLIMGCDIAEEGGDN-----TVVVL---RRGPVIEHLFDWSKTDLRTTNNKI 360
E + +G D A +G D + + + + D T+ I
Sbjct: 309 EEHTEKNWEYFLGVDSAYKGKDKIKATLSALDAQGQVHVIDTIEIEKGNWQDGVTSKKII 368
Query: 361 SGL--VEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKR----AVDLEFC--- 409
+ L + ++ + G + L + + ++ + V+
Sbjct: 369 TQLLMIIEHFEVKGVCVDVGYGVYIVEGLAHINGDFELHGINFGAGTTKERVEKNHYSAK 428
Query: 410 --RNRRTELHVKMADWLEFASLINHSGLIQN---LKSLKSFIVPNTGELAIESK---RVK 461
N+R E+H+ + + ++ ++ + + L S + + G+ AI K + K
Sbjct: 429 YGANKRAEMHIDLQENIDNRNIFFTEKVYEEVIDELVLVSSKIKSNGKTAIVPKEEIKAK 488
Query: 462 GAKSTDYSDGLMYTF 476
S D D ++ +
Sbjct: 489 LGHSPDTLDSVLLSL 503
>gi|46401884|ref|YP_006983.1| terminase, large subunit [Enterobacteria phage T5]
gi|45775062|gb|AAS77194.1| terminase, large subunit [Enterobacteria phage T5]
gi|59897286|gb|AAX12081.1| ORF144 [Enterobacteria phage T5]
Length = 438
Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 45/321 (14%), Positives = 94/321 (29%), Gaps = 38/321 (11%)
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
+P R +GK+ + A+ + +L P + V+ +A + + W+++
Sbjct: 47 NALEDPRHRFVTACVSRRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYSLA-NIGWSQIR 104
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ Y D + +
Sbjct: 105 GLIKK-------------------YGLQTERENAKDKEIELANGSLFKLASAAQADSAVG 145
Query: 190 TYGMAIINDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI-FNKPL 245
II DEA+ + D + + L + N+ +I T +FY F+ L
Sbjct: 146 RSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKALFISTPRGGNWFKEFYAYGFDDTL 205
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE- 304
+W R D + E + R E F + F N I+
Sbjct: 206 PNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFNAIDHV 263
Query: 305 ----ALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR-----RGPVIEHLFDWSKTDLRT 355
+ D ++G D+ V+ ++ + + ++
Sbjct: 264 KDLKGMRHFFKDDEAFETLLGIDVG-YRDPTAVLTIKYHYDTDTYYVLEEYQQAEKTTAQ 322
Query: 356 TNNKISGLVEKYRPDAIIIDA 376
I +++Y+ D I +D+
Sbjct: 323 HAAYIQHCIDRYKVDRIFVDS 343
>gi|326633035|ref|YP_004306624.1| terminase large subunit [Enterobacteria phage SPC35]
gi|321272229|gb|ADW80121.1| terminase large subunit [Enterobacteria phage SPC35]
Length = 438
Score = 86.5 bits (212), Expect = 8e-15, Method: Composition-based stats.
Identities = 44/321 (13%), Positives = 94/321 (29%), Gaps = 38/321 (11%)
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
+P R +GK+ + A+ + +L P + V+ +A + + W+++
Sbjct: 47 NALEDPRHRFVTACVSRRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYSLA-NIGWSQIR 104
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ Y D + +
Sbjct: 105 GLIKK-------------------YGLQTERENAKDKEIELANGSLFKLASAAQADSAVG 145
Query: 190 TYGMAIINDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI-FNKPL 245
II DEA+ + D + + L + N+ +I T +FY F+ L
Sbjct: 146 RSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKALFISTPRGGNWFKEFYAYGFDDTL 205
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE- 304
+W R D + E + R E F + F N I+
Sbjct: 206 PNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFNAIDHV 263
Query: 305 ----ALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR-----RGPVIEHLFDWSKTDLRT 355
+ D ++G D+ V+ ++ + + ++
Sbjct: 264 KDLKGMRHFFKDDEAFETLLGIDVG-YRDPTAVLTIKYHYDTDTYYVLEEYQQAEKTTAQ 322
Query: 356 TNNKISGLVEKYRPDAIIIDA 376
I +++Y+ D + +D+
Sbjct: 323 HAAYIQHCIDRYKVDRVFVDS 343
>gi|18138498|ref|NP_542602.1| probable terminase [Halorubrum phage HF2]
gi|32453919|ref|NP_861683.1| hypothetical protein HalHV1gp095 [Halovirus HF1]
gi|18000439|gb|AAL55022.1| probable terminase [Halorubrum phage HF2]
gi|32346487|gb|AAO61393.1| hypothetical protein [Halovirus HF1]
Length = 563
Score = 86.5 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 62/492 (12%), Positives = 129/492 (26%), Gaps = 67/492 (13%)
Query: 41 KGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW 100
+ +E + R +Q M +N I GR IG + + +L
Sbjct: 41 ETDEIEPLTLFRPYQPRIMHAYFYGDAKILN----------IYKGRRIGVSYIIGICILI 90
Query: 101 LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHP------APWY 154
+P L+ ++ Q + + + + + + + +
Sbjct: 91 EALLKPDTFYPILSKTKGQSNSRISDIKTLIKNAKIDIPLEKDNQDEIVLPNGSRIKAYT 150
Query: 155 SDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH-----NTYGMAIINDEASGTPDVINL 209
D K + E++ T + + M ++ + + ++
Sbjct: 151 GDPDSARGEDPPKTVFIDEMAFLEDQSATLDAYLPTISLGSSQMVQVSTPKAQNDEFMDA 210
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI 269
G RN + + + + + D + + D +
Sbjct: 211 NERGTPDGRNDFGILALKQPTFKNADEIQTDVSLFEQDVEPVRGDFDLM---------AA 261
Query: 270 IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE---------PCPDPYAPLIM 320
+ D + E + P D F + IE+A+ R D L+M
Sbjct: 262 ETQRASDPNGFAQEYLCR-PVSDEYRFFSMPTIEDAMGRGAADDYSYGLRRYDTPNTLVM 320
Query: 321 GCDIAEEGGDNTVVVL-----RRGPVIEHLFDWS-----------KTDLRTTNNKISGLV 364
G DI D +VV RR + + + + +IS +
Sbjct: 321 GVDIGFNSDDTAIVVFEHEGPRRYLRYHEVVNDRVLEQAGITPSSRQNPAAVAERISQVY 380
Query: 365 EKYRPDAIIIDANNTGARTCDYLEML-GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
+I+D G D + G + + N LH +
Sbjct: 381 NGMGVSNVIMDMTGVGQGFHDEVRRRIGRGYTGFNFSAKDKVEKMMGNMNYALHNDL--- 437
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKR--VKGAKSTDYSDGLMYTFAENPP 481
L L + L ++ + + K G D + +
Sbjct: 438 ---VWLPEDDSLREQLGAIVKQQKEDWQKPKFTGKEHAPDGKD--DLAMATVLAAFPPNF 492
Query: 482 RSDMDFGRCPSY 493
+SD
Sbjct: 493 KSDKSRNLQQRE 504
>gi|310722477|ref|YP_003969300.1| terminase DNA packaging enzyme large subunit [Aeromonas phage
phiAS5]
gi|306021320|gb|ADM79854.1| terminase DNA packaging enzyme large subunit [Aeromonas phage
phiAS5]
Length = 633
Score = 86.5 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 66/461 (14%), Positives = 133/461 (28%), Gaps = 70/461 (15%)
Query: 14 KLFDLMWSD--EIKLSFSNFVLHFF-----PWGEKGTPLEGFSAPRSWQLEFMEVVDAHC 66
K M + + F ++ WG L R +Q + + ++
Sbjct: 125 KWTKEMVEEWKRCRDDIVYFAENYCSIVHIDWGVIKVQL------RDYQKDMLRIMSTER 178
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
++ N P R +GKTT A + + +V LA+ + L
Sbjct: 179 MSMHNLP------------RQLGKTTATAIFLTHFVVFNEAKAVGVLAHKGDMSREVLER 226
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
+ + LLP+ P + ++ +++ +
Sbjct: 227 T-KQCIELLPD-----------FLQPGIVEWNKGNIELENGCSIGAY-------ASSPDA 267
Query: 187 HHNTYGMAIINDEASGTP--DVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNK 243
I DE + + IL + + R + T N +E+
Sbjct: 268 VRGNSFALIYVDECAFIEGFEDTWKAILPVISSGRKSRIILTSTPNGINHWYDLWEVSLN 327
Query: 244 PLDDWKRFQIDTRTVEG--------IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+K + TV+ D F + R E C F
Sbjct: 328 SDKGFKPYTTTWITVKERLYNGADKYDDGFEWATKQINSSSIEAFRQEHCCVFMGTAGTL 387
Query: 296 FIPLNII---------EEALNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVI--- 342
+ E+ P+P I D AE G D + + + V
Sbjct: 388 INGFKLTKMIWDEVNNEDGFYCLEKPEPDHKYIATVDPAEGRGQDYSTMQIIDVTVYPYR 447
Query: 343 -EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
++ +K + I +Y + ++ N+ G L + + ++
Sbjct: 448 QVAVYHSNKISPLLLPSVIMKYAMEYNNAWVYVELNSIGNMVAKSLFIDLEYENVIVDSS 507
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLI-NHSGLIQNLKS 441
+ + ++ + + + D +E LI H G IQ ++
Sbjct: 508 KDLGMKQTKTTKAVGCSTLKDLIEKDKLIVKHKGTIQEFRT 548
>gi|295111846|emb|CBL28596.1| Mu-like prophage FluMu protein gp28 [Synergistetes bacterium SGP1]
Length = 532
Score = 86.5 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 62/461 (13%), Positives = 135/461 (29%), Gaps = 65/461 (14%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ ++ + A+ + + + + F+ + + R IG + L VL R ++ A
Sbjct: 123 EKALDKLYAYQRSFLLDDSR--FRVCLKS-RQIGFSFLLGLEVLLGAIERGDNQIVISA- 178
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
S+ Q + KW L D +
Sbjct: 179 SQDQ-SDIVRNYAVKWCKDL-----------------------DVDYLEDGGNIIFPGGA 214
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDV-INLGILGFLTERNANRFWIMTSNPRRLS 234
+ P G +++ A + + T + +TS P +
Sbjct: 215 IAYFLPCNPRTVQGYTGDVYLDEFAWHMRGRLMWQAAVPAATTKGKR--LTVTSTPYTET 272
Query: 235 GKFYEIFNKPLD--DWKRFQIDTRT-VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
F EI P + R + V+ E + + D+ +F
Sbjct: 273 DMFGEIVTNPDKYPRFSRHTVTIYDAVKDGHQVDIEELRGLF--DAITFAQAYECRFFAD 330
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV-------IEH 344
+ + + L+ + A + G DI +V+ + V + H
Sbjct: 331 -ELCLLQPDEVRAVLDDDCLRHVSAWVNGGVDIGRTKDVTAIVLAEQLQVEAEKLVFVRH 389
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
+ ++ + ++GLVE ++ + +DA G + + ++ L V
Sbjct: 390 METLARMAFDGQRSHMAGLVEGWKIRRLAMDATGIGMQLSEDMQRL---------YPGKV 440
Query: 405 DLEFCRN-RRTELHVKMADWLEF--ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVK 461
+ ++ E+ + + E + N L+ L ++K ++ R +
Sbjct: 441 ERVHFTREKKEEMALSVKKLFETQRIRIPNDRDLVMQLHAIKRKPTEKG--FTYDADRNE 498
Query: 462 GAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEGVDLLI 502
K D L E GR ++
Sbjct: 499 QIKHADLFWALALAVKEF-------GGRRRVLTARNFKVVG 532
>gi|323161577|gb|EFZ47464.1| terminase, ATPase subunit [Escherichia coli E128010]
Length = 374
Score = 86.5 bits (212), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/367 (10%), Positives = 88/367 (23%), Gaps = 47/367 (12%)
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
+ + + R + + + + ++ T +
Sbjct: 27 AQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGLRRTYFSTPSTETHEAYAYW------ 80
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDWKRFQIDTRTV--EGIDPSFHEGIIA 271
S+ R+ ++ + D R + V G + + I
Sbjct: 81 -NGDRWNEKKASHKRQRFSVDWKTLHNGLICPDRTWRQIVTLEDVVNHGWKHTDIDEIRD 139
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIEEALNREPCPDP-------YAPLIMG 321
D +F ++ +F I + + + P P+ +G
Sbjct: 140 ENTEDE--FLNLYMCEFVREGESAFNLNILIGCGVDGYDDWKDWKPFAPRPMGNRPVWIG 197
Query: 322 CDIAEEGGD---------NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
D G+ V + I +Y + I
Sbjct: 198 YDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRRVQGLEFEEQARVIEEFTYRYNVEHI 257
Query: 373 IIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN 431
ID G ++ + +R+ L +KM +
Sbjct: 258 GIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--------KRS-LVLKMLQIMRAGRWEY 308
Query: 432 HS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L+ +++ G + E+ R +G D + M P + +
Sbjct: 309 DRAERELVAAFNAVRKVK-TPGGFITYETDRARGISHGDLAWATMLAVINEPIGGEGENE 367
Query: 489 RCPSYQY 495
R ++
Sbjct: 368 RFTVMEF 374
>gi|146310462|ref|YP_001175536.1| hypothetical protein Ent638_0800 [Enterobacter sp. 638]
gi|145317338|gb|ABP59485.1| conserved hypothetical protein [Enterobacter sp. 638]
Length = 445
Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 54/419 (12%), Positives = 112/419 (26%), Gaps = 39/419 (9%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
+ + N E L ++ WG P + +
Sbjct: 26 QRIRQNSEMLPALKQFYRTNP--------AQFIIDWGMTTDPRNLDYGLPATIPFLLFPR 77
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
+N + + + G R +G + + L L + + + E + +
Sbjct: 78 QEEWINWIMDRRSSLEHGLTEKSREMGLSWTSIGLACSLCLFNKEMVIGFGSRKEEYVDS 137
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
T + W + F W + ++ + + + +
Sbjct: 138 TGDPKALFWKAR-----KFVETLPVEFRGSWDEKKHAPYMRVEFPDTGAVIKGEAGDNIG 192
Query: 183 TFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
DEA+ L I L+ R I S+ +S F + +
Sbjct: 193 -----RGDRTTLYFVDEAAFL--QRPLLIDAALS--QTTRCRIDLSSVNGMSNPFAQKRH 243
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
F R+ D ++ + + + E+ + IP +
Sbjct: 244 --SGKIPVFTFHWRSDPRKDNEWYRKECEKID-NPVIVAQELDLNYQASAEGILIPSEWV 300
Query: 303 EEALNREPC--PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
+ A++ P + DIA+EG D R G +++ + +WS + +
Sbjct: 301 QAAVDAHIKLGIQPSGQRLGSMDIADEGKDKNGFSSRYGFLLQSVHEWSGEGSDIYASVV 360
Query: 361 SG--LVEKYRPDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRAVDLE 407
+ Y D D + GA ++ G D E
Sbjct: 361 KSFGYCDDYGLDEFRFDEDGLGAGARGDARVINELRQAEGRGTIAATPFRGSGSVFDPE 419
>gi|218695492|ref|YP_002403159.1| Terminase, ATPase subunit (GpP) [Escherichia coli 55989]
gi|218352224|emb|CAU97972.1| Terminase, ATPase subunit (GpP) [Escherichia coli 55989]
Length = 583
Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/452 (11%), Positives = 114/452 (25%), Gaps = 57/452 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPGIS-VICLANSETQL---KTTLWAEVSKWLS 133
I R IG T A L + +P I L+ S Q K+ + ++
Sbjct: 151 ILKSRQIGATWYFAQEALLMALRDDVAQPYQRNQIFLSASRRQAFQFKSIIQKAAAEVDV 210
Query: 134 LLPNKHWFEMQSLSL--HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L + + + + + + + R + + +
Sbjct: 211 ELKGGDKIILSNGAELHFLGTSAASAQSYTGNFYFDEFFWVSRFAELRKVAGAMATLSGL 270
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDW 248
+ ++ T + ++ R+ ++ + D
Sbjct: 271 RRTYFSTPSTETHEAYAYW-------NGDRWNEKKATHKRQRFSVDWKTLHNGLICPDRT 323
Query: 249 KRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIE 303
R + V G + + I D +F ++ +F I +
Sbjct: 324 WRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGV 381
Query: 304 EALNREPCPDP-------YAPLIMGCDIAEEGGD---------NTVVVLRRGPVIEHLFD 347
+ + P P+ +G D G+ V
Sbjct: 382 DGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRR 441
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ I +Y + I ID G ++ +
Sbjct: 442 VQGLEFEEQARVIEDFTYRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS--- 498
Query: 407 EFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+R+ L +KM + L+ +++ G + E+ R +G+
Sbjct: 499 -----KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGS 551
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 552 SHGDLAWATMLAVINEPIGGEGENERFTVMEF 583
>gi|326387547|ref|ZP_08209153.1| hypothetical protein Y88_0459 [Novosphingobium nitrogenifigens DSM
19370]
gi|326207593|gb|EGD58404.1| hypothetical protein Y88_0459 [Novosphingobium nitrogenifigens DSM
19370]
Length = 656
Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 55/454 (12%), Positives = 119/454 (26%), Gaps = 62/454 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL------ 135
I R IG T A L L++ G + I L+ S Q + +W+ +
Sbjct: 217 IVKSRQIGATWYFARERL-LVALETGKNQIFLSASRAQA-NIFRTYIVQWVQKVCGVLLK 274
Query: 136 -----PNKHWFEMQSLSLHPAP---WYSDVLHCSLGIDSKHYSTMCRTY-----SEERPD 182
+ E P ++ + + + +
Sbjct: 275 GEPIVIQRGEEEGGENGERLDPVELYFLGTNYRTAQGYHGDVIVDECFWIYGFEELFKVA 334
Query: 183 TFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
+ + H Y + + ++ + + R A + + +
Sbjct: 335 SAMATHKQYTRTLFSTPSTLDHEAYGMWSGDRFNRRRAKADKVRI---DIANEHLRDGSL 391
Query: 243 KPLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
P W+ I +G+D + + G+D F F +
Sbjct: 392 GPDGVWRQVVTIFDAIAKGLDLVDVDELQRENGIDE--FDNLFRCIFLDDSQSMFPFALM 449
Query: 302 IEEALNREPCPDPYAPLIMGCDIAE--------------EGGDNTVVVL------RRGPV 341
++ Y P + E D +V +
Sbjct: 450 RRCMVDAWEVWQDYQPYALRPYAGEVWLGYDPNASEDNPTSDDAALVAIAPPSAIGGKFR 509
Query: 342 IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
I D + I + KYR I ID G + +
Sbjct: 510 ILEKKRLKGLDFAGQADAIREMAGKYRVTKIGIDTTGAGKAVHQLVTKWFPLATAYMYSV 569
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESK 458
++++ +K + + L ++ + +++ V + G ++ +
Sbjct: 570 AT---------KSQMVLKAKNVIAAGRLEFESGWHDMLSSFMAIRP-KVTSQG-ISYVAG 618
Query: 459 RVKGAKSTDYSDGLMYTFA-ENPPRSDMDFGRCP 491
R G D + +M+ A E ++ G
Sbjct: 619 RGGGVGHADLAWAVMHALAFEPLDITEPASGGSR 652
>gi|9632853|ref|NP_049777.1| gp17'A unknown function [Enterobacteria phage T4]
gi|5354477|gb|AAD42684.1|AF158101_271 gp17'A unknown function [Enterobacteria phage T4]
gi|299780522|gb|ADJ39884.1| gp17'A [Enterobacteria phage T4T]
Length = 523
Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/462 (12%), Positives = 133/462 (28%), Gaps = 63/462 (13%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M + + + F + R +Q + ++++ + +
Sbjct: 10 NIKTQWTREMVEEWKKCRDDIVYFAETYCA-ITHIDYGVIKVQLRDYQRDMLKIMSSKRM 68
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N R +GKTT+ A + + +V LA+ + L
Sbjct: 69 TVCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 115
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 116 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 157
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I DE + P+ L I + + R + T N + +
Sbjct: 158 RGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 217
Query: 245 LDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
++ + +V + D + I G R E F + +
Sbjct: 218 KSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAF-EGTSGTL 276
Query: 297 IP------LNIIE-----EALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVIE 343
I ++ IE ++ P+P I D + + ++ +
Sbjct: 277 ISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVW 336
Query: 344 HLFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
++ + + + + +Y + I+ N+TG L M + +
Sbjct: 337 EQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDS 396
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI H IQ ++
Sbjct: 397 YTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRT 438
>gi|297566322|ref|YP_003685294.1| hypothetical protein Mesil_1911 [Meiothermus silvanus DSM 9946]
gi|296850771|gb|ADH63786.1| protein of unknown function DUF264 [Meiothermus silvanus DSM 9946]
Length = 427
Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 55/395 (13%), Positives = 116/395 (29%), Gaps = 37/395 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R +GK+ + + P + L+ E Q K
Sbjct: 29 SRQVGKSFAASLEAVLDCVAHPRSLWVFLSRGERQSKE--------LAEKAQRHLEAIQV 80
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA-SGT 203
++ P+ ++ + + + P G ++++ A
Sbjct: 81 VAEMYDEPFDAESTQTVIRLPNGSRIIS-------LPANPDTARGYSGNVLLDEFALHKD 133
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL--DDWKRFQIDTRTVEGI 261
I + +T R+ + S P+ GKFYEI+ D W R ++D
Sbjct: 134 SREIWGALYPTIT-RSKRYRLRVLSTPKGQQGKFYEIWQPEPGGDLWSRHRVDIYDAVQQ 192
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP--YAPLI 319
+ + D + + E +F + P +I + + D L
Sbjct: 193 GLEVDPEELRKGLKDPVLWQQEYLLEFVDEASAWL-PYELITSCESSQARTDGALEGDLY 251
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP-DAIIIDANN 378
+G DI + + V R + + + L IDA+
Sbjct: 252 LGMDIGRHRDLSVIWVAERVGDVLWTRRVIWLERTPFATQREVLYSLLPQVRRACIDASG 311
Query: 379 TGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF--ASLINHSGL 435
G + + + G V V+ + + +L V + E + +
Sbjct: 312 LGMQLAEEAQSRFGSRVEPVMFTRA---------VKEDLAVTLRRKFEDRLIRIPPDDRI 362
Query: 436 IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD 470
++L +++ I + G + ++ R D
Sbjct: 363 RESLHAVRR-ITTSAGHIRFDADRDDAG-HADEFW 395
>gi|16082806|ref|NP_395360.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
gi|31795361|ref|NP_857813.1| hypothetical protein Y1030 [Yersinia pestis KIM]
gi|40787951|ref|NP_857660.2| hypothetical protein YPKMT021 [Yersinia pestis KIM]
gi|45478613|ref|NP_995469.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
str. 91001]
gi|52788073|ref|YP_093901.1| hypothetical protein pG8786_021 [Yersinia pestis]
gi|108793557|ref|YP_636707.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
gi|108793757|ref|YP_636595.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
gi|145597216|ref|YP_001154679.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
gi|149192775|ref|YP_001294006.1| hypothetical protein YPE_4292 [Yersinia pestis CA88-4125]
gi|162417876|ref|YP_001604588.1| hypothetical protein YpAngola_0076 [Yersinia pestis Angola]
gi|165939469|ref|ZP_02228016.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166214433|ref|ZP_02240468.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167402343|ref|ZP_02307808.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167422791|ref|ZP_02314544.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167466683|ref|ZP_02331387.1| hypothetical protein YpesF_02065 [Yersinia pestis FV-1]
gi|229896952|ref|ZP_04512111.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
gi|229897756|ref|ZP_04512911.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229900293|ref|ZP_04515428.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904817|ref|ZP_04519927.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
gi|270491004|ref|ZP_06208077.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
D27]
gi|294502015|ref|YP_003565752.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
gi|3883031|gb|AAC82691.1| unknown [Yersinia pestis KIM 10]
gi|5834709|emb|CAB55206.1| hypothetical protein YPMT1.24c [Yersinia pestis CO92]
gi|45357266|gb|AAS58660.1| hypothetical protein YP_pMT025 [Yersinia pestis biovar Microtus
str. 91001]
gi|52538002|emb|CAG27427.1| hypothetical protein [Yersinia pestis]
gi|108777821|gb|ABG20339.1| hypothetical protein YPN_MT0025 [Yersinia pestis Nepal516]
gi|108782104|gb|ABG16161.1| hypothetical protein YPA_MT0025 [Yersinia pestis Antiqua]
gi|145212984|gb|ABP42389.1| hypothetical protein YPDSF_4052 [Yersinia pestis Pestoides F]
gi|148872433|gb|ABR14922.1| hypothetical protein YPMT1.24c [Yersinia pestis CA88-4125]
gi|162350848|gb|ABX84797.1| conserved hypothetical protein [Yersinia pestis Angola]
gi|165912657|gb|EDR31287.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. IP275]
gi|166204381|gb|EDR48861.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166958284|gb|EDR55305.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048235|gb|EDR59643.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|229678132|gb|EEO74238.1| hypothetical protein YP516_4657 [Yersinia pestis Nepal516]
gi|229686652|gb|EEO78733.1| hypothetical protein YPF_4819 [Yersinia pestis biovar Orientalis
str. India 195]
gi|229693337|gb|EEO83387.1| hypothetical protein YPH_4790 [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229699988|gb|EEO88028.1| hypothetical protein YPS_4795 [Yersinia pestis Pestoides A]
gi|262363909|gb|ACY60628.1| hypothetical protein YPD4_pMT0023 [Yersinia pestis D106004]
gi|262364065|gb|ACY64401.1| hypothetical protein YPD8_pMT0023 [Yersinia pestis D182038]
gi|270334985|gb|EFA45763.1| phage terminase, large subunit, PBSX family [Yersinia pestis KIM
D27]
gi|294352486|gb|ADE66542.1| hypothetical protein YPZ3_pMT0023 [Yersinia pestis Z176003]
gi|320017547|gb|ADW01117.1| hypothetical protein YPC_4788 [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 418
Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/432 (13%), Positives = 107/432 (24%), Gaps = 58/432 (13%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ +V H +P FK + AGR GK+ L+ ++ + V +A +
Sbjct: 7 LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ LW ++ + L + + +
Sbjct: 66 MARQILWDDLQEVLPRKWVRKKNDTTMT---------------------IVLKNGSEIAL 104
Query: 179 ERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ D ++ DE PD + L+ I T K
Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKL 164
Query: 238 YEIFNKP----LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ I WK +Q T + + E D E F
Sbjct: 165 WTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDM--DPKSFAQEYLASFENMSG 222
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD--NTVVVLRRGPVIEHLFDWSKT 351
+ P + N P + P + + D ++V++ + D
Sbjct: 223 RVYYPFD-----RNVHVKPLQFNPKLPIWVGQDFNIDPMSSVILQPQPNGELWAVDEVVL 277
Query: 352 DLRTTNNKISGLVEKYRPDAIII----DANNT------GARTCDYLEMLGY-HVYRVLGQ 400
T L ++ + D G D + G+ V
Sbjct: 278 FSSNTAEVCDELERRFWRWKSQVTIFPDPAGAYRQHARGESDVDIFKEKGFLRVDYPKKH 337
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRV 460
D NR + L + SL+ I + +
Sbjct: 338 PPIADRVNAVNR------MLMSASGETRLYIDPKCKHLIDSLEKVIYKPGSR---DMDKT 388
Query: 461 KGAKSTDYSDGL 472
G + +D L
Sbjct: 389 GGIEH--SADAL 398
>gi|116326387|ref|YP_803107.1| terminase subunit nuclease and ATPase [Enterobacteria phage RB32]
gi|115343980|gb|ABI94989.1| terminase subunit nuclease and ATPase [Enterobacteria phage RB32]
Length = 610
Score = 86.1 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 130/461 (28%), Gaps = 61/461 (13%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M + + + F + R +Q + ++++ + +
Sbjct: 97 NIKTQWTREMVEEWKKCRDDIVYFAETYCA-ITHIDYGVIKVQLRDYQRDMLKIMSSKRM 155
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N R +GKTT+ A + + +V LA+ + L
Sbjct: 156 TVCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 202
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 203 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 244
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I DE + P+ L I + + R + T N + +
Sbjct: 245 RGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 304
Query: 245 LDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS- 295
++ + +V + D + I G R E F
Sbjct: 305 KSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTSGTLI 364
Query: 296 ---------FIPLNIIEEALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVIEH 344
FI + + +R P+P I D + + ++ +
Sbjct: 365 SGMKLAIMDFIEVTPDDHGFHRFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWE 424
Query: 345 LFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
++ + + + + +Y + I+ N+TG L M + +
Sbjct: 425 QVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSY 484
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI H IQ ++
Sbjct: 485 TDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRT 525
>gi|291336431|gb|ADD95986.1| hypothetical protein Ddes_0719 [uncultured organism
MedDCM-OCT-S04-C1073]
Length = 311
Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/290 (12%), Positives = 78/290 (26%), Gaps = 33/290 (11%)
Query: 102 MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
M+ + +A + Q K+ W + ++ + +PN + E + P
Sbjct: 1 MTKKKNPRYAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPN---------- 50
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNA 220
+ + G Y + DE + + I L++R
Sbjct: 51 -----------GSRITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALSDRKG 99
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+I T + +DW ++ + +DP E G
Sbjct: 100 YCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGE--KKY 157
Query: 281 RVEVCGQFPQQDIDSFIPLNII---EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
E + + I ++ DP P+ D+ ++++ +
Sbjct: 158 LQEFECDWIANIEGAIYGEEIAKIEDKNQIARVPYDPTLPVSTAWDLG-VADHSSIIFFQ 216
Query: 338 R---GPVIEHLFDWSKTDLRTTNNKISG--LVEKYRPDAIIIDANNTGAR 382
+ G I + L + + K ID G
Sbjct: 217 QKGTGVQIIDYHEERGHGLPHYIQMLEEKPYIYKDHFAPHDIDVQEFGNG 266
>gi|18466735|ref|NP_569542.1| hypothetical protein HCM2.0070c [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16506051|emb|CAD09937.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
Length = 418
Score = 85.7 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 58/432 (13%), Positives = 107/432 (24%), Gaps = 58/432 (13%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ +V H +P FK + AGR GK+ L+ ++ + V +A +
Sbjct: 7 LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ LW ++ + L + + +
Sbjct: 66 MARQILWDDLQEVLPRKWVRKKNDTTMT---------------------IVLKNGSEIAL 104
Query: 179 ERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ D ++ DE PD + L+ I T K
Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKL 164
Query: 238 YEIFNKP----LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ I WK +Q T + + E D E F
Sbjct: 165 WTIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDM--DPKSFAQEYLASFENMSG 222
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD--NTVVVLRRGPVIEHLFDWSKT 351
+ P + N P + P + + D ++V++ + D
Sbjct: 223 RVYYPFD-----RNVHVKPLQFNPKLPIWVGQDFNIDPMSSVILQPQPNGELWAVDEVVL 277
Query: 352 DLRTTNNKISGLVEKYRPDAIII----DANNT------GARTCDYLEMLGY-HVYRVLGQ 400
T L ++ + D G D + G+ V
Sbjct: 278 FSSNTAEVCDELERRFWRWKSQVTIFPDPAGAYRQHARGESDVDIFKEKGFLRVDYPKKH 337
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRV 460
D NR + L + SL+ I + +
Sbjct: 338 PPIADRVNAVNR------MLMSASGETRLYIDPKCKHLIDSLEKVIYKPGSR---DMDKT 388
Query: 461 KGAKSTDYSDGL 472
G + +D L
Sbjct: 389 GGIEH--SADAL 398
>gi|293411885|ref|ZP_06654610.1| predicted protein [Escherichia coli B354]
gi|220980013|emb|CAP72205.1| Hypothetical protein [Escherichia coli LF82]
gi|291469440|gb|EFF11929.1| predicted protein [Escherichia coli B354]
gi|323934319|gb|EGB30739.1| PBSX family protein phage terminase [Escherichia coli E1520]
Length = 418
Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 58/432 (13%), Positives = 107/432 (24%), Gaps = 58/432 (13%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ +V H +P FK + AGR GK+ L+ ++ + V +A +
Sbjct: 7 LSLVQLHSGQMKVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ LW ++ + L + + +
Sbjct: 66 MARQILWDDLQEVLPRKWVRKKNDTTMT---------------------IVLKNGSEIAL 104
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ D ++ DE D + L+ I T K
Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKADTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKL 164
Query: 238 YEIFN----KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ I + WK +Q T + + E D E F
Sbjct: 165 WTIGQNVELQRKGQWKSWQFVTADSPFVPTAEIEAAKNDM--DPKSFAQEYLASFENMSG 222
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD--NTVVVLRRGPVIEHLFDWSKT 351
+ P + N P + P + + D ++V++ + D
Sbjct: 223 RVYYPFD-----RNVHVKPLQFNPRLPIWVGQDFNIDPMSSVILQPQPNGELWAIDELVL 277
Query: 352 DLRTTNNKISGLVEKYRPDAIII----DANNT------GARTCDYLEMLGY-HVYRVLGQ 400
T L ++ I D G D + G+ V
Sbjct: 278 FSSNTAEVCDELERRFWRWKSQITVFPDPAGAYRQHARGESDVDIFKEKGFLRVDYSKKH 337
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRV 460
D NR + L + SL+ I + +
Sbjct: 338 PPIADRVNAVNR------MLMTASGDIRLYIDPKCKHLIDSLEKVIYKPGTR---DMDKT 388
Query: 461 KGAKSTDYSDGL 472
G + +D L
Sbjct: 389 GGIEH--SADAL 398
>gi|92113525|ref|YP_573453.1| hypothetical protein Csal_1399 [Chromohalobacter salexigens DSM
3043]
gi|91796615|gb|ABE58754.1| protein of unknown function DUF264 [Chromohalobacter salexigens DSM
3043]
Length = 594
Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/447 (10%), Positives = 110/447 (24%), Gaps = 42/447 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS-ETQ 119
+ + E + + + R IG T A + + A+ +
Sbjct: 145 SLFDYQRAWYRAGQHERIRNLLKS-RQIGATWYFAREAIADAVETGKNKIFMSASKAQAH 203
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS---KHYSTMCRTY 176
+ + K + + K + + ++ Y +
Sbjct: 204 IFKHYIVQFVKEATGVELKGDPIVLANGAELHFLGTNAKTAQGYHGDTYLDEYFWINGFE 263
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + + H + + +S + +R +
Sbjct: 264 QFRKVTSGMAMHKKWKQTYFSTPSSVAHEAYPFWTGERFNKRQKKADRVSIDVSHA---A 320
Query: 237 FYEIFNKPLDDWKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
P W++ I+ G D + + Y + + +F +
Sbjct: 321 LKGGARGPDGQWRQIVTIEDAIAGGCDLFDLDQLRLEYSDEE--FANLLMCEFVDDSQSA 378
Query: 296 FIPLNIIEEALNREPCPDP----------YAPLIMGCDIA--EEGGDNTVVVL------- 336
F + + ++ P+ +G D A GD +V+
Sbjct: 379 FPMMTMQRCMVDSWDIWRDWKPFAARPFGDKPVWLGYDPAGDNLDGDGAGLVVLAPAKNR 438
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
I D I + +Y I ID N G + V R
Sbjct: 439 NDRHRILEKHRIKGQDYEEQAGFIEQVTRRYNVQFIGIDINGMGEAVAQLVAKFFPRVTR 498
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGEL 453
+ + L + +E L S + Q+ +++ + + +
Sbjct: 499 YRYTPDS---------KAALVRQAQHIIERGRLEFDSRDVIIAQSFTAIRRELTASGRQF 549
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENP 480
+ R D + M+ P
Sbjct: 550 TFTAGRNAQTGHADLAWATMHALNNEP 576
>gi|238695317|ref|YP_002922510.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage JS10]
gi|220029453|gb|ACL78387.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage JS10]
Length = 611
Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 63/462 (13%), Positives = 133/462 (28%), Gaps = 63/462 (13%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M S+ + + F + R +Q + ++++ + +
Sbjct: 97 NIKTQWTREMVSEWKKCRDDIVYFAETYCA-ITHIDYGTIKVQLRDYQRDMLKIMSKNRM 155
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
+ N R +GKTT+ A + + +V LA+ + L
Sbjct: 156 TTCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 202
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 203 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 244
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I DE + P+ L I + + R + T N + +
Sbjct: 245 RGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 304
Query: 245 LDDWKRFQIDT--------RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + + D + R E C +F Q +
Sbjct: 305 KSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAEF-QGTSGTL 363
Query: 297 IP------LNIIEEA-----LNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVIEH 344
I ++ E R PDP I D +E G D + + E
Sbjct: 364 ISGMKLAIMDWKEVIPENGYFYRFHEPDPTHKYIASLDCSEGRGQDYHALHIIDVTTDEW 423
Query: 345 ----LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
+ ++ + + + +Y + I+ N+TG L M + +
Sbjct: 424 EQVAVLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSLYMDLEYENVICDS 483
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKS 441
+ + ++ R + + D +E L +NH I ++
Sbjct: 484 MQDLGMKQTRRTKPVGCSTLKDLIEKDKLKLNHKQTIMEFRT 525
>gi|89071120|ref|ZP_01158320.1| Putative large terminase [Oceanicola granulosus HTCC2516]
gi|89043331|gb|EAR49553.1| Putative large terminase [Oceanicola granulosus HTCC2516]
Length = 444
Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 61/434 (14%), Positives = 119/434 (27%), Gaps = 65/434 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM----STRPGI--SVICLANSET 118
L+ P+ + I GRG GKT A V + +T PG V + +
Sbjct: 41 WALDHQLPPSGDWRSWVILGGRGAGKTRAGAEWVRAQVEGPRATDPGRARRVALVGETID 100
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
Q + + S L+ P E + W +
Sbjct: 101 QAREVMVFGDSGLLACAPPDRRPEWIAGR-RLLVWPNGAQ-----------------AQL 142
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
A DE + + + L + R + T+
Sbjct: 143 FSAHDPEALRGPQFDAAWVDELAKWKKAEEAWDMLQLALRLGDDPRCCVTTTP---RPTA 199
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + + +F + RY S + R E+ G + +
Sbjct: 200 LMRALLERDGTARTHAPTEANAANLARAFLAEVRRRYA-GSPLGRQELDGVMLSEIEGAL 258
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL----------RRGPVIEHLF 346
I A N + PD + +++ D + GGD +V+ +
Sbjct: 259 WSAGAI-AAANCDVVPDLHR-VVVAVDPSAGGGDVCGIVVAGACYDGGADNWRAWVLEDA 316
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ + I+ E+++ D I+ + N G L + V +
Sbjct: 317 SVAGSSTTWARAAIA-AYERHQADRIVAEVNQGGDMVAAMLRQVAPTVPYKGVRAMRGKA 375
Query: 407 EFCRNRRTELHVKMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAK 464
R E + + + + L + + + +G
Sbjct: 376 A-----RAEPVAALYEQGRVRHVRGLGALEDQMALMTHQGY---------------RGRG 415
Query: 465 STDYSDGLMYTFAE 478
S D +D L++ +E
Sbjct: 416 SPDRADALVWALSE 429
>gi|291334706|gb|ADD94352.1| hypothetical protein Ddes_0719 [uncultured phage
MedDCM-OCT-S04-C890]
Length = 311
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/290 (13%), Positives = 77/290 (26%), Gaps = 33/290 (11%)
Query: 102 MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
MS +A + Q K+ W + ++ + +PN + E + P
Sbjct: 1 MSKLKNPRFAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPN---------- 50
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNA 220
+ + G Y + DE + + I L++R
Sbjct: 51 -----------GSRITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALSDRKG 99
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+I T + +DW ++ + +DP E G
Sbjct: 100 YCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGE--KKY 157
Query: 281 RVEVCGQFPQQDIDSFIPLNII---EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
E + + I ++ DP P+ D+ ++++ +
Sbjct: 158 LQEFECDWIANIEGAIYGEEIAKIEDKNQIARVPYDPTLPVSTAWDLG-VADHSSIIFFQ 216
Query: 338 R---GPVIEHLFDWSKTDLRTTNNKISG--LVEKYRPDAIIIDANNTGAR 382
+ G I + L + + K ID G
Sbjct: 217 QKGTGVQIIDYHEERGHGLPHYIQMLEEKPYIYKDHFAPHDIDVQEFGNG 266
>gi|228861099|ref|YP_002854122.1| gp17 terminase subunit [Enterobacteria phage RB51]
gi|227438773|gb|ACP31085.1| gp17 terminase subunit [Enterobacteria phage RB51]
Length = 610
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 130/461 (28%), Gaps = 61/461 (13%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M + + + F + R +Q + ++++ + +
Sbjct: 97 NIKTQWTREMVEEWKKCRDDIVYFAETYCA-ITHIDYGVIKVQLRDYQRDMLKIMSSKRM 155
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N R +GKTT+ A + + +V LA+ + L
Sbjct: 156 TVCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 202
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 203 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 244
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I DE + P+ L I + + R + T N + +
Sbjct: 245 RGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 304
Query: 245 LDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS- 295
++ + +V + D + I G R E F
Sbjct: 305 KSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTSGTLI 364
Query: 296 ---------FIPLNIIEEALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVIEH 344
FI + + +R P+P I D + + ++ +
Sbjct: 365 SGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWE 424
Query: 345 LFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
++ + + + + +Y + I+ N+TG L M + +
Sbjct: 425 QVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSY 484
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI H IQ ++
Sbjct: 485 TDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRT 525
>gi|161622599|ref|YP_001595293.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
phage JS98]
gi|52139922|gb|AAU29292.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
phage JS98]
Length = 611
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 63/462 (13%), Positives = 133/462 (28%), Gaps = 63/462 (13%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M S+ + + F + R +Q + ++++ + +
Sbjct: 97 NIKTQWTREMVSEWKKCRDDIVYFAETYCA-ITHIDYGTIKVQLRDYQRDMLKIMSKNRM 155
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
+ N R +GKTT+ A + + +V LA+ + L
Sbjct: 156 TTCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 202
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 203 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 244
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I DE + P+ L I + + R + T N + +
Sbjct: 245 RGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 304
Query: 245 LDDWKRFQIDT--------RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + + D + R E C +F Q +
Sbjct: 305 KSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAEF-QGTSGTL 363
Query: 297 IP------LNIIEEA-----LNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVIEH 344
I ++ E R PDP I D +E G D + + E
Sbjct: 364 ISGMKLAIMDWKEVIPENGYFYRFHEPDPTHKYIASLDCSEGRGQDYHALHIIDVTTDEW 423
Query: 345 ----LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
+ ++ + + + +Y + I+ N+TG L M + +
Sbjct: 424 EQVAVLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSLYMDLEYENVICDS 483
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKS 441
+ + ++ R + + D +E L +NH I ++
Sbjct: 484 MQDLGMKQTRRTKPVGCSTLKDLIEKDKLKLNHKQTIMEFRT 525
>gi|291336835|gb|ADD96368.1| phage terminase large subunit [uncultured organism
MedDCM-OCT-S09-C20]
Length = 454
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/341 (12%), Positives = 97/341 (28%), Gaps = 28/341 (8%)
Query: 40 EKGTPLEGFSAP---RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
E P+E P + + + + +++ + + G G GK+ A
Sbjct: 14 EPKRPVERAIDPGAADALRAKILADCLPAQREFLDDESHRILSYI--GGFGSGKSFALAA 71
Query: 97 LVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD 156
+++L PG +++ + ++T L + L ++ + + +
Sbjct: 72 KLIFLGLRNPGGTLMACEPTFPMIRTVLVPAIDMALDQWDIEYSYRASPQPEYSINLPTG 131
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
+ + + + A + DE +P L
Sbjct: 132 PVTIYC----------------QSAENYQRIRGQNICAAVWDECDTSPVDTAQKAGEMLL 175
Query: 217 ER---NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY 273
R + S P + D + ++ T+ + F + Y
Sbjct: 176 ARMRTGELNQLAVASTPEGFRWAYRTFVENDGPDKRLIRVRTQDNPHLPADFIPSLERNY 235
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
S + + + G F S P + P + +G D+ G T
Sbjct: 236 --PSQLIQAYLEGHFVNLASCSLYP-EFDRSLNYCDTQPTENDTIWIGVDL-NVGNCVTQ 291
Query: 334 VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
++RRG + D + + + + ++
Sbjct: 292 HLVRRGDEFHFFAEKVYRDTQQIAQGLKEMYPHHFRTGQLV 332
>gi|188026021|ref|ZP_02997754.1| hypothetical protein PROSTU_02527 [Providencia stuartii ATCC 25827]
gi|188021298|gb|EDU59338.1| hypothetical protein PROSTU_02527 [Providencia stuartii ATCC 25827]
Length = 264
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 77/274 (28%), Gaps = 37/274 (13%)
Query: 248 WKRF-QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
W++ I G++ E I D R +F + +F +I +
Sbjct: 2 WRQIVNIHDAIARGLNRVNLEEIKDENPPDD--FRNLYECEFVKTGERAFSYDALINCGV 59
Query: 307 NR-----EPCPDPY-------APLIMGCDIAEEGGD---------NTVVVLRRGPVIEHL 345
+ P PY P+ +G D G + + V I
Sbjct: 60 DGYNSDVWPDWKPYAPRPLGNRPVWVGADPTGTGDNGDGLGLVVASPPAVSGGKFRIIET 119
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+I + ++Y +I ID L + + +L +
Sbjct: 120 IQLRGMAFEKQAEEIKRITQRYNVQSITIDGTGGTGAAVHELVVKFFPAANLLNYSAPLK 179
Query: 406 LEFCRNRRTELHVKMADWLEFASLINHS----GLIQNLKSLKSFIVPNTGELAIESKRVK 461
KM + + LI + ++K +G + ES RV+
Sbjct: 180 RMMIM--------KMLMLIRNGRFEYDAGLHKPLITSFMTIKKVQ-TQSGIITYESSRVR 230
Query: 462 GAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
G D + M F+ S+ ++
Sbjct: 231 GLDHGDLAWAAMNIFSNEAISSETGGAGAQVMEF 264
>gi|9632854|ref|NP_049778.1| gp17'B unknown function [Enterobacteria phage T4]
gi|5354478|gb|AAD42685.1|AF158101_272 gp17'B unknown function [Enterobacteria phage T4]
gi|299780523|gb|ADJ39885.1| gp17'B [Enterobacteria phage T4T]
Length = 505
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 57/447 (12%), Positives = 129/447 (28%), Gaps = 61/447 (13%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ + F + R +Q + ++++ + + N
Sbjct: 7 KCRDDIVYFAETYCA-ITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNL---------- 55
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R +GKTT+ A + + +V LA+ + L + + LLP+
Sbjct: 56 --SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DRTKQAIELLPD----- 107
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
P + S+ +D+ + I DE +
Sbjct: 108 ------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAVRGNSFAMIYIDECAF 154
Query: 203 TPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV- 258
P+ L I + + R + T N + + ++ + +V
Sbjct: 155 IPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVK 214
Query: 259 -------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP------LNIIE-- 303
+ D + I G R E F + + I ++ IE
Sbjct: 215 ERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAF-EGTSGTLISGMKLAVMDFIEVT 273
Query: 304 ---EALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT--- 355
++ P+P I D + + ++ + ++ +
Sbjct: 274 PDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLI 333
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
+ + + +Y + I+ N+TG L M + + + ++ + +
Sbjct: 334 LPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSYTDLGMKQTKRTKAV 393
Query: 416 LHVKMADWLEFASLINHSG-LIQNLKS 441
+ D +E LI H IQ ++
Sbjct: 394 GCSTLKDLIEKDKLIIHHRATIQEFRT 420
>gi|264678567|ref|YP_003278474.1| hypothetical protein CtCNB1_2432 [Comamonas testosteroni CNB-2]
gi|262209080|gb|ACY33178.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 322
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/335 (12%), Positives = 86/335 (25%), Gaps = 40/335 (11%)
Query: 182 DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
+ + H + + + +S T +L + +R
Sbjct: 2 ASGMSSHKKWHITYFSTPSSLTHQAYSLWDGSHIEDRKLKIDISH---------AALAGG 52
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ D R + E + R DV QF + PL++
Sbjct: 53 ARGADGIWRHIVTVEDAERGGCDLFDIANLRLTKSEDVFNNLYMCQFVDD-ALAVFPLSV 111
Query: 302 IEEALNREPC------------PDPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIE 343
++ + P Y + +G D + G +VVL I
Sbjct: 112 LQRCMVDSWDAWRKDFKAFAQRPFGYKRVWVGYDPSLTGDKAALVVLAPPDKPGGKCRIL 171
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
+ D I + + Y + + ID G + V + A
Sbjct: 172 YKVQLHGVDFEAQAAAIKKVCDSYSVEKMTIDITGLGNGVYQLVRKFFPAVRGLHYSLEA 231
Query: 404 VDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRV 460
+T L +K + L + L ++K + + + + R
Sbjct: 232 ---------KTMLVLKAQAVMRAGRLEFDAGDKDLAAAFMAVKRELTASGRSVTYTAGRS 282
Query: 461 KGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M+ + P + +
Sbjct: 283 TQTGHGDLAWAAMHAISHEPLEEGTGLATTQTTSF 317
>gi|330858684|ref|YP_004415059.1| putative terminase subunit nuclease and ATPase [Shigella phage
Shfl2]
gi|291290383|dbj|BAI83178.1| terminase subunit nuclease and ATPase [Enterobacteria phage AR1]
gi|327397618|gb|AEA73120.1| putative terminase subunit nuclease and ATPase [Shigella phage
Shfl2]
Length = 610
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 130/461 (28%), Gaps = 61/461 (13%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M + + + F + R +Q + ++++ + +
Sbjct: 97 NIKTQWTREMVEEWKKCRDDIVYFAETYCA-ITHIDYGVIKVQLRDYQRDMLKIMSSKRM 155
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N R +GKTT+ A + + +V LA+ + L
Sbjct: 156 TVCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 202
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 203 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 244
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I DE + P+ L I + + R + T N + +
Sbjct: 245 RGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 304
Query: 245 LDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS- 295
++ + +V + D + I G R E F
Sbjct: 305 KSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTSGTLI 364
Query: 296 ---------FIPLNIIEEALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVIEH 344
FI + + +R P+P I D + + ++ +
Sbjct: 365 SGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWE 424
Query: 345 LFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
++ + + + + +Y + I+ N+TG L M + +
Sbjct: 425 QVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSY 484
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI H IQ ++
Sbjct: 485 TDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRT 525
>gi|66391670|ref|YP_239195.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
RB43]
gi|62288758|gb|AAX78741.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
RB43]
Length = 609
Score = 85.3 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 62/462 (13%), Positives = 127/462 (27%), Gaps = 65/462 (14%)
Query: 12 EQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNS 69
+ K M + + + F + R +Q E + + + +
Sbjct: 97 QTKWTKEMLMEWVKCRDDIVYFAETYCA-ITHIDYGTIKVQLRDYQKEMLIEMHKNRM-- 153
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
+ R +GKTT+ A + + V LA+ + L
Sbjct: 154 ----------VTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEVL-DRTK 202
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ + LLP+ P + S+ +D+K +
Sbjct: 203 QAIELLPD-----------FLQPGIVEWNKGSIELDNKCKIGAF-------ASSPDAVRG 244
Query: 190 TYGMAIINDEASGTPD--VINLGILGFLTERNANRFWI-MTSNPRRLSGKFYEIFNKPLD 246
I DE + P+ L I ++ ++ I T N + +
Sbjct: 245 NSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKS 304
Query: 247 DWKRFQIDTR----------TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID-- 294
+ + D + G + E C +F +
Sbjct: 305 GFVPYTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLI 364
Query: 295 --------SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVI--- 342
S+I ++ E + P+ + D AE G D + + +
Sbjct: 365 SGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFE 424
Query: 343 -EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQ 400
++ ++T + + + Y I I+ N+TG L L Y
Sbjct: 425 QVAVYHSNRTSHLILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVICDSY 484
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKS 441
+ + + + D +E L IN+ I ++
Sbjct: 485 NDLGMKQT-KRSKAIGCSTLKDLIEKDKLIINNKKTILEFRT 525
>gi|228861479|ref|YP_002854500.1| gp17 terminase subunit [Enterobacteria phage RB14]
gi|227438495|gb|ACP30808.1| gp17 terminase subunit [Enterobacteria phage RB14]
Length = 610
Score = 85.0 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 58/461 (12%), Positives = 130/461 (28%), Gaps = 61/461 (13%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M + + + F + R +Q + ++++ + +
Sbjct: 97 NIKTQWTREMVEEWKKCRDDIVYFAETYCA-ITHIDYGVIKVQLRDYQRDMLKIMSSKRM 155
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N R +GKTT+ A + + +V LA+ + L
Sbjct: 156 TVCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 202
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 203 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 244
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I DE + P+ L I + + R + T N + +
Sbjct: 245 RGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 304
Query: 245 LDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS- 295
++ + +V + D + I G R E F
Sbjct: 305 KSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEGTSGTLI 364
Query: 296 ---------FIPLNIIEEALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVIEH 344
FI + + +R P+P I D + + ++ +
Sbjct: 365 SGMKLAIMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWE 424
Query: 345 LFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
++ + + + + +Y + I+ N+TG L M + +
Sbjct: 425 QVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSY 484
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI H IQ ++
Sbjct: 485 TDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRT 525
>gi|300922509|ref|ZP_07138621.1| phage terminase large subunit [Escherichia coli MS 182-1]
gi|300421167|gb|EFK04478.1| phage terminase large subunit [Escherichia coli MS 182-1]
Length = 240
Score = 85.0 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/230 (10%), Positives = 59/230 (25%), Gaps = 19/230 (8%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK+ A L++ +P ++ E+ +S + +
Sbjct: 21 KGGRGSGKSWAIARLLVEAARRQP-------------VRILCARELQNSISDSVIRLLED 67
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ A + + + + + + G +EA
Sbjct: 68 TIEREGYSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGI-----DICWVEEAEA 122
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
++ + + + W+ + L + P DD ++
Sbjct: 123 VTKESWDILIPTIRKPFSE-IWVSFNPKNILDDTYQRFVVNPPDDICLLTVNYTDNPHFP 181
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ + + R G+ + I +E A +
Sbjct: 182 EVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKREWLEAATDAHKQL 231
>gi|311993449|ref|YP_004010314.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Acj9]
gi|295917406|gb|ADG60077.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Acj9]
Length = 609
Score = 85.0 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 64/446 (14%), Positives = 131/446 (29%), Gaps = 62/446 (13%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ F + R +Q + ++++ + + ++
Sbjct: 113 RCRDDIVYFAETYCA-ITHIDYGTIKVQLRDYQKDMLKIMAEN-------------RMSV 158
Query: 83 SA-GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
S R +GKTT+ A + W ++ LA+ + L + + LLP+
Sbjct: 159 SKLSRQLGKTTVVAIFLAWFACFNKDKNIGILAHKGSMSAEVL-DRTKQAIELLPD---- 213
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
P + S+ +D+ + + I DE +
Sbjct: 214 -------FLQPGIVEWNKGSIELDNGSAISAY-------AASPDAVRGNSFSLIYIDECA 259
Query: 202 GTP--DVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEI-------FNKPLDDWKRF 251
P + L I + + R++ T N + F +W
Sbjct: 260 FIPNFNDAWLAIQPVISSGRHSKIIITTTPNGMNHFYDIWTAAVEGISGFVPYESEWNAV 319
Query: 252 QID-TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF--------PQQDIDSFI---PL 299
+ + D +H G + R E G F + + + P+
Sbjct: 320 KERLYDDKDVFDDGWHFSFTTIGGSSVEQFRQEHVGVFAGGQGTLSLRHETCNLKLETPI 379
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVIEH----LFDWSKTDLR 354
N+ + + PDP I D AE G D + + + + +
Sbjct: 380 NVGDSTFYKYKEPDPTRKYIATLDSAEGRGQDYHCMNIIDVTDEQWEQVAVLHSNTISHL 439
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRT 414
+ I + Y I I+ N+TG L + + + ++ + +
Sbjct: 440 ILPDIILKHLLDYNEAPIYIELNSTGVSIAKTLYSDLEYENVICDSFVDLGMKQTKRTKA 499
Query: 415 ELHVKMADWLE-FASLINHSGLIQNL 439
+ D +E L+NH +Q L
Sbjct: 500 VGCSTLKDLIEKDKLLLNHRKTVQEL 525
>gi|51512091|gb|AAU05290.1| terminase large subunit [Enterobacteria phage T5]
Length = 438
Score = 85.0 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/321 (13%), Positives = 93/321 (28%), Gaps = 38/321 (11%)
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
+P R +GK+ + A+ + +L P + V+ +A + + W+++
Sbjct: 47 NALEDPRHRFVTACVSRRVGKSFI-AYTLGFLKLLEPNVKVLVVAPNYSLA-NIGWSQIR 104
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ Y D + +
Sbjct: 105 GLIKK-------------------YGLQTERENAKDKEIELANGSLFKLASAAQADSAVG 145
Query: 190 TYGMAIINDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI-FNKPL 245
II DEA+ + D + + L + N+ +I T +FY F+ L
Sbjct: 146 RSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKALFISTPRGGNWFKEFYAYGFDDTL 205
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE- 304
+W R D + E + R E F + F N +
Sbjct: 206 PNWVSIHGTYRDNPRADLNDIEEARRTVSK--NYFRQEYEADFSVFEGQIFDTFNATDHV 263
Query: 305 ----ALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR-----RGPVIEHLFDWSKTDLRT 355
+ D ++G D+ V+ ++ + + ++
Sbjct: 264 KDLKGMRHFFKDDEAFETLLGIDVG-YRDPTAVLTIKYHYDTDTYYVLEEYQQAEKTTAQ 322
Query: 356 TNNKISGLVEKYRPDAIIIDA 376
I +++Y+ D I +D+
Sbjct: 323 HAAYIQHCIDRYKVDRIFVDS 343
>gi|299779112|ref|YP_003734306.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
phage IME08]
gi|298105841|gb|ADI55485.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
phage IME08]
Length = 611
Score = 85.0 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 63/462 (13%), Positives = 133/462 (28%), Gaps = 63/462 (13%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M S+ + + F + R +Q + ++++ + +
Sbjct: 97 NIKTQWSREMVSEWKKCRDDIVYFAETYCA-ITHIDYGTIKVQLRDYQRDMLKIMSKNRM 155
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
+ N R +GKTT+ A + + +V LA+ + L
Sbjct: 156 TTCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 202
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 203 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 244
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I DE + P+ L I + + R + T N + +
Sbjct: 245 RGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 304
Query: 245 LDDWKRFQIDT--------RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + + D + R E C +F Q +
Sbjct: 305 KSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAEF-QGTSGTL 363
Query: 297 IP------LNIIEEA-----LNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVIEH 344
I ++ E R PDP I D +E G D + + E
Sbjct: 364 ISGMKLAIMDWKEVIPENGYFYRFHEPDPTHKYIASLDCSEGRGQDYHALHIIDVTTDEW 423
Query: 345 ----LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
+ ++ + + + +Y + I+ N+TG L M + +
Sbjct: 424 EQVAVLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSLYMDLEYENVICDS 483
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKS 441
+ + ++ R + + D +E L +NH I ++
Sbjct: 484 MQDLGMKQTRRTKPVGCSTLKDLIEKDKLKLNHKQTIMEFRT 525
>gi|310815629|ref|YP_003963593.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
gi|308754364|gb|ADO42293.1| Putative large terminase [Ketogulonicigenium vulgare Y25]
Length = 427
Score = 85.0 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 64/418 (15%), Positives = 115/418 (27%), Gaps = 69/418 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS-TRPGI-----SVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V ++ RP V +A + Q + + S ++
Sbjct: 36 IMGGRGAGKTRAGAEWVRSMVEGPRPDTPGRAKRVGLIAQTMDQAREVMVFGDSGLMACC 95
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P E + W + AI
Sbjct: 96 PPARRPEWIAGRA-MLRWPNGAE-----------------ARLFSAHDPEALRGPQFDAI 137
Query: 196 INDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DE + + ++ ++G + T G F
Sbjct: 138 WADEVAKWRLAQEAWDMLVMGLRLGDDPRACLTTTP----RGGPFLRKLLAQSGTVMTHA 193
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ P F + A + S + R E+ G + + P ++++ AL R+
Sbjct: 194 PTRANRANLAPGFVAAVEAMF-EGSHLGRQELDGLLVDEAEGTLWPQHLLDAALQRQAP- 251
Query: 313 DPYAPLIMGCDI---AEEGGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNK 359
P +++ D G D +++ + T +
Sbjct: 252 -PLDRIVVAVDPPVTGHAGSDACGIIVAGVEQRGAPTDWRLWVIEDATVQGASPHTWASA 310
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
++ D ++ + N GA L L H+ RAV + R E
Sbjct: 311 AIAAFHRHGADRLVAEVNQGGALVESVLRQLDPHIPY-----RAVRASKSKGARAEPVST 365
Query: 420 MADWLEFASLINHSGLIQN--LKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + L + L L +L+ F G S D D L++
Sbjct: 366 IYERGRACHLPGLALLEAQMSLMTLQGFT---------------GKGSPDRVDALVWA 408
>gi|38640149|ref|NP_944105.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
Aeh1]
gi|33414835|gb|AAQ17878.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
Aeh1]
Length = 633
Score = 85.0 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 62/461 (13%), Positives = 132/461 (28%), Gaps = 70/461 (15%)
Query: 14 KLFDLMWSD--EIKLSFSNFVLHFF-----PWGEKGTPLEGFSAPRSWQLEFMEVVDAHC 66
K M + + F + WG L R +Q + + ++ +
Sbjct: 125 KWTREMVEEWKRCRDDIVYFAETYCSIIHIDWGVIKVQL------RDYQKDMLRIMASER 178
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
++ N P R +GKTT A + + +V LA+ K L
Sbjct: 179 MSMHNLP------------RQLGKTTATAIFLTHFVVFNEAKAVGVLAHKGDMSKEVLER 226
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
+ + LLP+ P + ++ +++ +
Sbjct: 227 T-KQSIELLPD-----------FLQPGIVEWNKGNIELENGCSIGAY-------ASSPDA 267
Query: 187 HHNTYGMAIINDEASGTP--DVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNK 243
I DE + + IL + + R + T N +E+ K
Sbjct: 268 VRGNSFALIYVDECAFIEGFEDTWKAILPVISSGRQSRIILTSTPNGINHWYDLWEVSLK 327
Query: 244 PLDDWKRFQIDTRT--------VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+K + T + D F + + E +F
Sbjct: 328 SDKGFKPYTTTWITVKERLYDGSDAYDDGFEWASKQINSSSVEAFQQEHLCRFMGTSGTL 387
Query: 296 FIPLNI---------IEEALNREPCPDPYAPLIMGCDIAE--EGGDNTVVVLR---RGPV 341
+ ++ + P I D AE +T+ ++
Sbjct: 388 INGFKLSKMTWKEVIADDNFYQIEKPVEGNKYIATVDPAEGRGQDYSTIQIIDVTSYPYR 447
Query: 342 IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
++ +K + I +Y + I+ N+ G L + + ++
Sbjct: 448 QVAVYHSNKISPLLLPSVIMRYAMEYNNAWVYIELNSIGNMVAKSLFIDLEYENVIVDSS 507
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLI-NHSGLIQNLKS 441
+ + ++ + + + D +E LI +H G IQ ++
Sbjct: 508 KDLGMKQTKVTKAVGCSTLKDLIEKDKLIVSHKGTIQEFRT 548
>gi|309797383|ref|ZP_07691776.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
145-7]
gi|308119007|gb|EFO56269.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
145-7]
Length = 418
Score = 85.0 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 57/432 (13%), Positives = 107/432 (24%), Gaps = 58/432 (13%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ +V H +P FK + AGR GK+ L+ ++ + V +A +
Sbjct: 7 LSLVQLHSGQMKVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ LW ++ + L + + +
Sbjct: 66 MARQILWDDLQEVLPRKWVRKKNDTTMT---------------------IVLKNGSEIAL 104
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ D ++ DE D + L+ I T K
Sbjct: 105 KGADKPDTLRGVALHFVVLDEFQDMKADTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKL 164
Query: 238 YEIFN----KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ I + WK +Q T + + E D E F
Sbjct: 165 WTIGQNVELQRKGQWKSWQFVTADSPFVPTAEIEAAKNDM--DPKSFAQEYLASFENMSG 222
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD--NTVVVLRRGPVIEHLFDWSKT 351
+ P + N P + P + + D ++V++ + D
Sbjct: 223 RVYYPFD-----RNVHVKPLQFNPRLPIWVGQDFNIDPMSSVILQPQPNGELWAIDELVL 277
Query: 352 DLRTTNNKISGLVEKYRPDAIII----DANNT------GARTCDYLEMLGY-HVYRVLGQ 400
T L ++ + D G D + G+ V
Sbjct: 278 FSSNTAEVCDELERRFWRWKSQVTVFPDPAGAYRQHARGESDVDIFKEKGFLRVDYSKKH 337
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRV 460
D NR + L + SL+ I + +
Sbjct: 338 PPIADRVNAVNR------MLMSASGDIRLYIDPKCKHLIDSLEKVIYKPGTR---DMDKT 388
Query: 461 KGAKSTDYSDGL 472
G + +D L
Sbjct: 389 GGIEH--SADAL 398
>gi|217979215|ref|YP_002363362.1| hypothetical protein Msil_3091 [Methylocella silvestris BL2]
gi|217504591|gb|ACK52000.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length = 490
Score = 84.6 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 58/434 (13%), Positives = 113/434 (26%), Gaps = 48/434 (11%)
Query: 37 PWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
PW + G + E C + GR GKT A
Sbjct: 25 PWRAMLAAVFGLPL-DDYGAELFRQ----CTGRAEAQGAAFGFLWLVIGRRGGKTFAMAL 79
Query: 97 LVLWLMSTR---------PGISVICLANSETQLKTTLWAEVSKWLSL-LPNKHWFEMQSL 146
L +L R V+ +A Q K L +S L + K +
Sbjct: 80 LACFLGLFRDWTSRLAPGERAVVLLVAADREQAK-ILRRYISGILEAPMLAKMVEAETAD 138
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
++ +Y R + D++
Sbjct: 139 TIELKGRVV-------------IEVATCSYRTVRGRSVCVALLDEVAFWRRDDSVSPDTE 185
Query: 207 INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFH 266
+ + I + + ++ S+P SG + + K + +
Sbjct: 186 VFVAIRASMATFGDDAMMVVASSPYSKSGLLWTNYRKYFGKPDAQNLVWQAATRTMNPSV 245
Query: 267 EG--IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL---NREPCPDPYAPLIMG 321
I A D E QF + D+ +F+ IE + RE P P +
Sbjct: 246 PQSFIDAEIERDPVSAAAEYGAQF-RTDVAAFVDREAIEACVASGRRELPPAPGVRYVAF 304
Query: 322 CDIAEEGGDNT--VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
D + D+ + L + + + + + +
Sbjct: 305 ADPSGGSSDSMTLGICHAEKDKRIVLDVIREIRPPFSPDAVVSEFAETLKAYRLASVTGD 364
Query: 380 GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS--LINHSGLIQ 437
G R + + + R+E+++ M + L+++S L+
Sbjct: 365 ---------RYGGEWPRERFRVHGIRYDLSEKVRSEIYLAMLPLINSGRVELLDNSRLVA 415
Query: 438 NLKSLKSFIVPNTG 451
L L+ +
Sbjct: 416 QLAGLERRTARSGR 429
>gi|9632591|ref|NP_049776.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage T4]
gi|137951|sp|P17312|TERL_BPT4 RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein Gp17; AltName: Full=Terminase large subunit
gi|5354215|gb|AAD42422.1|AF158101_9 gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage T4]
gi|15201|emb|CAA36641.1| unnamed protein product [Enterobacteria phage T4]
gi|299780521|gb|ADJ39883.1| large terminase protein [Enterobacteria phage T4T]
Length = 610
Score = 84.6 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 57/461 (12%), Positives = 130/461 (28%), Gaps = 61/461 (13%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M + + + F + R +Q + ++++ + +
Sbjct: 97 NIKTQWTREMVEEWKKCRDDIVYFAETYCA-ITHIDYGVIKVQLRDYQRDMLKIMSSKRM 155
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N R +GKTT+ A + + +V LA+ + L
Sbjct: 156 TVCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 202
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 203 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 244
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I DE + P+ L I + + R + T N + +
Sbjct: 245 RGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 304
Query: 245 LDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS- 295
++ + +V + D + I G R E F
Sbjct: 305 KSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEGTSGTLI 364
Query: 296 ---------FIPLNIIEEALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVIEH 344
FI + + ++ P+P I D + + ++ +
Sbjct: 365 SGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWE 424
Query: 345 LFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
++ + + + + +Y + I+ N+TG L M + +
Sbjct: 425 QVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSY 484
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI H IQ ++
Sbjct: 485 TDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRT 525
>gi|220702483|pdb|3EZK|A Chain A, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
gi|220702484|pdb|3EZK|B Chain B, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
gi|220702485|pdb|3EZK|C Chain C, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
gi|220702486|pdb|3EZK|D Chain D, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
gi|220702487|pdb|3EZK|E Chain E, Bacteriophage T4 Gp17 Motor Assembly Based On Crystal
Structures And Cryo-Em Reconstructions
Length = 577
Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 57/461 (12%), Positives = 130/461 (28%), Gaps = 61/461 (13%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M + + + F + R +Q + ++++ + +
Sbjct: 97 NIKTQWTREMVEEWKKCRDDIVYFAETYCA-ITHIDYGVIKVQLRDYQRDMLKIMSSKRM 155
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N R +GKTT+ A + + +V LA+ + L
Sbjct: 156 TVCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 202
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 203 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 244
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I DE + P+ L I + + R + T N + +
Sbjct: 245 RGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 304
Query: 245 LDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS- 295
++ + +V + D + I G R E F
Sbjct: 305 KSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEGTSGTLI 364
Query: 296 ---------FIPLNIIEEALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVIEH 344
FI + + ++ P+P I D + + ++ +
Sbjct: 365 SGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWE 424
Query: 345 LFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
++ + + + + +Y + I+ N+TG L M + +
Sbjct: 425 QVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSY 484
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI H IQ ++
Sbjct: 485 TDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRT 525
>gi|158337379|ref|YP_001518554.1| hypothetical protein AM1_4258 [Acaryochloris marina MBIC11017]
gi|158307620|gb|ABW29237.1| conserved domain protein [Acaryochloris marina MBIC11017]
Length = 476
Score = 84.2 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 65/442 (14%), Positives = 127/442 (28%), Gaps = 67/442 (15%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
W + G L+ F WQ + + + + I GR +G + L
Sbjct: 41 WIKSGGSLKQFILWD-WQKDVV----DWIEEPQSLSDSPKLSVIIK-GRQLGLSQLCCSW 94
Query: 98 VLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDV 157
L+ + ++ +++ S+ + + + SL
Sbjct: 95 FLYKAWQNSAWVGVIISRTQSDSSLLA----SRMREMASTAGLVDFSTDSL--------- 141
Query: 158 LHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE 217
L + + + D+ G N + S +++
Sbjct: 142 LKLEISGGGTLHFRSAAVDAVRGIDSVSGILFDEAAFQTNLKLS------LSAATPAMSQ 195
Query: 218 RNANRFWIMTSNPRRLSGKFYEIFN-----------------KPLDDW------KRFQID 254
++ I+ S P SG F++ N P++ W I
Sbjct: 196 VGSDARIILCSTPNGASGHFFDTLNGFDNCVSDIERIRSGELPPVNKWQREDGNIAIAIH 255
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP-- 312
++V G +PS+ E + L E + ++ A E P
Sbjct: 256 WKSVYGDNPSYLEDLEKSLSLPKAQIAQEYDLSLTESSS-VVFSFAVVRAAATGEYEPQF 314
Query: 313 DPYAPLIMGCDIAEEGGDN--TVVVLRRG--PVIEHLFDWSKTDLRTTNNKISGLVEKYR 368
+G D A G D +V + + G + L+ L +I ++
Sbjct: 315 TEDELYYVGVDPAGSGADYFCSVFLKKTGETFTVSKLYRKRTGTLEVHMGRIDEFIKASN 374
Query: 369 PDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA 427
P + ++ N G + LE G + R N + L ++ LE
Sbjct: 375 PIKVTVETNGLGQFVYESLESRYGSVIERFNTT---------ANSKGALIGRLQLALERG 425
Query: 428 SLINHS--GLIQNLKSLKSFIV 447
+ + L Q L S +
Sbjct: 426 HISYPAGSPLEQELLSFRRVED 447
>gi|323170050|gb|EFZ55706.1| terminase, ATPase subunit domain protein [Escherichia coli LT-68]
Length = 276
Score = 83.8 bits (205), Expect = 6e-14, Method: Composition-based stats.
Identities = 38/275 (13%), Positives = 72/275 (26%), Gaps = 37/275 (13%)
Query: 246 DDWKRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLN 300
D R + V G + + I D R +F ++ +F I +
Sbjct: 14 DRTWRQIVTLEDVVNHGWKHTDIDEIRDENTEDE--FRNLYMCEFVREGESAFNLNILIG 71
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV--------------VVLRRGPVIEHLF 346
+ + P+AP MG G D G +
Sbjct: 72 CGVDGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVE 131
Query: 347 DW--SKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRA 403
+ I +Y + I IDA G ++ +
Sbjct: 132 TRRVQGLEFEEQARVIEEFTYRYNVEHIGIDATGGHGDAVYQIVKRFFPAAIPYTFTLSS 191
Query: 404 VDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRV 460
+R+ L +KM + L+ +++ G + E+ R
Sbjct: 192 --------KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRA 241
Query: 461 KGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+G D + M P + + R ++
Sbjct: 242 RGISHGDLAWATMLAVINEPIGGEGENERFTVMEF 276
>gi|166012063|ref|ZP_02232961.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|167427125|ref|ZP_02318878.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|2996304|gb|AAC13184.1| P-loop protein [Yersinia pestis KIM 10]
gi|165988997|gb|EDR41298.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str.
E1979001]
gi|167053876|gb|EDR63708.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis
str. K1973002]
Length = 402
Score = 83.4 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 53/409 (12%), Positives = 99/409 (24%), Gaps = 57/409 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ AGR GK+ L+ ++ + V +A + + LW ++ + L +
Sbjct: 13 VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQMARQILWDDLQEVLPRKWVRKKN 72
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + + D ++ DE
Sbjct: 73 DTTMT---------------------IVLKNGSEIALKGADKPDTLRGVALHFVVLDEFQ 111
Query: 202 GT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP----LDDWKRFQIDTR 256
PD + L+ I T K + I WK +Q T
Sbjct: 112 DMKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKLWTIGQNKDLQRKGQWKSWQFVTA 171
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ + E D E F + P + N P +
Sbjct: 172 DSPFVPSAEIEAAKNDM--DPKSFAQEYLASFENMSGRVYYPFD-----RNVHVKPLQFN 224
Query: 317 PLIMGCDIAEEGGD--NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
P + + D ++V++ + D T L ++ +
Sbjct: 225 PKLPIWVGQDFNIDPMSSVILQPQPNGELWAVDEVVLFSSNTAEVCDELERRFWRWKSQV 284
Query: 375 ----DANNT------GARTCDYLEMLGY-HVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
D G D + G+ V D NR +
Sbjct: 285 TIFPDPAGAYRQHARGESDVDIFKEKGFLRVDYPKKHPPIADRVNAVNR------MLMSA 338
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
L + SL+ I + + G + +D L
Sbjct: 339 SGETRLYIDPKCKHLIDSLEKVIYKPGSR---DMDKTGGIEH--SADAL 382
>gi|190890121|ref|YP_001976663.1| hypothetical protein RHECIAT_CH0000492 [Rhizobium etli CIAT 652]
gi|190695400|gb|ACE89485.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 465
Score = 83.4 bits (204), Expect = 8e-14, Method: Composition-based stats.
Identities = 54/408 (13%), Positives = 114/408 (27%), Gaps = 49/408 (12%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPG---------ISVICLANSETQLKTTLWAEVSKWLSLL 135
GR GK+ A + ++L +V+ +A Q + L V L +
Sbjct: 68 GRRGGKSFTMALIAVFLACFFDYRQYLAPGERATVLVIATDRRQARVIL-RYVRAMLDNI 126
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P + + D + + R+ +
Sbjct: 127 PLLQAMVERDTA--------DSFDLDNSTTIEVGTASFRSTRGYT---YAAVLCDELAFW 175
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK---PLDDWKRFQ 252
D+A+ I I + N + S+P G ++ F + D ++
Sbjct: 176 RTDDAAEPDYAILDAIRPGMASI-PNSMLLCASSPHARRGALWDAFKRFWGKDDAPLVWR 234
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR---E 309
TR + + D E +F F+ + ++E+ ++R E
Sbjct: 235 AATREMNPTISQSV--VDRALERDHASAMAEYGAEFRSDIE-QFVNIEVVEDCVSRGVYE 291
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
P P D + D+ + + G L + + +
Sbjct: 292 RAPLPNIRYRAFVDPSGGSNDSMTLAIGHKEGER-NILDCVRERKPPFSPESVVAEFADT 350
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA 427
+ + R +K+ + + R++L+ M L
Sbjct: 351 LAKYRVREVEGD---------RYAGEWPREQFRKKGITYKIAEKPRSDLYRDMLPLLNSG 401
Query: 428 --SLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
L++ L+ + L+ V G+ ES D ++ +
Sbjct: 402 VADLLDSDRLVTQIVGLER-RVSRGGK---ESIDHAPGGHDDLANAVA 445
>gi|289805729|ref|ZP_06536358.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 257
Score = 83.4 bits (204), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 56/181 (30%), Gaps = 3/181 (1%)
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
+ +EA + + + + + W + + + P +D
Sbjct: 78 EGIDVLWLEEAHALTEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEDTL 136
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+I+ + + + I A D + G D + I L+ IE A++
Sbjct: 137 IRKINYDENPFLSDTMLKVIDAARRRDPEGFVHVYEGVPESDDDAAIIKLSWIEAAVDAH 196
Query: 310 PCPD--PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
D P +G D+A+ G D V R G VI +W + +
Sbjct: 197 KVLDFGPEGRKRIGFDVADSGADKCANVYRYGSVIYWADEWKAKEDELLKSCQRTYQAAM 256
Query: 368 R 368
Sbjct: 257 G 257
>gi|261346829|ref|ZP_05974473.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
gi|282565077|gb|EFB70612.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
Length = 133
Score = 83.4 bits (204), Expect = 9e-14, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 12/132 (9%)
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ I L E+Y I ID+ G + + + L
Sbjct: 2 DAIKELTERYNVQYIGIDSTGIGHGVLQNVREFFPAAKEFIYNPA---------LKNALV 52
Query: 418 VKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
+K D + L + + Q+ +++ + E+ R + + D + M+
Sbjct: 53 LKAYDVISHDRLEYDAGCNDITQSFMAIRRATTASGNRPTYEADRSEESSHADLAWATMH 112
Query: 475 TFAENPPRSDMD 486
P +
Sbjct: 113 ALYNEPITGENS 124
>gi|329954246|ref|ZP_08295340.1| phage terminase, large subunit, PBSX family [Bacteroides clarus YIT
12056]
gi|328527952|gb|EGF54938.1| phage terminase, large subunit, PBSX family [Bacteroides clarus YIT
12056]
Length = 438
Score = 83.0 bits (203), Expect = 9e-14, Method: Composition-based stats.
Identities = 50/356 (14%), Positives = 109/356 (30%), Gaps = 31/356 (8%)
Query: 152 PWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGI 211
P+Y + + TY + + + +EA + +
Sbjct: 82 PYYHLTNDGIKFDNGSEIIFLDLTYYPYKDPMYERFGSLEFTGGWIEEAGQVNRLAFEVL 141
Query: 212 LGFLTER-----NANRFWIMTSNPRRL--SGKFYEIF--NKPLDDWKRFQIDTRTVEGID 262
+ N ++T NP++ KFY+ + +K D + Q +
Sbjct: 142 QTRIGRHLNDVYNVPGKILITCNPKKNWLYDKFYKPWKEHKLKDGYAFVQALVQDNPFAT 201
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI--PLNIIEEALNREPCPDPYAPLIM 320
+ + D G + + + + I + +N P +
Sbjct: 202 EDYINTLKNTN--DKVTKERLYFGNWEYDNDPAVLCDYDAICDLFVNEHVQPVGLSTGSS 259
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
+ G D V G V D + ++ + ++ ++ ++ ++ G
Sbjct: 260 DLAMK--GRDRFVSGHWIGNVCYIRLDQEYSTGKSIEADLKNMMIQWSIPRSMMIVDSDG 317
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH------SG 434
YLE + G R ++ E N ++E K+A+ + +
Sbjct: 318 LG--SYLESYLNGIKEFHGGNRPINPE-FDNLKSECAFKLAELINNRQIRIICTEAQRER 374
Query: 435 LIQNLKSLKSFIVP----NTGELAIESKRVKGAKSTDYSDGLMYTF---AENPPRS 483
+I+ L LK + G ++ E + S DY D L+ + P+
Sbjct: 375 IIEELGVLKQDHIDADTRKKGIISKEKMKEILGHSPDYLDMLIMAMFFRIKPIPKR 430
>gi|53802921|ref|YP_115325.1| prophage MuMc02, terminase, ATPase subunit [Methylococcus
capsulatus str. Bath]
gi|53756682|gb|AAU90973.1| putative prophage MuMc02, terminase, ATPase subunit [Methylococcus
capsulatus str. Bath]
Length = 443
Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 53/409 (12%), Positives = 102/409 (24%), Gaps = 48/409 (11%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGI----SVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
R GKT ++ + L+ E Q + + V + L
Sbjct: 26 ARQCGKTFTTTLELVMDCLQAEAQGGRRRWVILSRGERQAREAMEEGVKRHLHA------ 79
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-E 199
+ + + + + P ++++
Sbjct: 80 --------FQTGFKALEYDFEASVKALEVVLPGGSRISALPANPDTARGFTASVLLDEFA 131
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID-TRTV 258
I + ++ + I T N + KFY++ W R D + V
Sbjct: 132 FHADSRKIWQALFPVVSRSDLKLRVISTPNGKG--NKFYDLITGDHPVWSRHVTDIYQAV 189
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEALNREPCPDPY 315
P E + A G D D E Q+ + +I E P
Sbjct: 190 ADGLPRDIEELKAGVGDD-DAWAQEYELQWLDEASAWL-SFELINSVEHDHAGIPEHYAG 247
Query: 316 APLIMGCDIAEEGGDNTVV----VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
P +G DIA D V+ + + + + ++ +YR
Sbjct: 248 GPCFLGVDIA-ARNDLFVIWVLEAVGDVYWTREILARRRISFAEQDALLADAFNRYRVIR 306
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNR-RTELHVKMADWLEFASL- 429
+D G + + + V+ + L + E +
Sbjct: 307 CCMDQTGMGEKPVEDAQRR--------FGSSRVEGVLFTGPNKLALATTGKEAFEDRRIR 358
Query: 430 --INHSGLIQNLKSLKS-FIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ L +L LK +S A D +
Sbjct: 359 IPEGNQELRNDLHKLKKETSATGAPRFVADS---DSAGHADRAWACFLA 404
>gi|304373761|ref|YP_003858506.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
RB16]
gi|299829717|gb|ADJ55510.1| gp17 terminase subunit, nuclease and ATPase [Enterobacteria phage
RB16]
Length = 609
Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 62/449 (13%), Positives = 126/449 (28%), Gaps = 63/449 (14%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ + F + R +Q E + + + + A
Sbjct: 110 KCRDDIVYFAETYCA-ITHIDYGTIKVQLRDYQKEMLIEMHKNRM------------VAC 156
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
+ R +GKTT+ A + + V LA+ + L + + LLP+
Sbjct: 157 NLSRQLGKTTVVAIFLAHFVCFNEDKFVGVLAHKASMSAEVL-DRTKQAIELLPD----- 210
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
P + S+ +D+K + I DE +
Sbjct: 211 ------FLQPGIVEWNKGSIELDNKCKIGAF-------ASSPDAVRGNAFAMIYIDECAF 257
Query: 203 TPD--VINLGILGFLTERNANRFWI-MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
P+ L I ++ ++ I T N + + + + +V+
Sbjct: 258 IPNFQDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFVPYTAIWTSVK 317
Query: 260 ----------GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID----------SFIPL 299
D + G + E C +F + S+I +
Sbjct: 318 ERLYTDGDDGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWKLSKMSWIDI 377
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVI----EHLFDWSKTDLR 354
+ E + P + D AE G D + + + ++ ++T
Sbjct: 378 DETETNFYQYKKPIEGHKYVAVLDPAEGRGQDYHAMHIIDISAMPFEQVAVYHSNRTSHL 437
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ + + Y I I+ N+TG L L Y + + +
Sbjct: 438 ILPDILLRYLNMYNEAWIYIELNSTGHSVAKSLFSELEYENVICDSYNDLGMKQT-KRSK 496
Query: 414 TELHVKMADWLEFASL-INHSGLIQNLKS 441
+ D +E L IN+ I ++
Sbjct: 497 AMGCSTLKDLIEKDKLIINNKKTILEFRT 525
>gi|12276099|gb|AAG50261.1|AF311654_1 probable terminase [Phage GMSE-1]
Length = 268
Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 64/234 (27%), Gaps = 29/234 (12%)
Query: 267 EGIIARYGLDSDVTRVE-VCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPL----- 318
+ QF F ++ + R P A
Sbjct: 32 QAWERLRSKYPARYFNMLYQCQFVDSGDSVFSFGDLERCGVETVRWQDHQPNAARPFGNR 91
Query: 319 --IMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
G D A G +T V++ + F W + + ++I L +Y
Sbjct: 92 EVWAGFDPARSGDTSTFVIMAPPQYEGERFRVLVTFYWQGMNWKYQASQIKALFARYHMT 151
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC-RNRRTELHVKMADWLEFASL 429
I ID G+ + +E R +T + +KM D +E +
Sbjct: 152 HIGIDTTGIGSGVFEMVEA---------FAPRQTVAIRYGVETKTRMVLKMVDLVESKRI 202
Query: 430 INH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ + S++ G + + R + D L ++ P
Sbjct: 203 EWDGEQKEIAASFLSIRRTSTAKGGGMTFIADRSQKTGHADVFFALSHSADNEP 256
>gi|311992670|ref|YP_004009538.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Ac42]
gi|298684453|gb|ADI96414.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Ac42]
Length = 619
Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 61/454 (13%), Positives = 124/454 (27%), Gaps = 61/454 (13%)
Query: 15 LFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNN 72
M S+ + + F + R +Q + ++++D L
Sbjct: 113 WTKEMLSEWKKCRDDIVYFAETYCA-ITHIDYGTIKVKLRDYQRDMLQLMDGGRL----- 166
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132
R +GKT A + + S LA+ + + L+ + +
Sbjct: 167 -------TCCKLSRQLGKTAAVAIFLAHYVCFNKSKSAGILAHKGSMSEEVLFR-AKQAI 218
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
LLP+ P + S+ +D+ +
Sbjct: 219 ELLPD-----------FLQPGIVEWNKRSIELDNGSSIGAY-------ASSPDAVRGNSF 260
Query: 193 MAIINDEASGTP--DVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
I DE + + L I + + R++ T N ++ K ++
Sbjct: 261 ALIYIDETAFIQNWEDCWLAIQPVISSGRHSKIIMTTTPNGMNHFYDLWQGAIKGKSGFR 320
Query: 250 RFQIDT--------RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
++ D + A + E G F +
Sbjct: 321 PYEATWVSVKERLYTEAGDFDDGWEFSYRAIGSSSLEQFLQEHLGNFSGGSNTLIAGPKL 380
Query: 302 I----------EEALNREPCPDPYAPLIMGCDIAEEGG-DNTVV----VLRRGPVIEHLF 346
+ + P+P I D AE G D + V + +
Sbjct: 381 VLLEGKKIIPDSYGFYQFETPNPERKYIATLDSAEGRGQDYHALNIIDVTDQTWRQVGVL 440
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ + + + KY I I+ N+TG L + + + + +
Sbjct: 441 HSNTISHLILPDIVLSYLNKYNEAPIYIELNSTGVSIAKSLYLDLEYENVICDSFVDLGM 500
Query: 407 EFCRNRRTELHVKMADWLEFASL-INHSGLIQNL 439
+ + + + D +E L INH I+ L
Sbjct: 501 KQTKRSKAMGCSTLKDMIEKDKLIINHVKTIEEL 534
>gi|220702377|pdb|3CPE|A Chain A, Crystal Structure Of T4 Gp17
Length = 592
Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/461 (11%), Positives = 130/461 (28%), Gaps = 61/461 (13%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M + + + F + R +Q + ++++ + +
Sbjct: 122 NIKTQWTREMVEEWKKCRDDIVYFAETYCA-ITHIDYGVIKVQLRDYQRDMLKIMSSKRM 180
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N R +GKTT+ A + + +V LA+ + L
Sbjct: 181 TVCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 227
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 228 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 269
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I ++ + P+ L I + + R + T N + +
Sbjct: 270 RGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 329
Query: 245 LDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS- 295
++ + +V + D + I G R E F
Sbjct: 330 KSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEGTSGTLI 389
Query: 296 ---------FIPLNIIEEALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVIEH 344
FI + + ++ P+P I D + + ++ +
Sbjct: 390 SGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWE 449
Query: 345 LFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
++ + + + + +Y + I+ N+TG L M + +
Sbjct: 450 QVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSY 509
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI H IQ ++
Sbjct: 510 TDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRT 550
>gi|225851344|ref|YP_002731578.1| hypothetical protein PERMA_1815 [Persephonella marina EX-H1]
gi|225646641|gb|ACO04827.1| conserved hypothetical protein [Persephonella marina EX-H1]
Length = 518
Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/407 (13%), Positives = 105/407 (25%), Gaps = 49/407 (12%)
Query: 7 TNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME------ 60
+ +Q ++ K F F ++ + FS P +Q ++
Sbjct: 16 KSRSPQQDPEKQARVEKAKNDFWYFCSYYL-------SHKFFSEPAPYQKLLIQLFNTRN 68
Query: 61 VVDAHCLNSVNNPNPEVFKGAISA----------GRGIGKTTLNAWLVLWLMSTRPGISV 110
PE +K I RG GKTT +LW ++
Sbjct: 69 ATPEIVEKLKEWTEPETWKYLIPKKNIKGIINIEPRGHGKTTRAEAFLLWNAIFEKHKNI 128
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ +A S+ + L + F S A + S+
Sbjct: 129 MVIAASKEAAEEILENIKLEVEENEKLLEDFGELEGSPWKANYIKFKNGVSISARGIDGR 188
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
S + + E+ + I + +I+ +N
Sbjct: 189 IRG---SRKGATRPDLILCDDLIKDQAAESPTLREKIYNRFKRAVLPMADRDAFIIFTNT 245
Query: 231 --RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI------------IARYGLD 276
+ K + ID + E +
Sbjct: 246 ILHYDDLPSRLLKEYEQGKHKEWFAVFFATPFIDKNGEEKALWDSYWDLESLRKKEEQIG 305
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIA--EEGGDNTVV 334
S E + P+ + D + + + ++MG D A ++ GD + +
Sbjct: 306 STAFAQEYRNR-PRSEKDMIFKPDWFQY-YDITEVWGKKLDVVMGVDPATGKKDGDYSAI 363
Query: 335 VLR-----RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V G + NK+ + Y+P II ++
Sbjct: 364 VTVGKDMSTGLYYVLDAFGERISDLKFVNKLIEKYQLYKPRKIIFES 410
>gi|300922774|ref|ZP_07138861.1| conserved domain protein [Escherichia coli MS 182-1]
gi|300420878|gb|EFK04189.1| conserved domain protein [Escherichia coli MS 182-1]
Length = 199
Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 48/183 (26%), Gaps = 55/183 (30%)
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGAR----TCDYLEMLGYHVYRVLGQKRAVDL 406
D+ + + + + D + D + GA T + G + D
Sbjct: 1 MDINEGADWATSMAIEDGADHYLWDGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDE 60
Query: 407 EF-----------------------CRNRRTELHVKMADWL-------EFASLINHSG-- 434
+ RN+R + + +AD L +
Sbjct: 61 DAPYQAGAWADEVVQGDNVRTIGDVFRNKRAQFYYALADRLYLTYRAVAHGEYADPDDML 120
Query: 435 --------------LIQNLKSLKSFIVPNTGEL----AIESKRVKGAKSTDYSDGLMYTF 476
L L ++ N G+L +E K+ G S + +D LM
Sbjct: 121 SFDKEAIGEKMLEKLFAELTQIQR-KFNNNGKLELMTKVEMKQKLGIPSPNLADALMMCM 179
Query: 477 AEN 479
Sbjct: 180 HCP 182
>gi|85059367|ref|YP_455069.1| putative phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84779887|dbj|BAE74664.1| putative phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 264
Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/266 (13%), Positives = 71/266 (26%), Gaps = 23/266 (8%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P +K A GRG GK+ A L++ R G A E ++
Sbjct: 13 QPHRYKIA-KGGRGSGKSWAIARLLVE--IARRGTYRFLCA-----------REFQASMA 58
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM-CRTYSEERPDTFVGHHNTYG 192
+ + + + + + + + + G
Sbjct: 59 DSVIQLIADTIQREGYLKEFEIQKAYIRHLAATDSLFMFYGIKNNVTKIKSLEGI----- 113
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+EA ++ + + + W+ ++ L + P DD
Sbjct: 114 DIAWVEEAEAVTKESWDILIPTIRKPGSE-IWVSFNSKNILDDTYQRFVVNPPDDICLLT 172
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ + D D+ GQ + I I A++
Sbjct: 173 VHYTDNPHFPEVLRLEMEECKCKDYDLYLHIWEGQPVADSDLAIIKPLWIAAAVDAHMTL 232
Query: 313 --DPYAPLIMGCDIAEEGGDNTVVVL 336
D +G D+A+EG T L
Sbjct: 233 GFDAVGEKRLGFDVADEGKTATPCAL 258
>gi|182415227|ref|YP_001820293.1| hypothetical protein Oter_3416 [Opitutus terrae PB90-1]
gi|177842441|gb|ACB76693.1| protein of unknown function DUF264 [Opitutus terrae PB90-1]
Length = 521
Score = 82.3 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 63/500 (12%), Positives = 124/500 (24%), Gaps = 71/500 (14%)
Query: 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL 101
G + R +Q + V+ H + R IGK+T A +
Sbjct: 23 GGMVPTLLHYRGYQ---LPVIHDHTTKTAILHW----------SRQIGKSTTLAGWAVDR 69
Query: 102 MS----TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDV 157
+ T V L+NS + L + D
Sbjct: 70 LLKQLQTHDTWLVTVLSNSRANGGEFVLKVHEVCRKLGQAFVEDGNREALADDKTMSEDA 129
Query: 158 LHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-EASGTPDVINLGILGFLT 216
+ + + G I+++ I ++
Sbjct: 130 KLELMRFEVRLQVGQKLGRIIVLAANPRTARGFSGDLILDEFAFHQDSRAIWEAAEPIIS 189
Query: 217 ERNANRFWIMTSNPRRLSGKFYE---------IFNKPLDDWKRFQIDTRTVEGIDPSFHE 267
N ++S FY+ + D WKR +I +V
Sbjct: 190 -ANPEFLCRISSTGNGRRNMFYQLIAEGRIPYYRMRRSDAWKRGEIRIYSV-VTGEEITP 247
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDI----DSFIPLNIIEEALNREPCPDPY-------- 315
D G+F + I E
Sbjct: 248 DQARAEASDKRAYDQNYEGEFNDEASALLTQELISAAEREGIAIEHQEWSEATIERLRTK 307
Query: 316 --APLIMGCDIAEEGGDN--TVV-VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
L +G D+ + + TV+ + G + + L ++ + + +
Sbjct: 308 TIGDLFLGQDVGRKRDFSVQTVIERIGSGYRVVAMLRMENMRLPAQQRELEKICKLPKFR 367
Query: 371 AIIIDANNTGARTCDYLEM--LGYHVYRVLGQKRAV--DLEFCRNRRTE-------LHVK 419
+ ID G +Y + G +V V ++ E + +
Sbjct: 368 SAEIDMTGLGLGLVEYAQEEPWGGNVRGVNFGSSEPISLKLRADGKKGETAPVTELMATE 427
Query: 420 MADWLEFAS--LINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT-- 475
+ E + L +L+ +V +G ++I + R + D+ +
Sbjct: 428 LLGVFEDKRIEIPMDPELRDDLRK-PEKLVSPSGRVSIAAVRDEAG-HADHFWSVALAVR 485
Query: 476 --------FAENPPRSDMDF 487
FA +P R
Sbjct: 486 ASVRGGVPFAYSPVRGAHRG 505
>gi|294508906|ref|YP_003566117.1| hypothetical protein PSR_11004 [Salinibacter ruber M8]
gi|294342043|emb|CBH22709.1| conserved hypothetical protein [Salinibacter ruber M8]
Length = 255
Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/246 (17%), Positives = 74/246 (30%), Gaps = 39/246 (15%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ + + + ++ R GKTT +A L L V
Sbjct: 8 PDPWQEALLTS--------------DWERALLNCARQSGKTTASAALALETALEATDSLV 53
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ LA + Q K L + S + P+ + L L ++ +L
Sbjct: 54 LILAPARRQSKEFLRSVRSLYRDAAPDGGLDKQSELRLRL---ENESRIIALPGKEGT-- 108
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+I DEA+ PD + L + T P
Sbjct: 109 ----------------VRGYTADLVIADEAARVPDAAYVATRPMLAVTGGRFVGLST--P 150
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
G FYE + P +W++ ++ + + +F E G R E +F
Sbjct: 151 AGQRGWFYEAWTDPGQEWEQVKVTGQDCPRMTEAFLEQERREMGD--WQFRSEYMCEFTD 208
Query: 291 QDIDSF 296
+ F
Sbjct: 209 TEDQLF 214
>gi|213620985|ref|ZP_03373768.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
Length = 320
Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/329 (11%), Positives = 83/329 (25%), Gaps = 47/329 (14%)
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDWKRF 251
+ ++ T + ++ R+ ++ + D R
Sbjct: 11 YFSTPSTETHEAYAYW-------NGDRWNEKKATHKRQRFSVDWKTLHNGLICPDRTWRQ 63
Query: 252 QIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF---IPLNIIEEAL 306
+ V G + + I D +F ++ +F I + +
Sbjct: 64 IVTLEDVVNHGWKHTDIDEIRDENTEDE--FLNLYMCEFVREGESAFNLNILIGCGVDGY 121
Query: 307 NREPCPDP-------YAPLIMGCDIAEEGGD-------NTVVVLRRGPVIEHLFDW--SK 350
+ P P+ +G D G+ V G +
Sbjct: 122 DDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPPAVPGGRFRTVETRRVQG 181
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ I +Y + I ID G ++ +
Sbjct: 182 LEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTLSS------ 235
Query: 410 RNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKST 466
+R+ L +KM + L+ +++ G + E+ R +G
Sbjct: 236 --KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGISHG 291
Query: 467 DYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
D + M P + + R ++
Sbjct: 292 DLAWATMLAVINEPIGGEGENERFTVMEF 320
>gi|152982949|ref|YP_001353896.1| hypothetical protein mma_2206 [Janthinobacterium sp. Marseille]
gi|151283026|gb|ABR91436.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 436
Score = 81.9 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/292 (15%), Positives = 77/292 (26%), Gaps = 28/292 (9%)
Query: 71 NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--GISVICLANSETQLKTTLWAEV 128
N + A R GKT ++ T +A Q K+ W V
Sbjct: 18 ELHNRRQRWAVVVAHRRAGKTVACVNELIKAALTFHGNDGRFAYVAPFYRQAKSVAWDYV 77
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH 188
++ +++P E + +P D
Sbjct: 78 KRFSAVIPGISINESELRIDYPN---------------------GSRIQLFGADNADALR 116
Query: 189 NTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
+ ++ DE P V I L +R I T R + Y+ +D
Sbjct: 117 GLFFDGVVADEYGDWKPSVWGYVIRPALADRGGWAVIIGTPKGRNQFWEIYQ-HAGVNED 175
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
W I + P E + D R E+ F + I + +
Sbjct: 176 WLCLTIRASESGLLPPKEIEALQLELTED--AWRQEMECDFDAALPGAIFGKEIWQAEQD 233
Query: 308 REPCPDPYAPLIMGCDIAE-EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNN 358
D Y P + + + D+T + + + D T +
Sbjct: 234 GRVKDDLYDPELKVHAVLDLGFTDDTAIWWFQVGKELRIIDCYSTHGMPIAH 285
>gi|326536310|ref|YP_004300751.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage 133]
gi|299483391|gb|ADJ19485.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage 133]
Length = 606
Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats.
Identities = 61/466 (13%), Positives = 125/466 (26%), Gaps = 67/466 (14%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVD 63
P E ++ + + F + R +Q + ++++D
Sbjct: 95 RTPYTREMIEEWK------KCRDDILYFAETYCA-ITHIDHGTIKVKLRDYQRDMLQLMD 147
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
+ L R +GKT A + + SV LA+ + +
Sbjct: 148 SGRL------------TCAKLSRQLGKTAAVAIFLAHYVCFNESKSVGILAHKGSMSEEV 195
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
L+ + + LLP+ P + S+ +D+ +
Sbjct: 196 LFRT-KQAIELLPD-----------FLQPGIVEWNKRSIELDNGSSIGAF-------ASS 236
Query: 184 FVGHHNTYGMAIINDEASGTP--DVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEI 240
I DE + D L I + + R++ T N ++
Sbjct: 237 PDAVRGNSFSLIYIDETAFVQNWDDCWLAIQPVISSGRHSKIIMTTTPNGMNHFYDLWQG 296
Query: 241 FNKPLDDWKRFQIDT--------RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
++ ++ + D + A + E G F
Sbjct: 297 AINGTSGFRPYEATWVSVKDRLYNEADTFDDGWEFSARAIGSSSIEQFLQEHLGNFAGGS 356
Query: 293 IDSFIPLNII----------EEALNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPV 341
+ + P I D AE G D + +
Sbjct: 357 NTLIDGTKLAVLFGQERIADQHEFIEFKPPVAGRKYIATLDSAEGRGQDYHALHIIDVTD 416
Query: 342 IEH----LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYR 396
+ + +K + I + +Y + I+ N+TG L L Y
Sbjct: 417 EQWEQAGVLHSNKISHLILADIIFLYLTRYNEAPVYIELNSTGVSIAKTLYIDLEYEYVI 476
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKS 441
+ + + + + D +E L +NH I+ L++
Sbjct: 477 CDSYQDLGMKQT-KRSKAVGCSTLKDLIEKNKLKLNHIQTIKELRT 521
>gi|114320225|ref|YP_741908.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1]
gi|114226619|gb|ABI56418.1| hypothetical protein Mlg_1066 [Alkalilimnicola ehrlichii MLHE-1]
Length = 463
Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 55/408 (13%), Positives = 117/408 (28%), Gaps = 40/408 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVIC---LANSETQLKTTLWAEVSKWLSLLPNKHWF 141
GR GK+ A L ++ + + +A + + + ++
Sbjct: 69 GRRGGKSNAAALLAVYEACFKDHRDALAPGEVATTRVMAAD-------RAQARSVFRYIS 121
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR-TYSEERPDTFVGHHNTYGMAIINDEA 200
+ + S+ + ++ + ++ R TF +D++
Sbjct: 122 GLMHANPMLERLIVREDRESIELSNRAVIEVGTASFRTTRGYTFAAVIADEVAFWRSDDS 181
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
+ I + L N I S+P G+ +E + + +
Sbjct: 182 ANPDSEIIAAVRPGLATLNGK--LIALSSPYARRGELWENYRRHYGKASPILVAQAPSRT 239
Query: 261 IDPSFHEGII-ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---REPCPDPYA 316
++PS E ++ D E +F +F+ ++E A E +
Sbjct: 240 MNPSLPERVVTEAMERDPASAAAEYLAEFRTDVE-TFLQREVVEAATRPTPLELPYNKRV 298
Query: 317 PLIMGCDIAEEGGDN--TVVVLRRGPV-IEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
D A G D + R G + + K + + L++ YR I
Sbjct: 299 TYTAFVDPAGGGADEFTAAIGHREGERVVVDVLRARKGTPAEIVAEYADLLKSYRITRAI 358
Query: 374 IDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS--LIN 431
D + + +E +++L+ M + A L
Sbjct: 359 SD-------------RYAGSWPADEFSRHGITVEQAAKPKSDLYRDMLASMNSARVELPP 405
Query: 432 HSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAEN 479
L+ L SL+ +S D ++ + A N
Sbjct: 406 DDRLMTQLISLERRTARGGR----DSIDHAPGGHDDRANAVAGLVAAN 449
>gi|329888629|ref|ZP_08267227.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568]
gi|328847185|gb|EGF96747.1| phage DNA packaging protein [Brevundimonas diminuta ATCC 11568]
Length = 411
Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/404 (14%), Positives = 106/404 (26%), Gaps = 45/404 (11%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A GRG K+ ++ T P + V+ L L + V K L
Sbjct: 24 AAHGGRGSAKSWSVVDAAIFHTVTTPRLRVVFLREIMANLTESSLELVRKRLEH------ 77
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
Y ++ + + +P+ I +EA
Sbjct: 78 -------FGLLGSYFREVNGTFQGLGGQKIMFIGLWKGGKPEGIKSLEGAGLT--ILEEA 128
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP--LDDWKRFQIDTRTV 258
+L + + W NPR + F P +I+
Sbjct: 129 QEVRQASLDVLLPTILRTAISELW-AIWNPRLDTDPIDVFFRGPVKPKGAIVRKINYDQN 187
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL--NREPCPDPYA 316
+ E + + D G + + ++EA R +
Sbjct: 188 PHFPDALRELMELDFSKDKLRAAWIWLGGYMPSVQGAIWNREGLDEAWREGRHAPEGSWG 247
Query: 317 PLIMGCDIAEEGGDNTVVV---LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
+++G D + G D +VV G +I T + V+++ D ++
Sbjct: 248 RVVVGVDPSGGGDDVGIVVAAEYGDGAIILEDATCPATSPMAWATATAKAVDRWGADCVV 307
Query: 374 IDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLEFASLIN 431
+ N G L G V+ R E + D +
Sbjct: 308 AEKNFGGDMVESTLRAGGVKARVVMVTASRGKQ-----VRAEPVAALYDQKRIRHREQFP 362
Query: 432 HSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
L + + G +G S + D L++
Sbjct: 363 -------LMEAEMLMTTPAGY--------QGEDSPNRMDALVWA 391
>gi|308814529|ref|YP_003934803.1| terminase DNA packaging enzyme large subunit [Shigella phage SP18]
gi|308206121|gb|ADO19520.1| terminase DNA packaging enzyme large subunit [Shigella phage SP18]
Length = 610
Score = 81.5 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 60/412 (14%), Positives = 117/412 (28%), Gaps = 70/412 (16%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
+ E Q+ + + F + R +Q + +E++
Sbjct: 100 IKWTKEMVQEWK------KCRDDIVYFAETYCA-ITHIDYGTIKVQLRDYQRDMLEIMHK 152
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ N R +GKTT+ A + + +V LA+ + L
Sbjct: 153 KRMTVCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL 200
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + LLP+ P S+ ++ +D+ +
Sbjct: 201 -DRTKQAIELLPD-----------FLQPGISEWNKGNITLDNGSTIGAY-------ASSP 241
Query: 185 VGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
I DE + P+ L I ++ I+T+ P L FY+I+
Sbjct: 242 DAVRGNSFAMIYIDECAFIPNFVDAWLAIQPVISS-GRRSKIIITTTPNGL-NHFYDIWT 299
Query: 243 KPLDDWKRFQID-----------TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
++ F+ + D + + E QF Q
Sbjct: 300 AAIEKKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASTLEQFNQEHGAQF-QG 358
Query: 292 DIDSFIP------LNIIEEA-----LNREPCPDPYAPLIMGCDIAEEGG-DNTVVVL--- 336
+ I ++ IE R PDP I D +E G D + +
Sbjct: 359 TSGTLISGMKLAIMDWIEVMPENGYFYRYKKPDPERKYIASLDCSEGRGQDYHALHIIDV 418
Query: 337 -RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
+ ++ + + + +Y + I+ N+TG L
Sbjct: 419 TDEKWEQVAVLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSL 470
>gi|82776052|ref|YP_402399.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
gi|81240200|gb|ABB60910.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
Length = 272
Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/252 (13%), Positives = 74/252 (29%), Gaps = 21/252 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR K+ A + ++ + C A Q++ + V L + ++
Sbjct: 39 GGRSSSKSWDAAGIAIF--LSNKYTLRFCCA---RQIQNKIEESVYTLLKIQIDRFGLRH 93
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + E + G + +EA
Sbjct: 94 --------RFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGI-----DVLWLEEAHAL 140
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + + + W + + + P + +I+ +
Sbjct: 141 TEYQWKILEPTIRKEGSE-CWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLSD 199
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--DPYAPLIMG 321
+ + I A D D + G D + I L+ IE A++ +P +G
Sbjct: 200 TMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIIKLSWIEAAVDAHKTLNFEPSGRKRIG 259
Query: 322 CDIAEEGGDNTV 333
D+A+ G D
Sbjct: 260 FDVADSGTDKCA 271
>gi|326536497|ref|YP_004300928.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
65]
gi|312262843|gb|ADQ53099.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
65]
Length = 642
Score = 81.1 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 60/446 (13%), Positives = 126/446 (28%), Gaps = 60/446 (13%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ + F + + R +Q + + ++ ++ N
Sbjct: 137 KCRDDILYFAKYCAIIHLDHGVIG--INLRPYQKDMLRIMSEKRMSIHNL---------- 184
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R +GKTT + ++ +V LA+ + + L + + LLP+
Sbjct: 185 --SRQLGKTTATSVYPCHYVTFNEAKNVGILAHKASMSREVLERT-KQIIELLPD----- 236
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
P + S+ +++ S D I DE
Sbjct: 237 ------FLQPGIVEWNKGSIELEN------GCAISAYSSD-PDAVRGNSFALIYVDECGF 283
Query: 203 TP--DVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT---- 255
+ IL + + RN+ T N ++ ++ ++ +
Sbjct: 284 VEAWEDCWKAILPVISSGRNSKIVLTSTPNGMNHWYDLWQSAINGKSGFEPYEANWSAVK 343
Query: 256 -----RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID-----SFIPLNIIE-- 303
+ D + E GQF + +
Sbjct: 344 ERLYHSETDSFDDGISWTTNQIGSSSVEAFLQEHAGQFMGSAGTLITGFKLSKMTWTDIE 403
Query: 304 --EALNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVI----EHLFDWSKTDLRTT 356
E L R P+ D AE G D + + + ++ +K
Sbjct: 404 ATENLYRFKQPEVGHKYFACVDPAEGRGQDYSTIQIIDVTKYPYEQVAVYHSNKISHIMF 463
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
I L +Y + I+ N+ G L M + ++ R + ++ + +
Sbjct: 464 PRIIQRLAMEYNEAYVYIELNSVGLSVAKDLYMDLEYENMIIDSSRDLGMKQTKTTKAMG 523
Query: 417 HVKMADWLEFASL-INHSGLIQNLKS 441
+ D +E L INH + L++
Sbjct: 524 CSTLKDLIEKDKLRINHKQTVIELRT 549
>gi|311993161|ref|YP_004010027.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage CC31]
gi|284177999|gb|ADB81665.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage CC31]
Length = 610
Score = 80.7 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 54/447 (12%), Positives = 123/447 (27%), Gaps = 61/447 (13%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ + F + R +Q + + ++ + + N
Sbjct: 112 KCRDDIVYFAEKYCA-ITHIDYGTIKVQLRDYQRDMLRIMSSKRMTCCNL---------- 160
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R +GKTT+ A + + +V LA+ + L + + LLP+
Sbjct: 161 --SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DRTKQAIELLPD----- 212
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
P + S+ +D+ + I DE +
Sbjct: 213 ------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAVRGNSFAMIYIDECAF 259
Query: 203 TPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT---- 255
P+ L I + + R + T N ++ ++ +
Sbjct: 260 IPNFIDAWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWDAALSGKSGFEPYTAIWNSVK 319
Query: 256 ----RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP------LNIIE-- 303
+ D + + + E C +F + I ++ E
Sbjct: 320 ERLYNDQDMFDDGWQWSSQTISASSLEQFKQEHCAEFH-GTSGTLISGMKLANMDWTEVT 378
Query: 304 ---EALNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVIEH----LFDWSKTDLRT 355
+ P I D +E G D + + + + +
Sbjct: 379 PDNHGFYKFKEAQPERKYIAALDCSEGRGQDYHALHIIDITEPQWEQVGVLHSNSISHLI 438
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
+ + + +Y + I+ N+TG L M + + + ++ + +
Sbjct: 439 LPDIVHKYLMEYNEAPVYIELNSTGVSVAKSLYMDLEYENVICDSMVDLGMKQTKRTKAV 498
Query: 416 LHVKMADWLEFASLINHSG-LIQNLKS 441
+ D +E LI H +Q ++
Sbjct: 499 GCSTLKDLIEKDKLIIHHKATVQEFRT 525
>gi|154248423|ref|YP_001419381.1| hypothetical protein Xaut_4503 [Xanthobacter autotrophicus Py2]
gi|154162508|gb|ABS69724.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
Length = 457
Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats.
Identities = 54/408 (13%), Positives = 108/408 (26%), Gaps = 47/408 (11%)
Query: 85 GRGIGKTTLNAWLVL----WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
R GKT ++ + L+ E Q + + + + +
Sbjct: 27 SRQSGKTFTTTLEIVDDCFKAAVKTRRERWVILSRGERQAREAMEEGIKR--HAAAYQLG 84
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-E 199
F+ L +L S+ + P +++
Sbjct: 85 FKTAEYDWQGDEGSHKALEVTLPHGSRITAL---------PANPDTARGFSANVFLDEFA 135
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID-TRTV 258
I + +++ +TS P KFYEI + W R +D + V
Sbjct: 136 IHKDSKAIWGALFPVISKNGLR--LRVTSTPNGKGNKFYEIMTAADEVWSRHVVDIYQAV 193
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---REPCPDPY 315
P + + A D D+ E ++ + ++I + +P
Sbjct: 194 ADGLPRDIDELRAGLADD-DLWAQEYELKWLDEASAWL-SYDLISSCEDERAGDPALYQG 251
Query: 316 APLIMGCDIAEEGGDNTVVVLR----RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
+G DI D V+ + + + ++ ++ +YR
Sbjct: 252 GVCFVGRDIGR-RQDLHVIWVWEQVGDVLWERERIEQKRATFAEMDDAFDDIMVRYRVGR 310
Query: 372 IIIDANNTGARTC-DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL- 429
ID G + D G V VL + + L + E ++
Sbjct: 311 ACIDQTGMGEKVVEDAQRRWGSRVEGVLFTGPS---------KLVLATAGKERFEDRTVR 361
Query: 430 --INHSGLIQNLKSLKSFI-VPNTGELAIESKRVKGAKSTDYSDGLMY 474
L +L L+ E + D +
Sbjct: 362 ISEGDVALRSDLHKLRKVTSATGAPRFVAE----RDDDHADRTWAAFL 405
>gi|314121742|ref|YP_004063861.1| large terminase protein [Enterobacteria phage vB_EcoM-VR7]
gi|313151499|gb|ADR32555.1| large terminase protein [Enterobacteria phage vB_EcoM-VR7]
Length = 610
Score = 80.3 bits (196), Expect = 7e-13, Method: Composition-based stats.
Identities = 59/412 (14%), Positives = 115/412 (27%), Gaps = 70/412 (16%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
+ E Q+ + F + R +Q + +E++
Sbjct: 100 IKWTKEMVQEWK------RCRDDIVYFAETYCA-ITHIDYGTIKVQLRDYQRDMLEIMHK 152
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ N R +GKTT+ A + + +V LA+ + L
Sbjct: 153 KRMTVCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL 200
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + LLP+ P S+ ++ +D+ +
Sbjct: 201 -DRTKQAIELLPD-----------FLQPGISEWNKGNITLDNGSTIGAY-------ASSP 241
Query: 185 VGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
I DE + P+ L I ++ I+T+ P L FY+I+
Sbjct: 242 DAVRGNSFAMIYIDECAFIPNFVDAWLAIQPVISS-GRRSKIIITTTPNGL-NHFYDIWT 299
Query: 243 KPLDDWKRFQID-----------TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
++ F+ + D + + E QF Q
Sbjct: 300 AAIEKKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASTLEQFNQEHGAQF-QG 358
Query: 292 DIDSFIP------LNIIEEA-----LNREPCPDPYAPLIMGCDIAEEGG-DNTVVVL--- 336
+ I ++ I R PDP I D +E G D + +
Sbjct: 359 TSGTLISGMKLAIMDWIRSMPENGYFYRYKKPDPERKYIASLDCSEGRGQDYHALHIIDV 418
Query: 337 -RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
+ ++ + + + +Y + I+ N+TG L
Sbjct: 419 TDEKWEQVAVLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSL 470
>gi|332185581|ref|ZP_08387329.1| terminase-like family protein [Sphingomonas sp. S17]
gi|332014559|gb|EGI56616.1| terminase-like family protein [Sphingomonas sp. S17]
Length = 436
Score = 80.0 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 62/430 (14%), Positives = 121/430 (28%), Gaps = 48/430 (11%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E +E + + P + I AGRG GKT A V L PG + +
Sbjct: 34 RELVERWELWAHDGQVAPPGDWRVWLIRAGRGFGKTRAGAEWVSALARDNPGARIALMGA 93
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ ++ + S L++ + +G + + T
Sbjct: 94 TLRDVERVMVRGESGLLAVARKGEAPKW------------------IGSLGQVHFTSGAI 135
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
A DE L + ++T+ PR
Sbjct: 136 GFAYSAAAPEALRGPQHHAAWCDELGKWKGEAGWDNLMMTLRLGEHPRVLVTTTPRATPL 195
Query: 236 KFYEIFNKPLDDWKRFQID-TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ I T + SF + ++++YG D+ + R E+ G+
Sbjct: 196 MRKVMALPD----CVETIGRTSDNAHLPDSFQDAMLSQYG-DTRLGRQELDGEMVDDREG 250
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCD-IAEEGGDNTVVVL----RRG-PVIEHLFDW 348
+ +++ R +++G D A GD +V R G +
Sbjct: 251 ALWTRALLD--RQRVKTVPALDRVVVGVDPPATSSGDACGIVAVGLGRDGHGYVLEDASE 308
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
+ +++G + R D ++ + N G L + + L
Sbjct: 309 AGLSPEGWAARVAGCARRNRADRVVAERNQGGDMVESVLRLADPTLPVHLVYASIGKAAR 368
Query: 409 CRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
+ L+ + W + L ++ P S D
Sbjct: 369 -AEPVSFLYAQGRVWHARG-FPALEDELCGLGVAGAYDGP--------------GHSPDR 412
Query: 469 SDGLMYTFAE 478
+D L++ E
Sbjct: 413 ADALVWALTE 422
>gi|332560992|ref|ZP_08415310.1| hypothetical protein RSWS8N_18139 [Rhodobacter sphaeroides WS8N]
gi|332274790|gb|EGJ20106.1| hypothetical protein RSWS8N_18139 [Rhodobacter sphaeroides WS8N]
Length = 468
Score = 80.0 bits (195), Expect = 9e-13, Method: Composition-based stats.
Identities = 54/436 (12%), Positives = 112/436 (25%), Gaps = 37/436 (8%)
Query: 85 GRGIGKTTLNAWLVLWLMST----RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
R GKT + T + L+ E Q + + + +
Sbjct: 33 SRQTGKTFSTCGECVDACFTAWKDDRRTRWVILSRGERQAAEAMTEVIKPFTRAFYEVYN 92
Query: 141 FEMQSLSLHPAPWY----SDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
++ + ++ + + P I+
Sbjct: 93 TLVKGGEPRFEEGEFRAPQEKGPDAVYKALEVAFPNGSRITAL-PANPDTARGFSANVIL 151
Query: 197 ND-EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
++ I + +++ I T N + KFYE+ W R +D
Sbjct: 152 DEFAFHAKSREIWAALFPVISKGGQKLRVISTPNGKG--NKFYELMTAEGSVWSRHVVDI 209
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP--LNIIEEALNREPCPD 313
++ D D E ++ + ++ E P
Sbjct: 210 HEAVRQGLDRDIDMLRAGMADEDAWAQEYELKWLDEANAWLDYDLISACEHPAAGMPGLY 269
Query: 314 PYAPLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P +G DIA D V+ + + + + + ++ + ++R
Sbjct: 270 MGGPCFVGVDIA-ARNDLFVIWVLELVGDVLWTREVIARRRVSFQEQDRLLAEVFRRFRV 328
Query: 370 DAIIIDANNTGA-RTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA- 427
ID G D G V +L + +L + + ++
Sbjct: 329 VRCRIDQTGMGEKPVEDAKRAHGDRVEGILFSAAN---------KLDLATGLKESMQDRK 379
Query: 428 -SLI-NHSGLIQNLKSLK-SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF-AENPPRS 483
L L +L ++K + T L + D L A
Sbjct: 380 TRLPAGDPVLRADLHAIKSQVGISGTRRLVADG---DTDGHADRFWALALAASAGKLTYQ 436
Query: 484 DMDFGRCPSYQYEGVD 499
D+ P + + D
Sbjct: 437 PFDYQAVPRHGGDDFD 452
>gi|317152051|ref|YP_004120099.1| hypothetical protein Daes_0328 [Desulfovibrio aespoeensis Aspo-2]
gi|316942302|gb|ADU61353.1| protein of unknown function DUF264 [Desulfovibrio aespoeensis
Aspo-2]
Length = 428
Score = 80.0 bits (195), Expect = 9e-13, Method: Composition-based stats.
Identities = 42/351 (11%), Positives = 90/351 (25%), Gaps = 43/351 (12%)
Query: 67 LNSVNNPNPEVFKGAISAGRG-IGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTT 123
+ + ++ GKT L+ ++ T R +A Q KT
Sbjct: 9 RAHQAKIETGLARFSVLVCHRRFGKTVLSVNRLIRAARTTSRTDWRGAYIAPLYKQAKTV 68
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
+W E+ ++ L + + L +
Sbjct: 69 VWDELKRYCGLGLDGCTVKFNETELRAD------------------FDNGARIRLFGAEN 110
Query: 184 FVGHHNTYGMAIINDEASGTPDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
Y + DE + P + I L++R +I T + + ++
Sbjct: 111 PDSLRGMYLDGAVFDEVAQMPHRVWTEVIRPALSDRMGWAMFIGTPRGKNALYRLWQDAR 170
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL--- 299
+ DW I+P + E F ++
Sbjct: 171 R-DPDWFAAMYRASQTGIIEPGELAAAAREMSPEE--YEQEFECSFTAAIRGAYFSALIG 227
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR---GPVIEHLFDWSKTDLRTT 356
+ + DP P+ D+ D+T + + G + + +
Sbjct: 228 EADKGGRITKVPHDPSLPVHTAWDLGMS--DSTAIWFVQARPGNAFAIVDYYEASG--EG 283
Query: 357 NNKISGLVEKYRPDA--------IIIDANNTGARTCDYLEMLGYHVYRVLG 399
+ + ++++ R I + TG + LG
Sbjct: 284 LDHYARVLDERRYAYGSHIAPHDIRVRELGTGKSRLEIARALGIRFDIAPN 334
>gi|262194129|ref|YP_003265338.1| hypothetical protein Hoch_0830 [Haliangium ochraceum DSM 14365]
gi|262077476|gb|ACY13445.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365]
Length = 503
Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 62/505 (12%), Positives = 132/505 (26%), Gaps = 92/505 (18%)
Query: 9 PETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLN 68
+ EQ+L D W + ++ LE +Q+ F+
Sbjct: 32 KKNEQELSD--WLANEWGFLAGLAKF----DDEPVTLER------YQMAFLRNRSRFRW- 78
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
++ R +G + + A L R + + ++ + K +
Sbjct: 79 -------------VTKSRQVGFSFVFALEALARCHLRDKHTAVFVSYNLEDAKEKVL-IA 124
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH 188
+ LP + + S + S+ + L S
Sbjct: 125 RQIHEELPLAYQKRLVVDSKTELAFESNSSNKRL--------------SRIISAPSKAPR 170
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
G +++ A D L R ++ S P G F+EI + L +
Sbjct: 171 GKKGDVYLDELAHYVLDREVYTGSTALILR-SHGQLSSCSTPLGRRGIFWEISTEELRKY 229
Query: 249 KRFQ---IDTRTVEGIDPSFHEGIIARYGLDSDV---------------------TRVEV 284
+ + + ++ + E
Sbjct: 230 PHHTRDEVPWWRCRFFCLDIDRAMREAPHMPTEERVAAFGTQAIVQQLDSLPLEDFQQEF 289
Query: 285 CGQFPQQDIDSFIPLNIIEEALNRE--------PCPDPYAPLIMGCDIAEEGG-DNTVVV 335
F + S+ P +I + + P+P ++ G D+ V
Sbjct: 290 ECSFVDE-SYSYYPYELILPCTSEDLVPAGDFTDLPEPEGRIVAGFDVGRTRDRSELAVF 348
Query: 336 LRRG--PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH 393
G V L + + + +++ + ID + G + L
Sbjct: 349 EDTGGHFVCRLLRRYDQVPFAEQEADLRRFLDRVPVARLSIDQSGIGMHLAENLARDYAQ 408
Query: 394 VYRVLGQKRAVDLEFCRNRRTELHVKMADWL---EFASLINHSGLIQNLKSLKSFIVPNT 450
V + N E L + +L L+ + S+K V +
Sbjct: 409 VVG----------DTFTNDNKERWATDLKILFQRKDIALPRDRELVGQIHSIKR-RVLPS 457
Query: 451 GELAIESKRVKGAKSTDYSDGLMYT 475
G++ +++R D +
Sbjct: 458 GKVGFDAERSTRGGHADRFWAIALA 482
>gi|123441982|ref|YP_001005965.1| terminase, ATPase subunit [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122088943|emb|CAL11753.1| probable terminase, ATPase subunit [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 572
Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 58/469 (12%), Positives = 114/469 (24%), Gaps = 46/469 (9%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA-- 114
F + + H + + I R IG T + L + A
Sbjct: 120 RFYDGLYEHQKRWYKAKSLAITIRNILKSRQIGATWYFSREALIDALETGRNQIFLSASR 179
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL-HPAPWYSDVLHCSLGIDSKHYSTMC 173
Q K + ++ L L + + + Y
Sbjct: 180 AQAHQFKRFIIKFAAEVGVELKGDPIMLSNGAELHFLGTSAASAQSYTGNLYFDEYFWTS 239
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN--RFWIMTSNPR 231
+ + + +S + + R I ++
Sbjct: 240 NFINLRSVAAGMATQTGLIETYFSTISSEEHEAYCFWSGELFNDGRKKADRVNIDITHKN 299
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+GK + + G D + +IA+ D Q
Sbjct: 300 LKNGKI----CADRQWKQIVTVKDAAALGFDRIDVDDLIAKKSPDE--FNNLYMCQPITN 353
Query: 292 DIDSFIPLNIIEEALNRE------------PCPDPYAPLIMGCDIAEEGG--DNTVVVL- 336
F +I ++ P P +P+ +G D EG D+ +V
Sbjct: 354 GERPFSYSELINCGVDGWNAGVWDDWRPYSPRPLGNSPVWIGYDPNGEGDGGDSAGLVAI 413
Query: 337 ------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
+ +I + ++Y I ID G +
Sbjct: 414 APPQVDGGKFRVLEAIQLRGMPFELQAEEIRKMTQRYNVQFIGIDGTGIGGAVHSLVLKF 473
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL---IQNLKSLKSFIV 447
+ + ++ L +K + +GL Q+ +++ V
Sbjct: 474 FPTAVKFVYSIS---------VKSALVLKAQMVMRRGRFEYDAGLSVIAQSFMTIRK-SV 523
Query: 448 PNTGELAIESKRVKGAKSTDYSDGLMYTFA-ENPPRSDMDFGRCPSYQY 495
G S R KGA D + +M+ E G ++
Sbjct: 524 TPGGMTTYTSDRSKGASHGDVAWAIMHALQNEPIGAETGSTGGGFVQEF 572
>gi|219871085|ref|YP_002475460.1| prophage MuMc02, terminase, ATPase subunit, putative/putative DNA
packaging protein Gp17 [Haemophilus parasuis SH0165]
gi|219691289|gb|ACL32512.1| prophage MuMc02, terminase, ATPase subunit, putative/putative DNA
packaging protein Gp17 [Haemophilus parasuis SH0165]
Length = 411
Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 57/413 (13%), Positives = 107/413 (25%), Gaps = 48/413 (11%)
Query: 85 GRGIGKTTLNAWLVLWLMS----TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
R GKT ++ + L+ E Q K + V + L +
Sbjct: 3 ARQTGKTFTTTLEIVLDCLEAEANGERTRWVILSRGERQAKEAMNEGVKRHLEAM----- 57
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-E 199
+ P+ D +L + + P +++
Sbjct: 58 --GIVCEVLEVPFKEDTTINAL----EVIFPNGSKITAL-PANPDTARGFSANVFLDEFA 110
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-PLDDWKRFQID-TRT 257
I + ++ + S P KFYE+ ++W R +D +
Sbjct: 111 FHQDSREIWKALFPVISAG---WKLRVVSTPNGKGNKFYELMTDLNNNEWSRHSVDIYQA 167
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF--IPLNIIEEALNREPCPDPY 315
V P E + D D E ++ + ++ +E + P
Sbjct: 168 VADGLPRNVEQLRVGLN-DEDAWAQEFELKWLDEASSWLSYDLIDGVEHSHAGIPFHYTG 226
Query: 316 APLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
P +G DI D ++ + + + T + ++ + +YR
Sbjct: 227 NPCFVGVDIG-VRNDLFIIWVIELVGDVFWTREITALKRASFATQDAELDRVFAEYRVLR 285
Query: 372 IIIDANNTGA-RTCDYLEMLG-YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
ID G D G Y V V+ + + L + E L
Sbjct: 286 CCIDQTGLGEKPVEDAKRRFGEYRVEGVIFTQTN---------KMMLATLGKEVFEDKRL 336
Query: 430 IN---HSGLIQNLKSLKSFI-VPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
L ++L LK E D +
Sbjct: 337 RIPQGDKALREDLHKLKKVTGANGQPRFVAERDSQ---GHADRTWACFLALYA 386
>gi|238695035|ref|YP_002922229.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
JSE]
gi|220029171|gb|ACL78106.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
JSE]
Length = 607
Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 51/463 (11%), Positives = 122/463 (26%), Gaps = 64/463 (13%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
PE + + F + R +Q + ++++
Sbjct: 98 TQYTPEMIAEWK------RCRKDIVYFAETYCA-ITHIDYGTIKVQLRDYQKDMLKIMHE 150
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ +++ R +GKTT A + + +V LA+ + L
Sbjct: 151 NRMSAHKL------------SRQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGSMAVEVL 198
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + LLP+ P + S+ +++ +
Sbjct: 199 ERT-KQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSIGAY-------ASSP 239
Query: 185 VGHHNTYGMAIINDEASGTP--DVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIF 241
I DEA+ L I + + R + T N ++
Sbjct: 240 DAVRGNSFSFIYIDEAAFISAWQDAWLAIQPVISSGRESKLIMTTTPNGLNHFYDIWQSA 299
Query: 242 NKPLDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ ++ +V + D + A G + E +F
Sbjct: 300 IDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHNAEFFGSSG 359
Query: 294 DSFIPLNII---------EEALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVI 342
+ + + P + D + + ++
Sbjct: 360 TLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITEFP 419
Query: 343 EHLFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
++ + + + + Y + I+ N+TG L M + +
Sbjct: 420 YKQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGVSIAKSLAMDLEYDNIICD 479
Query: 400 QKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI + IQ L++
Sbjct: 480 SFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRT 522
>gi|78212008|ref|YP_380787.1| hypothetical protein Syncc9605_0456 [Synechococcus sp. CC9605]
gi|78196467|gb|ABB34232.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 414
Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/299 (13%), Positives = 81/299 (27%), Gaps = 27/299 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+++GR GKT + +L G + LA + Q K W ++ + +
Sbjct: 25 VNSGRRFGKTRMALTWLLEGALLTSGSRMWFLAPTRVQAKQIAWRDLKEMVPGSWASQVR 84
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
E + + + + + + D+ G
Sbjct: 85 ESTLT---------------IELRNGSHI---QLAGADYADSLRGQRADRFAIDEYCYIR 126
Query: 202 GTPDVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
++ +L L T + + + T + + W R+ +
Sbjct: 127 DLQEMWQAALLPMLGTSDDGSVIFSSTPAGGGTFSAELWERAETAEGWARWNFPSVAGGW 186
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
+ P + E D + R E G + N N D PL++
Sbjct: 187 VKPEYVEQARQTM--DPSLWRQEFFGSIESLLGAVYPAFNQ----QNISDTVDNGGPLLV 240
Query: 321 GCDIAEEGGDNTVVVL-RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
GCD V+ + V+ + D R + + R D
Sbjct: 241 GCDFNRSPFCGCVLQVQGDVVVVLEEIVLIEADTREFALAVRERYPQ-RMIHCAPDPTG 298
>gi|291334416|gb|ADD94071.1| hypothetical protein GobsU_33659 [uncultured phage
MedDCM-OCT-S04-C1035]
gi|291334470|gb|ADD94124.1| hypothetical protein GobsU_33659 [uncultured phage
MedDCM-OCT-S04-C1161]
Length = 223
Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/244 (12%), Positives = 67/244 (27%), Gaps = 28/244 (11%)
Query: 102 MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
MS +A + Q K+ W + ++ + +PN + E + P
Sbjct: 1 MSKLKNPRFAYIAPTFKQAKSIAWDYMKQFTAKIPNTKFNETELRVDLPN---------- 50
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNA 220
+ + G Y + DE + + I L++R
Sbjct: 51 -----------GSRITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALSDRKG 99
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+I T + +DW ++ + +DP E G
Sbjct: 100 YCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASDTKIVDPEELEKAKEVMGE--KKY 157
Query: 281 RVEVCGQFPQQDIDSFIPLNII---EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
E + + I ++ DP P+ D+ ++++ +
Sbjct: 158 LQEFECDWIANIEGAIYGEEIAKIEDKNQIARVPYDPTLPVSTAWDLG-VADHSSIIFFQ 216
Query: 338 RGPV 341
+
Sbjct: 217 QKEQ 220
>gi|167647878|ref|YP_001685541.1| hypothetical protein Caul_3918 [Caulobacter sp. K31]
gi|167350308|gb|ABZ73043.1| protein of unknown function DUF264 [Caulobacter sp. K31]
Length = 439
Score = 79.6 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 58/404 (14%), Positives = 113/404 (27%), Gaps = 58/404 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GKT A + +PG ++ + + ++ + S SL +
Sbjct: 71 GGRGAGKTFAGASWIANQA--KPGRNLALVGPTFHDVREVMIEGPSGIKSLYLPGDRPKW 128
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q+ + A DE
Sbjct: 129 QASRRRLE------------------FRNGAIAQAFSAEDPDALRGPQFHAAWADEFCAW 170
Query: 204 P-DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
P L +L F + ++T+ PR + + + + +
Sbjct: 171 PKPAETLAMLRFGLRLGTDPRLVVTTTPR--PIRALRNLIAEPGAVQTRAPTSANADHLA 228
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
P+F + YG + + E+ G + + F ++ R P + +++
Sbjct: 229 PAFLSTLRGLYG-GTRLAAQELDGLIVEGEGGLFRAEDLARC---RGAPPAAFDRVVVAI 284
Query: 323 DI-AEEGGDNTVVVL--RRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
D A GD +V+ R G L + ++ DA++ +AN
Sbjct: 285 DPPATATGDACGIVVCGRFGDRAFVLADRTAKGLSPNGWARRAVDAAVRFDADALVAEAN 344
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD---WLEFASLINHSG 434
G L L + R E + + + +
Sbjct: 345 QGGDMVRSVLAQAAPPCPVKLVKASVGKRA-----RAEPVAALYEQGRVVHCGAFP---A 396
Query: 435 LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
L + L +L +G S D +D L++ +E
Sbjct: 397 LEEELMAL------GSG---------DLGHSPDRADALVWALSE 425
>gi|85375635|ref|YP_459697.1| Phage DNA packaging protein [Erythrobacter litoralis HTCC2594]
gi|84788718|gb|ABC64900.1| Phage DNA Packaging Protein [Erythrobacter litoralis HTCC2594]
Length = 450
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 68/448 (15%), Positives = 130/448 (29%), Gaps = 50/448 (11%)
Query: 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS 103
L+ P + + + P I AGRG GKT A V +
Sbjct: 26 DLDKALQPHEYNALAHWHWEVWGRDEQQPPEGPWRVWLICAGRGFGKTRAGAEWVRNVAR 85
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
+ + S ++++ + S L+ P E + SL W +
Sbjct: 86 HDGEARIALVGASLVEVRSVMVEGESGVLAASPGALAPEFEP-SLRRLQWPNGAQAF--- 141
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG-----FLTER 218
DE + + +
Sbjct: 142 --------------LYSAGEPESLRGPQHTHAWCDEIAKWDNAGLRALAAWDNLQMGMRL 187
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDS 277
+ + T+ PR ++ Q T G+ P+ + E ++ +YG S
Sbjct: 188 GDHPRVLATTTPRTVALMQRLYAEVESGAVVLAQGKTEDNAGVLPTAYFEAMLDQYGATS 247
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL- 336
+ R E+ G+ ++ + ++E+ + ++ A GD +V+
Sbjct: 248 -LGRQELEGEMLEEVDGALWSRALLEQCRTAGTGAERIRVVVGVDPPASSSGDACGIVVA 306
Query: 337 ---RRGPV-IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
G + K T +S + ++ D I+ +AN GA L
Sbjct: 307 AKLNDGNAEVLADCSVEKASPETWARAVSNAAKAWQVDRIVAEANQGGAMVRSVLHAANV 366
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADW--LEFASLINHSGLIQNLKSLKSFIVPNT 450
+ L R E + + + A L+ + L L L +
Sbjct: 367 SLPVKLVHASRGKAA-----RAEPVAALYEAGRVRHAGLL--AKLEDELCGL----MAGG 415
Query: 451 GELAIESKRVKGAKSTDYSDGLMYTFAE 478
G E +S D +D L++ +E
Sbjct: 416 G---YEGP----GRSPDRADALVWALSE 436
>gi|332533822|ref|ZP_08409678.1| phage terminase, ATPase subunit [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036753|gb|EGI73216.1| phage terminase, ATPase subunit [Pseudoalteromonas haloplanktis
ANT/505]
Length = 382
Score = 79.2 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/365 (9%), Positives = 92/365 (25%), Gaps = 34/365 (9%)
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ + + S + + + S + H +
Sbjct: 17 MVLNLAGGKTVKLIFKSTNARTAQSESGDLYIDEVFWIPKYKSLRGLAQAMATHKHLRIT 76
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
+ + + + + G + + + +
Sbjct: 77 YFSTPSVTSHEAYDHW-NGKWYRKTKACNDPEFAIDVSHKSLKNGRLCDDGIWRQMLTVY 135
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
G D + Y +D +F +F L + +
Sbjct: 136 DVVTSGFDRIDIGVLENEYSVDE--FNNLFMCKFIDDAHSAF-NLKQLMNCVGDSTKWPD 192
Query: 315 YA----------PLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNN 358
+ P+++G D A G +V +L ++ D S D +
Sbjct: 193 FDLDYERPYGLKPVVIGFDPARFGDKASVAILSAPMKPGEKFLLLEAIDLSGNDFEAMAS 252
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+I L EKY I +D G + + + + + + +
Sbjct: 253 EIKLLTEKYNVVHIGVDTTGIGYGVWELITKFYPNAEPIHYNPIIKNR---------MVI 303
Query: 419 KMADWLEFASLINHSG---LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K + ++ L + + +++ +V ++ + R D + +M+
Sbjct: 304 KAINVIQNRRLEFDQDAVNIASSFINIRRKVV--GDQITYATNRTATTGHADIAWAIMHG 361
Query: 476 FAENP 480
P
Sbjct: 362 LLFEP 366
>gi|323699495|ref|ZP_08111407.1| protein of unknown function DUF264 [Desulfovibrio sp. ND132]
gi|323459427|gb|EGB15292.1| protein of unknown function DUF264 [Desulfovibrio desulfuricans
ND132]
Length = 428
Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/344 (13%), Positives = 88/344 (25%), Gaps = 39/344 (11%)
Query: 67 LNSVNNPNPEVFKGAISAGRG-IGKTTLNAWLVLWLM--STRPGISVICLANSETQLKTT 123
E+ + A+ GKT L+ ++ + R +A Q KT
Sbjct: 9 REHQARIEAELGRFAVLVCHRRFGKTVLSVNRLINAARETRRDDWRGAYIAPLYRQAKTV 68
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
+W E+ ++ + + L +
Sbjct: 69 VWDELKRYCGFGLDGCTVKFNETELRAD------------------FDNGSRIRLFGANN 110
Query: 184 FVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
Y ++ DE + P V I L++R +I T + + +E
Sbjct: 111 PDSLRGMYLDGVVFDEVAQMPLRVWTEVIRPALSDRKGWAMFIGTPRGKNALYEIWEKG- 169
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP---L 299
K DW + E + E F ++
Sbjct: 170 KTDPDWLAAMYRASETGILPVEELEASAREMSPEE--YEQEFECSFTAAIRGAYFGQLLA 227
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR-----GPVIEHLFDWSKTDLR 354
+ E + DP P+ D+ D+T + + + ++ L
Sbjct: 228 DADREGRMTDVPADPSMPVHTAWDLGMS--DSTSIWFVQARPGGTFAVIDYYEACGEGLD 285
Query: 355 TTNNKISGLVEKYR----PDAIIIDANNTGARTCDYLEMLGYHV 394
+ KY P I + TG + LG
Sbjct: 286 HYARILDDKGYKYGTHIAPHDIRVRELGTGKSRLETARSLGIRF 329
>gi|299531659|ref|ZP_07045064.1| putative phage associated protein [Comamonas testosteroni S44]
gi|298720375|gb|EFI61327.1| putative phage associated protein [Comamonas testosteroni S44]
Length = 436
Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/335 (17%), Positives = 112/335 (33%), Gaps = 33/335 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++L + ++RP + V+C + +K ++ + ++ L +FE+
Sbjct: 39 GGRGGGKSWTVAAVLLVMAASRP-LRVLCTREIQKSIKQSVHQLLKDVITRLNLHAFFEV 97
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + D+ + +EA G
Sbjct: 98 LETEVR---------------GINGSLFLFSGLQSHTVDSIKSF--EGCDIVWVEEAHGV 140
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTRTVEGID 262
++ + + + + T NP + + Y+ F P D +I+ R
Sbjct: 141 SKKSWDTLIPTIRKEGSEIWL--TLNPDMETDETYQRFIATPSPDTWVVEINWRDNPWFP 198
Query: 263 PS-FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI---IEEALNREPCPDPYAPL 318
E A+ + +D G+ + + + + R+ DP P+
Sbjct: 199 RVLDEERRKAKRTMLADDYAHIWEGKARRVAAGAIYRHEMESVYLDNRARDVPYDPTLPV 258
Query: 319 IMGCDIAEEGGDNTVVVLR--RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
D+ + +V R + I + S L K+ L ++ D + D
Sbjct: 259 HTVWDLGWNDAMSIALVQRGPQDVRIIGHIEDSHRTLDWYVAKLEKLPYRWGTDYLPHDG 318
Query: 377 N----NTGARTCDYLEMLGYHVYRVLGQKRAVDLE 407
TG T L LG V+ Q RA D+E
Sbjct: 319 KTKNFQTGKSTEQLLRELGR--RSVMVQPRATDVE 351
>gi|85709622|ref|ZP_01040687.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
gi|85688332|gb|EAQ28336.1| Phage DNA Packaging Protein [Erythrobacter sp. NAP1]
Length = 441
Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 62/454 (13%), Positives = 122/454 (26%), Gaps = 74/454 (16%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGA------------ISAGRGIGKTTLNAWLVLWLMS 103
+ ++ N + + + A I AGRG GKT A V +
Sbjct: 17 RQLAAALNQEERNEFDYHWNMIARSAQLPPDGEWRVWLIMAGRGFGKTRAGAEWVRSIAE 76
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKWLSLLPN--KHWFEMQSLSLHPAPWYSDVLHCS 161
+ + +++S + + + S L+ P + FE +
Sbjct: 77 SHSEARIALVSSSLAEARAVMVEGESGLLACSPPDRRPEFEPSLRRVR------------ 124
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG-----FLT 216
DE P +
Sbjct: 125 --------FPNGAEAHLYSAGEPEALRGPQFSHAWCDEVGKWPISHSRATRAWDNLLMGL 176
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
+ +T+ PR + + + + T P+ IA
Sbjct: 177 RLGDDPRIAVTTTPRAVPLVQRLLKQETSQATAVTRGSTYDNSANLPARFLEAIADEFAG 236
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD-IAEEGGDNTVVV 335
S + R E+ G+ + + +++E++ E P + +++G D GD +V
Sbjct: 237 SQLGRQEIEGELIEDIEGALWSRSLLEQSKE-EAGPPGFRRIVIGVDPPTSSTGDECGIV 295
Query: 336 L-----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-- 388
+ + ++ ++ +R D II +AN G L
Sbjct: 296 VAALGEDNKAWVLADCSVARAQPEQWARAVAEAAHHWRSDRIIAEANQGGEMVESVLRAA 355
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM--ADWLEFASLIN--HSGLIQNLKSLKS 444
G V V + V R E + +D + A + L +
Sbjct: 356 DAGLPVKLVHASRGKV-------ARAEPVAALYASDRVRHAGNFPQLQDQMCGMLIGGEY 408
Query: 445 FIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+S D D L++ +E
Sbjct: 409 AGP---------------GRSPDRLDALVWALSE 427
>gi|262194298|ref|YP_003265507.1| hypothetical protein Hoch_1017 [Haliangium ochraceum DSM 14365]
gi|262077645|gb|ACY13614.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365]
Length = 478
Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 59/432 (13%), Positives = 121/432 (28%), Gaps = 66/432 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
++ R +G + + A L R + + ++ + K + + LP +
Sbjct: 54 VTKSRQVGFSFVFALEALARCHLRDKHTAVFVSYNLEDAKEKVL-IARQIHEELPLAYQK 112
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ S + S+ + L S G +++ A
Sbjct: 113 RLVVDSKTELAFESNSSNKRL--------------SRIISAPSKAPRGKKGDVYLDELAH 158
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD----------WKRF 251
D L R ++ S P G F+EI + L W R
Sbjct: 159 YVLDREVYTGSTALILR-SHGQLSSCSTPLGRRGIFWEISTEELRKYPHHTRDEVPWWRC 217
Query: 252 QIDTRTVEGIDPSFH----EGIIARYGLDSDV----------TRVEVCGQFPQQDIDSFI 297
+ ++ E +A +G + V + E F + S+
Sbjct: 218 RFFCLDIDRAVREAPHMPTEERVAAFGTQAIVQQLDSLALEDFQQEFECSFVDE-SYSYY 276
Query: 298 PLNIIEEALNRE--------PCPDPYAPLIMGCDIAEEGG-DNTVVVLRRG--PVIEHLF 346
P +I + + P+P ++ G D+ V G V L
Sbjct: 277 PYELILPCTSEDLVLAGDFTDLPEPEGRIVAGFDVGRTRDHSELAVFEDTGGHFVCRLLR 336
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ + + +++ + ID + G + L V
Sbjct: 337 RYDQVPFAEQEADLRRFLDRVPVARLSIDQSGIGMHLAENLARDYAQVVG---------- 386
Query: 407 EFCRNRRTELHVKMADWL---EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+ N E L + +L L+ + S+K V +G++ +++R
Sbjct: 387 DTFTNDNKERWATDLKILFQRKDIALPRDRELVGQIHSIKR-RVLPSGKVGFDAERSTRG 445
Query: 464 KSTDYSDGLMYT 475
D +
Sbjct: 446 GHADRFWAIALA 457
>gi|157311455|ref|YP_001469498.1| large terminase protein [Enterobacteria phage Phi1]
gi|149380659|gb|ABR24664.1| gp17 terminase DNA packaging enzyme large subunit [Enterobacteria
phage Phi1]
Length = 607
Score = 78.8 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/463 (11%), Positives = 125/463 (26%), Gaps = 64/463 (13%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
PE + + F + R +Q + ++++
Sbjct: 98 TQYTPEMIAEWK------RCRKDIVYFAETYCA-ITHIDYGTIKVQLRDYQKDMLKIMHE 150
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ +++ R +GKTT A + + +V LA+ + L
Sbjct: 151 NRMSAHKL------------SRQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGSMAVEVL 198
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + LLP+ P + S+ +++ +
Sbjct: 199 ERT-KQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSIGAY-------ASSP 239
Query: 185 VGHHNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIF 241
I DE + + L I + + R + T N ++
Sbjct: 240 DAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISSGRESKMIMTTTPNGLNHFYDIWQSA 299
Query: 242 NKPLDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ ++ +V + D + A G + E +F
Sbjct: 300 IDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHNAEFFGSSG 359
Query: 294 DSFIPLNII---------EEALNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRG---- 339
+ + + P + D +E G D + +
Sbjct: 360 TLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITEFP 419
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
++ + T + + + Y + I+ N+TG L M + +
Sbjct: 420 YKPVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGVSIAKSLAMDLEYDNIICD 479
Query: 400 QKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI + IQ L++
Sbjct: 480 SFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRT 522
>gi|83954308|ref|ZP_00963028.1| terminase, large subunit, putative [Sulfitobacter sp. NAS-14.1]
gi|83841345|gb|EAP80515.1| terminase, large subunit, putative [Sulfitobacter sp. NAS-14.1]
Length = 408
Score = 78.4 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 60/418 (14%), Positives = 107/418 (25%), Gaps = 63/418 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + V + + Q++ + S L+
Sbjct: 16 IMGGRGAGKTRAGAEWVRAQVEGSRPLDAGRCRRVALVGETIEQVREVMIFGDSGILACS 75
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P + ++ + G A
Sbjct: 76 PADRRPDWEATRKRL------------------VWPNGAVATVHTAHDPEGLRGPQFDAA 117
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + + L R + T+ R G + P
Sbjct: 118 WVDELAKWKKAEETWDQLQFALRLGEDPRACVTTTP--RNVGVLKNLLASPST-VTTHAP 174
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ SF E + ARY + + R E+ G + IE R+
Sbjct: 175 TEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEGALWTSERIEAGRVRDVPL- 232
Query: 314 PYAPLIMGCDIAEEGG---DNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKI 360
+++G D A G D +V+ V+
Sbjct: 233 -LDRIVVGLDPATTAGAGADECGIVVVGAQTQGPPQDWRAVVLADCTVQGATPSGWARAA 291
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+E+Y D ++ + N G + L + V + R E +
Sbjct: 292 ISAMEQYGADRLVAEVNQGGQMVAEVLRQVDPLVPVKSVHASRGKVA-----RAEPVAAL 346
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ ++ L + + G +G S D D L++ E
Sbjct: 347 YEQGRVGHVVGLDALEDQMC-----RMTARGY--------EGGGSPDRVDALVWALHE 391
>gi|229605025|ref|YP_002875724.1| hypothetical protein P087_gp56 [Lactococcus phage P087]
gi|227826008|gb|ACP41732.1| hypothetical protein [Lactococcus phage P087]
Length = 578
Score = 78.0 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 64/465 (13%), Positives = 130/465 (27%), Gaps = 85/465 (18%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ G G GK+ +++ L G + A + +L + ++ E+ ++ P
Sbjct: 100 ISCILGTGFGKSFVSSQCNLVRA--NRGELITAFAPN-RELNSVIFKEMVSAVNHSPKLK 156
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
++ S A G H++ M DE
Sbjct: 157 KVLFEAESKEEALQRGVSQKRFAFPSGGFV-------DLTIAKNATGVHSSSYM----DE 205
Query: 200 ASGTPDVINLGILG----FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
+ G ++ + TSNP ++ + ++ PL +
Sbjct: 206 YALLTKEEYNLAEGRAYAYVDKDGKPGKIFKTSNPHIMNFSYDDMIRNPLPPHEAVLWGD 265
Query: 256 RTVEGIDPSFHEGIIARYGL----------------------------------DSDVTR 281
+ + F E + ++ D D R
Sbjct: 266 WRLNIGEGKFMELVYSQLDDEHKYLKDKFPLNREERDYLLDQAIQQVIWSPFFNDEDNLR 325
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP- 340
+ +F +F ++ P + G D+A G D + L
Sbjct: 326 ILYLSEFGVNTESAFFTTT---PKIDDSPIDWDNSTFYAGNDVAIRGTDACIYALLEYNP 382
Query: 341 -----------VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-- 387
++ + ++ + IDA+ G + L
Sbjct: 383 NKSYSRIVAFNNVKPQLWIDHETPMEMAQNVIRQLKHDNARLLAIDASGVGEGQFNLLTT 442
Query: 388 --EMLGYHVYRVLGQKRAV------DLEFCRNRRTELHVKMADWLEFASLINHSG----L 435
V V A + N+R+EL + ++++ +L S L
Sbjct: 443 DDAETSCPVVPVRFGDGASKWRKDKNAVRSHNKRSELFLDFKEFIDTDTLRVTSEVWEFL 502
Query: 436 IQNLKSLKSFIVPNTGELAIESK---RVK-GAKSTDYSDGLMYTF 476
++++ ++ IE K + + G KSTDY D M
Sbjct: 503 QAEMQAVTKMSNDENKKIKIEPKDAIKKRLGGKSTDYLDSSMLAL 547
>gi|294661596|ref|YP_003580049.1| gp17 large terminase protein [Klebsiella phage KP15]
gi|292660757|gb|ADE35005.1| gp17 large terminase protein [Klebsiella phage KP15]
Length = 609
Score = 78.0 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 67/473 (14%), Positives = 135/473 (28%), Gaps = 70/473 (14%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
+ R T+Q L + + + + F + R +Q E +
Sbjct: 91 LKRAYIQTKWTQQMLMEWV---KCRDDIVYFAETYCA-ITHIDYGTIKVQLRDYQREMLI 146
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ + + A + R +GKTT+ A + + V LA+ +
Sbjct: 147 EMHKNRM------------VACNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMS 194
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
L + + LLP+ P + S+ +D+K
Sbjct: 195 AEVL-DRTKQAIELLPD-----------FLQPGIVEWNKGSIELDNKCKIGAF------- 235
Query: 181 PDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWI-MTSNPRRLSGKF 237
+ I DE + P+ L I ++ ++ I T N
Sbjct: 236 ASSPDAVRGNSFAMIYIDECAFIPNFIDAWLAIQPVISSGRKSKILITTTPNGLNHFYDI 295
Query: 238 YEIFNKPLDDWKRFQIDTRTVE------------GIDPSFHEGIIARYGLDSDVTRVEVC 285
+ + + + +V+ S+ +IA + E C
Sbjct: 296 WNAAIEGKSGFVPYTAIWTSVKERLYTDGDDGVFDDGYSWSSKMIASSSKE--AFLQEHC 353
Query: 286 GQFPQQDID----------SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG-DNTVV 334
+F + S++ + E + P I D AE G D +
Sbjct: 354 AEFMGTNGTLIAGWKLSKLSWVDTDETETNFYQYKAPVEGHKYIAVLDPAEGRGQDYHAM 413
Query: 335 VLRRGPVI----EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL-EM 389
+ + ++ +KT + + + Y + I+ N+TG L
Sbjct: 414 HIIDITSMPFEQVAVYHSNKTSHLILPDVLLRYLMMYNEAWVYIELNSTGHSVAKSLFSE 473
Query: 390 LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKS 441
L Y + + + + D +E L IN+ I ++
Sbjct: 474 LDYDNVICDSYNDLGMKQS-KRSKAIGCSTLKDLIEKDKLIINNKKTILEFRT 525
>gi|311992925|ref|YP_004009792.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Acj61]
gi|295815214|gb|ADG36140.1| gp17 terminase DNA packaging enzyme large subunit [Acinetobacter
phage Acj61]
Length = 611
Score = 77.6 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 61/463 (13%), Positives = 123/463 (26%), Gaps = 73/463 (15%)
Query: 13 QKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNN 72
Q++ D W + F + R +Q + + ++ +
Sbjct: 105 QEMIDE-WK-RCRDDVVYFAERYCA-ITHIDYGVIKVQLRDYQKDMLRIMSGN------- 154
Query: 73 PNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
+ ++S R +GKTT A + + SV LA+ + L +
Sbjct: 155 ------RMSVSKLSRQLGKTTAVAIFLAHYVCFNKAKSVGILAHKGSMSAEVL-DRTKQA 207
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ LLP+ P + ++ +D+ +
Sbjct: 208 IELLPD-----------FLQPGIVEWNKGNITLDNGSSIGAY-------ASSPDAVRGNS 249
Query: 192 GMAIINDEASGTP--DVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
I DE + + L I + + R++ T N + +
Sbjct: 250 FSLIYIDEVAFVQNWEDCWLAIQPVISSGRHSKIVMTTTPNGMNHFYTIWTAAVGKKSGF 309
Query: 249 KRFQIDT--------RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
++ + + D + A YG + R E G F +
Sbjct: 310 IPYESEWNAVKERLYDDNDEFDDGWSFSSKAIYGSSVEQFRQEHKGVFSGGSGTLISGMK 369
Query: 301 I------------IEEALNREPCPDPYAPLIMGCDIAEEGGDN----TVVVLRRGPV-IE 343
+ + + P P I D AE G + ++ +
Sbjct: 370 LSVLDHSEPININDDNTFFKFKEPSPERKYIATLDSAEGRGQDYHSLNIIDVTDDQWEQV 429
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART----CDYLEMLGYHVYRVLG 399
+ + + I + +Y I I+ N+TG LE
Sbjct: 430 AVLHSNTISHLILPDIILKHLIEYNEAPIYIELNSTGVSIAKTLYSDLEYENVICDSFND 489
Query: 400 QKRAVDLEFCRNRRTELHVKMADWLEFASLINH-SGLIQNLKS 441
+ + D +E L H I+ L++
Sbjct: 490 LGMKQTKRT----KAVGCSVLKDLIEKDKLKIHFRKTIEELRT 528
>gi|118475162|ref|YP_891824.1| hypothetical protein CFF8240_0649 [Campylobacter fetus subsp. fetus
82-40]
gi|261886523|ref|ZP_06010562.1| hypothetical protein CfetvA_16765 [Campylobacter fetus subsp.
venerealis str. Azul-94]
gi|118414388|gb|ABK82808.1| hypothetical protein CFF8240_0649 [Campylobacter fetus subsp. fetus
82-40]
Length = 523
Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats.
Identities = 57/449 (12%), Positives = 129/449 (28%), Gaps = 68/449 (15%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
+Q EF++ D + R IG + +++ L + L
Sbjct: 127 YQKEFLQSNDTFR--------------IVLKSRQIGFSYVSSADALIGAVAGRDQ--LFL 170
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
+ SE Q L + W + + D H + + + +
Sbjct: 171 SASEEQAL-ILMRYMRHWAKE--------------YGISFKKDSEHEVVLENGAYIKSFA 215
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + I DE + P+ + + + S P
Sbjct: 216 NNFRTVQGFAGD---------IWMDEFAWYPNPKRIWHAFVPSIGAIKGRLTILSTPFEE 266
Query: 234 SGKFYEIFNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
F++I++ + + +E E + + D+D QF
Sbjct: 267 RSLFHQIYSDKTKFHMFKRFCVSIYKAIEDGLDFDLETMRDLF--DTDTWASAYECQFVD 324
Query: 291 QDIDSFIPLNIIEEALNRE---PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEH--- 344
S + +++I+ ++ + P + G D+ +T+ + +
Sbjct: 325 D-ESSLLSISLIKSCVDNKAHYFTPKSSECIYAGYDVGRVSDRSTLAGVVLENGVYKTAL 383
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY-HVYRVLGQKRA 403
+ +K ++ ++ Y + ID G + + V V
Sbjct: 384 MDILAKARFEEQKEHLTSFLKTYPISVLKIDKTGIGMNLAENMHDKFKSRVSGVWFSNT- 442
Query: 404 VDLEFCRNRRTELHVKMADWLEF--ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVK 461
R+ E+ + + E + N LI ++ ++K I + ++KR +
Sbjct: 443 --------RKEEMALNLKKAFEDKLIKIPNDPLLIADIHAIKRTIGAKS--FKYDAKRNE 492
Query: 462 GAKSTDYSDGLMYTFAE-NPPRSDMDFGR 489
D L + R+ G
Sbjct: 493 YG-HADRFWALALALSHIGVVRAKKSGGA 520
>gi|33620526|ref|NP_891724.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
RB49]
gi|33347993|gb|AAQ15394.1| terminase DNA packaging enzyme large subunit [Enterobacteria phage
RB49]
Length = 607
Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats.
Identities = 50/463 (10%), Positives = 122/463 (26%), Gaps = 64/463 (13%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
PE + + F + R +Q + ++++
Sbjct: 98 TQYTPEMIAEWK------RCRKDIVYFAETYCA-ITHIDYGTIKVQLRDYQKDMLKIMHE 150
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ +++ R +GKTT A + + +V LA+ + L
Sbjct: 151 NRMSAHKL------------SRQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGSMAVEVL 198
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + LLP+ P + S+ +++ +
Sbjct: 199 ERT-KQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSIGAY-------ASSP 239
Query: 185 VGHHNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIF 241
I DE + + L I + + R + T N ++
Sbjct: 240 DAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISSGRESKMIMTTTPNGLNHFYDIWQSA 299
Query: 242 NKPLDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ ++ +V + D + A G + E +F
Sbjct: 300 IDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHNAEFFGSSG 359
Query: 294 DSFIPLNII---------EEALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVI 342
+ + + P + D + + ++
Sbjct: 360 TLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITEFP 419
Query: 343 EHLFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
++ + + + + Y + I+ N+TG L M + +
Sbjct: 420 YKQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGVSIAKSLAMDLEYDNIICD 479
Query: 400 QKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI + IQ L++
Sbjct: 480 SFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRT 522
>gi|6685017|gb|AAF23757.1|AF203974_1 terminase large subunit [Enterobacteria phage RB49]
Length = 607
Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats.
Identities = 50/463 (10%), Positives = 122/463 (26%), Gaps = 64/463 (13%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
PE + + F + R +Q + ++++
Sbjct: 98 TQYTPEMIAEWK------RCRKDIVYFAETYCA-ITHIDYGTIKVQLRDYQKDMLKIMHE 150
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ +++ R +GKTT A + + +V LA+ + L
Sbjct: 151 NRMSAHKL------------SRQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGSMAVEVL 198
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + LLP+ P + S+ +++ +
Sbjct: 199 ERT-KQAIELLPD-----------FLQPGIVEWNKKSIVLENGSSIGAY-------ASSP 239
Query: 185 VGHHNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIF 241
I DE + + L I + + R + T N ++
Sbjct: 240 DAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISSGRESKMIMTTTPNGLNHFYDIWQSA 299
Query: 242 NKPLDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ ++ +V + D + A G + E +F
Sbjct: 300 IDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHNAEFFGSSG 359
Query: 294 DSFIPLNII---------EEALNREPCPDPYAPLIMGCDI--AEEGGDNTVVVLRRGPVI 342
+ + + P + D + + ++
Sbjct: 360 TLIRATTLSRLSFIDVVNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITEFP 419
Query: 343 EHLFDWSKTDLRT---TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
++ + + + + Y + I+ N+TG L M + +
Sbjct: 420 YKQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGVSIAKSLAMDLEYDNIICD 479
Query: 400 QKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG-LIQNLKS 441
+ ++ + + + D +E LI + IQ L++
Sbjct: 480 SFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRT 522
>gi|213620832|ref|ZP_03373615.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 130
Score = 77.3 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 32/129 (24%)
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA-SLINH--SG 434
N GA + + + +F N + + +AD + IN+
Sbjct: 3 NAGAGVHEPDDEYN----------GIPNKDFFANLKAQAWWLVADRFRNTFNAINNGEQY 52
Query: 435 LIQNLKSL----------------KSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYT 475
L+ L S+ G + +ESK+ + S + +D +
Sbjct: 53 LVDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKKDLAKRDIPSPNVADAFIMA 112
Query: 476 FAENPPRSD 484
FA D
Sbjct: 113 FAPTDTSLD 121
>gi|84687436|ref|ZP_01015314.1| Putative large terminase [Maritimibacter alkaliphilus HTCC2654]
gi|84664594|gb|EAQ11080.1| Putative large terminase [Rhodobacterales bacterium HTCC2654]
Length = 426
Score = 77.3 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 63/437 (14%), Positives = 117/437 (26%), Gaps = 67/437 (15%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSET 118
L+ P + I GRG GKT A V +S V + +
Sbjct: 16 WALDHQLPPEGDWRTWVILGGRGAGKTRAGAEWVRAQVEGPAPLSPGRAGRVALIGETFD 75
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
Q++ + S ++ P ++ T +
Sbjct: 76 QVRDVMVFGDSGIVACAPPDRRPAWEATKRRL------------------VWPNGATATS 117
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
G A DE + D + L + ++T+ PR +
Sbjct: 118 FSASEPEGLRGPQFDAAWADELAKWKKVDDAWDMLQFALRL-GDHPRQVVTTTPRDV--P 174
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
T + SF E I ARYG + + R E+ G +F
Sbjct: 175 ILRRLLTLSSTVTTHAPTTANRANLAKSFLEEIEARYG-GTRLGRQELEGVLLDDREGAF 233
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLR----------RGPVIE 343
++E+ R P P + +++ D G D +V+ V+
Sbjct: 234 WSTAMLEDC--RIDGPPPLSRIVVAVDPPVTGHAGSDECGIVVAGAVTEGAPGAWRAVVL 291
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
+E+Y D ++ + N G + + V +
Sbjct: 292 EDASVKAAKPIDWARAALDAMERYGADRLVAEVNQGGDLVETVIRQIDPLVPYRGVRAAK 351
Query: 404 VDLEFCRNRRTELHVKMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVK 461
R E + + + + L +++ F +
Sbjct: 352 GKSA-----RAEPVAALYEQGRVSHLRGLGDLEDQMCLMTVQGF---------------E 391
Query: 462 GAKSTDYSDGLMYTFAE 478
G S D D L++ +
Sbjct: 392 GKGSPDRVDALVWALTD 408
>gi|221067857|ref|ZP_03543962.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
KF-1]
gi|220712880|gb|EED68248.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
KF-1]
Length = 434
Score = 77.3 bits (188), Expect = 6e-12, Method: Composition-based stats.
Identities = 53/329 (16%), Positives = 106/329 (32%), Gaps = 31/329 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A ++L + ++RP + V+C + +K ++ + ++ L +FE+
Sbjct: 39 GGRGGGKSWTVAAVLLVMAASRP-LRVLCTREIQKSIKQSVHQLLKDVIARLNLHAFFEV 97
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + D+ + +EA G
Sbjct: 98 LETEVR---------------GINGSLFLFSGLQSHTVDSIKSF--EGCDIVWVEEAHGV 140
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTRTVEGID 262
++ + + + + T NP + + Y+ F P D +I+ R
Sbjct: 141 SKKSWDTLIPTIRKEGSEIWL--TLNPDMETDETYQRFIATPCPDTWVVEINWRDNPWFP 198
Query: 263 PS-FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI---IEEALNREPCPDPYAPL 318
E A+ + +D G+ + + + + R+ DP P+
Sbjct: 199 RVLDEERRKAKRTMLADDYAHIWEGKARRVAAGAIYRHEMESVYLDNRARDVPYDPTLPV 258
Query: 319 IMGCDIAEEGGDNTVVVLR--RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
D+ + +V R + I + S L K+ L ++ D + D
Sbjct: 259 HTVWDLGWNDAMSIALVQRGPQDVRIIGHIEDSHRTLDWYVAKLEKLPYRWGTDYLPHDG 318
Query: 377 N----NTGARTCDYLEMLGYHVYRVLGQK 401
TG T L LG V +
Sbjct: 319 KTRNFQTGKSTEQLLRELGRRSVMVQPRG 347
>gi|213026708|ref|ZP_03341155.1| putative prophage terminase large subunit [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 143
Score = 76.9 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 32/129 (24%)
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA-SLINH--SG 434
N GA + + + +F N + + +AD + IN+
Sbjct: 16 NAGAGVHEPDDEYN----------GIPNKDFFANLKAQAWWLVADRFRNTFNAINNGEQY 65
Query: 435 LIQNLKSL----------------KSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYT 475
L+ L S+ G + +ESK+ + S + +D +
Sbjct: 66 LVDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKKDLAKRDIPSPNVADAFIMA 125
Query: 476 FAENPPRSD 484
FA D
Sbjct: 126 FAPTDTSLD 134
>gi|254485756|ref|ZP_05098961.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
gi|214042625|gb|EEB83263.1| phage DNA Packaging Protein [Roseobacter sp. GAI101]
Length = 452
Score = 76.9 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 60/421 (14%), Positives = 110/421 (26%), Gaps = 69/421 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGIS---------VICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ S G V + + Q++ + S L
Sbjct: 60 IMGGRGAGKTRAGAE---WVRSMVEGARPLDAGRCRRVALVGETIEQVREVMIFGDSGIL 116
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ P + ++ S G
Sbjct: 117 ACSPADRRPDWEATRKRL------------------VWPNGAVASVHTAHDPEGLRGPQF 158
Query: 193 MAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + + L R + T+ R ++ P
Sbjct: 159 DAAWVDELAKWKKAEETWDQLQFALRLGEDPRVCVTTTP--RNVDVLKKLLASPST-VTT 215
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ SF E + ARY + + R E+ G + ++E R
Sbjct: 216 HAPTEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEGALWTSEMLE--RGRIE 272
Query: 311 CPDPYAPLIMGCDIAEE---GGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTN 357
+ +++G D A G D +V+ V+
Sbjct: 273 KLPTFDRIVVGVDPATTAGAGSDECGIVVVGAQTQGAPQNWRAVVLADCTAQGATPSGWA 332
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+E+Y D ++++ N G + L + V + R E
Sbjct: 333 RAAVSAMEQYGADRLVVETNQGGLMVGEVLRQIDPLVPLKSVHASRGKVA-----RAEPV 387
Query: 418 VKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
+ + + L + + + +G S D D L++
Sbjct: 388 AALYEQGRVGHVAGLVALEDQMCRMTARGFEGSG-------------SPDRVDALVWALH 434
Query: 478 E 478
E
Sbjct: 435 E 435
>gi|89054122|ref|YP_509573.1| hypothetical protein Jann_1631 [Jannaschia sp. CCS1]
gi|88863671|gb|ABD54548.1| protein of unknown function DUF264 [Jannaschia sp. CCS1]
Length = 483
Score = 76.9 bits (187), Expect = 7e-12, Method: Composition-based stats.
Identities = 57/433 (13%), Positives = 110/433 (25%), Gaps = 70/433 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWL 132
+ GRG GKT A W+ S G V + + Q + S +
Sbjct: 91 VLGGRGAGKTRAGAE---WVRSMVEGATPEAPGRAKRVALIGETYDQAMAVMVKGESGLI 147
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ P + +
Sbjct: 148 ACSPPDRVPRWIAGERKL------------------VWPNGAEAQVFSANDPEALRGPQF 189
Query: 193 MAIINDEASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
DE + P + R + I+T+ PR ++ +
Sbjct: 190 DLAWADELAKWPKAQETWDMLQFGLRLGQHPQQIVTTTPRNVN--VLKDLLARDGVAHTH 247
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ SF + +RYG D+ + R E+ G ++ I+E +
Sbjct: 248 APTEANSAYLADSFLTEVRSRYG-DTRLGRQELDGVLLDDVDNALWVRGAIDEGRLTDAP 306
Query: 312 PDPYAPLIMGCDI---AEEGGDNTVVVLR----------RGPVIEHLFDWSKTDLRTTNN 358
+I+ D G D +V+ V+ N
Sbjct: 307 --DVTRVIVAVDPPVTGHAGSDACGIVVVGIIERGDPAQWRAVVLEDCSVQGVSPNQWAN 364
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
++ ++ + N G D + + + + R E
Sbjct: 365 AAVAAYHRHGASRMVAEVNQGGVMVADTIRTVDPTINLRTVHASTGKVA-----RAEPVA 419
Query: 419 KMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + + A L H+ L + + G S D D L++ E
Sbjct: 420 ALYEQGKVAHLGTHAELEDEMCKMALTGYEGQG-------------SPDRVDALVWALTE 466
Query: 479 N---PPRSDMDFG 488
P ++ ++ G
Sbjct: 467 GMLVPAKTRLNPG 479
>gi|257460901|ref|ZP_05626002.1| transposase family protein [Campylobacter gracilis RM3268]
gi|257442232|gb|EEV17374.1| transposase family protein [Campylobacter gracilis RM3268]
Length = 518
Score = 76.9 bits (187), Expect = 9e-12, Method: Composition-based stats.
Identities = 66/439 (15%), Positives = 126/439 (28%), Gaps = 67/439 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+Q +F+ + R IG + +++ L G + +
Sbjct: 121 FDYQKDFLNDASQFR--------------IVLKSRQIGFSYVSSLDALLGAVA--GRNQL 164
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
L+ SE Q + L W L + D + +
Sbjct: 165 FLSASEEQAR-ILMNYSQMWAKKL--------------GVSFAKDSEYEKSLDNGATIRV 209
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
M + T G I DE + P+ + + + S P
Sbjct: 210 MAHNFR-----TVQGFTGD----IWMDEFAWYPNQKRIWHAFVPSIGAVAGRLTILSTPF 260
Query: 232 RLSGKFYEIFNKPLDDWK--RFQID-TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
+ F E+F L + R ++D R + G E + A + D+D QF
Sbjct: 261 EENSFFAELFGDELKFYMFSRHRVDIYRAMAGGLKFDLETMRALF--DADTWASAYECQF 318
Query: 289 PQQDIDSFIPLNIIEEALN--REPCPDPYAPLIMGCDIAEEGGDNT---VVVLRRGPVIE 343
+ + +++I+ ++ P P+ G D+ + V G
Sbjct: 319 VDD-ESALLGIDLIKSCVSDFTPTLPPKNIPVFSGYDVGRTKDRSVHMGVYDAGEGIKRL 377
Query: 344 HLF-DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY-HVYRVLGQK 401
L+ +K N ++ + + ID G + L+ V V
Sbjct: 378 CLYDVIAKASFEAQENLLTDFLRLNLLAYLKIDKTGIGMPVAERLKSRFTSRVSGVYFTA 437
Query: 402 RAVDLEFCRNRRTELHVKMADWLEF--ASLINHSGLIQNLKSLKSFIVPNTGELAIESKR 459
+ L + + E S+ N LI +L ++K + +S R
Sbjct: 438 S---------VKEALALNLKKHFEDKSISIPNDPLLIADLHAIKRKAGQKS--FLYDSDR 486
Query: 460 VKGAKSTDYSDGLMYTFAE 478
+ D L +
Sbjct: 487 NEHG-HADRFWALALALSY 504
>gi|262193957|ref|YP_003265166.1| hypothetical protein Hoch_0641 [Haliangium ochraceum DSM 14365]
gi|262077304|gb|ACY13273.1| protein of unknown function DUF264 [Haliangium ochraceum DSM 14365]
Length = 478
Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 62/504 (12%), Positives = 132/504 (26%), Gaps = 92/504 (18%)
Query: 9 PETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLN 68
+ EQ+L D W + ++ LE +Q+ F+
Sbjct: 7 KKNEQELSD--WLANEWGFLAGLAKF----DDEPVTLER------YQMAFLRNRSRFRW- 53
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
++ R +G + + A L R + + ++ + K +
Sbjct: 54 -------------VTKSRQVGFSFVFALEALARCHLRDKHTAVFVSYNLEDAKEKVL-IA 99
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH 188
+ LP + + S + S+ + L S
Sbjct: 100 RQIHEELPLAYQKRLVVDSKTELAFESNAANKRL--------------SRIISAPSKAPR 145
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
G +++ A D L R ++ S P G F+EI + L +
Sbjct: 146 GKKGDVYLDELAHYVLDREVYTGSTALILR-SHGQLSSCSTPLGRRGIFWEISTEELRKY 204
Query: 249 KRFQ---IDTRTVEGIDPSFHEGIIARYGLDSDV---------------------TRVEV 284
+ + + ++ + E
Sbjct: 205 PHHTRDEVPWWRCRFFCIDIDRAMREAPHMPTEERVAAFGTQAIAQQLDSLALEDFQQEF 264
Query: 285 CGQFPQQDIDSFIPLNIIEEALNRE--------PCPDPYAPLIMGCDIAEEGG-DNTVVV 335
F + S+ P +I + + P+P ++ G D+ V
Sbjct: 265 ECSFVDE-SYSYYPYELILPCTSEDLVLAGDFTDLPEPEGRIVAGFDVGRTRDHSELAVF 323
Query: 336 LRRG--PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH 393
+G V L + + + +++ + ID + G + L
Sbjct: 324 EDKGGHFVCRLLRRYDQVPFAEQEADLRRFLDRVPVARLSIDQSGIGMHLAENLARDYAQ 383
Query: 394 VYRVLGQKRAVDLEFCRNRRTELHVKMADWL---EFASLINHSGLIQNLKSLKSFIVPNT 450
V + N E L + L L+ + S+K V +
Sbjct: 384 VVG----------DTFTNDNKERWATDLKILFQRKDIVLPRDRELVGQIHSIKR-RVLPS 432
Query: 451 GELAIESKRVKGAKSTDYSDGLMY 474
G++ +++R D +
Sbjct: 433 GKVGFDAERSTRGGHADRFWAIAL 456
>gi|32453660|ref|NP_861869.1| large terminase protein [Enterobacteria phage RB69]
gi|32350479|gb|AAP76078.1| gp17 terminase DNA packaging enzyme, large subunit [Enterobacteria
phage RB69]
Length = 611
Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 61/447 (13%), Positives = 128/447 (28%), Gaps = 61/447 (13%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ + F + R +Q + ++++ + + N
Sbjct: 112 KCRDDIVYFAETYCA-ITHIDYGTIKVQLRDYQRDMLKIMSSKRMTVCNL---------- 160
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R +GKTT+ A + + +V LA+ + L + + LLP+
Sbjct: 161 --SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DRTKQAIELLPD----- 212
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
P + S+ +D+ + I DE +
Sbjct: 213 ------FLQPGIVEWNKGSIQLDNGSSIGAY-------ASSPDAVRGNSFAMIYIDECAF 259
Query: 203 TPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV- 258
P+ L I + + R + T N + + ++ + +V
Sbjct: 260 IPNFIDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVK 319
Query: 259 -------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP------LNIIE-- 303
+ D + R E F + + I L+ IE
Sbjct: 320 ERLYNDEDIFDDGWQWSKQTISASSLTQFRQEHTAAF-EGTSGTLISGMKLAILDYIEVT 378
Query: 304 ---EALNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVIEH----LFDWSKTDLRT 355
++ P+ I D +E G D + + + + +
Sbjct: 379 PDSHGFHQFKKPEEGHKYIATLDCSEGRGQDYHAMHIIDVTTDKWEQVGVLHSNTISHLI 438
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
+ + + +Y I I+ N+TG L M + + + ++ R +
Sbjct: 439 LPDIVFKYLMEYNECPIYIELNSTGVSVAKSLYMDLEYENVICDSMNDLGMKQSRRTKPV 498
Query: 416 LHVKMADWLEFASL-INHSGLIQNLKS 441
+ D +E L INH IQ ++
Sbjct: 499 GCSTLKDLIEKDKLKINHRATIQEFRT 525
>gi|116625333|ref|YP_827489.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
Ellin6076]
gi|116228495|gb|ABJ87204.1| hypothetical protein Acid_6278 [Candidatus Solibacter usitatus
Ellin6076]
Length = 260
Score = 76.5 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 44/274 (16%), Positives = 78/274 (28%), Gaps = 31/274 (11%)
Query: 42 GTPLEGFSAPR--SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
E P W + V N + ++ R GK+T+ A +
Sbjct: 12 PGKREIPQGPEIADWVRGTLGFEADATQARVLN--TRSKRVLLNCTRQWGKSTVTAARAV 69
Query: 100 WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
T+ I ++ + Q + E + L
Sbjct: 70 HEAVTKADSLTIAVSPTARQTGEFV--------------RKAEAFAGMLKMKVKGDGSNE 115
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM-AIINDEASGTPDVINLGILGFLTER 218
SL + P T + ++ DEAS D + + + L
Sbjct: 116 MSLAFPNGSRIV-------GLPGTEATVRGFSAVALLLVDEASRVEDDLYMAMRPMLAVS 168
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
+ + T +R G FYE + W+R + + E G
Sbjct: 169 GGTLWLMSTPWGKR--GFFYEAWANGGPTWERVSVKAEDCPRFGAEYLEEERRVMGE--R 224
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ R E C +F + F ++IE A + + P
Sbjct: 225 IYRQEYCCEFGESSSAVF-DRDLIEAAFSDDFGP 257
>gi|237745726|ref|ZP_04576206.1| phage terminase [Oxalobacter formigenes HOxBLS]
gi|229377077|gb|EEO27168.1| phage terminase [Oxalobacter formigenes HOxBLS]
Length = 414
Score = 76.5 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/250 (13%), Positives = 72/250 (28%), Gaps = 23/250 (9%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ GRG GK+ A + + +RP + V+C + ++ ++ + +S L W
Sbjct: 37 SARGGRGSGKSVHFARALTVISYSRP-VRVLCCREVQNTIRDSVHKLIGDQISALGLAPW 95
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
F + S+ + Y + + G +E
Sbjct: 96 FRITDSSIKS-------------SVGSEFIFKGLKYDPQGIKSTEGI-----DICWVEEG 137
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTRTVE 259
+ ++ + + N+ + + NP G Y+ F P D +++
Sbjct: 138 QTVSEESWSILIPTIRKENSEIWI--SWNPIDEDGPTYKRFVTAPPPDCYNAEVNYYDNP 195
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ + D G+ P D+ I + + L
Sbjct: 196 WFPDVLRKEMEYLKATDYAAYEHVWLGK-PLTVSDAVIFAGKYTVETFPDDLWEKADRLF 254
Query: 320 MGCDIAEEGG 329
G D
Sbjct: 255 FGADFGFARD 264
>gi|294011207|ref|YP_003544667.1| hypothetical protein SJA_C1-12210 [Sphingobium japonicum UT26S]
gi|292674537|dbj|BAI96055.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length = 437
Score = 76.5 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 59/404 (14%), Positives = 112/404 (27%), Gaps = 47/404 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AGRG GKT A V + + P + + + + + + S L++ P + +
Sbjct: 58 AGRGFGKTRAGAEWVRSVAESDPKARIALVGATLGEARAVMVEGASGILAVAPWWNR-PV 116
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ +L W + + DE +
Sbjct: 117 FAPALRKLVWPN-----------------GAVATLYGAAEAESLRGPQFSHGWADEIAKW 159
Query: 204 PDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
+ R + T+ PR + + D V +
Sbjct: 160 AGGQAAWDNLMMGMRLGGAPRVLATTTPRPVPLVRGLVARAGGDVVVTRGRTADNVAHLA 219
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
F + YG + + R E+ G+ ++ + +++E ++
Sbjct: 220 DGFLAAMERSYG-GTRLGRQELDGELIEEVEGALWSRDLLERCRVAHVRGGLTRVVVAVD 278
Query: 323 DIAEEGGDNTVVVL-----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
A GD +V+ R + SG + D ++ +AN
Sbjct: 279 PPASAHGDACGIVVVGLGEDRRAYVIADATVEGATPEGWARAASGAALVHGADRVVAEAN 338
Query: 378 NTGARTCDYLE--MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL 435
N GA L V V + V R E + + + L
Sbjct: 339 NGGAMVESVLRAAEAALPVRLVHASRGKV-------ARAEPVAALYEAGRVVHRGGFAEL 391
Query: 436 IQNLKSLKSFIVPNTGELAIESKRVKG-AKSTDYSDGLMYTFAE 478
L L + G + G +S D +D L++ E
Sbjct: 392 EDQLCGL----MLGGGYV--------GPGRSPDRADALVWGLTE 423
>gi|283780022|ref|YP_003370777.1| hypothetical protein Psta_2246 [Pirellula staleyi DSM 6068]
gi|283438475|gb|ADB16917.1| conserved hypothetical protein [Pirellula staleyi DSM 6068]
Length = 465
Score = 76.1 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 42/422 (9%), Positives = 104/422 (24%), Gaps = 74/422 (17%)
Query: 84 AGRGIGKTTLNAWLVLW---------LMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
GR GK+ + A + + +ST V A ++ Q + ++
Sbjct: 70 TGRRSGKSRIAAVIASYEAALAGRESRLSTGERGVVAVCAPTKYQARVV-----KDYIRG 124
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ + + + + + + +A
Sbjct: 125 CFTSPMLSGEVTQETQEGF-TLANGVRIAVLAGDW---------------RTIRGYTLLA 168
Query: 195 IINDEASGT----------PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I DEA+ + I L I S+P G ++ + +
Sbjct: 169 AIVDEAAFFGYDAESKVKSDTELIRAIKPGLATVGGK--LIAISSPYARKGWCFKTYQRN 226
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEG--IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ + + I D + E G+F F+P ++
Sbjct: 227 FGNNEGKTLVWNCPSKTMNPKLPQSVIDEALAEDLASAKAEYLGEFRDDVSL-FLPREVV 285
Query: 303 EEAL---NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG-PVIEHLFDWSKTDLRTTNN 358
+ + E P+ D++ D+ + + + L
Sbjct: 286 AKLVVPGRYELLPNQKHRYFGFADLSGGRSDDAALAIAHRESRVVVLDYLRVWKAPFNPQ 345
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+ + + + ++A ++EL+
Sbjct: 346 LVVLEMARDLKRFGLPRVTGDNYAAEFVNRAFRMEGINYFKSEKA---------KSELYG 396
Query: 419 KMADWLEFASLI--NHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKST-----DYSDG 471
++ L + ++ LI + L+ + G D ++
Sbjct: 397 ELLPRLCSGEIELLDNEKLISQIAGLER-RTRSGGR--------DIIDHPPNGHDDLANA 447
Query: 472 LM 473
+
Sbjct: 448 VA 449
>gi|256811476|ref|YP_003128845.1| hypothetical protein Mefer_1542 [Methanocaldococcus fervens AG86]
gi|256794676|gb|ACV25345.1| hypothetical protein Mefer_1542 [Methanocaldococcus fervens AG86]
Length = 531
Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/460 (11%), Positives = 119/460 (25%), Gaps = 70/460 (15%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-------TRPG 107
Q E ++ + + I AG+G GK + + L +++
Sbjct: 74 QKEILKGMAEY------------PTSIILAGKGSGKDFMVSLLFNYMLMKATLKENLYSR 121
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
++ + +A + + E W + + + S+ I
Sbjct: 122 VNFVNIAPNMELANKVFFKEFKHWFKKCLLWQAVGFEE-EKNTGKAPIRLTKTSVSIGDN 180
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG-----TPDVINLGILGFLTERNAN- 221
++S + + DE S + + T +
Sbjct: 181 IELVSGHSHS-------TSFEGMNVLCAVIDEISDENFYNAEKLFYQLLSSIKTRFGTDG 233
Query: 222 ----RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
W P L Y++F + + F +T E E Y +
Sbjct: 234 KLIVITWTRFPTPNPLDDVGYKLFIENQNIDNVFTFKGKTWEINPFRKKEDFADDYERNP 293
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
+ + + P FI + ++ + P + + + +
Sbjct: 294 ILAKKMYECEPPD-LDAYFIDVAKLDACM---VELVPLFQHRVVYKEGKAILEFKQIRSV 349
Query: 338 RGPVIEHLFDWSKTDLRTTNN--------KISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
P+ H K D +S ++E I+D ++L
Sbjct: 350 DVPIFAHFDLSLKHDSTAIAIAYTEGDKIIVSDIIEIQPTKNHIVDYKAV-EEFIEHLRK 408
Query: 390 LGYHVYRVLGQKRAVDLEFCRNRR---------TELHVKMADWLE--FASLINHSGLIQN 438
A + N + ++ ++ +E + + L
Sbjct: 409 HFTAYISFDQFNSAYFAQKFSNAKILNWSMPQQVKMWKELQKLIESQQIKIQKNEKLRLQ 468
Query: 439 LKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + ++ G KS D +D L+ E
Sbjct: 469 ILQHQV----EENKVKYF-----GEKSPDLADALIGAVYE 499
>gi|291334530|gb|ADD94183.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C1201]
gi|291334650|gb|ADD94297.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C695]
Length = 223
Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/244 (10%), Positives = 63/244 (25%), Gaps = 28/244 (11%)
Query: 102 MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
M +A + Q K+ W + ++ +P + L
Sbjct: 1 MCPHKNPRFAYIAPTFKQAKSIAWDYMKQFTDKIP-------------STKFNETELRVD 47
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNA 220
L ++ + + G Y + DE + + I L++R
Sbjct: 48 LPNGAR--------ITLLGAENSDGLRGIYLDGCVIDEYANIDGKLFAEIIRPALSDRKG 99
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
+I T + +DW ++ + +D + G
Sbjct: 100 YCVFIGTPAGMNNNFYDLYQHANGAEDWFNYKAKASETKIVDQEELDKAKEVMGE--KKY 157
Query: 281 RVEVCGQFPQQDIDSFIPLN---IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
E + + + ++ DP P+ D+ ++++
Sbjct: 158 LQEFECDWIANIEGAIYGEEIAKLDDKKQLARVPYDPTLPVSTAWDLG-VADHSSIIFFN 216
Query: 338 RGPV 341
+
Sbjct: 217 KKVR 220
>gi|261885730|ref|ZP_06009769.1| hypothetical protein CfetvA_11664 [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 560
Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 63/463 (13%), Positives = 131/463 (28%), Gaps = 81/463 (17%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
+Q EF++ D+ + R IG + +++ L G + + L
Sbjct: 150 YQKEFLQSDDSFR--------------IVLKSRQIGFSYVSSADALIGAVA--GRNQLFL 193
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
+ SE Q L + KW S + D H + +
Sbjct: 194 SASEEQAL-ILMRYLRKWASE--------------FGVEFAKDSEHEIALPNGAIIKDLA 238
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + T I DE + P+ + + + S P
Sbjct: 239 HNFRTVQEFTGD---------IWMDEFAWYPNPKKIWHAFVPSIGAIKGRLTILSTPFEE 289
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS---FHEGIIARYGLDSDVTRVEVCGQFPQ 290
F+E+++ + + I+ E + + D+D QF
Sbjct: 290 RSLFHELYSDESKYYMFKRFCVSIYSAIEDGLDFDLETMRNLF--DADTWASAYECQFVD 347
Query: 291 QDIDSFIPLNIIEEALNRE---PCPDPYAPLIMGCDIAEEGGDNTVVVLR---------- 337
S + + +I+ + + P + G DI +T+ +
Sbjct: 348 D-ESSLLSIALIKSCVYDKASYYTPKSNQVIYAGYDIGRVSDRSTLAGVVLEDVTNRARG 406
Query: 338 -----RGPV--IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
+G + + +K ++ ++ Y + ID G + +
Sbjct: 407 QRSLSQGGRYIVAMMDVLAKAKFDEQKEHLTSFLKTYPLSVLKIDKTGIGMNLAENIHDK 466
Query: 391 GY-HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF--ASLINHSGLIQNLKSLKSFIV 447
V V R+ E+ + + E S+ N LI ++ ++K I
Sbjct: 467 FRSRVSGVWFSNT---------RKEEMALNLKKAFEDKLISIPNDPLLIADIHAIKRTIG 517
Query: 448 PNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRC 490
+ ++KR + D L + G
Sbjct: 518 AKS--FKYDAKRNEYG-HADRFWALALALSHVSVVKAKKGGGA 557
>gi|170748408|ref|YP_001754668.1| hypothetical protein Mrad2831_1990 [Methylobacterium radiotolerans
JCM 2831]
gi|170654930|gb|ACB23985.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
2831]
Length = 478
Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/434 (12%), Positives = 123/434 (28%), Gaps = 46/434 (10%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-------TLNAWLVLWLMSTRPGISV-- 110
+ P V + GR GK+ A LV + PG +
Sbjct: 50 RAIFTALTGREREPERPVDELWGIVGRRGGKSRAFSVLGAYLAGLVDYSAVQAPGERIKL 109
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+A++ Q + + + + S+ + G+D +
Sbjct: 110 PIMASTTVQAAKIFSYMLGVFEHSAELRDMVDGDPT--------SETIRLLSGVDIEVRP 161
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS-N 229
+T +T G + ++ +I + L + +
Sbjct: 162 ANYKTIR---GETLAGCLADEVAFWHLENSANPDTLILDAVRPGLATTGGPLCVLSSPYA 218
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ + ++ P D + + + Y D E +F
Sbjct: 219 RKGELYRTHQRDFGPSGDPAVLVLRAPSQTMNPSLDPAVVKRAYTRDPAAASAEYGAEFR 278
Query: 290 QQDIDSFIPLNIIEEALNRE---PCPDPYAPLIMGCDIAEEGGDNTVVVLRR---GPVIE 343
+FI L ++ + + P P CD + G D+ + + G
Sbjct: 279 ADVE-AFISLEAVQACMAGDLLERAPAPGLTYQAFCDPSGGGADSMTLAIGHAENGIAYL 337
Query: 344 H--LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
+ + + L++ Y G+ T D+ + +
Sbjct: 338 DAVREMYPGGSPEAVVSTFAELLQSY----------GLGSVTGDH---YAGEWPKERFRV 384
Query: 402 RAVDLEFCRNRRTELHVKMADWLEF--ASLINHSGLIQNLKSLKSFIVPNTGELAIESKR 459
+ E +++++ + L ++ + L L SL+ TG+ I+ +
Sbjct: 385 HGITYERSERSKSDIYREFLPVLNSQRCRMLPVAKLEAQLVSLERRTTRGTGKDTIDHPQ 444
Query: 460 VKGAKSTDYSDGLM 473
VKG D ++ +
Sbjct: 445 VKG-AHDDVANAVA 457
>gi|296393586|ref|YP_003658470.1| terminase [Segniliparus rotundus DSM 44985]
gi|296180733|gb|ADG97639.1| Terminase [Segniliparus rotundus DSM 44985]
Length = 498
Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 62/423 (14%), Positives = 104/423 (24%), Gaps = 66/423 (15%)
Query: 16 FDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNP 75
+W+ ++ + L L P WQ + H L + P
Sbjct: 10 VPRVWTPPLRELTPDASLGHSVIEFARDVLAVQLLP--WQEWLL----THALEVRPDGLP 63
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
A R GK+ L L LW R + + + L +
Sbjct: 64 RFRTVIALAARQNGKSLLMIVLALW----RVYVKGGVVVGTAQDLANS------------ 107
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
K W E L+ S+VLH K + G I
Sbjct: 108 -EKAWGEAVELAEGTPELASEVLHVDKTNGKKSLRLHSGAQYRIAAASRRGARGFTADLI 166
Query: 196 INDEA--SGTPDVINLGILGFLTERNANRFWIMTSN--------------------PRRL 233
+ DE + D + +A + + + P
Sbjct: 167 LLDELREHQSFDSWAAVTKTTMARPDAQVWCLSNAGDHLSVVLAHLRNIAHRQLDWPDGK 226
Query: 234 SGKFYEIFNKPL-DDWKRFQIDTRTVEGIDPSFHEGIIARYG-----------------L 275
+ +D + G DP
Sbjct: 227 PDHVEDQAPDDEAEDDSVGIFEWSAPPGCDPKDRHAWAQANPALGVTITERAIASAYATD 286
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT-VV 334
+ V EV Q+P P + + +P ++G D+A T +
Sbjct: 287 PAPVFAAEVLCQWPLTVTPGPFPPGSWDSTRDDNSTIATDSPRVVGLDMAWNRSTVTLAL 346
Query: 335 VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA-RTCDYLEMLGYH 393
RR + H+ ++ + + A+I+ AN A LE G
Sbjct: 347 AGRRDDGMAHVEITAQRAGSDWVAPWLAE-RREKIAAVIVQANGAPASSLVADLEAAGLP 405
Query: 394 VYR 396
V
Sbjct: 406 VIA 408
>gi|282534188|gb|ADA82296.1| putative terminase [Escherichia phage K1H]
gi|282535239|gb|ADA82445.1| putative terminase [Escherichia phage K1ind3]
Length = 416
Score = 75.3 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/402 (13%), Positives = 99/402 (24%), Gaps = 39/402 (9%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A G G GKT + +L M PG + + ++ + + +LL
Sbjct: 21 AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + S + + D N
Sbjct: 81 VKSGDKEVVVTRGKTVLGTVICRSMDNPGSIVGFKIAAAVVDELDVLSREKAELAWNKIV 140
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
+ L +T+ P + + P + Q T
Sbjct: 141 ARMR----------LVIPGVTNHISVTTTPEGFKFVYAKFKENPTPSYSMVQASTHENAR 190
Query: 261 I-DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
P + + Y + + + G+F S + P L
Sbjct: 191 FLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKETIQPGDTLY 247
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII-DANN 378
+G D + V V R+ D T I+ + ++ DA+
Sbjct: 248 IGQDFNVTKNASAVYVQRKDGWHAVAELKGLFDTPDTVRVITEKWKSQGHRIVVYPDASG 307
Query: 379 -----TGARTCDY--LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN 431
A D L+ G+ V D N LE L
Sbjct: 308 KNRKTNSASISDIALLQQAGFDVRAKSANPPVKDRVLAVN----------TALEKGKLWV 357
Query: 432 HSGLIQNLK-SLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
+ L + +L+ + G E + +D L
Sbjct: 358 NDHLCPEIAKTLEQQAYDDNG----EPAKDGIIDH--MADAL 393
>gi|282547341|gb|ADA82397.1| putative terminase [Escherichia phage K1ind2]
Length = 416
Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 56/402 (13%), Positives = 101/402 (25%), Gaps = 39/402 (9%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A G G GKT + +L M PG + + ++ + + +LL
Sbjct: 21 AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + S + + D N
Sbjct: 81 VKSGDKEVVVTRGKTVIGTVICRSMDNPGSIVGFKIAAAVVDELDVLSREKAELAWNKIV 140
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
+ VI I +T+ P + + P + Q T
Sbjct: 141 ARMRLVIPGVI----------NHISVTTTPEGFKFVYAKFKENPTPSYSMVQASTHENAR 190
Query: 261 I-DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
P + + Y + + + G+F S + P L
Sbjct: 191 FLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKETIQPGDTLY 247
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII-DANN 378
+G D + V V R+ D T I+ + ++ DA+
Sbjct: 248 IGQDFNVTKNASAVYVQRKDGWHAVAELKGLFDTPDTVRVITEKWKSQGHRIVVYPDASG 307
Query: 379 -----TGARTCDY--LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN 431
A D L+ G+ V D N LE L
Sbjct: 308 KNRKTNSASISDIALLQQAGFDVRAKSANPPVKDRVLAVN----------TALEKGKLWV 357
Query: 432 HSGLIQNLK-SLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
+ L + +L+ + G E + +D L
Sbjct: 358 NDHLCPEIAKTLEQQAYDDNG----EPAKDGIIDH--MADAL 393
>gi|226305996|ref|YP_002765956.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
gi|226185113|dbj|BAH33217.1| hypothetical protein RER_25090 [Rhodococcus erythropolis PR4]
Length = 402
Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 46/376 (12%), Positives = 95/376 (25%), Gaps = 44/376 (11%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
H + FK + GR GKTT + PG V A + Q + +
Sbjct: 5 HQSQRKIAESSSRFKV-LRCGRRFGKTTYAVEEMKGACLFEPGP-VAYFATTRDQARDIV 62
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
WAE+ + ++ Y L + + +
Sbjct: 63 WAELLE----------------NVIGTTNYVSHNEQRLEVTLRRPDGSLNRIRLFGWENI 106
Query: 185 VGHHNTYGMAIINDEAS---GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
++ DE I L + ++ T + + E
Sbjct: 107 ETARGKKYSLVVLDELDSMRAFEKQWREIIRATLADYRGRALFMGTPKGYKSLYRL-EKL 165
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+K +++ F + + + + + E+ ++ + + +
Sbjct: 166 SKTNANYEVFHFTSFDNPFLSVEELDEMRGEMTV--TQYAQEMLAEYHKMEGLIY----- 218
Query: 302 IEEALNREPCPDPYAPLIMGCDI--AEEGGDNT---VVVLRRGPVIEHLFDWSKTDLRTT 356
E ++ P+ P I + ++ + K
Sbjct: 219 EEFNRDQHIKALPFTPERWALSIDFGYNHPFAAGIFAIGSDNSLHLDRMVYKRKLSDEQR 278
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
N + L+ + D I D+ LG + V+ +V E
Sbjct: 279 MNAVRDLIGDTKLDFQIGDSE-DPLAIDTLNRQLGLKIQPVVKGAGSVL---------EG 328
Query: 417 HVKMADWLEFASLINH 432
K L L
Sbjct: 329 INKSKSLLHQGRLTMD 344
>gi|83943173|ref|ZP_00955633.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
gi|83846181|gb|EAP84058.1| terminase, large subunit, putative [Sulfitobacter sp. EE-36]
Length = 408
Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 58/420 (13%), Positives = 105/420 (25%), Gaps = 67/420 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + V + + Q++ + S L+
Sbjct: 16 IMGGRGAGKTRAGAEWVRAQVEGSRPLDAGRCRRVALVGETIEQVREVMIFGDSGILACS 75
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P + ++ + G A
Sbjct: 76 PADRRPDWEATRKRL------------------VWPNGAVATVHTAHDPEGLRGPQFDAA 117
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + + L R + T+ R G + P
Sbjct: 118 WVDELAKWKKAEETWDQLQFALRLGEDPRVCVTTTP--RNVGVLKNLLASPST-VTTHAP 174
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ SF E + ARY + + R E+ G + IE R+
Sbjct: 175 TEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEGALWTSERIEAGRVRDVPL- 232
Query: 314 PYAPLIMGCDIAEE---GGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKI 360
+++G D A G D +V+ V+
Sbjct: 233 -LDRIVVGLDPATTAGAGSDECGIVVVGAQTQGPPQDWRAVVMADCTVQGATPSGWARAA 291
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+E+Y D ++ + N G + L + V + R E +
Sbjct: 292 ISAMEQYGADRLVAEVNQGGQMVAEVLRQVDPLVPVKSVHASRGKVA-----RAEPVAAL 346
Query: 421 ADWLEFASLINHSGLIQNL--KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + L + + + + S D D L++ E
Sbjct: 347 YEQGRVGHVAGLDALEDQMCRMTARGYEATG---------------SPDRVDALVWALHE 391
>gi|307294267|ref|ZP_07574111.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
L-1]
gi|306880418|gb|EFN11635.1| hypothetical protein SphchDRAFT_1737 [Sphingobium chlorophenolicum
L-1]
Length = 438
Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 57/404 (14%), Positives = 108/404 (26%), Gaps = 47/404 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AGRG GKT A V + P + + + + + + S L++ P +
Sbjct: 59 AGRGFGKTRAGAEWVRSVAEGDPAARIALVGATLGEARAVMVEGASGVLAVSPWWNR--- 115
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L K + DE +
Sbjct: 116 ---------------PAFLPALRKLVWRNGAVATLFGAAEAESLRGPQFSHGWADEIAKW 160
Query: 204 PDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
+ R + T+ PR ++ + D +
Sbjct: 161 AGGQAAWDNLMMGMRLGIAPRVLATTTPRPVALVRGLVERNGSDVVVTRGRSADNASHLA 220
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
F + YG + + R E+ G+ ++ + +++E ++
Sbjct: 221 DGFLAAMERNYG-GTRLGRQELDGELIEEVEGALWSRDLLERCRVAHVRGTLARVVVAVD 279
Query: 323 DIAEEGGDNTVVVL-----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
A GD +V+ + ++ + D ++ +AN
Sbjct: 280 PPASVHGDACGIVVVGLGGDGRAYVIADATVEGATPEGWARAVAAAALVHGADRVVAEAN 339
Query: 378 NTGARTCDYLE--MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL 435
N GA L G V V + V R E + + A + L
Sbjct: 340 NGGAMVESVLRAAEAGLPVRLVHASRGKV-------ARAEPVAALYEAGRVAHRGGFAEL 392
Query: 436 IQNLKSLKSFIVPNTGELAIESKRVKG-AKSTDYSDGLMYTFAE 478
L L + G + G +S D +D L++ E
Sbjct: 393 EDQLCGL----MLGGGYV--------GPGRSPDRADALVWGLTE 424
>gi|226940437|ref|YP_002795511.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715364|gb|ACO74502.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 133
Score = 74.6 bits (181), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ AN++TQL+T EV KW L HWF+ QS S+ +K +
Sbjct: 1 MITANTDTQLRTKTSPEVGKWQRLSITSHWFDPQSASIAARD----------KEHAKTWR 50
Query: 171 TMCRTYSEERPDTFVGHHNTY-GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+SE + F G HN + +I DEAS D + G LT+ WI N
Sbjct: 51 ADFVPWSEHNTEAFAGLHNKGKRIVLIFDEASAIADKVWEVAEGALTDEETEIIWIAFGN 110
Query: 230 PRRLSG 235
P R G
Sbjct: 111 PTRNIG 116
>gi|116624478|ref|YP_826634.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
Ellin6076]
gi|116227640|gb|ABJ86349.1| hypothetical protein Acid_5400 [Candidatus Solibacter usitatus
Ellin6076]
Length = 260
Score = 74.6 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/260 (15%), Positives = 75/260 (28%), Gaps = 27/260 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
W + V + + ++ R GK+T+ A + G I
Sbjct: 25 EWARRALGFEADAAQARVLD--TRSKRVLLNCTRQWGKSTVTAARAVHEAVKNAGSLTIA 82
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+ + Q E + K L + + + + S+
Sbjct: 83 VTPTARQT-----GEFVR-------KAATFASGLEMRVKGDGHNEMSLAFPNGSRIVGLP 130
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ ++ DEAS D + + + L + + T P
Sbjct: 131 GTEATVRGFSA--------VTLLLIDEASRVGDDLYMAMRPMLAVSAGTLWLMST--PHG 180
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
G FYE + + W+R + + E G + R E C +F +
Sbjct: 181 KRGFFYEAWANGGETWERVSVKAEDCPRFKAEYLEEERQVMGE--RIYRQEYCCEF-GET 237
Query: 293 IDSFIPLNIIEEALNREPCP 312
+ ++IE A + E P
Sbjct: 238 SGAVFDRDLIEAAFSDEVTP 257
>gi|282533135|gb|ADA82244.1| putative terminase [Escherichia phage K1G]
Length = 416
Score = 74.6 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 56/402 (13%), Positives = 101/402 (25%), Gaps = 39/402 (9%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A G G GKT + +L M PG + + ++ + + +LL
Sbjct: 21 AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + S + + D N
Sbjct: 81 VKSGDKEVVVTRGKTVLGTVICRSMDNPGSIVGFKIAAAVVDELDVLSREKAELAWNKIV 140
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
+ VI I +T+ P + + P + Q T
Sbjct: 141 ARMRLVIPGVI----------NHISVTTTPEGFKFVYAKFKENPTPSYSMVQASTHENAR 190
Query: 261 I-DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
P + + Y + + + G+F S + P L
Sbjct: 191 FLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKEVIQPGDTLY 247
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII-DANN 378
+G D + V V R+ D T I+ + ++ DA+
Sbjct: 248 IGQDFNVTKNASAVYVQRKDGWHAVAELKGLFDTPDTVRVITEKWKSQGHRIVVYPDASG 307
Query: 379 -----TGARTCDY--LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN 431
A D L+ G+ V D N LE L
Sbjct: 308 KNRKTNSASISDIALLQQAGFDVRAKSANPPVKDRVLAVN----------TALEKGKLWV 357
Query: 432 HSGLIQNLK-SLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
+ L + +L+ + G E + +D L
Sbjct: 358 NDHLCPEIAKTLEQQAYDDNG----EPAKDGIIDH--MADAL 393
>gi|163746673|ref|ZP_02154030.1| hypothetical protein OIHEL45_14759 [Oceanibulbus indolifex HEL-45]
gi|161379787|gb|EDQ04199.1| hypothetical protein OIHEL45_14759 [Oceanibulbus indolifex HEL-45]
Length = 414
Score = 74.6 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 61/439 (13%), Positives = 110/439 (25%), Gaps = 71/439 (16%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---------VICLAN 115
LN P + I GRG GKT A W+ S G V +
Sbjct: 5 WALNHQLPPEGDWRTWVIMGGRGAGKTRAGAE---WVRSKVEGSRPLDPGECSRVALVGE 61
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ Q++ + S L+ P + ++
Sbjct: 62 TIEQVREVMIFGDSGILACSPPDRRPDWEATRKRL------------------VWPNGAI 103
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLS 234
+ G A DE + R +T+ PR +
Sbjct: 104 ATVHTAHDPEGLRGPQFDAAWVDELAKWKRGQEAWDQLQFALRLGERPQVCVTTTPRNVD 163
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ + + SF E + ARY + + R E+ G
Sbjct: 164 --VLKALLQSPSTVTTHAPTEANAANLAGSFLEEVRARY-RGTRLGRQELDGVLLADAEG 220
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEG---GDNTVVVLR----------RGPV 341
+ ++E R +++G D A D +V+ V
Sbjct: 221 ALWTSALLE--AGRVQVAPELDRIVVGLDPATTSGAGSDECGIVVVGAQTQGPPQEWRAV 278
Query: 342 IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
+ + +Y D ++ + N G + L + V
Sbjct: 279 VLADCTVQGATPNGWAQAAIAAMTRYGADRLVAEVNQGGQLVSEVLRQVDPLVSLKTVHA 338
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN--LKSLKSFIVPNTGELAIESKR 459
+ R E + + + L L L + + +
Sbjct: 339 ARGKVA-----RAEPVAALYEQGRVSHLPGLDALEDQMCLMTARGY-------------- 379
Query: 460 VKGAKSTDYSDGLMYTFAE 478
+G S D D L++ E
Sbjct: 380 -EGKGSPDRVDALVWALHE 397
>gi|269838926|ref|YP_003323618.1| hypothetical protein Tter_1890 [Thermobaculum terrenum ATCC
BAA-798]
gi|269790656|gb|ACZ42796.1| hypothetical protein Tter_1890 [Thermobaculum terrenum ATCC
BAA-798]
Length = 534
Score = 74.6 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/417 (11%), Positives = 107/417 (25%), Gaps = 71/417 (17%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW--LMSTRPGIS 109
R +Q++ + + A+ R GK + A L+ G
Sbjct: 86 RPYQVDAAREILRAVERGGGDML------AVVFSRQAGKDEMLAQLLAMLLWKYRWRGGQ 139
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V+ + + + L ++ + L V S+ S
Sbjct: 140 VVVVQPTMQ-------PQGMISRRRLLDRLPGALVRGLLRVEENMVAVGKASVTFLSASP 192
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
R + + ++ +EA + + M +
Sbjct: 193 EASARGNTA-------------SLLLVANEAQDISPDRWDAVFDPMAASTNATTIFMGTV 239
Query: 230 PRRLSGKFYEIFNKPL-----DDWKRFQIDTRTVEGIDPSF---HEGIIARYGLDSDVTR 281
+ ++ + F + + V P++ + IA+ G R
Sbjct: 240 WTSRTLLARQMRYLRQLELEVGRRRVFMVPWQEVARHVPAYGERVQARIAQLGRHHPFVR 299
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALN---REPCPDPYAPLIMGCDIAEEG--------GD 330
E C + F P + E R+ P P D+ E D
Sbjct: 300 TEYCLEELSD-DGGFFPPAVTERMRGDHPRQLLPTPGRTYAALLDVGGEDLAAGPSPRRD 358
Query: 331 NTVVVLRRG-----------PVIEHLFDWSKTDLRTTNNKISGLVEK-YRPDAIIIDANN 378
+T + + + + W+ ++ LV + +++DA
Sbjct: 359 STALTIVEVCHPEGADLQPVYRVMTRYVWTGVGQPELLPQVVHLVRDVWACRRLVVDATG 418
Query: 379 TGARTCDYLEMLGYH--VYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS 433
GA L + V + + ++ L ++H+
Sbjct: 419 LGAGLASALRRILPPRCVIPFVFTAAS---------KSALGWDFLSICAAGRFLDHA 466
>gi|320162476|ref|YP_004175701.1| hypothetical protein ANT_30750 [Anaerolinea thermophila UNI-1]
gi|319996330|dbj|BAJ65101.1| hypothetical protein ANT_30750 [Anaerolinea thermophila UNI-1]
Length = 506
Score = 74.6 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 58/435 (13%), Positives = 112/435 (25%), Gaps = 76/435 (17%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q + + L+ + R GK + A L +L++ G S
Sbjct: 26 RPYQAQVARAIVDAVLHDRG------LSFVVMFPRQSGKNEVQAHLEAYLLTLFSGTS-- 77
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
AE+ K L + M+ L +
Sbjct: 78 --------------AEMVKASPTLRPQSLTAMRRLERVLNANPLTRGRWRRESGNTFRLG 123
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
R + T + + DEA L +T +
Sbjct: 124 QARIHFLSAAPGASIVGATASLLLEVDEAQAVSIEKFDTELAPMTASTGAVRVFWGTAWT 183
Query: 232 -----RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF---HEGIIARYGLDSDVTRVE 283
+ + + F++ V P + E I + G + R +
Sbjct: 184 ASTLLGRELRLAQAEQARDGVRRVFRLTAAEVIADHPRYARTVERAIQQLGRNHPAVRTQ 243
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPD---PYAPLIMGCDIAEE------------- 327
+ + P + P D P D+
Sbjct: 244 YFSEEVDA-AGTLFPEERLALLRGTHPWQDAPLPGRTYAFLLDVGGTAPVQLPLMDDYAG 302
Query: 328 -GGDNTVVVLRR-----------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
D++ +V+ HL W+ ++ L ++ P I+ID
Sbjct: 303 NRRDSSALVIVEVEPPQDGRPAPRYRAVHLCQWTGVSQTRLFEQVLALARQWSPRRIVID 362
Query: 376 ANNTGARTCDYLEM-LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS--LINH 432
A GA D+L+ L V R + + +++L + + +E L
Sbjct: 363 ATGVGAGLADFLDRALPGRVVRFVFSSAS---------KSDLGYRFLEVVESGRFHLPQA 413
Query: 433 SG-----LIQNLKSL 442
L++ +
Sbjct: 414 DEGRAQALVERFLAQ 428
>gi|317120885|ref|YP_004100888.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
12885]
gi|315590865|gb|ADU50161.1| hypothetical protein Tmar_0036 [Thermaerobacter marianensis DSM
12885]
Length = 410
Score = 74.6 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 66/433 (15%), Positives = 117/433 (27%), Gaps = 53/433 (12%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
E + P ++ I AGRG GKT A V + + +
Sbjct: 9 AEALLYDWRFWARPKQLPPEGPWRIWLILAGRGFGKTRTGAEWVREQVERHGRRRIAIVG 68
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ ++ + S LS+ P +
Sbjct: 69 RTAADVRDVMVEGESGILSISPPWFRPVYEPSKRRLT------------------WPNGA 110
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRR 232
+ D A DE + P+ + + G + T P +
Sbjct: 111 IATLYSADEPDLLRGPQHDAAWADELAAWRRPEAWDNLMFGLRLGPDPRVVVTTTPRPVK 170
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
L ++ N P + P+F E II+RY + + R E+ G+
Sbjct: 171 L---IRDLLNDPT-CVVTRGSTYENAANLAPAFLEQIISRY-EGTRLGRQELYGEVLDDV 225
Query: 293 IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIA---EEGGDNTVVVL----RRGPVIEHL 345
+ I+E RE +++ D A EEG D T +V+ G
Sbjct: 226 PGALWQRKRIDELRVREAP--ELVRVVVAIDPAVTSEEGSDETGIVVAGRGVDGDAYVLA 283
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+ + + D I+ + NN G + + V +
Sbjct: 284 DRSCRMSPDGWARRAVKAYYDFDGDRIVGEVNNGGDLVETVIRTVDPKVPYKAVRASRGK 343
Query: 406 LEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
R E + + + + L L + G S
Sbjct: 344 A-----VRAEPVAALYEQGKVHHVGTFDHLEDQLCQITPDGYQGAG-------------S 385
Query: 466 TDYSDGLMYTFAE 478
D +D L++ E
Sbjct: 386 PDRADALVWALTE 398
>gi|282547289|gb|ADA82346.1| putative terminase [Escherichia phage K1ind1]
Length = 416
Score = 74.2 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/402 (13%), Positives = 99/402 (24%), Gaps = 39/402 (9%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A G G GKT + +L M PG + + ++ + + +LL
Sbjct: 21 AYVGGFGSGKTFVGCLDLLTFMLKHPGTRLGYFGPTYPAIRDIFYPTFEEAANLLGLDVL 80
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + + + S + + D N
Sbjct: 81 VKSGDKEVVVTCGKTVLGTVICRSMDNPGSIVGFKIAAAVVDELDVLSREKAELAWNKIV 140
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
+ L +T+ P + + P + Q T
Sbjct: 141 ARMR----------LVIPGVTNHISVTTTPEGFKFVYAKFKENPTPSYSMVQASTHENAR 190
Query: 261 I-DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
P + + Y + + + G+F S + P L
Sbjct: 191 FLPPDYISSLTETY--PAQLINAYLNGEFVNLTSGSVY-YAYDRRKHRSKEVIQPGDTLY 247
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII-DANN 378
+G D + V V R+ D T I+ + ++ DA+
Sbjct: 248 IGQDFNVTKNASAVYVQRKDGWHAVAELKGLFDTPDTVRVITEKWKSQGHRIVVYPDASG 307
Query: 379 -----TGARTCDY--LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN 431
A D L+ G+ V D N LE L
Sbjct: 308 KNRKTNSASISDIALLQQAGFDVRAKSANPPVKDRVLAVN----------TALEKGKLWV 357
Query: 432 HSGLIQNLK-SLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
+ L + +L+ + G E + +D L
Sbjct: 358 NDHLCPEIAKTLEQQAYDDNG----EPAKDGIIDH--MADAL 393
>gi|241760933|ref|ZP_04759022.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|241374552|gb|EER64013.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 428
Score = 74.2 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/351 (10%), Positives = 86/351 (24%), Gaps = 31/351 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A +++ PG+ +C+ + LK + K E
Sbjct: 28 GGRGSGKSHFFAEMLVEDCLRLPGLRAVCIREVQKSLKDS-------------AKRLIEA 74
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + H + + + + + ++ +EA
Sbjct: 75 KLSAYHLGSNVGFRVFRDHIQTPGNGIIIFQGMQDHTAESIKSLEGFSR--AWVEEAQTL 132
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + ++ ++ + P Q +
Sbjct: 133 SQRSLELLRPTIRTIDSELWFSWNPRFKTDPVDRMLRGETPPTGAVVVQANWENNPWFPS 192
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL----- 318
+ D D R G + + ++ + + + PL
Sbjct: 193 PLDQERRDCLANDPDKYRHIWEGGYAEITEGAYYAQALAKARSEKRIAVVAADPLMTLRA 252
Query: 319 IMGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ D T + + + G I L + + + Y I+
Sbjct: 253 VWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQGQPLSAHLHWLRSHDYGGALCILPH 312
Query: 377 NN------TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRT---ELHV 418
+ L G+ V + Q ++ R ++
Sbjct: 313 DGAQHDKIASTTYEGALREAGFSVRVIPNQGAGAAMQRIEAARRLFPQMWF 363
>gi|225872083|ref|YP_002753538.1| putative bacteriophage portal protein [Acidobacterium capsulatum
ATCC 51196]
gi|225792593|gb|ACO32683.1| putative bacteriophage portal protein [Acidobacterium capsulatum
ATCC 51196]
Length = 507
Score = 73.8 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 67/471 (14%), Positives = 132/471 (28%), Gaps = 69/471 (14%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + + FK A+ + R IG + A P + L+ S
Sbjct: 25 EVPPALALRPYQVRWVQDEARFKIAVKSAR-IGFSFATALEAALDCLAHPNTTWTVLSAS 83
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ Q + + + ++ + + + + + +
Sbjct: 84 KAQSVEFIET-CHRLIEVMTGTAELYHDED-WYDELGHIEAIQQRITFANGARIIA---- 137
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI-MTSNPRRLSG 235
P G AI+++ A + I +T + A + + S P G
Sbjct: 138 ---LPANPRTARGYPGNAILDEFAHH---EESYAIWAAITRQVALGHKVRVLSTPNGEQG 191
Query: 236 KFYEIF-----------NKPLDDWKRFQIDTRTVEG----IDPSFHEGIIARYGLDSDVT 280
KFY++ K + I P + + D+D+
Sbjct: 192 KFYDLCKELGLTDGVAPENNFKIVKGWSIHWIDAPMAIADGCPINMDEMRQLIQ-DADIV 250
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREP------CPDPYAPLIMGCDIAEEGGDNTVV 334
E F + ++IPL++I+ A + P L G D+ T
Sbjct: 251 NQEFYCVFLKS-GGAWIPLDLIQRAESETATVEWPGGYAPRGRLFGGIDVGRFSNRTTFW 309
Query: 335 VLRRGPVIEHLFD---WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
V + + N I+ ++ + A ID+ G D L L
Sbjct: 310 VKEDLGDVLVTRMAMAIHEMPFPDQANLIAPWMKMTQVTA--IDSTGMGIGLFDDLNKLC 367
Query: 392 Y-HVYRVLGQKRAVDLEF--------------CRNRRTELHVKMADWLEFA--SLINHSG 434
V V + + + +L VK+ E +
Sbjct: 368 PGRVMGVNFAGSSRVRDEQKKKHAATSNVADGAVRLKVDLAVKLKKSFESGRERIPYSLD 427
Query: 435 LIQNLKSLKSFIVPNT-----GELAIES-----KRVKGAKSTDYSDGLMYT 475
+ ++ +K + ++AIE+ K+ K D+ G
Sbjct: 428 IRTEIQGVKRVATASGVTFDAPQVAIETGVAGGKKTKARAHADHFWGCALA 478
>gi|56551275|ref|YP_162114.1| PBSX family phage terminase large subunit [Zymomonas mobilis subsp.
mobilis ZM4]
gi|56542849|gb|AAV89003.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
subsp. mobilis ZM4]
Length = 428
Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/351 (10%), Positives = 86/351 (24%), Gaps = 31/351 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A +++ PG+ +C+ + LK + K E
Sbjct: 28 GGRGSGKSHFFAEMLVEDCLRLPGLRAVCIREVQKSLKDS-------------AKRLIEA 74
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + H + + + + + ++ +EA
Sbjct: 75 KLSAYHLGRNVGFRVFRDHIQTPGNGVIIFQGMQDHTAESIKSLEGFSR--AWVEEAQTL 132
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + ++ ++ + P Q +
Sbjct: 133 SQRSLELLRPTIRTIDSELWFSWNPRFKTDPVDRMLRGETPPTGAVVVQANWENNPWFPS 192
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL----- 318
+ D D R G + + ++ + + + PL
Sbjct: 193 PLDQERRDCLTNDPDKYRHIWEGGYAEITEGAYYAQALAKARSEKRIAVVAADPLMTLRA 252
Query: 319 IMGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ D T + + + G I L + + + Y I+
Sbjct: 253 VWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQGQPLSAHLHWLRSHDYGGALCILPH 312
Query: 377 NN------TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRT---ELHV 418
+ L G+ V + Q ++ R ++
Sbjct: 313 DGAQHDKIASTTYEGALREAGFSVRVIPNQGAGAAMQRIEAARRLFPQMWF 363
>gi|260753099|ref|YP_003225992.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|258552462|gb|ACV75408.1| phage terminase, large subunit, PBSX family [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 428
Score = 73.4 bits (178), Expect = 7e-11, Method: Composition-based stats.
Identities = 36/351 (10%), Positives = 86/351 (24%), Gaps = 31/351 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A +++ PG+ +C+ + LK + K E
Sbjct: 28 GGRGSGKSHFFAEMLVEDCLRLPGLRAVCIREVQKSLKDS-------------AKRLIEA 74
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + H + + + + + ++ +EA
Sbjct: 75 KLSAYHLGSNVGFRVFRDHIQTPGNGVIIFQGMQDHTAESIKSLEGFSR--AWVEEAQTL 132
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + ++ ++ + P Q +
Sbjct: 133 SQRSLELLRPTIRTIDSELWFSWNPRFKTDPVDRMLRGETPPTGAVVVQANWENNPWFPS 192
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL----- 318
+ D D R G + + ++ + + + PL
Sbjct: 193 PLDQERRDCLANDPDKYRHIWEGGYAEITEGAYYAQALAKARSEKRIAVVAADPLMTLRA 252
Query: 319 IMGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ D T + + + G I L + + + Y I+
Sbjct: 253 VWDIGGTGAKADATAIWIVQYVGREIRFLDHYEAQGQPLSAHLHWLRSHDYGGALCILPH 312
Query: 377 NN------TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRT---ELHV 418
+ L G+ V + Q ++ R ++
Sbjct: 313 DGAQHDKIASTTYEGALREAGFSVRVIPNQGAGAAMQRIEAARRLFPQMWF 363
>gi|163792602|ref|ZP_02186579.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
gi|159182307|gb|EDP66816.1| hypothetical protein BAL199_17183 [alpha proteobacterium BAL199]
Length = 422
Score = 73.4 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 65/442 (14%), Positives = 113/442 (25%), Gaps = 57/442 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ P + I AGRG GKT A V L + + +A +
Sbjct: 21 LLHDWPFWARPKQLPPAGDWRVWLILAGRGFGKTRTGAEWVRGLAESGRARRIALVAETA 80
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
+ + S L+ + + +
Sbjct: 81 ADARDVMIEGESGLLACCAPWGRPKYEPSKRRVT------------------WPNGAIAT 122
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSG 235
D A DE + + +LG + T PR
Sbjct: 123 SFSADDPDQLRGPQFDAAWADEIAKWRYEAAWDNLMLGLRLGADPRCVATTTPKPR---- 178
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+ + P F + I+ARY + + R E+ G+F + +
Sbjct: 179 AWLARLMADPGTVVTRGATRENAGNLAPGFLDQILARYA-GTRLGRQEIDGEFLTEIPGA 237
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT-----VVVLRRGPVIEHLFDW-- 348
+IE A A +I+ D A G ++ VV G + +
Sbjct: 238 LWTRTLIEGARALPGAVPGLARIIVAVDPAVTSGSDSDETGIVVAGVDGEGRFWVLEDLS 297
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
+ + + ++ DA++ + N G L + + RAV
Sbjct: 298 GRMSPDLWARRSADAYRRHHADAVVCEVNQGGDLVVATLRTVDGSLP-----VRAVRATR 352
Query: 409 CRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
+ R E + + L + G S D
Sbjct: 353 GKRLRAEPVAALYEQGRVRHAGPFPELEDQMAG-----FTGAS----------GDASPDR 397
Query: 469 SDGLM-----YTFAENPPRSDM 485
D L+ F P RS
Sbjct: 398 LDALVWALTDLAFDRPPARSRE 419
>gi|325292327|ref|YP_004278191.1| large terminase phage packaging protein [Agrobacterium sp. H13-3]
gi|325060180|gb|ADY63871.1| large terminase phage packaging protein [Agrobacterium sp. H13-3]
Length = 419
Score = 73.4 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 49/434 (11%), Positives = 109/434 (25%), Gaps = 55/434 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEV---FKGAISAGRGIGKTTLNAWLVLWLMSTRP--GIS 109
Q + ++ P + GRG GKT A V + S +
Sbjct: 11 QKQVFTLLRDWRFIGNLPQQPPEGDWRTWLLIGGRGSGKTRAGAEWVHRIASAGKQSDLR 70
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLP-NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
+ +A + + + +S + + FE+ L
Sbjct: 71 IALVAETLGDAREVMIDGISGICRIARRCRPAFEVSRRRL-------------------- 110
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIM 226
+ DE P + L A R +
Sbjct: 111 IWPNGAMAQVFSSEDPESLRGPQFHMAWADELGKWKYPQETWDMLQFGLRLGEAPRQLVT 170
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
T+ + + + P F + + RYG + + R E+ G
Sbjct: 171 TTP---RPIPLLKALLADPSSRVAKMPTAMNAQNLSPGFLKAMHDRYG-GTRLGRQEIGG 226
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV-----LRRGPV 341
+ + + +E + + P + + +V + V
Sbjct: 227 ELIDEREGALWKRADLEAIVETDHEPLARIVVAVDPPAGIGENSCCGIVAAGLGISGKLV 286
Query: 342 IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
+ + V ++ D ++ + N G L+ + ++ L +
Sbjct: 287 VLADCSVEGETPAGWARAVVAAVRRHEGDRVVAEVNQGGEMVRAMLQSIDANLPLTLVRA 346
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVK 461
R E + + + + + + + G + S
Sbjct: 347 S---RGKFT--RAEPVAALYE---QGRVRHAAQF--EKLTDQMADFGPDG---LSS---- 389
Query: 462 GAKSTDYSDGLMYT 475
+S D D L++
Sbjct: 390 -GRSPDRLDALVWA 402
>gi|240140465|ref|YP_002964944.1| Phage terminase, large subunit, PBSX [Methylobacterium extorquens
AM1]
gi|240010441|gb|ACS41667.1| Phage terminase, large subunit, PBSX [Methylobacterium extorquens
AM1]
Length = 422
Score = 73.4 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 42/324 (12%), Positives = 93/324 (28%), Gaps = 34/324 (10%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG K+ A ++ +T+P + V+C + + ++ +S + L + FE+
Sbjct: 23 GGRGGSKSWGAARALIIQAATKP-MRVLCAREFQNSINESVHQLLSNQIEELGLRSAFEI 81
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + +G++ + + + + G +EA
Sbjct: 82 QDKRI-------------IGLNGSEFIFSGLRHKIDSLKSTEGI-----DVCWVEEAQTV 123
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ ++ + + + W+ + + P D K +++
Sbjct: 124 SNASWSKLIPTIRKDGSE-IWVTFNPELDTDPTYQRFVVNPPADAKVVRLNWSDNPWFPE 182
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP---CPDPYAPLIM 320
D D G Q + + E A D P+
Sbjct: 183 VLRREKDELAARDPDAYLNVWEGATRQTLDGAVYAKEMREAAAEGRIGRVQYDRTKPVHT 242
Query: 321 GCDIAEEGGDNTVVVLRRG----PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
D+ D T + + + + S+ + + Y D + DA
Sbjct: 243 AWDLGWA--DCTSIWFAQAVGGEFRVIDFLEVSQRAIPDIVKTLQSKGYVYGNDYLPHDA 300
Query: 377 N-----NTGARTCDYLEMLGYHVY 395
+ G + LG +V
Sbjct: 301 DSSTLQGNGRTIAQMMRSLGRNVI 324
>gi|192289100|ref|YP_001989705.1| hypothetical protein Rpal_0670 [Rhodopseudomonas palustris TIE-1]
gi|192282849|gb|ACE99229.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
TIE-1]
Length = 441
Score = 73.4 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 62/441 (14%), Positives = 115/441 (26%), Gaps = 51/441 (11%)
Query: 85 GRGIGKTTLNAWLV----LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
R GKT + + L+ E Q K + + +
Sbjct: 28 ARQTGKTFTTTLEITDDCFEAAVQSRRERWVILSRGERQAKEAMDEGIKR---------- 77
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-E 199
Q+ L D + + + + P +++
Sbjct: 78 -HCQAYQLGFDAQEFDWQGQAGSYKALEVTLPHGSRITALPANPDTARGFSSNVFLDEFA 136
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID-TRTV 258
I + ++ + +TS KFYE+ D W R +D + V
Sbjct: 137 FHKDSREIWKALFPVISAGHN---LRVTSTGNGKDNKFYELATGKDDVWSRHFVDIYKAV 193
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN-REPCPDPYA- 316
E P + + A D D E ++ + ++I + R P Y
Sbjct: 194 EDGLPRNIDELKAGINDD-DAWAQEYELKWLDEASAWL-SYDLITACEDPRAGDPSGYRN 251
Query: 317 -PLIMGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKIS--GLVEKYRPDA 371
P +G DI D V+ + G V+ + + ++ +YR
Sbjct: 252 NPCFVGRDIGR-RNDLHVIWVWELIGDVLWERERIEQKRATFAAMDAAFDDVMTRYRVAR 310
Query: 372 IIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL- 429
ID G + + + G V VL + L + E +
Sbjct: 311 ACIDQTGMGEKVVEDAQAKWGSVVEGVLF--TIPNKLI-------LATAGKEAFEDRKVR 361
Query: 430 --INHSGLIQNLKSLKSF-IVPNTGELAIESKRVKGAKSTDYSDGL---MYTFAENPPRS 483
L +L L+ E + D + ++ + P
Sbjct: 362 IREGDVALRADLHKLRKVASATGAPRFVAE----RDDDHADRTWAAFLGIHAAGDGVPAY 417
Query: 484 DMDFGRCPSYQYEGVDLLIER 504
D P + R
Sbjct: 418 DGYQSARPDAGSNLFETSGGR 438
>gi|213419227|ref|ZP_03352293.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 442
Score = 73.0 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/377 (10%), Positives = 90/377 (23%), Gaps = 30/377 (7%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA----ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
Q+E +E V + E K + R IG T A L +
Sbjct: 66 QIEKLEEVFHASMFDYQRHWFEAGKINRIRNLLKSRQIGATFYFAREALIDALLTGRNQI 125
Query: 111 ICLANS-ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS--LHPAPWYSDVLHCSLGIDSK 167
A+ + + + +K + + + + + +
Sbjct: 126 FLSASKAQAHVFKQYIIDFAKEVEVELKGDPMVLPNGAALYFLGTNARTAQSYHGNLYLD 185
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + + + + H + + +S T A +
Sbjct: 186 EYFWIPKFQELRKVASGMAIHKKWRQTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDI 245
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ D R + + + R D + + +
Sbjct: 246 DLTHSNLARGLLC----PDGQYRQIVTVEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCE 301
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE-EGGDNTVVVL 336
F F + ++ + + +G D A+ ++ +
Sbjct: 302 FIDDLASVFPLSELQACMVDSWEVWTDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCV 361
Query: 337 RR--------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
I W D R + I L ++Y I ID+ G ++
Sbjct: 362 VIAPPTVPGGKFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYLNVK 421
Query: 389 MLGYHVYRVLGQKRAVD 405
V + +
Sbjct: 422 DFFPAVREFVYNPNVKN 438
>gi|152990214|ref|YP_001355936.1| phage terminase, large subunit [Nitratiruptor sp. SB155-2]
gi|151422075|dbj|BAF69579.1| phage terminase, large subunit [Nitratiruptor sp. SB155-2]
Length = 398
Score = 73.0 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/380 (10%), Positives = 102/380 (26%), Gaps = 42/380 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG K+ A +L L S +P + ++C + + ++ +S +
Sbjct: 26 GGRGSAKSYNFALTLLVLASKQP-LRILCAREFQNSISDSVHRLLSDLIDK--------- 75
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
H + + + ++ + + G +EA
Sbjct: 76 ----YHLPNFEVTQREIRNKLTGSEFIFKGLRHNIQSIKSTEGV-----DICWVEEAQTV 126
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ ++ + + + W+ + + P + ++ +
Sbjct: 127 SEESWQILIPTIRKPGSE-IWVSFNPYFVEDPTYQRFVVNPPSNAFVKKVTYKDNPYFPD 185
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
E + D + G+ ++ + G D
Sbjct: 186 VLREEMEYDKKTDYERYMHVWEGECITYSDAQVF----RDKFAIDTIDVGNSKEVYYGAD 241
Query: 324 IAEEGGDNTVVVLRRGPVIEHLF---DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
T+V + ++ L T + +V II A+++
Sbjct: 242 WGFAVDPTTLVRVWVVGEYLYIDQEAYKVGCTLDDTPSLFDKIVGSRSH---IIRADSSR 298
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLK 440
T ++L G+ + +V+ E + N +
Sbjct: 299 PETINFLNSRGFTIKPAPKWPGSVEDGI------EFMKSFKKIIIN---PNCKHTAEEF- 348
Query: 441 SLKSFIVPNTGEL--AIESK 458
L S+ + G++ +E K
Sbjct: 349 RLYSYKTNSAGDILPQLEDK 368
>gi|171915351|ref|ZP_02930821.1| hypothetical protein VspiD_29290 [Verrucomicrobium spinosum DSM
4136]
Length = 451
Score = 73.0 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 59/418 (14%), Positives = 112/418 (26%), Gaps = 63/418 (15%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GK +A ++ R + + A SE Q TL W E
Sbjct: 29 SRQTGKDFSSAAEIVRDCKLRDKTTWMIAAPSERQSLETL----------AKCGEWSEAF 78
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT- 203
L+ D L ++ R + P ++ E +
Sbjct: 79 DLASEGIREERDGPEALLKQGEIKFANGSRVIAV--PGRPDTVRGFSAN-VLMTEFAFFE 135
Query: 204 -PDVINLGILGFLTE--RNANRFWIMTSNPRRLSGKFYEIFNKP---LDDWKRFQIDTRT 257
PD IL +T R + + + P K ++++ K W + ++
Sbjct: 136 DPDATWRAILPSITNPLRGGEKKVRLITTPNGQGNKAHDLWTKENSTKHKWSKHKVTIHD 195
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEALNREPCPDP 314
+ D + E +F +P +I E A D
Sbjct: 196 AVAAGLPVDPEELRAMLDDPEGWAQEYECEFLDS-AGVLLPYELIATCEAAEATTTQADA 254
Query: 315 YA------PLIMGCDIAEEGGDNTVVVLRRGP----VIEHLFDWSKTDLRTTNNKISGLV 364
+ PL G D A + D +V+ + V + + +S
Sbjct: 255 FWNARQQFPLYAGWDFARKK-DLSVLWTAQKVGPIKVTKEVLIMRGMSTPAQVELVSH-- 311
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRN---------RRTE 415
+ +D G D L + D + +
Sbjct: 312 RLKHITRLCLDYTGAGVGAGDLLVE--------KFGEWNFDKHQFGKVELCTFTDSLKRD 363
Query: 416 LHVKMADWLEFAS--LINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD-YSD 470
+ + LE + + ++L S+ V G + + S + ++D
Sbjct: 364 IFPSLKVALEQREFLVPATREIREDLHSMYRV-VTAAGNVTY-----RAPHSPNGHAD 415
>gi|171914351|ref|ZP_02929821.1| hypothetical protein VspiD_24270 [Verrucomicrobium spinosum DSM
4136]
Length = 450
Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 58/418 (13%), Positives = 111/418 (26%), Gaps = 63/418 (15%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GK +A ++ R + + A SE Q TL W E
Sbjct: 28 SRQTGKDFSSAAEIVRDCKLRDKTTWMIAAPSERQSLETL----------AKCSEWSEAF 77
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT- 203
L+ D L ++ R + P ++ E +
Sbjct: 78 DLASEGIREERDGPEALLKQGEIKFANGSRVIAV--PGRPDTVRGFSAN-VLMTEFAFFE 134
Query: 204 -PDVINLGILGFLTE--RNANRFWIMTSNPRRLSGKFYEIFNKP---LDDWKRFQIDTRT 257
PD IL +T R + + + P K ++++ K W + ++
Sbjct: 135 DPDATWRAILPSITNPLRGGEKKVRLITTPNGQGNKAHDLWTKENSTKHKWSKHKVTIHD 194
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEALNREPCPDP 314
+ D + E +F + +I E PD
Sbjct: 195 AVAAGLPVDPEELRAMLDDPEGWAQEYECEFLDA-AGVLLSYELIGSCEAPEATTTQPDA 253
Query: 315 YA------PLIMGCDIAEEGGDNTVVVLRRGP----VIEHLFDWSKTDLRTTNNKISGLV 364
+ PL G D A + D +V+ + V + + +S
Sbjct: 254 FWAARPQFPLYAGWDFARKK-DLSVLWTAQKIGPLLVTKEVLVMRGMSTPKQVELVSH-- 310
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRN---------RRTE 415
+ +D G D L + D + +
Sbjct: 311 RLKNITRLCLDYTGAGVGAGDLLVE--------KFGEWNFDKHQFGKVELCTFTDSLKRD 362
Query: 416 LHVKMADWLEFASL--INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD-YSD 470
+ + +E L + ++L S+ V G + + S + ++D
Sbjct: 363 IFPSLKVAMEQRGLLVPGTREIREDLHSMYRV-VTAAGNVTY-----RAPHSPNGHAD 414
>gi|67920466|ref|ZP_00513986.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
gi|67857950|gb|EAM53189.1| conserved hypothetical protein [Crocosphaera watsonii WH 8501]
Length = 244
Score = 72.6 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 68/240 (28%), Gaps = 37/240 (15%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-------------GISVI 111
H +P+ F+ + GR GK+ L + P +V+
Sbjct: 9 HKSQLEVFNDPQKFQVLVC-GRRFGKSHLQVTKHVIDCLMFPKLMPGYNVKQQTMETAVL 67
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ Q + LW + K L P ++ D++ L ++
Sbjct: 68 VGMPTLKQARKILWKPLVKTLENCPYVDKISRSDYTIRFKGNRPDIILAGLNDNAG---- 123
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMTSNP 230
+ DE P VI+ I+ + + + + T P
Sbjct: 124 -------------DRARGLKLWRVCIDEVQDVRPSVIDAVIIPAMAD-TPHSRALFTGTP 169
Query: 231 RRLSGKFYE--IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
+ + Y + DDWK + T T I E R + E Q+
Sbjct: 170 KGKNNHLYNLFTMERDNDDWKSYNFPTWTNPLISKDEVERARKRLS--PRLFSQEFEAQW 227
>gi|156564098|ref|YP_001429607.1| terminase large subunit [Bacillus phage 0305phi8-36]
gi|154622795|gb|ABS83675.1| terminase large subunit [Bacillus phage 0305phi8-36]
Length = 635
Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 62/534 (11%), Positives = 130/534 (24%), Gaps = 119/534 (22%)
Query: 18 LMWSDEIKLSFSNFVLHFFPWGEKGTP-----LEGFSAPRSWQLEFMEVVDAHCLNSVNN 72
+W E GEK T L P+ W E ++ +
Sbjct: 18 QLWETEYDDLIVRTKKWARSTGEKFTEEELHYLAILDKPKFWAAETLKWFCRDYQEPMLQ 77
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI------SVICLANSETQLKTTLWA 126
+ + + GR +GKT ++LW T+P ++ +A E Q+ ++
Sbjct: 78 EMADSKRTVLRLGRRLGKTETMCIMILWHAFTQPNKGPNNQYDILIIAPYEEQV-DLIFK 136
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
+S+ + + + + T +
Sbjct: 137 RLSQLIDMSGDVNPSR---------------DIDKHIELPNGTVIHGITAGSKSGSGAAN 181
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE------- 239
I+ DE + I+ E I+ S P +Y+
Sbjct: 182 TRGQRADLIVLDEMDYMGESEITNIMNIRNEAPERIKMIVASTPSGRRDSYYKWCVGATK 241
Query: 240 ---------------------------------------IFNKPLDDWKRFQIDTRTVEG 260
+ + W +
Sbjct: 242 TYAQDDELTRQNGGRVTYNVKMKPWKTLADGSYELNQLGDKMREGNGWTTIHAPSTVNPE 301
Query: 261 IDP-------SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ ++ E + EV +F + F+ + I+ A++
Sbjct: 302 LLKVNPDTGLTYIEELRLDLTEMR--FIQEVMAEFGESISGVFLKKH-IDIAISHGERLK 358
Query: 314 -----------PYAPLIMGCDIAEEGGDNTVVVLRRGPV-------IEHLFDWSKTDLRT 355
P I+G D + D +V + P +
Sbjct: 359 LDYAKKKTDRVKKGPRILGVDWDKRKADTNMVGVEWDPQEQLFIPFFRKAIPRGEFTYSN 418
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYL--------EMLGYHVYRVLGQKR----- 402
+ I + D ++IDA G + L + L + R+ ++
Sbjct: 419 AVDAIKEAHYDFDFDYMMIDA-GHGEYQIEQLHIWADKYQKGLAKRIIRLNLSEKVKVMD 477
Query: 403 AVDLEFCRN-RRTELHVKMADWLEFASL---INHSGLIQNLKSLKSFIVPNTGE 452
+ + N + + E + I +S + + G
Sbjct: 478 PITKKMESNHIKPFMVNNAVLMFEREMVALAPKDRDTIVQFESYEVKSWGSDGR 531
>gi|94497317|ref|ZP_01303888.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
gi|94423180|gb|EAT08210.1| hypothetical protein SKA58_07183 [Sphingomonas sp. SKA58]
Length = 437
Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/404 (14%), Positives = 115/404 (28%), Gaps = 47/404 (11%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AGRG GKT A V + P + + S + ++ + S L++ P+
Sbjct: 58 AGRGFGKTRAGAEWVRGIAEADPAARIALVGASLGEARSVMVEGESGLLAIAPHWAR-PA 116
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ +L W + + G DE +
Sbjct: 117 YAPALRRLTWPNGAVAM-----------------LFGAADPEGLRGPQFSHGWADEIAKW 159
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE-GID 262
+ R ++ + R + + DD + T E +
Sbjct: 160 ASGEAAWHNLMMGMRLGRDPRVLVTTTPRPVPLVRSLVARDGDDVVVTRGRTADNEANLA 219
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
P F + A YG + + R E+ G+ ++ + +IE+ ++
Sbjct: 220 PGFVAAMTAGYG-GTRLGRQELDGELIEEVEGALWTRALIEQCRVVHVPGVLTRVVVAVD 278
Query: 323 DIAEEGGDNTVVVL-----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
A GGD +V+ + S ++ + D ++ +AN
Sbjct: 279 PPASVGGDACGIVVAGMGGDGRAYVIADASVSGARPEGWARAVAAAAMVHGADRVVAEAN 338
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW---LEFASLINHSG 434
N GA L + L R E + + +
Sbjct: 339 NGGAMVESVLRAAEKTLPVKLVHASRGKAA-----RAEPVAALYEAGRVAHRGAFPELED 393
Query: 435 LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ L + ++ P +S D +D L++ +E
Sbjct: 394 EMCGLLAGGGYVGP--------------GRSPDRADALVWAMSE 423
>gi|34419588|ref|NP_899601.1| terminase DNA packaging enzyme large subunit [Vibrio phage KVP40]
gi|13661164|dbj|BAB41133.1| gp17v [Bacteriophage KVP40]
gi|34333269|gb|AAQ64424.1| terminase DNA packaging enzyme large subunit [Vibrio phage KVP40]
Length = 600
Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 57/451 (12%), Positives = 114/451 (25%), Gaps = 65/451 (14%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ + F ++ PR +Q E + + +F
Sbjct: 98 KCRDDIVYFAENYCS-IVHIDLGNIKMVPRPYQKEML--------EVADRSRFSIFLL-- 146
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R +GKTT+ + + LA+ + L V + LP+
Sbjct: 147 --PRQLGKTTIMGIFLAHYLVFNEDKEAGILAHKGSMSMEVLER-VKNVIENLPD----- 198
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
P + ++ D+ I DE +
Sbjct: 199 ------FLQPGIEEWNKGNITFDNGCKLGAY-------ASGSDAVRGKSFSMIYVDECAF 245
Query: 203 TP--DVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
P D + + + T N + + + ++ + R V+
Sbjct: 246 VPGFDDFWKATFPVISSGEESKVVLTSTPNGLNHYHDMWNAAVQGISTFEPYTTTWRAVQ 305
Query: 260 G-------IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE--- 309
D + E F + I + + +
Sbjct: 306 NRLYKDGEFDDGEAFKRETIGNTSREAFSQEHLCNFL-GTAGTLINGFKLSKMKGIDVVK 364
Query: 310 --------PCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVI----EHLFDWSKTDLRTT 356
P+ I+ D +E G D + + +F +KT
Sbjct: 365 DSDGWCVYKKPEEGHKYILTVDTSEGRGQDYHALHMIDVTSYPFEQVAVFHDNKTSHLLL 424
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYH--VYRVLGQKRAVDLEFCRNRR 413
I +Y + + +TG + L L Y + L N++
Sbjct: 425 PAIIMKQAYRYNEAYVYCEIASTGELVMNELFRDLEYENVIMEERASGGRRGLGLKPNKK 484
Query: 414 TEL--HVKMADWLEFASL-INHSGLIQNLKS 441
T+ + D +E L INH ++ +
Sbjct: 485 TKAIGCSTLKDLIEKDQLKINHIPTLKEFHT 515
>gi|324115391|gb|EGC09344.1| terminase [Escherichia coli E1167]
Length = 492
Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 44/376 (11%), Positives = 87/376 (23%), Gaps = 33/376 (8%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
H + I R IG T + L + A S+TQ
Sbjct: 118 EYQLHWYRAGLEHRIRD----ILKSRQIGATFYFSREALLRALKTGHNQIFLSA-SKTQA 172
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQ-------SLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ E + L + + + + + + +
Sbjct: 173 Y--VFREYIIAFARLVDVDLTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIP 230
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + + + + ++ D A+ + +
Sbjct: 231 NFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHN 290
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + I+ G E + D + +F
Sbjct: 291 ALAGGLLCADGQWRQIV-TIEDALKGGCTLFDIEQLKRENSADD--FKNLFMCEFVDDKA 347
Query: 294 DSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEGGDNTVVVL------R 337
F + ++ + Y P+ +G D + G VVL
Sbjct: 348 SVFPFEELQRCMVDTLEEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAG 407
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I W D T I L EKY + I IDA G + +
Sbjct: 408 GKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVRSFYPAARDI 467
Query: 398 LGQKRAVDLEFCRNRR 413
+ + +R
Sbjct: 468 RYTPEMKNRNGAQGKR 483
>gi|24112089|ref|NP_706599.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30062202|ref|NP_836373.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|24050918|gb|AAN42306.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30040447|gb|AAP16179.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|281600053|gb|ADA73037.1| putative bacteriophage protein [Shigella flexneri 2002017]
gi|332768291|gb|EGJ98476.1| hypothetical protein SF293071_0835 [Shigella flexneri 2930-71]
Length = 179
Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 44/149 (29%), Gaps = 25/149 (16%)
Query: 295 SFIPLNIIEEALNREPCP--DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD 352
+ I L+ IE A++ +P +G D+A+ G D V R G V+ +W +
Sbjct: 10 AIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKE 69
Query: 353 LRTTNNKISGL-VEKYRPDAIIIDANNTGARTCDYLEMLG----------YHVYRVLGQK 401
+ R I+ D+ GA + V
Sbjct: 70 DELLKSCQRTYQAALEREADIVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNA 129
Query: 402 RA------------VDLEFCRNRRTELHV 418
A + +F N + +
Sbjct: 130 GAGVHEPDDEYNGIPNKDFFANLKAQAWW 158
>gi|258543723|ref|YP_003189156.1| hypothetical protein APA01_26850 [Acetobacter pasteurianus IFO
3283-01]
gi|256634801|dbj|BAI00777.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
gi|256637857|dbj|BAI03826.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
gi|256640911|dbj|BAI06873.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
gi|256643966|dbj|BAI09921.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
gi|256647021|dbj|BAI12969.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
gi|256650074|dbj|BAI16015.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
gi|256653064|dbj|BAI18998.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256656118|dbj|BAI22045.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
Length = 469
Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/448 (12%), Positives = 128/448 (28%), Gaps = 65/448 (14%)
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG---------ISVICLANSETQL 120
+ P + A+ GR GK+ + A L L + + +V +A Q
Sbjct: 54 TDLPLEAFRRAALICGRRAGKSRVLALLGTCLATLKDYRPYLSAGEVATVGVIAADRKQA 113
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+T + V +SL+P + + ++ R
Sbjct: 114 RTI-FRYVRGLISLVPEMEAEVTRET----------DEIIEMAGRRVVIEIGTASFRATR 162
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
T+ +D ++ + I + L ++ S+P G ++
Sbjct: 163 GYTYAAVLCDEIAFWRDDSSANPDEEILRALRPGLATI-PGSMLLLASSPYARRGVLWKT 221
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDIDSFIPL 299
F + + + + + + D G + DI SF+
Sbjct: 222 FKRYYGQDGATTLVWKAATREMNPEFDVQEEQEAYEEDPAAAAAEYGAEFRSDIASFVAP 281
Query: 300 NIIEEAL---NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
++E E + + D + D+ + + + D
Sbjct: 282 EVVEACTTVGRYELPRNSQHRYVAFVDPSGGSSDSMTLAIAH-----------QEDECAV 330
Query: 357 NNKISGLVEKYRPDAIIID------ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCR 410
+ + + P++ +++ + + T D G R +K ++ +
Sbjct: 331 LDLVREKKAPFSPESTVVEFCNTLKSYGINSVTGD---RYGGEWPREQFRKNGIEYKLSE 387
Query: 411 NRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAK------ 464
R++L+ + L + L + +G +E + +G K
Sbjct: 388 KVRSDLYRDLLPVLNSGKV--------ELLDIPVLSRQLSG---LERRTSRGGKDSIDHA 436
Query: 465 ---STDYSDGLMYTFAENPPRSDMDFGR 489
D ++ + A + +F
Sbjct: 437 PGGHDDVANAVAGAIALTTTKKPFNFQS 464
>gi|83945577|ref|ZP_00957923.1| Phage DNA Packaging Protein [Oceanicaulis alexandrii HTCC2633]
gi|83850943|gb|EAP88802.1| Phage DNA Packaging Protein [Oceanicaulis alexandrii HTCC2633]
Length = 410
Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/439 (12%), Positives = 109/439 (24%), Gaps = 55/439 (12%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS-VICLA 114
++ P + GRG GKT A + + G + +A
Sbjct: 10 RRVANSWAFWARDAQKPPPGDWRIWLFLGGRGAGKTRAGAEWI--RAQVKAGCRRIALVA 67
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ + ++ + + S D +
Sbjct: 68 PTFSDVREVM------------------VSGPSGFLNIGEEDERPRYEASRHRLIWPNGA 109
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRR 232
+ G DE + P + L R I T+
Sbjct: 110 EAHGFSSEDPDGLRGPQFDCAWVDEFAAWTRPQETLDMLGLGLRLGEDPRLMITTTP--- 166
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
+ K + P F + RYG S + R E+ G
Sbjct: 167 RPIPALKALLKQAGVVMTHAATEANAANLAPGFVAAMTDRYGA-SRLARQELEGVLIDDP 225
Query: 293 IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL-------RRGPVIEHL 345
+ ++I++AL P +P ++ A GD +++ R ++
Sbjct: 226 DGALWTRDLIDQALGL-PAFEPERVVVAVDPPASATGDECGIIVAGVAGLGRDARLVVFK 284
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+ +++ E D ++ +AN G L+ + L
Sbjct: 285 DMSLQARPEVWAARVAEAFEAVDADWVVAEANQGGDMVRAVLQAAAPDLPIRLVHASRGK 344
Query: 406 LEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
L+ + + + ++G S
Sbjct: 345 RAR-AEPVAALYARGRVR-HAGRFPALEDQMCAFGAP-----DHSG-------------S 384
Query: 466 TDYSDGLMYTFAENPPRSD 484
D D L++ A P++
Sbjct: 385 PDRVDALVWAIAALTPQAA 403
>gi|227500282|ref|ZP_03930349.1| terminase [Anaerococcus tetradius ATCC 35098]
gi|227217568|gb|EEI82880.1| terminase [Anaerococcus tetradius ATCC 35098]
Length = 466
Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 114/364 (31%), Gaps = 53/364 (14%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ + ++ + A + + + + R GKT + LW + G ++
Sbjct: 36 PYPWQEKLIKDIFAVNDDGLWTHSKFGYAV----PRRNGKTEIVYMAELWFLM--DGKNI 89
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
I A+ + ++ + ++ K+L + + + L
Sbjct: 90 IHTAHRISTSHSS-FKKLKKYLEKM------GLVDKVDFKSIKAKGQEMIELIKTGGVIQ 142
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
RT + + F ++ DEA + + +T+ + + + P
Sbjct: 143 FRTRTETGGLGEGFD--------LLVIDEAQEYTEGQESALKYTVTDSDNPMILMCGTPP 194
Query: 231 RRLSG--------KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG------------II 270
+SG K + W + + T ++++ +
Sbjct: 195 TLVSGGTVFSKYRDLILSGGKNHNGWAEWSVSEMTNPYDIDAWYKTNPSMGYKLRERAVE 254
Query: 271 ARYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
G D ++ G + + + S I L+ L R P + I
Sbjct: 255 EEIGPDETDFNIQRLGYWVKYNQKSVISKLDWDRLKLTRLPSLVGK----LHVGIKYGND 310
Query: 330 DNTV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V + ++ + +R N+ I ++K +P +++ID GA D
Sbjct: 311 GRNVALSIAVKTLSNRIFIESIDCQSIRNGNDWIVDFLKKTKPISVVID----GASRQDI 366
Query: 387 LEML 390
LE
Sbjct: 367 LEEQ 370
>gi|90419122|ref|ZP_01227033.1| phage terminase large subunit [Aurantimonas manganoxydans SI85-9A1]
gi|90337202|gb|EAS50907.1| phage terminase large subunit [Aurantimonas manganoxydans SI85-9A1]
Length = 411
Score = 71.9 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 55/429 (12%), Positives = 98/429 (22%), Gaps = 67/429 (15%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS------TRPGISVICLANSETQL 120
S P + + GRG GKT A V + + RP + +A +
Sbjct: 14 RRSQLPPPGHWRQWLLIGGRGSGKTRAGAEWVRAMAAGAPPIAARPHGRIALIAETLGDA 73
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+ + A S ++ + +
Sbjct: 74 REVMIAGESGIVAAS-------------------VEGRPVYEVSRRRLVFPNGAIAQVFS 114
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL---TERNANRFWIMTSNPRRLSGKF 237
+ A DE + V L + T+ PR
Sbjct: 115 SEDPDALRGYQFDAAWGDEFAKW--VHGEACFDNLQFGLRLGVRPRALFTTTPR--PIPL 170
Query: 238 YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
+ + P F + ARYG S + R E+ G + D+
Sbjct: 171 LKQLMADAGTASTHMRTAENAANLAPGFLAAMEARYG-GSRLGRQELEGLMLEAREDALF 229
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVV-----VLRRGPVIEHLFDWS 349
+ I+ A R +++ D A D + +
Sbjct: 230 DVAAIDAARVRVAP--ELRRVVVAVDPPATATTRSDACGIIAAGHAADGTIYVLADASRR 287
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
L E+ D I+ + N G + V +
Sbjct: 288 GAKPHQWAGAAVALFERLEADRIVAEVNQGGDMVEAVIRA---CAPSVPFRAVRASRGKW 344
Query: 410 RNRRTELHVKMAD--WLEF-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKST 466
R E + + + + G G +S
Sbjct: 345 --LRAEPVAALYEQGRVRHAGRFPELEDEMA--------DFGPDGL--------SGGRSP 386
Query: 467 DYSDGLMYT 475
D D L++
Sbjct: 387 DRLDALVWA 395
>gi|296117130|ref|ZP_06835723.1| phage terminase, large subunit [Gluconacetobacter hansenii ATCC
23769]
gi|295976225|gb|EFG83010.1| phage terminase, large subunit [Gluconacetobacter hansenii ATCC
23769]
Length = 404
Score = 71.9 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 77/297 (25%), Gaps = 27/297 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A +++ + + RP + ++C + + ++ +S ++ L WF +
Sbjct: 26 GGRGSGKSWTVARVIVAMAAARP-LRILCCREYHSSMADSVRRLLSDQVAALGLGPWFRI 84
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + E + +EA
Sbjct: 85 R-------------ENLLTTACGSEILFRGLGRNVEAIKST-----EKVDICWVEEAQSL 126
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+L + + ++ + D + R P
Sbjct: 127 SRASLDILLPTIRAPGSEIWFTYNPEREDAPMHQMMRALRDDPDAIVRHVGWRDNPWFPP 186
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
D D G+ + + +E A P P A L G D
Sbjct: 187 ELDAERRRMLRHDPDSYDHVWEGECRTRSDAVVFGGH-VEVAEFTTP---PDARLYFGVD 242
Query: 324 IAEEGGDNT---VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+ ++H + ++ V R + DA+
Sbjct: 243 WGFARDPTVMVRCFIADDIVHVDHEVFATGVEMDDLAALF-DHVPGAREWPVRADAS 298
>gi|99080898|ref|YP_613052.1| hypothetical protein TM1040_1057 [Ruegeria sp. TM1040]
gi|99037178|gb|ABF63790.1| DNA packaging protein Gp17 (Terminase) [Ruegeria sp. TM1040]
Length = 425
Score = 71.9 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 58/421 (13%), Positives = 107/421 (25%), Gaps = 73/421 (17%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ S G V + + Q++ + S L
Sbjct: 33 ILGGRGAGKTRAGAE---WVRSQVEGAGPFGVGSARRVALVGETYDQVRDVMIHGDSGIL 89
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ P E ++ +
Sbjct: 90 ACSPPDRRPEWRAGERRLL------------------WPNGASAQAFSASDPEVLRGPQF 131
Query: 193 MAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + L A R + T+ PR + + +
Sbjct: 132 DAAWVDELAKWRRAQEAWDMLQFALRLGTAPRVCV-TTTPRNV--PLLKGLLQSPSTVTT 188
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ PSF + ARY S + R E+ G + +++ E R+
Sbjct: 189 HAPTEANSANLAPSFLSEVRARYA-GSRLARQELDGVLLADVDGALWSSDMLAEIQRRDT 247
Query: 311 CPDPYAPLIMGCDI---AEEGGDNTVVVLR----------RGPVIEHLFDWSKTDLRTTN 357
+++ D A +G D +++ +
Sbjct: 248 P--RLDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISSWRAYVLADHTVQGLGPTGWA 305
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ Y+ D ++ + N GA L + V R E
Sbjct: 306 RAAIAARDAYKADRLVAEVNQGGALVGTVLRQVDPLVPFTPVHASKGKAA-----RAEPV 360
Query: 418 VKMADWLEFASLINHSGLIQN--LKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + L + L + + + +G S D D L++
Sbjct: 361 AALYEQGRVHHAPGLQELEEQMCLMTAQGY---------------RGDASPDRVDALVWA 405
Query: 476 F 476
Sbjct: 406 L 406
>gi|222149246|ref|YP_002550203.1| hypothetical protein Avi_3048 [Agrobacterium vitis S4]
gi|221736230|gb|ACM37193.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 452
Score = 71.9 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 56/409 (13%), Positives = 109/409 (26%), Gaps = 49/409 (11%)
Query: 85 GRGIGKTTLNAWL----VLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
R GKT + + L+ E Q + + E K
Sbjct: 28 ARQTGKTFTTTLETVDTCFEAAVSGKRERWVILSRGERQAREAM-NEGIKVH-------- 78
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-E 199
++ L D S + + + P +++
Sbjct: 79 --CKAYDLAFQEAEFDWEGESGTHKALEVTLPHGSKITALPANPDTARGFSANVFLDEFA 136
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID--TRT 257
I + +++ +TS P S KFYE+ P+DD + +
Sbjct: 137 FHKDSQQIWRALFPVISKG---WNIRVTSTPNGKSNKFYELATGPIDDPWSRHVVDIYQA 193
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN---REPCPDP 314
V P E + A D D E ++ + ++I + +P
Sbjct: 194 VRDGLPRDIEELRAGLA-DEDSWAQEFELKWLDEASAWL-SYDLISSCEDERAGDPEGYQ 251
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRR--GPVI--EHLFDWSKTDLRTTNNKISGLVEKYRPD 370
+G DI D V+ + G V+ + + + ++ +YR
Sbjct: 252 GNVCFVGRDIGR-REDLHVIWVWEQIGDVLWERERIEQKRATFAEMDEAFDDVMTRYRVG 310
Query: 371 AIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
ID G + + + G V VL + + + + E ++
Sbjct: 311 RACIDQTGMGEKVTEDAQIRYGSRVEGVLFTGPN---------KLVMATRGKERFEDRTV 361
Query: 430 IN---HSGLIQNLKSLKSF-IVPNTGELAIESKRVKGAKSTDYSDGLMY 474
L +L L+ E + D +
Sbjct: 362 RISQGDQKLRADLHKLRKVASATGAPRFVAE----RDDDHADRTWAAFL 406
>gi|99080642|ref|YP_612796.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
gi|99036922|gb|ABF63534.1| hypothetical protein TM1040_0801 [Ruegeria sp. TM1040]
Length = 416
Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 55/401 (13%), Positives = 107/401 (26%), Gaps = 46/401 (11%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A G G GKT + + P A + ++ T W V + L
Sbjct: 24 AYVGGFGSGKTYVGCLDLGLFAGQHPKTVQGYFAPTYRDIRDTFWPTVDEAAHSLGFTTK 83
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + S + + D A
Sbjct: 84 VKSADKEVEFYRGRSYYGTTICRSMDDPGGIVGFKIARALVDEIDILSKDKAQAAWRKII 143
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE- 259
+ V+ + G +T+ P + +P ++ Q T E
Sbjct: 144 ARMRLVLPGVVNG----------IGVTTTPEGFRFVYDSFKREPKSNYSMVQASTYENEA 193
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ P + ++ Y + + + + G+F + + P PL
Sbjct: 194 FLPPDYISTLLEDYPEE--LIKAYLMGEFVNLTSGTVY-RSYDRLRHRSTQSIQPREPLH 250
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII--DAN 377
+G D G +VV ++RG + L+ T + I L ++Y + I DA+
Sbjct: 251 IGQDF-NVGNMASVVFVQRGE--DWHAVDELQGLQDTPHLIEVLCDRYEGHHLTIYPDAS 307
Query: 378 NTGARTC-------DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
+ +T + L G+ + D N E L
Sbjct: 308 GSSRKTVNASTSDIELLRKAGHAIRAPSTNPAVKDRILAVN----------TAFENGRLF 357
Query: 431 NHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGA-KSTD 467
++ +++ E + G D
Sbjct: 358 VNALRCKAYAEALEQQAYDKNG------EPDKSAGLDHHPD 392
>gi|114707517|ref|ZP_01440413.1| Phage DNA Packaging Protein [Fulvimarina pelagi HTCC2506]
gi|114537076|gb|EAU40204.1| Phage DNA Packaging Protein [Fulvimarina pelagi HTCC2506]
Length = 448
Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 53/438 (12%), Positives = 105/438 (23%), Gaps = 63/438 (14%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS------TRPGIS 109
M + P + + GRG GKT A + L + P
Sbjct: 40 RRVMPEWWRVARSEQLPPREAWRQWLLIGGRGSGKTRAGAEWITGLALGLSPFASLPHRR 99
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ +A + + + + +
Sbjct: 100 IALVAETLADAREVM-------------------IEGESGLKAIVGNERPVFEVTRRRLV 140
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMT 227
T + A DE P+ ++ L + T
Sbjct: 141 FANGATAQIFSSEDPDSIRGYQFDAAWGDELGKWVKPEESFDNLMLALRL-GERPRALFT 199
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ PR + + VE + P F E + RY + R E+ G+
Sbjct: 200 TTPRNV--PILKRLMADPQTAVTRMRTAENVENLAPGFLEAMARRYD-GTRFGRQELDGE 256
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT-----VVVLRRGP-- 340
D ++E +R P +++ D + V + G
Sbjct: 257 LLDDRKDGLFERALVE--RSRVTNAPPLKRIVVAVDPPATSTKRSDACGIVAAGKDGEGA 314
Query: 341 -VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
+ L+E+ D I+ + N G L + +V
Sbjct: 315 IYVLADESRRAVRPEKWARCAVALLERLEADRIVAEVNQGGDMVEAVLRTVAPNV---PY 371
Query: 400 QKRAVDLEFCRNRRTELHVKMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
+ R E + + + + +++ + G
Sbjct: 372 RAVRATRGKWT--RAEPVAALYEQGRVRHVGVFPE---LEDEMA----DFGPDGL----- 417
Query: 458 KRVKGAKSTDYSDGLMYT 475
+S D D L++
Sbjct: 418 ---SDGRSPDRLDALVWA 432
>gi|87201130|ref|YP_498387.1| hypothetical protein Saro_3118 [Novosphingobium aromaticivorans DSM
12444]
gi|87136811|gb|ABD27553.1| protein of unknown function DUF264 [Novosphingobium aromaticivorans
DSM 12444]
Length = 440
Score = 71.5 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 64/445 (14%), Positives = 118/445 (26%), Gaps = 69/445 (15%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P W S P + + AGRG GKT L A V + P +
Sbjct: 34 PHDW--------AVWGRQSQQAPPSDWRVWLVMAGRGFGKTRLGAEWVRKIAEEDPEARI 85
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ S + ++ + S LS+ + S+ W +
Sbjct: 86 ALVGASLHEARSVMVEGESGLLSIDAPWRR-PVFESSVRRLVWPNGAQAF---------- 134
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-------VINLGILGFLTERNANRF 223
DE + + + ++G R+
Sbjct: 135 -------LYSAGEPESLRGPQHSHAWCDEIAKWDNGSNRAMATWDNLLMGLRLGRDPRLV 187
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV-EGIDPSFHEGIIARYGLDSDVTRV 282
T P DD + T + + F E + +G + + R
Sbjct: 188 ATTTPRPV----PLVARIMDEGDDVVVTRGSTFENQDNLPRRFVEAMRRTFG-GTTLGRQ 242
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD-IAEEGGDNTVVVL----- 336
E+ G+ + + + +IE A RE +++G D A GD +++
Sbjct: 243 ELLGEMIEDLVGALWSRALIENA--REDAAPAMTRVVVGVDPPASAHGDACGIIVCGIGD 300
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
R + + ++ + D ++ +AN G L +
Sbjct: 301 DRIARVLADCSVEQASPERWARAVANAARAWSADRVVAEANQGGEMVAAVLRAAEASLPL 360
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADW--LEFASLINHSGLIQNLKSL-KSFIVPNTGEL 453
L R E + + + A + L L L G
Sbjct: 361 RLVHASRGKAA-----RAEPVAALYEAGRVRHAGMFP--QLEDELCGLMPGGEYQGPGR- 412
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAE 478
S D +D ++ E
Sbjct: 413 -----------SPDRADACVWALTE 426
>gi|260556808|ref|ZP_05829026.1| P-loop protein [Acinetobacter baumannii ATCC 19606]
gi|260410067|gb|EEX03367.1| P-loop protein [Acinetobacter baumannii ATCC 19606]
Length = 437
Score = 71.5 bits (173), Expect = 4e-10, Method: Composition-based stats.
Identities = 61/430 (14%), Positives = 106/430 (24%), Gaps = 65/430 (15%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISV------ICLANSETQLKTTLWAEVSKWLSLLPNK 138
GR GKT L + +V A + Q K W + + +
Sbjct: 37 GRRFGKTFLAKAEMRRAARLAQKWNVSVEDEIWYAAPTFKQAKRVFWKRLKQAIPPSWRF 96
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
++ D + + +I D
Sbjct: 97 GKPNETECTITLK--------------------TGHVIRVVGLDNYDDLRGSGLFFLIID 136
Query: 199 EASGTP-DVINLGILGFLTE----------RNANRFWIMTSNPRRL-SGKFYEIFNKPLD 246
E + + L+ N I T + + N
Sbjct: 137 EWADCKWAAWEEVLRPMLSTCKYTVNGVQRVGGNVLRIGTPKGYNHCYDTWMDGQNGREP 196
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
D K + + I S + + D R E F I
Sbjct: 197 DHKSWIYTSLQGGNIPESEIDVARRKM--DPKTFRQEYEASFETYQG--VIYYCFERTFN 252
Query: 307 NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
E L +G D VV +R G + + ++ DL T I + K
Sbjct: 253 CTEKVVKEGDVLHIGMDF-NVQKMAAVVYVRDGEELYAVGEF--KDLFDTPAMIEAIKAK 309
Query: 367 YRPDAIII--DANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
Y+ II+ DA+ ++ L+ G+ V D N R L
Sbjct: 310 YQDHEIIVYPDASGDNRKSSNASETDIALLKKAGFKVQVNSRNPAVKDRINSMNSR--LC 367
Query: 418 VKMADWLEFASLINHSGLIQNLK-SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
M + L + SL+ I + G+ + G + + +
Sbjct: 368 NTMGER----RLYVNLKQCPEFARSLERQIYDDHGQ----PDKKAGFDHLNDAGTYPVAY 419
Query: 477 AENPPRSDMD 486
+ +
Sbjct: 420 MFPLNKKTVG 429
>gi|126739361|ref|ZP_01755054.1| terminase, large subunit, putative [Roseobacter sp. SK209-2-6]
gi|126719461|gb|EBA16170.1| terminase, large subunit, putative [Roseobacter sp. SK209-2-6]
Length = 433
Score = 71.1 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 58/429 (13%), Positives = 110/429 (25%), Gaps = 67/429 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V +ST P + + + Q++ + S L+
Sbjct: 41 ILGGRGAGKTRAGAEWVRCQIEGATPLSTGPSRRLALVGETYDQVRDVMIQGDSGILACS 100
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P + ++
Sbjct: 101 PKDRRPQWKAGERKLL------------------WANGAQAQAFSAHDPEALRGPQFDLA 142
Query: 196 INDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + L R I T+ + + +
Sbjct: 143 WLDELAKWKRGREAWDMLQFALRLGKDPRACITTTP---RNSQILRDVLAQSSTVQTHAP 199
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ PSF E + RY + + R E+ G + E A +
Sbjct: 200 TDANRANLAPSFLEEMKQRYA-GTRLGRQELEGCLLSDVEGALWSSA--ELAGQQCKEAP 256
Query: 314 PYAPLIMGCDIA---EEGGDNTVVVL---RRGPVIEHLFDWSKTDLRT-------TNNKI 360
+++ D A + D +++ R + D +
Sbjct: 257 ELDRIVVAVDPAVSAGKASDACGILVAGARHAGTPSEWETYVLADRTVQGEGPLSWAKAV 316
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
E++ +I + N GA + L + +V + R E +
Sbjct: 317 IAAKEEFGACRVIAEVNQGGALVENLLRQVDPNV-PFTAHHASKGKT----ARAEPVAAL 371
Query: 421 ADWLEFASLINHSGL--IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + + GL +++ + G L G S D D L++ E
Sbjct: 372 YE---QGRVFHLRGLGALEDQMCQ----MTPQGFL--------GQGSPDRLDALVWAIHE 416
Query: 479 NPPRSDMDF 487
R +
Sbjct: 417 LILRPTSSY 425
>gi|148257070|ref|YP_001241655.1| putative phage terminase large subunit [Bradyrhizobium sp. BTAi1]
gi|146409243|gb|ABQ37749.1| putative phage Terminase large subunit [Bradyrhizobium sp. BTAi1]
Length = 428
Score = 71.1 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 46/355 (12%), Positives = 92/355 (25%), Gaps = 37/355 (10%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ L++ G +C+ ++ L + +
Sbjct: 26 GGRGSGKSHFFGELLVETCQAERGTLAVCIREAQRTL------------AQSSKRLIEGK 73
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + D + ++ E + G DEA
Sbjct: 74 IAALGLGQGFRPFSDRIATPGDGLIIFRGMQDHTAESIKSLEGFR-----IAWIDEAQTL 128
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI-FNKPLDDWKRFQIDTRTVEGID 262
+ + + + + NPRR S + ++ D + + R +
Sbjct: 129 SVRSLSLLRPTIRAPRSELW--ASWNPRRKSDAVDDFLRSRKPDGAVVVKANWRDNPWLP 186
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI--- 319
E L D G + + ++ + + PL+
Sbjct: 187 AVLDEERRLDLALYPDRYEHIWEGDYVRAFEGAYFADLLAQARREGRIGKVAADPLLPLR 246
Query: 320 --MGCDIAEEGGDNTVVVL--RRGPVIEHLFDWSKT------DLRTTNNKISGLVEKYRP 369
+ A D + + G + L + + + Y P
Sbjct: 247 AFIDIGGAGASADAFTIWIVQWVGNEVRVLDYYEAVGQVLAFHVNWLRARGYQNAILYLP 306
Query: 370 DAIIIDANNTGARTCDYLEMLGYHV-YRVLGQKRAVDLEFCRNRRT---ELHVKM 420
+ TG R D+L G+ V V Q R + R +L
Sbjct: 307 HDGLATNAVTGKRYADHLREAGFAVEPPVKNQGRGAAMMRVEALRRLGPQLWFNA 361
>gi|78043214|ref|YP_360500.1| prophage LambdaCh01, PBSX family terminase large subunit
[Carboxydothermus hydrogenoformans Z-2901]
gi|77995329|gb|ABB14228.1| prophage LambdaCh01, terminase, large subunit, PBSX family
[Carboxydothermus hydrogenoformans Z-2901]
Length = 420
Score = 71.1 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/330 (12%), Positives = 94/330 (28%), Gaps = 24/330 (7%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK++ + ++ M P + + L + LK +++ ++ + L
Sbjct: 32 KGGRGSGKSSFASIEIILGMMKDPNANAVVLRKVKETLKDSVFEQLIWAIEKLKVSD--- 88
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
W + + R + + Y I +E
Sbjct: 89 ---------YWDIKHNPMEMTYIPTGQKILFRGADKPKKIRSTKVSKGYIKFIWYEEVDE 139
Query: 203 TP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE- 259
+ I + + + + P R++ E D K TV
Sbjct: 140 FNGMEEIRIINQSLMRGGEQFVVFYTYNPPNRVNAWVNEEILIERPDRKVHHSTYLTVPR 199
Query: 260 -GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ F ++ R E G+ + F + I + + +
Sbjct: 200 EWLGEQFLIEAEHLKRINERAYRHEYLGEITGTGGEIF---SNITIRKITDDEIKAFDRI 256
Query: 319 IMGCDIAEEGG---DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
G D R + ++ + L +++ L+++ I
Sbjct: 257 RRGIDWGYAVDPVHYTVCHYDRTRRRLFIFYEIHQVGLSN--RRLAELIKEENKLNSPIT 314
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
A++ ++ L+ G VY +V+
Sbjct: 315 ADSAEPKSIAELKSYGLKVYGAKKGPGSVE 344
>gi|298290710|ref|YP_003692649.1| hypothetical protein Snov_0699 [Starkeya novella DSM 506]
gi|296927221|gb|ADH88030.1| protein of unknown function DUF264 [Starkeya novella DSM 506]
Length = 428
Score = 71.1 bits (172), Expect = 5e-10, Method: Composition-based stats.
Identities = 58/411 (14%), Positives = 105/411 (25%), Gaps = 59/411 (14%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTR---PGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ GRG GKT A V L R P + +A S L+ + VS L++ P
Sbjct: 42 VLGGRGAGKTRAGAEWVRALAFGRAGPPAGRIALVAESLGDLREVMVEGVSGLLAVHPRG 101
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ D A D
Sbjct: 102 ERPTWEPTRKRLE------------------WPNGAVAQGFSADDPESLRGPQFDAAWCD 143
Query: 199 EASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
E + + L R + T+ + +
Sbjct: 144 ELAKWRYAQAAFDNLQFGLRLGARPRQMVTTTPRPTTLLRALLADPRT---AVTRMGTAE 200
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDP 314
+ P F E ++ RY + + R E+ G+ + D+ +IE
Sbjct: 201 NAAHLAPHFLETVVGRYA-GTRLGRQELDGELIEDRPDALWSRALIEAGREAAAPEMVRQ 259
Query: 315 YAPLIMGCDI---AEEGGDNTVVVL----RRG-PVIEHLFDWSKTDLRTTNNKISGLVEK 366
+++ D + + D +V R G + + GL +
Sbjct: 260 MERIVVAVDPPASSRKHADACGLVAAGIDRDGLVHVLADESAQGLTPTGWGGRAVGLFHR 319
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WL 424
D ++++ N G L + V ++ R E + + +
Sbjct: 320 LEADRVVVEVNQGGEMVKSILAGIDPSV---PVREVRATRGKW--LRAEPVAALYEQGRV 374
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
A L L + G +S D D L++
Sbjct: 375 RHAGAFP--ALEDELC-----DFGSDGL--------SNGRSPDRLDALVWA 410
>gi|315575102|gb|EFU87293.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
gi|315582529|gb|EFU94720.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
Length = 407
Score = 70.7 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/380 (11%), Positives = 106/380 (27%), Gaps = 46/380 (12%)
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ + E S G S ++ + +
Sbjct: 23 VDESIARKLLEPVDKLERLQTGLSKRKISFSGGGSIEGISLGEHFKGNKSGNQAIGRGGD 82
Query: 192 GMAIINDEASGTPDVINLGI--LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
I DE++ + + F N SNP G+FY+ +
Sbjct: 83 ---YIIDESAFVSNETYAELGRRNFANVDGKNYLSFEISNPHNK-GRFYDKLTQENIPKG 138
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE------VCGQFPQQDIDSFIPLNIIE 303
+ + + I S+ + + + P ++ D E
Sbjct: 139 MLVVWADVRTAFEEDRVKSIEQVIS--SEFFQNKSTCQRYFLCELPDENEDGMFGTPQTE 196
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDN-----TVVVLRRGPVIEHLFDWSKTDLRTTNN 358
E + +G D A +G D + + + + + K D +
Sbjct: 197 -----EEHTEKNWEYFLGVDSAYKGKDKIKATLSALDAQGQVHVIDTIEIEKGDWQDGVT 251
Query: 359 KIS-----GLVEKYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKR----AVDLE 407
++ ++ + G + L + + ++ + V+
Sbjct: 252 SKKIITQLLMIIEHFEVKGVCVDVGYGVYIVEGLAHINGDFELHGINFGAGTTKERVEKN 311
Query: 408 FC-----RNRRTELHVKMADWLEFASLINHSGLIQN---LKSLKSFIVPNTGELAIESK- 458
N+R E+H+ + + ++ ++ + + L S + + G+ AI K
Sbjct: 312 HYSAKYGANKRAEMHIDLQENIDNRNIFFTEKVYEEVIDELVLVSSKIKSNGKTAIVPKE 371
Query: 459 --RVKGAKSTDYSDGLMYTF 476
+ K S D D ++ +
Sbjct: 372 EIKAKLGHSPDTLDSVLLSL 391
>gi|300022629|ref|YP_003755240.1| hypothetical protein Hden_1105 [Hyphomicrobium denitrificans ATCC
51888]
gi|299524450|gb|ADJ22919.1| protein of unknown function DUF264 [Hyphomicrobium denitrificans
ATCC 51888]
Length = 500
Score = 70.7 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 57/404 (14%), Positives = 107/404 (26%), Gaps = 36/404 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMS-TRPGISVICLA-NSETQLKTTLWAEVSKWLSLLPNKHWF 141
GRG GKT A + L PG + N+ + T ++ L +
Sbjct: 104 GGRGSGKTRAGAEWIRGLACGEEPGPRSAAGSRNASRRAPTKESPRIALVGKTLADVRNV 163
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
++ S A + + D A DE +
Sbjct: 164 MIEGQSGLLAVHPARERPVFEPSKRRLIWPNGAVAELFSADEAEALRGPQFTAAWCDELA 223
Query: 202 GTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
+ + L +A R + T+ + K +
Sbjct: 224 KWRNAEKAWDMLQFALRLGDAPRACVTTTP---RATKLLKSIIADEATVTVNLATADNAL 280
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ P+F + RY S + R E+ G+ + D + IEEA R ++
Sbjct: 281 NLAPTFLAEMTRRYA-GSAIGRQELLGEIVEDASDGLWRRHWIEEA--RVDAAPEMQRVV 337
Query: 320 MGCDI---AEEGGDNTVVVL-----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
+ D A D +V+ + + + Y D
Sbjct: 338 VAVDPPVTATAASDACGIVVAGLGVDKRAYVLADRTVQGRTPEIWARAALSAFDDYEADR 397
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN 431
++ + N G L+ + V + L+ + L
Sbjct: 398 MVAEVNQGGDLVVSVLQQFRQNFPVVKVRATRGKWVR-AEPVAALYAEGRVA-HVGRL-- 453
Query: 432 HSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
L + + + G + +S D SD L++
Sbjct: 454 -DALEDQMCT-----FGSDGTVK--------GRSPDRSDALVWA 483
>gi|149185407|ref|ZP_01863723.1| hypothetical protein ED21_20319 [Erythrobacter sp. SD-21]
gi|148830627|gb|EDL49062.1| hypothetical protein ED21_20319 [Erythrobacter sp. SD-21]
Length = 444
Score = 70.7 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 63/453 (13%), Positives = 117/453 (25%), Gaps = 60/453 (13%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
K T E P W+ + S P + + AGRG GKT A VL
Sbjct: 24 RKLTAEERAEWPYHWRRQA--------RESQRAPEGDWQTWLVMAGRGFGKTRAGAEWVL 75
Query: 100 WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
P + + S +++ + S L+ P + Q
Sbjct: 76 ETAEADPFARIALVGASLGEVRAVMVEGESGILACSPPWRAPDYQP-------------- 121
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI------NLGILG 213
+ DE + + +L
Sbjct: 122 ----SLRTVHFPNGAQAFLYSAAESESLRGPQHSHAWCDEVAKWSNSHERASRSWDNLLL 177
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY 273
L R T+ + + + F + A +
Sbjct: 178 GLRLGKDQRIMATTTPRSVPLLRRLLDAERTHGLVLTGGATRDNAANLPTKFLAAMDAEF 237
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD-IAEEGGDNT 332
G +S + E+ G ++ + ++E+ D +++G D A GD
Sbjct: 238 G-NSALGLQELDGLLLEEIEGALWSRALLEQRRGA-CAEDDLRRVVVGVDPPASAHGDEC 295
Query: 333 VVVL-----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
+V+ ++ + + D ++ +AN G L
Sbjct: 296 GIVVCGQDETGSGIVLADCSIGPASPEQWARAAAEAASAWNADRVVAEANQGGQMVGSVL 355
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW--LEFASLINHSGLIQNLKSLKSF 445
+ L R R E + + + A + + L L L
Sbjct: 356 RAADVSLPLKLVHARRGKAA-----RAEPVAALYEAGRVRHAGMF--AKLEDQLCGL--- 405
Query: 446 IVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ G E +S D +D L++ E
Sbjct: 406 -MAGGG---YEG----PGRSPDRADALVWALTE 430
>gi|21280309|dbj|BAB96804.1| gp17v [Bacteriophage KVP20]
Length = 600
Score = 70.7 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 57/451 (12%), Positives = 114/451 (25%), Gaps = 65/451 (14%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ + F ++ PR +Q E + + +F
Sbjct: 98 KCRDDIVYFAENYCS-IVHIDLGNIKMVPRPYQKEML--------EVADRSRFSIFLL-- 146
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R +GKTT+ + + LA+ + L V + LP+
Sbjct: 147 --PRQLGKTTIMGIFLAHYLVFNEDKEAGILAHKGSMSMEVLER-VKNVIENLPD----- 198
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
P + ++ D+ I DE +
Sbjct: 199 ------FLQPGIEEWNKGNITFDNGCKLGAY-------ASGSDAVRGKSFSMIYVDECAF 245
Query: 203 TP--DVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
P D + + + T N + + ++ + R V+
Sbjct: 246 VPGFDDFWKATFPVISSGEESKVVLTSTPNGLNHYHDMWNAAVAGVSTFEPYTTTWRAVQ 305
Query: 260 G-------IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE--- 309
D + E F + I + + ++
Sbjct: 306 NRLYKDGEFDDGEAFKSETIGNTSREAFSQEHLCNFL-GTAGTLINGFKLSKMKGQDIVK 364
Query: 310 --------PCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVI----EHLFDWSKTDLRTT 356
P+ I+ D +E G D + + +F +KT
Sbjct: 365 DHDGWYVYKQPEENHKYILTVDTSEGRGQDYHALHMIDVTSYPFEQVAVFHDNKTSHLLL 424
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYL-EMLGYH--VYRVLGQKRAVDLEFCRNRR 413
I +Y + + +TG + L L Y + L N++
Sbjct: 425 PAIIMKQAYRYNEAYVYCEIASTGELVMNELFRDLEYENVIMEERASGGRRGLGLKPNKK 484
Query: 414 TEL--HVKMADWLEFASL-INHSGLIQNLKS 441
T+ + D +E L INH ++ +
Sbjct: 485 TKAIGCSTLKDLIEKDQLKINHIPTLKEFHT 515
>gi|198242430|ref|YP_002214959.1| hypothetical protein SeD_A1100 [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|193876434|gb|ACF24836.1| ORF11 [Salmonella enterica subsp. enterica serovar Dublin]
gi|197936946|gb|ACH74279.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|326622711|gb|EGE29056.1| hypothetical protein SD3246_1075 [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 423
Score = 70.7 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 58/364 (15%), Positives = 96/364 (26%), Gaps = 52/364 (14%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+E + H +P K I AGR GKTT+ + + + V A S
Sbjct: 6 VIEFLPFHAGQKKIYRSPAKRKV-IRAGRRFGKTTMLEQAGGNWAARQ--MRVGWFAPSY 62
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
L LL + S DS
Sbjct: 63 ----KILLPSFKTIRDLLKP-------------------ITISSSKTDSIIELIGGGLVE 99
Query: 178 EERPDTFVGHHNTYGMAIINDEAS----GTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
D + +I DE S G D+ I L + + + T
Sbjct: 100 FWTLDNPDAGRSRKYHKVIIDEGSLVKKGMRDIWEQAIEPTLLDFDGDAVMAGTPKGVDD 159
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
FY+ N W+ T I+P+ II G V + E +F
Sbjct: 160 ENFFYQACNDKSMGWEEHHAPTAANPTINPAALARIID--GRPPLVVQQEYNAEFVDWRG 217
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAE----EGGDNTVVVLRRGPVIEHLFDWS 349
+F L+ + E P + D A+ + + + +
Sbjct: 218 QNFFKLDWLLENGAPVDYPFSCDTVYGVVDCAQKGKLQNDGSACIWFALDNLPSPHLIIL 277
Query: 350 KTDLRTT---------------NNKISGLVE-KYRPDAIIIDANNTGARTCDYLEMLGYH 393
D+ +S + + + I+ TG G++
Sbjct: 278 DWDIIQIDGYFLKDVVPQWEGKAKHLSEICRARMGTTGLFIEDKATGITLLQQDANEGWN 337
Query: 394 VYRV 397
V+ V
Sbjct: 338 VHPV 341
>gi|254465926|ref|ZP_05079337.1| phage DNA Packaging Protein [Rhodobacterales bacterium Y4I]
gi|206686834|gb|EDZ47316.1| phage DNA Packaging Protein [Rhodobacterales bacterium Y4I]
Length = 428
Score = 70.3 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 54/433 (12%), Positives = 109/433 (25%), Gaps = 59/433 (13%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL---VLWLMSTRPGI---SVICLANSET 118
L+ P+ + I GRG GKT A + + +A +
Sbjct: 19 WALDHQRPPDGDWRAWVILGGRGAGKTRAGAEWVRSLAEGARPHDPGTARRIALVAETYD 78
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
Q++ + S L+ P + ++
Sbjct: 79 QVRDVMIHGDSGILACSPPDRRPKWKASERKL------------------IWPNGAEAQA 120
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
A DE + + L R + T+ +
Sbjct: 121 FSAHDPEALRGPQFDAAWADELAKWRKGQESWDMLQFALRLGQDPRVCVTTTP---RNAP 177
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + + PSF E + +RY + + R E+ G +
Sbjct: 178 VLKRLLASPSTVQTHAATEANRANLAPSFLEEVRSRYA-GTRLGRQELDGVMLSDIQGAL 236
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV-----------IEHL 345
+ EA E P + + ++ + ++ G V +
Sbjct: 237 WTTAALVEAQVAEAPPLDRVVVAVDPAVSAGKDSDACGIVVAGAVTRGKPQDWQAYVLAD 296
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+ +++ + ++ + N GA L V RA+
Sbjct: 297 CTVQGVGPLAWAQAVIAARDRFGAERVVAEVNQGGALVESVLRQADPLVPF-----RALH 351
Query: 406 LEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
++ R E + + L L + + G +G S
Sbjct: 352 ARKGKSARAEPVAALYEQGRVRHLPGLGELEDQMCQ-----MTPQGY--------RGGGS 398
Query: 466 TDYSDGLMYTFAE 478
D D L++ E
Sbjct: 399 PDRVDALVWALHE 411
>gi|159897093|ref|YP_001543340.1| hypothetical protein Haur_0564 [Herpetosiphon aurantiacus ATCC
23779]
gi|159890132|gb|ABX03212.1| hypothetical protein Haur_0564 [Herpetosiphon aurantiacus ATCC
23779]
Length = 477
Score = 70.3 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 55/440 (12%), Positives = 116/440 (26%), Gaps = 76/440 (17%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R +G + L LWL +PG V+ + + + L V + LP+
Sbjct: 63 ARQLGISWLCCAYALWLCLFQPGKVVLIFSKGQGEADEMLHR-VKRLYERLPDWMREASP 121
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH-HNTYGMAIINDEASG- 202
+ L D+ + G + +I DEA
Sbjct: 122 A----------------LVTDNTTELEWANGSRVKSLPATKGAGRSFTASLVILDEAGFL 165
Query: 203 -TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
+ + + + L + + + +K +
Sbjct: 166 IWAKQLYTALKPTIDGGGQLIVLSTANGIGNLFHQLWVKALSAKNRFKTIFLPWWARPTR 225
Query: 262 DPSFHEGIIARYGLDSDVTRVEV---------------------------CGQFPQQDID 294
D +++ + Y D D+ R E G + D
Sbjct: 226 DAQWYQEQLEEY-TDLDMVRQEYPSTAQEAFLVSGRTRFKMPWLLQQTPSDGLAAESLPD 284
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIA---EEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ L+ + P I+ D+A E G ++ E + K
Sbjct: 285 ALDKLDGVTM----YQLPQQGRRYILAADVAEGLEHGDFCAATLIDAVSWEEMVSVHGKW 340
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
+ + L + Y + ++ NN G +++ G+ V G
Sbjct: 341 EPDEYARILMALSDGYG-ATVAVERNNHGHAVLTTMKLAGFT-RIVYGLDGRAGWLTNAQ 398
Query: 412 RRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKST----D 467
+ ++ +A L + + N ++ + + G G + D
Sbjct: 399 TKPQMIDLLATALRDVLVKIRNQTALNELAI--YRILKNG----------GTGAPAGYHD 446
Query: 468 ---YSDGLMYTFAENPPRSD 484
+ + A P +
Sbjct: 447 DFVMAWAIALMVASQPTEVE 466
>gi|16127022|ref|NP_421586.1| hypothetical protein CC_2790 [Caulobacter crescentus CB15]
gi|221235816|ref|YP_002518253.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
gi|13424390|gb|AAK24754.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220964989|gb|ACL96345.1| phage DNA packaging protein [Caulobacter crescentus NA1000]
Length = 567
Score = 70.3 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 51/439 (11%), Positives = 108/439 (24%), Gaps = 62/439 (14%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P Q + ++ + +P + GRG GKT A + W P
Sbjct: 166 PEDQQRLLSAALAEPLIHQLASPFSPWSTWLMLGGRGAGKTFAGARWITWNALAYPSQ-- 223
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ + ++ + S ++ + ++
Sbjct: 224 ALIGPTLHDVREVMIEGPSGLKAMGGPAYRPRWEASRRRL------------------VW 265
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL---GFLTERNANRFWIMT 227
+ A DE P + G + T
Sbjct: 266 PNGAVAYAFSAEDPESLRGPQFHAAWADEFCAWPKPAETLAMLRFGLRLGEDPRLVVTTT 325
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
P R + + + P+F + + YG + + E+ G
Sbjct: 326 PKPHRA----LKTLMAEPGVALTRAGTSANAGNLAPAFLRTLASLYG-GTRLAAQELDGV 380
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV-----I 342
+ D F ++ R D +++ D + ++ G +
Sbjct: 381 VVETDGGLFRAEDLARCRAARPARLD---RVVVAVDPPATATGDACGIVVVGRRDDRAFV 437
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR 402
+ + DA++ +AN G L L +
Sbjct: 438 LADETARGLSPAGWAGRAVAAARAWTADALVAEANQGGDMVRSVLAQADPPCRVKLVRAS 497
Query: 403 AVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKR 459
R E + + +++ L + L +L +G
Sbjct: 498 LGKRA-----RAEPVAALYE---QGRVLHCGAFVALEEELMAL------GSG-------- 535
Query: 460 VKGAKSTDYSDGLMYTFAE 478
S D +D L++ +E
Sbjct: 536 -DLEHSPDRADALVWAVSE 553
>gi|294668772|ref|ZP_06733865.1| terminase, ATPase subunit [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291309289|gb|EFE50532.1| terminase, ATPase subunit [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 158
Score = 69.9 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 13/146 (8%)
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I D ++ L+ +Y +++D G + V V
Sbjct: 9 DKFRILEHKLLRGDDFERQAEEVRSLLGRYNVQKVVVDRTGLGEAVFQLVGKFFPRVIGV 68
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELA 454
++ + KM L + S + ++++F G ++
Sbjct: 69 NYSLAE---------KSLMVNKMLSLLRANRVEWDSDCKDITAAFLNIRTF-TTAGGRVS 118
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENP 480
ES R + + +D + M F + P
Sbjct: 119 YESARTEASSHSDVAWAAMQVFYQEP 144
>gi|62362371|ref|YP_224236.1| putative terminase large subunit [Listonella phage phiHSIC]
gi|58219993|gb|AAW67505.1| putative terminase large subunit [Listonella phage phiHSIC]
Length = 408
Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 41/378 (10%), Positives = 98/378 (25%), Gaps = 43/378 (11%)
Query: 84 AGRGIGKTT-LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
RG GK+ +W + ++C + +K + AE+ +
Sbjct: 30 GSRGSGKSFNFAKMAAIWGAI--EKMRILCTRELQVSIKESFHAELKNAIK--------- 78
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
S + + + + + + + + I +EA
Sbjct: 79 --SDEWLSSIYDVGIDYIRNNNNGTEFLFKGLRHGMGSVKSTAQI-----DLTIVEEAED 131
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL-DDWKRFQIDTRTVEGI 261
P+ + +L + + W+ NPR+ + F + DD +++
Sbjct: 132 VPENAWVELLPTIFRTDKAECWV-IWNPRKKGSPVDKRFRQFKPDDAVVVEMNYYDNPFF 190
Query: 262 DPSFHEGIIARYG-LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
+ + ++ G + + +E+ P
Sbjct: 191 PKGLEDLRRHDEDTMPPELYAHVWLGAYYEHTEAQVFKNWKVEQVNTNGWE----GPYY- 245
Query: 321 GCDIAEEGGDNTVVVLR-RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
G D V G + + K L + + D + A++
Sbjct: 246 GLDFGFSQDPTAGVKCWLNGNDVYIEKEAGKVGLEIDHTADYLIKRIDGIDDAKVYADSA 305
Query: 380 GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLI 436
+ L+ G + + + + +WL + + I
Sbjct: 306 RPESISLLKRTGIPRIEGVPKWKGSVEDGV------------EWLRSKRIFIDPECTETI 353
Query: 437 QNLKSLKSFIVPNTGELA 454
+ TGE+
Sbjct: 354 KEFTYYSYKTDRYTGEIK 371
>gi|294085818|ref|YP_003552578.1| hypothetical protein SAR116_2251 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665393|gb|ADE40494.1| protein of unknown function DUF264 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 454
Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 55/341 (16%), Positives = 96/341 (28%), Gaps = 29/341 (8%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ P + + AGRG GKT A + WL + + + +
Sbjct: 56 LLYEWQLWARPKQLPPAGDWRVWLLMAGRGFGKTRAGAEWIRWLAQSGRARRIALVGETF 115
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
+ + S LS+ PN ++
Sbjct: 116 DDARQVMVEGASGILSVCPNWARPAWRAGQRTL------------------IWPSGTIAR 157
Query: 178 EERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
D DE + P + +L ++ T P R
Sbjct: 158 CYSADDPEQLRGPEFDYGWADEIAKWRYPSAWDNLMLALRIGKSPQCIATTTPRPVR--- 214
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+ D + P+F + R+G DS + R E+ G D+
Sbjct: 215 -WLADLAAAEDTVLVQGASRENAANLSPAFMAAMHRRFG-DSYLARQELEGIMMSNLPDA 272
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR----RGPVIEHLFDWSKT 351
N I P + +++G D A GGD T ++ G + D
Sbjct: 273 LWCRNDILRLHRPMPKRHRFIRIVIGVDPAMGGGDETGIITAGKDQDGHIWILADDSLHA 332
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
+I + ++R D++I + N G+ L G
Sbjct: 333 TPDRWAVQIQRVFRQWRADSVIAEINQGGSLIRTLLAQAGC 373
>gi|218781804|ref|YP_002433122.1| hypothetical protein Dalk_3968 [Desulfatibacillum alkenivorans
AK-01]
gi|218763188|gb|ACL05654.1| protein of unknown function DUF264 [Desulfatibacillum alkenivorans
AK-01]
Length = 443
Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 88/344 (25%), Gaps = 42/344 (12%)
Query: 67 LNSVNNPNPEVFKGAISAGRG-IGKTTLNAWLVLWLMSTRP--GISVICLANSETQLKTT 123
+ + ++ GKT ++ P +A Q K+
Sbjct: 25 RRHQWEIHQNKKRFSVLVCHRRFGKTVAAVNELIMKACQNPLPAPRYAYIAPLYKQAKSV 84
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
+W + K+ + +++ ++ L C L ++ + D
Sbjct: 85 VWDYLKKF-------------AGAINGTTFHETELRCDLPNGAR--------ITLLGADN 123
Query: 184 FVGHHNTYGMAIINDEASGTPDVIN-LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
Y + DE + P+ + I L++R +I T Y+
Sbjct: 124 PDRLRGIYLDGAVLDEMAQMPERVWGEIIRPALSDRLGWAMFIGTPRGHNAFYDLYQFA- 182
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ DW + + + E F + ++ I
Sbjct: 183 RSDPDWFCAMYRASETGIVGRDELDAAKKEM--TPEQYEQEFECSFSAAIVGAYYGPLIA 240
Query: 303 EEALNREP---CPDPYAPLIMGCDIAEEGGDNTVVVLRRGP-----VIEHLFDWSKTDLR 354
+ + P+ D+ D+T V + + + + L
Sbjct: 241 QAEKEGRIVTLPVERALPVHTAWDLGMS--DSTAVWFFQVSPGGEIRVVDYLEDAGQGLD 298
Query: 355 TTNNKISG----LVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
+ P I + TG + + LG
Sbjct: 299 YYVRALRERDYLYGTHLAPHDIRVRELGTGKSRLESAKSLGVSF 342
>gi|254471818|ref|ZP_05085219.1| phage DNA Packaging Protein [Pseudovibrio sp. JE062]
gi|211959020|gb|EEA94219.1| phage DNA Packaging Protein [Pseudovibrio sp. JE062]
Length = 428
Score = 69.9 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 50/441 (11%), Positives = 107/441 (24%), Gaps = 73/441 (16%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL-------WLMSTRP 106
WQ+ + GRG GKT V W P
Sbjct: 25 WQVFAHAH-----QRPPEGHWATWL---LMGGRGAGKTRAGVEWVRGKTAGEPWAG--PP 74
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
++ + + ++ + +S L++ P + W + +
Sbjct: 75 AGNIALVGQTYADVREVMIEGISGLLAVHPPNQKPQWNPSRRRL-EWPNGAI-------- 125
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFW 224
+ A DEA + + L +
Sbjct: 126 ---------ARAFSSEDPEALRGPQFDAAWCDEAGKWSNATETFDMLQFGLRLGTQPQQL 176
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ T+ S ++ + + +F + + RYG + + R E+
Sbjct: 177 VTTTP---KSTPLLKMLLQDQRVVVTKAGTKSNAAFLAEAFLQQMAERYG-GTRLGRQEL 232
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI----AEEGGDNTVVVLRRGP 340
G+ + D+ E R +++ D + ++
Sbjct: 233 DGELIEDREDALFARKWFEMNRVRH--VPELKRIVVAIDPPATSGKSADACGIIAAGITE 290
Query: 341 V----IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ ++ L + D ++ + N G + +E + V
Sbjct: 291 AAELFVLRDRTAQGLRPAAWADQAIRLYHELEADCLLAEVNQGGEMVREVIEGVDASVPV 350
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELA 454
RR E + + + + L L + G
Sbjct: 351 KSVHATRSKR-----RRAEPVALLYEQGRVHHCGVFP--ELEDELA-----DFGSGGL-- 396
Query: 455 IESKRVKGAKSTDYSDGLMYT 475
KS D D L++
Sbjct: 397 ------SNGKSPDRLDALVWA 411
>gi|291296347|ref|YP_003507745.1| hypothetical protein Mrub_1969 [Meiothermus ruber DSM 1279]
gi|290471306|gb|ADD28725.1| protein of unknown function DUF264 [Meiothermus ruber DSM 1279]
Length = 426
Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/394 (13%), Positives = 111/394 (28%), Gaps = 34/394 (8%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GK+ + + G I L+ E Q +
Sbjct: 28 SRQTGKSFAASLEAVLDCLEHRGQLWIFLSRGERQS--------LELAEKAKRHCEAIRA 79
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-EASGT 203
LH + + + P G ++++
Sbjct: 80 VAELHQEQFDVATKQYVIQFPNGSRIIS-------LPANPDTARGYSGSVLLDEFGFHQD 132
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD-WKRFQIDTRTVEGID 262
I I +T RN + S P SGKF+E++ D W R ++D
Sbjct: 133 SREIWGAIYPTIT-RNERYRIRVISTPNGQSGKFWELWQGGPGDVWSRHRVDIYDAVKEG 191
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA----LNREPCPDPYAPL 318
+ ++ + D + E +F +++ P +++ + + L
Sbjct: 192 LAIDPEVLRQGIRDPLKWQQEYLLEFVEENTAWL-PYDLLATCESELARTDGELEREGEL 250
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP-DAIIIDAN 377
+G DI + + + V+ + + + + + L IDA
Sbjct: 251 YLGMDIGRQRDLSVIWVIEQVGDVLWTRRVIWLERTPFSAQREVLYGLLPQVRRAAIDAT 310
Query: 378 NTGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLI 436
G + + G V VL + ++ + H +
Sbjct: 311 GLGMQLAEEARQRFGSKVEPVLFTNACKEDLAIT-------LRRRFEDRRIRVPPHERIR 363
Query: 437 QNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD 470
++L +++ I + G +++R D
Sbjct: 364 ESLHAVRR-ITTSAGNFRFDAERDDAG-HADEFW 395
>gi|83950455|ref|ZP_00959188.1| Putative large terminase [Roseovarius nubinhibens ISM]
gi|83838354|gb|EAP77650.1| Putative large terminase [Roseovarius nubinhibens ISM]
Length = 434
Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 51/419 (12%), Positives = 106/419 (25%), Gaps = 63/419 (15%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMS-TRPGI-----SVICLANSETQLKTTLWAEVSKWLSL 134
AI GRG GKT A V + PG + + + Q++ + S L+
Sbjct: 41 AIMGGRGAGKTRAGAEWVRAAVEGATPGAPGRCRRIALVGETVDQVREVMIFGESGILAC 100
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
P E Q+ +
Sbjct: 101 SPPDRRPEWQASRRRL------------------VWPNGAEAAVFSAHDPEALRGPQFDG 142
Query: 195 IINDEASGTPDVI--NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DE + + L + + + T+ R G ++ P Q
Sbjct: 143 AWLDEMAKWKKARATWDMLQFALRLGDDPQICVTTTP--RNVGVLKDVLAAPS--TVVTQ 198
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
T + + + + R E+ G ++ + L ++ A R
Sbjct: 199 APTEANRAHLAESFLAEVRARYVGTRLGRQELDGILLEEAEGALWSLAALDAA--RVSKL 256
Query: 313 DPYAPLIMGCDI---AEEGGDNTVVVLR----------RGPVIEHLFDWSKTDLRTTNNK 359
+ +++ D G D +++ + S
Sbjct: 257 PELSRIVVAVDPPVTGHAGSDECGIIVAGVDQSGPVQEWRAYVLADRSVSGMSPTGWAGA 316
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
+E++ D ++ + N G L + + R E
Sbjct: 317 AIRAMEEFGADKMVAEVNQGGDLVETVLRQIDPLIPFRGVHASRGKQA-----RAEPVAA 371
Query: 420 MADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + + L ++++ + G S D +D L++ E
Sbjct: 372 LYEQGRVHHMAGLDRLEDQMRAMTTRGYEGRG-------------SPDRADALVWALHE 417
>gi|94263678|ref|ZP_01287487.1| hypothetical protein MldDRAFT_1386 [delta proteobacterium MLMS-1]
gi|93455983|gb|EAT06138.1| hypothetical protein MldDRAFT_1386 [delta proteobacterium MLMS-1]
Length = 457
Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 56/408 (13%), Positives = 108/408 (26%), Gaps = 40/408 (9%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ + P V + AGR GKT A + ++L + A + L
Sbjct: 41 ELFTRLAGGRSAPTERVRELWAIAGRRSGKTNATAGIAVYLAT--------IGAAVDGLL 92
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSL-HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
E L ++ ++ + + + D++ R E
Sbjct: 93 DKLAPGERGVVALLAVDRQQAKVALRYIAGMFEASPVLAQMVVKRDAEALHLDNRISIEV 152
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPD--------VINLGILGFLTERNANRFWIMTSNPR 231
+ + +A + DE + D IL L + S+P
Sbjct: 153 STNNYRSVRGRTLLAAVLDEVAFFRDDQSANPDVETYRAILPGLATTGG--LLVGISSPY 210
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
G Y+ + K + +P+ +I D +
Sbjct: 211 AKRGLLYQKWRKHYGQDGDILVIQGATPDFNPTIPTSVITDAEADDPAAARAEWFGLFRD 270
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAP---LIMGCDIAEEGGDNTVVVLRRGP---VIEHL 345
D++ F+ ++E P PY D A G D + + V+
Sbjct: 271 DVEGFLTREVVEACTRPSPLVIPYNRENIYTAFADPAGGGRDEFCLAIGHQEGEVVVVDN 330
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+ + + L++ Y AI D G+ D G
Sbjct: 331 LQARRGAPAKIVAEYADLLKAYNVQAITADRY-AGSWPADEFARHGITCNPA-------- 381
Query: 406 LEFCRNRRTELHVKMADWLEFAS--LINHSGLIQNLKSLKSFIVPNTG 451
N ++ ++ L L+ L +L+
Sbjct: 382 ----ANSKSVFYLDALAAFNSGRLQLPPDDMLLNQLTALERRTARGGR 425
>gi|327198525|ref|YP_004327112.1| phage terminase large subunit [Pseudoalteromonas phage H105/1]
gi|304367920|gb|ADM26679.1| phage terminase large subunit [Pseudoalteromonas phage H105/1]
Length = 414
Score = 69.6 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 57/400 (14%), Positives = 99/400 (24%), Gaps = 47/400 (11%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A G G GKT + +L P S ++ +
Sbjct: 21 AYVGGFGSGKTFVGCMDLLNFFGKHPRTRQGYFGTSYPSIRDIFYPT------------- 67
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
FE +L + + + Y S +RP+T VG + DE
Sbjct: 68 FEEAALMMGFTVDIKESNKEVHVYRNGFYYGTVICRSMDRPNTIVGF---KVSRALVDEI 124
Query: 201 SGTPDVINL------GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
P L +T+ P + + ++P + Q
Sbjct: 125 DTLPKDKATNAWNKIVARLRLKIDGVENGIGVTTTPEGFLFVYSKFKDEPTKSYSMVQAS 184
Query: 255 -TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
E + + + + Y + + G+F S P N
Sbjct: 185 TYENAEFLPDDYIDTLKETYPEG--LIDAYLMGKFVNLTAGSVYP-QYGRNKNNSFESIQ 241
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
P PLI+G D + V R G D + +
Sbjct: 242 PQDPLIVGMDFNVNDMAACIFVERDGIYHCVEELTKGRDTDYMARILKERYLDKGHRVTV 301
Query: 374 I-DANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLE 425
DA+ + D L+ G V R + C NR + + +
Sbjct: 302 YPDASGKNTSSKGADKSDIDILKSYGLWVVAKDSNPRVRERVNCVNRGFQ---DLKIMIN 358
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
+ I+ + + E + G
Sbjct: 359 SMRCPETAKCIEQ----QPYDKNG------EPDKKSGLDH 388
>gi|29366753|ref|NP_813693.1| gp33 [Streptomyces phage phiBT1]
gi|29243073|emb|CAD80101.1| gp33 [Streptomyces phage phiBT1]
Length = 527
Score = 69.6 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 60/477 (12%), Positives = 122/477 (25%), Gaps = 77/477 (16%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG---IS 109
WQ + ++ + + R GK+T+ A ++L+ + G
Sbjct: 54 PWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 113
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
VI AN Q + ++ + ++ P +V + Y
Sbjct: 114 VIAAANDRNQAR-MVFDSAKQMVNASPK-------------LAAVCNVQRDVIRYKDNTY 159
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ ++ + + RN F I+++
Sbjct: 160 RVVSADAGRQQGLNPAAVSLDEYAF-------SKSSDLFDALTLGSAARNQPMFLIISTA 212
Query: 230 PRRLSGKFYEIFNKPL-------DDWKRFQIDT--RTVEGIDPSFHEGIIARYGLD---- 276
G F + + DD F + E +D E
Sbjct: 213 GPDPDGPFAALCEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPEVWARCNPSYDILN 272
Query: 277 ------------SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
R+ QF + A + + +P ++ G D
Sbjct: 273 PDDFKAAAQRSTEASFRIYRLSQFVRGASTWLPHGLWDSLAADDDDPLEPGDEVVCGFDG 332
Query: 325 AEEGGDNTVVVLR-RGPVIEHLFDWSKTDLR--------TTNNKISGLVEKYRPDAIIID 375
+ +G +V R R + L W + ++ YR ++ D
Sbjct: 333 SWKGDSTALVACRVRDLRVFVLGHWEAPADDIHWRVPMADVREALHSALDTYRVRNLVAD 392
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH--S 433
T D LE G+ V A + T+ D L +
Sbjct: 393 PYRW-EETLDNLEAEGFPVEAFPTNSLARMVPA-----TQAVY---DACRDGRLSHDGNP 443
Query: 434 GLIQNLKSLKSFIVPNTGELAIE---SKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
L +++ + + E S+R D + ++ + +
Sbjct: 444 ALARHIGNAVLKEDARGARITKEFGASRRKI-----DLAVAMVLAVWGAVMWREDNG 495
>gi|159184549|ref|NP_353972.2| large terminase phage packaging protein [Agrobacterium tumefaciens
str. C58]
gi|159139855|gb|AAK86757.2| large terminase phage packaging protein [Agrobacterium tumefaciens
str. C58]
Length = 402
Score = 69.6 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/404 (11%), Positives = 100/404 (24%), Gaps = 56/404 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRP--GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
GRG GKT A V + S + + +A + + + +S +
Sbjct: 26 GGRGSGKTRAGAEWVHAVASAGKQSDLRIALVAETLGDAREVMIDGISGICRIARRHRPA 85
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
S P + +DE
Sbjct: 86 FEVSRRRLLWPN-------------------GAMAQVFSSEDPESLRGPQFHLAWSDELG 126
Query: 202 GT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
P + L R + T+ + +
Sbjct: 127 KWKYPQETWDMLQFGLRLGEMPRQLVTTTP---RPIPLLKALLSDPTSRVARMPTAMNAQ 183
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ P F + + RYG + + R E+ G+ + + +E + P +
Sbjct: 184 NLSPGFLKAMQERYG-GTRLGRQEIGGELIDEREGALWKRADLEAIIEAAHEPLSRIVVA 242
Query: 320 MGCDIAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRT-TNNKISGLVEKYRPDAIII 374
+ +V+ G ++ + + + ++ D ++
Sbjct: 243 VDPPAGVGENSCCGIVVAGLGMSGRLVVLADCSVEGETPAGWARAVVAAFRRHEADRVVA 302
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH-- 432
+ N G L+ + ++ L + R E + + + +
Sbjct: 303 EVNQGGEMVRAMLQSIDANLPLTLVRAS---RGKFT--RAEPVAALYE---QGRVRHSGR 354
Query: 433 -SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
L + G + S +S D D L++
Sbjct: 355 FEKLEDQMT-----DFGPDG---LSS-----GRSPDRLDALVWA 385
>gi|114319955|ref|YP_741638.1| hypothetical protein Mlg_0794 [Alkalilimnicola ehrlichii MLHE-1]
gi|114226349|gb|ABI56148.1| hypothetical protein Mlg_0794 [Alkalilimnicola ehrlichii MLHE-1]
Length = 509
Score = 69.6 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 58/412 (14%), Positives = 117/412 (28%), Gaps = 45/412 (10%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ P + + AGR KT A + ++L + A + L
Sbjct: 44 ALFKRLSGDREPPQRQARELWAIAGRRSDKTHTAAGIAVYLAT--------IGAELDGTL 95
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
E L ++ ++ + S V+ + ++ + S E
Sbjct: 96 ARLTAGERGVVQLLAVDRQQAKVALGYVRGLFADSPVMSSLVEKENTEGVLLRNGVSIEV 155
Query: 181 PD-TFVGHHNTYGMAIINDEASGTPD--------VINLGILGFLTERNANRFWIMTSNPR 231
+ +A I DE + D + ++ L + S+P
Sbjct: 156 ATNSHRAVRGRTLLAAILDECAFFKDEATATPDVEVYRALVPSLATTGG--MLVGISSPY 213
Query: 232 RLSGKFYEIFNKPLDDW-KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
G Y + K + T++ I D + + E GQF
Sbjct: 214 ARRGLLYSKWRKHYGKPGDVLVVQGGTLDFNPTLDPRVIAEAEQDDPEAAKAEWHGQFRA 273
Query: 291 QDIDSFIPLNIIEEAL---NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR---GPVIEH 344
F+ ++ E P D + D + + G +
Sbjct: 274 DVEG-FVTREAVDACTAPGRIELPPVAGERYTAFVDPSGGSKDAFTLAIAHQSDGLTVVD 332
Query: 345 LFDWSKT--DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR 402
K + +GL+++Y+ ++ D G R L +K+
Sbjct: 333 AIRAQKPPFSPEAVVKEFAGLLKEYKISKVVGD-------------RYGGEFPRELFRKQ 379
Query: 403 AVDLEFCRNRRTELHVKMADWLEFAS--LINHSGLIQNLKSLKSFIVPNTGE 452
+ + +++L+ M L L ++ L L SL+ G+
Sbjct: 380 GIAYKLSDRPKSDLYRDMLPLLNSGRVELPDNGRLQNELTSLER-RTSRAGK 430
>gi|221633560|ref|YP_002522786.1| hypothetical protein trd_1584 [Thermomicrobium roseum DSM 5159]
gi|221155562|gb|ACM04689.1| conserved hypothetical protein [Thermomicrobium roseum DSM 5159]
Length = 489
Score = 69.6 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 61/417 (14%), Positives = 113/417 (27%), Gaps = 70/417 (16%)
Query: 85 GRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R GK A + WL+ R G V+ S +++ L
Sbjct: 61 SRQSGKDEALAQFLAWLLLRFHRRGGEVVVALPSWRPQ-----GALARERLLAVLAAPRL 115
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
L+ +LG Y++ + + + ++ +EA
Sbjct: 116 AALLAGLGLAPEVAGARVALGRAVVRYASAGPSANVRGLTAS--------LLLVANEAQD 167
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-----NKPLDDWKRFQIDTRT 257
+ + + S E+ + + +++ T
Sbjct: 168 IAPDRWDSAFAPMAASTGAPALYLGTPWGSDSLLARELRYLTALERQDGQQRVWRVPWTT 227
Query: 258 VEGIDP---SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP--CP 312
V P +A+ G R E + + F P + + P
Sbjct: 228 VAAELPAYGDHVRERMAQLGAGHPFVRTEYGLEELAGEGRLFPPERLALVRGDHPALLAP 287
Query: 313 DPYAPLIMGCDIAEEGG--------------DNTVVVLRR-------GPVIEHLFDWSKT 351
P + D+A E D T + + R W
Sbjct: 288 RPGERYALTVDVAGEDEASAGELRDDPGARRDATALTVVRVVPGTLPRYEAVWRARWVGA 347
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCR 410
+ + L +R + +++DA+ GA +LE LG V RV+ R
Sbjct: 348 RQVRQHEALVQLARAWRAERVVVDASGVGAGLAAFLEHALGERVRRVVFSPR-------- 399
Query: 411 NRRTELHVKMADWLEFASLIN---H-----------SGLIQNLKSLKSFIVPNTGEL 453
++EL +E + + L SL+S + P G L
Sbjct: 400 -VKSELGWAFVGLVESGRYRDYAVDAATPGELAALGEAFLAELASLRSVVAPGPGRL 455
>gi|33601198|ref|NP_888758.1| putative phage terminase [Bordetella bronchiseptica RB50]
gi|33602480|ref|NP_890040.1| putative phage terminase [Bordetella bronchiseptica RB50]
gi|33575633|emb|CAE32711.1| putative phage terminase [Bordetella bronchiseptica RB50]
gi|33576919|emb|CAE33999.1| putative phage terminase [Bordetella bronchiseptica RB50]
Length = 425
Score = 69.2 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 56/439 (12%), Positives = 104/439 (23%), Gaps = 42/439 (9%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P F+ + AG G GKT + + P ++ A + Q++
Sbjct: 5 NQPQARFLALPHKFRAFV-AGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIF 63
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + + + +H K + + D
Sbjct: 64 YPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDEL 123
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
+ I G T + + + +
Sbjct: 124 DVMKTDKAALAWRKIIARLRHTAPGLINGV--------DVTTTPEGFKFVYQQFVKQVRE 175
Query: 245 LDD----WKRFQIDTRTV-EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
D + Q T + + + + A Y + + GQF S P
Sbjct: 176 RPDLVALYGLVQASTYENGKNLPEDYIPSLRASY--PPQLIAAYLRGQFTNLTSGSVYP- 232
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
N + + +P+ L +G D TV V+R G + D
Sbjct: 233 NFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARM 292
Query: 360 ISGLVEKYRPDAIII-DANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
+ + I DA+ + L G+ V D N
Sbjct: 293 LKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPAVKDRINAVN 352
Query: 412 ---RRTELHVKMADWL-EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD 467
E WL L + L+ G E + G +
Sbjct: 353 GMLLNDEG---ARRWLVNTDRCP---TLTEALEQQ---AYDKNG----EPDKSTGHDHPN 399
Query: 468 YSDGLMYTFAENPPRSDMD 486
+ G + M
Sbjct: 400 DAQGYFLVHRYPITPTGMS 418
>gi|273810556|ref|YP_003344937.1| gp2 [Sodalis phage SO-1]
gi|258619841|gb|ACV84094.1| gp2 [Sodalis phage SO-1]
Length = 461
Score = 69.2 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 67/467 (14%), Positives = 132/467 (28%), Gaps = 60/467 (12%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
P A R +Q + + ++ +G G GK+ + A V+
Sbjct: 20 RPPRPTRVAQAVRLYQPDCLPHQVELLRDTKTKILGLC------SGFGGGKSWVAARKVI 73
Query: 100 WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
L++ PG I + L ++ E+ K W + ++
Sbjct: 74 QLLTLNPGHDGIVTEPTIPLLVKIMYPELEKAFDEA-GFRWKFNKQDKIYSVLVKGKWTR 132
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER- 218
E + + I+ DE T + L L R
Sbjct: 133 VIC----------------ESMENYTRLIGVNAAWIVADEFDTTKQDVALAAYHKLLGRL 176
Query: 219 --NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
R +++ S P + + + + T + F + + ++Y
Sbjct: 177 RAGFVRQFVIVSTPEGYRAMYQIFEVEKDSQKRLIRAKTTDNHHLPADFIDTLRSQY--P 234
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
+++ + G F + + EE + E P LI+G D V V
Sbjct: 235 ANLIDAYLNGLFVNLTSGAVYKMFNREENASTE-EVQPEDTLIIGMDFNVTKMAAVVYVR 293
Query: 337 RR-----GPVIEHLFDWSK-TDLRTTNNKISGLVEKYRPDAIII------DANNTGARTC 384
R+ ++ + + DL T I + E+Y D++ +T
Sbjct: 294 RQRITENKEFLDEIHAVDEFVDLFDTPAMIEAIEERYPDHCAAGRVVVYPDSSGKSRKTV 353
Query: 385 -------DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK--MADWLEFASLINHSGL 435
LE G+ V D N T + + + +L L
Sbjct: 354 NASSSDIAQLEDAGFEVEYDSVNPPVKDRLIAMN--TMMCNSKGVRQYF--VNLDKCPTL 409
Query: 436 IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPR 482
+ L+ + + + E + G + + G R
Sbjct: 410 AKCLE-QQVYDLKKG-----EPDKTAGVDHMNDAAGYPIAHLFPVIR 450
>gi|225220117|ref|YP_002720084.1| phage terminase large subunit [Enterobacteria phage SSL-2009a]
gi|224986058|gb|ACN74622.1| phage terminase large subunit [Enterobacteria phage SSL-2009a]
Length = 461
Score = 69.2 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 66/467 (14%), Positives = 131/467 (28%), Gaps = 60/467 (12%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
P A R +Q + + ++ +G G GK+ + A V+
Sbjct: 20 RPPRPTRVAQAVRLYQPDCLPHQVELLRDTKTKILGLC------SGFGGGKSWVAARKVI 73
Query: 100 WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
L++ PG I + L ++ E+ K + F +
Sbjct: 74 QLLTLNPGYDGIVTEPTIPLLVKIMYPELEKAFDEAGFRWKF-------------NKQDK 120
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER- 218
+ ++ + E + + I+ DE T + + L R
Sbjct: 121 IYNVLVKGKWTRVIC----ESMENYTRLIGVNAAWIVADEFDTTKQDVAMAAYHKLLGRL 176
Query: 219 --NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
R +++ S P + + + + T + F + + ++Y
Sbjct: 177 RAGFVRQFVIVSTPEGYRAMYQIFEVEKGSQKRLIRAKTTDNHHLPADFIDTLRSQY--P 234
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
+++ + G F + + E + E P LI+G D V V
Sbjct: 235 ANLIDAYLNGLFVNLTSGAVYKMFNREGNASTE-EVHPDDTLIIGMDFNVTKMAAVVYVR 293
Query: 337 RRG------PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII------DANNTGARTC 384
R+ E DL T I + E+Y D++ +T
Sbjct: 294 RQRITENKEFRDEIHAVDEFVDLFDTPAMIEAIEERYPEHCAAGRVVVYPDSSGKSRKTV 353
Query: 385 -------DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK--MADWLEFASLINHSGL 435
LE G+ V D N T + + + +L L
Sbjct: 354 NASSSDIAQLEDAGFEVEYDSVNPPVKDRLIAMN--TMMCNSKGVRQYF--VNLDKCPTL 409
Query: 436 IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPR 482
+ L+ + + + E + G + + G R
Sbjct: 410 AKCLE-QQVYDLKKG-----EPDKTAGVDHMNDAAGYPIAHLFPVIR 450
>gi|165928475|ref|ZP_02224307.1| P-loop protein [Yersinia pestis biovar Orientalis str. F1991016]
gi|165919510|gb|EDR36843.1| P-loop protein [Yersinia pestis biovar Orientalis str. F1991016]
Length = 397
Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/431 (12%), Positives = 104/431 (24%), Gaps = 77/431 (17%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ +V H +P FK + AGR GK+ L+ ++ + V +A +
Sbjct: 7 LSLVQLHSGQMQVFQSPHRFKV-VCAGRRWGKSRLSISTIIRAAAKEKKQRVWYVAPTYQ 65
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ LW ++ + L + + +
Sbjct: 66 MARQILWDDLQEVLPRKWVRKKNDTTMTIVLKNGSE------------------------ 101
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
I + + PD + L+ I T K +
Sbjct: 102 -----------------IALKGADKPDTWYKVLRPTLSSTRGGALIIGTPKGFSEFHKLW 144
Query: 239 EIFNKP----LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
I WK +Q T + + E D E F
Sbjct: 145 TIGQNKDLQRKGQWKSWQFVTADSPFVPSAEIEAAKNDM--DPKSFAQEYLASFENMSGR 202
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD--NTVVVLRRGPVIEHLFDWSKTD 352
+ P + N P + P + + D ++V++ + D
Sbjct: 203 VYYPFD-----RNVHVKPLQFNPKLPIWVGQDFNIDPMSSVILQPQPNGELWAVDEVVLF 257
Query: 353 LRTTNNKISGLVEKYRPDAIII----DANNT------GARTCDYLEMLGY-HVYRVLGQK 401
T L ++ + D G D + G+ V
Sbjct: 258 SSNTAEVCDELERRFWRWKSQVTIFPDPAGAYRQHARGESDVDIFKEKGFLRVDYPKKHP 317
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVK 461
D NR + L + SL+ I + +
Sbjct: 318 PIADRVNAVNR------MLMSASGETRLYIDPKCKHLIDSLEKVIYKPGSR---DMDKTG 368
Query: 462 GAKSTDYSDGL 472
G + +D L
Sbjct: 369 GIEH--SADAL 377
>gi|259418958|ref|ZP_05742875.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
gi|259345180|gb|EEW57034.1| phage DNA Packaging Protein [Silicibacter sp. TrichCH4B]
Length = 478
Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 58/420 (13%), Positives = 108/420 (25%), Gaps = 71/420 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ S G + + + Q++ + S L
Sbjct: 86 ILGGRGAGKTRAGAE---WVRSEVEGAEPFGIGRARRMALVGETYDQVRDVMIHGDSGIL 142
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ P E ++ T
Sbjct: 143 ACSPPDRRPEWRAGERRL------------------VWPNGATAQAFSASDPEALRGPQF 184
Query: 193 MAIINDEASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
A DE + + + R A +T+ PR + + +
Sbjct: 185 DAAWVDELAKWRRAQDAWDMLQFALRLGAAPRVCVTTTPRNV--PLLKQLLESPSTVTTH 242
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ P F + ARYG S + R E+ G + ++E+ R+
Sbjct: 243 APTEANRANLAPGFLTEVRARYG-GSRLARQELDGVMLADVDGALWTSGMLEQLQRRDRP 301
Query: 312 PDPYAPLIMGCDI---AEEGGDNTVVVLR----------RGPVIEHLFDWSKTDLRTTNN 358
P +++ D A +G D +++ +
Sbjct: 302 --PLDRIVVAVDPSVSAHKGSDACGIIVAGAQTQGPISEWRAYVLADHTVQGLGPTGWAR 359
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+ YR + ++ + N GA L + V R E
Sbjct: 360 AAIAARDAYRAERLVAEVNQGGALVGTVLRQVDPLVPFTPVHASKGKAA-----RAEPVA 414
Query: 419 KMADWLEFASLINHSGLIQN--LKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
+ + L + L + + + +G S D D L++
Sbjct: 415 ALYEQGRVHHAPGLQELEEQMCLMTAQGY---------------RGDGSPDRVDALVWAL 459
>gi|37651634|ref|NP_932508.1| gp17 [Aeromonas phage 44RR2.8t]
gi|34732934|gb|AAQ81472.1| terminase DNA packaging enzyme large subunit [Aeromonas phage
44RR2.8t]
Length = 613
Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 73/476 (15%), Positives = 133/476 (27%), Gaps = 86/476 (18%)
Query: 14 KLFDLMWSDE--IKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVN 71
K M ++ K F ++ + R +Q + + ++ + L + N
Sbjct: 92 KWTKEMLAERKRCKEDIVYFAENYCCIEHIDYGIIRVQL-RDYQKDMLRIMAGNRLMAAN 150
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
R +GKTT+ A + + +V LA+ + L +
Sbjct: 151 L------------SRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMSAEVLHRT-KQA 197
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L LLP+ P + S+ + + +
Sbjct: 198 LELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFS-------SSPDAVRGNS 239
Query: 192 GMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF------NK 243
I DE + P+ + I ++ +MT+ P L +Y+I+ N
Sbjct: 240 FALIYVDEVAFIPNFTDAWMAIQPVISS-GRRSKILMTTTPNGL-NHWYDIWTAAITPNS 297
Query: 244 PLDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDS------------------DVTRVEV 284
D K + + + G DS D + E
Sbjct: 298 SGDGSKSGFVPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTIAGSALDAFQQE- 356
Query: 285 CGQFPQQDIDSFI------PLNIIE----EALNREPCPDPYAPLIMGCDIAEEGGDNTVV 334
Q + I LN I+ + P I D AE G +
Sbjct: 357 HNTAFQGTSGTLINGTKLSKLNWIDIPPQDNFTMFEEPKEGRKYIATLDSAEGRGQD--Y 414
Query: 335 VLRRGPVIEH-------LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
I ++ + T + + + Y I I+ N+TG L
Sbjct: 415 HAMHIFDITEFPYKQVAVYHSNTTSHLILPDVLLKYLNMYFQPYIYIELNSTGVSIAKSL 474
Query: 388 -EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI-NHSGLIQNLKS 441
L Y + + + + + D +E LI NH I L++
Sbjct: 475 YSELDYENVICDSYQDLGLKQT-KRSKAIGCSTLKDLIEKDKLILNHKKSIMELRT 529
>gi|66391955|ref|YP_238880.1| gp17 [Aeromonas phage 31]
gi|62114792|gb|AAX63640.1| gp17 [Aeromonas phage 31]
Length = 613
Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 73/476 (15%), Positives = 133/476 (27%), Gaps = 86/476 (18%)
Query: 14 KLFDLMWSDE--IKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVN 71
K M ++ K F ++ + R +Q + + ++ + L + N
Sbjct: 92 KWTKEMLAERKRCKEDIVYFAENYCCIEHIDYGIIRVQL-RDYQKDMLRIMAGNRLMAAN 150
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
R +GKTT+ A + + +V LA+ + L +
Sbjct: 151 L------------SRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMSAEVLHRT-KQA 197
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L LLP+ P + S+ + + +
Sbjct: 198 LELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFS-------SSPDAVRGNS 239
Query: 192 GMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF------NK 243
I DE + P+ + I ++ +MT+ P L +Y+I+ N
Sbjct: 240 FALIYVDEVAFIPNFTDAWMAIQPVISS-GRRSKILMTTTPNGL-NHWYDIWTAAITPNS 297
Query: 244 PLDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDS------------------DVTRVEV 284
D K + + + G DS D + E
Sbjct: 298 SGDGSKSGFVPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTIAGSALDAFQQE- 356
Query: 285 CGQFPQQDIDSFI------PLNIIE----EALNREPCPDPYAPLIMGCDIAEEGGDNTVV 334
Q + I LN I+ + P I D AE G +
Sbjct: 357 HNTAFQGTSGTLINGTKLSKLNWIDIPPQDNFTMFEEPKEGRKYIATLDSAEGRGQD--Y 414
Query: 335 VLRRGPVIEH-------LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
I ++ + T + + + Y I I+ N+TG L
Sbjct: 415 HAMHIFDITEFPYKQVAVYHSNTTSHLILPDVLLKYLNMYFQPYIYIELNSTGVSIAKSL 474
Query: 388 -EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI-NHSGLIQNLKS 441
L Y + + + + + D +E LI NH I L++
Sbjct: 475 YSELDYENVICDSYQDLGLKQT-KRSKAIGCSTLKDLIEKDKLILNHKKSIMELRT 529
>gi|114766464|ref|ZP_01445429.1| terminase, large subunit, putative [Pelagibaca bermudensis
HTCC2601]
gi|114541321|gb|EAU44370.1| terminase, large subunit, putative [Roseovarius sp. HTCC2601]
Length = 434
Score = 68.8 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/422 (13%), Positives = 111/422 (26%), Gaps = 70/422 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ + G V + + Q++ + S L
Sbjct: 41 IMGGRGAGKTRAGAE---WVRTCVEGALPLSPGRCRRVALVGETLDQVREVMVFGESGIL 97
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ P + G
Sbjct: 98 ACSPPDRRPDW------------------HAGRRCLVWPNGAEAMVFSAHDPEGLRGPQF 139
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
A DE + + R R + + R G E+ LD
Sbjct: 140 DAAWVDELAKWKKARETWDMLQFALRLGERPQVCVTTTPRNVGVLKELLE--LDSTVVTH 197
Query: 253 IDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
T + SF + ARYG ++ + R E+ G + ++E A E
Sbjct: 198 AKTEANRANLAASFLREVRARYG-NTRLARQELDGVLVTDVDGTLWTQAVLERARGAEM- 255
Query: 312 PDPYAPLIMGCDI---AEEGGDNTVVVLR----------RGPVIEHLFDWSKTDLRTTNN 358
P+ + +++ D +G D +++ +
Sbjct: 256 PERFDRIVVAVDPPAGEGQGADACGILVAGAVCAGPPQAWRAWVLEDASVQGASPTGWAE 315
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
++ +++ D ++ + N GA L + V R E
Sbjct: 316 AVAAAYGRWQADRVVAEVNQGGAMVETVLRQVAPQVPLRKVHATRGKAA-----RAEPVA 370
Query: 419 KMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
+ + + +++ L ++ F G S D D L++
Sbjct: 371 ALYEQGRVAHCGVLDTLEEQMGLMTVSGFA---------------GQGSPDRVDALVWAL 415
Query: 477 AE 478
E
Sbjct: 416 TE 417
>gi|294677220|ref|YP_003577835.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
gi|294476040|gb|ADE85428.1| terminase-like family protein [Rhodobacter capsulatus SB 1003]
Length = 455
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 63/474 (13%), Positives = 119/474 (25%), Gaps = 92/474 (19%)
Query: 30 NFVLHFFPWGEKGTPLEGFSAPR-SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGI 88
N L PW + L P +W+ I GRG
Sbjct: 32 NNALLALPWIFEFWALPHQLPPVGAWKSWV-----------------------IMGGRGA 68
Query: 89 GKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GKT A V P V + + Q++ + S L+ P E
Sbjct: 69 GKTRAGAEWVRMQVEGAGPADAGPAHRVALVGETFDQVRDVMIFGESGILACSPPDRRPE 128
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
++ T A DE +
Sbjct: 129 WEATKRRL------------------VWANGATAQAYSAQEPEALRGPQFDAAWVDELAK 170
Query: 203 TP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
+ + L + ++T+ PR + G I N P T
Sbjct: 171 WRRAEETWDMLQFALRL-GKHPQQVITTTPRNV-GVLKAILNNPS--TVVTHAPTEANRA 226
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
+ + + R E+ G + + +E R P +++
Sbjct: 227 YLAESFLAEVQARYAGTRLGRQELEGVLLEDVEGALWTTAQLEGL--RLASPPAMDRVVV 284
Query: 321 GCDIAEEG---GDNTVVVL--------RRGPVIEHLF-DWSKTDLRTTNNKISGLVEKYR 368
D A G D +V+ + L + +E++
Sbjct: 285 ALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASVRGRPTDWARAAIAAMERWG 344
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLEF 426
+ ++ + N G L + V +A+ ++ R E + + ++
Sbjct: 345 AEKLVAEVNQGGEMVESVLRQIDPLVPF-----KALRASRGKSARAEPVAALYEQGRVKH 399
Query: 427 ASLINHSGLIQNL--KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
L + +++ + G S D D L++ E
Sbjct: 400 CRDGRLGALEDQMCRMTVRGYA---------------GKGSPDRVDALVWAMTE 438
>gi|220903993|ref|YP_002479305.1| hypothetical protein Ddes_0719 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868292|gb|ACL48627.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 461
Score = 68.4 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/318 (11%), Positives = 68/318 (21%), Gaps = 37/318 (11%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRG-IGKTTLNAWLVLWLMST--RPGISVICLA 114
+ V+ + E + + GKT ++ R A
Sbjct: 1 MLHVIPYIPRPLQWRFHEERTRFCVLLCHRRFGKTVAAVNDLIRQALVSGREDWRAAYAA 60
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
Q K W ++ +P + E + + P
Sbjct: 61 PFLGQAKAVAWDYCKRFAGAVPGTRFLESELACILP---------------------TGA 99
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN-LGILGFLTERNANRFWIMTSNPRRL 233
+ Y ++ DE + P + L +R + T
Sbjct: 100 RIRLLGTENAQALRGLYLDDLVLDEPADMPRQVWTQIFRPMLADRQGRALFCGTPQGTDN 159
Query: 234 S--GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + W RF+ + D E F
Sbjct: 160 LLYDAWEQAGADSSGLWSRFRFPASQTGYLPAQELAAARRAM--DEAEYLQEFECSFAAA 217
Query: 292 DIDSFIPL---NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW 348
S+ E R P P+ D+ D T + +E W
Sbjct: 218 VRGSYYAPLLDAADREGRIRTVPHAPELPVHTAWDLGM--DDATAIWF---FQVEPSGQW 272
Query: 349 SKTDLRTTNNKISGLVEK 366
D + +
Sbjct: 273 RFVDYYEASGEGLAHYAH 290
>gi|328472888|gb|EGF43736.1| terminase large subunit [Vibrio parahaemolyticus 10329]
Length = 431
Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/391 (11%), Positives = 89/391 (22%), Gaps = 51/391 (13%)
Query: 80 GAISAGRGIGKTTLNAWLVLW--LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
+ GRG GKT +L + L +T ++ ++ + VS +
Sbjct: 27 IVLKGGRGSGKTFAIICYMLEQSFEEKYRDSLFLVLREIQTSIEDSVHSVVSDLIKQAGL 86
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ +F++ + ++ + S + + G H +
Sbjct: 87 EQYFKITHSKIINK-------LTNVEFAFTGLRSTGGKTSFSQVNKIKGKHKVR--MVFM 137
Query: 198 DEASGTPDVINLGILGFLTERNA-----------------------NRFWIMTSNPRRLS 234
DEA + + + NP
Sbjct: 138 DEAQDASQDSLDVLFPTVNRSGNVSFTSEYERLLRLAFGAEEVDLTEARFFFAMNPNFAE 197
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
D I+ + D E G G+ +
Sbjct: 198 DPVITKVRSFGDRAVIKHINIFDLPKRYQDTQLLEQAERERGE--VTWPHVWLGEPSPKI 255
Query: 293 IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR--RGPVIEHLFDWSK 350
+ A E + D + +G D T + +
Sbjct: 256 SGYPFAETPVVTAEEDEELLQ----CVAFLDPSYKGDDFTALSFVSQTRGYVFAWGYCFP 311
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF-- 408
+ ++I+ + + + N G DY + G D F
Sbjct: 312 HSWNSAIDQIAEKINSFPVVEFYYEDNGVGTAPQDYFSVRGIDAIPRTTLGNKHDRIFRV 371
Query: 409 --CRNR-RTELH--VKMADWLEFASLINHSG 434
N R L +WL N
Sbjct: 372 GAFLNLMRLRLVENWSNQEWLTQHKKFNKDA 402
>gi|330810733|ref|YP_004355195.1| phage terminase protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327378841|gb|AEA70191.1| Putative phage terminase protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 439
Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 46/384 (11%), Positives = 80/384 (20%), Gaps = 66/384 (17%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTL--------NAWLVLWLMSTRPGISVIC 112
+ V GR GKT L W +S +
Sbjct: 20 NIYCWGFQPEARFRDAVC------GRRFGKTFLGKAEMRRAAKLAAAWNVSVEDE--IWY 71
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A ++ Q + W + + + + +
Sbjct: 72 AAPTQKQARRVFWRRLKQAIPKSWLVTKPNETDMLITLK--------------------S 111
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTE-----------RNA 220
+ + + I+ DE + I L+ +
Sbjct: 112 GHLLRCVGLENYDDLRGSGLFFILVDEWADCKYAAWEEVIRPMLSTCTYTLPNGEVRKGG 171
Query: 221 NRFWIMTSNPRRL-SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
+ I T F + D + + + + P E + D
Sbjct: 172 HALRIGTPKGFNHCYDTFQDGKPGHEPDHRSWLYTSLDGGNVPPEEIEAARRKM--DPRT 229
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
R E F + N EA L +G D V V+R
Sbjct: 230 FRQEYEASFENYQGVVYYTFN--REANRTSETIKRGEALHIGMDFNVMKMAAVVHVIRDD 287
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART-------CDYLEMLGY 392
+ D KI + DA+ + L+ G+
Sbjct: 288 LPLALSEFSEVRDTPEMIEKIKLRFPDHSIAIYP-DASGQNTSSKSASESDLSLLKKAGF 346
Query: 393 HVYRVLGQKRAVDL-----EFCRN 411
V D N
Sbjct: 347 TVIVDSTNPAVKDRVNAMCAMFAN 370
>gi|159897910|ref|YP_001544157.1| hypothetical protein Haur_1384 [Herpetosiphon aurantiacus ATCC
23779]
gi|159890949|gb|ABX04029.1| hypothetical protein Haur_1384 [Herpetosiphon aurantiacus ATCC
23779]
Length = 477
Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/441 (12%), Positives = 112/441 (25%), Gaps = 68/441 (15%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
I R +G + L LWL +PG V+ + + + L V + LP
Sbjct: 58 VLILKARQLGISWLCCAYALWLCLFQPGKVVLIFSKGQGEADEML-QRVKRLYERLPEWM 116
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH-HNTYGMAIIND 198
+ L D+ + G + +I D
Sbjct: 117 REASPA----------------LVTDNTTELEWANGSRVKSLPATKGAGRSFTASLVILD 160
Query: 199 EASG--TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
EA+ + + + + L + + + + +
Sbjct: 161 EAAFLLWATQLYTALKPTIDGGGQLIVLSTANGIGNLFHQLWLKAISAKNRFTTIFLPWW 220
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEV-----CGQFPQQDIDSFIPLNIIEEALNRE-- 309
D +++ + Y D D+ R E +P + + +
Sbjct: 221 ARPTRDAAWYHNQLEEY-TDPDMVRQEYPSTAQEAFLVSGRTRFKMPWLLKQNPSDGLAL 279
Query: 310 ----------------PCPDPYAPLIMGCDIA---EEGGDNTVVVLRRGPVIEHLFDWSK 350
P I+ D+A E G ++ E K
Sbjct: 280 DELPASLSLLDGVTVYHLPQQGRRYILAADVAEGLEHGDFCAATLIDAVSWEEMASVHGK 339
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCR 410
+ + L + Y + ++ NN G +++ G+ V G
Sbjct: 340 WEPDEYARILMNLSDVYG-ATVAVERNNHGHAVLTTMKLAGFT-RIVYGLDGRAGWLTNA 397
Query: 411 NRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKST---- 466
+ ++ A L + + N ++ + + G G +
Sbjct: 398 QTKPQMIDLFATALRDVLVTIRNQTALNELAI--YRILKNG----------GTGAPAGYH 445
Query: 467 D---YSDGLMYTFAENPPRSD 484
D + + A P +
Sbjct: 446 DDFVMAWAIALMVASQPMEVE 466
>gi|260427953|ref|ZP_05781932.1| phage DNA Packaging Protein [Citreicella sp. SE45]
gi|260422445|gb|EEX15696.1| phage DNA Packaging Protein [Citreicella sp. SE45]
Length = 409
Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 64/418 (15%), Positives = 115/418 (27%), Gaps = 62/418 (14%)
Query: 82 ISAGRGIGKTTLNAWLVLW----LMSTRPG--ISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V M PG V + + Q++ + S ++
Sbjct: 16 IMGGRGAGKTRAGAEWVRACVEGAMPLSPGRCKRVALIGETMDQVREVMVFGESGIMNCS 75
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P E Q+ G A
Sbjct: 76 PPDRRPEWQATRRCL------------------VWPNGAEAMVFSAHDPEGLRGPQFDAA 117
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + + R + + R G E+ P R + +
Sbjct: 118 WVDELAKWKKARETWDMLQFALRLGEHPQVCVTTTPRNVGILKELLELPSTVVTRAKTEA 177
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ SF E + ARYG +S + R E+ G + +++ A P P +
Sbjct: 178 NRA-NLAESFLEEVRARYG-NSRLARQELDGILVTDVDGALWTGEMLDRAQALAP-PATF 234
Query: 316 APLIMGCDIAEEG---GDNTVVVLR----------RGPVIEHLFDWSKTDLRTTNNKISG 362
+++ D D +V+ + +
Sbjct: 235 DRIVVAVDPPAGDGKASDACGIVVAGVVCEGPPQAWRAWVLEDASVQGVSPTGWAQAAAA 294
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
E+++ D ++ + N GA L + V R E + +
Sbjct: 295 AYERWQADRVVAEVNQGGAMVETVLRQVSPQVPLRKVHATRGKAA-----RAEPVAALYE 349
Query: 423 WLEFASLINHSGL--IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + +GL ++ L + + G +G S D D L++ E
Sbjct: 350 ---QGRVGHAAGLAGLEEQMGL----MTSAGY--------QGQGSPDRVDALVWALTE 392
>gi|326385269|ref|ZP_08206932.1| putative phage terminase protein [Gordonia neofelifaecis NRRL
B-59395]
gi|326196012|gb|EGD53223.1| putative phage terminase protein [Gordonia neofelifaecis NRRL
B-59395]
Length = 439
Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/389 (13%), Positives = 108/389 (27%), Gaps = 52/389 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISV 110
WQ+ +++ + ++ R GKT L A ++L + G V
Sbjct: 10 MPWQILAADLIGECDASGRLIH----PLVVVTVPRQSGKTALLAAVMLHRLIMLGEGGRV 65
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A + + + +W E+ + + G
Sbjct: 66 WYTAQTGIKAREQMW-EMMDAIDRSALGPL-----------------IKSKRGAGDTSME 107
Query: 171 TMCRTYSEE-RPDTFVGHHNTYGMAIINDEASGTPDVI----NLGILGFLTERNANRFWI 225
+ + P T H + DEA + I + R + I
Sbjct: 108 LLGTGARAKMHPPTPDSLHGNQSDLNVIDEAWFFDEPQAHGLMGAITPTQSTRPNAQTII 167
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGII--------------- 270
+++ S F+++ + D +D +G+ P + I
Sbjct: 168 ISTAGTAESVWFHDLVARGHDGALCL-VDYGVADGVTPDDYPAIAAAHPAIGHTQKAAIL 226
Query: 271 -ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
A S + G + +P I++ ++ GC ++ E
Sbjct: 227 PAAREQLSSGEFLRAYGNVRTRTESRLLPAEIVDA-ATTTTPLPATGAVVFGCALSFERD 285
Query: 330 DNTVV---VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
D +V G + L T + + L +++ + I D
Sbjct: 286 DAAIVACMAADDGTPVVELVARF-TSAEGVAARCAELTDRHGG-HVAIAPAGPAGSIADD 343
Query: 387 LEMLGYHVYRVLGQK-RAVDLEFCRNRRT 414
+ LG V R + + +F R
Sbjct: 344 ADRLGATVTRYADAELSSSTADFLDRIRA 372
>gi|315655961|ref|ZP_07908859.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
gi|315490025|gb|EFU79652.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
Length = 460
Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 61/448 (13%), Positives = 122/448 (27%), Gaps = 67/448 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
H S + P + + GRG GKT A LV PG + +A E+ +++
Sbjct: 43 HARASQHPPTGAWTEWLLMTGRGWGKTRTAAELVRDWA-KNPGTQIAVVAKKESLVRSIC 101
Query: 125 WAEVSK-WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
+ + L ++P + + T +
Sbjct: 102 FEHKTSGLLHVIPKSDQARFNASGGSGRFFLQLKN--------------GSTIYGFGAEV 147
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFL-----TERNANRFWIMTSNPRRLSGKFY 238
DE + + + + T P +
Sbjct: 148 PDNLRGFAFDKAWFDEFAAWNKQTAQEVYDMMWYDLRESPSPQMVISTTPKPLK---HVR 204
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
++ +KP R + + E + YG + + R E+ G+ + +
Sbjct: 205 DLVSKPGVVITRGH-TKDNLPNLSAIALEKLERDYGK-TRLGRQELAGELIESIEGALWD 262
Query: 299 LNIIEEALNREPCPDPYAPLIMGCD---------------IAEEGGDNTVVVLRRGPVIE 343
+ + ++ + R P +++G D +A D +
Sbjct: 263 VTMFQDPVFRPDTMPPLEDIVVGVDPAVRSSEGADMTAFTVAARAEDAPGMFPDHLNHGY 322
Query: 344 HLFDWSKTDLR-TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR 402
L K L KY ++++ANN G L+M+ V + +
Sbjct: 323 ILEAIQGHYTPRDAMAKAGELARKYGASRVVLEANNGGEYLPTVLQMVAPGVPWKIVHAQ 382
Query: 403 AVDLEFCRNRRTELHVKMADWLEFASL--INHSGLIQNLKSLKSFIVPNTGELAIESKRV 460
+A E + + ++L+S +
Sbjct: 383 QDKRGRAM--------PVATLYEQGRIHHYGGAEKFEDLES-QMVTYTGAA--------- 424
Query: 461 KGAKSTDYSDGLMYT----FAENPPRSD 484
G KS D D +++ F D
Sbjct: 425 -GEKSPDLLDSMVWALTELFLSPVGHGD 451
>gi|227494268|ref|ZP_03924584.1| phage terminase protein [Actinomyces coleocanis DSM 15436]
gi|226832002|gb|EEH64385.1| phage terminase protein [Actinomyces coleocanis DSM 15436]
Length = 468
Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 57/422 (13%), Positives = 114/422 (27%), Gaps = 65/422 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + V + +S R GKT L L + M ++
Sbjct: 33 MPWQQQV-ANVVTQIDPNTPGAWKYP-TVIVSVPRQAGKTALLRALAVDRMLAYNSHEIL 90
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A + + W ++ L + F++ + G + Y
Sbjct: 91 MTAQTGKDARKR-WKQIITALDVEKKHDSFKV---------------REAQGSERIEYLR 134
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF-----LTERNANRFWIM 226
S P H + DEA + L + LT ++ +
Sbjct: 135 RGSYISPFAPT-PKSVHGDSLHMVTIDEAWAFDEASGLALEAAINPTQLTILDSQMIVVS 193
Query: 227 TSNPRRLSGKFYEIFNKPLD-----------DWKRFQIDTRTVEGID----------PSF 265
T + I +W R +
Sbjct: 194 TKGTGNSAYLNRLIQQGRQAVTDPMASVAYFEWSADPDAVRENPYSPQAISFHPALGHTQ 253
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDID---SFIPLNIIEEALNREPCPDPY-APLIMG 321
E I + S + + ++ + IPL I E + P P + + +
Sbjct: 254 DEKKILKLAESSTLASWKRGILNLDEETTGGIAVIPLEIWERLNDGHPAPPASPSTVEIA 313
Query: 322 CDIAEEGGDNTVVVLR-RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D++++G ++ I +S K++ L ++ I D + T
Sbjct: 314 FDVSKDGDGASIAAAWKDPAGIHTSLMYSAPGTAWLRPKLAELYQR-GYTRITADDSGTN 372
Query: 381 ARTC-DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL--IQ 437
D LE V + ++ A + D ++ + + + L ++
Sbjct: 373 RTIIQDLLERHSIRVKTLSAREYAT-----------ACQALIDRVKSGEITHDNALPVLE 421
Query: 438 NL 439
L
Sbjct: 422 QL 423
>gi|9631142|ref|NP_047924.1| gp33 [Streptomyces phage phiC31]
gi|3947452|emb|CAA07103.1| gp33 [Streptomyces phage phiC31]
Length = 519
Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 59/470 (12%), Positives = 134/470 (28%), Gaps = 64/470 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG---IS 109
WQ E + ++ + + R GK+T+ A ++L+ + G
Sbjct: 51 PWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 110
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+I AN Q + ++ + ++ P Y D + + D+
Sbjct: 111 IIAAANDRNQAR-MVFDSAKQMVNASP---KLAAVCDVQRDVIRYKDNTYRVVSADAGRQ 166
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ D + ++ + ++ + L I + + +
Sbjct: 167 --QGLNPAAVSLDEYAFSKHSDLFDALTLGSAARNQPMFLIISTAGPDPDGPFAALCEQG 224
Query: 230 PRRLSGK------FYEIFNKPLD------DWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
R SG+ FY + L D ++ + + ++P + R S
Sbjct: 225 ERVNSGEADDPTLFYRSWGPKLGETVDHLDPDVWRACNPSYDILNPDDFKAAAQRSTEAS 284
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
R+ QF + P + + + +P +++G D + +G +V R
Sbjct: 285 --FRIYRLSQFVRGASTWL-PHGLWDSLAADDDPLEPGDEVVLGFDGSWKGDSTALVACR 341
Query: 338 RGP-VIEHLFDWSKTDLR--------TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ L W ++ ++ YR ++ D T D LE
Sbjct: 342 IRDLKVFVLGHWEAPADDAHWRVPMADVREELHTALDVYRVRNLVADPYRW-EETLDNLE 400
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH-----------SGLIQ 437
G+ V A + T+ D L + + L +
Sbjct: 401 ADGFPVEAFPTNSLARMVPA-----TQAVY---DACRDGRLSHDGNPALGRHIGNAVLKE 452
Query: 438 NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
+ + + + I D + ++ + +
Sbjct: 453 DARGARITKEHASSRRKI-----------DLAVAMVLAVHGAVMWREDNG 491
>gi|251810445|ref|ZP_04824918.1| large terminase subunit [Staphylococcus epidermidis BCM-HMP0060]
gi|251806049|gb|EES58706.1| large terminase subunit [Staphylococcus epidermidis BCM-HMP0060]
Length = 420
Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/310 (11%), Positives = 86/310 (27%), Gaps = 24/310 (7%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
E GRG GK++ + ++ + R ++ + + ++ L T+++ ++ +
Sbjct: 24 REKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWAIEE 82
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H F+++ + + + ER + + +
Sbjct: 83 QKVSHLFKVKVSPMEITYVP-----------RGNRIIFRGAQNPERLKSLKDSRFPFSIM 131
Query: 195 IINDEASGTPDVINLGI-----LGFLTERNANRFWIMTSNPRRLSGKFYEIFNK--PLDD 247
I + A + I G L + +F+ + P+R + + D+
Sbjct: 132 WIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQPDN 191
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
I F + + + R E G+ +P N ++
Sbjct: 192 TFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGEAIGSG---VVPFNNLQIETI 248
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
+ D + + G D D V + + + +
Sbjct: 249 PQEMIDGFDNIRNGLDFG-YADDPLAFVRWHYDKKKRVIYAIDEYYGVQISN-RQYANEM 306
Query: 368 RPDAIIIDAN 377
D
Sbjct: 307 WKRKYQSDDI 316
>gi|291335422|gb|ADD95035.1| phage terminase large subunit [uncultured phage MedDCM-OCT-S04-C26]
Length = 446
Score = 68.0 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 60/435 (13%), Positives = 109/435 (25%), Gaps = 56/435 (12%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFK-GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E ++ + A + +SAG G GKT + + L + G +
Sbjct: 25 ELLDRIRADLHPPQQQFFDNQNEIVGLSAGYGAGKTRALCSMAVKLAAQNIGFIGAVMEP 84
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ ++ + +L + F L + + +
Sbjct: 85 TAPLIRDIWQTDFELFLEQYEIPYTFRASPLPEYTMHFKEGDSKLLCRSFENWSRIIGLN 144
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
S D + D ILG L N +F S P
Sbjct: 145 LSHVLVDEIDVV------------SPVIADKAFPKILGRLRAGNVRQFCAA-STPEGFRW 191
Query: 236 ---KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
F K D + ++ T+ + F E + A Y D + + + G+F
Sbjct: 192 LYNTFGTDEAKERTDRELIKMRTQDNPHLPSDFIERMQANY--DPSMLQAYLNGEFINLT 249
Query: 293 IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD 352
E + PL +G D G N V+ + + + + S +
Sbjct: 250 TGQVYDRFTRENNMTNIKPDIGLEPLRVGLDF-NIGNMNAVIGIVQDQKLLIFDEISGSH 308
Query: 353 LRTTNNKISGLVEKYRPDAIIIDANNTGART------CDYLEMLGYHVYRVLGQKRAVDL 406
+ + + DA+ T LE G+ D
Sbjct: 309 DTDSLAQTIKSRYPMNKIYVYPDASGGNRSTNASQTDIQILESYGFSNQSPRSNPPVRDR 368
Query: 407 EFCRNR---------RTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
R ++H +E L G E
Sbjct: 369 VSAVQALLCNGKGESRLQIHASCRKLIESMELQ---------------SYNTKG----EP 409
Query: 458 KRVKGAKSTDYSDGL 472
+ G +D +
Sbjct: 410 DKESGYDH--MADAV 422
>gi|323163418|gb|EFZ49244.1| terminase, ATPase subunit domain protein [Escherichia coli E128010]
Length = 129
Score = 68.0 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 34/133 (25%), Gaps = 14/133 (10%)
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT-GARTCDYLEMLGYHVYRVLGQK 401
+ I +Y + I ID G ++
Sbjct: 1 METRRVQGLEFEEQARVIEEFTYRYNVEHIGIDVTGGNGEAVYQIVKRFFPAAIPYTFTL 60
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESK 458
+ +R+ L +KM + L+ +++ G + E+
Sbjct: 61 SS--------KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETD 110
Query: 459 RVKGAKSTDYSDG 471
R +G D +
Sbjct: 111 RARGISHGDLAWA 123
>gi|253583089|ref|ZP_04860297.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834981|gb|EES63534.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 492
Score = 68.0 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 61/443 (13%), Positives = 125/443 (28%), Gaps = 53/443 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR--PGI 108
PR++Q++ M+ PE+ + A+SA RG+GK L M G
Sbjct: 10 PRNFQIKVMKA-----------FLPEMSRVAVSASRGMGKD--ITGLACADMICNLKKGA 56
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
+V L S LK L+ K + +S + + +
Sbjct: 57 NVGYLGTSLKALKKILFVNDDKTGRPMFQTVINTESLVSTRTGEYLHKDMSNFQYKNGSK 116
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ + E + I E++ + G + N I T
Sbjct: 117 ILLLGTDQNNELGTSLDAL--------IVTESARFSRDKWKFLRGNVDRANGRILEISTP 168
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRT------VEGIDPSFHEGIIARYGLDSDVTRV 282
+ + + + + D + E + +Y D
Sbjct: 169 FFASEFNELLDGNLEVSKTYTMILVPATEGFNADGTRVYDDAKLEWLKTQY--DEATFLQ 226
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG--- 339
E + D+ + ++ ++A + + + D TV+
Sbjct: 227 EYMVSTKAMNNDAVLGHSL-KKAKRLDVFSNVGYDRELWFSFDLGQSDYTVMFTWYKDSN 285
Query: 340 ---PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII------DANNTGARTCDYLEML 390
PV+ ++T L ++ + + DANN L
Sbjct: 286 LDVPVLIDSMIRNQTSLNEFIDQCKHTANELVVSPYNVKIILPFDANNDLQGYAGKLNRK 345
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL-----INHSGLIQNLKSLKSF 445
+ + + ++ + + N + +E + N +I+ L S+
Sbjct: 346 -REIEQNVPEEWTIKIIQKMNI-IRMLQLCRMVIETGKIGIIDDPNGDYIIKILSSVNYK 403
Query: 446 IVPNTGELAIESKRVKGA--KST 466
TG L +E + G
Sbjct: 404 RDGKTGNLIMEVDKRSGMFEDHP 426
>gi|121591052|gb|ABH10668.2| terminase subunit [Klebsiella phage KPP95]
Length = 302
Score = 68.0 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/312 (12%), Positives = 84/312 (26%), Gaps = 44/312 (14%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
+ + F + R +Q + +E++ A + N
Sbjct: 16 KCRDDIVYFAETYCA-ITHIDYGTIKVQLRDYQRDMLEIMAAKRMTCCNL---------- 64
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R +GKTT+ A + + +V LA+ + L + + LLP+
Sbjct: 65 --SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DRTKQAIELLPD----- 116
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
P + S+ +D+ + I DE +
Sbjct: 117 ------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAVRGNSFAMIYIDECAF 163
Query: 203 TPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV- 258
P+ L I + + R + T + + + + + +V
Sbjct: 164 IPNFIDAWLAIQPVISSGRRSKIIITTTPSGLNHFYDIWTAAVEGKSGFTPYTAIWNSVK 223
Query: 259 -------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ D + + + + E C +F + I + E
Sbjct: 224 ERLYNDEDMFDDGWQWSLQTISASSLEQFKQEHCAEFH-GTSGTLISGMKLANMDWIEVT 282
Query: 312 PDPYAPLIMGCD 323
PD + +
Sbjct: 283 PDSHGFYNLRSG 294
>gi|295688413|ref|YP_003592106.1| hypothetical protein Cseg_0983 [Caulobacter segnis ATCC 21756]
gi|295430316|gb|ADG09488.1| protein of unknown function DUF264 [Caulobacter segnis ATCC 21756]
Length = 445
Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/406 (12%), Positives = 105/406 (25%), Gaps = 62/406 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GKT A ++ + G + + + ++ + S +L
Sbjct: 77 GGRGAGKTYAGAAWLIEQATA--GARLALVGPTFHDVREVMIEGPSGLKALSLPDEHPRW 134
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
++ T + A DE
Sbjct: 135 EASRRRL------------------VWPNGATAYAFSAEDPDSLRGPQFHAAWADEFCAW 176
Query: 204 P---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
P D + + G + T P R ++ +
Sbjct: 177 PKPGDTLAMLRFGLRLGADPRLVVTTTPKPHRA----LKVLMAEPGVSLTRAGTSANAGN 232
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
+ P+F + + YG + + E+ G + D F ++ R D +++
Sbjct: 233 LAPAFLRTLESLYG-GTRLAAQELDGVIVETDGGLFRAEDLARCRAARPARLD---RVVV 288
Query: 321 GCDIAEEGGDNTVVVLRRGPV-----IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
D G + ++ G + + + DA++ +
Sbjct: 289 AVDPPATAGGDACGIVVVGRRDDRAFVLADETARGLSPAGWAARAVAAARAWSADALVAE 348
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH--- 432
AN G L L + R E + + +++
Sbjct: 349 ANQGGDMVRSVLAQADPPCRVKLVRASVGKRA-----RAEPVAALYE---QGRVLHCGSF 400
Query: 433 SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
L + L +L +G S D +D L++ +E
Sbjct: 401 VALEEELMAL------GSG---------DLEHSPDRADALVWAVSE 431
>gi|255103207|ref|ZP_05332184.1| hypothetical protein CdifQCD-6_20513 [Clostridium difficile
QCD-63q42]
Length = 582
Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 58/463 (12%), Positives = 123/463 (26%), Gaps = 108/463 (23%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
A RG+GK+ L + +PG V+ A + Q K + +++ + +
Sbjct: 68 ASRGLGKSWLLGVFCCVIAVLKPGTCVLIAAKRKKQAKLLITSKIL-------GDLYLKS 120
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+L + + S+ + E + +I DE
Sbjct: 121 DTLKREIKSFQVNAQEVSIDFWNGS--------RIEAVVSNDDARGYRANVLIVDEYRMV 172
Query: 204 PDVI-NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR------ 256
+ N ++ FLT + NP+ + W +
Sbjct: 173 DEGTVNDVLVPFLTNPRQPGYLQ---NPKYRYMQEENKEIYLSSGWYSQHWSYKKFMETV 229
Query: 257 --------------------TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + + + +E CG F + D+F
Sbjct: 230 KGMLSGEDMFACSIPFTCSLEHGLLTKKRILKEMKKESMSDASFMMEYCGVFYNESDDAF 289
Query: 297 IPLNIIEEAL-------------------NREPCPD----PYAPLIMGCDIA---EEGGD 330
+ + R+ I+G DIA D
Sbjct: 290 FKSSWVNPCRVLESMFYPPSDIEYLENKKKRDKKYHLNKIKGEIRIIGADIALARGVKND 349
Query: 331 NTVVVLR--------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
N++ L + H+ ++ + ++ L ++ D +I+D G
Sbjct: 350 NSIYTLMRMLPNEGTYKRCVVHIEAYNGMEAEKQAIRLKQLFSDFQADYMILDTQGIGTT 409
Query: 383 T--------CDYLEMLGYHVYRVLGQKRAVDL-------------EFCRNRRTELHVKMA 421
D Y Y + VD + + ++ + +
Sbjct: 410 VWSYIQKANYDSDRDEWYDAYTCFNEDNTVDKSLAKKSLPVVYSMKAYADENHKMAMSLR 469
Query: 422 DWL--EFASLINHS----GLIQNLKSLKSFIVPNTGELAIESK 458
D L L +I + +K+ + + +E+K
Sbjct: 470 DVLTNRTLELPISDIEAKEMILEKEMIKADEIDK--KAELEAK 510
>gi|114319804|ref|YP_741487.1| hypothetical protein Mlg_0643 [Alkalilimnicola ehrlichii MLHE-1]
gi|114226198|gb|ABI55997.1| hypothetical protein Mlg_0643 [Alkalilimnicola ehrlichii MLHE-1]
Length = 509
Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 58/412 (14%), Positives = 115/412 (27%), Gaps = 45/412 (10%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ P + + AGR KT A + ++L + A + L
Sbjct: 44 ALFKRLSGDREPPQRQARELWAIAGRRSDKTHTAAGIAVYLAT--------IGAELDGTL 95
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
E L ++ ++ + S V+ + ++ + S E
Sbjct: 96 ARLTAGERGVVQLLAVDRQQAKVALGYVRGLFADSPVMSSLVEKENTEGVLLRNGVSIEV 155
Query: 181 PD-TFVGHHNTYGMAIINDEASGTPD--------VINLGILGFLTERNANRFWIMTSNPR 231
+ +A I DE + D + ++ L + S+P
Sbjct: 156 ATNSHRAVRGRTLLAAILDECAFFKDEATATPDVEVYRALVPSLATTGG--MLVGISSPY 213
Query: 232 RLSGKFYEIFNKPLDDW-KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
G Y + K + T++ I D + + E GQF
Sbjct: 214 ARRGLLYSKWRKHYGKPGDVLVVQGGTLDFNPTLDPRVIAEAEQDDPEAAKAEWHGQFRA 273
Query: 291 QDIDSFIPLNIIEEAL---NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR---GPVIEH 344
F+ ++ E P D + D + + G +
Sbjct: 274 DVEG-FVTREAVDACTVPARIELPPVAGERYTAFVDPSGGSKDAFTLAIAHQSDGVAVVD 332
Query: 345 LFDWSKT--DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR 402
K + +GL+++YR ++ D G R L +K+
Sbjct: 333 AIRAQKPPFSPEAVVKEFAGLLKEYRISKVVGD-------------RYGGEFPRELFRKQ 379
Query: 403 AVDLEFCRNRRTELHVKMADWLEFASLINHS--GLIQNLKSLKSFIVPNTGE 452
+ + +++L+ M L + L L SL+ G+
Sbjct: 380 GIAYKLSDRPKSDLYRDMLPLLNSGRVELLDNGRLQNELTSLER-RTSRAGK 430
>gi|302339289|ref|YP_003804495.1| hypothetical protein Spirs_2798 [Spirochaeta smaragdinae DSM 11293]
gi|301636474|gb|ADK81901.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
Length = 295
Score = 67.6 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/291 (14%), Positives = 85/291 (29%), Gaps = 59/291 (20%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ ++ + + ++ R GK+T+ A G +
Sbjct: 33 PFLWQDWALDQ--------------SLRRLLLNCCRQAGKSTVIAAKAAHKAKFFSGSLI 78
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
I ++ + Q K + F S PA + L S+ +
Sbjct: 79 ILVSPALRQSKELM-----------RKVEDFIALDKSFPPASEEDNQLTKEFKNRSRIVA 127
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ II DEAS PD + I + + ++ + P
Sbjct: 128 LPGSEKTIRGLSGP--------TLIIIDEASRIPDELYKAIRPMMAGADTE--LVLMTTP 177
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRT--VEGIDPSFHEGIIARYG-------------- 274
G FY+ +++ W + ++ R + + + + G
Sbjct: 178 FGKRGVFYDAWSR-SKRWTKIEVVGRDILGRFPNEQVYAQLRRKDGIKACYSPRHSVEFL 236
Query: 275 ------LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ R E G+F F + + A+ + +AP+I
Sbjct: 237 GEELEEMGEWWYRQEYGGEFMDPIDSVF-NMEDVRAAIINDTPAISFAPII 286
>gi|329735579|gb|EGG71866.1| phage terminase, large subunit, PBSX family [Staphylococcus
epidermidis VCU028]
Length = 420
Score = 67.6 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/305 (11%), Positives = 85/305 (27%), Gaps = 24/305 (7%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GK++ + ++ + R ++ + + ++ L T+++ ++ + H
Sbjct: 29 VVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWAIEEQKVSH 87
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
F+++ + + + ER + + + I +
Sbjct: 88 LFKVKVSPMEITYVP-----------RGNRIIFRGAQNPERLKSLKDSRFPFSIMWIEEL 136
Query: 200 ASGTPDVINLGI-----LGFLTERNANRFWIMTSNPRRLSGKFYEIFNK--PLDDWKRFQ 252
A + I G L + +F+ + P+R + + D+
Sbjct: 137 AEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQPDNTFVHH 196
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
I F + + + R E G+ +P N ++ +
Sbjct: 197 STYLDNPFISKQFIQEAESTKERNELRYRWEYMGEAIGSG---VVPFNNLQIETIPQEMI 253
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
D + + G D D V + + + +
Sbjct: 254 DGFDNIRNGLDFG-YADDPLAFVRWHYDKKKRVIYAIDEYYGVQISN-RQYANEMWKRKY 311
Query: 373 IIDAN 377
D
Sbjct: 312 QSDDI 316
>gi|6467533|gb|AAF13179.1|AF181080_1 putative gene transfer agent large terminase [Rhodobacter
capsulatus]
Length = 393
Score = 67.6 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 55/419 (13%), Positives = 108/419 (25%), Gaps = 68/419 (16%)
Query: 84 AGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V P V + + Q++ + S L+ P
Sbjct: 2 GGRGAGKTRAGAEWVRMQVEGAGPADAGPAHRVALVGETFDQVRDVMIFGESGILACSPP 61
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
E ++ T A
Sbjct: 62 DRRPEWEATKRRL------------------VWANGATAQAYSAQEPEALRGPQFDAAWV 103
Query: 198 DEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + + + L + ++T+ PR + G I N P T
Sbjct: 104 DELAKWRRAEETWDMLQFALRL-GKHPQQVITTTPRNV-GVLKAILNNPS--TVVTHAPT 159
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ + + R E+ G + + +E R P
Sbjct: 160 EANRAYLAESFLAEVQARYAGTRLGRQELEGVLLEDVEGALWTTAQLEGL--RLASPPAM 217
Query: 316 APLIMGCDIAEEG---GDNTVVVL--------RRGPVIEHLF-DWSKTDLRTTNNKISGL 363
+++ D A G D +V+ + L +
Sbjct: 218 DRVVVALDPAVTGGAGSDECGIVVAGAVTRGPVQDWRAFVLEDASVRGRPTDWARAAIAA 277
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD- 422
+E++ + ++ + N G L + V +A+ ++ R E + +
Sbjct: 278 MERWGAEKLVAEVNQGGEMVESVLRQIDPLVPF-----KALRASRGKSARAEPVAALYEQ 332
Query: 423 -WLEFASLINHSGLIQNL--KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
++ L + +++ + G S D D L++ E
Sbjct: 333 GRVKHCRDGRLGALEDQMCRMTVRGYA---------------GKGSPDRVDALVWAMTE 376
>gi|254474412|ref|ZP_05087798.1| phage DNA Packaging Protein [Ruegeria sp. R11]
gi|214028655|gb|EEB69490.1| phage DNA Packaging Protein [Ruegeria sp. R11]
Length = 417
Score = 67.6 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 59/415 (14%), Positives = 104/415 (25%), Gaps = 63/415 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V L +S + L + Q++ + S L+
Sbjct: 25 ILGGRGAGKTRAGAEWVRALAEGSTPLSAGRARRIALLGETYDQVRDVMVQGDSGILACT 84
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P + ++ T A
Sbjct: 85 PPDRRPQWKATERRL------------------IWPNGATAQAFSAHDPEALRGPQFDAA 126
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + L R + T+ R ++ P +
Sbjct: 127 WADELAKWKRGQDSWDMLQFALRLGTDPRVCVTTTP--RNVSVLRDLLASPST-VQTHAA 183
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ SF E + RY S + R E+ G Q + + A R
Sbjct: 184 TEANRANLATSFIEEVRNRYA-GSRLGRQELDGVLLQDVEGALWCNAGLVGAQVRSAP-- 240
Query: 314 PYAPLIMGCDIA---EEGGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKI 360
P +++ D A + D +++ + +
Sbjct: 241 PLDRVVVAVDPAVSAGKSSDACGILVVGAVLQGPPQDWRAYVLADCTVQGARPLVWAQAV 300
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
++ D ++ + N GA L + V R + R E +
Sbjct: 301 VDAAHRFDADRVVAEVNQGGALVESLLRQIDPLVPF-----RPRHAARSKGARAEPVAAL 355
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ L L + + G L G S D D L++
Sbjct: 356 YEQGRVRHLPGLGALEDQMCQ-----MTPRGYL--------GQGSPDRLDALVWA 397
>gi|92118001|ref|YP_577730.1| phage terminase [Nitrobacter hamburgensis X14]
gi|91800895|gb|ABE63270.1| phage Terminase [Nitrobacter hamburgensis X14]
Length = 545
Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 55/399 (13%), Positives = 103/399 (25%), Gaps = 73/399 (18%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGI 108
W + + VF RG KT+L A L L PG
Sbjct: 47 DRWMERVIRRIYGPRHPDGTRIVKTVFAMI---PRGNRKTSLGAALTLLHSIGPEKTPGG 103
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V+C A + Q + + E + + + ID ++
Sbjct: 104 QVVCAAADQKQAR-IAFEEAVGIIRS-------------------HKTINRVVDIIDHRN 143
Query: 169 YSTMCRTYSEERPDTFVG--HHNTYGMAIINDEASGTPD-VINLGILGFLTERNANRFWI 225
R+ S + H + DE P + + L + + I
Sbjct: 144 RFRDQRSGSLVEAISADAKTQHGRTPSFTLMDEIHAWPKRDLWEALKTGLVKTAGSLNVI 203
Query: 226 MTSNPRRLSGKFYEIFNKPLD----------------------DWKRFQIDTRTVEGIDP 263
+T+ R +E ++ DW+ I R G+
Sbjct: 204 ITTAGRGQENIAFEQYSYARKVALGEIDDPATLPVIFEAPADCDWQDETIWHRVNPGLKH 263
Query: 264 --------SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII-EEALNREPCPDP 314
D D + + F+ ++I E A
Sbjct: 264 GYPDLDGLRQLAREGRERPGDRDSFKQLNLNIWSDSSSSPFVGMDIYDEGADPINLDALA 323
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
P +G D++ +V R G ++ F + +L+ + ++ D
Sbjct: 324 GQPCWLGVDLSSNTDLTVIVAAWRDGTGGYIVHPWFYCPRMNLQERTDITGAAYIQWERD 383
Query: 371 AI-------IIDANNTGARTCDYLEMLGYHVYRVLGQKR 402
+ID D + ++V +
Sbjct: 384 GFITATQGEVIDFRAVEVGIRDLCDR--FNVQEICFDPA 420
>gi|86750583|ref|YP_487079.1| hypothetical protein RPB_3472 [Rhodopseudomonas palustris HaA2]
gi|86573611|gb|ABD08168.1| Protein of unknown function DUF264 [Rhodopseudomonas palustris
HaA2]
Length = 431
Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 57/410 (13%), Positives = 103/410 (25%), Gaps = 62/410 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLM------STRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V L + RP + + S + + S L P
Sbjct: 48 GGRGAGKTRTGAEWVRALAHGTPPYAERPHRRIALIGESWQDAREVMVEGESGLLRCSPR 107
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
E + D A
Sbjct: 108 AERPEWIASRRRLE------------------WRNGAVGQVFSADDPESLRGPQFDAAWC 149
Query: 198 DEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + + + L R + T+ R + P
Sbjct: 150 DELAKWRYAEACFDTLQFGLRLGLQPRQLVTTTP--RPLPLIKRLLADPRTR-VTRAPTK 206
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ + P+F + ++ RY + + R E+ G+ + D+ +IE R P
Sbjct: 207 ANADHLSPAFLDAVVGRYA-GTRMGRQELDGEMIEDRADALWSRALIESC--RVAQPPGL 263
Query: 316 APLIMGCDIAEEGG---DNTVVVLRRG-----PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
A +++ D D +V + + K L +
Sbjct: 264 ARVVVAIDPPGTSKVGADACGIVAVGRSDSGAYYVLEDASAAGLSPAAWAAKAVALYHRL 323
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLE 425
D +I + N G L V + R E + + ++
Sbjct: 324 DADTLIAEVNMGGEMVRAVLRETDGAVPLKEVRASRGKY-----LRAEPVAALYEQGKVK 378
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
L+++ ++G S D D L++
Sbjct: 379 HVGCFP---LLEDEMCDFGIDGLSSGR------------SPDRLDALVWA 413
>gi|163742707|ref|ZP_02150092.1| terminase, large subunit, putative [Phaeobacter gallaeciensis 2.10]
gi|161383962|gb|EDQ08346.1| terminase, large subunit, putative [Phaeobacter gallaeciensis 2.10]
Length = 417
Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 61/418 (14%), Positives = 105/418 (25%), Gaps = 63/418 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V L +S + L + Q++ + S L+
Sbjct: 25 ILGGRGAGKTRAGAEWVRTLAEGATPLSAGRARRIALLGETYDQVRDVMVQGDSGLLACT 84
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P ++ T A
Sbjct: 85 PRDRRPTWKATERRL------------------IWPNGATAQAFSAHDPEALRGPQFDAA 126
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + L + R + T+ R G E+ P +
Sbjct: 127 WADELAKWKRGQDSWDMLQFALRLGDDPRVCVTTTP--RNVGVLRELLASPS--TVQTHA 182
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
T + + S + R E+ G Q + + A
Sbjct: 183 ATEANRANLAASFLAEVRNRYAGSRLGRQELDGILLQDIEGALWTNAGLVAAQI--AKAP 240
Query: 314 PYAPLIMGCDIA---EEGGDNTVVVLR----RGP------VIEHLFDWSKTDLRTTNNKI 360
+++ D A + D +V+ +GP + T
Sbjct: 241 TLDRVVVAVDPAVSAGKHSDACGIVVVGATLQGPPQDWCAYVLADCTVQGVGPLTWAQAA 300
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
++Y D ++ + N GA L + V A+ + R E +
Sbjct: 301 IDARDRYGADRVVAEVNQGGALVESLLRQIDPLVPF-----TALHASRGKGARAEPVAAL 355
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + L L + G L G S D D L++ E
Sbjct: 356 YEQGRVRHVPGLGALEDQLCQ-----MTPRGYL--------GQGSPDRLDALVWAVQE 400
>gi|313499430|gb|ADR60796.1| P-loop protein [Pseudomonas putida BIRD-1]
Length = 374
Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 45/355 (12%), Positives = 80/355 (22%), Gaps = 54/355 (15%)
Query: 85 GRGIGKTTL-------NAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GR GKT L A L + + A + Q K W + + +
Sbjct: 40 GRRFGKTFLGKAEMRRAARLAAEWGVSVED-EIWYGAPTFKQAKRVFWRRLKQAIPEAWR 98
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
S+ D + + ++
Sbjct: 99 AARPNETECSITLK--------------------SGHIMRVVGLDNYDNLRGSGLFFVLV 138
Query: 198 DEASGTP-DVINLGILGFLTE------------RNANRFWIMTSNPRRL-SGKFYEIFNK 243
DE + + L+ + + I T + +
Sbjct: 139 DEWADCSWAAWEEVLRPMLSTCQYTIPQTGESRKGGHALRIGTPKGFNHCYDTYRDGQPG 198
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
D K +Q + + + + D R E F + + E
Sbjct: 199 GEPDHKSWQYTSLQGGNVPAVELDAARRKM--DPRTFRQEYEAGFENYAGVVYSTFDRAE 256
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL 363
+ P + +G D V V+R G + S D KI
Sbjct: 257 C--HTSERIKPGEAIHIGMDFNVMKMAAVVYVVRDGLPLALDEFHSVRDTPDMIEKIKVR 314
Query: 364 VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
+ DA+ + L+ G+ V D N
Sbjct: 315 FSGHSVSVYP-DASGQNTSSKNASESDLSLLKKAGFTVVVDSKNPGVKDRINAVN 368
>gi|163736656|ref|ZP_02144075.1| hypothetical protein RGBS107_16031 [Phaeobacter gallaeciensis
BS107]
gi|161390526|gb|EDQ14876.1| hypothetical protein RGBS107_16031 [Phaeobacter gallaeciensis
BS107]
Length = 430
Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 63/418 (15%), Positives = 108/418 (25%), Gaps = 63/418 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V L +S + L + Q++ + S L+
Sbjct: 38 ILGGRGAGKTRAGAEWVRTLAEGATPLSAGRARRIALLGETYDQVRDVMVQGDSGLLACT 97
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P ++ T A
Sbjct: 98 PRDRRPTWKATERRL------------------IWPNGATAQAFSAHDPEALRGPQFDAA 139
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + L + R + T+ R G ++ P +
Sbjct: 140 WADELAKWKRGQDSWDMLQFALRLGDDPRVCVTTTP--RNVGVLRDLLASPST-VQTHAA 196
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ SF + RY S + R E+ G Q + + A
Sbjct: 197 TEANRANLAASFIAEVRNRYA-GSRLGRQELDGILLQDVEGALWTNAGLVAAQI--AKAP 253
Query: 314 PYAPLIMGCDIA---EEGGDNTVVVLR----RGP------VIEHLFDWSKTDLRTTNNKI 360
+++ D A + D +V+ +GP + T
Sbjct: 254 TLDRVVVAVDPAVSAGKRSDACGIVVVGATLQGPPQDWCAYVLADCTVQGVGPLTWAQAA 313
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
++Y D ++ + N GA L + V A+ + R E +
Sbjct: 314 IDARDRYGADRVVAEVNQGGALVESLLRQIDPLVPF-----TALHASRGKGARAEPVAAL 368
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + L L + G L G S D D L++ E
Sbjct: 369 YEQGRVRHVPGLGALEDQLCQ-----MTPRGYL--------GQGSPDRLDALVWAVQE 413
>gi|222147998|ref|YP_002548955.1| large terminase [Agrobacterium vitis S4]
gi|221734986|gb|ACM35949.1| large terminase [Agrobacterium vitis S4]
Length = 459
Score = 67.2 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 53/406 (13%), Positives = 106/406 (26%), Gaps = 58/406 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGI--SVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
GRG GKT A V + S + + + + + +S +H
Sbjct: 83 GGRGSGKTRAGAEWVHEIASAGEKSAVRIALVGETLGDAREVMVDGLSGIAR--IARHKR 140
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+S W + + + DE +
Sbjct: 141 PEVEISRRRLVWPNGAM-----------------AQMFSAEDPESLRGPQFHYAWCDEIA 183
Query: 202 GTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
+ + L + R I T+ +
Sbjct: 184 KWKHAEETFDMLQFSLRLGDDPRQVITTTP---RPVPILKRLLADPGTRLTRLSTFGNAC 240
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ P F E + ARYG + + R E+ G+ + D+ + +E+ R P ++
Sbjct: 241 NLAPGFIEALQARYG-GTRLGRQELDGELIEDREDALWRRDRLEQLTVRLSE--PLHRIV 297
Query: 320 MGCDIAEEGGDNTVVVL------RRGP-VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
+G D G +V + R G V+ + + + ++ D +
Sbjct: 298 VGVDPPSGAGAQSVCGIIVAGLDRLGRAVVLADCSVTGESPASWATAVVRAFRRFEADRV 357
Query: 373 IIDANNTGARTCDYLE--MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
+ + N G L+ V V R E + + +
Sbjct: 358 VAEVNQGGEMVGALLKSVDANLPVRMV-----RATRGKF--LRAEPVAALYE---QGRVF 407
Query: 431 NHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
+ + + G +S D D L++
Sbjct: 408 HAARFAD--LEDQMCDFGPEGL--------SNGQSPDRLDALVWAL 443
>gi|192290494|ref|YP_001991099.1| hypothetical protein Rpal_2102 [Rhodopseudomonas palustris TIE-1]
gi|192284243|gb|ACF00624.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
TIE-1]
Length = 386
Score = 67.2 bits (162), Expect = 7e-09, Method: Composition-based stats.
Identities = 62/411 (15%), Positives = 110/411 (26%), Gaps = 64/411 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMS------TRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V +++ TRP + + S + + S L + P
Sbjct: 3 GGRGAGKTRAGAEWVRAMVAGTPPYATRPHGRIALVGESWHDAREVMVEGESGLLRITPR 62
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ E + D A
Sbjct: 63 RERPEWIASRRRLQ------------------WPNGAVGEVFSADDPDSLRGPQFEAAWC 104
Query: 198 DEASGTPDVINLGILGFL---TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE + L A ++T+ PR +
Sbjct: 105 DELAKWR--YAEASFDMLQFGLRLGARPRQLITTTPR--PLPLIKRLLADPHTRVTRAPT 160
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ P+F E ++ARY + R E+ G+ + D+ + IE A R P
Sbjct: 161 RANAAHLSPAFLETVVARYA-GTRQGRQELDGELIEDRPDALWSRDRIERA--RVAAAPP 217
Query: 315 YAPLIMGCDI---AEEGGDNTVVVLRRG-----PVIEHLFDWSKTDLRTTNNKISGLVEK 366
+++ D + G D +V + + + L +
Sbjct: 218 LVRIVVAIDPPGSSRPGADACGIVAAGRSAAGDYYVLEDVSSDRLSPAAWATRAIALYRR 277
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WL 424
DAII + N G L + ++ R E + + +
Sbjct: 278 LEADAIIAEVNMGGEMVRAVLHETD---AAIPVREVRASRAKF--VRAEPVAALYEQGRV 332
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ L+++ TG + S S D D L++
Sbjct: 333 KHVGCFP---LLEDEMC----DFAPTG---LSS-----GHSPDRLDALVWA 368
>gi|262155805|ref|ZP_06028928.1| putative phage terminase [Vibrio cholerae INDRE 91/1]
gi|262030396|gb|EEY49037.1| putative phage terminase [Vibrio cholerae INDRE 91/1]
Length = 586
Score = 66.9 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 44/397 (11%), Positives = 104/397 (26%), Gaps = 42/397 (10%)
Query: 12 EQKLFDLMWSDEIKLSFSNF-------VLHFFPWGEK--GTPLEGFSAPRSWQLEFMEVV 62
E+ D+ S F V+ F+ + G WQ + +
Sbjct: 53 ERHFKDMYRSMYDPSYPYRFDPVKAQRVIDFYKFIRHTKGKLARTVMKLMPWQQFCVGSI 112
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQL 120
+ ++ R GK+TL + L L+ + G + +A + Q
Sbjct: 113 VGWVYKDTGFRRFKQANIWVA--RKNGKSTLASGLGLYFLIADGEVGAEIYSIAVKKDQA 170
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSL-------HPAPWYSDVLHCSLGIDSKHYSTMC 173
K ++ + + LS+ K ++ S+ P SD +
Sbjct: 171 K-IVFDDAVRMLSMSELKEILTVKRDSITFDAEFAKFVPLASDSNSLDGLNTHCFIADEL 229
Query: 174 RTYSEERP----DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
++ + +T G I+ + T
Sbjct: 230 HSWKDRNLWGVMETSTGAREQPLAFSISTAGWILDGIGKELFDDGCTILENYGLEENVFT 289
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI---IARYGLDSDVTRVEVCG 286
+ +K D + + + E + R + +
Sbjct: 290 MN----YTLDDGDKFNDRTCWIKANPCLGVSVKEEDIERLCRKAERMASERANFLTKRLN 345
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMGCDIAEEGGDNTV--VVLRRGPVI 342
+ L+ + + + + I+G D A+ +V + +
Sbjct: 346 VWVNNAEAWL-NLDKLYKCADPNARLEDFEGRDCIIGVDFADYLDLTSVCYLFVNDNGTF 404
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
++ + + + + E+ R + +D
Sbjct: 405 NVFYENFLPN-----SAMDKVSEQMRQRYLRLDDEGY 436
>gi|320105341|ref|YP_004180931.1| hypothetical protein AciPR4_0096 [Terriglobus saanensis SP1PR4]
gi|319923862|gb|ADV80937.1| hypothetical protein AciPR4_0096 [Terriglobus saanensis SP1PR4]
Length = 484
Score = 66.9 bits (161), Expect = 8e-09, Method: Composition-based stats.
Identities = 57/369 (15%), Positives = 100/369 (27%), Gaps = 59/369 (15%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
K + R +G +T A PG + +A++ + ++ V + LP+
Sbjct: 57 KNIVLKARQMGMSTWIAGQFFLKTIQTPGTMTVLVAHT-REATEQMFRIVQRMWENLPDD 115
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
S + +DS+ + R + H + D
Sbjct: 116 LREGPAKRS-----RANVGQMAFPALDSEFRVVSAGEQNAGRSMSIQNLHCSELSRWPGD 170
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
AS G+ L ++ S P G FY+ + + +
Sbjct: 171 AASTL-----AGLKAALAPGGE---MVLESTPNGAYGCFYQEWMEAEAQRMARHFLPWWM 222
Query: 259 EGI-------DPSFHEGIIARYGLD---------SDVTRVEVCGQ-----------FPQQ 291
E + E A + + G +
Sbjct: 223 EPTYLGARVEASDWTEEERALVSREGLRPEQIGYRRELQRTYRGMARQEFAEDAVSCFRA 282
Query: 292 DIDSFIPLNIIEE---------ALNR------EPCPDPYAPLIMGCDIAEE---GGDNTV 333
+ F L+ IE A R P ++ D A G
Sbjct: 283 SGECFFELDAIEARLAELTPPLASRRSGSLLLWMPPVKGRRYLIASDPAGGGSEGDFAAA 342
Query: 334 VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH 393
V+ ++ + + R + L +Y I+++ NN GA YLE G
Sbjct: 343 QVVDIDLGLQCAELRQRLNPRELAEVLIDLAREYNGALIVVERNNHGAGVLAYLEKRGVA 402
Query: 394 VYRVLGQKR 402
VY GQ
Sbjct: 403 VYEEGGQAG 411
>gi|320156410|ref|YP_004188789.1| phage terminase large subunit [Vibrio vulnificus MO6-24/O]
gi|319931722|gb|ADV86586.1| phage terminase large subunit [Vibrio vulnificus MO6-24/O]
Length = 586
Score = 66.5 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 44/397 (11%), Positives = 104/397 (26%), Gaps = 42/397 (10%)
Query: 12 EQKLFDLMWSDEIKLSFSNF-------VLHFFPWGEK--GTPLEGFSAPRSWQLEFMEVV 62
E+ D+ S F V+ F+ + G WQ + +
Sbjct: 53 ERHFKDMYRSMYDPSYPYRFDPVKAQRVIDFYKFIRHTKGKLARTVMKLMPWQQFCVGSI 112
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQL 120
+ ++ R GK+TL + L L+ + G + +A + Q
Sbjct: 113 VGWVYKDTGFRRFKQANIWVA--RKNGKSTLASGLGLYFLIADGEVGAEIYSIAVKKDQA 170
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSL-------HPAPWYSDVLHCSLGIDSKHYSTMC 173
K ++ + + LS+ K ++ S+ P SD +
Sbjct: 171 K-IVFDDAVRMLSMSELKEVLTVKRDSITFDAEFAKFVPLASDSNSLDGLNTHCFIADEL 229
Query: 174 RTYSEERP----DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
++ + +T G I+ + T
Sbjct: 230 HSWKDRNLWGVMETSTGAREQPLAFSISTAGWILDGIGKELFDDGCTILENYGLEENVFT 289
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI---IARYGLDSDVTRVEVCG 286
+ +K D + + + E + R + +
Sbjct: 290 MN----YTLDDGDKFNDRTCWIKANPCLGVSVKEEDIERLCRKAERMASERANFLTKRLN 345
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMGCDIAEEGGDNTV--VVLRRGPVI 342
+ L+ + + + + I+G D A+ +V + +
Sbjct: 346 VWVNNAEAWL-NLDKLYKCADPNARLEDFEGRDCIIGVDFADYLDLTSVCYLFVNDNGTF 404
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
++ + + + + E+ R + +D
Sbjct: 405 NVFYENFLPN-----SAMDKVSEQMRQRYLRLDDEGY 436
>gi|114569469|ref|YP_756149.1| hypothetical protein Mmar10_0918 [Maricaulis maris MCS10]
gi|114339931|gb|ABI65211.1| protein of unknown function DUF264 [Maricaulis maris MCS10]
Length = 450
Score = 66.5 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 69/448 (15%), Positives = 111/448 (24%), Gaps = 65/448 (14%)
Query: 52 RSWQLEFMEVVDA-------HCLNSVNNPNP-EVFKGAISAGRGIGKTTLNAWLVLWLMS 103
R+W E H P P E GRG GKT A V
Sbjct: 27 RAWHKEADRQERDAIHTDFRHRATGPQLPPPGEWLTWLFLGGRGAGKTRAGAEWVRHRAL 86
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
R + + + ++ + S KH +
Sbjct: 87 -RTVSRIALVGPTFNDVREVMIEGPSGL------KHLGSAMERPRYE------------A 127
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI--NLGILGFLTERNAN 221
+ + G DE + PD + + A
Sbjct: 128 SRKRLVFPSGSQAYAFSAEDADGLRGPQFDYAWGDEFAAWPDPQRVLDTLRMGVRLGGAP 187
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLDDWK-RFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
R + T+ + K P + Q + P F E + A YG S +
Sbjct: 188 RILLTTTPRPIPALKALVKAWDPRGPIRVTHQPTAANAANLAPGFVEALNAAYG-GSMLG 246
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVL- 336
R EV G + IE A +++ D D +V+
Sbjct: 247 RQEVEGLLIDDPDGALWTRPKIEAARLAAGQMPELDRIVVALDPPATGGPRSDECGIVVA 306
Query: 337 -------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
R V+ + + + + Y DA+I +AN G L+
Sbjct: 307 GAHGEGPARIAVVLADLSFGPALPADWAARAASAFDDYSADALIAEANQGGEMVRSVLQA 366
Query: 390 L--GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIV 447
G V V + R E + L + + F
Sbjct: 367 AAPGLPVRLVHAS-------RGKRARAEPVAALYAAGRVRHARPFPALEDQMCA---FGA 416
Query: 448 PNTGELAIESKRVKGAKSTDYSDGLMYT 475
P+ + S D D L++
Sbjct: 417 PDGPK-----------SSPDRVDALVWA 433
>gi|86138748|ref|ZP_01057320.1| terminase, large subunit, putative [Roseobacter sp. MED193]
gi|85824395|gb|EAQ44598.1| terminase, large subunit, putative [Roseobacter sp. MED193]
Length = 417
Score = 66.5 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 53/433 (12%), Positives = 106/433 (24%), Gaps = 63/433 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSET 118
P+ E I GRG GKT A + + G + + +
Sbjct: 8 WAHAHQLPPSGEWRTWVILGGRGAGKTRAGAEWIRTQVEGATPLGPGRGRRLALIGETYD 67
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
Q++ + + S A SD + K
Sbjct: 68 QVRDVM------------------ILGDSGILACSPSDRRPQWKAGERKLIWANGAMAQA 109
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
DE + + L + R + T+ +
Sbjct: 110 FSAHDPEALRGPQFDTAWADELAKWRRAREAWDMLQFSLRLGDDPRVCVTTTPRNAALLR 169
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + + + PSF + ARY S + R E+ G +
Sbjct: 170 QLLASPSTVKSHAATEAN---RANLAPSFLSEVRARYA-GSRLGRQELDGILLSDVEGAI 225
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIA---EEGGDNTVVVLR----------RGPVIE 343
+ A + P +++ D A +G D +++ +
Sbjct: 226 --WRAAQLAELQVPTAPALDRIVVAVDPAVSSGKGSDACGIIVAGACLQGPVETWRAYVL 283
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
+ +++ D ++ + N GA + L + V
Sbjct: 284 ADRTVQGVGPLAWAKAVIAAHQEFAADRVVAEVNQGGALVENLLRQIDPLVGFQPVHASR 343
Query: 404 VDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+ R E + + L + L + + + G
Sbjct: 344 GKV-----VRAEPVAALYEQHRVHHLPGLAELEEQMCQMSQQGFQGQG------------ 386
Query: 464 KSTDYSDGLMYTF 476
S D D L++
Sbjct: 387 -SPDRVDALVWAL 398
>gi|116623201|ref|YP_825357.1| hypothetical protein Acid_4108 [Candidatus Solibacter usitatus
Ellin6076]
gi|116226363|gb|ABJ85072.1| conserved hypothetical protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 436
Score = 66.5 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 55/405 (13%), Positives = 110/405 (27%), Gaps = 51/405 (12%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G GK+ + L G + A + L+ A + + L
Sbjct: 40 GSGKSQALCQEAIRLSYMNQGRLGLLGAPTYPMLRDATQAALLEILQK------------ 87
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
+ P+ + L + R D F T DE + T
Sbjct: 88 --NEIPYEHNKAENLLVFKDTGSRILFRP-----VDEFERLRGTNLAWFGLDELTYTQQE 140
Query: 207 INLGILGFLTERNANRFW-IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI---D 262
L + G L + A + P+ + + P+ + Q +
Sbjct: 141 AWLRLEGRLRDPKATQLCGFAVWTPKGFDWVYRKFITDPVPGYGAIQARPFENRHLLAKV 200
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
F++ + Y D + EV G + + P+PY PL+
Sbjct: 201 GDFYDRLKDSY--DERFYQQEVLGNYLSMQGGRVYG-AFDRTTHIQSVRPNPYLPLLWAL 257
Query: 323 DIAEEGGDNTVVVLRRGP-VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII-DANN-- 378
D + + +V + +G + + + + +I DA+
Sbjct: 258 DFNVDPMSSVIVQVVKGEVRVLDEIVIRRATTGQACEEFLKRYPTHPKGVLIYGDASGSA 317
Query: 379 ---TGARTCDYLEML-----GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL- 429
TGA + V + + + N ++ ++ + +
Sbjct: 318 QQTTGATDYQMVREYFAVNSNVPVQYKVPKSNPGVRDR-VNL---MNRQLRSASDTVGVL 373
Query: 430 --INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
LI + + + N I+ R + SD L
Sbjct: 374 VDPKCKELILDFEQVSYKQETN----IIDKDRDRLRTH--LSDAL 412
>gi|83943081|ref|ZP_00955541.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
gi|83846089|gb|EAP83966.1| hypothetical protein EE36_12908 [Sulfitobacter sp. EE-36]
Length = 259
Score = 66.5 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/257 (15%), Positives = 66/257 (25%), Gaps = 38/257 (14%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P +WQ++ + N +GR GK+T L G +V
Sbjct: 32 PDAWQVDLLRS--------DPRSNEADRMILALSGRQSGKSTTAGGLG--YDDFSRGKTV 81
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
I A S Q L+ + ++ + P P + +
Sbjct: 82 ILTAPSLRQSTE-LFRRILEYKNTDPFCP----------PIVRQTQTELEAHPRHGGRII 130
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ II DEA D E + S P
Sbjct: 131 VVP---------ATDQARGMTADTIIADEACFLDDDALTAFFPMRKETG---RIFLLSTP 178
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
G FYE + +R + + + E A R E +F
Sbjct: 179 NMRQGYFYETWTSA-KRVRRITARSIDIPRR-KAQVEFDKATMSE--ATFRREHLCEFIG 234
Query: 291 QDIDSFIPLNIIEEALN 307
+ +E+A N
Sbjct: 235 AGTP-LVSWEALEKASN 250
>gi|289167314|ref|YP_003445583.1| terminase large subunit [Streptococcus mitis B6]
gi|288906881|emb|CBJ21715.1| terminase large subunit [Streptococcus mitis B6]
Length = 418
Score = 66.5 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 51/396 (12%), Positives = 120/396 (30%), Gaps = 40/396 (10%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P++ GRG GK++ ++ + R ++ +C+ ++ L+ +++ ++ +S
Sbjct: 23 PKILHVVEKGGRGSGKSSDLGHTII-QLIMRYPVNAVCIRKTDNTLEQSVYEQLKWAISE 81
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H F++ L +Y ER + + +
Sbjct: 82 QGVSHLFKINKSPLKITYIP-----------RGNYIIFRGAQDPERIKSLKDSRFPFAIG 130
Query: 195 IINDEASG-----TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK--PLDD 247
I + A + N + G L + +F+ + P+R + + +
Sbjct: 131 WIEELAEFKTEDEVKTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYESVIQPPN 190
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
I +F E A R E G+ P +
Sbjct: 191 THVHHSTYLDNPYISQAFIEEAEATRERSEKRYRWEYLGEAIGSG---VAPFENLVFRKI 247
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR----GPVIEHLFDWSKTDLRTTNNKISGL 363
+ + + G D D V VI + + + +++
Sbjct: 248 TDEEIARFDNIRQGNDFG-YANDPLAFVRWHYDKKKRVIYAIDEIYGVKISN--RELAER 304
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
+ + + +I ++ ++ D L+ L ++ V G K+ D E + D
Sbjct: 305 IREKGYQSQMITCDSAEPKSIDELK-LQLNIPLVQGAKKGPDSREYG----ERWLDDLDA 359
Query: 424 --LEFASLINHSGLIQNLKSLKS-FIVPNTGELAIE 456
++ N + + +S + +E
Sbjct: 360 IVIDPERTPN---IAREFESADYAVDRDGNPKPKLE 392
>gi|154247076|ref|YP_001418034.1| hypothetical protein Xaut_3147 [Xanthobacter autotrophicus Py2]
gi|154161161|gb|ABS68377.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
Length = 416
Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 56/438 (12%), Positives = 111/438 (25%), Gaps = 64/438 (14%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG------ISV 110
+ + GRG GKT A V L RP +
Sbjct: 6 WALWARPDQLPPDTAPSGDPWSTWLVLGGRGAGKTRAGAEWVRGLALGRPPFAGRPVGRI 65
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+A + ++ + VS L++ P +
Sbjct: 66 ALVAETMADVREVMVEGVSGLLAVHPRAERPRWEPTRRRLE------------------W 107
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV---INLGILGFLTERNANRFWIMT 227
+ A DE + ++ G + T
Sbjct: 108 ANGAVAQGFSAEDPESLRGPQFAAAWLDELAKWKRAEATFDMLQFGLRLGAQPRQMVTTT 167
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
P L + + + + + PSF ++ RYG + + R E+ G+
Sbjct: 168 PRPTALLRRLLADPSTAVTRART----ADNAFHLAPSFLGQVLTRYG-GTRLGRQELDGE 222
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVV-----LRRG 339
+ D+ +E RE P +++ D + G D +V
Sbjct: 223 LIEDRADALFSRPALEAL--REAQVPPLTRIVVAVDPPASSRAGADACGIVCAGMDATGV 280
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
+ + K L ++ D I+ + N G + + V
Sbjct: 281 VHVLADDSAAGLRPAQWAAKAVALFRRFEADLIVAEVNQGGEMVRAVIAEVD---DGVPV 337
Query: 400 QKRAVDLEFCRNRRTELHVKMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
++ R E + + + A +++ ++G
Sbjct: 338 EQVRATRGKF--LRAEPVAALYEQGRVRHAGAFPA---LEDEMCDFGTDGLSSGR----- 387
Query: 458 KRVKGAKSTDYSDGLMYT 475
S D D L++
Sbjct: 388 -------SPDRLDALVWA 398
>gi|308094637|ref|ZP_05891088.2| putative phage terminase, large subunit [Vibrio parahaemolyticus
AN-5034]
gi|308091007|gb|EFO40702.1| putative phage terminase, large subunit [Vibrio parahaemolyticus
AN-5034]
Length = 528
Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 87/339 (25%), Gaps = 33/339 (9%)
Query: 19 MWSDEIKL----SFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
D +K F F+ H KG WQ + +
Sbjct: 12 YRFDPVKAQRVIDFYKFIKH-----TKGKLARTVMKLMPWQQFCVGSIIGWVYKDTGFRR 66
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANSETQLKTTLWAEVSKWL 132
+ ++ R GK+TL + L L+ + G + +A + Q K ++ + + L
Sbjct: 67 FKQANIWVA--RKNGKSTLASGLALYFLIGDGETGAEIYSIAVKKDQAK-IVFDDAVRML 123
Query: 133 SLLPNKHWFEMQSLSL-------HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP---- 181
S+ K ++ S+ P SD + ++ +
Sbjct: 124 SMSELKEVLTVKRDSIAFEAEFAKFVPLASDSNSLDGLNTHCFIADELHSWKDRNLWGVM 183
Query: 182 DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
+T G I+ + +T +
Sbjct: 184 ETSTGAREQPMAFSISTAGWILDGIGKELFDDGVTILENYGLEENVFTMN----YTLDDG 239
Query: 242 NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV---TRVEVCGQFPQQDIDSFIP 298
+K D + + + E + + S + +
Sbjct: 240 DKFNDRNCWIKANPCLGVSVKEEDIERLCRKAERMSSERANFLTKRLNVWVNNAEAWLNL 299
Query: 299 LNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTVVVL 336
+ + A D I+G D A+ +V L
Sbjct: 300 DKLYQCADENARLEDFEGRDCIIGVDFADYLDLTSVCYL 338
>gi|330996205|ref|ZP_08320095.1| phage terminase, large subunit, PBSX family [Paraprevotella
xylaniphila YIT 11841]
gi|329573709|gb|EGG55300.1| phage terminase, large subunit, PBSX family [Paraprevotella
xylaniphila YIT 11841]
Length = 430
Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/424 (11%), Positives = 115/424 (27%), Gaps = 79/424 (18%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS------ 133
I+ GRG GK+ A + Q + +A +
Sbjct: 26 ILITGGRGSGKSFNAA--------------TFIERLTFEQSRDRTFAHSILYCRYTMVSA 71
Query: 134 -LLPNKHWFEMQSLSLHPAPWYSD-VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L E + + + ++ + +T S + H
Sbjct: 72 NLSIIPEIQEKIDIDGGSKYFKTTRSDIVNMFSGGRIMFRGIKTSSGNQTAKLKSIHG-- 129
Query: 192 GMAIINDEASGTPDVI-NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD--- 247
+ DEA + I+ + ++ I+ NP + Y+ + +
Sbjct: 130 ITTFVCDEAEEWTNEQDFDKIMLSIRQKGIQNRIIIIMNPTDSNHFIYKKYIENTHKLVE 189
Query: 248 -----------WKRFQIDTR---TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
I T ++ + P F + + + + V G++
Sbjct: 190 IDGVPVQISTHPNVLHIHTTYFDNIDNLSPQFIKEVEQMKAENPEKYAHTVIGRWADVAE 249
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV---VLRRGPVIEHLFDWSK 350
+ + +++ + + +G D + +V V+ I+ +
Sbjct: 250 GAIYKKWGVVKSIPQWCK-----KIALGLDFGFTHDETAIVMCGVMDNDLYIDEICY--- 301
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA------- 403
+ I + Y+ +I D+ + R + G +Y V K +
Sbjct: 302 -KTQMLTKDIIQTLRPYQGMKVIADSADP--RLIQEIHNAGIRIYPVEKGKGSVIAGIEK 358
Query: 404 ------VDLEFCRNRRTEL----HVKMAD--WLEFASLINHSGLIQNLKSLKSFIVPN-T 450
E N EL K D ++ + L + + ++
Sbjct: 359 AKEFNIFVTERSYNLMNELRNYVWDKDKDGHYVNQPADEQDDHLCDSF---RYYVYGMIL 415
Query: 451 GELA 454
G++
Sbjct: 416 GKIQ 419
>gi|33594269|ref|NP_881913.1| putative phage terminase [Bordetella pertussis Tohama I]
gi|33564344|emb|CAE43647.1| putative phage terminase [Bordetella pertussis Tohama I]
gi|332383682|gb|AEE68529.1| putative phage terminase [Bordetella pertussis CS]
Length = 425
Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/439 (12%), Positives = 104/439 (23%), Gaps = 42/439 (9%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P F+ + AG G GKT + + P ++ A + Q++
Sbjct: 5 NQPQARFLALPHKFRAFV-AGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIF 63
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + + + +H K + + D
Sbjct: 64 YPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDEL 123
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
+ + G T + + + +
Sbjct: 124 DVMKADKAALAWRKIIARLRHTAPGLLNGV--------DVTTTPEGFKFVYQQFVKQVRE 175
Query: 245 LDD----WKRFQIDTRTV-EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+ + Q T + + + + A Y + + GQF S
Sbjct: 176 RPELAALYGLVQASTYENGKNLPEDYIPSLRASY--PPQLIAAYLRGQFTNLTSGSVY-A 232
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
N + + +P+ L +G D TV V+R G + D
Sbjct: 233 NFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARM 292
Query: 360 ISGLVEKYRPDAIII-DANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
+ + I DA+ + L G+ V D N
Sbjct: 293 LKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPSVKDRINAVN 352
Query: 412 ---RRTELHVKMADWL-EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD 467
E WL L + L+ + G E + G +
Sbjct: 353 GMLLNDEG---ARRWLVNTDRCP---TLTEALEQQ---VYDKNG----EPDKSTGHDHPN 399
Query: 468 YSDGLMYTFAENPPRSDMD 486
+ G + M
Sbjct: 400 DAQGYFLVHRYPITPTGMS 418
>gi|38234395|ref|NP_940162.1| putative phage terminase protein [Corynebacterium diphtheriae NCTC
13129]
gi|38200658|emb|CAE50354.1| Putative phage terminase protein [Corynebacterium diphtheriae]
Length = 485
Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 47/367 (12%), Positives = 93/367 (25%), Gaps = 44/367 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ + N+ P ++ R GKT + T P +
Sbjct: 49 PMPWQ--VLFHTIVGARNADGRPRWPFIIVSVP--RQSGKTDGVGAQAIHRTLTSPNGKI 104
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A + + + W E+ ++ P + + G ++ +
Sbjct: 105 WYTAQTGQKARDR-WLEMVASVNRSPFAAFARTLKTN---------------GSEALKFE 148
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL-----TERNANRFWI 225
+ + P H+ DEA D ++ + T N +
Sbjct: 149 AINSQFRPHPPTA-DSLHSEQSDLNFIDEAWVFDDATAADLMQAITPTQATRPNRQTVIV 207
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP----------------SFHEGI 269
T + + D F ++ + +DP E +
Sbjct: 208 STMGDAGSTWFHGLVEKGRAGDPGIFLLEFGIADDVDPDDLEAVAAAHPAFGYTQDMEAL 267
Query: 270 IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
A G + IP E+A E P ++ E
Sbjct: 268 RAARASLGAAGFARGYGNRATGARNQLIPSRAYEQAKTLENMPADAPAILAAAIDFERTE 327
Query: 330 DNTVVVLR-RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
G + + + + +++ L + +IID + + L
Sbjct: 328 TAIAAATWADGVPMIEIIEC-RPGTSWAVDRLEALEALPLIEGLIIDDHGPSSTLIGELT 386
Query: 389 MLGYHVY 395
G V
Sbjct: 387 RRGVAVR 393
>gi|315634882|ref|ZP_07890164.1| phage D3 terminase family protein [Aggregatibacter segnis ATCC
33393]
gi|315476434|gb|EFU67184.1| phage D3 terminase family protein [Aggregatibacter segnis ATCC
33393]
Length = 542
Score = 66.1 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/381 (10%), Positives = 85/381 (22%), Gaps = 34/381 (8%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
+ F F + WQ + + +
Sbjct: 28 DESAVNKFLAFSRLCPHVKGHLRGQPIELS--DWQTFLFANLLGFKRTNTG--LRKYRSA 83
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN--- 137
I R K+T+ A L W + G I A ++ + + L P
Sbjct: 84 YIQVARKNAKSTVAAVLANWFLLMESGQQDIYTAAVSRDQARIVFDDARQMCLLSPPLRK 143
Query: 138 -----KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+H + P + S +++ + G
Sbjct: 144 RLNIQQHKLINPKSNSLMRPLAAKSSTIEGTNPSLAIVDEYHLHTDNSVYSALELGQGAR 203
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ I S + + I+ N + S +
Sbjct: 204 PEGLLFAITTAGSNV--------ISACKQHYDYCAQILEGNEQNDSLFVLIFELDEESEI 255
Query: 249 KRFQIDTRTVEGIDP-----SFHEGIIARYGLDSDVTR--VEVCGQFPQQDIDSFIPLNI 301
+ + I F I G+ S+ + + Q N
Sbjct: 256 DNPENWVKANPNIGKSIPYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLGEGNW 315
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNT-VVVLRRGPVIEHL--FDWSKTDLRTTNN 358
+ A + + +G D++ + +G + + + L N
Sbjct: 316 AQCARDYTESDLLHQDCYLGLDLSSTNDLTSLCYTFPQGKKVRLITRHYIPEFQLNNVAN 375
Query: 359 KISGLVEKYRPDAIIIDANNT 379
K + + +I
Sbjct: 376 KNRAIYRNWVRQGWLIATEGD 396
>gi|316934938|ref|YP_004109920.1| hypothetical protein Rpdx1_3618 [Rhodopseudomonas palustris DX-1]
gi|315602652|gb|ADU45187.1| hypothetical protein Rpdx1_3618 [Rhodopseudomonas palustris DX-1]
Length = 431
Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 60/410 (14%), Positives = 110/410 (26%), Gaps = 62/410 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMS------TRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V +++ TRP + + S + + S L + P
Sbjct: 48 GGRGAGKTRAGAEWVRAMVAGTPPYATRPHGRIALVGESWHDAREVMVEGESGLLRITPR 107
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ E + D A
Sbjct: 108 RERPEWIATRKRLE------------------WPNGAVGEVFSADDPDSLRGPQFEAAWC 149
Query: 198 DEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + + + L + R I T+ +
Sbjct: 150 DELAKWRYAEASFDMLQFGLRLGSRPRQLITTTP---RPLPLIKRLLADPHTRVTRAPTR 206
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ P+F E ++ARY + R E+ G+ + D+ + IE A R P
Sbjct: 207 ANAAHLSPAFLETVVARYA-GTRQGRQELDGELIEDRPDALWSRDRIERA--RVGAAPPM 263
Query: 316 APLIMGCDI---AEEGGDNTVVVLRRG-----PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
+++ D + G D +V + + + L +
Sbjct: 264 VRIVVAIDPPGSSRPGADACGIVAAGRSAAGDYYVLEDVSSDRLSPAAWAARAIALYRRL 323
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLE 425
DAI+ + N G L + ++ R E + + ++
Sbjct: 324 EADAIVAEVNMGGEMVRAVLHETD---AAIPVREVRASRAKF--VRAEPVAALYEQGRVK 378
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
L+++ TG + S S D D L++
Sbjct: 379 HVGCFP---LLEDEMC----DFAPTG---LSS-----GHSPDRVDALVWA 413
>gi|150016242|ref|YP_001308496.1| hypothetical protein Cbei_1360 [Clostridium beijerinckii NCIMB
8052]
gi|149902707|gb|ABR33540.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
8052]
Length = 521
Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 79/534 (14%), Positives = 152/534 (28%), Gaps = 114/534 (21%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
++ + F +F +K L F Q +FME + + I
Sbjct: 9 KVWNDPALFSYNFMEIQDKNDELVPFKF-NKLQRDFMENMSRYN--------------II 53
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP------ 136
R +G + + +WL T P + + L+ + K ++ ++ + +P
Sbjct: 54 LKSRQLGFSVMICAYAIWLAITTPNSNCLMLS-YNDESKRAIFNKLKQIYKSIPEEVKPK 112
Query: 137 ----NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD----TFVGHH 188
N+ +M++ S+ +V S + + + + +
Sbjct: 113 LLRNNRSELQMENGSIISCSPMGNVDKGRGNTCSLIWISEFAFVKSDVAEKQILSLEQAL 172
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
N+ G II A+G + I ++R N + N F E + + D W
Sbjct: 173 NSKGKLIIETTANGLNFFHGMYIK---SKRKENFYKSFFYNYLDGKEMFLEQYEEARDTW 229
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYG---LDSDVTRV---------EVCGQFPQQDIDSF 296
K + E + ++ Y LD R + ++P D +F
Sbjct: 230 KNLHNNVPFSEKDLKDDEKELLKNYPNMTLDVLCWRRLKIENSSEDKFNQEYPISDDVAF 289
Query: 297 IPLNI----------------------------------IEEALNREP----CPDPYAPL 318
I +E+ R P P A
Sbjct: 290 ISTGASVFDNKRVSTVLQSILLNKTKYLKKLEIEDLPQELEKFYGRSFFMYKSPTPKAKY 349
Query: 319 IMGCDIAEEG--GDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+G D AE +T +VL +F + ++ L Y ++++
Sbjct: 350 YIGVDTAEGTKKDSSTCIVLAEEGEEVAMFKNNAIKPWQFAEFVNILGRYYNKAYLVVEK 409
Query: 377 NNTGARTCDYLE---------------MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ G + L VY + ++ N +
Sbjct: 410 MSGGHSVIERLRYEKQYLNMHKYKSYDEFNRIVYNIGFDTKSKTKSLVIN-------DLR 462
Query: 422 DWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ E L+ HS I K F + + G + S D L
Sbjct: 463 EMFEKGQLLLHSAEILEEM--KVFEISDNGSMGAMS-----GYHDDLVMALALA 509
>gi|307308946|ref|ZP_07588629.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti
BL225C]
gi|306900580|gb|EFN31193.1| hypothetical protein SinmeBDRAFT_4513 [Sinorhizobium meliloti
BL225C]
Length = 408
Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 11/141 (7%)
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
GKT + A V W + + V SE+ +K +W+ + + + S
Sbjct: 208 WGKTYVAAIAVWWSLVCFDDVKVTIFGPSESLIKNGMWSNLQALHARMA----------S 257
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ S + R S + G H + D+A G +V+
Sbjct: 258 SFKDLFDVSATRVSRKTAAPSCFAEYRLVSADNASAARGIHAVNN-FVFVDDADGVSEVV 316
Query: 208 NLGILGFLTERNANRFWIMTS 228
++ + + N + T
Sbjct: 317 IAYLMNIMIDPNPKLCLLSTM 337
>gi|318064394|gb|ADV36428.1| phage terminase large subunit [Edwardsiella phage eiAU]
Length = 460
Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 69/466 (14%), Positives = 131/466 (28%), Gaps = 59/466 (12%)
Query: 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL 101
P++ R+W+++ + H +N+ ++ +G G GKT A + L
Sbjct: 25 PAPVKKERKSRTWRIKTL----PHQRGLINDTTTKILGLC--SGFGGGKTWSAARKAVQL 78
Query: 102 MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
PG I + L ++ E+ K L+ K F Q
Sbjct: 79 AILNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQD---------------- 122
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER--- 218
I + + + + + DE T I + L R
Sbjct: 123 -KIYHCRIAGQMTRIICDSMENYTRLIGVNAAWCVCDEFDTTKPDIAMEAYRKLLGRLRT 181
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
R ++ S P + ++ D + + T + + + + A+Y +
Sbjct: 182 GNVRQMVIVSTPEGFRAMYQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQY--PPE 239
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
+ + G+F + N N + + L++G D V V R
Sbjct: 240 LIEAYLNGEFVNLTGGAVY-RNFSRTLNNCDTVAEDDDTLMIGMDFNVGQMAGAVYVQRI 298
Query: 339 GPVIEHLF----DWSKTDLRTTNNKISGLVEKYRPD---AIIIDANNTGART-------C 384
+E + D + I + I D++ +T
Sbjct: 299 ADGVEEMHLVDEFCGLLDTDAMIDAIKERYPDHHARGLIEIFPDSSGKNRKTTNANTSDI 358
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA--SLINHSGLIQNLKSL 442
LE G+ V D N L+ K L+ + ++
Sbjct: 359 AMLEDAGFTVSYNSVNPAVRDRVNDVN-GMILNGKGQRRLKVNVARCPKATEALEQQI-- 415
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMY--TFAENPPRSDMD 486
P TG + G +D + Y F R +
Sbjct: 416 ---WDPKTG----APDKTSGVDH--MADAIGYPIAFCHPIVRPAAN 452
>gi|282601251|ref|ZP_05981204.2| phage terminase, large subunit, PBSX family [Subdoligranulum
variabile DSM 15176]
gi|282569696|gb|EFB75231.1| phage terminase, large subunit, PBSX family [Subdoligranulum
variabile DSM 15176]
Length = 414
Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/258 (13%), Positives = 70/258 (27%), Gaps = 19/258 (7%)
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
V + GRG GK++ + +++ + P + L L+ ++++++ + L
Sbjct: 24 TVQEVVAKGGRGSGKSSYLSLELVYQLLRHPNCHAVVLRKVAGTLRNSVYSQIVWAIGAL 83
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+F + + G+D + S + P VG
Sbjct: 84 GCSGYFRCTVSPMECTYLPTGQKILFFGLDD-----AGKLKSLKVPFGAVG-------LC 131
Query: 196 INDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+E P+ + L + + P +P
Sbjct: 132 WFEELDQFDGPEEVRSVEQSILRGGDWTLTLKSFNPPAMARSWVNRYVLEPRPGKLVHHS 191
Query: 254 DTRTVEG--IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
R + + F + D R E G+ F L + E +
Sbjct: 192 TYRDLPRQFLGERFWADAEHLRKTNPDAYRHEYGGEVVGSGAAVFDNLTLREVP---DEE 248
Query: 312 PDPYAPLIMGCDIAEEGG 329
+ L G D
Sbjct: 249 IASFDRLYHGVDWGWYPD 266
>gi|115523910|ref|YP_780821.1| hypothetical protein RPE_1893 [Rhodopseudomonas palustris BisA53]
gi|115517857|gb|ABJ05841.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
BisA53]
Length = 423
Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/423 (11%), Positives = 105/423 (24%), Gaps = 64/423 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMS------TRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A + RP + + +E ++ + VS L++ P
Sbjct: 40 GGRGSGKTRAGAEWIRAQALGLPPFADRPMSRIALVGETEHDVREVMIEGVSGLLAVHPR 99
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
Q + +
Sbjct: 100 HERPNWQPSRKRLE------------------WKNGAVAQAFSAEDPESLRGPQFSCAWS 141
Query: 198 DEASGTPDVINLGILGFL---TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE + L ++T+ PR ++ I +
Sbjct: 142 DEMAKWR--YAEATFDMLQFGLRLGPQPRQLITTTPRPIALLKRLIA---DPLSVVTRAP 196
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
TR + + + + R E+ G+ + D+ +IE+ R P
Sbjct: 197 TRANAFNLAPTFLQSVMKRYDGTRLGRQELDGEIIEDRPDALWSRALIEQC--RVEAAPP 254
Query: 315 YAPLIMGCDI---AEEGGDNTVVVL-----RRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
+++ D + + D +V + + + L +
Sbjct: 255 LRRIVVAVDPPVSSTKRSDACGIVAAGLADNNVVHVLADDSVAGASPAAWAMRAIALWRR 314
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WL 424
DA++ + N G + + V V + R E + + +
Sbjct: 315 LEADALVAEINQGGDMVRTVIHGIDRGVPVVPVRATRGKW-----LRAEPVAALYEQGRV 369
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSD 484
+ + +++ ++G S D D L++
Sbjct: 370 KHVGIF---AALEDEMCDFGIDGLSSGR------------SPDRLDALVWAVTALALSRQ 414
Query: 485 MDF 487
Sbjct: 415 HGG 417
>gi|39934961|ref|NP_947237.1| terminase GTA [Rhodopseudomonas palustris CGA009]
gi|39648812|emb|CAE27333.1| probable large terminase, Rhodobacter capsulatus GTA orfg2
homologue [Rhodopseudomonas palustris CGA009]
Length = 386
Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 61/410 (14%), Positives = 109/410 (26%), Gaps = 62/410 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMS------TRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V +++ TRP + + S + + S L + P
Sbjct: 3 GGRGAGKTRAGAEWVRAMVAGTPPYATRPHGRIALVGESWHDAREVMVEGESGLLRITPR 62
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ E + D A
Sbjct: 63 RERPEWIATRKRLE------------------WPNGAVGEVFSADDPDSLRGPQFEAAWC 104
Query: 198 DEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + + + L + R I T+ +
Sbjct: 105 DELAKWRYAEASFDMLQFGLRLGSRPRQLITTTP---RPLPLIKRLLGDPHTRVTRAPTR 161
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ P+F E ++ARY + R E+ G+ + D+ + IE A R P
Sbjct: 162 ANAAHLSPAFLETVVARYA-GTRQGRQELDGELIEDRPDALWSRDRIERA--RVAAAPPL 218
Query: 316 APLIMGCDI---AEEGGDNTVVVLRRG-----PVIEHLFDWSKTDLRTTNNKISGLVEKY 367
+++ D + G D +V + + + L +
Sbjct: 219 VRIVVAIDPPGSSRPGADACGIVAAGRSAAGDYYVLEDVSSDRLSPAAWAARAIALYHRL 278
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLE 425
DAII + N G L + ++ R E + + +
Sbjct: 279 EADAIIAEVNMGGEMVRAVLHETD---AAIPVREVRASRGKF--VRAEPVAALYEQGRVR 333
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
L+++ TG + S S D D L++
Sbjct: 334 HVGCFP---LLEDEMC----DFAPTG---LSS-----GHSPDRLDALVWA 368
>gi|291457608|ref|ZP_06596998.1| putative phage terminase, large subunit [Bifidobacterium breve DSM
20213]
gi|291380661|gb|EFE88179.1| putative phage terminase, large subunit [Bifidobacterium breve DSM
20213]
Length = 537
Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/400 (13%), Positives = 111/400 (27%), Gaps = 60/400 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR------- 105
WQ + H L + + + K + R GKTTL L W +
Sbjct: 56 PWQQWLL----VHALELLEDGSYRFRKVIVLVARQNGKTTLMGVLAAWWLFVDSNKHPDR 111
Query: 106 -PGISVICL--ANSETQLKTTLWAEVSKWLSLLPNKHW---FEMQSLSLHPAPWYSDVLH 159
P + + + A + K + +V +W + P+ + L+ + +
Sbjct: 112 VPPVKFLVVGAAQTLDNAK-GPYNQVKEWCNPQPSTDEEADLVIPDLAAMTQKFVNTNGE 170
Query: 160 CSL--GIDSKHYSTMCRTYSEERPDT--FVGHHNTYGMAIINDEASGTPDVINLGILG-- 213
++ +++ + + F + N + T V + + G
Sbjct: 171 EAIITRSKARYIVRADKNIRAKSAARVVFDELREQHNDDGWNAVSQTTKAVWSSQLWGIS 230
Query: 214 --------------------------FLTERNANRFWIMTSNPRRLSGKFYEIFNK--PL 245
+ + G F P+
Sbjct: 231 NAGDYRSVALRKQVDKGRKLVDEWTRLSADGGNPADVFTSGEQDGSFGYFEWSAPDKCPV 290
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
DD + ++ + G+ R EV Q+ DI FI +
Sbjct: 291 DDADAIRHANPSLGYGPMTVMSVRSDIDGMTEAAFRTEVLCQWVTADIIPFIGPKMWASG 350
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE---HLFDWSKTDLRTTNNKISG 362
++ +++ D + T V G + H+ ++ D
Sbjct: 351 IDSRSTIPDGNRVVLSVDTS--ADRKTTYVAAAGIRADGLPHVELIARRDGMLWVPHYLD 408
Query: 363 LVEKYRPDAIIIDANNTGARTCDY---LEMLGYHVYRVLG 399
L+++ P I G D+ L G+ V+ + G
Sbjct: 409 LLQERWPHITEIAVQGKGCPAVDFIDPLTEKGWTVHLIEG 448
>gi|126725398|ref|ZP_01741240.1| Putative large terminase [Rhodobacterales bacterium HTCC2150]
gi|126704602|gb|EBA03693.1| Putative large terminase [Rhodobacterales bacterium HTCC2150]
Length = 420
Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/417 (13%), Positives = 112/417 (26%), Gaps = 66/417 (15%)
Query: 84 AGRGIGKTTLNAWLV------LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V V + + Q + + S L+ P
Sbjct: 31 GGRGAGKTRAGAEWVRSEVEGATATCEGRSKRVALVGETIDQAREVMVFGESGILACCPP 90
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
E Q+ T A
Sbjct: 91 DRRPEWQAGRKRL------------------VWPNGATAQIFSAHDPESLRGPQFDAAWV 132
Query: 198 DEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + + + L R+A R + T+ PR ++ + K
Sbjct: 133 DELAKWKRAEEAWDQLQFGLRLRDAPRQIV-TTTPRNVA--VLKDLMKQETTVVTSAPTK 189
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ SF E I ++ + + R E+ G+ + + +++E R +
Sbjct: 190 ANRAYLAASFLEDIHRKFA-GTRLGRQELEGELVEDAEGAMWTSSMLE--AGRIDEFPEF 246
Query: 316 APLIMGCDI---AEEGGDNTVVVLR--------RGPVIEHLFDWSKTDLRT-TNNKISGL 363
+++ D A D +V+ + + D S + +
Sbjct: 247 DRIVVAVDPPVTATSNSDLCGIVVVGACLQGPPQSWQAYVIEDCSIKGTPNKWADAVIEA 306
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
+++ D I+ + N G L V + R E + +
Sbjct: 307 WQRHNADRIVAEVNQGGDLIETLLRQKAVLVPYRAVRASRSKSS-----RAEPVAALYE- 360
Query: 424 LEFASLINHSGL--IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + L +++ + G + G S D D L++ +
Sbjct: 361 --QGRVHHGRDLGPLEDQMCQ----MTTRGFI--------GKGSPDRVDALVWALTD 403
>gi|299534276|ref|ZP_07047625.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
S44]
gi|298717734|gb|EFI58742.1| phage terminase, large subunit, PBSX family [Comamonas testosteroni
S44]
Length = 436
Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 41/335 (12%), Positives = 85/335 (25%), Gaps = 24/335 (7%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ +++ PG S L++ EV K LS +K E
Sbjct: 26 GGRGSGKSHFFGEMLIEDCLYEPGASG------GEGLRSVCIREVQKDLSQS-SKALLEG 78
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ +L+ ++ + + + ++ D+ +EA
Sbjct: 79 KLSALNLGSADGFRVYKDVITTPGDGLIIFKGMNDYTADSVKSLEGFKRAWW--EEAQTA 136
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + ++ + Q + R
Sbjct: 137 TQRSLDLLRPTMRAPGSQLWFGWNPRFAMDPVDRMLRAAELPTGALVVQANWRDNPWFPA 196
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP---DPYAPLIM 320
+ + D G + + ++ + DP L
Sbjct: 197 ELEQERLDCLRQQPDKYDHIWEGGYETVNEGAYFAKQLTAAKAEGRLGVVAADPSMRLRA 256
Query: 321 GCDIAEEGGDNTVVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII-- 374
DI G + + G + L + + Y+ D + I
Sbjct: 257 YVDIGGTGRNADSFAMWIVQFVGLQVRVLDYYEAQGQPMATHVQWLHDRGYKSDRLDIWL 316
Query: 375 DANNTGARTC------DYLEMLGYHVYRVLGQKRA 403
+ + L LGY V + Q +
Sbjct: 317 PHDGDRSDVVFAVTPASELRRLGYTVTTIPNQGKG 351
>gi|228966905|ref|ZP_04127946.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228792800|gb|EEM40361.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
thuringiensis serovar sotto str. T04001]
Length = 555
Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/349 (12%), Positives = 93/349 (26%), Gaps = 38/349 (10%)
Query: 9 PETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + F ++ +++ F+ P KG + P WQ + +
Sbjct: 32 KKQGTEEFPYIFDEDLAHRPIKFIEKFCRP--SKGNFKQLILQP--WQHFVLGSLFGWVH 87
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLW 125
+ + GR GKTT+ + + + +S G + LANS Q + L+
Sbjct: 88 KETRLRRFKEGLIFV--GRKNGKTTIISGVANYGVSKDGEKGADIPLLANSMKQAR-LLF 144
Query: 126 AEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
E + P + P SD Y
Sbjct: 145 DESKAMIKASPLLKKHFRTLRDAIHYDKTFSKIEPQASDSEKLDGLNTHIGIFDEIHEYK 204
Query: 178 EER----PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + G + + I G L ++
Sbjct: 205 DYKLISVIKNSRGARDQPLLIYITTAGYQLD--------GPLVNYYEQGTDVLNGVFDDD 256
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGID-----PSFHEGIIARYGLDSDV--TRVEVCG 286
++ +++ ++ + +D E S+ +
Sbjct: 257 RTFYFLAELDDPKEFEMPEMWVKANPNMDVSIKLSDMIEDWKKDKRTPSERNDFITKRFN 316
Query: 287 QFPQQDIDSFIPLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVV 334
F + SF+ II++ R+ I G D+++ +
Sbjct: 317 MFVNNNEQSFLDYEIIKKNNKVRDINDFTGKSCIGGFDLSDSEDFTSAC 365
>gi|125974959|ref|YP_001038869.1| PBSX family phage terminase large subunit [Clostridium thermocellum
ATCC 27405]
gi|125715184|gb|ABN53676.1| phage terminase, large subunit, PBSX family [Clostridium
thermocellum ATCC 27405]
Length = 418
Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/327 (11%), Positives = 89/327 (27%), Gaps = 18/327 (5%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG K++ + ++ + P + + L + +K +++ ++ + L ++E
Sbjct: 35 KGGRGSTKSSFVSIEIILGVMKDPNANAVALRKVKETIKDSVFEQLVWAIEKLKVTEYWE 94
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
++ + + G D + + +
Sbjct: 95 IKHNPMELTYLPTGQKILFRGADK-----------PRKIKSIKVSRGYVKFIWYEEVDEF 143
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTRTVE-- 259
I L T NP + D K TV
Sbjct: 144 LGMEEIRIINQSLMRGGEQFVVFYTYNPPNRVNAWVNEEILIDRPDRKVHHSTYLTVPRD 203
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ F ++ R E G+ + F ++ + + +
Sbjct: 204 WLGEQFFIEAEHLKKVNEKAYRHEYLGEVTGTGGEVF---TNVKARKINDEEIKAFDRIK 260
Query: 320 MGCDIAEEGGDNT-VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
G D +V + +N K++ L++K ++ A++
Sbjct: 261 RGLDFGYAVDPAAYIVCHFDKTRRRLYIFHEIFQVGLSNRKLAELIKKENKSNKLVVADS 320
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVD 405
++ L G ++ +V+
Sbjct: 321 AEPKSIAELRGYGINIRGAKKGPDSVE 347
>gi|296141561|ref|YP_003648804.1| terminase [Tsukamurella paurometabola DSM 20162]
gi|296029695|gb|ADG80465.1| Terminase [Tsukamurella paurometabola DSM 20162]
Length = 489
Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 70/422 (16%), Positives = 113/422 (26%), Gaps = 70/422 (16%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFK 79
S+ F F F KGT +G R WQ++ V
Sbjct: 19 RSEVESERFLAFADKFLRV-PKGTGAKGKLHLRDWQVDVARDVLD----------SGART 67
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
I RG GKTTLNA + L+ T G +V +A E Q ++ + + L
Sbjct: 68 VGIMFPRGQGKTTLNAAIALYRFFTGGEGANVCVVAVDERQA-GLAFSAARRMVELNEE- 125
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
A L + + P + + + D
Sbjct: 126 ----------LSARCQIFKDRLYLPTTDSVFQCL--------PASPTALEGLDYVLALVD 167
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKPLDD----WKR 250
EA + + +R + + + L + + + DD W+
Sbjct: 168 EAGVVNRDVFEVVQLAQGKREKSVLVAIGTPGPNLDDQVLLSLRDYHLEHPDDASLRWRE 227
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLD----------------SDVTRVEVCGQFPQQDID 294
F +D + + D R QF
Sbjct: 228 FSAAGFEDHPVDCTHCWELANPALDDFLHRDALVALLPPKTRESTFRRARLCQFAADTEG 287
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG-----PVIEHLFDWS 349
SF+P + E EP P A +++ D D T ++L +++
Sbjct: 288 SFLPAGVWEGLSTGEPVPL-GAEVVIALD-GSFSDDTTALLLGTVAAAPHFHPLRVWERP 345
Query: 350 KTDLR------TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
+ N I Y+ II D T LE G V
Sbjct: 346 ADNDDWRVPVLEVENTIRQACRDYQVVEIIADPFRWTR-TLQVLEQEGLPVVEFPHSPSR 404
Query: 404 VD 405
+
Sbjct: 405 LT 406
>gi|239590013|ref|YP_002941860.1| gp2 [Mycobacterium phage Angel]
gi|238890545|gb|ACR77534.1| gp2 [Mycobacterium phage Angel]
Length = 478
Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/372 (15%), Positives = 98/372 (26%), Gaps = 55/372 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + L IS R +GKT L +V L PG++VI
Sbjct: 39 DRWQ----DGLGRLILALDGTGLYAADTSVISIPRQVGKTYLIGCIVFALALLTPGLTVI 94
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ K T + + + L N H + D Y
Sbjct: 95 WTAHRTKTAKETFGSMKAMCATPLVNAHVRNV----------------SDARGDEGIYLH 138
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ G ++ DEA D ++ + + + PR
Sbjct: 139 NGSRILFGARENGFGLGFAGVGILVLDEAQRLTDKAMDDLIPTMNTVENPLILLTGTPPR 198
Query: 232 RLSG-----------------------KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
+ P D + + +
Sbjct: 199 PTDSGEVFTMLRQDALDGESEGTLYVEFSADEGAHPDDRAQLRKANPSYPHRTSERAIRR 258
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA----PLIMGCDI 324
+ +S E G + D + ++ A R A P G D+
Sbjct: 259 MRKNLTEES--FLREAFGIW-----DKVVHRPVVTAARWRRLESTGPAAGVKPNGFGVDM 311
Query: 325 AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY-RPDAIIIDANNTGART 383
+ + V G W+ D I+ ++ R ++ID+ + A
Sbjct: 312 SHSRMVSVNAVWLDGDQAHTEEVWAGDDTDAAVAWIADAWKRAGRRTVVVIDSESPAASL 371
Query: 384 CDYLEMLGYHVY 395
LE G +VY
Sbjct: 372 VVDLENAGVNVY 383
>gi|109392289|ref|YP_655519.1| gp2 [Mycobacterium phage Halo]
gi|189043089|ref|YP_001936030.1| hypothetical protein BPs1_2 [Mycobacterium phage BPs]
gi|91980539|gb|ABE67259.1| terminase [Mycobacterium phage Halo]
gi|171909204|gb|ACB58161.1| hypothetical protein BPs1_2 [Mycobacterium phage BPs]
gi|255927846|gb|ACU41466.1| gp2 [Mycobacterium phage Hope]
Length = 478
Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/372 (15%), Positives = 98/372 (26%), Gaps = 55/372 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + L IS R +GKT L +V L PG++VI
Sbjct: 39 DRWQ----DGLGRLILALDGTGLYAADTSVISIPRQVGKTYLIGCIVFALALLTPGLTVI 94
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ K T + + + L N H + D Y
Sbjct: 95 WTAHRTKTAKETFGSMKAMCATPLVNAHVRNV----------------SDARGDEGIYLH 138
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ G ++ DEA D ++ + + + PR
Sbjct: 139 NGSRILFGARENGFGLGFAGVGILVLDEAQRLTDKAMDDLIPTMNTVENPLILLTGTPPR 198
Query: 232 RLSG-----------------------KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
+ P D + + +
Sbjct: 199 PTDSGEVFTMLRQDALDGESEGTLYVEFSADEGAHPDDRAQLRKANPSYPHRTSERAIRR 258
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA----PLIMGCDI 324
+ +S E G + D + ++ A R A P G D+
Sbjct: 259 MRKNLTEES--FLREAFGIW-----DKVVHRPVVTAARWRRLESTGPAAGVKPNGFGVDM 311
Query: 325 AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY-RPDAIIIDANNTGART 383
+ + V G W+ D I+ ++ R ++ID+ + A
Sbjct: 312 SHSRMVSVNAVWLDGDQAHTEEVWAGDDTDAAVAWIADAWKRAGRRTVVVIDSESPAASL 371
Query: 384 CDYLEMLGYHVY 395
LE G +VY
Sbjct: 372 VVDLENAGVNVY 383
>gi|318064508|gb|ADV36483.1| phage terminase large subunit [Edwardsiella phage eiDWF]
gi|318064606|gb|ADV36532.1| phage terminase large subunit [Edwardsiella phage eiMSLS]
Length = 460
Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/387 (14%), Positives = 111/387 (28%), Gaps = 43/387 (11%)
Query: 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL 101
P++ R+W+++ + H +N+ ++ +G G GKT A + L
Sbjct: 25 PAPVKKERKSRTWRIKTL----PHQRGLINDTTTKILGLC--SGFGGGKTWSAARKAVQL 78
Query: 102 MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
PG I + L ++ E+ K L+ K F Q
Sbjct: 79 AILNPGCDGIITEPTIPLLVKIMYPELEKALNEAGIKWKFNKQD---------------- 122
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER--- 218
I + + + + + DE T I + L R
Sbjct: 123 -KIYHCRIAGQMTRIICDSMENYTRLIGVNAAWCVCDEFDTTKPDIAMEAYRKLLGRLRT 181
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
R ++ S P + ++ D + + T + + + + A+Y +
Sbjct: 182 GNVRQMVIVSTPEGFRAMYQIFISEADDQKRLIKARTTDNHYLPQDYIDTLRAQY--PPE 239
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
+ + G+F + N N + + L++G D V V R
Sbjct: 240 LIEAYLNGEFVNLTGGAVY-RNFSRTLNNCDTVAEDDDTLMIGMDFNVGQMAGAVYVQRI 298
Query: 339 GPVIEHLF----DWSKTDLRTTNNKISGLVEKYRPD---AIIIDANNTGART-------C 384
+E + D + I + I D++ +T
Sbjct: 299 ADGVEEMHLVDEFCGLLDTDAMIDAIKERYPDHHARGLIEIFPDSSGKNRKTTNANTSDI 358
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRN 411
LE G+ V D N
Sbjct: 359 AMLEDAGFTVSYNSVNPAVRDRVNDVN 385
>gi|261317250|ref|ZP_05956447.1| phage DNA Packaging protein [Brucella pinnipedialis B2/94]
gi|265988289|ref|ZP_06100846.1| phage DNA Packaging protein [Brucella pinnipedialis M292/94/1]
gi|261296473|gb|EEX99969.1| phage DNA Packaging protein [Brucella pinnipedialis B2/94]
gi|264660486|gb|EEZ30747.1| phage DNA Packaging protein [Brucella pinnipedialis M292/94/1]
Length = 430
Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/445 (12%), Positives = 113/445 (25%), Gaps = 68/445 (15%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAI---SAGRGIGKTTLNAWLVLWLMSTRPG----- 107
+ + D + + + P + GRG GKT A V + P
Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWHVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76
Query: 108 -ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ + + + + S LS+ V
Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-------------------VRPRYEASRR 117
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFW 224
+ + + A DE + P + L + R
Sbjct: 118 RLIWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ T+ + + + F + I RY + + R E+
Sbjct: 178 VTTTP---RAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYA-GTRLGRQEL 233
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLRR--- 338
G+ ++ + + IE+ P P A +++ D + + D +V+
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVVAGIDA 291
Query: 339 --GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ + + L + DAI+ + N G L V
Sbjct: 292 EGVGHVLADESMTMAKPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPV 351
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMAD--WLEF-ASLINHSGLIQNLKSLKSFIVPNTGEL 453
+ + R E + + + +++ G
Sbjct: 352 LKRRASRGKW-----LRAEPVAALYEQGRVRHAGRFPA----LEDEMC----DFAPEG-- 396
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAE 478
+ S +S D D L++ E
Sbjct: 397 -LSS-----GRSPDRLDALVWALGE 415
>gi|62327097|ref|YP_223885.1| putative large subunit terminase [Lactobacillus phage phiJL-1]
gi|37930114|gb|AAP74512.1| putative large subunit terminase [Lactobacillus phage phiJL-1]
Length = 440
Score = 65.3 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/288 (13%), Positives = 86/288 (29%), Gaps = 14/288 (4%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
RG GK+ A V+ + P ++ + T K + +A + K + F+
Sbjct: 41 KGSRGSGKSYATAAKVIIDIMMYPYVNWLVTRQYATTQKDSTFATIRKVAHSMGVLDLFK 100
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
L + G+D T + + + + + +A
Sbjct: 101 FTKSPLEITYKQTGQKVFFRGMDDPLKITSIQPVTGFICRRW----CEEAYELKSLDA-- 154
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD--WKRFQIDTRTVEG 260
D + + G L + I + +E F+ + + +
Sbjct: 155 -FDTVEESMRGELPPGGFYQTVITFNPWSDRHWLKHEFFDDKTKRNHSRAITTTYKDNDH 213
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
++ + + + + + RV V G++ + F L + E P +
Sbjct: 214 LNADYVDSLKEMLVRNPNRARVAVLGEWGIAEGLVFDGLFEQRDFSYDEI---ANLPKSV 270
Query: 321 GCDIAEEGGDNTV--VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
G D + + + + I +++D TN L +
Sbjct: 271 GLDFGFKHDPTAGEFIAVDQDNRIVYIYDEFYKQHLLTNQIAQELAKH 318
>gi|310722310|ref|YP_003969134.1| terminase subunit [Aeromonas phage phiAS4]
gi|306021153|gb|ADM79688.1| terminase subunit [Aeromonas phage phiAS4]
Length = 612
Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/476 (14%), Positives = 130/476 (27%), Gaps = 86/476 (18%)
Query: 14 KLFDLMWSDE--IKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVN 71
K M ++ K F ++ + R +Q + + ++ + L + N
Sbjct: 91 KWTKEMLAERKRCKEDIVYFAENYCCIEHIDYGIIRVQL-RDYQKDMLRIMAGNRLMAAN 149
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
R +GKTT+ A + + +V LA+ + L +
Sbjct: 150 L------------SRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMSAEVLHRT-KQA 196
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L LLP+ P + S+ + + +
Sbjct: 197 LELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFS-------SSPDAVRGNS 238
Query: 192 GMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP----- 244
I DE + P + L I ++ + +MT+ P L +Y+I+
Sbjct: 239 FALIYIDEVAFIPNFNDAWLAIQPVISS-GRHSKILMTTTPNGL-NHWYDIWTAAITPNS 296
Query: 245 -----LDDWKRFQIDTRTVE---------------GIDPSFHEGIIARYGLDSDVTRVEV 284
+ + +V+ D + G + + E
Sbjct: 297 DGSGSKSGFVPYTATWSSVKERMYSDGSKTDGSDSYFDDGYSWSAKTIAGSSLEAFQQE- 355
Query: 285 CGQFPQQDIDSFIPLNIIEEALNRE----------PCPDPYAPLIMGCDIAEEGGDNTVV 334
Q + I + + +E P I D AE G +
Sbjct: 356 HNTAFQGTSGTLINGFKLSKMTWKEVPASDNFTMFKEPIEGHKYIATLDSAEGRGQD--Y 413
Query: 335 VLRRGPVIEH-------LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
I ++ + T + + + Y I I+ N TG L
Sbjct: 414 HAMHIYDITEFPYEQVAVYHSNTTSHLILPDVLLKYLNMYYQPYIYIELNATGVSIAKSL 473
Query: 388 -EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKS 441
L Y + + + + D +E L + H G I L++
Sbjct: 474 YSELEYENIICDSYNDLGMKQT-KRSKAIGCSTLKDLIEKEKLVLYHKGTIMELRT 528
>gi|296445235|ref|ZP_06887194.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
gi|296257190|gb|EFH04258.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
Length = 482
Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/400 (13%), Positives = 110/400 (27%), Gaps = 23/400 (5%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119
+ P V + GR GK+ A L ++ A E
Sbjct: 40 RPIFETLSGRAAEPQQRVEELWAIIGRRGGKSRAAAVLGAYVAGLCDWSEFR--APGERL 97
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
L + A V W ++ + + +L S+ ++
Sbjct: 98 LLPIMSATV--WQAVRIKNYLDGVFALPAFAEMVESNAAEAISLKSYVDIECRPASFRTS 155
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS-GKFY 238
R T +G + + + I + L I + + RR + +
Sbjct: 156 RGATLIGAIVDEVAFLRQEGTANPDREILNALRPGLATTAGMLVCISSPHARRGELYRAF 215
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ P D ++ + I + D+ V E GQF SF+
Sbjct: 216 RDHHGPAGDPAILVARASSLVMNPTLSPQVIRRAFERDAAVAAAEYGGQFRVDVE-SFVS 274
Query: 299 LNIIEEALNREPCPDP---YAPLIMGCDIAEEGGDNT--VVVLRRGPVIEHLFDWSKTDL 353
++E A+ + P + D + D + R I T
Sbjct: 275 REVVEAAVVADRFELPPCAGVKYVAFTDPSGGSSDAMTLAIAHRDSDKIIIDAIRVATPP 334
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ ++ + E R + + R + ++ + +
Sbjct: 335 FSPDSVTADFAETMRLYHVS-EVTGD---------RYAGEWPRERFRVHGIEYKLAEKPK 384
Query: 414 TELHVKMADWLEFAS--LINHSGLIQNLKSLKSFIVPNTG 451
++L+ L L++H LI+ L SL+
Sbjct: 385 SDLYRDALPQLNAGRVELLDHPKLIEQLCSLERRTARGGR 424
>gi|30263956|ref|NP_846333.1| prophage LambdaBa02, terminase, large subunit, putative [Bacillus
anthracis str. Ames]
gi|47778245|ref|YP_020739.2| prophage LambdaBa02, terminase, large subunit [Bacillus anthracis
str. 'Ames Ancestor']
gi|30258600|gb|AAP27819.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. Ames]
gi|47551950|gb|AAT33214.2| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. 'Ames Ancestor']
Length = 562
Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/371 (11%), Positives = 88/371 (23%), Gaps = 42/371 (11%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
+L E ++ +E ++ P + + WQ +
Sbjct: 37 NDLKRQGTEEFPW---IFDEEKAHRPIRYIEKFCRP---SKGDYKRLVL-QPWQHFVIGS 89
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQ 119
+ +G I GR GKTT+ + L + + PG V LAN++ Q
Sbjct: 90 LYGWIHKDTG--YRRFREGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQ 147
Query: 120 LKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
L+ E + P N+ P SD
Sbjct: 148 AGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFD 206
Query: 172 MCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFW 224
+ + G + I L
Sbjct: 207 EIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRK 266
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ + W + + + + + + + +
Sbjct: 267 FYFMAEMDSVDEIE-----NPELWIKANPNMGVSLDLPSLIDDW--NTDKHTDAEKNDWI 319
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVVV---LR 337
+ F D SF+ + I++ + + G D++ + + L
Sbjct: 320 TKQFNIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSATEDFTSACLEFPLD 379
Query: 338 RGPVIEHLFDW 348
G V W
Sbjct: 380 DGNVFVLSHSW 390
>gi|300896794|ref|ZP_07115296.1| conserved domain protein [Escherichia coli MS 198-1]
gi|300359365|gb|EFJ75235.1| conserved domain protein [Escherichia coli MS 198-1]
Length = 110
Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAI 455
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 9 FYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSATY 68
Query: 456 ESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 69 EASRSEEASHADLAWATMHALLNEPLTAGIST 100
>gi|254504019|ref|ZP_05116170.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11]
gi|222440090|gb|EEE46769.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11]
Length = 438
Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 53/414 (12%), Positives = 100/414 (24%), Gaps = 63/414 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMS----TRPG--ISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A + PG + + + ++ + VS L++ P
Sbjct: 55 GGRGAGKTRAGAEWIRARALGHGWCEPGFAGRIALVGETYADVREVMVEGVSGLLAVHPG 114
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ +
Sbjct: 115 GERPQWTPSRRRLE------------------WPNGAVAQTFSAEDPEALRGPQFDIAWC 156
Query: 198 DEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + + + L + R I T+ + K
Sbjct: 157 DELAKWTYAEETFDMLQFGLRLGSKPRQLITTTP---RPVPLLKRLMKQAGTAITHAPTK 213
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ P F E ++ RYG + + R E+ G+ + D+ + +E A P+
Sbjct: 214 ANALFLAPGFLEAVVGRYG-GTRLGRQELDGELIEDRPDALWSRDGLEAARVA-AAPEDL 271
Query: 316 APLIMGCDI---AEEGGDNTVVVL-----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
+++ D A D +V + GL
Sbjct: 272 TRIVIAIDPPVTATAKSDACGIVAAGLGSDGKAYVLADRSRRPAKPADWAEAAIGLWHGL 331
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD---WL 424
+ D +I + N G + V + R E + D
Sbjct: 332 KADCLIAEVNQGGDMVAQVIASADPSVPVKQVRA---TRGKFS--RAEPVAMLYDQGKVH 386
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + G G +S D D L++ ++
Sbjct: 387 HAGTFPELEDEMA--------DFGPGGL--------SGRRSPDRLDALVWAVSD 424
>gi|213162920|ref|ZP_03348630.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
Length = 113
Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 12/109 (11%)
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
I W D R + I L E+Y I ID+ G + ++ V +
Sbjct: 14 KFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFV 73
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
N + L +K D + L + + Q+ +++
Sbjct: 74 YNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRR 113
>gi|110680226|ref|YP_683233.1| hypothetical protein RD1_3034 [Roseobacter denitrificans OCh 114]
gi|109456342|gb|ABG32547.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 456
Score = 64.9 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/428 (12%), Positives = 107/428 (25%), Gaps = 71/428 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + V + + Q++ + S L+
Sbjct: 64 IMGGRGAGKTRAGAEWVRAQVEGARPLDEGRSRRVALVGETIEQVREVMIFGDSGILACS 123
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P ++ + G A
Sbjct: 124 PPDRRPVWEAGRKRL------------------VWPNGAIATIHSAFDPEGLRGPQFDAA 165
Query: 196 INDEASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE + + + R +T+ PR + + K
Sbjct: 166 WVDELAKWKKAQDTWDMLQFALRLGDKPQVCVTTTPRNVG--VLKTLMKSPSTVSSHAPT 223
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ SF E + ARY + + R E+ G + + IE P
Sbjct: 224 EANAANLARSFLEEVRARYA-GTRLGRQELDGVLLEDAEGALWTTAGIE---GIRCEQAP 279
Query: 315 Y-APLIMGCDIAEE---GGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKI 360
+++ D + D +++ +
Sbjct: 280 ELDRIVVAVDPSTTSGANSDECGIIVAGVKMAGAPQDWRAYVLADCTVQGASPAGWAQAA 339
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+E++ D ++ + N G + L + V + R E +
Sbjct: 340 IAAMERFGADRLVAEVNQGGQMVAEVLRQVDPLVPYKGVHASRGKVA-----RAEPVAAL 394
Query: 421 ADWLEFASLINHSGL--IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT--- 475
+ + + L +++ + ++ +G S D D L++
Sbjct: 395 YE---QGRVRHLRDLGALEDQMC----------RMTVQG--YEGQGSPDRVDALVWALHE 439
Query: 476 -FAENPPR 482
E +
Sbjct: 440 LMIEPVAK 447
>gi|224542959|ref|ZP_03683498.1| hypothetical protein CATMIT_02153 [Catenibacterium mitsuokai DSM
15897]
gi|224524097|gb|EEF93202.1| hypothetical protein CATMIT_02153 [Catenibacterium mitsuokai DSM
15897]
Length = 479
Score = 64.5 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/369 (14%), Positives = 107/369 (28%), Gaps = 36/369 (9%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ M + A + + R GK+ + LW + G ++
Sbjct: 38 MEWQEIQMMDIMAVDDDGQWVHIKYGYSI----PRRNGKSEILVMRELWGLL--HGEKIL 91
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ T W ++ + L + + + G+++
Sbjct: 92 HTAH-RTTTSHASWEKLKQMLDENDYTEVKRADKEKTYEKSYTATAQ---FGLETIKILD 147
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ R + G +I DEA + + +T + + + P
Sbjct: 148 DGGGSASFRTRSSKGGLGEGFDLLIVDEAQEYTEDQQSALQYVVTSSENPQTLMCGTPPT 207
Query: 232 RLS------GKFYEIFNKPLD-----DWKRFQ--------IDTRTVEGIDPSFHEG-IIA 271
+S E + D +W I T + + E + A
Sbjct: 208 AVSSGTVFVNLRKECLSGGSDTSGWAEWSVEHMSDVKDRDIWYETNPSLGQTLKERSVAA 267
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
D ++ G + Q + S I N AL E P+ PL +G I +
Sbjct: 268 EDSSDEIDFNIQRFGLWLQYNQKSAISENEW-NALKVETIPEFKGPLFVG--IKYGHDGS 324
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V + ++ + +R N I + K A+ +D N + L+
Sbjct: 325 NVSMSIAVKTKNDNILVDVIGCRPIRKGNGWIVDFLRKADIAAVTVDGANGQQMLINELK 384
Query: 389 MLGYHVYRV 397
G + +
Sbjct: 385 EAGIKLKMI 393
>gi|84517307|ref|ZP_01004661.1| putative large terminase [Loktanella vestfoldensis SKA53]
gi|84508787|gb|EAQ05250.1| putative large terminase [Loktanella vestfoldensis SKA53]
Length = 426
Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/411 (12%), Positives = 106/411 (25%), Gaps = 62/411 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I GRG GKT A + M + + + Q + + S +++ P
Sbjct: 41 ILGGRGAGKTRAGAEW-VRRMVASGARRIAVVGETYHQAREVMVFGDSGIMAVCPPDARP 99
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + W + + A DE +
Sbjct: 100 KWIATR-QMLVWPNGAQ-----------------ATLFSAQDPEALRGPQFDAAWVDELA 141
Query: 202 GTPDV--INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
+ L +A R + T+ PRR + +
Sbjct: 142 KWRKAAATWDMLQFGLRLGDAPRVCV-TTTPRRQA--LLRKLLDRPSTVVTHAPTSANRA 198
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ SF + A Y + + R E+ G + + + P ++
Sbjct: 199 NLADSFLAEMTAEYA-GTALGRQELEGVMLDDVDGALWQMGALAACQVDRAP--PLTRIV 255
Query: 320 MGCDI---AEEGGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
+ D A G D +++ + T G + +
Sbjct: 256 VAIDPPTTAHAGSDACGIIVAGVVMAGPVQDWRAYVLEDASLQGASPDTWARAAIGAMAR 315
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF 426
+ D ++ + N G + + V + R E + +
Sbjct: 316 HNADRLVAEVNQGGDMVAAVIRQIDPLVPLRAVHASRGKIA-----RAEPVAALYE---Q 367
Query: 427 ASLINHSGL--IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + GL +++ + G +G S D D L++
Sbjct: 368 GRVRHLRGLGDLEDQMCQ----MTGAGY--------QGRGSPDRVDALVWA 406
>gi|109290130|ref|YP_656379.1| gp17 terminase subunit [Aeromonas phage 25]
gi|104345803|gb|ABF72703.1| gp17 terminase subunit [Aeromonas phage 25]
Length = 612
Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 67/475 (14%), Positives = 129/475 (27%), Gaps = 84/475 (17%)
Query: 14 KLFDLMWSDE--IKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVN 71
K M ++ K F ++ + R +Q + + ++ + L + N
Sbjct: 91 KWTKEMLAERKRCKEDIVYFAENYCCIEHIDYGIIRVQL-RDYQKDMLRIMAGNRLMAAN 149
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
R +GKTT+ A + + +V LA+ + L +
Sbjct: 150 L------------SRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASMSAEVLHRT-KQA 196
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
L LLP+ P + S+ + + +
Sbjct: 197 LELLPD-----------FLQPGIVEWNKGSITLGNGCAIGAFS-------SSPDAVRGNS 238
Query: 192 GMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF------NK 243
I DE + P + L I ++ + +MT+ P L +Y+I+ N
Sbjct: 239 FALIYIDEVAFIPNFNDAWLAIQPVISS-GRHSKILMTTTPNGL-NHWYDIWTAAITPNS 296
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ------------ 291
K + ++ + ++ GQ Q
Sbjct: 297 DGSGSKSGFVPYTATWSSVKERMYSDGSKTDGAIHILTTDILGQPRQSPVLALRAFQQEH 356
Query: 292 ------DIDSFIPLNIIEEALNRE----------PCPDPYAPLIMGCDIAEEGGDNTVVV 335
+ I + + +E P I D AE G +
Sbjct: 357 NTAFQGTSGTLINGFKLSKMTWKEVPASDNFTMFKEPIEGHKYIATLDSAEGRGQD--YH 414
Query: 336 LRRGPVIEH-------LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL- 387
I ++ + T + + + Y I I+ N TG L
Sbjct: 415 AMHIYDITEFPYEQVAVYHSNTTSHLILPDVLLKYLNMYYQPYIYIELNATGVSIAKSLY 474
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL-INHSGLIQNLKS 441
L Y + + + + D +E L + H G I L++
Sbjct: 475 SELEYENIICDSYNDLGMKQT-KRSKAIGCSTLKDLIEKEKLVLYHKGTIMELRT 528
>gi|262279834|ref|ZP_06057619.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262260185|gb|EEY78918.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 416
Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 58/431 (13%), Positives = 111/431 (25%), Gaps = 67/431 (15%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISV------ICLANSETQLKTTLWAEVSKWLSLLPNK 138
GR GKT L + +V A + Q K W + + +
Sbjct: 16 GRRFGKTFLAKAEMRRAARLAAKWNVSVEDEIWYAAPTFKQAKRVFWKRLKQAIPASWRA 75
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
S+ D + + +I D
Sbjct: 76 GKPNETECSITLR--------------------SGHVIRVVGLDNYDDLRGSGLFFLIID 115
Query: 199 EASGTP-DVINLGILGFLTE--------RNANRFWIMTSNPRRLSGKFYEIFNKPLDDW- 248
E + + L+ + + P+ Y+ F
Sbjct: 116 EWADCKWAAWEEVLRPMLSTCKYVVNGVQRVGGHVLRIGTPKG-FNHCYDTFMDGQPGHE 174
Query: 249 -KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
+++G + E I+A+ +D E F F N + A
Sbjct: 175 PDCKSFSYTSLQGGNIPESEIIVAKRKMDPKTFSQEYEASFESYQGVIFYCFNRLLSAS- 233
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
L +G D VV +RRG + + ++ +L T I + E+Y
Sbjct: 234 -TETVQANDVLHVGMDFNVTKM-AAVVYVRRGEQMHAVDEFV--NLFDTPAMIEAIQERY 289
Query: 368 RPDAIII--DANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
I + DA+ ++ L G+ V D N R L
Sbjct: 290 PDHEIAVYPDASGENRKSSNASETDLALLRKAGFKVLVNSRNPAVKDRINSMNSR--LCN 347
Query: 419 KMADW---LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+++ + + + L+ I + G+ + G + +
Sbjct: 348 TLSERRLFVNVTKCPHFAK------CLERQIYDDYGQ----PDKKSGFDHMNDAGTYPIA 397
Query: 476 FAENPPRSDMD 486
+ + M
Sbjct: 398 YLFPIDKKSMG 408
>gi|228987452|ref|ZP_04147571.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228772184|gb|EEM20631.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 562
Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/371 (11%), Positives = 88/371 (23%), Gaps = 42/371 (11%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
+L E ++ +E ++ P + + WQ +
Sbjct: 37 NDLKRQGTEEFPW---IFDEEKAHRPIRYIEKFCRP---SKGDYKRLVL-QPWQHFVIGS 89
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQ 119
+ +G I GR GKTT+ + L + + PG V LAN++ Q
Sbjct: 90 LYGWIHKDTG--YRRFREGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQ 147
Query: 120 LKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
L+ E + P N+ P SD
Sbjct: 148 AGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFD 206
Query: 172 MCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFW 224
+ + G + I L
Sbjct: 207 EIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRK 266
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ + W + + + + + + + +
Sbjct: 267 FYFMAEMDNVDEIE-----NPELWIKANPNMGVSLDLPSLIDDW--NTDKHTDAEKNDWI 319
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVVV---LR 337
+ F D SF+ + I++ + + G D++ + + L
Sbjct: 320 TKQFNIFVDNDEMSFVGIEILKRNEGVIDIKGLAGKECVAGYDLSATEDFTSACLEFPLD 379
Query: 338 RGPVIEHLFDW 348
G V W
Sbjct: 380 DGNVFVLSHSW 390
>gi|84503393|ref|ZP_01001462.1| Putative large terminase [Oceanicola batsensis HTCC2597]
gi|84388303|gb|EAQ01254.1| Putative large terminase [Oceanicola batsensis HTCC2597]
Length = 460
Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/423 (11%), Positives = 94/423 (22%), Gaps = 63/423 (14%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + + + + Q++ + S ++
Sbjct: 68 ILGGRGAGKTRAGAEWVRAQVEGDRPLDKGRCKRIALVGETIDQVREVMIFGDSGIMACS 127
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P E ++ G
Sbjct: 128 PPDRRPEWEATRKRL------------------VWPNGAVAYAFSAHEPEGLRGPQFDGA 169
Query: 196 INDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + L +A R + T+ R G ++ D
Sbjct: 170 WADELGKWRRGRDSWDMLQFALRLGDAPRVCVTTTP--RNVGVLKDLLEM--DSTVTTHA 225
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
T + + + R E+ G + ++E R P
Sbjct: 226 PTEANRANLADSFLAEVRARYAGTGLGRQELDGVMLDAAEGALWTPAMLE--AGRVEAPP 283
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKI 360
+++ D G D +V+ +
Sbjct: 284 DLDRIVVAVDPPVTGHAGSDECGIVVAGIVSRGDPGDWKAYVLEDATVHAATPVQWAEAA 343
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ ++ D I+ + N G + + V R E +
Sbjct: 344 IAALHRHGGDRIVAEVNQGGDLVEAVMRQVDPLVPLKKVHAARGKAA-----RAEPVAAL 398
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENP 480
+ L L L ++ G S D D L++ E
Sbjct: 399 YEQGRVHHLRGLGALEDQLCAMTMRGYEGKG-------------SPDRLDALVWALTELV 445
Query: 481 PRS 483
+
Sbjct: 446 IEA 448
>gi|317483571|ref|ZP_07942553.1| phage terminase [Bifidobacterium sp. 12_1_47BFAA]
gi|316914997|gb|EFV36437.1| phage terminase [Bifidobacterium sp. 12_1_47BFAA]
Length = 487
Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 53/465 (11%), Positives = 115/465 (24%), Gaps = 57/465 (12%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + ++ + + +I R GKT + LV+ L + P ++VI
Sbjct: 42 DRWQQGLLTLILGRRADGTFAASVGGVVLSI--CRQTGKTFTVSSLVVILCTLIPNLTVI 99
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ + V + + + + +
Sbjct: 100 WTAHHNRTNSN-TFDHVRTLVRNPALIGYLDHSGRTDGVRGGNGMQEITFANGSKILFGA 158
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ ++ I+ DEA + ++ T + N + P
Sbjct: 159 RAQGFARGN---------DAVDIIVFDEAQILTEQAISDMVPA-TNTSPNALVLYIGTPP 208
Query: 232 RLSGKFYEIFNKPLD-----------------------DWKRFQIDTRTVEGIDPSFHEG 268
R + + + + + +
Sbjct: 209 RPADPGEAFTERRRQALAGEDDMLYVEFSADRDADSDDRAQWRKANPSFPRRTSETSMLR 268
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEG 328
+ + G DS R E G + + + I +A P +
Sbjct: 269 MQRQLGKDS--FRREALGIWDETATNRAINPEQWTKAATGTPNIKGLIGYALDMKPDRSS 326
Query: 329 GD-NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY-RPDAIIIDANNTGARTCDY 386
V R G L + T + T + + + + R +++ID+ +
Sbjct: 327 LAIGGAVNHRDGTAHIELRRFESTQSKGTQWAVDYIADHWPRTASVVIDSQSPAMSLLAD 386
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL--INHSG---LIQNLKS 441
L+ V K D L L + L + +
Sbjct: 387 LKARHVKVIVTNYSDMG-----------RACGKFLDMLRDGKLTHLPDDKAPALATAVAN 435
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
+ + +G + S + L + + D D
Sbjct: 436 ATTRSIGKSGAVGWNPMGSDIDISPLVACTLAL-YGTTITKRDPD 479
>gi|49186804|ref|YP_030056.1| prophage LambdaBa02, terminase, large subunit [Bacillus anthracis
str. Sterne]
gi|165872202|ref|ZP_02216841.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0488]
gi|167633590|ref|ZP_02391914.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0442]
gi|167640991|ref|ZP_02399248.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0193]
gi|170688734|ref|ZP_02879938.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0465]
gi|170705897|ref|ZP_02896360.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0389]
gi|177654326|ref|ZP_02936255.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0174]
gi|190565905|ref|ZP_03018824.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis Tsiankovskii-I]
gi|227813137|ref|YP_002813146.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. CDC 684]
gi|229600357|ref|YP_002868188.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0248]
gi|254683650|ref|ZP_05147510.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. CNEVA-9066]
gi|254721486|ref|ZP_05183275.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A1055]
gi|254735994|ref|ZP_05193700.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. Western North America USA6153]
gi|254743886|ref|ZP_05201569.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. Kruger B]
gi|254754336|ref|ZP_05206371.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. Vollum]
gi|254757972|ref|ZP_05209999.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. Australia 94]
gi|49180731|gb|AAT56107.1| prophage LambdaBa02, terminase, large subunit, putative [Bacillus
anthracis str. Sterne]
gi|164712149|gb|EDR17687.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0488]
gi|167511041|gb|EDR86430.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0193]
gi|167530996|gb|EDR93683.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0442]
gi|170129437|gb|EDS98301.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0389]
gi|170667250|gb|EDT18009.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0465]
gi|172080816|gb|EDT65897.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0174]
gi|190562824|gb|EDV16790.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis Tsiankovskii-I]
gi|227005131|gb|ACP14874.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. CDC 684]
gi|229264765|gb|ACQ46402.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
anthracis str. A0248]
Length = 590
Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/371 (11%), Positives = 88/371 (23%), Gaps = 42/371 (11%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
+L E ++ +E ++ P + + WQ +
Sbjct: 65 NDLKRQGTEEFPW---IFDEEKAHRPIRYIEKFCRP---SKGDYKRLVL-QPWQHFVIGS 117
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQ 119
+ +G I GR GKTT+ + L + + PG V LAN++ Q
Sbjct: 118 LYGWIHKDTG--YRRFREGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQ 175
Query: 120 LKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
L+ E + P N+ P SD
Sbjct: 176 AGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFD 234
Query: 172 MCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFW 224
+ + G + I L
Sbjct: 235 EIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRK 294
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ + W + + + + + + + +
Sbjct: 295 FYFMAEMDSVDEIE-----NPELWIKANPNMGVSLDLPSLIDDW--NTDKHTDAEKNDWI 347
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVVV---LR 337
+ F D SF+ + I++ + + G D++ + + L
Sbjct: 348 TKQFNIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSATEDFTSACLEFPLD 407
Query: 338 RGPVIEHLFDW 348
G V W
Sbjct: 408 DGNVFVLSHSW 418
>gi|65321283|ref|ZP_00394242.1| COG4626: Phage terminase-like protein, large subunit [Bacillus
anthracis str. A2012]
Length = 591
Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/371 (11%), Positives = 88/371 (23%), Gaps = 42/371 (11%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
+L E ++ +E ++ P + + WQ +
Sbjct: 66 NDLKRQGTEEFPW---IFDEEKAHRPIRYIEKFCRP---SKGDYKRLVL-QPWQHFVIGS 118
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQ 119
+ +G I GR GKTT+ + L + + PG V LAN++ Q
Sbjct: 119 LYGWIHKDTG--YRRFREGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQ 176
Query: 120 LKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
L+ E + P N+ P SD
Sbjct: 177 AGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFD 235
Query: 172 MCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFW 224
+ + G + I L
Sbjct: 236 EIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRK 295
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ + W + + + + + + + +
Sbjct: 296 FYFMAEMDSVDEIE-----NPELWIKANPNMGVSLDLPSLIDDW--NTDKHTDAEKNDWI 348
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVVV---LR 337
+ F D SF+ + I++ + + G D++ + + L
Sbjct: 349 TKQFNIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSATEDFTSACLEFPLD 408
Query: 338 RGPVIEHLFDW 348
G V W
Sbjct: 409 DGNVFVLSHSW 419
>gi|324116131|gb|EGC10055.1| gpp [Escherichia coli E1167]
Length = 109
Score = 64.5 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAI 455
A D+ + +T + +K D + L + + + +++ + +
Sbjct: 8 FYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSATY 67
Query: 456 ESKRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
E+ R + A D + M+ P + +
Sbjct: 68 EASRSEEASHADLAWATMHALLNEPLTAGIST 99
>gi|307252059|ref|ZP_07533958.1| Phage terminase, large subunit, PBSX family [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306860359|gb|EFM92373.1| Phage terminase, large subunit, PBSX family [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 407
Score = 64.2 bits (154), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/301 (13%), Positives = 82/301 (27%), Gaps = 28/301 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG KT A + R ++C L+ + EV + +
Sbjct: 27 GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAIR------ 80
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
S S + Y ++ + + + +E
Sbjct: 81 -----STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARI-----LLAWVEE 130
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A +V + + E N+ W+ + +R S ++ K +++
Sbjct: 131 AETVSEVAWQKLEPTVREHNSE-IWVTWNPEKRGSATDLRFRRHVPENAKIIEMNYSDNP 189
Query: 260 GIDPSFHEGIIARYGL-DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ +A D R G + +Q E EP PD P
Sbjct: 190 WFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQEL--EFEPNPDFDGPY 247
Query: 319 IMGCDIAEEGGDNTVV--VLRRGPVIEHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIID 375
G D + + G + + +L T + IS + ++ D
Sbjct: 248 Y-GLDFGFANDPTAAIKCWVFDGDLYIEYEAGQVRLELDETASFISERIPEFEKYISRAD 306
Query: 376 A 376
+
Sbjct: 307 S 307
>gi|303251622|ref|ZP_07337796.1| hypothetical protein APP6_0825 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302649620|gb|EFL79802.1| hypothetical protein APP6_0825 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 409
Score = 64.2 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/301 (13%), Positives = 82/301 (27%), Gaps = 28/301 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG KT A + R ++C L+ + EV + +
Sbjct: 29 GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAIR------ 82
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
S S + Y ++ + + + +E
Sbjct: 83 -----STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARI-----LLAWVEE 132
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A +V + + E N+ W+ + +R S ++ K +++
Sbjct: 133 AETVSEVAWQKLEPTVREHNSE-IWVTWNPEKRGSATDLRFRRHVPENAKIIEMNYSDNP 191
Query: 260 GIDPSFHEGIIARYGL-DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ +A D R G + +Q E EP PD P
Sbjct: 192 WFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQEL--EFEPNPDFDGPY 249
Query: 319 IMGCDIAEEGGDNTVV--VLRRGPVIEHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIID 375
G D + + G + + +L T + IS + ++ D
Sbjct: 250 Y-GLDFGFANDPTAAIKCWVFDGDLYIEYEAGQVRLELDETASFISERIPEFEKYISRAD 308
Query: 376 A 376
+
Sbjct: 309 S 309
>gi|221199508|ref|ZP_03572552.1| phage terminase, large subunit, pbsx family [Burkholderia
multivorans CGD2M]
gi|221205590|ref|ZP_03578605.1| phage terminase, large subunit, pbsx family [Burkholderia
multivorans CGD2]
gi|221174428|gb|EEE06860.1| phage terminase, large subunit, pbsx family [Burkholderia
multivorans CGD2]
gi|221180793|gb|EEE13196.1| phage terminase, large subunit, pbsx family [Burkholderia
multivorans CGD2M]
Length = 425
Score = 64.2 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 41/338 (12%), Positives = 97/338 (28%), Gaps = 35/338 (10%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P+ ++ GRG GKT A +L T+ + V+C + +K +++A + +
Sbjct: 13 PQWRFISVRGGRGSGKTVNFARALLIRA-TQKPLRVLCTREVQDSIKESVYATLVSEMKK 71
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ + F++ S + P + + + +
Sbjct: 72 MGLESHFDVLSNEIRP------------KLGGAFIFRGLSDMTADNVKSLA-----DIDI 114
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-KPLDDWKRFQI 253
+EA + + + + + + NP + Y+ + L + +
Sbjct: 115 AWVEEAQTITENSFRKLTPSIRAPGSQIWL--SWNPELETDFIYQKVVIEGLPNCASLFV 172
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ G D D+ R G + I +
Sbjct: 173 NFDQNPWFPDELRLEEQDMKGKDPDMHRHVWLGMPLPAVAGAIYFNEISQMESEGRLLNI 232
Query: 314 P-----YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK-- 366
P +IM + V + I F+ + L + + +
Sbjct: 233 PIDDGLNTYIIMDLGFNDFTSCPVVQQVGGEFRIVDFFENRRKPLSWFSEQFIEAGYEGA 292
Query: 367 -----YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
+ + +D++ + ++ LG+ V V
Sbjct: 293 IVVMPHDAEHERLDSDGVSMKA--KMQALGWEVEIVAN 328
>gi|56419063|ref|YP_146381.1| phage-terminase large subunit [Geobacillus kaustophilus HTA426]
gi|56378905|dbj|BAD74813.1| phage-terminase large subunit [Geobacillus kaustophilus HTA426]
Length = 571
Score = 64.2 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 43/352 (12%), Positives = 85/352 (24%), Gaps = 35/352 (9%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
+L E ++ +E F+ F ++WQ + +
Sbjct: 46 NDLKRQGTKEFPW---IFDEEKGHRPIKFIETFC---RPSKGNFQSLVAQAWQHFIIGSL 99
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQL 120
+G + GR GK+T+ + L + S G V LANS Q
Sbjct: 100 YGWVHKDTG--LRRFKEGLVFVGRKNGKSTMVSGLANYGCSKDGEKGADVYLLANSMKQA 157
Query: 121 KTTLWAEVSKWL--------SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+ ++ E K + + P SD
Sbjct: 158 R-VIFEECQKMIWSSHLLFKHFRVLRDAIHYDKTFSKIEPQASDSEKLDGLNAHLAIFDE 216
Query: 173 CRTYSEER----PDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFWI 225
Y + + G + I L +
Sbjct: 217 IHEYKDYKLINVIKNSTGARRQPLILYITTAGYQLDGPLVDYYSKAADVLDGVIEDERSF 276
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI--IARYGLDSDVTRVE 283
+ +W + + +D + E + + +
Sbjct: 277 YFIAEVDEGDDIED-----PKNWIKANPNIGVTLDLD-TLIEEWNARKHIPAERNDFITK 330
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVV 334
F + D SF+ +I+ + P I G D+++ +
Sbjct: 331 RLNVFVKSDEQSFLDYEVIKRNDKTIDIEKLVGMPCIGGFDLSQTEDFTSAC 382
>gi|19746414|ref|NP_607550.1| hypothetical protein spyM18_1474 [Streptococcus pyogenes MGAS8232]
gi|19748615|gb|AAL98049.1| conserved hypothetical phage protein [Streptococcus pyogenes
MGAS8232]
Length = 471
Score = 64.2 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 48/365 (13%), Positives = 100/365 (27%), Gaps = 49/365 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ + + A N + + R GKT + + LW + G+ ++
Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + D + +
Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVDG--------------EDFISNKAKGQERIEFKA 141
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ R T G +I DEA + +T+ + + + P
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTM 201
Query: 233 LSG-----KFYEIFNKPLDDWKRF---------QIDTRTVEGIDPSFH------EGIIAR 272
+S + + K + + +I+ + I I A
Sbjct: 202 VSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEAE 261
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G +P + S I + + + P + I N
Sbjct: 262 LGEDEIDHNIQRLGYWPSFNQKSVISEKEWAKLKVEQVPELKSK----LFVGIKFGQDGN 317
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V + R + +R I ++ ++ID + L+
Sbjct: 318 NVSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDGASGQELLAQELK 377
Query: 389 MLGYH 393
G
Sbjct: 378 DQGLK 382
>gi|190893406|ref|YP_001979948.1| hypothetical protein RHECIAT_CH0003832 [Rhizobium etli CIAT 652]
gi|190698685|gb|ACE92770.1| hypothetical protein RHECIAT_CH0003832 [Rhizobium etli CIAT 652]
Length = 443
Score = 64.2 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 62/417 (14%), Positives = 111/417 (26%), Gaps = 51/417 (12%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW---------LMSTRPGISV 110
+ + P + AGR GKT L + ++T ++
Sbjct: 10 RAIYHQFTGRPHEPGFIPAEFFAVAGRRSGKTRAAGTLAGYVATLVDHSAYLATSERATI 69
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+A S Q + K + S + S+ L
Sbjct: 70 PVMAASTVQAQ--------KAFQACMVLEESSLLSKQIES----SNSETIKLKTRCDIEV 117
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ + + D T I + L N + S+P
Sbjct: 118 RPANHRTIRGITSPLAI-ADEVAFYFTD-GQNTDSQILDAVRPSLQSGNHAGPLVCISSP 175
Query: 231 RRLSGKFYE---IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
G+ Y+ + P D ++E I Y + V E G
Sbjct: 176 YAKRGELYDAFKNHHGPNGDAHVIVAKGASLEFNSTIDPATIARAYKRNPTVADAEYGGN 235
Query: 288 FPQQDIDSFIPLNIIEEALN---REPCPDPYAPLIMGCDIAEE---GGDNTVVVLRRGPV 341
F + D+ + L +E A + E P D A G + R V
Sbjct: 236 F-RSDVTNLFTLEAVEAATDLGVTERAPREGVQYFAHADPAGGSGADGFTLAIGHRENNV 294
Query: 342 -IEHLFDWSKT--DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ L K+ + T + L+ YR ++ DA R
Sbjct: 295 AVIDLIRERKSPYNPETVVADYADLLRLYRCATVVTDA-------------YASEWNRAA 341
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFAS--LINHSGLIQNLKSLKSFIVPNTGEL 453
+K ++ + +E + + L++ L L L+ + EL
Sbjct: 342 WRKAGIEPKSAPMTASEFFAALVPAVNSGQVALLDDETLKHQLVGLERRLSRGGREL 398
>gi|301169159|emb|CBW28756.1| phage d3 terminase-like protein [Haemophilus influenzae 10810]
Length = 555
Score = 64.2 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/381 (10%), Positives = 85/381 (22%), Gaps = 34/381 (8%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
+ F F + WQ + + +
Sbjct: 41 DESAVNKFLAFSRLCPHVKGHLRGQPIELS--DWQTFLFANLLG--FKRTDTGLRKYRSA 96
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN--- 137
I R K+T+ A L W + G I A ++ + + L P
Sbjct: 97 YIQVARKNAKSTVAAVLANWFLLMESGQQDIYTAAVSRDQARIVFDDARQMCLLSPPLRK 156
Query: 138 -----KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+H + P + S +++ + G
Sbjct: 157 RLNIQQHKLINPKSNSLMRPLAAKSSTIEGTNPSLAIVDEYHLHTDNSVYSALELGQGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ I S + + I+ N + S +
Sbjct: 217 PEGLLFAITTAGSNV--------ISACKQHYDYCAQILEGNEQNDSLFVLIFELDEESEI 268
Query: 249 KRFQIDTRTVEGIDP-----SFHEGIIARYGLDSDVTR--VEVCGQFPQQDIDSFIPLNI 301
+ + I F I G+ S+ + + Q N
Sbjct: 269 DNPENWIKANPNIGKSIPYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLGEGNW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNT-VVVLRRGPVIEHL--FDWSKTDLRTTNN 358
+ A N + +G D++ + +G + + + L N
Sbjct: 329 AQCARNYTESDLLHQDCYLGLDLSSTNDLTSLCYTFPQGKKVRLITRHYIPEFQLNNVAN 388
Query: 359 KISGLVEKYRPDAIIIDANNT 379
K + + +I
Sbjct: 389 KNRAIYRNWVRQGWLIATEGD 409
>gi|6739656|gb|AAF27357.1|AF198256_11 phage D3 terminase-like protein [Haemophilus influenzae]
Length = 555
Score = 64.2 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/381 (10%), Positives = 85/381 (22%), Gaps = 34/381 (8%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
+ F F + WQ + + +
Sbjct: 41 DESAVNKFLAFSRLCPHVKGHLRGQPIELS--DWQTFLFANLLG--FKRTDTGLRKYRSA 96
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN--- 137
I R K+T+ A L W + G I A ++ + + L P
Sbjct: 97 YIQVARKNAKSTVAAVLANWFLLMESGQQDIYTAAVSRDQARIVFDDARQMCLLSPPLRK 156
Query: 138 -----KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+H + P + S +++ + G
Sbjct: 157 RLNIQQHKLINPKSNSLMRPLAAKSSTIEGTNPSLAIVDEYHLHTDNSVYSALELGQGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ I S + + I+ N + S +
Sbjct: 217 PEGLLFAITTAGSNV--------ISACKQHYDYCAQILEGNEQNDSLFVLIFELDEESEI 268
Query: 249 KRFQIDTRTVEGIDP-----SFHEGIIARYGLDSDVTR--VEVCGQFPQQDIDSFIPLNI 301
+ + I F I G+ S+ + + Q N
Sbjct: 269 DNPENWIKANPNIGKSTPYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLGEGNW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNT-VVVLRRGPVIEHL--FDWSKTDLRTTNN 358
+ A N + +G D++ + +G + + + L N
Sbjct: 329 AQCARNYTESDLLHQDCYLGLDLSSTNDLTSLCYTFPQGKKVRLITRHYIPEFQLNNVAN 388
Query: 359 KISGLVEKYRPDAIIIDANNT 379
K + + +I
Sbjct: 389 KNRAIYRNWVRQGWLIATEGD 409
>gi|17987633|ref|NP_540267.1| Phage DNA packaging protein [Brucella melitensis bv. 1 str. 16M]
gi|260563648|ref|ZP_05834134.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv.
1 str. 16M]
gi|260566826|ref|ZP_05837296.1| ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str.
40]
gi|261219037|ref|ZP_05933318.1| phage DNA Packaging protein [Brucella ceti M13/05/1]
gi|261221792|ref|ZP_05936073.1| phage DNA Packaging protein [Brucella ceti B1/94]
gi|261321463|ref|ZP_05960660.1| phage DNA Packaging protein [Brucella ceti M644/93/1]
gi|261324708|ref|ZP_05963905.1| phage DNA Packaging protein [Brucella neotomae 5K33]
gi|261751918|ref|ZP_05995627.1| phage DNA Packaging protein [Brucella suis bv. 5 str. 513]
gi|261754576|ref|ZP_05998285.1| phage DNA Packaging protein [Brucella suis bv. 3 str. 686]
gi|265990705|ref|ZP_06103262.1| phage DNA Packaging protein [Brucella melitensis bv. 1 str. Rev.1]
gi|265994537|ref|ZP_06107094.1| phage DNA Packaging protein [Brucella melitensis bv. 3 str. Ether]
gi|265997756|ref|ZP_06110313.1| phage DNA Packaging protein [Brucella ceti M490/95/1]
gi|265999560|ref|ZP_05466908.2| ATP/GTP-binding site domain-containing protein A [Brucella
melitensis bv. 2 str. 63/9]
gi|17983344|gb|AAL52531.1| phage DNA packaging protein [Brucella melitensis bv. 1 str. 16M]
gi|260153664|gb|EEW88756.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv.
1 str. 16M]
gi|260156344|gb|EEW91424.1| ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str.
40]
gi|260920376|gb|EEX87029.1| phage DNA Packaging protein [Brucella ceti B1/94]
gi|260924126|gb|EEX90694.1| phage DNA Packaging protein [Brucella ceti M13/05/1]
gi|261294153|gb|EEX97649.1| phage DNA Packaging protein [Brucella ceti M644/93/1]
gi|261300688|gb|EEY04185.1| phage DNA Packaging protein [Brucella neotomae 5K33]
gi|261741671|gb|EEY29597.1| phage DNA Packaging protein [Brucella suis bv. 5 str. 513]
gi|261744329|gb|EEY32255.1| phage DNA Packaging protein [Brucella suis bv. 3 str. 686]
gi|262552224|gb|EEZ08214.1| phage DNA Packaging protein [Brucella ceti M490/95/1]
gi|262765650|gb|EEZ11439.1| phage DNA Packaging protein [Brucella melitensis bv. 3 str. Ether]
gi|263001489|gb|EEZ14064.1| phage DNA Packaging protein [Brucella melitensis bv. 1 str. Rev.1]
gi|263094670|gb|EEZ18449.1| ATP/GTP-binding site domain-containing protein A [Brucella
melitensis bv. 2 str. 63/9]
Length = 430
Score = 64.2 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 55/445 (12%), Positives = 113/445 (25%), Gaps = 68/445 (15%)
Query: 56 LEFMEVVDAHCLNSVNNPNPE---VFKGAISAGRGIGKTTLNAWLVLWLMSTRPG----- 107
+ + D + + + P I GRG GKT A V + P
Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76
Query: 108 -ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ + + + + S LS+ V
Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-------------------VRPRYEASRR 117
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFW 224
+ + + A DE + P + L + R
Sbjct: 118 RLIWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ T+ + + + F + I RY + + R E+
Sbjct: 178 VTTTP---RAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYA-GTRLGRQEL 233
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLRR--- 338
G+ ++ + + IE+ P P A +++ D + + D +V+
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVVAGIDA 291
Query: 339 --GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ + + L + DAI+ + N G L V
Sbjct: 292 EGVGHVLADESMTMAKPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPV 351
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMAD--WLEF-ASLINHSGLIQNLKSLKSFIVPNTGEL 453
+ + R E + + + +++ G
Sbjct: 352 LKRRASRGKW-----LRAEPVAALYEQGRVRHAGRFPA----LEDEMC----DFAPEG-- 396
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAE 478
+ S +S D D L++ E
Sbjct: 397 -LSS-----GRSPDRLDALVWALGE 415
>gi|167630904|ref|YP_001681403.1| phage terminase, large subunit, putative [Heliobacterium
modesticaldum Ice1]
gi|167593644|gb|ABZ85392.1| phage terminase, large subunit, putative [Heliobacterium
modesticaldum Ice1]
Length = 521
Score = 63.8 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 56/531 (10%), Positives = 129/531 (24%), Gaps = 80/531 (15%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLNSVNNPNP 75
M + F K T E + P WQ + + + +
Sbjct: 1 MAEGSRYDKEAADAAVAFINCLKHTKGEWYGMPFELIDWQEQIVRDIFGVLKPNGYR--- 57
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ + + GK+ L A + L+L G V A+ Q + ++ +
Sbjct: 58 QFNTAYVEIPKKQGKSELAAAIALYLTCGDFEHGGEVYGCASDRQQA-SIVFDVAVDMVE 116
Query: 134 LLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
P K + + L ++ + F H
Sbjct: 117 QCPALKSRIKPMLSQKRLIYRPLGSFYQVLSAEA----YTKHGLNVHGV-VFDELHAQPN 171
Query: 193 MAIINDEASGTPDVINLGILGFLTERNA---------NRFWIMTSNPRRLSGKFY--EIF 241
+ + G+ D + +T ++ R++ FY
Sbjct: 172 RDLYDVMLHGSGDARKQPLFFLITTAGTDRNSICWEVHQKAEDILQGRKIDSTFYPVIYS 231
Query: 242 NKPLDDWKRFQIDTRTVEGID-PSFHEGII------ARYGLDSDVTRVEVCGQFPQQDID 294
DDW ++ + + E + + + ++ R Q+ +Q +
Sbjct: 232 AADTDDWTSEKVWKKVNPSLGITVDIEKLRVAFENAKQNPAEENLFRQLRLNQWVKQSVR 291
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG------------------------- 329
A + G D++
Sbjct: 292 WMPMDKWDRCAFPVDADSLRGRFCYGGLDLSSTTDITAFVLVFPPLDESDKYQILPFFWI 351
Query: 330 -----------DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
D+ + + + + + I L KY I D
Sbjct: 352 PEDNIDQRVRRDHVPYDVWERQGFLYTTEGNVVHYGFIESFIEELGMKYNIREIAFDRWG 411
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQN 438
+ LE +G+ V + + + + + + + + +++
Sbjct: 412 A-VQMTQNLESMGFTVVPFGQGFKDMSPPT----KELMKLTLEERIAHGGHP----VLRW 462
Query: 439 LKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
+ G + + K + D + L+ S + G
Sbjct: 463 MMDNIFVKTDPAGNIK--PDKEKSTERIDGAVALIMALDRALRHSGENTGS 511
>gi|212703351|ref|ZP_03311479.1| hypothetical protein DESPIG_01394 [Desulfovibrio piger ATCC 29098]
gi|212673197|gb|EEB33680.1| hypothetical protein DESPIG_01394 [Desulfovibrio piger ATCC 29098]
Length = 509
Score = 63.8 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 44/322 (13%), Positives = 84/322 (26%), Gaps = 41/322 (12%)
Query: 86 RGIGKTTLNAWLVLWLMS--TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
R GKT +L +R A Q K W +
Sbjct: 39 RRFGKTVAAVNDLLRAALRTSRTDWRAAYAAPYLGQAKAVAW-------------DYLRH 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + ++ L C L ++ D Y ++ DE +
Sbjct: 86 FAGVIPGTRFHEGELRCDLPNGAR--------IRLYGTDNAQALRGLYLDDLVLDEPADI 137
Query: 204 P-DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-----KPLDDWKRFQIDTRT 257
P +V + + L +R + P+ ++++ + W RF+
Sbjct: 138 PREVWSQILRPALADR--RGRALFCGTPKGCDNLLHDVWQLAGSLGAAEGWSRFRFPASQ 195
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP---DP 314
+ + + AR G+ + E F ++ + L CP P
Sbjct: 196 TGYLPQAELD--AARSGMSEAEYQQEFECSFAAAVRGAYYAAQLDAADLAGRICPLPVSP 253
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
P+ D+ D T + +E W D + +
Sbjct: 254 DLPVHTAWDLGM--DDATAIWF---FQVEPSGTWRMLDYYEASGEGLAHYAAVLGAKARP 308
Query: 375 DANNTGARTCDYLEMLGYHVYR 396
+ T G H+
Sbjct: 309 EGTATTDGLAGRGFCYGRHLAP 330
>gi|229096952|ref|ZP_04227921.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
Rock3-29]
gi|228686562|gb|EEL40471.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
Rock3-29]
Length = 562
Score = 63.8 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 44/371 (11%), Positives = 88/371 (23%), Gaps = 42/371 (11%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
+L E ++ +E ++ P + + WQ +
Sbjct: 37 NDLKRQGTEEFPW---IFDEEKAHRPIRYIEKFCRP---SKGDYKRLVL-QPWQHFVIGS 89
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQ 119
+ +G I GR GKTT+ + L + + PG V LAN++ Q
Sbjct: 90 LYGWVHKDTG--YRRFREGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQ 147
Query: 120 LKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
L+ E + P N+ P SD
Sbjct: 148 AGE-LFDESRAMVQKSPFLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFD 206
Query: 172 MCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFW 224
+ + G + I L
Sbjct: 207 EIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRK 266
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ + W + + + + + + + +
Sbjct: 267 FYFMAEMDSVDEIE-----NPELWIKANPNMGVSLDLPSLIDDW--NTDKHTDAEKNDWI 319
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVVV---LR 337
+ F D SF+ + I++ + + G D++ + + L
Sbjct: 320 TKQFNLFVDNDEMSFVGIEILKRNEGVIDIKGLAGKECVAGYDLSATEDFTSACLEFPLD 379
Query: 338 RGPVIEHLFDW 348
G V W
Sbjct: 380 DGNVFVLSHSW 390
>gi|229142759|ref|ZP_04271217.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
BDRD-ST26]
gi|228640704|gb|EEK97077.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
BDRD-ST26]
Length = 524
Score = 63.8 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 42/355 (11%), Positives = 85/355 (23%), Gaps = 39/355 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E ++ P + + WQ + +
Sbjct: 12 IFDEEKAHRPIRYIEKFCRP---SKGDYKRLVL-QPWQHFVIGSMYGWIHKDTG--YRRF 65
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+G I GR GKTT+ + L + + PG V LAN++ Q L+ E +
Sbjct: 66 REGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQAGE-LFDESRAMVQKS 124
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P N+ P SD + +
Sbjct: 125 PFLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFDEIHEFKNFKLINVIKK 184
Query: 184 FVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
G + I L +
Sbjct: 185 SRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLERVIDQDRKFYFMAEMDSVDEIE-- 242
Query: 241 FNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
+ W + + + + + + + + + F D SF+
Sbjct: 243 ---NPELWIKANPNMGVSLDLPSLIDDW--NTDKHTEAEKNDWITKQFNIFVDNDEMSFV 297
Query: 298 PLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVVV---LRRGPVIEHLFDW 348
+ I++ + + G D++ + + L G V W
Sbjct: 298 GIEILKRNEEVIDIKELAGKECVAGYDLSSTEDFTSACLEFPLNDGNVFVLSHSW 352
>gi|227330003|ref|ZP_03834027.1| phage terminase subunit GpP [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 103
Score = 63.8 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 412 RRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
+T + +K D + L + + Q+ +++ + + E+ R + D
Sbjct: 15 IKTAMVLKAKDTITSGRLEYDTSHTDITQSFMAIRKTMTASGNRTTYEASRSEEISHADV 74
Query: 469 SDGLMYTFAENP 480
+ M+ P
Sbjct: 75 AWATMHALLNEP 86
>gi|221316961|ref|YP_002533105.1| putative terminase large subunit - phage associated [Bacillus
cereus Q1]
gi|221243293|gb|ACM16001.1| putative terminase large subunit - phage associated [Bacillus
cereus Q1]
Length = 425
Score = 63.8 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 39/299 (13%), Positives = 81/299 (27%), Gaps = 17/299 (5%)
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
+ K GRG GK+T + ++ + P I+V+C+ + ++ + + ++ +
Sbjct: 21 RKCESILKIVCKGGRGSGKSTDISICIVMDLIQFP-ITVLCIRKVKDTIRESCYEQIKEA 79
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ +L +H F + + G D + +
Sbjct: 80 IEILGVEHLFRFKESPMEIIYKPRGNKIIFRGADDPAKIKSIKIAKYPVAIAW----FEE 135
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+E + + L + + + P+R + F F
Sbjct: 136 LAEFKLEE--DVSTIEKSILRKELPNGLRYKMYYSYNPPKRKQSWVNKKFETQFKPKNTF 193
Query: 252 --QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
I F E L E G+ +P + + +
Sbjct: 194 VHHSTYHDNPHISKQFVEEAEETKRLKPQQYEHEYEGKP---TGSGVVPFSNLTFRRITD 250
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVL-----RRGPVIEHLFDWSKTDLRTTNNKISGL 363
+ + G D + + RR I K R+ KI L
Sbjct: 251 EEIKTFDNIRQGIDWGYGNDALSFGRMHYDKTRRKLYIFGEIHGVKISNRSLAEKIKQL 309
>gi|108799880|ref|YP_640077.1| phage terminase [Mycobacterium sp. MCS]
gi|119868990|ref|YP_938942.1| phage terminase [Mycobacterium sp. KMS]
gi|108770299|gb|ABG09021.1| phage Terminase [Mycobacterium sp. MCS]
gi|119695079|gb|ABL92152.1| phage Terminase [Mycobacterium sp. KMS]
Length = 489
Score = 63.8 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 52/380 (13%), Positives = 96/380 (25%), Gaps = 46/380 (12%)
Query: 23 EIKLSFSNFVLHF--FPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
+ F F KGT R WQ E V
Sbjct: 18 PQSTGSARFAKFCEKFIRVPKGTGARTPLRLREWQQELAGSVLDADPRPRTAGWML---- 73
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL----- 135
RG GK+TL A L+ T +V+C+ + + ++ + + L
Sbjct: 74 ----PRGQGKSTLLAAYGLYDFFTGDEGAVVCVVAVDERQAGIIFGIARRMVELSDELAS 129
Query: 136 ---PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT---FVGHHN 189
K + H ++ + S + + G
Sbjct: 130 RCQVFKERLYIPERDAHFHCLPAEPKRLEGLDYTTALLDEAGVASRDSYEVLTLAQGKRA 189
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
+ I PD N + + + L + +
Sbjct: 190 QSTLIAIGTPG---PDPNNQVL------ADLRNYAADHPEDASLVWREFSAAGFEDHPVD 240
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLD---SDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
+D H + R QF +F+P + +
Sbjct: 241 CTHCWELANPALDDFLHRDALYALLPPKTREATFRRARLCQFASDTDGAFLPQGVWDGLS 300
Query: 307 NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG---PVIEHLFDWSKTD--------LRT 355
P PD +++ D D T ++ P + + W +T+ +
Sbjct: 301 TGRPIPD-GTEVVVALD-GSFSDDTTALLAGTVSAEPHFDTIHVWQRTNGDDSYRVPVAE 358
Query: 356 TNNKISGLVEKYRPDAIIID 375
++I ++R II D
Sbjct: 359 VEDEIRAACRRWRVAEIIAD 378
>gi|206975237|ref|ZP_03236151.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
cereus H3081.97]
gi|206746658|gb|EDZ58051.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
cereus H3081.97]
Length = 590
Score = 63.8 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/371 (11%), Positives = 88/371 (23%), Gaps = 42/371 (11%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
+L E ++ +E ++ P + + WQ +
Sbjct: 65 NDLKRQGTEEFPW---IFDEEKAHRPIRYIEKFCRP---SKGDYKRLVL-QPWQHFVIGS 117
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQ 119
+ +G I GR GKTT+ + L + + PG V LAN++ Q
Sbjct: 118 LYGWIHKDTG--YRRFREGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQ 175
Query: 120 LKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
L+ E + P N+ P SD
Sbjct: 176 AGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFD 234
Query: 172 MCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFW 224
+ + G + I L
Sbjct: 235 EIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGIIDQDRK 294
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ + W + + + + + + + +
Sbjct: 295 FYFMAEMDNVDEIE-----NPELWIKANPNMGVSLDLPSLIDDW--NTDKHTDAEKNDWI 347
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVVV---LR 337
+ F D SF+ + I++ + + G D++ + + L
Sbjct: 348 TKQFNIFVDNDEMSFVGIEILKRNEGVIDIKGLAGKECVAGYDLSATEDFTSACLEFPLD 407
Query: 338 RGPVIEHLFDW 348
G V W
Sbjct: 408 DGNVFVLSHSW 418
>gi|254437946|ref|ZP_05051440.1| conserved hypothetical protein [Octadecabacter antarcticus 307]
gi|198253392|gb|EDY77706.1| conserved hypothetical protein [Octadecabacter antarcticus 307]
Length = 441
Score = 63.8 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 69/458 (15%), Positives = 128/458 (27%), Gaps = 76/458 (16%)
Query: 55 QLEFMEVVDA-HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---- 109
QL+ + + L+ P + I GRG GKT A W+ S G
Sbjct: 21 QLKALPYLFEFWALDHQLAPEGDWRTWVILGGRGAGKTRAGAE---WVRSMVEGSRPRDP 77
Query: 110 -----VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
V + + Q + + S L+ P + S + W +
Sbjct: 78 GIAKHVGLIGETMEQAREVMVFGTSGILACSPPDRRPQWISGR-NLLIWPNGAE------ 130
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG-ILGFLTERNANRF 223
R YS P+ A+ DE + P + ++ F AN
Sbjct: 131 --------ARLYSAFDPER---LRGPQFDAVWADELAKWPKAQSTWDMMQFGLRLGANPR 179
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
+T+ P+ + + F + SF + + RY + + R E
Sbjct: 180 ACVTTTPKNVE--ILKDFMARKSTVHTHATTQANRAYLADSFLQEVQERY-CGTRLGRQE 236
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVL---- 336
+ G + +E +++ D A D +V+
Sbjct: 237 LDGVLLADVDGALWSSARLE--AGHVTKLPQMDRIVVAVDPPAGANATSDACGIVVAGIV 294
Query: 337 ------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
+ ++++ D ++ + N GA + +
Sbjct: 295 SQGPVSGWKIYVIEDASVQGVSPNEWAAAAIAAMDRHGADRMVAEVNQGGAMVEAIVRSI 354
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL--IQNLKSLKSFIVP 448
V RAV + R E + + + + GL +++ +
Sbjct: 355 DPSVSY-----RAVHATRGKAMRAEPVAALYE---QGRVHHAFGLGELEDEMCQ----MT 402
Query: 449 NTGELAIESKRVKGAKSTDYSDGLMYT----FAENPPR 482
G G S D D L++ F E R
Sbjct: 403 AQGY--------AGTGSPDRVDALVWALTDLFLEPAKR 432
>gi|120436787|ref|YP_862473.1| phage terminase large subunit [Gramella forsetii KT0803]
gi|117578937|emb|CAL67406.1| phage terminase large subunit [Gramella forsetii KT0803]
Length = 506
Score = 63.8 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/240 (15%), Positives = 72/240 (30%), Gaps = 32/240 (13%)
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP---CPDPYAPLI 319
+ E + D D + G + P+++ A ++
Sbjct: 246 KNNPEYLANLASQDEDARNQLLAGNWKVSLN----PMDVYHYASFKDIFNNDFVKAGEKY 301
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII--DAN 377
+ D+A G D V+ L G I L K+ + ++I + K+ I DAN
Sbjct: 302 ITVDVATSGKDKLVIWLWEGFRIRDLMKIDKSTGKDIIDEIKAMALKWGVPNRRIAYDAN 361
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRA---VDLEFCRNRRTELHVKMADWLEFAS------ 428
GA + R D +N +T+ +V + +E
Sbjct: 362 GVGAFIGGADNAFIPNSIAFDSNNRPRETKDGRKFKNLKTQCYVLSGERVERNEIWVMPQ 421
Query: 429 ----LINHSGLIQNLKSLKSFIVPNTGE--------LAIESKRVK--GAKSTDYSDGLMY 474
+ + I+ + + + + E + K +STD D M
Sbjct: 422 VANMMFDEKQTIRQRMLAERKAIKKQPKKDEEPQALIKKEEMKAKYLNGESTDLLDPFMM 481
>gi|119869106|ref|YP_939058.1| phage terminase [Mycobacterium sp. KMS]
gi|119695195|gb|ABL92268.1| phage Terminase [Mycobacterium sp. KMS]
Length = 489
Score = 63.8 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 61/375 (16%), Positives = 106/375 (28%), Gaps = 53/375 (14%)
Query: 30 NFVLHF--FPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRG 87
FV F KGT PR WQ++ + V +V P RG
Sbjct: 28 RFVKFCEKFLRTPKGTGAREVFRPREWQMDIVRDVLDSGARTVGLMMP----------RG 77
Query: 88 IGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLSLL----------P 136
GKTTL+A ++L++ TR G +V+ A E Q + + ++ + L
Sbjct: 78 QGKTTLSAAILLYIFFTRGEGANVVLFAVDERQA-SLAFRVAARMVQLSEDLSSRCYVYA 136
Query: 137 NKHWFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+K + + + + E G +
Sbjct: 137 DKLVLPLTDSTYQVMPASAAAAEGLDYVACLCDEAGVINRDVFEVAQLAQGKRERSVLIA 196
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
I P+ L L + P S + E +D
Sbjct: 197 IGTPGPD-PNDQVLADLRAYAAEH----------PDDKSLVWREFSAAGFEDHGADCPHC 245
Query: 256 RT--VEGIDPSFHEGIIARYGLD---SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+D H + R QF +F+P + E P
Sbjct: 246 WELANPALDDFLHRDALHALLPPKTREATFRRARLCQFSTDTDGAFLPAGVWEGLSTSSP 305
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRG-----PVIEHLFDWSKTDL-----RTTNNKI 360
P P +++ D GD T +++ + ++D + I
Sbjct: 306 VP-PGVDVVLALD-GSYNGDTTALLVGTVSAEPHFDVVQVWDPKGDPDYRVPVAEVEDVI 363
Query: 361 SGLVEKYRPDAIIID 375
++++ II D
Sbjct: 364 RRSAKEWQVVEIIAD 378
>gi|293368016|ref|ZP_06614649.1| large terminase subunit [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291317838|gb|EFE58251.1| large terminase subunit [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 421
Score = 63.8 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/310 (11%), Positives = 88/310 (28%), Gaps = 31/310 (10%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GK++ + ++ + R ++ + + ++ L T+++ ++ + H
Sbjct: 30 VVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWAIEEQKVSH 88
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
F+++ + + + ER + + + I +
Sbjct: 89 LFKVKVSPMEITYVP-----------RGNRIIFRGAQNPERLKSLKDSRFPFSIMWIEEL 137
Query: 200 ASGTPDVINLGI-----LGFLTERNANRFWIMTSNPRRLSGKFYEIFNK--PLDDWKRFQ 252
A + I G L + +F+ + P+R + + D+
Sbjct: 138 AEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQPDNTFVHH 197
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
I F + + + R E G+ +P N ++ +
Sbjct: 198 STYLDNPFISKQFIQEAESTKERNELRYRWEYMGEAIGSG---VVPFNNLQIEKIPDELY 254
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKISGLVEK 366
+ + D D V + R N +
Sbjct: 255 KSFDNIRNAVDFG-YATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLKR--RG 311
Query: 367 YRPDAIIIDA 376
Y+ D I D+
Sbjct: 312 YQSDEIFADS 321
>gi|119953680|ref|YP_950600.1| putative large terminase subunit [Staphylococcus phage CNPH82]
gi|112361306|gb|ABI15678.1| putative large terminase subunit [Staphylococcus phage CNPH82]
gi|329736010|gb|EGG72285.1| phage terminase, large subunit, PBSX family [Staphylococcus
epidermidis VCU045]
Length = 421
Score = 63.8 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 38/315 (12%), Positives = 89/315 (28%), Gaps = 31/315 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
E GRG GK++ + ++ + R ++ + + ++ L T+++ ++ +
Sbjct: 25 REKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWAIEE 83
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H F+++ + + + ER + + +
Sbjct: 84 QKVSHLFKVKVSPMEITYVP-----------RGNRIIFRGAQNPERLKSLKDSRFPFSIM 132
Query: 195 IINDEASGTPDVINLGI-----LGFLTERNANRFWIMTSNPRRLSGKFYEIFNK--PLDD 247
I + A + I G L + +F+ + P+R + + D+
Sbjct: 133 WIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQPDN 192
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
I F + + + R E G+ +P N ++
Sbjct: 193 TFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGEAIGSG---VVPFNNLQIEKI 249
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKIS 361
+ + + D D V + R N +
Sbjct: 250 PDDLYKTFDNIRNAVDFG-YATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLK 308
Query: 362 GLVEKYRPDAIIIDA 376
Y+ D I D+
Sbjct: 309 R--RGYQSDEIYADS 321
>gi|154488071|ref|ZP_02029188.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis
L2-32]
gi|154083544|gb|EDN82589.1| hypothetical protein BIFADO_01641 [Bifidobacterium adolescentis
L2-32]
Length = 477
Score = 63.4 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 48/369 (13%), Positives = 89/369 (24%), Gaps = 44/369 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISV 110
WQ + +V A + + A+ + R GKT W+ + + PG+ +
Sbjct: 37 DPWQRQINRIVLA-----KSADGFWSARNAVLSIPRQTGKTYDIGWVAIHRAARTPGMRI 91
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ A + +K T + + L + SL +
Sbjct: 92 VWTAQHFSVIKDTFESLCAIVLR--------------PEMSGLVDPDHGISLAAGKEEIR 137
Query: 171 TMCRTYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFL-TERNANRFWIMTS 228
+ R ++ DEA D +L N ++ T
Sbjct: 138 FRNGSRIFFRARERGALRGVKKIALLVIDEAQHLSDSAMASMLPTQNRAYNPQTIYMGTP 197
Query: 229 NPRRLSGKFYEIFNKPL---DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS-------- 277
R +G+ + ++ DP E
Sbjct: 198 PGPRDNGEAFTRLRDKARAGRTHSTLYVEFAADRDADPLDREQWRKANPSYPAHTSDESI 257
Query: 278 ---------DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEG 328
D R E G + + + I EEA P + +
Sbjct: 258 ANLWENLTGDDFRREALGIWDEHALSRAIDRRQWEEATIDARRPGGVMSFGIDMNPQRTR 317
Query: 329 GDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP--DAIIIDANNTGARTCDY 386
+ + L++K A++ID +
Sbjct: 318 LTIGACMRYDDGTAHIELAEYRDTNHDGTMWAVNLIDKVWEQTAALVIDGQSPATALLPD 377
Query: 387 LEMLGYHVY 395
L G V
Sbjct: 378 LAEAGITVT 386
>gi|254293613|ref|YP_003059636.1| hypothetical protein Hbal_1247 [Hirschia baltica ATCC 49814]
gi|254042144|gb|ACT58939.1| protein of unknown function DUF264 [Hirschia baltica ATCC 49814]
Length = 397
Score = 63.4 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 56/403 (13%), Positives = 105/403 (26%), Gaps = 55/403 (13%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GKT A + + V + + + ++ + S ++ P +
Sbjct: 21 GGRGAGKTRAGAEWIRSQIWEHGKQRVALVGPTLSDVREVMIEGPSGLRNIGPAEERPIY 80
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
W + + A DE
Sbjct: 81 SPSRRRL-EWPNGAEGF-----------------VFSAEDPDSLRGPQFDAAWGDEIGAW 122
Query: 204 PDV---INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
++ + G N T P K +
Sbjct: 123 HRGQTCWDMLMFGLRLGDNPRICATTTPRPT----PLIRKLVKLDNIEITRASTLENAHN 178
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
+ PSF E + A YG + + R E+ G+ + + IE + +++
Sbjct: 179 LAPSFLEAVQANYG-GTRLGRQEIDGELIDDPKGALWLRSQIETNRTINAK-HEFQRIVV 236
Query: 321 GCDI---AEEGGDNTVVV---LRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYRPDAI 372
D D ++ LR+ + + SGL +Y I
Sbjct: 237 AIDPPISKGVNADTCGIIAAGLRQDGKSVIIADASVQGLRPLDWAARASGLAAEYGNAEI 296
Query: 373 IIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH 432
+ +AN G D LEM G V V + + L+ + + S
Sbjct: 297 VAEANQGGEMVRDVLEMAGC-VSPVRLVHARLSKAARASPVAALYAQGK-VMHGGSFPA- 353
Query: 433 SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+++ + + S D D L++
Sbjct: 354 ---LEDQMCIFGSDAASG--------------SPDRVDALVWA 379
>gi|217959638|ref|YP_002338190.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
cereus AH187]
gi|217067069|gb|ACJ81319.1| putative prophage LambdaBa02, terminase, large subunit [Bacillus
cereus AH187]
Length = 591
Score = 63.4 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 44/371 (11%), Positives = 88/371 (23%), Gaps = 42/371 (11%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
+L E ++ +E ++ P + + WQ +
Sbjct: 66 NDLKRQGTEEFPW---IFDEEKAHRPIRYIEKFCRP---SKGDYKRLVL-QPWQHFVIGS 118
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQ 119
+ +G I GR GKTT+ + L + + PG V LAN++ Q
Sbjct: 119 LYGWIHKDTG--YRRFREGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQ 176
Query: 120 LKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
L+ E + P N+ P SD
Sbjct: 177 AGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFD 235
Query: 172 MCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFW 224
+ + G + I L
Sbjct: 236 EIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRK 295
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ + W + + + + + + + +
Sbjct: 296 FYFMAEMDNVDEIE-----NPELWIKANPNMGVSLDLPSLIDDW--NTDKHTDAEKNDWI 348
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVVV---LR 337
+ F D SF+ + I++ + + G D++ + + L
Sbjct: 349 TKQFNIFVDNDEMSFVGIEILKRNEGVIDIKGLTGKECVAGYDLSATEDFTSACLEFPLD 408
Query: 338 RGPVIEHLFDW 348
G V W
Sbjct: 409 DGNVFVLSHSW 419
>gi|319786769|ref|YP_004146244.1| phage terminase, large subunit, PBSX family [Pseudoxanthomonas
suwonensis 11-1]
gi|317465281|gb|ADV27013.1| phage terminase, large subunit, PBSX family [Pseudoxanthomonas
suwonensis 11-1]
Length = 439
Score = 63.4 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/349 (10%), Positives = 79/349 (22%), Gaps = 29/349 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A L + PG ++ L+ EV K L K E
Sbjct: 26 GGRGSGKSHFFAGLAVEDAIAFPG-------DAGEGLRMVCIREVQKSLKHS-AKSLIEA 77
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + + + + + D+ + +EA
Sbjct: 78 KLAEFGMREADGFKVFNEVIKTPGDGVIIFQGMQDHTADSIKSLEGFHR--AWVEEAQSL 135
Query: 204 PDVINLGILGFLTERNANRFWIM----TSNPRRLSGKFYEIFNKPLD--DWKRFQIDTRT 257
+ + +A R NPRR + + P + +
Sbjct: 136 SSTSLGLLRPTIRWEDAGRGLTSEMWFGWNPRRKTDPVDVLLRGPEPPTGAAVVRANWSD 195
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
+ + D G + ++ ++ P
Sbjct: 196 NPWFPSVLEQERLDCLRSMPDQYEHIWEGGYATAATGAYFAQALVTAKSEGRIGRVAADP 255
Query: 318 L-----IMGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
L D + + + G + L + + Y
Sbjct: 256 LMTTRAYWDIGGTGAKADACAIWIVQFVGREVRVLDYYEAQGQPLATHVAWLRSRGYERA 315
Query: 371 AIIIDANNTGARTCDY------LEMLGYHVYRVLGQKRAVDLEFCRNRR 413
++ + L+ G+ V + + R
Sbjct: 316 QCVLPHDGAANDKVHQVSYQSALQQAGFDVRVIPNMGAGAASKRIEAVR 364
>gi|46143644|ref|ZP_00204538.1| COG1783: Phage terminase large subunit [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 407
Score = 63.4 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 83/301 (27%), Gaps = 28/301 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG KT A + R ++C L+ + EV + +
Sbjct: 27 GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAIR------ 80
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
S S + Y ++ + + + +E
Sbjct: 81 -----STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARI-----LLAWVEE 130
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A +V + + E N+ W+ + +R S ++ K +++
Sbjct: 131 AETVSEVAWQKLEPTVREHNSE-IWVTWNPEKRGSATDLRFRQHVPENAKIIEMNYSDNP 189
Query: 260 GIDPSFHEGIIARYGL-DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ +A D R G + +Q E EP PD P
Sbjct: 190 WFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQEL--EFEPNPDFDGPY 247
Query: 319 IMGCDIAEEGGDNTVV--VLRRGPVIEHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIID 375
G D + + G + + +L T + ISG + ++ D
Sbjct: 248 H-GLDFGFANDPTAAIKCWVFDGDLYIEYEAGQVRLELDETASFISGRIPEFEKYISRAD 306
Query: 376 A 376
+
Sbjct: 307 S 307
>gi|228960169|ref|ZP_04121827.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228799519|gb|EEM46478.1| Prophage LambdaBa02, terminase, large subunit [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 524
Score = 63.4 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/338 (11%), Positives = 80/338 (23%), Gaps = 36/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E ++ P + + WQ + +
Sbjct: 12 IFDEEKAHRPIRYIEKFCRP---SKGDYKRLVL-QPWQHFVIGSLYGWIHKDTG--YRRF 65
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+G I GR GKTT+ + L + + PG V LAN++ Q L+ E +
Sbjct: 66 REGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQAGE-LFDESRAMVQKS 124
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P N+ P SD + +
Sbjct: 125 PFLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFDEIHEFKNFKLINVIKK 184
Query: 184 FVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
G + I L +
Sbjct: 185 SRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRKFYFMAEMDSVDEIE-- 242
Query: 241 FNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
+ W + + + + + + + + + F D SF+
Sbjct: 243 ---NPELWIKANPNMGVSLDLPSLIDDW--NTDKHTDAEKNDWITKQFNIFVDNDEMSFV 297
Query: 298 PLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVV 334
+ I++ + + G D++ +
Sbjct: 298 GIEILKRNEEVIDIKGLAGKECVAGYDLSATEDFTSAC 335
>gi|226366383|ref|YP_002784166.1| phage terminase family protein [Rhodococcus opacus B4]
gi|226244873|dbj|BAH55221.1| phage terminase family protein [Rhodococcus opacus B4]
Length = 511
Score = 63.4 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 61/516 (11%), Positives = 133/516 (25%), Gaps = 63/516 (12%)
Query: 7 TNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV---- 62
T P + + D L + ++ +Q+ ++ +
Sbjct: 19 TEPYCPLEWTPPLSPDAPSDGPRARALACKLFKQENGKYLEL---DDYQIRLIDSILELY 75
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
+ +S R GK+TL + LV + M ++ LA+++ Q K
Sbjct: 76 PDDYEVEHLRGCLRYRQAIVSIPRRNGKSTLASVLVTYSMLLSVAPNIGVLASTKEQAKE 135
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
+ + K F+ + + H + + T+ P
Sbjct: 136 VFDNTKYNFENNEALKKRFKTTNSKGLESRRTDKPAHFKIHAGNGDGL-QGITFVGNVPV 194
Query: 183 TFVGHHNTYG---------------MAIINDEASGTPDVI-----NLGILGFLTERNANR 222
H T +I +GT D +
Sbjct: 195 VVDELHITKTEAYDAAVKGASTCLSAVVIGITTAGTEDSELLKRLYKTGQAAIAGGEDAN 254
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID-PSFHEGIIARYGLDSDVTR 281
+ G L + ID A D R
Sbjct: 255 PRFGFWHWTVAEGTELFDREALL---RANPASQTNPPRIDIDQEILEGKANPAGDYAEFR 311
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV 341
+F D ++ L++ +A + ++ D + TV +
Sbjct: 312 RYRRNEFI-HSEDIWLSLDVWAKANGKGIPEHYTGNVVYSIDKTQGWEWATVTAAAKIDD 370
Query: 342 IEH---LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ + + + +L L R + ++ N L L ++
Sbjct: 371 VVYTEMVCRIYQPNLEYLEQVCMYLYSNQRAELFVV--NGM------ALRDLAINLREQH 422
Query: 399 GQKRAVDLEFCRNRRTELHVKMADW---LEFASLIN-HSGLIQNLKSLKSFIVPNTGELA 454
E ++ + + +I+ L++ + L + ++ N+G
Sbjct: 423 NLPAEYITE------AQMVSATSTATSLIGTGRMIHADEPLMK--RQLPNTVMKNSG--- 471
Query: 455 IESKRVKGAKSTDYSDGL---MYTFAENPPRSDMDF 487
E ++ ST D + + + DF
Sbjct: 472 -EGVKISITHSTGEIDAVRSMVMAVYQAERMEMQDF 506
>gi|306845199|ref|ZP_07477775.1| Phage DNA packaging protein [Brucella sp. BO1]
gi|306274358|gb|EFM56165.1| Phage DNA packaging protein [Brucella sp. BO1]
Length = 430
Score = 63.4 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 55/445 (12%), Positives = 113/445 (25%), Gaps = 68/445 (15%)
Query: 56 LEFMEVVDAHCLNSVNNPNPE---VFKGAISAGRGIGKTTLNAWLVLWLMSTRPG----- 107
+ + D + + + P I GRG GKT A V + P
Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76
Query: 108 -ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ + + + + S LS+ V
Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-------------------VRPRYEASRR 117
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFW 224
+ + + A DE + P + L + R
Sbjct: 118 RLIWDNGAVATLFSSEDPDSLRGPQFDAAWYDELAKWKNPQETWDMLQFGLRLGDNPRQV 177
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ T+ + + + F + I RY + + R E+
Sbjct: 178 VTTTP---RAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYA-GTRLGRQEL 233
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLRR--- 338
G+ ++ + + IE+ P P A +++ D + + D +V+
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVVAGIDA 291
Query: 339 --GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ + + L + DAI+ + N G L V
Sbjct: 292 EGVGHVLADESMTMAKPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPV 351
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMAD--WLEF-ASLINHSGLIQNLKSLKSFIVPNTGEL 453
+ + R E + + + +++ G
Sbjct: 352 LKRRASRGKW-----LRAEPVAALYEQGRVRHAGRFPA----LEDEMC----DFAPEG-- 396
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAE 478
+ S +S D D L++ E
Sbjct: 397 -LSS-----GRSPDRLDALVWALGE 415
>gi|87307615|ref|ZP_01089759.1| hypothetical protein DSM3645_28877 [Blastopirellula marina DSM
3645]
gi|87289785|gb|EAQ81675.1| hypothetical protein DSM3645_28877 [Blastopirellula marina DSM
3645]
Length = 429
Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/347 (14%), Positives = 93/347 (26%), Gaps = 59/347 (17%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL---------- 99
P Q E + H + GR GKT +
Sbjct: 25 LPLPHQREILRDRHRHKR--------------VICGRRWGKTGAGLIAAILGHGDPSGPG 70
Query: 100 WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
G ++ +A + Q K E L+ +
Sbjct: 71 HWKGMVDGGTLYWVAPTFAQSKKI---ERDIMLAFA--------------------NSGL 107
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN-LGILGFLTER 218
+ + + + + + V +I DE + + + L++R
Sbjct: 108 VYVKSEGRIEHPSGGSITIKTAAAPVSLRGEGLDGMIGDEFAFVRKEVWSDALRPALSDR 167
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
++ T N K + +K +Q T ID + + + G S
Sbjct: 168 RGWSMFLTTPNGPNW-MKDQHDLDGVDPTYKSWQCPTSDNCLIDQAELDSALLDLGQAS- 225
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEA--LNREPCPDPYAPLIMGCDIAEEGGDNT---- 332
E QF F L + P ++G D ++ D +
Sbjct: 226 -FDQEYRAQFVDVSGAEFSGLYFQTPKFWFDDWPPESEIRFRVIGLDPSKGKNDKSDYSA 284
Query: 333 --VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
++ L I D + D+R K L + P +I++ N
Sbjct: 285 FVMLALAGDGQIYVDADIERRDVRKIAEKAFELCALFEPTGMIVETN 331
>gi|261757806|ref|ZP_06001515.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
F5/99]
gi|261737790|gb|EEY25786.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
F5/99]
Length = 430
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/445 (12%), Positives = 113/445 (25%), Gaps = 68/445 (15%)
Query: 56 LEFMEVVDAHCLNSVNNPNPE---VFKGAISAGRGIGKTTLNAWLVLWLMSTRPG----- 107
+ + D + + + P I GRG GKT A V + P
Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76
Query: 108 -ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ + + + + S LS+ V
Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-------------------VRPRYEASRR 117
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFW 224
+ + + A DE + P + L + R
Sbjct: 118 RLIWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ T+ + + + F + I RY + + R ++
Sbjct: 178 VTTTP---RAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYA-GTRLGRQKL 233
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLRR--- 338
G+ ++ + + IE+ P P A +++ D + + D +V+
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVVAGIDA 291
Query: 339 --GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ + + L + DAI+ + N G L V
Sbjct: 292 EGVGHVLADESMTMAKPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAEDPSVPV 351
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMAD--WLEF-ASLINHSGLIQNLKSLKSFIVPNTGEL 453
+ + R E + + + +++ G
Sbjct: 352 LKRRASRGKW-----LRAEPVAALYEQGRVRHAGRFPA----LEDEMC----DFAPEG-- 396
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAE 478
+ S +S D D L++ E
Sbjct: 397 -LSS-----GRSPDRLDALVWALGE 415
>gi|298247861|ref|ZP_06971666.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
gi|297550520|gb|EFH84386.1| conserved hypothetical protein [Ktedonobacter racemifer DSM 44963]
Length = 499
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 57/431 (13%), Positives = 116/431 (26%), Gaps = 63/431 (14%)
Query: 37 PWGEKGT----PLEGFSAP-RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT 91
PW E+ E P +Q + + L + + R +GK
Sbjct: 13 PWPERPGLGWFAREVLGKPLYPYQELVGDAILESVLEGRGD------TFTVMFARQMGKN 66
Query: 92 TLNAWLVLWLMSTRPGISVICLANSET-QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHP 150
L+A L +L+ S++ A + Q + +S + L ++ ++
Sbjct: 67 QLSATLEAYLLFCMREGSIVKAAPTYKPQTINSRQRLLSLLDNPLMRNRVWKHYGYTIGM 126
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
AP + + + S + + DEA
Sbjct: 127 APRHE--QVPYQTGPRVMFFSAGPGASIVGATAS--------LLLEIDEAQSIDPNKYDT 176
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFN-----KPLDDWKRFQIDTRTVEGID--- 262
L + + + + + + + F D RT+ I+
Sbjct: 177 DLRPMASTTNATTVLYGTAWSEETLLARMRTHNLELERLDGRQRHFAYDWRTLAAINDHY 236
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP---LI 319
+ E I R G D R + L P +
Sbjct: 237 KRYVESEIKRLGEDHISIRTQYRLLPILGSGYLLNDLQFSLLRGQHTWESSPDPAEGFYV 296
Query: 320 MGCDIAEEGG----------DNTVVVLRRG---------PVIEHLFDWSKTDLRTTNNKI 360
G DIA E D+T++ + R I +DW+ +
Sbjct: 297 AGLDIAGEQHARPGQPAGKHDSTILTIGRVTINDLGLPELRIVRHYDWTGMKYTDQYAAV 356
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYH-VYRVLGQKRAVDLEFCRNRRTELHV 418
S ++ ++ ++D G L LG + + + +++L
Sbjct: 357 SRILPEWNVRRTVVDKTGLGEGLASLLSTRLGTERIRSFHFTRAS---------KSQLTY 407
Query: 419 KMADWLEFASL 429
+ + +
Sbjct: 408 HLLGLINAGRV 418
>gi|251783038|ref|YP_002997341.1| terminase large subunit [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391668|dbj|BAH82127.1| terminase large subunit [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 424
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/315 (13%), Positives = 89/315 (28%), Gaps = 31/315 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P++ A GRG GK++ A+++ L+ P ++ +C+ ++ L+ +++ ++ +S
Sbjct: 23 PKILNIACKGGRGSGKSSNIAFIISRLIIQYP-VNAVCIRKTDNTLEQSVYEQIKWAISE 81
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ +F+ L +Y + ER + + +
Sbjct: 82 QGLERYFKFNKSPLRITYIP-----------RGNYIVFRGAQNPERIKSLKDSRFPFAIG 130
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIM-----TSNPRRLSGKFYEIFNKPLDDWK 249
I + A + I L + P+R + +
Sbjct: 131 WIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPKN 190
Query: 250 RFQ--IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
F + I F A R E G+ +P + +
Sbjct: 191 TFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEAIGSG---VVPFDNLRFETI 247
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKIS 361
+ + + D D V G K R N +
Sbjct: 248 PDELYRSFDNIRNAVDFG-YATDPLAFVRWHYDKKHNGIYAIDELYGQKISNRQLANWLK 306
Query: 362 GLVEKYRPDAIIIDA 376
+ Y D I DA
Sbjct: 307 D--KSYSNDEIFADA 319
>gi|94990333|ref|YP_598433.1| terminase large subunit [Streptococcus phage 10270.2]
gi|94994256|ref|YP_602354.1| Terminase large subunit [Streptococcus phage 10750.2]
gi|94543841|gb|ABF33889.1| Terminase large subunit [Streptococcus phage 10270.2]
gi|94547764|gb|ABF37810.1| Terminase large subunit [Streptococcus phage 10750.2]
Length = 432
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 85/301 (28%), Gaps = 29/301 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P++ A GRG GK++ A+++ L+ P ++ +C+ ++ L+ +++ ++ +S
Sbjct: 31 PQILNIACKGGRGSGKSSNIAFIISRLIIQYP-VNAVCIRKTDNTLEQSVYEQIKWAISE 89
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ +F+ L +Y + ER + + +
Sbjct: 90 QGLERYFKFNKSPLRITYIP-----------RGNYIVFRGAQNPERIKSLKDSRFPFAIG 138
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIM-----TSNPRRLSGKFYEIFNKPLDDWK 249
I + A + I L + P+R + +
Sbjct: 139 WIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSN 198
Query: 250 RFQ--IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
F + I F A R E G+ +P + +
Sbjct: 199 TFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEAIGSG---VVPFDNLRFERI 255
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKIS 361
+ + + G D D V G + K R ++
Sbjct: 256 TDEQVADFDNIRNGIDYG-YATDPLAFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLT 314
Query: 362 G 362
Sbjct: 315 T 315
>gi|307263070|ref|ZP_07544692.1| Phage terminase, large subunit, PBSX family [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|306871696|gb|EFN03418.1| Phage terminase, large subunit, PBSX family [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 407
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/301 (14%), Positives = 83/301 (27%), Gaps = 28/301 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG KT A + R ++C L+ + EV + +
Sbjct: 27 GGRGSAKTRTFALMTAVWALRRDQAGDSGVILCAREYMNSLEESSLEEVKQAIR------ 80
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
S S + Y ++ + + + +E
Sbjct: 81 -----STSWLEPHFVIGEKFIKTKSGRISYVFAGLRHNLDSIKSKARI-----LLAWVEE 130
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A +V + + E N+ W+ + +R S ++ K +++
Sbjct: 131 AETVSEVAWQKLEPTVREHNSE-IWVTWNPEKRGSATDLRFRRHVPENAKIIEMNYSDNP 189
Query: 260 GIDPSFHEGIIARYGL-DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ +A D R G + +Q E EP PD P
Sbjct: 190 WFPKELEQTRLADKARLDDATYRWIWEGAYLEQSEAQIFRDKYQEL--EFEPNPDFDGPY 247
Query: 319 IMGCDIAEEGGDNTVV--VLRRGPVIEHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIID 375
G D + + G + + +L T + ISG + ++ D
Sbjct: 248 H-GLDFGFANDPTAAIKCWVFDGDLYIEYEAGQVRLELDETASFISGRIPEFEKYISRAD 306
Query: 376 A 376
+
Sbjct: 307 S 307
>gi|331650737|ref|ZP_08351769.1| conserved hypothetical protein [Escherichia coli M605]
gi|331040418|gb|EGI12616.1| conserved hypothetical protein [Escherichia coli M605]
Length = 158
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 36/152 (23%)
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNT 379
D+A+EG D R G ++E++ +WS +D+ + K+ G E+ + D +
Sbjct: 1 MDVADEGRDKNAFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDNLEEFRFDEDGL 60
Query: 380 GARTCDYLEMLGY---------------------------HVYRVLGQKRAVDLEFCRNR 412
GA + V GQ ++ +F N
Sbjct: 61 GAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQAARLNKDFFANA 120
Query: 413 RTELHVKMADWLE-------FASLINHSGLIQ 437
+ + ++ + N +I
Sbjct: 121 KAQSWWRLRKLFQNTWRAVVEGMAYNPDEIIS 152
>gi|50914563|ref|YP_060535.1| Phage terminase [Streptococcus pyogenes MGAS10394]
gi|50903637|gb|AAT87352.1| Phage terminase [Streptococcus pyogenes MGAS10394]
Length = 476
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/365 (12%), Positives = 100/365 (27%), Gaps = 49/365 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ + + A N + + R GKT + + LW + G+ ++
Sbjct: 48 PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 101
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + D + +
Sbjct: 102 TAHRISTSH-ASFEKVKKYLEMSGYVDG--------------EDFISNKAKGQERIEFKA 146
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ R T G +I DEA + +T+ + + + P
Sbjct: 147 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTM 206
Query: 233 LSG-----KFYEIFNKPLDDWKRF---------QIDTRTVEGIDPSFH------EGIIAR 272
+S + + K + + +I+ + I I A
Sbjct: 207 VSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEAE 266
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G +P + S I + + + P + I N
Sbjct: 267 LGEDEIDHNIQRLGYWPSFNQKSVISEKEWAKLKVEQVPELKSK----LFVGIKFGQDGN 322
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V + R + +R I ++ ++ID + ++
Sbjct: 323 NVSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDGASGQELLAQEMK 382
Query: 389 MLGYH 393
G
Sbjct: 383 EQGLK 387
>gi|21910651|ref|NP_664919.1| putative terminase - phage associated [Streptococcus pyogenes
MGAS315]
gi|28876285|ref|NP_795519.1| putative terminase [Streptococcus pyogenes phage 315.3]
gi|28895661|ref|NP_802011.1| hypothetical protein SPs0749 [Streptococcus pyogenes SSI-1]
gi|21904853|gb|AAM79722.1| putative terminase - phage-associated [Streptococcus pyogenes
MGAS315]
gi|28810910|dbj|BAC63844.1| conserved hypothetical protein (phage associated) [Streptococcus
pyogenes SSI-1]
Length = 471
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/365 (12%), Positives = 100/365 (27%), Gaps = 49/365 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ + + A N + + R GKT + + LW + G+ ++
Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + D + +
Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVDG--------------EDFISNKAKGQERIEFKA 141
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ R T G +I DEA + +T+ + + + P
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTM 201
Query: 233 LSG-----KFYEIFNKPLDDWKRF---------QIDTRTVEGIDPSFH------EGIIAR 272
+S + + K + + +I+ + I I A
Sbjct: 202 VSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEAE 261
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G +P + S I + + + P + I N
Sbjct: 262 LGEDEIDHNIQRLGYWPSFNQKSVISEKEWAKLKVEQVPELKSK----LFVGIKFGQDGN 317
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V + R + +R I ++ ++ID + ++
Sbjct: 318 NVSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDGASGQELLAQEMK 377
Query: 389 MLGYH 393
G
Sbjct: 378 EQGLK 382
>gi|313891712|ref|ZP_07825317.1| putative phage terminase, large subunit [Dialister microaerophilus
UPII 345-E]
gi|313119706|gb|EFR42893.1| putative phage terminase, large subunit [Dialister microaerophilus
UPII 345-E]
Length = 574
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/325 (13%), Positives = 96/325 (29%), Gaps = 59/325 (18%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
R +Q + + N + + GR GK+ A L +
Sbjct: 71 RGFQNFIIGSIFGWRKKRSNE--KRFREAYVQMGRQNGKSFFAAELCNDFATFSGYREGR 128
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ C A Q K +W EV+K++ +K FE+ + + + S + + + +
Sbjct: 129 IFCTATKMEQAK-IVWQEVAKFIRA--DKDLFELYEIKEYNSTILSKITNTVIKAIGRD- 184
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ G + +AII++ + D + + + + +T+
Sbjct: 185 -----------TTSADGFRS--VLAIIDEYHAHNTDQMYQLMRKGQIKVDNALTVAITTA 231
Query: 230 PRRLSGKFYEIFN-----------------------KPLDDWKRFQID-------TRTVE 259
L+ Y+ + K D WK +
Sbjct: 232 GFNLNSPCYQQYQFCKKIIEGVLKKDSLFIYIAEMDKDDDIWKPANWAKANPLILWKDDI 291
Query: 260 GIDPSFHEGI-------IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA-LNREPC 311
++ + + G D R + + +FI L + N+
Sbjct: 292 TLNKEMLARMAETAIDAREKGGKDLVDFRTKHLNTWVTYTGGAFIDLAKWKLCETNKTID 351
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVL 336
+G D++ G ++ ++
Sbjct: 352 DMKGKTAYLGIDLSSGGDLTSIALV 376
>gi|145579924|pdb|2O0H|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Atp
gi|145579925|pdb|2O0J|A Chain A, T4 Gp17 Atpase Domain Mutant Complexed With Adp
gi|145579926|pdb|2O0K|A Chain A, T4 Gp17 Atpase Domain Mutant
Length = 385
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/292 (11%), Positives = 79/292 (27%), Gaps = 45/292 (15%)
Query: 10 ETEQKLFDLMWSD--EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
+ + M + + + F + R +Q + ++++ + +
Sbjct: 122 NIKTQWTREMVEEWKKCRDDIVYFAETYCA-ITHIDYGVIKVQLRDYQRDMLKIMSSKRM 180
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
N R +GKTT+ A + + +V LA+ + L
Sbjct: 181 TVCNL------------SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DR 227
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+ + LLP+ P + S+ +D+ +
Sbjct: 228 TKQAIELLPD-----------FLQPGIVEWNKGSIELDNGSSIGAY-------ASSPDAV 269
Query: 188 HNTYGMAIINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNKP 244
I ++ + P+ L I + + R + T N + +
Sbjct: 270 RGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEG 329
Query: 245 LDDWKRFQIDTRTV--------EGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
++ + +V + D + I G R E F
Sbjct: 330 KSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAF 381
>gi|86750600|ref|YP_487096.1| hypothetical protein RPB_3490 [Rhodopseudomonas palustris HaA2]
gi|86573628|gb|ABD08185.1| Protein of unknown function DUF264 [Rhodopseudomonas palustris
HaA2]
Length = 423
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 56/411 (13%), Positives = 111/411 (27%), Gaps = 64/411 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMS------TRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A + + P + + +E ++ + VS L++ P
Sbjct: 40 GGRGAGKTRAGAEWIRCQALGLAPFASEPVARIALVGETEHDVREVMIEGVSGLLAVHPP 99
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ Q + D +
Sbjct: 100 DQRPQWQPSRKRLE------------------WSNGAVAQAFSADDPQSLRGPQFSCAWS 141
Query: 198 DEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE + D ++ G + T P +
Sbjct: 142 DEMAKWRYAQDAFDMLQFGLRLGSQPRQVITTTPRPT----ALLKRLLADPSAVTTHAPT 197
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ P+F EG++ARY + + R E+ G+ + D+ +IE R P
Sbjct: 198 RANALNLAPTFLEGVMARYA-GTRLGRQELDGELIEDRPDALWSRALIESC--RVVDAPP 254
Query: 315 YAPLIMGCDI---AEEGGDNTVVVL-----RRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
L++ D + + D+ +V + + +K L +
Sbjct: 255 LQRLVVAVDPPASSGKRADSCGIVAAGIAENGVTYVLADDSVAAATPTLWASKAIALWRR 314
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM--ADWL 424
DA+I++ N G + + V R E + +
Sbjct: 315 LDADALIVEINQGGEMVKAVINEID---RGVPVTPVRAFRGKW--LRAEPVATLYAQGRV 369
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ A +++ + +G +S D D L++
Sbjct: 370 KHAGCFPA---LEDEMA----DFGTSGL--------SNGRSPDRLDALVWA 405
>gi|21283130|ref|NP_646218.1| terminase large subunit [Staphylococcus aureus subsp. aureus MW2]
gi|66395511|ref|YP_239856.1| ORF003 [Staphylococcus phage 42E]
gi|296276328|ref|ZP_06858835.1| terminase large subunit [Staphylococcus aureus subsp. aureus MR1]
gi|297207827|ref|ZP_06924261.1| terminase large subunit [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911913|ref|ZP_07129356.1| terminase large subunit [Staphylococcus aureus subsp. aureus TCH70]
gi|21204570|dbj|BAB95266.1| terminase large subunit [Staphylococcus aureus subsp. aureus MW2]
gi|62636004|gb|AAX91115.1| ORF003 [Staphylococcus phage 42E]
gi|296887543|gb|EFH26442.1| terminase large subunit [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886159|gb|EFK81361.1| terminase large subunit [Staphylococcus aureus subsp. aureus TCH70]
Length = 563
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/371 (13%), Positives = 93/371 (25%), Gaps = 37/371 (9%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 --------PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVNMVEA------GRDTLDRIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIP 298
+W + + +D E A+ D + F D SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFID 337
Query: 299 LNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTV---VVLRRGPVIEHLFDWSKTDLR 354
+++ + + P +G D++E L G V W
Sbjct: 338 YPTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHKV 397
Query: 355 TTNNKISGLVE 365
+N+ +E
Sbjct: 398 EYSNEKIPYIE 408
>gi|256369024|ref|YP_003106532.1| phage terminase large subunit, putative [Brucella microti CCM 4915]
gi|255999184|gb|ACU47583.1| phage terminase large subunit, putative [Brucella microti CCM 4915]
Length = 384
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 52/414 (12%), Positives = 105/414 (25%), Gaps = 65/414 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V + P + + + + + S LS+
Sbjct: 2 GGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSRL 61
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
V + + + A
Sbjct: 62 -------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAAWC 102
Query: 198 DEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + P + L + R + T+ + +
Sbjct: 103 DELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMRTA 159
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ F + I RY + + R E+ G+ ++ + + IE+ P P
Sbjct: 160 ENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPPL 216
Query: 316 APLIMGCDI---AEEGGDNTVVVLRR-----GPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
A +++ D + + D +V+ + + + L +
Sbjct: 217 ARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYHTH 276
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLE 425
DAI+ + N G L V + + R E + + +
Sbjct: 277 EADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKW-----LRAEPVAALYEQGRVR 331
Query: 426 F-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ G + S +S D D L++ E
Sbjct: 332 HAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 369
>gi|313649747|gb|EFS14171.1| phage terminase large subunit domain protein [Shigella flexneri 2a
str. 2457T]
gi|332761022|gb|EGJ91310.1| phage terminase large subunit domain protein [Shigella flexneri
4343-70]
gi|332761328|gb|EGJ91614.1| phage terminase large subunit domain protein [Shigella flexneri
2747-71]
gi|332763393|gb|EGJ93633.1| phage terminase large subunit domain protein [Shigella flexneri
K-671]
gi|333007918|gb|EGK27394.1| phage terminase large subunit domain protein [Shigella flexneri
K-218]
gi|333021518|gb|EGK40768.1| phage terminase large subunit domain protein [Shigella flexneri
K-304]
Length = 159
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 35/129 (27%), Gaps = 23/129 (17%)
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDA 371
+P +G D+A+ G D V R G V+ +W + + R
Sbjct: 10 EPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREAD 69
Query: 372 IIIDANNTGARTCDYLEMLG----------YHVYRVLGQKRA------------VDLEFC 409
I+ D+ GA + V A + +F
Sbjct: 70 IVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFF 129
Query: 410 RNRRTELHV 418
N + +
Sbjct: 130 ANLKAQAWW 138
>gi|213162921|ref|ZP_03348631.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
Length = 113
Score = 62.6 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 12/109 (11%)
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
I W D R + I L ++Y I ID+ G ++ V +
Sbjct: 14 KFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYLNVKDFFPAVREFV 73
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKS 444
N + L +K D + L + + Q+ +++
Sbjct: 74 YNP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRR 113
>gi|15675368|ref|NP_269542.1| hypothetical protein SPy_1460 [Streptococcus pyogenes M1 GAS]
gi|13622552|gb|AAK34263.1| conserved hypothetical protein - phage associated [Streptococcus
pyogenes M1 GAS]
Length = 471
Score = 62.6 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/365 (12%), Positives = 100/365 (27%), Gaps = 49/365 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ + + A N + + R GKT + + LW + G+ ++
Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVQLWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + D + +
Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVDG--------------EDFISNKAKGQERIEFKA 141
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ R T G +I DEA + +T+ + + + P
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTM 201
Query: 233 LSG-----KFYEIFNKPLDDWKRF---------QIDTRTVEGIDPSFH------EGIIAR 272
+S + + K + + +I+ + I I A
Sbjct: 202 VSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEAE 261
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G +P + S I + + + P + I N
Sbjct: 262 LGEDEIDHNIQRLGYWPSFNQKSVISEKEWAKLKVEQVPELKSK----LFVGIKFGQDGN 317
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V + R + +R I ++ ++ID + ++
Sbjct: 318 NVSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDGASGQELLAQEMK 377
Query: 389 MLGYH 393
G
Sbjct: 378 DQGLK 382
>gi|221196218|ref|ZP_03569265.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
gi|221202891|ref|ZP_03575910.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
gi|221176825|gb|EEE09253.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
gi|221182772|gb|EEE15172.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
Length = 424
Score = 62.6 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 64/238 (26%), Gaps = 31/238 (13%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
+ E + I GR GKTTL G+ V +
Sbjct: 14 QAEIGRAFNESRRVVIRCGRRFGKTTLLERCASKWA--YNGLKVGWFGPTYK-------- 63
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
N ++ ++ P + + + ++S E
Sbjct: 64 ---------LNLPTYKRILRTVQPVVYSKSKIDQVIELNSGGCIEFWTLQDE------DA 108
Query: 187 HHNTYGMAIINDEASGTPD----VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
+ + +I DE S P + I L +R + T FYE
Sbjct: 109 GRSRFYDRVIIDEGSLVPKGLRSIWEQAIAPTLLDRKGHAIMAGTPKGIDPENFFYEACT 168
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
W+ F T + +DP + Y + V + E F + +F
Sbjct: 169 DKTLGWREFHAPTASNPMLDPEAVARLKDEY--PALVYQQEYLADFVDWNGAAFFSEE 224
>gi|56808979|ref|ZP_00366686.1| COG1783: Phage terminase large subunit [Streptococcus pyogenes M49
591]
gi|71910836|ref|YP_282386.1| terminase large subunit [Streptococcus pyogenes MGAS5005]
gi|71853618|gb|AAZ51641.1| terminase large subunit [Streptococcus pyogenes MGAS5005]
Length = 424
Score = 62.6 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 85/301 (28%), Gaps = 29/301 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P++ A GRG GK++ A+++ L+ P ++ +C+ ++ L+ +++ ++ +S
Sbjct: 23 PQILNIACKGGRGSGKSSNIAFIISRLIIQYP-VNAVCIRKTDNTLEQSVYEQIKWAISE 81
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ +F+ L +Y + ER + + +
Sbjct: 82 QGLERYFKFNKSPLRITYIP-----------RGNYIVFRGAQNPERIKSLKDSRFPFAIG 130
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIM-----TSNPRRLSGKFYEIFNKPLDDWK 249
I + A + I L + P+R + +
Sbjct: 131 WIEELAEFKTEDEVKTITNSLLRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSN 190
Query: 250 RFQ--IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
F + I F A R E G+ +P + +
Sbjct: 191 TFVHASTYKDNPFIAKEFIAEAEATRERSERRYRWEYLGEAIGSG---VVPFDNLRFERI 247
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKIS 361
+ + + G D D V G + K R ++
Sbjct: 248 TDEQVADFDNIRNGIDYG-YATDPLAFVRWHYDKKKNGIYAIDEYYGQKISNRQLAKWLT 306
Query: 362 G 362
Sbjct: 307 T 307
>gi|119385627|ref|YP_916682.1| hypothetical protein Pden_2902 [Paracoccus denitrificans PD1222]
gi|119376222|gb|ABL70986.1| protein of unknown function DUF264 [Paracoccus denitrificans
PD1222]
Length = 463
Score = 62.6 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 56/413 (13%), Positives = 110/413 (26%), Gaps = 60/413 (14%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS-TRPGI-----SVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + P V ++ + Q + + S L+
Sbjct: 72 IMGGRGAGKTRAGAEWVRAQVEGATPEAPGRARRVALVSETLDQARDVMVFGESGILASS 131
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P ++ A
Sbjct: 132 PPDRRPVWEAGRRRL------------------VWPNGAVAQLYSAHEPEALRGPQFDAA 173
Query: 196 INDEASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE + + R + ++T+ P+ ++ + +
Sbjct: 174 WVDELAKWKKAEECWDMLQFALRLGEHPQQVVTTTPKNVA--VLKRLLRQSSTVTTHAPT 231
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI-----IEEALNRE 309
+ SF + ARYG + + R E+ G + + + +E A
Sbjct: 232 DANRAYLAESFLAEVQARYG-GTRLGRQELEGLLLEDVEGALWSAGLLERCRVEAAPALS 290
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL-----FDWSKTDLRTTNNKISGLV 364
P + G A+E G V+ GPV + + +
Sbjct: 291 RIVVAVDPAVTGGAAADECGIVVAGVVSEGPVTQWRAYVLEDASVRGGPLDWARAAIAAM 350
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL 424
++ + ++ + N G + + V RA+ + R E + +
Sbjct: 351 GRHGAERLVAEVNQGGDLVESVIRQVDPLVPF-----RALRAGRGKGLRAEPVAALYE-- 403
Query: 425 EFASLINHSGL--IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + GL ++ + G G S D D L++
Sbjct: 404 -QGRVHHLRGLGPLEEQMC----RMTVAGY--------DGKGSPDRLDALVWA 443
>gi|289824955|ref|ZP_06544345.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
Length = 98
Score = 62.6 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 12/107 (11%)
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
I W D R + I L E+Y I ID+ G + ++ V +
Sbjct: 1 FRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFVY 60
Query: 400 QKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
N + L +K D + L + + Q+ +++
Sbjct: 61 NP---------NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 98
>gi|293369707|ref|ZP_06616283.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|292635129|gb|EFF53645.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
Length = 541
Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/342 (14%), Positives = 87/342 (25%), Gaps = 23/342 (6%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVI 111
WQ + + I R GKT L A L L+ + G V+
Sbjct: 73 WQQFIIANILGFYWKGTG--TRRFTSSYIEVSRKQGKTALAAALCLYYLIADGEDGAEVL 130
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
ANS+ Q K + SK+ L K + + + L DSK
Sbjct: 131 LAANSKEQAK-IAFDMCSKFSKGLDTKGKYLTAYRADILFKATNSKLKVLAADDSK---L 186
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-- 229
S D + + +I + I ++ + + T
Sbjct: 187 DGFNASFGLLDEYHAAKTSKVRDVIKSSMGMRENPHLCTITTAGFDKTLPCYQLRTVAIE 246
Query: 230 -----PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA-------RYGLDS 277
DDW+ + + ++ + I D
Sbjct: 247 VLNELKSDDEMFIAIYSLDADDDWRSEKNWMKVAPNLNITVTSKYIKGQVQQAINNPSDE 306
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
R + Q+ +II+ + P +G D+A V L
Sbjct: 307 VGVRTKTLNQWCDSATVWLSDESIIKCTQAVDLSKFRGLPCYVGVDLAATSDLTAVSYLV 366
Query: 338 RGPVIEHLFDWSKTDLRTTNNKI-SGLVEKYRPDAIIIDANN 378
+ +K L + ++ ++
Sbjct: 367 VDSDKYYFKTHYYLPESALTDKTDKELYKLWKRAGLLTVTTG 408
>gi|302382339|ref|YP_003818162.1| phage DNA packaging protein [Brevundimonas subvibrioides ATCC
15264]
gi|302192967|gb|ADL00539.1| phage DNA packaging protein [Brevundimonas subvibrioides ATCC
15264]
Length = 447
Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 60/453 (13%), Positives = 118/453 (26%), Gaps = 75/453 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSV--------------NNPNPEVFKGAI-SAGRGIGKTTLNAW 96
RSWQ + + + + NP E ++ + GRG GKT A+
Sbjct: 24 RSWQER-LAFIATYAPENGWKTIMMAMSKLALHQNPPEEPWRTWVMLGGRGSGKTFAGAF 82
Query: 97 LVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD 156
L ++ R + + + ++ + S ++ ++
Sbjct: 83 W-LHSLAIRNNFTFALVGPALHDVREVMVEGPSGLKAMAEGADRPRWEAGRKRLV----- 136
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGF 214
+ + A DE P+ + +
Sbjct: 137 ------------WPYSGAVAYAFSAEDPDSLRGPQFHAAWADEFCAWRAPERVLSNLRFG 184
Query: 215 LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
L R + ++T+ PR ++ + + TR P + +
Sbjct: 185 LR-RGPDPQLVVTTTPRPIA---ALRTLLAEPGTRTTRGATRDNAANLPPIYLDHLRDLY 240
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTV 333
+ + E+ G + + F +I A R P+ +I+ D GD
Sbjct: 241 AGTRLEAQEMEGLVVEGEGALFRAEDI---AAARGERPERLEKIIVAVDPPVTATGDACG 297
Query: 334 VVLRRGPV-----------IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
+V + ++ D I+ +AN G
Sbjct: 298 IVAAGRSRLRGNADVAIACVLADRSARGLTPLGWARRVVETARLVEADQIVAEANQGGEM 357
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSL 442
L+ G L R E + + + L + L SL
Sbjct: 358 VRTVLQQAGCETRIKLVHATRGKRA-----RAEPVAALYEQGRVVHCGRFNALEEELMSL 412
Query: 443 KSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
S S D +D L++
Sbjct: 413 GSEAP---------------GHSPDRADALVWA 430
>gi|71911002|ref|YP_282552.1| phage terminase [Streptococcus pyogenes MGAS5005]
gi|71853784|gb|AAZ51807.1| phage terminase [Streptococcus pyogenes MGAS5005]
Length = 471
Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/365 (12%), Positives = 100/365 (27%), Gaps = 49/365 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ + + A N + + R GKT + + LW + G+ ++
Sbjct: 43 PWQVNMLIPIMAIDENGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + D + +
Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVDG--------------EDFISNKAKGQERIEFKA 141
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ R T G +I DEA + +T+ + + + P
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTM 201
Query: 233 LSG-----KFYEIFNKPLDDWKRF---------QIDTRTVEGIDPSFH------EGIIAR 272
+S + + K + + +I+ + I I A
Sbjct: 202 VSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEAE 261
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G +P + S I + + + P + I N
Sbjct: 262 LGEDEIDHNIQRLGYWPSFNQKSVISEKEWAKLKVEQVPELKSK----LFVGIKFGQDGN 317
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V + R + +R I ++ ++ID + ++
Sbjct: 318 NVSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDGASGQELLAQEMK 377
Query: 389 MLGYH 393
G
Sbjct: 378 DQGLK 382
>gi|298693633|gb|ADI96855.1| terminase-large subunit [Staphylococcus aureus subsp. aureus ED133]
Length = 563
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 86/354 (24%), Gaps = 37/354 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 --------PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVNMVEA------GRDTLDRIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIP 298
+W + + +D E A+ D + F + SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPDERGDFITKRFNIFANNNEMSFID 337
Query: 299 LNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTV---VVLRRGPVIEHLFDW 348
+++ P +G D++E L G V W
Sbjct: 338 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSW 391
>gi|139473519|ref|YP_001128235.1| phage terminase [Streptococcus pyogenes str. Manfredo]
gi|134271766|emb|CAM29999.1| putative phage terminase [Streptococcus pyogenes str. Manfredo]
Length = 471
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/365 (13%), Positives = 102/365 (27%), Gaps = 49/365 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + + A + + + R GKT + + LW + G+ ++
Sbjct: 43 PWQENMLIPIMAVDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + D + +
Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVDG--------------EDFISNKAKGQERIEFKS 141
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ R T G +I DEA + +T+ + + + P
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTM 201
Query: 233 L-SGKFYEIF-------NKPLDDWKRFQIDTRTVEGIDPSFH------------EGIIAR 272
+ +G +E + NK W + +D S++ I A
Sbjct: 202 VSTGTVFEAYRKDCLKGNKRYSGWAEWSVDEMQPIHDVKSWYIANPSMGFHLNERKIEAE 261
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G +P + S I + + + P + I N
Sbjct: 262 LGEDEIDHNIQRLGYWPSFNQKSVISEKEWAKLKVEQVPELKSK----LFVGIKFGQDGN 317
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V + R + +R I ++ ++ID + ++
Sbjct: 318 NVSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDGASGQELLAQEMK 377
Query: 389 MLGYH 393
G
Sbjct: 378 EQGLK 382
>gi|126735952|ref|ZP_01751696.1| Putative large terminase [Roseobacter sp. CCS2]
gi|126714509|gb|EBA11376.1| Putative large terminase [Roseobacter sp. CCS2]
Length = 408
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 52/420 (12%), Positives = 101/420 (24%), Gaps = 67/420 (15%)
Query: 82 ISAGRGIGKTTLNAWL---VLWLMSTRPGI---SVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A ++ V + + Q + + S LS+
Sbjct: 16 ILGGRGAGKTRAGAEWVRRMVEGALPHAPGAARRVALVGETMDQAREVMVFGDSGILSVC 75
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P E + A+
Sbjct: 76 PPDRRPEWIAGRRLL------------------VWPNGAEAQVFSAHDPDSLRGPQFDAV 117
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + D + L ++ R + T+ PR+ +
Sbjct: 118 WADELAKWRRGDEAWDMLQFALRLGDSPRACV-TTTPRKSQMLSDLLERDTT--VVTHAA 174
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ SF + I RYG S + R E+ G + + +
Sbjct: 175 TQANRANLADSFLKEIEGRYGGTS-LGRQEMEGVMLTEVEGALWSSADLAGCQVG--EVS 231
Query: 314 PYAPLIMGCDIAEEG---GDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKI 360
+++ D D +V+ V+ S
Sbjct: 232 ALDRIVVAIDPPGTSHAGSDQCGIVVAGVVMTGSPHDWRAVVLEDASMSAARPTAWAEAA 291
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ ++ D ++ + N G L + V + R E +
Sbjct: 292 IAAMRRHGADRLVAEVNQGGDMVEAVLRGVDGMVPYRSVHASKGKVA-----RAEPIAAL 346
Query: 421 AD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + ++ + + F +G S D D L++ +
Sbjct: 347 YEQGRVSHVRGLSDLEDQMAQMTSRGF---------------EGKGSPDRVDALVWALYD 391
>gi|323442650|gb|EGB00278.1| terminase large subunit [Staphylococcus aureus O46]
Length = 563
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 86/354 (24%), Gaps = 37/354 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 --------PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIP 298
+W + + +D E A+ D + F + SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPDERGDFITKRFNIFANNNEMSFID 337
Query: 299 LNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTV---VVLRRGPVIEHLFDW 348
+++ P +G D++E L G V W
Sbjct: 338 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSW 391
>gi|299146040|ref|ZP_07039108.1| putative phage terminase, large subunit [Bacteroides sp. 3_1_23]
gi|298516531|gb|EFI40412.1| putative phage terminase, large subunit [Bacteroides sp. 3_1_23]
Length = 540
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/337 (14%), Positives = 86/337 (25%), Gaps = 22/337 (6%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVI 111
WQ + + I R GKT L A L L+ + G V+
Sbjct: 72 WQQFIIANILGFYWKGTG--TRRFTSSYIEVSRKQGKTALAAALCLYYLIADGEDGAEVL 129
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
ANS+ Q K + SK+ L K + + + L DSK
Sbjct: 130 LAANSKEQAK-IAFDMCSKFSKGLDTKGKYLTAYRADILFKATNSKLKVLAADDSK---L 185
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-- 229
S D + + +I + I ++ + + T
Sbjct: 186 DGFNASFGLLDEYHAAKTSKVRDVIKSSMGMRENPHLCTITTAGFDKTLPCYQLRTVAIE 245
Query: 230 -----PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA-------RYGLDS 277
DDW+ + + ++ + I D
Sbjct: 246 VLNELKSDDEMFIAIYSLDADDDWRSEKNWMKVAPNLNVTVTSKYIKGQVQQAINNPSDE 305
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
R + Q+ +II+ + P +G D+A V L
Sbjct: 306 VGVRTKTLNQWCDSATVWLSDESIIKCTQAVDLSKFRGLPCYIGVDLAATSDLTAVSYLV 365
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ +K + K A ++
Sbjct: 366 VDSDKYYFKTHYYLPESALTDKTDKELYKLWKRAGLL 402
>gi|94994695|ref|YP_602793.1| phage terminase [Streptococcus pyogenes MGAS10750]
gi|94548203|gb|ABF38249.1| phage terminase [Streptococcus pyogenes MGAS10750]
Length = 476
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/365 (12%), Positives = 99/365 (27%), Gaps = 49/365 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + + A + + + R GKT + + LW + G+ ++
Sbjct: 48 PWQENMLIPIMAVDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 101
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + D + +
Sbjct: 102 TAHRISTSH-ASFEKVKKYLEMSGYVDG--------------EDFISNKAKGQERIEFKA 146
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ R T G +I DEA + +T+ + + + P
Sbjct: 147 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTM 206
Query: 233 LSG-----KFYEIFNKPLDDWKRF---------QIDTRTVEGIDPSFH------EGIIAR 272
+S + + K + + +I+ + I I A
Sbjct: 207 VSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEAE 266
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G +P + S I + + + P + I N
Sbjct: 267 LGEDEIDHNIQRLGYWPSFNQKSVISEKEWAKLKVEQVPELKSK----LFVGIKFGQDGN 322
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V + R + +R I ++ ++ID + ++
Sbjct: 323 NVSLSIAARTSENKVFVETIDCLSVRNGTQWIINFLKSADIAKVVIDGASGQELLAQEMK 382
Query: 389 MLGYH 393
G
Sbjct: 383 DQGLK 387
>gi|158422729|ref|YP_001524021.1| hypothetical protein AZC_1105 [Azorhizobium caulinodans ORS 571]
gi|158329618|dbj|BAF87103.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 436
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 61/413 (14%), Positives = 114/413 (27%), Gaps = 64/413 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLL 135
+ GRG GKT A V L RP + +A + L+ + VS L++
Sbjct: 51 VLGGRGAGKTRAGAEWVRGLALGRPPFAPAPVGRIALVAETMGDLREVMVEGVSGLLAVH 110
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P + + A
Sbjct: 111 PAAERPRWEPTRRRL------------------VWPNGAVAQGFSAEDPESLRGPQFEAA 152
Query: 196 INDEASGTPDV---INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DE + ++ G + T P L + + L Q
Sbjct: 153 WLDELAKWRRAEAVFDMLQFGLRLGAQPRQMVTTTPRPSALLRRLMADPSTVLSRATTAQ 212
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ P+F + ++ARYG + + R E+ G+ + D+ + RE
Sbjct: 213 NAF----HLAPAFLDTVLARYG-GTRLGRQELEGEIIEDRPDALWTRSA--LEAAREAAA 265
Query: 313 DPYAPLIMGCDI---AEEGGDNTVVVL----RRG-PVIEHLFDWSKTDLRTTNNKISGLV 364
P A +++ D + G D ++ G + + + L
Sbjct: 266 PPLARVVVALDPPASSRAGADACGIIAAGIDGEGLVHVLADATAAGLRPAQWAARAIDLW 325
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD-- 422
+ DA++ + N G L + V V + R E + +
Sbjct: 326 RTHEADAVVAEVNQGGEMVRSVLAEVDASVPVVSVRA---TRGKY--LRAEPVAALYEQG 380
Query: 423 WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ A +++ G + S +S D D L++
Sbjct: 381 RVRHAGAFPA---LEDEMC----DFGPEG---LSS-----GRSPDRLDALVWA 418
>gi|296445591|ref|ZP_06887546.1| protein of unknown function DUF264 [Methylosinus trichosporium
OB3b]
gi|296256836|gb|EFH03908.1| protein of unknown function DUF264 [Methylosinus trichosporium
OB3b]
Length = 442
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 57/412 (13%), Positives = 114/412 (27%), Gaps = 63/412 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLM------STRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I +GRG GKT A V + +TRP + + + ++ + VS L+
Sbjct: 58 ILSGRGAGKTRAGAEWVKGIARGRPQFATRPLSPIALIGETAADVRDVMIEGVSGILAAH 117
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+S + A
Sbjct: 118 SRSERPLWESSRRRLT------------------FDNGVVAQAFSAEDPESLRGPQFAAA 159
Query: 196 INDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DE + + ++ G + T P L + + K
Sbjct: 160 WCDELAKWRYAEETWDMLQFGLRLGDWPRQLVTTTPRPMPLIKRLLTENGVAVTRAKTR- 218
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ PSF E ++++YG + + R E+ G+ +Q D+ +++E A R P
Sbjct: 219 ---ANAANLAPSFLETVLSQYG-GTRLGRQELDGEIVEQRADALWTRDMLERA--RILAP 272
Query: 313 DPYAPLIMGCDI---AEEGGDNTVVVLR----RGPVIEHLFDWSKTDLRTTNNKISGLVE 365
P +++ D + + D +V + L
Sbjct: 273 PPLERIVVAIDPPASSGKRADRCGIVAVGIAQNIVHVLADATVEAARPAQWARAAIALYH 332
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR--TELHVKMADW 423
K DA++ + N G + V ++ +L+ +
Sbjct: 333 KLSADALVAEVNQGGEMVRAVIHEADPSV---PVKEARATRGKYLRAAPAAQLYEQGRAR 389
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ +++ G + S +S D D L++
Sbjct: 390 -HVGAFPA----LEDEMC----DFGPDG---LSS-----GRSPDRLDALVWA 424
>gi|253315476|ref|ZP_04838689.1| terminase large subunit [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
Length = 563
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/371 (13%), Positives = 93/371 (25%), Gaps = 37/371 (9%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 --------PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVNMVEA------GRDTLDRIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIP 298
+W + + +D E A+ D + F D SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFID 337
Query: 299 LNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTVVV---LRRGPVIEHLFDWSKTDLR 354
+++ + + P +G D++E L G V W
Sbjct: 338 YPTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFGLDNGKVAVLTHSWIPKHKV 397
Query: 355 TTNNKISGLVE 365
+N+ +E
Sbjct: 398 EYSNEKIPYIE 408
>gi|294340239|emb|CAZ88611.1| putative Phage terminase large subunit [Thiomonas sp. 3As]
Length = 581
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/361 (12%), Positives = 89/361 (24%), Gaps = 33/361 (9%)
Query: 45 LEGFSAPR--------SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
L P WQ+ + V + I RG GK+ L++
Sbjct: 88 LPHIKGPLAGHPIALAPWQVFILTTVFGW---VNAAGRRRFRRAYIEVPRGNGKSALSSA 144
Query: 97 LVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK-HWFEMQSLSLHPAPW 153
L L++++ G V LA + Q + ++ P F + + +
Sbjct: 145 LALYMLAVDGEMGAEVYSLATTRDQAR-IVFGVAQTMARRSPGFCRRFGVGIGAHNLHVL 203
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG 213
S L + D H ++ + + I
Sbjct: 204 SSASRFEPLSAEGSTL--DGLNIHFGCVDELHAHKTRTVYDVVETATGKRDNSLLWVITT 261
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFN-------KPLDDWKRFQIDTRTVEGI----- 261
++R + + T R L G + DDW +
Sbjct: 262 AGSDRAGICYEVRTGVTRILDGVMEDERQFGIIHGLDEGDDWTHENALIKANPNWGVSID 321
Query: 262 --DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA-LNREPCPDPYAPL 318
+ + + + + + D A + P
Sbjct: 322 ADAVLSLQAKALQLPSAAAAFQTKHLNVWVSADSPWMDMRAWDACADTGLDLDAFEGQPC 381
Query: 319 IMGCDIAEEGG-DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+G D+A + V+V R G +F + + +I+
Sbjct: 382 WIGLDLASKVDIAALVLVFRHGADGFAVFSRHYLPEDAVQGATNSQYAGWARSGRLIETP 441
Query: 378 N 378
Sbjct: 442 G 442
>gi|209885731|ref|YP_002289588.1| phage DNA Packaging Protein [Oligotropha carboxidovorans OM5]
gi|209873927|gb|ACI93723.1| phage DNA Packaging Protein [Oligotropha carboxidovorans OM5]
Length = 434
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 62/441 (14%), Positives = 123/441 (27%), Gaps = 63/441 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV------LWLMSTRP 106
WQ + N P I GRG GKT A + L ++ +P
Sbjct: 24 DWQ--LFAHPHQWPPDLAANDKPWTTWLLI-GGRGAGKTRAGAEWIRAQALGLAPLAQQP 80
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ + +E ++ + VS L++ Q
Sbjct: 81 AGRIALVGETEHDVREVMIEGVSGLLAVHRRDERPMWQPSRRRLE--------------- 125
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP---DVINLGILGFLTERNANRF 223
+ DE + ++ G +
Sbjct: 126 ---WKNGAVAHAFSAEDPESLRGPQFACAWADELAKWRYAEAAFDMLQFGLRLGAQPRQL 182
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
T P L + + + P+F + ++ARY + + R E
Sbjct: 183 ITTTPRPTALIKRLLNDESCVTTRAATR----SNALHLAPTFLQSVMARYA-GTRLGRQE 237
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG---DNTVVVL---- 336
+ G+ ++ D+ +IE R P +++ D G D +V
Sbjct: 238 LDGELIEERPDALWSRGLIETC--RISEAPPLQRIVVAVDPPATSGKRADACGIVAAGVA 295
Query: 337 -RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
G + ++ + L + DA++++ N G + + V
Sbjct: 296 ADNGLYVLADETLTQAAPAAWAARAVALWRRLEADALVVEVNQGGEMVRAVIAQVDPSVP 355
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAI 455
+ R E +A E + H+G+ L+ + +G +
Sbjct: 356 VQPVRALRGKW-----LRAE---PIATLYEQGRVR-HAGVFAALED-EMCDFATSG---L 402
Query: 456 ESKRVKGAKSTDYSDGLMYTF 476
S +S D+ D L++
Sbjct: 403 SS-----GRSPDHLDALVWAL 418
>gi|94970433|ref|YP_592481.1| hypothetical protein Acid345_3406 [Candidatus Koribacter versatilis
Ellin345]
gi|94552483|gb|ABF42407.1| protein of unknown function DUF264 [Candidatus Koribacter
versatilis Ellin345]
Length = 482
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/335 (15%), Positives = 93/335 (27%), Gaps = 42/335 (12%)
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
PDT G+H ++ DE G + + + S P +GKF+E
Sbjct: 123 NPDTVRGYHGD----VVLDEF-GFHRDAKKIYKAAIAIASRGYQLEVISTPNEQAGKFWE 177
Query: 240 I-----------FNKPLDDWKRFQIDTRT----VEGIDPSFHEGIIARYGLDSDVTRVEV 284
I + + + V+ P E + D D + E
Sbjct: 178 IAKAAGVPADGGSERTHWTKGVWSVHWLDIYTAVKEGCPIDVEVMRQACYDD-DTWQQEY 236
Query: 285 CGQFPQQDIDSFIPLNIIEEA------LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
C F + +IP+ +I A L+ P L +G DI + D TV+ +
Sbjct: 237 CCVFLADAQN-YIPMELIIAAESQMASLDARPEDLAGRELYLGMDIGRKK-DRTVIWIDE 294
Query: 339 G-PVIEHLFDWSKTDLRTTNNKISGLVEKYRP-DAIIIDANNTGARTCDYLEMLGYHVYR 396
+ + + ID+ GA+ + LE
Sbjct: 295 KLGDVMITRAVETLERTPFAKQFEQAAAWMPYVRRGCIDSTGIGAQIGEDLERKFGAAKV 354
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFA--SLINHSGLIQNLKSLKSFIVPNTGELA 454
+ + E LE + + + + ++K + TG
Sbjct: 355 EKVEFNIANKETMAGL-------AKRKLEDRQARIPESPSIRRAINAVKRY-TSPTGHFR 406
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
++ R + D + S
Sbjct: 407 FDADRTEAG-HADEFWAFALCLSAAEGGSSPALAS 440
>gi|171779706|ref|ZP_02920662.1| hypothetical protein STRINF_01543 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281808|gb|EDT47242.1| hypothetical protein STRINF_01543 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 470
Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/361 (14%), Positives = 106/361 (29%), Gaps = 47/361 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ ++ V + + + R GKT + L LW + G++++
Sbjct: 42 PWQQNLLKSVMGIEEDGLWTHQKFGYSI----PRRNGKTEIIYMLELWGL--YHGLNILH 95
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + ++ + +V ++L + ++ + L
Sbjct: 96 TAHRISTSHSS-FEKVKRYLEKM------GLEDGKSFNSIRAKGQERIELYETGGVVQYR 148
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR- 231
RT + + F ++ DEA + +T+ + + + P
Sbjct: 149 TRTSNGGLGEGFD--------LLVIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTP 200
Query: 232 ----RLSGKFYEIFNKPLDDWKRF---------QIDTRTVEGIDPSFH------EGIIAR 272
+ K+ E + + +ID I A
Sbjct: 201 VSSGTVFTKYRETCLFGRGKYLGWAEWSVSEEKEIDDIDAWYNSNPSMGFHLNERKIEAE 260
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D V+ G +P + S I AL + P L +G I
Sbjct: 261 LGEDKLDHNVQRLGYWPTYNQKSAISETEW-NALKIDDLPQLQGQLFVG--IKYGQDGTN 317
Query: 333 V---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
V V +R + +R N+ I +++ I+ID + D L+
Sbjct: 318 VALSVAVRTKDKHIFVETVDCQSVRNGNHWIINFLKQADIAQIVIDGASGQKILNDELKD 377
Query: 390 L 390
Sbjct: 378 F 378
>gi|23501474|ref|NP_697601.1| terminase large subunit [Brucella suis 1330]
gi|23347378|gb|AAN29516.1| terminase large subunit, putative [Brucella suis 1330]
Length = 384
Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 52/414 (12%), Positives = 106/414 (25%), Gaps = 65/414 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V + P + + + + + S LS+
Sbjct: 2 GGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSRL 61
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
V + + + A
Sbjct: 62 -------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAAWC 102
Query: 198 DEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + P + L + R + T+ + +
Sbjct: 103 DELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMRTA 159
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ F + I RY + + R E+ G+ ++ + + + IE+ P P
Sbjct: 160 ENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERLGALWSRDRIEQCFEEN--PPPL 216
Query: 316 APLIMGCDI---AEEGGDNTVVVLRR-----GPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
A +++ D + + D +V+ + + + L +
Sbjct: 217 ARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYHTH 276
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLE 425
DAI+ + N G L V + + R E + + +
Sbjct: 277 EADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKW-----LRAEPVAALYEQGRVR 331
Query: 426 F-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ G + S +S D D L++ E
Sbjct: 332 HAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 369
>gi|281418282|ref|ZP_06249302.1| Terminase [Clostridium thermocellum JW20]
gi|281409684|gb|EFB39942.1| Terminase [Clostridium thermocellum JW20]
Length = 549
Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 65/556 (11%), Positives = 141/556 (25%), Gaps = 108/556 (19%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLNSVNNPNP 75
M + F K T E + P WQ + + + +
Sbjct: 29 MAEGSRYNKEAADAAVTFINCLKHTKGEWYGMPFELIDWQEQIVRDIFGILKPNGYR--- 85
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ I + GK+ L A + L+L G V A+ Q + ++ +
Sbjct: 86 QFNTAYIEIPKKQGKSELAAAIALYLTCGDFEHGGEVYGCASDRQQA-SIVFDVAVDMVE 144
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
P LS + + Y + + H
Sbjct: 145 QCPALKSRIKPMLSQKRLVYKP----------------LGSFYQVLSAEAYT-KHGLNVH 187
Query: 194 AIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL------ 245
++ DE P D+ ++ + G R F+++T+ + +E+ K
Sbjct: 188 GVVFDELHAQPNRDLYDVMLHGSGDARKQPLFFLITTAGTDRNSICWEVHQKAEDILQGR 247
Query: 246 ----------------DDWKRFQIDTRTVEGID-PSFHEGII------ARYGLDSDVTRV 282
DDW ++ + + E + + + ++ R
Sbjct: 248 KIDPTFYPVIYSAADTDDWTSEKVWRKVNPSLGITVDIEKLRVACENAKQNPAEENLFRQ 307
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG------------- 329
Q+ +Q + + A + G D++
Sbjct: 308 LRLNQWVKQSVRWMPMDKWDKCAFPVDAEKLRGRTCYGGLDLSSTTDITAFVLVFPPLDE 367
Query: 330 -----------------------DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
D+ + + + + I L K
Sbjct: 368 SDKYQILPFFWIPEENIDQRVRRDHVPYDVWERQGFLYTTEGNVVHYGFIETFIEELGMK 427
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF 426
Y I D + LE LG+ V + + + + + + + +
Sbjct: 428 YNIKEIAFDRWGA-IQMTQNLEALGFTVVPFGQGFKDMSPPT----KELMKLTLEERIAH 482
Query: 427 ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
+++ + G + + K + D + L+ R+
Sbjct: 483 GGNP----VLRWMMDNIYVKTDPAGNIK--PDKEKSTERIDGAVALIMAL----DRALRH 532
Query: 487 FGRCPSYQYEGVDLLI 502
G Y+ +LI
Sbjct: 533 DGESLGSVYDKRGILI 548
>gi|154487553|ref|ZP_02028960.1| hypothetical protein BIFADO_01408 [Bifidobacterium adolescentis
L2-32]
gi|154084071|gb|EDN83116.1| hypothetical protein BIFADO_01408 [Bifidobacterium adolescentis
L2-32]
Length = 537
Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 55/400 (13%), Positives = 111/400 (27%), Gaps = 60/400 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR------- 105
WQ + H L + + + K + R GKTTL L W +
Sbjct: 56 PWQCWLL----VHALELLEDGSYRFRKVIVLVARQNGKTTLMGVLAAWWLFVDSNKHPDR 111
Query: 106 -PGISVICL--ANSETQLKTTLWAEVSKWLSLLPNKHWF-----EMQSLSLHPAPWYSDV 157
P + + + A + K +++V +W + P + +
Sbjct: 112 VPPVKFLVVGAAQTLDNAK-GPYSQVKEWCNPRPETDEESELVVPELADMTQKFVNTNGE 170
Query: 158 LHCSLGIDSKHYSTMCRTYSEERPDT--FVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
L +K+ + + F + N + T V + + G
Sbjct: 171 EAIVLKSKAKYIVRADKNIRAKSAARVIFDELREQHNDDGWNAVSQTTKAVWSSQLWGIS 230
Query: 216 TERNANRFWIM--TSNPRRLSGKFYEIFNKPLD------------DWKRFQIDTRTVEGI 261
+ + R+L + + +D + F+ +
Sbjct: 231 NAGDYRSVALRKQVDKGRKLVDAWKQYVADGVDAAEAFANGEQDGSFGYFEWSAPDKCPV 290
Query: 262 DPSFHEGIIARY----------------GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
D + G+ R EV Q+ DI +I +
Sbjct: 291 DDADAIRQANPSLGYGPMTVASVRSDIDGMTEAAFRTEVLCQWVTADIVPYINPKLWAYG 350
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE---HLFDWSKTDLRTTNNKISG 362
+ C +++ D + T V G + H+ ++ D
Sbjct: 351 TDNASCIPADNRVVLAVDTS--ADRQTTYVAAAGLRADGLPHVELIARRDGMLWVPHFLD 408
Query: 363 LVEKYRPDAIIIDANNTGARTCDY---LEMLGYHVYRVLG 399
L+ + P I + G D+ L G++V+ + G
Sbjct: 409 LLRESWPSICEIAVQSKGCPAVDFIDPLTEKGWNVHLIEG 448
>gi|328552921|gb|AEB23413.1| putative helicase, ATP-dependent, intein-containing [Bacillus
amyloliquefaciens TA208]
Length = 1021
Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/430 (11%), Positives = 111/430 (25%), Gaps = 103/430 (23%)
Query: 92 TLNAWLVLWL-MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHP 150
TL +V + P +++ A+++ W E + + ++ +
Sbjct: 540 TLTQIMVAYHTAICFPNVTLAITASTKESAVKI-WKEKHEEILR-----FYPSIKDEIKS 593
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINL 209
+ D + + G G +E++ D+ +
Sbjct: 594 ENFSKDSGRVEFQNG-------AIIDNLANAQSSKGLRRRRGSL---EESALIDKDLYDD 643
Query: 210 GILGFLTERNANRFWIMTSNP-RRLSGKFYEIFNKPLDDWK----------------RFQ 252
I + +F K D+++ F
Sbjct: 644 AIEPIFNIPRTTMTGEIDPAELNGQINRFSTSGYKNSDEYEKILTMVKETGDLKGSFVFG 703
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
D R I + R + + I ++ + +A P
Sbjct: 704 SDWRIPIHFGRQKMSVINKARQGNVTRFRQNYLCDWIGASDGALINISKLIKARTITH-P 762
Query: 313 DPYAP-----------LIMGCDIAEE---GGDNTVVVL-----------RRGPVIEHLFD 347
+ P ++G D+A + T +V+ R+ V+ +
Sbjct: 763 ELSCPRDKNKNFLLHEYVIGVDVARSAAESNNKTAIVVLKIIRNSNNLIRQVQVVNIIEP 822
Query: 348 WSKTDLRTTNNKISGLVEKY---------RPDAIIIDANNTGARTCDYL----------E 388
+ + + + + + Y R A+I+D N G D L E
Sbjct: 823 PNGLSFKEQSIMVKRVFKNYGGNQDTSLSRVKAVIVDGNGVGGGLIDRLLEDVTDPETNE 882
Query: 389 MLGYHVYRVLGQKRAV---DLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSF 445
LG + ++ E N +++ + +I
Sbjct: 883 ELGC-WATINTDQKPDVPNSPEIVYNLKSQG--------------INQDIITQFL----- 922
Query: 446 IVPNTGELAI 455
+G+L +
Sbjct: 923 DYVESGKLKL 932
>gi|56697127|ref|YP_167490.1| terminase, large subunit, putative [Ruegeria pomeroyi DSS-3]
gi|56678864|gb|AAV95530.1| terminase, large subunit, putative [Ruegeria pomeroyi DSS-3]
Length = 408
Score = 61.8 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/420 (12%), Positives = 104/420 (24%), Gaps = 67/420 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + V + + Q++ + S L+
Sbjct: 16 ILGGRGAGKTRAGAEWVRARVEGSRPLDAGRARRVALVGETYDQVRDVMVFGESGILACS 75
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P ++ G A
Sbjct: 76 PPDRRPNWKASERKL------------------IWPNGAEAQAFSAQDPEGLRGPQFDAA 117
Query: 196 INDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + L +T+ PR + + +
Sbjct: 118 WVDELAKWKKAGETWDMLQFALRL-GERPQVCVTTTPRNVK--LLKDLLAAPSTVQTHAP 174
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ SF E + ARY + + R E+ G + +++ A R
Sbjct: 175 TEANRANLAESFLEEVRARYA-GTRLGRQELDGVLLADAEGALWTAEMLDRA--RTSSVP 231
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKI 360
+++ D GD +V+ + T
Sbjct: 232 ELDRVVVALDPSVSGGASGDACGMVVVGAQMQGPPQDWRAWVLADRTVQGAGPTTWAKAA 291
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
++ + + ++ + N G + L + V + R E +
Sbjct: 292 IAAMDAFGAERLVAEVNQGGQLVEEVLRQVDPLVPFKAVHAARGKVA-----RAEPVAAL 346
Query: 421 ADWLEFASLINHSGLIQNL--KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + + L + + + + + +G S D D L++ E
Sbjct: 347 YEQERVRHVAGLTALEEQMGQMTARGY---------------EGQGSPDRVDALVWALHE 391
>gi|213021836|ref|ZP_03336283.1| phage large terminase subunit GpP [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 103
Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIES 457
A D+ + +T + +K D + L + + + +++ + + E+
Sbjct: 4 SSARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSATYEA 63
Query: 458 KRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
R + A D + M+ P + +
Sbjct: 64 SRSEEASHADLAWATMHALLNEPLTAGIST 93
>gi|306838714|ref|ZP_07471549.1| Phage DNA packaging protein [Brucella sp. NF 2653]
gi|306406201|gb|EFM62445.1| Phage DNA packaging protein [Brucella sp. NF 2653]
Length = 430
Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 55/445 (12%), Positives = 113/445 (25%), Gaps = 68/445 (15%)
Query: 56 LEFMEVVDAHCLNSVNNPNPE---VFKGAISAGRGIGKTTLNAWLVLWLMSTRPG----- 107
+ + D + + + P I GRG GKT A V + P
Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76
Query: 108 -ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ + + + + S LS+ V
Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-------------------VRPRYEASRR 117
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFW 224
+ + + A DE + P + L + R
Sbjct: 118 RLIWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ T+ + + + F + I RY + + R E+
Sbjct: 178 VTTTP---RAVPLLKALLTDRTVSMTHMRTVENAGNLAEGFMQTIARRYA-GTRLGRQEL 233
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLRR--- 338
G+ ++ + + IE+ P P A +++ D + + D +V+
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVVAGIDA 291
Query: 339 --GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ + + L + DAI+ + N G L V
Sbjct: 292 EGVGHVLADESMTMAKPHQWARRAIALYHTHEADAIVAEVNKGGEMVAAVLAAEDSSVPV 351
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMAD--WLEF-ASLINHSGLIQNLKSLKSFIVPNTGEL 453
+ + R E + + + +++ G
Sbjct: 352 LKRRASRGKW-----LRAEPVAALYEQGRVRHAGRFPA----LEDEMC----DFAPEG-- 396
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAE 478
+ S +S D D L++ E
Sbjct: 397 -LSS-----GRSPDRLDALVWALGE 415
>gi|145632703|ref|ZP_01788437.1| putative terminase of prophage [Haemophilus influenzae 3655]
gi|144986898|gb|EDJ93450.1| putative terminase of prophage [Haemophilus influenzae 3655]
Length = 555
Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/422 (10%), Positives = 96/422 (22%), Gaps = 34/422 (8%)
Query: 17 DLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPE 76
D + F F + WQ+ + +
Sbjct: 37 DYFFDQSAVEKFIAFSKLCPHVKGHLRGEPIILS--DWQVFLFANILGFKRKDTG--LRK 92
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL---- 132
+ R K+T+ A L W + G I A ++ + +
Sbjct: 93 YRSAYVQVARKNAKSTVAAVLANWFLVMEGGQQDIYTAAVSRDQARIVFDDARQMCLLSP 152
Query: 133 ----SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTF 184
L +H + P + S +++ +
Sbjct: 153 LLKKRLNIQQHKLINPKNNSIMRPLAAKSSTIEGTNPSLAIVDEYHLHTDNSVYSALELG 212
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G + I S + + I+ N + S
Sbjct: 213 QGARPEGLLFAITTAGSNV--------ISACKQHYDYCAQILEGNEQNDSLFVLIFELDE 264
Query: 245 LDDWKRFQIDTRTVEGIDP-----SFHEGIIARYGLDSDVTR--VEVCGQFPQQDIDSFI 297
++ + + + I F I G+ S+ + + Q
Sbjct: 265 ENEIDKQENWIKANPNIGKSIPYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLG 324
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT-VVVLRRGPVIEHL--FDWSKTDLR 354
N + + +G D++ + +G + + + L
Sbjct: 325 EGNWAQCERQYTESDLLHQDCYLGLDLSSTNDLTSLCYTFPQGKKVRLVTRHYIPEFQLN 384
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRT 414
NK + + +I + + R + D+ + RT
Sbjct: 385 NVANKNRAMYRNWVRSGWLIATEGDCIDYDKIRDDILKDAQRFNIKMIGFDVWNATHLRT 444
Query: 415 EL 416
+L
Sbjct: 445 QL 446
>gi|66396341|ref|YP_240671.1| ORF008 [Staphylococcus phage 88]
gi|66396415|ref|YP_240743.1| ORF009 [Staphylococcus phage 92]
gi|62636756|gb|AAX91867.1| ORF008 [Staphylococcus phage 88]
gi|62636829|gb|AAX91940.1| ORF009 [Staphylococcus phage 92]
Length = 421
Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 23/270 (8%)
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
EV GRG GK++ + ++ + R ++ + + ++ L T+++ ++ +
Sbjct: 26 EVLNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQ 84
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
H F+++ + + ++ + + ER + + +A
Sbjct: 85 KVSHLFKVKVSPM---------EITYIPRGNRIIFRGAQ--NPERLKSLKDSRFPFSIAW 133
Query: 196 INDEASGTPDVINLGILGFLTERN-----ANRFWIMTSNPRRLSGKFYEIFNK--PLDDW 248
I + A + I L +F+ + P+R + + D+
Sbjct: 134 IEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNT 193
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
I F + + + R E G+ +P N +
Sbjct: 194 YVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNNLRIEEIP 250
Query: 309 EPCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
+ D + + D D V
Sbjct: 251 QRQYDTFDNIRNAVDFG-YATDPLAFVRWH 279
>gi|85059534|ref|YP_455236.1| putative phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84780054|dbj|BAE74831.1| putative phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 240
Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 56/214 (26%), Gaps = 20/214 (9%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P +K A GRG GK+ A L + R +VI A E+ + +S
Sbjct: 11 KPAPYKVA-YGGRGRGKSYFFAELAIE--VARRTKTVILCA-----------RELQESIS 56
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+K E + A + + + + + + G
Sbjct: 57 DSVHKLLRETIDRLGYNAEFEVQKNTIIHLATGTTFIFLGVKNNVTKVKSAQGV-----G 111
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+EA +L + WI + L + P +
Sbjct: 112 ICWVEEAEAVTKDSWDVLLPSIRGDKNAEVWISFNPKNILDDTYQRFIVNPPKGAIILKA 171
Query: 254 DTRTVEGI-DPSFHEGIIARYGLDSDVTRVEVCG 286
+ D + + + D R G
Sbjct: 172 NYSDNPYFHDSPLPQQMEECKERNVDRCRCRREG 205
>gi|261347085|ref|ZP_05974729.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
gi|282564815|gb|EFB70350.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
Length = 102
Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 3/93 (3%)
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGEL 453
+ A + + + L +K D + L + + Q+ +++ +
Sbjct: 1 MNFFPAAKEFIYNPALKNALVLKAYDVISHDRLEYDAGCNDITQSFMAIRRATTASGNRP 60
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
E+ R + A D + M+ P +
Sbjct: 61 TYEADRSEEASHADLAWATMHALYNEPITGENS 93
>gi|254709718|ref|ZP_05171529.1| Phage DNA packaging protein [Brucella pinnipedialis B2/94]
gi|256031209|ref|ZP_05444823.1| Phage DNA packaging protein [Brucella pinnipedialis M292/94/1]
Length = 411
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 53/416 (12%), Positives = 106/416 (25%), Gaps = 65/416 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + P + + + + + S LS+
Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
V + + + A
Sbjct: 87 RL-------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAA 127
Query: 196 INDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + P + L + R + T+ + +
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMR 184
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ F + I RY + + R E+ G+ ++ + + IE+ P
Sbjct: 185 TAENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVLRR-----GPVIEHLFDWSKTDLRTTNNKISGLVE 365
P A +++ D + + D +V+ + + + L
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYH 301
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--W 423
+ DAI+ + N G L V + + R E + +
Sbjct: 302 THEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKW-----LRAEPVAALYEQGR 356
Query: 424 LEF-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ +++ G + S +S D D L++ E
Sbjct: 357 VRHAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 396
>gi|251782540|ref|YP_002996842.1| phage terminase [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242391169|dbj|BAH81628.1| phage terminase [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 476
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/365 (12%), Positives = 99/365 (27%), Gaps = 49/365 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + + A + + + R GKT + + LW + G+ ++
Sbjct: 48 PWQENMLIPIMAVDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 101
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + D + +
Sbjct: 102 TAHRISTSH-ASFEKVKKYLEMSGYVDG--------------EDFISNKAKGQERIEFKA 146
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ R T G +I DEA + +T+ + + + P
Sbjct: 147 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTM 206
Query: 233 LSG-----KFYEIFNKPLDDWKRF---------QIDTRTVEGIDPSFH------EGIIAR 272
+S + + K + + +I+ + I I A
Sbjct: 207 VSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYIANPSMGFHLNERKIEAE 266
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G +P + S I + + + P + I N
Sbjct: 267 LGEDEIDHNIQRLGYWPSFNQKSVISEKEWAKLKVEQVPELKSK----LFVGIKFGQDGN 322
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V + R + +R I ++ ++ID + ++
Sbjct: 323 NVSLSIAARTSENKVFVEVIDCLSVRNGTQWIINFLKSADIAKVVIDGASGQELLAQEMK 382
Query: 389 MLGYH 393
G
Sbjct: 383 EQGLK 387
>gi|312262635|gb|ADQ52930.1| gp17 terminase DNA packaging enzyme large subunit [Aeromonas phage
PX29]
Length = 406
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/255 (15%), Positives = 72/255 (28%), Gaps = 47/255 (18%)
Query: 14 KLFDLMWSD--EIKLSFSNFVLHFF-----PWGEKGTPLEGFSAPRSWQLEFMEVVDAHC 66
K M + + F + WG L R +Q + + ++
Sbjct: 122 KWTREMVEEWKRCRDDIVYFAETYCSIIHIDWGVIKVQL------RDYQKDMLRIMATER 175
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
++ N P R +GKTT A + + +V LA+ K L
Sbjct: 176 MSIHNLP------------RQLGKTTATAIFLTHFVVFNEAKAVGVLAHKGDMSKEVLER 223
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
+ + LLP+ P + ++ +++ +
Sbjct: 224 T-KQSIELLPD-----------FLQPGIVEWNKGNIELENGCSIGAY-------ASSPDA 264
Query: 187 HHNTYGMAIINDEASGTP--DVINLGILGFL-TERNANRFWIMTSNPRRLSGKFYEIFNK 243
I DEA+ D IL + + R + T N +E+
Sbjct: 265 VRGNSFALIYLDEAAFIENFDDTWKAILPVISSGRKSRIILTSTPNGINHWYDLWEVSIN 324
Query: 244 PLDDWKRFQIDTRTV 258
+K + TV
Sbjct: 325 SDKGFKPYTTTWITV 339
>gi|76788305|ref|YP_329267.1| prophage LambdaSa03, terminase, large subunit [Streptococcus
agalactiae A909]
gi|76563362|gb|ABA45946.1| prophage LambdaSa03, terminase, large subunit, putative
[Streptococcus agalactiae A909]
Length = 471
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/366 (13%), Positives = 100/366 (27%), Gaps = 53/366 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ + + A +++ + R GKT + L LW + G+ ++
Sbjct: 44 WQENMLIPMMAINEDNLWVHQKYGYAI----PRRNGKTEVVYILELWAL--HKGLKILHT 97
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A + + FE L + + S +
Sbjct: 98 A-----------------HRISTSHSSFEKVKKYLEMSGYVDGEDFISNKAKGQERIEFK 140
Query: 174 RTYS--EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ S + R T G +I DEA + +T+ + + + P
Sbjct: 141 SSGSVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPT 200
Query: 232 RL-SGKFYEIFNKP-------LDDWKRFQIDTRTVEGIDPSFH------------EGIIA 271
+ +G +E + K W + +D S++ I A
Sbjct: 201 MVSTGTVFESYRKECLKGDRRYSGWAEWSVDEMQPIHDVKSWYVANPSMGYHLNERKIEA 260
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D ++ G +P + S I + + + P + I
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEWAKLKVEQVPELKSK----LFVGIKFGQDG 316
Query: 331 NTV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
N V + R + +R I ++ ++ID + +
Sbjct: 317 NNVSLSIAARASENKVFVEAIDCLSIRNGTQWIINFLKSADIAKVVIDGASGQELLAQEM 376
Query: 388 EMLGYH 393
G
Sbjct: 377 REHGLK 382
>gi|88195251|ref|YP_500054.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|87202809|gb|ABD30619.1| phage terminase, large subunit, putative [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|329729404|gb|EGG65809.1| putative phage terminase, large subunit [Staphylococcus aureus
subsp. aureus 21189]
Length = 563
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 48/371 (12%), Positives = 92/371 (24%), Gaps = 37/371 (9%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 --------PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVNMVEA------GRDTLDRIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIP 298
+W + + + E A+ D + F D SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSIDLAEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFID 337
Query: 299 LNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTV---VVLRRGPVIEHLFDWSKTDLR 354
+++ + + P +G D++E L G V W
Sbjct: 338 YPTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHKV 397
Query: 355 TTNNKISGLVE 365
+N+ +E
Sbjct: 398 EYSNEKIPYIE 408
>gi|218905500|ref|YP_002453334.1| putative phage terminase, large subunit [Bacillus cereus AH820]
gi|218536827|gb|ACK89225.1| putative phage terminase, large subunit [Bacillus cereus AH820]
Length = 565
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/306 (13%), Positives = 80/306 (26%), Gaps = 40/306 (13%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVI 111
WQ + + + I R GK+TL + + L+L G V
Sbjct: 89 WQKFNVGSLFGWVEKETG--YRRFLEALIMIARKNGKSTLASAIALYLFMKDNEYGARVY 146
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPN--------KHWFEMQSLSLHPAPWYSDVLHCSLG 163
LAN Q K ++ E + + P + +++ P SD
Sbjct: 147 TLANKRDQAK-LVFEEAKRMVKQSPALRRRVRIIRDKLYYNAMNSELEPLASDSKKQDGL 205
Query: 164 IDSKHYSTMCRTYSEER----PDTFVGHHNTYGMAIINDEASGTP---DVINLGILGFLT 216
Y + + + + I L
Sbjct: 206 NTHGAIFDEIHEYKDRKLINVIQSSYDARTQPLILHITTAGFVLDGPLMKFYEVADKMLN 265
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF-HEGIIARYGL 275
E + + P DDWK + + +D + E + Y
Sbjct: 266 ETVEHDRFFAFIAEI-----------DPEDDWKDEECWVKANPNLDVTITLEKLREAYKT 314
Query: 276 -----DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMGCDIAEEG 328
+ + + + F ++I++ +E + I G D++E
Sbjct: 315 YVLNNEVNEFKTKRLNLFVNAAEKWL-EWDVIKKNYEKEYDLEVLEGCMCIGGADLSETT 373
Query: 329 GDNTVV 334
+
Sbjct: 374 DLTSSF 379
>gi|161618560|ref|YP_001592447.1| hypothetical protein BCAN_A0599 [Brucella canis ATCC 23365]
gi|225852113|ref|YP_002732346.1| hypothetical protein BMEA_A0624 [Brucella melitensis ATCC 23457]
gi|254701380|ref|ZP_05163208.1| Phage DNA packaging protein [Brucella suis bv. 5 str. 513]
gi|254703925|ref|ZP_05165753.1| Phage DNA packaging protein [Brucella suis bv. 3 str. 686]
gi|254713724|ref|ZP_05175535.1| Phage DNA packaging protein [Brucella ceti M644/93/1]
gi|254717218|ref|ZP_05179029.1| Phage DNA packaging protein [Brucella ceti M13/05/1]
gi|256044294|ref|ZP_05447198.1| Phage DNA packaging protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256060717|ref|ZP_05450881.1| Phage DNA packaging protein [Brucella neotomae 5K33]
gi|256113127|ref|ZP_05454004.1| Phage DNA packaging protein [Brucella melitensis bv. 3 str. Ether]
gi|256159312|ref|ZP_05457102.1| Phage DNA packaging protein [Brucella ceti M490/95/1]
gi|256254617|ref|ZP_05460153.1| Phage DNA packaging protein [Brucella ceti B1/94]
gi|161335371|gb|ABX61676.1| protein of unknown function DUF264 [Brucella canis ATCC 23365]
gi|225640478|gb|ACO00392.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|326408609|gb|ADZ65674.1| Phage DNA packaging protein [Brucella melitensis M28]
gi|326538330|gb|ADZ86545.1| conserved hypothetical protein [Brucella melitensis M5-90]
Length = 411
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 53/416 (12%), Positives = 106/416 (25%), Gaps = 65/416 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + P + + + + + S LS+
Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
V + + + A
Sbjct: 87 RL-------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAA 127
Query: 196 INDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + P + L + R + T+ + +
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMR 184
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ F + I RY + + R E+ G+ ++ + + IE+ P
Sbjct: 185 TAENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVLRR-----GPVIEHLFDWSKTDLRTTNNKISGLVE 365
P A +++ D + + D +V+ + + + L
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYH 301
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--W 423
+ DAI+ + N G L V + + R E + +
Sbjct: 302 THEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKW-----LRAEPVAALYEQGR 356
Query: 424 LEF-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ +++ G + S +S D D L++ E
Sbjct: 357 VRHAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 396
>gi|328544550|ref|YP_004304659.1| phage DNA Packaging Protein [polymorphum gilvum SL003B-26A1]
gi|326414292|gb|ADZ71355.1| Phage DNA Packaging Protein [Polymorphum gilvum SL003B-26A1]
Length = 413
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 52/421 (12%), Positives = 105/421 (24%), Gaps = 61/421 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRP------GISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A + + + + ++ + VS L++ P
Sbjct: 30 GGRGAGKTRAGAEWIRARALGHRWCEAAVAGRIALVGETFADVREVMIEGVSGLLAVHPR 89
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ +
Sbjct: 90 HERPAWNPSRRRLE------------------WPNGAVAQAFSAEDPEALRGPQFDIAWS 131
Query: 198 DEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + + + L R + T+ +
Sbjct: 132 DELAKWRHAEETFDMLQFGLRLGARPRQLVTTTP---RPVPLLKRLIDLPGTALTHAPTR 188
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ P F E I+ARY + + R E+ G+ + D+ + +E + PD
Sbjct: 189 ANALFLAPGFLERIVARYQ-GTRLGRQELDGELIEDRPDALWRRDALEACRV-DRAPDAL 246
Query: 316 APLIMGCDI----AEEGGDNTVVVLRRGP----VIEHLFDWSKTDLRTTNNKISGLVEKY 367
+++ D ++V G + L Y
Sbjct: 247 VRIVVAVDPPATATRRSDGCGLIVAGLGADGVAYVLADRSRRPARPADWAGAAVALWHHY 306
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLE 425
R D ++ + N G + + V + L R E + D +
Sbjct: 307 RADCLVAEVNQGGDMVRAVIAGIDPAVPVRCVRATRGKL-----LRAEPVAMLYDQGRVR 361
Query: 426 FASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDM 485
+ +++ + G + S +S D D L++ +E P
Sbjct: 362 HVGALPE---LEDEMA----DFGPGG---LSS-----GRSPDRLDALVWALSELMPAGRG 406
Query: 486 D 486
+
Sbjct: 407 E 407
>gi|149913871|ref|ZP_01902403.1| hypothetical protein RAZWK3B_17748 [Roseobacter sp. AzwK-3b]
gi|149812155|gb|EDM71986.1| hypothetical protein RAZWK3B_17748 [Roseobacter sp. AzwK-3b]
Length = 419
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 53/435 (12%), Positives = 105/435 (24%), Gaps = 63/435 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-TRPGISVIC-----LANSET 118
L P + I GRG GKT A V + RP +C + +
Sbjct: 10 WALEHQVPPEGDWRNWVILGGRGAGKTRAGAEWVRAQVEGARPLSEGLCRRMALVGETID 69
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
Q++ + S ++ P + Q+
Sbjct: 70 QVREVMIFGESGIMACSPPDRRPDWQATRKRL------------------VWPNGAVAQA 111
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
DE + + + R + + + R G
Sbjct: 112 FSAHEPEALRGPQFDGAWVDEMAKWKKARDTWDMLQFGLRLGDHPQVCITTTPRNVGVLK 171
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
++ T + + + R E+ G + +
Sbjct: 172 DLLE--QKSTVVTSAPTEANRAFLAQSFLEEVRARYAGTRLGRQELDGVLLSEAEGALWT 229
Query: 299 LNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVL----------RRGPVIEHL 345
+ IE R +++ D G D +V+ +
Sbjct: 230 NSGIEAC--RVDNLPELDRIVVAIDPPVTGRAGSDECGIVVAGAVTRGPVQDWRAYVLAD 287
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+ N +E + D ++ + N G + + V R
Sbjct: 288 CSVGAARPLSWANAAISAMEHWGADRLVAEVNQGGDMVAQVIRQVDPLVPVKSVHARRGK 347
Query: 406 LEFCRNRRTELHVKMADWLEFASLINHSGL--IQNLKSLKSFIVPNTGELAIESKRVKGA 463
+ R E + + + + GL +++ + G E K
Sbjct: 348 VT-----RAEPVAALYE---QGRVHHLRGLGTLEDQMCA----MTARG---FEGK----- 387
Query: 464 KSTDYSDGLMYTFAE 478
S D D L++ E
Sbjct: 388 GSPDRVDALVWALTE 402
>gi|126728773|ref|ZP_01744588.1| terminase, large subunit, putative [Sagittula stellata E-37]
gi|126710703|gb|EBA09754.1| terminase, large subunit, putative [Sagittula stellata E-37]
Length = 432
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/423 (11%), Positives = 110/423 (26%), Gaps = 60/423 (14%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS----TRPG--ISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + +PG + + + Q + + S L+
Sbjct: 41 ILGGRGAGKTRAGAEWVRAQVEGARPMKPGRCKRMAIIGETFDQAREVMVFGDSGILACS 100
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P Q+
Sbjct: 101 PPDRRPLWQASRKCL------------------VWPNGAEAMIYSASEPEALRGPQFDGA 142
Query: 196 INDEASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE + + + R + +T+ PR + +
Sbjct: 143 WVDELAKWKRGQDTWDMLQFGLRLGDHPQVCVTTTPRNVG--VLKALLALESTVTTHAPT 200
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ SF + + +RY +S + E+ G + + ++++ R
Sbjct: 201 EVNAAHLARSFLDEVRSRYA-NSSLGMQELDGLLLDEVDGAMWTRDLLD--AQRCGMLPA 257
Query: 315 YAPLIMGCDIA---EEGGDNTVVVL------RRG---PVIEHLFDWSKTDLRTTNNKISG 362
+++ D + D +V+ + G +
Sbjct: 258 LDRIVVAVDPPAGDGKRSDACGIVVAGAARGKDGLLTAYVLEDASVQGRRPAEWAACAVE 317
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
++ D ++ + N GA + L + ++ R E + +
Sbjct: 318 AARRWNADRVVAEVNQGGAMVENVLRQVDPYLPVTRVHACDGKA-----VRAEPVAALYE 372
Query: 423 WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPR 482
+ + +GL +L++ + P + G S D D L++ +
Sbjct: 373 ---QGRVFHAAGL-ADLEAQLCLMTPMGFQ---------GGGSPDRVDALVWAVSHLIVS 419
Query: 483 SDM 485
Sbjct: 420 GRP 422
>gi|291517493|emb|CBK71109.1| Phage terminase large subunit [Bifidobacterium longum subsp. longum
F8]
Length = 477
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 46/369 (12%), Positives = 89/369 (24%), Gaps = 44/369 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISV 110
WQ + ++ A + + + + R GKT W+ + + PG+ +
Sbjct: 37 DVWQRQINRIILA-----KSADGFWSARNTVLSIPRQTGKTYDIGWVAIHRAARTPGMRI 91
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ A + +K T + + L + SL +
Sbjct: 92 VWTAQHFSVIKDTFESLCAIVLR--------------PEMSGLVDPDHGISLAAGKEEIR 137
Query: 171 TMCRTYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFL-TERNANRFWIMTS 228
+ R ++ DEA D +L N ++ T
Sbjct: 138 FRNGSRIFFRARERGALRGVKKIALLVIDEAQHLSDSAMASMLPTQNRAYNPQTIYMGTP 197
Query: 229 NPRRLSGKFY---EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS-------- 277
R +G+ + + ++ DP E
Sbjct: 198 PGPRDNGEAFTRLRDKTRAGRTHSTLYVEFAADRDADPLDREQWRKANPSYPAHTSDESI 257
Query: 278 ---------DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEG 328
D R E G + + + I EEA P + +
Sbjct: 258 ANLWENLTGDDFRREALGIWDEHALSRAIDRRQWEEATIDARRPGGVMSFGIDMNPTRTR 317
Query: 329 GDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP--DAIIIDANNTGARTCDY 386
+ + L++K A++ID +
Sbjct: 318 LTIGACMRYDDGTAHIELAEYRDTNHDGTMWAVNLIDKVWEQTAALVIDGQSPATALLPD 377
Query: 387 LEMLGYHVY 395
L G V
Sbjct: 378 LAEAGVTVT 386
>gi|324118085|gb|EGC11984.1| phage large terminase subunit GpP [Escherichia coli E1167]
Length = 100
Score = 61.5 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIES 457
A D+ + +T + +K D + L + + + +++ + + E+
Sbjct: 1 PAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSATYEA 60
Query: 458 KRVKGAKSTDYSDGLMYTFAENPPRSDMDF 487
R + A D + M+ P + +
Sbjct: 61 SRSEEASHADLAWATMHALLNEPLTAGIST 90
>gi|257455568|ref|ZP_05620798.1| phage terminase, large subunit, pbsx family [Enhydrobacter
aerosaccus SK60]
gi|257447034|gb|EEV22047.1| phage terminase, large subunit, pbsx family [Enhydrobacter
aerosaccus SK60]
Length = 428
Score = 61.5 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 37/273 (13%), Positives = 79/273 (28%), Gaps = 23/273 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A +L ++ T ++C + +K ++ +S ++ + ++E+
Sbjct: 28 GGRGGGKSWEIADFLL-IIGTTAKHRILCCREVQKSIKQSVHKLLSDRIAAMGLGGFYEI 86
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ ++ ++ + +F G +EA
Sbjct: 87 LETEIR------------GRNGTEFSFAGLLGHTVDSIKSFEGA-----TITWIEEAQTV 129
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTRTVEGID 262
++ + R N IM+ NPR Y + DD Q++
Sbjct: 130 SAFSLGILIPTVI-RTPNPMVIMSLNPRLPQDAVYAQYIAVERDDTAVVQVNYTDNPHCP 188
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN---IIEEALNREPCPDPYAPLI 319
P D D G+ + + I + DP P+
Sbjct: 189 PELIRLAEQMRDEDFDNYEHIYLGRPKEIADGAIYKAEFEAIRKSNRICNVPHDPNLPVY 248
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD 352
D+ G + + + +
Sbjct: 249 TSWDLGILDPTAIWFFQIYGKEVRVIDYYEANN 281
>gi|148998991|ref|ZP_01826425.1| hypothetical protein CGSSp11BS70_06735 [Streptococcus pneumoniae
SP11-BS70]
gi|147755199|gb|EDK62252.1| hypothetical protein CGSSp11BS70_06735 [Streptococcus pneumoniae
SP11-BS70]
Length = 470
Score = 61.5 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 46/347 (13%), Positives = 96/347 (27%), Gaps = 49/347 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ+ + + A N + + R GK+ L LW + G++++
Sbjct: 43 WQVNLLTSIMAVDKNGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A+ + ++ + +V ++L + + L
Sbjct: 97 AHRISTSHSS-FEKVKRYLEKM------GYVDGEDFSSIRAKGQERIELFDGGGIVQFRT 149
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE-RNANRFWIMTSNPRR 232
RT + + F ++ DEA + +T+ N T
Sbjct: 150 RTSNGGLGEGFD--------LLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPV 201
Query: 233 LSGKFYEIFNKP-------LDDWKRFQID----------TRTVEGIDPSFHEG--IIARY 273
+G + + K W + + I A
Sbjct: 202 SNGTVFTNYRKNCLFGKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAEL 261
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D V+ G +P+ + S I E ++ P + +
Sbjct: 262 GDDKLDHNVQRLGYWPEYNQKSAISETEWNELCVDSIPDLSGK----LFVGVKYGQDGAN 317
Query: 333 V---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + +R + +R N+ I V++ I++D
Sbjct: 318 VALSIAVRTVDERIFVETIDCQSVRNGNDWILDFVKRADVATIVVDG 364
>gi|134288591|ref|YP_001110830.1| hypothetical protein SPSV3_gp30 [Salmonella phage SETP3]
gi|125631956|gb|ABN47359.1| hypothetical protein [Salmonella phage SETP3]
gi|126015316|gb|ABN70689.1| terminase [Salmonella phage SETP5]
gi|126015318|gb|ABN70690.1| terminase [Salmonella phage SETP12]
Length = 423
Score = 61.5 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/359 (13%), Positives = 99/359 (27%), Gaps = 29/359 (8%)
Query: 81 AISAGRGIGKTTLNAW-LVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
A AG G GK+ + +L M + + ++ L + + LS ++
Sbjct: 23 AFVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGIRY 82
Query: 140 WFEMQSLSLH-PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ ++ + + D + +L ++ + DT H + +
Sbjct: 83 KYNKSDNIIYTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAWNKVIA 142
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
P + + P K ++ Q T +
Sbjct: 143 RNRQLPRTYRPI------TPKPANTVSVFTTPEGFRFVHDRWVVKKNPGYEMIQAPTTSN 196
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ + + + Y + + G+F DS + +RE P L
Sbjct: 197 PFLPEDYVQSLRDTY--PGRLIDAYIDGEFVNLTSDSVYYAYDQRKNSSRET-IQPGETL 253
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII-DAN 377
+G D +TV V R D +I+ +++ ++ DA
Sbjct: 254 YIGQDFNVGHMASTVYVQRGYVWHAVAELVDMLDTPEVVREITERWKRHGHHIVMYPDAT 313
Query: 378 NTGARTCD-------YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
++ D L G+ + D N+ LE L
Sbjct: 314 GKNRKSTDASTSDIAQLHNAGFEIRAKSVNPAVKDRVASVNK----------ALESGRL 362
>gi|163842863|ref|YP_001627267.1| hypothetical protein BSUIS_A0614 [Brucella suis ATCC 23445]
gi|163673586|gb|ABY37697.1| protein of unknown function DUF264 [Brucella suis ATCC 23445]
Length = 411
Score = 61.1 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 53/416 (12%), Positives = 106/416 (25%), Gaps = 65/416 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + P + + + + + S LS+
Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
V + + + A
Sbjct: 87 RL-------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAA 127
Query: 196 INDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + P + L + R + T+ + +
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMR 184
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ F + I RY + + R E+ G+ ++ + + IE+ P
Sbjct: 185 TAENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVLRR-----GPVIEHLFDWSKTDLRTTNNKISGLVE 365
P A +++ D + + D +V+ + + + L
Sbjct: 242 PLARIVVAVDPPASSGKASDACSIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYH 301
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--W 423
+ DAI+ + N G L V + + R E + +
Sbjct: 302 THEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKW-----LRAEPVAALYEQGR 356
Query: 424 LEF-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ +++ G + S +S D D L++ E
Sbjct: 357 VRHAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 396
>gi|333008357|gb|EGK27831.1| phage Terminase family protein [Shigella flexneri K-272]
gi|333019844|gb|EGK39116.1| phage Terminase family protein [Shigella flexneri K-227]
Length = 553
Score = 61.1 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 51/450 (11%), Positives = 92/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + +
Sbjct: 41 DREVVERFIAFSRVCPHVKGPMRGRPIELEP--WQQFAFACILGFKVKATGRRKYTSAFI 98
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
+ R K+T A L W + G I A ++ + +
Sbjct: 99 EVP--RKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRR 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKP 244
+ I S + + I+ S + N+
Sbjct: 217 PEGLLFAITTSGSNV--------VSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEV 268
Query: 245 LDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSD--VTRVEVCGQFPQQDIDSFIPLNI 301
D + + +D I G+ S + + Q
Sbjct: 269 DDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV--------------------------- 334
E A G D++ ++V
Sbjct: 329 AECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPAN 388
Query: 335 ----VLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V R+ + D + I EK+ + D N L+
Sbjct: 389 KNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRVL-----GQKRAVDLEFCRNRR 413
G+ V A E NRR
Sbjct: 448 GAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 477
>gi|281600560|gb|ADA73544.1| putative terminase of prophage CP-933C [Shigella flexneri 2002017]
Length = 553
Score = 61.1 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 51/450 (11%), Positives = 91/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + +
Sbjct: 41 DREVVERFIAFSRVCPHVKGPMRGRPIELEP--WQQFAFACILGFKVKATGRRKYTSAFI 98
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
+ R K+T A L W + G I A ++ +
Sbjct: 99 EVP--RKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDNARQMCLLSRPLRR 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKP 244
+ I S + + I+ S + N+
Sbjct: 217 PEGLLFAITTSGSNV--------VSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEV 268
Query: 245 LDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSD--VTRVEVCGQFPQQDIDSFIPLNI 301
D + + +D I G+ S + + Q
Sbjct: 269 DDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV--------------------------- 334
E A G D++ ++V
Sbjct: 329 AECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPAN 388
Query: 335 ----VLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V R+ + D + I EK+ + D N L+
Sbjct: 389 KNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRVL-----GQKRAVDLEFCRNRR 413
G+ V A E NRR
Sbjct: 448 GAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 477
>gi|167759141|ref|ZP_02431268.1| hypothetical protein CLOSCI_01488 [Clostridium scindens ATCC 35704]
gi|167663259|gb|EDS07389.1| hypothetical protein CLOSCI_01488 [Clostridium scindens ATCC 35704]
Length = 597
Score = 61.1 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 46/383 (12%), Positives = 107/383 (27%), Gaps = 31/383 (8%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+ E NF +G E +A +Q + ++ +
Sbjct: 51 YFDVEKSEEIINFAEELT--IAEGDEQENVTA-YPFQCFILGSLNGWRTKEKG--HRRFR 105
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ GR GK+ +N L + + + C A + Q ++ E+ K+++
Sbjct: 106 TSYVQLGRQNGKSFINGILACYYGNFDGYKYGKIFCTATKQDQA-NIVFDEIVKFINSDE 164
Query: 137 N-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+ WF++ + + +L D+K D + H +
Sbjct: 165 DLSEWFKVHEHNHTIDCLCTHSEIKALSGDTKSL--DGHRAYLGIVDEYHAHKTNQMYKL 222
Query: 196 INDEASGTPDVINLGILGF---LTERNAN----RFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ + I L ++ S Y DD
Sbjct: 223 LEGGIKKLKSALISVITTAGFDLKSPCYKLYEYCCNLLKGVFENDSQFVYIAQLDTADDL 282
Query: 249 KRFQIDTRTVEGI--DPSFHEGI-------IARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+ + + + D E + G D V+ + Q +I
Sbjct: 283 YKKENWIKANPILEYDEDALENLVPIANTARDMGGEDLRDFLVKQLNMWMQWSNALYIKD 342
Query: 300 --NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT- 356
A R + +G D++ GGD T + + +++ + +
Sbjct: 343 IKEWKRCAALRTLKDFRGSKCYVGVDLS-SGGDLTSIAIVIPYMVDGVKKYFVHTHSFIP 401
Query: 357 NNKISGLVEKYRPDAIIIDANNT 379
+++ ++ + + +
Sbjct: 402 ASRVDEHIKTDKVPYDVWISKGL 424
>gi|323691285|ref|ZP_08105560.1| phage terminase [Clostridium symbiosum WAL-14673]
gi|323504625|gb|EGB20412.1| phage terminase [Clostridium symbiosum WAL-14673]
Length = 591
Score = 61.1 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 46/383 (12%), Positives = 108/383 (28%), Gaps = 31/383 (8%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+ E NF +G E +A +Q + ++ +
Sbjct: 45 YFDVEKSEEIINFAEELT--IAEGDEQENVTA-YPFQCFILGSLNGWRTKEKG--HRRFR 99
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ GR GK+ +N L + + + C A + Q ++ E+ K+++
Sbjct: 100 TSYVQLGRQNGKSFINGILACYYGNFDGYKYGKIFCTATKQDQA-NIVFDEIVKFINSDE 158
Query: 137 N-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
+ WF++ + + +L D+K D + H +
Sbjct: 159 DLSEWFKVHEHNHTIDCLCTHSEIKALSGDTKSL--DGHRAYLGIVDEYHAHKTNQMYKL 216
Query: 196 INDEASGTPDVINLGILGF---LTERNAN----RFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ + I L ++ S Y DD
Sbjct: 217 LEGGIKKLKSALISVITTAGFDLKSPCYKLYEYCCNLLKGVFENDSQFVYIAQLDTADDL 276
Query: 249 KRFQIDTRTVEGI--DPSFHEGI-------IARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+ + + + D E + G D V+ + Q +I
Sbjct: 277 YKKENWIKANPILEYDEDALENLVPVANTARDMGGEDLRDFLVKQLNMWMQWSNALYIKD 336
Query: 300 --NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT- 356
+ A R + +G D++ GGD T + + +++ + +
Sbjct: 337 IKDWKRCAALRTLKDFRGSKCYVGVDLS-SGGDLTSIAIVIPYMVDGVKKYFVHTHSFIP 395
Query: 357 NNKISGLVEKYRPDAIIIDANNT 379
+++ ++ + + +
Sbjct: 396 ASRVDEHIKTDKVPYDVWISKGL 418
>gi|110805154|ref|YP_688674.1| putative terminase of prophage CP-933C [Shigella flexneri 5 str.
8401]
gi|110614702|gb|ABF03369.1| putative terminase of prophage [Shigella flexneri 5 str. 8401]
Length = 553
Score = 61.1 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 51/450 (11%), Positives = 92/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + +
Sbjct: 41 DREVVERFIAFSRVCPHVKGPMRGRPIELEP--WQQFAFACILGFKVKATGRRKYTSAFI 98
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
+ R K+T A L W + G I A ++ + +
Sbjct: 99 EVP--RKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRR 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKP 244
+ I S + + I+ S + N+
Sbjct: 217 PEGLLFAITTSGSNV--------VSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEV 268
Query: 245 LDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSD--VTRVEVCGQFPQQDIDSFIPLNI 301
D + + +D I G+ S + + Q
Sbjct: 269 DDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV--------------------------- 334
E A G D++ ++V
Sbjct: 329 AECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPAN 388
Query: 335 ----VLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V R+ + D + I EK+ + D N L+
Sbjct: 389 KNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRVL-----GQKRAVDLEFCRNRR 413
G+ V A E NRR
Sbjct: 448 GAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 477
>gi|254362872|ref|ZP_04978947.1| bacteriophage terminase large subunit [Mannheimia haemolytica
PHL213]
gi|153094509|gb|EDN75343.1| bacteriophage terminase large subunit [Mannheimia haemolytica
PHL213]
Length = 410
Score = 61.1 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/301 (13%), Positives = 79/301 (26%), Gaps = 28/301 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT A + R ++C L+ + EV + + P
Sbjct: 26 GGRGSGKTRAFAKMSAVSAYKRAMRGESGVILCGREFMNSLEESSLEEVKQAIKSEPFLA 85
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
F + + Y ++ + + + DE
Sbjct: 86 NF-----------FDVGEKYVRTKDGRISYVFSGLRHNLDSIKSKARI-----LIAWIDE 129
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A + ++ + E N+ W+ + R S P ++ ++ +
Sbjct: 130 AETVSETAWRKLIPTVRENNSE-IWVTWNPENRGSATDTRFRQNPPENSCIIEMSYQDNP 188
Query: 260 GIDPSFHEGIIARYGL-DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ + D R G + + E +P PD P
Sbjct: 189 WFPDVLEQERLNDKQRLDDATYRWIWEGDYLESSDAQIFRDKYQEL--EFKPNPDFNGPY 246
Query: 319 IMGCDIAEEGGDNTVV---VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
G D V V IE + +L T ++ + + D
Sbjct: 247 Y-GLDFGFANDPTACVKCWVFDDDLYIEREAGKVRLELDETAAYLANALPDLSNYTVRAD 305
Query: 376 A 376
+
Sbjct: 306 S 306
>gi|323439023|gb|EGA96756.1| phiSLT ORF 563-like protein, terminase, large subunit
[Staphylococcus aureus O11]
Length = 406
Score = 61.1 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 81/338 (23%), Gaps = 34/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELVHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 337
Query: 299 LNIIEEALNREP-CPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 338 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 375
>gi|194431875|ref|ZP_03064165.1| putative phage terminase, large subunit [Shigella dysenteriae 1012]
gi|194419783|gb|EDX35862.1| putative phage terminase, large subunit [Shigella dysenteriae 1012]
Length = 553
Score = 61.1 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 50/450 (11%), Positives = 91/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + +
Sbjct: 41 DREVVERFIAFSRVCPHVKGAMRGSPIELEP--WQQFAFACILGFKVKATGRRKYTSAFI 98
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
+ R K+T A L W + G I A ++ + +
Sbjct: 99 EVP--RKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRR 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVMHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKP 244
+ I S + + I+ S + N+
Sbjct: 217 PEGLLFAITTSGSNV--------VSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEV 268
Query: 245 LDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSD--VTRVEVCGQFPQQDIDSFIPLNI 301
D + + +D I G+ S + + Q
Sbjct: 269 DDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGATPWMGNGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV-------------------------- 335
E A G D++ ++V
Sbjct: 329 AECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLVSRHYLPEFQLQNPAN 388
Query: 336 -----LRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
R+ + D + I EK+ + D N L+
Sbjct: 389 KNRAIYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRVL-----GQKRAVDLEFCRNRR 413
G+ V A E NRR
Sbjct: 448 GAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 477
>gi|323940932|gb|EGB37119.1| hypothetical protein ERDG_02336 [Escherichia coli E482]
Length = 443
Score = 61.1 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 48/325 (14%), Positives = 85/325 (26%), Gaps = 40/325 (12%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMST---RPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
A+ GR GKT + + + ++ RPG+ + E + ++ + + +
Sbjct: 27 AVRCGRRWGKTFMLSSAAVTYATSQFRRPGMDI------ELGGRVGIFTAEYRQYQEIYD 80
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
K + L + L K + D + I+
Sbjct: 81 KLEEILLPLKKS---FSRQEKRLLLKNGGKIDFWVTN-------DNKLAGRGREYEIILI 130
Query: 198 DEASG------TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
DEA+ ++ I L + T + FY I + +
Sbjct: 131 DEAAFTKSPEMLKEIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAICHNKDLGFHEH 190
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREP 310
T + + P E D V R E +F S E +P
Sbjct: 191 HAPTSSNPFVPPEELEKERQNN--DPRVFRQEFLAEFVDWSAASLFDVRKWFEGENQDQP 248
Query: 311 CPDPY------APLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWS--KTDLRTTNN 358
P A + + VV R G + DW + D
Sbjct: 249 VDYPEMCQAVFAVMDTAVKGGTDHDGTAVVYYAVDTRPGIQRLTILDWDVVQIDGALLEE 308
Query: 359 KISGLVEKYRPDAIIIDANNTGART 383
I + + + A N
Sbjct: 309 WIPSVFTRLNELSGQCVAVNGSLGV 333
>gi|22536761|ref|NP_687612.1| hypothetical protein SAG0585 [Streptococcus agalactiae 2603V/R]
gi|22533605|gb|AAM99484.1|AE014218_1 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
Length = 471
Score = 61.1 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 49/366 (13%), Positives = 100/366 (27%), Gaps = 53/366 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ + + A +++ + R GKT + L LW + G+ ++
Sbjct: 44 WQENMLIPMMAINEDNLWVHQKYGYAI----PRRNGKTEVVYILELWAL--HKGLKILHT 97
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A + + FE L + + S +
Sbjct: 98 A-----------------HRISTSHSSFEKVKKYLEMSGYVDGEDFISNKAKGQERIEFK 140
Query: 174 RTYS--EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ S + R T G +I DEA + +T+ + + + P
Sbjct: 141 SSGSVIQFRTRTSNGGLGEGFDLLIIDEAQEYTAEQESALKYTVTDSDNPMTIMCGTPPT 200
Query: 232 RL-SGKFYEIFNKP-------LDDWKRFQIDTRTVEGIDPSFH------------EGIIA 271
+ +G +E + K W + +D S++ I A
Sbjct: 201 MVSTGTVFESYRKECLKGDRRYSGWAEWSVDEMQPIHDVKSWYVANPSMGYHLNERKIEA 260
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D ++ G +P + S I + + + P + I
Sbjct: 261 ELGEDEIDHNIQRLGYWPSFNQKSVISEKEWAKLKVEQVPELKSK----LFVGIKFGQDG 316
Query: 331 NTV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
N V + R + +R I ++ +++D + +
Sbjct: 317 NNVSLSIAARASENKVFVEAIDCLSVRNGTQWIINFLKSADIAKVVVDGASGQELLAQEM 376
Query: 388 EMLGYH 393
G
Sbjct: 377 REHGLK 382
>gi|294848480|ref|ZP_06789226.1| phage terminase [Staphylococcus aureus A9754]
gi|294824506|gb|EFG40929.1| phage terminase [Staphylococcus aureus A9754]
Length = 566
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 81/338 (23%), Gaps = 34/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 54 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 107
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 108 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 166
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 167 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 226
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 227 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 280
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 281 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 340
Query: 299 LNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 341 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 378
>gi|262049872|ref|ZP_06022734.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
aureus D30]
gi|259162021|gb|EEW46601.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
aureus D30]
gi|315128432|gb|EFT84440.1| phage Terminase [Staphylococcus aureus subsp. aureus CGS03]
Length = 563
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 81/338 (23%), Gaps = 34/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 337
Query: 299 LNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 338 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 375
>gi|215401146|ref|YP_002332401.1| putative terminase large subunit [Staphylococcus phage
phiSauS-IPLA35]
gi|215260497|gb|ACJ64627.1| gp38 [Staphylococcus phage phiSauS-IPLA35]
Length = 566
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 81/338 (23%), Gaps = 34/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 54 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 107
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 108 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 166
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 167 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 226
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 227 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 280
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 281 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 340
Query: 299 LNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 341 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 378
>gi|66395661|ref|YP_240002.1| ORF005 [Staphylococcus phage 47]
gi|87162180|ref|YP_494101.1| phiSLT ORF 563-like protein, terminase, large subunit
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|156603994|ref|YP_001429940.1| putative terminase large subunit [Staphylococcus phage tp310-2]
gi|161509682|ref|YP_001575341.1| terminase large subunit [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|62636085|gb|AAX91196.1| ORF005 [Staphylococcus phage 47]
gi|87128154|gb|ABD22668.1| phiSLT ORF 563-like protein, terminase, large subunit
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|154818080|gb|ABS87507.1| putative terminase large subunit [Staphylococcus phage tp310-2]
gi|160368491|gb|ABX29462.1| terminase large subunit [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|302333121|gb|ADL23314.1| phage terminase large subunit [Staphylococcus aureus subsp. aureus
JKD6159]
gi|315197734|gb|EFU28068.1| terminase large subunit [Staphylococcus aureus subsp. aureus CGS01]
gi|320140397|gb|EFW32252.1| hypothetical protein HMPREF9528_01293 [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320142759|gb|EFW34562.1| hypothetical protein HMPREF9529_01859 [Staphylococcus aureus subsp.
aureus MRSA177]
Length = 563
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 81/338 (23%), Gaps = 34/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 337
Query: 299 LNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 338 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 375
>gi|257428234|ref|ZP_05604632.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
65-1322]
gi|257275075|gb|EEV06562.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
65-1322]
Length = 566
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 81/338 (23%), Gaps = 34/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 54 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 107
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 108 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 166
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 167 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 226
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 227 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 280
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 281 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 340
Query: 299 LNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 341 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 378
>gi|229104554|ref|ZP_04235220.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
Rock3-28]
gi|228678890|gb|EEL33101.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
Rock3-28]
Length = 562
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/354 (11%), Positives = 82/354 (23%), Gaps = 39/354 (11%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
+L E ++ +E ++ P + + WQ +
Sbjct: 37 NDLKRQGTEEFPW---VFEEEKAHRPIRYIEKFCRP---SKGDYKRLVL-QPWQHFVIGS 89
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQ 119
+ +G I GR GKTT+ + L + + PG V LAN++ Q
Sbjct: 90 LYGWVHKDTG--YRRFREGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQ 147
Query: 120 LKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
L+ E + P N+ P SD
Sbjct: 148 AGE-LFDESRAMVQKSPLLRKHLRENQKGIFHDKTHSKIEPRASDSKKLDGLNTHLGIFD 206
Query: 172 MCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFW 224
+ + G + I L
Sbjct: 207 EIHEFKNFKLINVIKKSRGARKQPMIVYITTAGYQLEGPLVQYYEIATDVLEGVIDQDRK 266
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQID---TRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ + W + + + + + + +
Sbjct: 267 FYFMAEMDSVDEIE-----NPELWIKANPNMGVSLDLPSLIDDW--NTDKHTDAEKYDWI 319
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVV 334
+ F D SF+ + I++ + + G D++ +
Sbjct: 320 TKQFNIFVDNDEMSFVGIEILKRNEEVIDIKGLAGKECVAGYDLSATEDFTSAC 373
>gi|301382086|ref|ZP_07230504.1| hypothetical protein PsyrptM_05618 [Pseudomonas syringae pv. tomato
Max13]
gi|302061639|ref|ZP_07253180.1| hypothetical protein PsyrptK_16760 [Pseudomonas syringae pv. tomato
K40]
gi|302131811|ref|ZP_07257801.1| hypothetical protein PsyrptN_10492 [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 433
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 56/364 (15%), Positives = 98/364 (26%), Gaps = 43/364 (11%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P F+ + AG G GKT + + PG++ A + Q++ + +
Sbjct: 14 LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTM----- 67
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
E + + H + Y S E+P T VG + +
Sbjct: 68 --------EEVAYEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVGHAL 119
Query: 194 AIINDEASGTP-DVINLGILGFLT--ERNANRFWIMTSNPRRLSGKFYEIFNKPLDD--- 247
D + I+ + +T+ P F + + D
Sbjct: 120 VDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQLRDKPAL 179
Query: 248 ---WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
+ Q T E + + ++ Y + R + GQF S I
Sbjct: 180 KEMYGLIQASTFDNELNLPDDYIPSLMESYPE--QLIRAYLNGQFVNLTSGS-IYHAYDR 236
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD-WSKTDLRTTNNKISG 362
+ PL +G D V R + + + D +I
Sbjct: 237 KLNQCFDTVQAGEPLFIGMDFNVGKMAAITHVKRDKGLPRAVDEFMDGYDTPDMIRRIKE 296
Query: 363 LVEKYRPDAIII--------DANNTG-----ARTCD--YLEMLGYHVYRVLGQKRAVDLE 407
++ D I DA+ A D L+ G+ V D
Sbjct: 297 RYWRHDGDKYIKSCEIRIYPDASGDSRKSVNASVTDIAMLKQAGFTVIAPAANPPVKDRI 356
Query: 408 FCRN 411
N
Sbjct: 357 NAMN 360
>gi|218689523|ref|YP_002397735.1| putative phage terminase large subunit [Escherichia coli ED1a]
gi|218427087|emb|CAR07966.2| putative phage terminase large subunit [Escherichia coli ED1a]
Length = 553
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/450 (11%), Positives = 91/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + +
Sbjct: 41 DREVVERFIAFSRVCPHVKGPMRGRPIELEP--WQQFAFACILGFKVKATGRRKYTSAFI 98
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
+ R K+T A L W + G I A ++ + +
Sbjct: 99 EVP--RKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRR 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKP 244
+ I S + + I+ S + N+
Sbjct: 217 PEGLLFAITTSGSNV--------VSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEV 268
Query: 245 LDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSD--VTRVEVCGQFPQQDIDSFIPLNI 301
D + + +D I G+ S + + Q
Sbjct: 269 DDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGATPWMGNGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV-------------------------- 335
E A G D++ ++V
Sbjct: 329 AECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLVSRHYLPEFQLQNPAN 388
Query: 336 -----LRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
R+ + D + I EK+ + D N L+
Sbjct: 389 KNRAIYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRVL-----GQKRAVDLEFCRNRR 413
G+ V A E NRR
Sbjct: 448 GAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 477
>gi|66396048|ref|YP_240381.1| ORF008 [Staphylococcus phage 71]
gi|62636467|gb|AAX91578.1| ORF008 [Staphylococcus phage 71]
Length = 421
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/269 (11%), Positives = 78/269 (28%), Gaps = 23/269 (8%)
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ GRG GK++ + ++ + R ++ + + ++ L T+++ ++ +
Sbjct: 27 ILNIIAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQK 85
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
H F+++ + + + ER + + +A I
Sbjct: 86 VSHLFKVKVSPMEITYIP-----------RGNRIIFRGAQNPERLKSLKDSRFPFSVAWI 134
Query: 197 NDEASGTPDVINLGILGFLTERN-----ANRFWIMTSNPRRLSGKFYEIFNK--PLDDWK 249
+ A + I L +F+ + P+R + + D+
Sbjct: 135 EELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNTF 194
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
I F + + + R E G+ +P N + +
Sbjct: 195 VHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNNLRIEEIPQ 251
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
D + + D D V
Sbjct: 252 GQYDTFDNIRNAVDFG-YATDPLAFVRWH 279
>gi|66046030|ref|YP_235871.1| hypothetical protein Psyr_2794 [Pseudomonas syringae pv. syringae
B728a]
gi|63256737|gb|AAY37833.1| Protein of unknown function DUF264 [Pseudomonas syringae pv.
syringae B728a]
Length = 433
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 56/364 (15%), Positives = 98/364 (26%), Gaps = 43/364 (11%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P F+ + AG G GKT + + PG++ A + Q++ + +
Sbjct: 14 LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTM----- 67
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
E + + H + Y S E+P T VG + +
Sbjct: 68 --------EEVAYEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVGHAL 119
Query: 194 AIINDEASGTP-DVINLGILGFLT--ERNANRFWIMTSNPRRLSGKFYEIFNKPLDD--- 247
D + I+ + +T+ P F + + D
Sbjct: 120 VDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQLRDKPAL 179
Query: 248 ---WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
+ Q T E + + ++ Y + R + GQF S I
Sbjct: 180 KEMYGLIQASTFDNELNLPDDYIPSLMESYPE--QLIRAYLNGQFVNLTSGS-IYHAYDR 236
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD-WSKTDLRTTNNKISG 362
+ PL +G D V R + + + D +I
Sbjct: 237 KLNQCFDTVQAGEPLFIGMDFNVGKMAAITHVKRDKGLPRAVDEFMDGYDTPDMIRRIKE 296
Query: 363 LVEKYRPDAIII--------DANNTG-----ARTCD--YLEMLGYHVYRVLGQKRAVDLE 407
++ D I DA+ A D L+ G+ V D
Sbjct: 297 RYWRHDGDKYIKSCEIRVYPDASGDSRKSVNASVTDIAMLKQAGFTVIAPAANPPVKDRI 356
Query: 408 FCRN 411
N
Sbjct: 357 NAMN 360
>gi|57651294|ref|YP_185259.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
aureus subsp. aureus COL]
gi|66395593|ref|YP_239935.1| ORF005 [Staphylococcus phage 3A]
gi|148267493|ref|YP_001246436.1| phage terminase [Staphylococcus aureus subsp. aureus JH9]
gi|150393547|ref|YP_001316222.1| phage terminase [Staphylococcus aureus subsp. aureus JH1]
gi|262052891|ref|ZP_06025074.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
aureus 930918-3]
gi|57285480|gb|AAW37574.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
aureus subsp. aureus COL]
gi|62635939|gb|AAX91050.1| ORF005 [Staphylococcus phage 3A]
gi|147740562|gb|ABQ48860.1| phage Terminase [Staphylococcus aureus subsp. aureus JH9]
gi|149945999|gb|ABR51935.1| phage Terminase [Staphylococcus aureus subsp. aureus JH1]
gi|259159198|gb|EEW44259.1| prophage L54a, terminase, large subunit, putative [Staphylococcus
aureus 930918-3]
gi|329730589|gb|EGG66974.1| putative phage terminase, large subunit [Staphylococcus aureus
subsp. aureus 21193]
Length = 563
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 81/338 (23%), Gaps = 34/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 337
Query: 299 LNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 338 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 375
>gi|301328262|ref|ZP_07221382.1| conserved domain protein [Escherichia coli MS 78-1]
gi|300845291|gb|EFK73051.1| conserved domain protein [Escherichia coli MS 78-1]
Length = 89
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 412 RRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
+T + +K D + L + + + +++ + + E+ R + A D
Sbjct: 1 MKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHADL 60
Query: 469 SDGLMYTFAENPPRSDMDF 487
+ M+ P + +
Sbjct: 61 AWATMHALLNEPLTAGIST 79
>gi|282905860|ref|ZP_06313715.1| gp38 [Staphylococcus aureus subsp. aureus Btn1260]
gi|282921761|ref|ZP_06329478.1| phage terminase, large subunit [Staphylococcus aureus A9765]
gi|282927347|ref|ZP_06334965.1| phage terminase, large subunit [Staphylococcus aureus A10102]
gi|282331152|gb|EFB60666.1| gp38 [Staphylococcus aureus subsp. aureus Btn1260]
gi|282590671|gb|EFB95747.1| phage terminase, large subunit [Staphylococcus aureus A10102]
gi|282594023|gb|EFB99012.1| phage terminase, large subunit [Staphylococcus aureus A9765]
Length = 566
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 81/338 (23%), Gaps = 34/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 54 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 107
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 108 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 166
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 167 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 226
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 227 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 280
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 281 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 340
Query: 299 LNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 341 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 378
>gi|49485838|ref|YP_043059.1| terminase large subunit [Staphylococcus aureus subsp. aureus
MSSA476]
gi|49244281|emb|CAG42708.1| terminase large subunit [Staphylococcus aureus subsp. aureus
MSSA476]
Length = 566
Score = 60.7 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 81/338 (23%), Gaps = 34/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 54 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 107
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 108 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 166
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 167 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 226
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 227 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 280
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 281 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 340
Query: 299 LNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 341 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 378
>gi|284024511|ref|ZP_06378909.1| phiSLT ORF 563-like protein, terminase, large subunit
[Staphylococcus aureus subsp. aureus 132]
Length = 563
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 81/338 (23%), Gaps = 34/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 337
Query: 299 LNIIEEALNREP-CPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 338 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 375
>gi|258420300|ref|ZP_05683247.1| gp38 [Staphylococcus aureus A9719]
gi|258448839|ref|ZP_05696949.1| phage terminase large subunit [Staphylococcus aureus A6224]
gi|282919225|ref|ZP_06326960.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
C427]
gi|295407561|ref|ZP_06817354.1| phage terminase [Staphylococcus aureus A8819]
gi|297246591|ref|ZP_06930424.1| phage terminase [Staphylococcus aureus A8796]
gi|257843725|gb|EEV68127.1| gp38 [Staphylococcus aureus A9719]
gi|257857876|gb|EEV80767.1| phage terminase large subunit [Staphylococcus aureus A6224]
gi|282317035|gb|EFB47409.1| phage terminase, large subunit [Staphylococcus aureus subsp. aureus
C427]
gi|294967580|gb|EFG43616.1| phage terminase [Staphylococcus aureus A8819]
gi|297176549|gb|EFH35814.1| phage terminase [Staphylococcus aureus A8796]
Length = 566
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 81/338 (23%), Gaps = 34/338 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 54 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 107
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 108 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 166
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 167 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 226
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 227 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 280
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 281 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 340
Query: 299 LNIIEEALNREP-CPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 341 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACA 378
>gi|332983328|ref|YP_004464769.1| Terminase [Mahella australiensis 50-1 BON]
gi|332701006|gb|AEE97947.1| Terminase [Mahella australiensis 50-1 BON]
Length = 550
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 60/530 (11%), Positives = 132/530 (24%), Gaps = 104/530 (19%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLNSVNNPNP 75
M + F K T E + P WQ + + + +
Sbjct: 29 MAEGSRYDKEAADAAVTFINCLKHTKGEWYGMPFELIDWQEQIVRDIFGILKPNGYR--- 85
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ I + GK+ L A + L+L G V A+ Q + ++ +
Sbjct: 86 QFNTAYIEIPKKQGKSELAAAIALYLTCGDFEHGGEVYGCASDRQQA-SIVFDVAVDMVE 144
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
P LS + + Y + + H
Sbjct: 145 QCPALKSRIKPMLSQKRLVYKP----------------LGSFYQVLSAEAYT-KHGLNVH 187
Query: 194 AIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL------ 245
++ DE P D+ ++ + G R F+++T+ + +E+ K
Sbjct: 188 GVVFDELHAQPNRDLYDVMLHGSGDARKQPLFFLITTAGTDRNSICWEVHQKAEDILQGR 247
Query: 246 ----------------DDWKRFQIDTRTVEGID-PSFHEGII------ARYGLDSDVTRV 282
DDW ++ + + E + + + ++ R
Sbjct: 248 KIDPTFYPVIYSAADTDDWTSEKVWRKVNPSLGITVDIEKLRVACENAKQNPAEENLFRQ 307
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG------------- 329
Q+ +Q + + A + G D++
Sbjct: 308 LRLNQWVKQSVRWMPMDKWDKCAFPVDAEKLRGRTCYGGLDLSSTTDITAFVLVFPPLDE 367
Query: 330 -----------------------DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
D+ + + + I L K
Sbjct: 368 SDKYQILPFFWIPEENIDQRVRRDHVPYDVWERQGFLFTTEGNVVHYGFIETFIEELGMK 427
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEF 426
Y I D + LE LG+ V + + + + + + + +
Sbjct: 428 YNIKEIAFDRWGA-IQMTQNLEALGFTVVPFGQGFKDMSPPT----KELMKLTLEERIAH 482
Query: 427 ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
+++ + G + + K + D + L+
Sbjct: 483 GGNP----VLRWMMDNIYVKTDPAGNIK--PDKEKSTERIDGAVALIMAL 526
>gi|297247965|ref|ZP_06931683.1| phage DNA packaging protein [Brucella abortus bv. 5 str. B3196]
gi|297175134|gb|EFH34481.1| phage DNA packaging protein [Brucella abortus bv. 5 str. B3196]
Length = 415
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 56/445 (12%), Positives = 112/445 (25%), Gaps = 72/445 (16%)
Query: 56 LEFMEVVDAHCLNSVNNPNPE---VFKGAISAGRGIGKTTLNAWLVLWLMSTRPG----- 107
+ + D + + + P I GRG GKT A V + P
Sbjct: 6 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 65
Query: 108 -ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ + + + + S LS+ V
Sbjct: 66 SGHIALVGETFNDAREVMVDGPSGILSVSRL-------------------VRPRYEASRR 106
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFW 224
+ + + A DE + P + L + R
Sbjct: 107 RLIWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 166
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ T+ + + + F + I RY + + R E+
Sbjct: 167 VTTTP---RAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYA-GTRLGRQEL 222
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLR---- 337
G+ ++ + + IE+ P P A +++ D + + D +V+
Sbjct: 223 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVVAGIDA 280
Query: 338 -RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ + + L + DAI+ + N G
Sbjct: 281 EGVGHVLADESMTMAKPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAED-------PS 333
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMAD--WLEF-ASLINHSGLIQNLKSLKSFIVPNTGEL 453
V KR R E + + + +++ G
Sbjct: 334 VPVLKRRASRGKW--LRAEPVAALYEQGRVRHAGRFPA----LEDEMC----DFAPEG-- 381
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAE 478
+ S +S D D L++ E
Sbjct: 382 -LSS-----GRSPDRLDALVWALGE 400
>gi|160897385|ref|YP_001562967.1| PBSX family phage terminase large subunit [Delftia acidovorans
SPH-1]
gi|160362969|gb|ABX34582.1| phage terminase, large subunit, PBSX family [Delftia acidovorans
SPH-1]
Length = 433
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/348 (12%), Positives = 80/348 (22%), Gaps = 36/348 (10%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISV----ICLANSETQLKTTLWAEVSKWLSLLP 136
A GRG GKT A + V +C L+ + E + + P
Sbjct: 24 ACDGGRGSGKTRSFAKMAAVKGYQYGKAGVTGILLCARQFMNSLEDSSLEECKRAIEDEP 83
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
A +Y D + G +
Sbjct: 84 ------------WLAAYYDVGDKYIKSRDGRITFAFAGLDRNIASIKSKG----RLLLCW 127
Query: 197 NDEASGTPDVINLGILGFLTERNANR---FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DEA D ++ L E + W+ + R+ + K +
Sbjct: 128 VDEAEPVTDEAWTTLIPTLREEGTDWNAELWVTWNPKRKSAPVEKRFKGSSDPRMKYVRC 187
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ + + + G + ++ +I++ +
Sbjct: 188 NWKDNPKFPALLERVRLRDLAERPEQYAHIWEGDYATVIEGAYFASHIVKARQDNRIGRV 247
Query: 314 PYAPLIM---GCDIAEEGGDNTVVVLRRGPVI----------EHLFDWSKTDLRTTNNKI 360
P PL+ DI G + + E + + L K
Sbjct: 248 PADPLMTLRAFVDIGGTGARADAFAMWIAQFVGKEIRVLDYYEQVGQPLSSHLNWMREKG 307
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
+ + P L GY V V Q +
Sbjct: 308 YDKAQIWLPHDGATQDKVHDVSYESALRQAGYTVTVVPNQGKGAAKAR 355
>gi|330977766|gb|EGH77669.1| hypothetical protein PSYAP_13460 [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 384
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 56/364 (15%), Positives = 98/364 (26%), Gaps = 43/364 (11%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P F+ + AG G GKT + + PG++ A + Q++ + +
Sbjct: 14 LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTM----- 67
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
E + + H + Y S E+P T VG + +
Sbjct: 68 --------EEVAYEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVGHAL 119
Query: 194 AIINDEASGTP-DVINLGILGFLT--ERNANRFWIMTSNPRRLSGKFYEIFNKPLDD--- 247
D + I+ + +T+ P F + + D
Sbjct: 120 VDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQLRDKPAL 179
Query: 248 ---WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
+ Q T E + + ++ Y + R + GQF S I
Sbjct: 180 KEMYGLIQASTFDNELNLPDDYIPSLMESYPE--QLIRAYLNGQFVNLTSGS-IYHAYDR 236
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD-WSKTDLRTTNNKISG 362
+ PL +G D V R + + + D +I
Sbjct: 237 KLNQCFDTVQAGEPLFIGMDFNVGKMAAITHVKREKGLPRAVDEFMDGYDTPDMIRRIKE 296
Query: 363 LVEKYRPDAIII--------DANNTG-----ARTCD--YLEMLGYHVYRVLGQKRAVDLE 407
++ D I DA+ A D L+ G+ V D
Sbjct: 297 RYWRHDGDKYIKSCEIRIYPDASGDSRKSVNASVTDIAMLKQAGFTVIAPAANPPVKDRI 356
Query: 408 FCRN 411
N
Sbjct: 357 NAMN 360
>gi|283470731|emb|CAQ49942.1| putative phage terminase, large subunit [Staphylococcus aureus
subsp. aureus ST398]
Length = 563
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 85/354 (24%), Gaps = 37/354 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 337
Query: 299 LNIIEEALNREP-CPDPYAPLIMGCDIAEEGGDNTV---VVLRRGPVIEHLFDW 348
+++ P +G D++E L G V W
Sbjct: 338 YPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSW 391
>gi|283469600|emb|CAQ48811.1| putative phage terminase, large subunit [Staphylococcus aureus
subsp. aureus ST398]
Length = 563
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 85/354 (24%), Gaps = 37/354 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 P--------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 337
Query: 299 LNIIEEALNREP-CPDPYAPLIMGCDIAEEGGDNTV---VVLRRGPVIEHLFDW 348
+++ P +G D++E L G V W
Sbjct: 338 YPTLQKNNEIISLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSW 391
>gi|23335598|ref|ZP_00120832.1| hypothetical protein Blon03000707 [Bifidobacterium longum DJO10A]
gi|189440021|ref|YP_001955102.1| phage terminase large subunit [Bifidobacterium longum DJO10A]
gi|189428456|gb|ACD98604.1| Phage terminase large subunit [Bifidobacterium longum DJO10A]
Length = 477
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 44/369 (11%), Positives = 89/369 (24%), Gaps = 44/369 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMSTRPGISV 110
WQ + ++ A + + + + R GKT W+ + + PG+ +
Sbjct: 37 DVWQRQINRIILA-----KSADGFWSARNTVLSIPRQTGKTYDIGWVAIHRAARTPGMRI 91
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ A + +K T + + L + SL +
Sbjct: 92 VWTAQHFSVIKDTFESLCAIVLR--------------PEMSGLVDPDHGISLAAGKEEIR 137
Query: 171 TMCRTYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTER-NANRFWIMTS 228
+ R ++ DEA D +L N ++ T
Sbjct: 138 FRNGSRIFFRARERGALRGVKKIALLVIDEAQHLSDSAMASMLPTQNRAWNPQTIYMGTP 197
Query: 229 NPRRLSGKFYEIFNKPL---DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS-------- 277
R +G+ + ++ DP +
Sbjct: 198 PGPRDNGEAFTRLRDKARAGRTHSTLYVEFTADRDADPLDRQQWRKANPSYPSHTSDESI 257
Query: 278 ---------DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEG 328
D R E G + + + I EEA P + +
Sbjct: 258 ANLWENLTGDDFRREALGIWDEHALSRAIDRRQWEEATIERRRPGGVMSFGIDMNPQRTR 317
Query: 329 GDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP--DAIIIDANNTGARTCDY 386
+ + + L++K +++ID +
Sbjct: 318 LTIGACMRYDDNTAHIELAEYRDTNQDGTMWAVNLIDKVWEQTASLVIDGQSPATALLPD 377
Query: 387 LEMLGYHVY 395
L G V
Sbjct: 378 LAQAGVTVT 386
>gi|260168345|ref|ZP_05755156.1| Phage DNA packaging protein [Brucella sp. F5/99]
Length = 411
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 52/416 (12%), Positives = 106/416 (25%), Gaps = 65/416 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + P + + + + + S LS+
Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
V + + + A
Sbjct: 87 RL-------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAA 127
Query: 196 INDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + P + L + R + T+ + +
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMR 184
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ F + I RY + + R ++ G+ ++ + + IE+ P
Sbjct: 185 TAENAGNLAEGFMQTIARRYA-GTRLGRQKLDGELVEERPGALWSRDRIEQCFEEN--PP 241
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVLRR-----GPVIEHLFDWSKTDLRTTNNKISGLVE 365
P A +++ D + + D +V+ + + + L
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYH 301
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--W 423
+ DAI+ + N G L V + + R E + +
Sbjct: 302 THEADAIVAEVNQGGEMVAAVLAAEDPSVPVLKRRASRGKW-----LRAEPVAALYEQGR 356
Query: 424 LEF-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ +++ G + S +S D D L++ E
Sbjct: 357 VRHAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 396
>gi|325108051|ref|YP_004269119.1| terminase [Planctomyces brasiliensis DSM 5305]
gi|324968319|gb|ADY59097.1| Terminase [Planctomyces brasiliensis DSM 5305]
Length = 515
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/345 (10%), Positives = 92/345 (26%), Gaps = 36/345 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R WQ + + + +V K + R GKT + A + ++ + ++
Sbjct: 28 RPWQRQIITNLY----------RGDVTKLFLLLSRKNGKTQIAAGICMFHLLCMKNQQIL 77
Query: 112 CLANSETQLKTTLWAE---------VSKWLSLLPNKHWFEMQSLSLH-----PAPWYSDV 157
A S+ Q A +++ ++P+K ++ +
Sbjct: 78 GAAASQEQASRLYDAMEQMVRADPVLNQLCEIIPSKKRIVCEATNSFYCAVTSGGDVQHG 137
Query: 158 LHCSLGIDSKHYSTMCRTYSEERPDTFVGH--HNTYGMAIINDEASGTPDVINLGIL--G 213
+L + + +S + + G I+ + + + +
Sbjct: 138 YSPTLVVMDELHSWTQPKHRKLHAALTTGFGARANPLTICISTQTADRTSLAHEEFEFAR 197
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK----RFQIDTRTVEGIDPSFHEG- 268
L R N + S + DW +++ + ++ F +
Sbjct: 198 KLKGRIENGKVKRSGQNENPSYLAVLYYADEKSDWTDKNLWKRVNPALGDFLNEKFLDEE 257
Query: 269 --IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAE 326
+ + + R + + + ++ G DIA
Sbjct: 258 FKLAQQIPSRQNYFRQYYLNVPIDSLGKW-MDMALWDKCRKPLLEDYTRFKCWGGLDIAP 316
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
+ +L + H+ W + Y A
Sbjct: 317 VNDLSVFTLLFDVDGVYHVRSWFWCPSADILQRSKIEQVPYDQWA 361
>gi|213419366|ref|ZP_03352432.1| Phage protein P [Salmonella enterica subsp. enterica serovar Typhi
str. E01-6750]
Length = 91
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 412 RRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
+T + +K D + L + + + +++ + + E+ R + A D
Sbjct: 3 MKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHADL 62
Query: 469 SDGLMYTFAENPPRSDMDF 487
+ M+ P + +
Sbjct: 63 AWATMHALLNEPLTAGIST 81
>gi|265983712|ref|ZP_06096447.1| terminase large subunit [Brucella sp. 83/13]
gi|264662304|gb|EEZ32565.1| terminase large subunit [Brucella sp. 83/13]
Length = 384
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 52/414 (12%), Positives = 105/414 (25%), Gaps = 65/414 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V + P + + + + + S LS+
Sbjct: 2 GGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSRL 61
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
V + + + A
Sbjct: 62 -------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAAWC 102
Query: 198 DEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + P + L + R + T+ + +
Sbjct: 103 DELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMRTV 159
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ F + I RY + + R E+ G+ ++ + + IE+ P P
Sbjct: 160 ENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPPL 216
Query: 316 APLIMGCDI---AEEGGDNTVVVLRR-----GPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
A +++ D + + D +V+ + + + L +
Sbjct: 217 ARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYHTH 276
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLE 425
DAI+ + N G L V + + R E + + +
Sbjct: 277 EADAIVAEVNKGGEMVAAVLAAEDSSVPVLKRRASRGKW-----LRAEPVAALYEQGRVR 331
Query: 426 F-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ G + S +S D D L++ E
Sbjct: 332 HAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 369
>gi|302186554|ref|ZP_07263227.1| hypothetical protein Psyrps6_09413 [Pseudomonas syringae pv.
syringae 642]
Length = 433
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 56/364 (15%), Positives = 98/364 (26%), Gaps = 43/364 (11%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P F+ + AG G GKT + + PG++ A + Q++ + +
Sbjct: 14 LPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPGVNAGYFAPTYPQIRDIFYPTM----- 67
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
E + + H + Y S E+P T VG + +
Sbjct: 68 --------EEVAYEWGLKTKINQANHEVHIYSGRQYRGTVICRSMEKPQTIVGFKVGHAL 119
Query: 194 AIINDEASGTP-DVINLGILGFLT--ERNANRFWIMTSNPRRLSGKFYEIFNKPLDD--- 247
D + I+ + +T+ P F + + D
Sbjct: 120 VDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFLQFVKQMRDKPAL 179
Query: 248 ---WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
+ Q T E + + ++ Y + R + GQF S I
Sbjct: 180 KEMYGLIQASTFDNELNLPDDYIPSLMESYPE--QLIRAYLNGQFVNLTSGS-IYHAYDR 236
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD-WSKTDLRTTNNKISG 362
+ PL +G D V R + + + D +I
Sbjct: 237 KLNQCFDTVQAGEPLFIGMDFNVGKMAAITHVKREKGLPRAVDEFMDGYDTPDMIRRIKE 296
Query: 363 LVEKYRPDAIII--------DANNTG-----ARTCD--YLEMLGYHVYRVLGQKRAVDLE 407
++ D I DA+ A D L+ G+ V D
Sbjct: 297 RYWRHDGDKYIKTCEVRVYPDASGDSRKSVNASVTDIAMLKQAGFTVIAPAANPPVKDRI 356
Query: 408 FCRN 411
N
Sbjct: 357 NAMN 360
>gi|262380916|ref|ZP_06074065.1| terminase [Acinetobacter radioresistens SH164]
gi|262297448|gb|EEY85368.1| terminase [Acinetobacter radioresistens SH164]
Length = 517
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/347 (12%), Positives = 83/347 (23%), Gaps = 56/347 (16%)
Query: 15 LFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
L + + ++ F + F WQ++++ + +N
Sbjct: 7 LANYYFCEDEADKVIGFFAECLTHSTGQWRGKPFDLLD-WQIKYLRELFGWRRK--DNHK 63
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWL 132
+ A+ R GKT L A + L+ + P +A Q
Sbjct: 64 RRYRQSALFISRKQGKTELAAAIALYCLHCENEPAAQCYNVAADTDQA------------ 111
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ + ++ S + + H
Sbjct: 112 --------ALCFNAAKAMTENEHELDSRSEIYKRSILVPNSGSVYRVLSSSASTKHGLNV 163
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTS----NPRRLSGKFYEIFNKPLD-- 246
DE D + + T N + TS N + + ++ K D
Sbjct: 164 HYCGIDELHCIDDRELVDVFTTGTLARNNSLILYTSTAGFNKNSICYEIWDYAQKVRDGI 223
Query: 247 -----------------DWK---RFQIDTRTVEGIDPSFHEGII----ARYGLDSDVTRV 282
DWK +Q ++ + +V R
Sbjct: 224 IDDPTFLPCIYEAPADADWKDPATWQAACPSMGHTVDLSFYEQECLKAQQVPAYENVFRR 283
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
Q+ + D I ++ N P G D++
Sbjct: 284 LYLNQWTESDSRWL-SSTIWDDCKNLNYPDLAGQPCYAGLDLSSVQD 329
>gi|66394679|ref|YP_240816.1| ORF009 [Staphylococcus phage X2]
gi|62636903|gb|AAX92014.1| ORF009 [Staphylococcus phage X2]
Length = 421
Score = 60.7 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/270 (11%), Positives = 79/270 (29%), Gaps = 23/270 (8%)
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
E+ GRG GK++ + ++ + R ++ + + ++ L T+++ ++ +
Sbjct: 26 EILNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQ 84
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
H F+++ + + + ER + + ++
Sbjct: 85 KVSHLFKVKVSPMEITYIP-----------RGNRIIFRGAQNPERLKSLKDSRFPFSISW 133
Query: 196 INDEASGTPDVINLGILGFLTERN-----ANRFWIMTSNPRRLSGKFYEIFNK--PLDDW 248
I + A + I L +F+ + P+R + + D+
Sbjct: 134 IEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNT 193
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
I F + + + R E G+ +P N +
Sbjct: 194 YVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNNLRIEEIP 250
Query: 309 EPCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
+ D + + D D V
Sbjct: 251 QRQYDTFDNIRNAVDFG-YATDPLAFVRWH 279
>gi|256833517|ref|YP_003162244.1| hypothetical protein Jden_2306 [Jonesia denitrificans DSM 20603]
gi|256687048|gb|ACV09941.1| hypothetical protein Jden_2306 [Jonesia denitrificans DSM 20603]
Length = 474
Score = 60.3 bits (144), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/373 (10%), Positives = 84/373 (22%), Gaps = 47/373 (12%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ + + + ++ R GK L M + G +
Sbjct: 25 PDPWQEHVVRGWMGRRRDGRL----AAGRCGVAVPRQNGKNGTVEITQLHKMVMQ-GRKI 79
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ A+ + S + + +P + +
Sbjct: 80 LHTAHEVKTARKAFLRLASFFENE------------RKYPELYELAKGGIRKTNGQEAIL 127
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT---ERNANRFWIMT 227
E + + DEA D +L + + +F++ T
Sbjct: 128 LTNGGSCEFVARSRGSGRGYTVDDLFCDEAQELTDEQLEALLPTIAAAPSGDPQQFYLGT 187
Query: 228 SNPRRLSGKFYEIFNKP--LDDWKRFQIDTRTVEGIDPSF--HEGIIARYGLDSDVTRVE 283
G + + KR D ++ + + + +
Sbjct: 188 PPGPNSVGDVFVRVRREGVAGKDKRLCWDEWSIPDETHADEALKHWREYAAATNPALGLR 247
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE------GGDNTVVVLR 337
+ + + ++ P E L R D + + V +R
Sbjct: 248 LNITTVEDEKNAMSPDGFCRERLGRWDSADVGSAAVDFTQWGRLKVLAPPSSGKKVFAVR 307
Query: 338 ---RGPVI------------EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
G + H+ + + + + A I + G
Sbjct: 308 FPVDGSGVGLSAALKPSRGCPHVEGIRFSTPSEGTQWLIDWLVERWRSASQIIVDGKGGA 367
Query: 383 --TCDYLEMLGYH 393
L G
Sbjct: 368 GYLVSALRDAGVP 380
>gi|260433350|ref|ZP_05787321.1| phage DNA Packaging Protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417178|gb|EEX10437.1| phage DNA Packaging Protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 427
Score = 60.3 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 51/421 (12%), Positives = 106/421 (25%), Gaps = 69/421 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGIS---------VICLANSETQLKTTLWAEVSKWL 132
I GRG GKT A W+ S G V + + Q++ + S +
Sbjct: 35 IMGGRGAGKTRAGAE---WVRSMVEGAKPFDEGEARRVALVGETFDQVRDVMIFGDSGIM 91
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
P + ++ G
Sbjct: 92 QCSPPDRRPQWKASERKL------------------VWPNGAEAQAFSAHDPEGLRGPQF 133
Query: 193 MAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A DE + + L +T+ PR + +
Sbjct: 134 DAAWVDELAKWKKAGETWDMLQFALRL-GERPRVCVTTTPRNVK--VLKDLLAAPSTVMT 190
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ SF + + ARY + + R E+ G + ++++ A R
Sbjct: 191 HAPTEANRANLAESFLQEVRARYA-GTRLGRQELDGVLLADAEGALWTGSMLDGA--RVG 247
Query: 311 CPDPYAPLIMGCDIAEEGG---DNTVVVL----------RRGPVIEHLFDWSKTDLRTTN 357
+++ D A GG D +V+ +
Sbjct: 248 AVPELDRVVVALDPAVTGGSGADACGIVVVGAQLQGPPEDWRAYVLADRTVQGVGPAGWA 307
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
++++ + ++ + N G + + + V + + R E
Sbjct: 308 RAAIDAMDEFGAERLVAEVNQGGQLVEEVVRQVDPLVPFRAVRASRGKVA-----RAEPV 362
Query: 418 VKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
+ + + L + + + + G S D D L++
Sbjct: 363 AALYEQGRVFHVAGLDALEEQMCQMTARGFEGQG-------------SPDRVDALVWALH 409
Query: 478 E 478
E
Sbjct: 410 E 410
>gi|239828154|ref|YP_002950778.1| hypothetical protein GWCH70_2829 [Geobacillus sp. WCH70]
gi|239808447|gb|ACS25512.1| conserved hypothetical protein [Geobacillus sp. WCH70]
Length = 534
Score = 60.3 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/273 (14%), Positives = 81/273 (29%), Gaps = 34/273 (12%)
Query: 24 IKLSFSNFVL-HFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
I F F G + P Q +FM + + I
Sbjct: 14 IMNDFKLFAKNFIKIVDNNGDTVPFVLNPE--QEQFMGQMGKYN--------------II 57
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GR IG TTL+ +L+ T+P + + + +L+ ++ K LP++ + +
Sbjct: 58 LKGRQIGFTTLSLAYMLYSACTKPDTN-YIIMTHHASVSKSLFVKLKKMYRSLPHEKYPD 116
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
L P ++ L S+ + +TF H +
Sbjct: 117 -----LFPKALLNNRDELYLQNGSRVIIATAQGEDVISGNTFQLIHLSEMAKY----PQD 167
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGK--FYEIFNKPLDDWKRFQIDTRTVEG 260
D I + L + ++ I ++ + + F + + WK
Sbjct: 168 VQDEIIATCIPALAKNESSSIIIESTAYGYNTYQEMFMKAYRDKESVWKAHFYSW----- 222
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ ++ + + R G+ +
Sbjct: 223 LAKAYEKQFKHTFDEAEAWFRANNQGRRMTYED 255
>gi|254240165|ref|ZP_04933487.1| hypothetical protein PA2G_00806 [Pseudomonas aeruginosa 2192]
gi|126193543|gb|EAZ57606.1| hypothetical protein PA2G_00806 [Pseudomonas aeruginosa 2192]
Length = 342
Score = 60.3 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/288 (11%), Positives = 88/288 (30%), Gaps = 25/288 (8%)
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ A ++L M R + ++C + ++ ++ + ++ L ++E+ +
Sbjct: 39 KSHGVAQVLL-DMGARNPLRILCAREIQKSMRDSVHRLLRDYIVKLGLTEFYEVLDTEIR 97
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209
+ + + ++ + +F G + +EA G
Sbjct: 98 ------------GRNGTLFLFSGLQGHTVDSIKSFEGV-----DIVWVEEAQGVCKKSWD 140
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS-FHEG 268
++ + + + + + + P DD +I+ R E
Sbjct: 141 VLIPTIRKDGSEIWLTLNPA-MDTDDTYVRFCAAPDDDVWLCEINWRDNPWFPDVLNQER 199
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIP---LNIIEEALNREPCPDPYAPLIMGCDIA 325
+ A+ + + G+ + L+++E R DP P+ D+
Sbjct: 200 LRAKRSMSQEDYEHIWEGKPRTVAEGAIYRHEILDLMESGRVRPVPYDPLLPVHTVWDLG 259
Query: 326 EEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
D + + ++ D T + +EK I
Sbjct: 260 W--NDAMTIGFVQRGPMDVRIIDYIEDSHRTLDWYVAQIEKRSYRWGI 305
>gi|239621431|ref|ZP_04664462.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239515892|gb|EEQ55759.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 536
Score = 60.3 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 55/400 (13%), Positives = 112/400 (28%), Gaps = 60/400 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR------- 105
WQ + H L + + + K + R GKTTL L W +
Sbjct: 55 PWQQWLL----VHALELLEDGSYRFRKVIVLVARQNGKTTLMGVLAAWWLFVDSNKHPDR 110
Query: 106 -PGISVICL--ANSETQLKTTLWAEVSKWLSLLPNKHWFE---MQSLSLHPAPWYSDVLH 159
P + + + A + K + +V +W + P E + L+ + +
Sbjct: 111 VPPVKFLVVGAAQTLDNAK-GPYNQVKEWCNPAPATDEEEDLVIPDLAAMTQKFVNTNGE 169
Query: 160 CSL--GIDSKHYSTMCRTYSEERPDT--FVGHHNTYGMAIINDEASGTPDVINLGILG-- 213
++ +++ + + F + N + T V + + G
Sbjct: 170 EAIITRSKARYIVRADKNIRAKSAARVVFDELREQHTDDGWNAVSQTTKAVWSSQLWGIS 229
Query: 214 --------------------------FLTERNANRFWIMTSNPRRLSGKFYEIFNK--PL 245
+ ++ G F P+
Sbjct: 230 NAGDYRSVALRKQVDKGRKLVDEWTRLSADGGDPADVFLSGEQDGSFGYFEWSAPDKCPV 289
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
DD + ++ + G+ R EV Q+ DI FI +
Sbjct: 290 DDADAIRQANPSLGYGPMTVMSVRSDIDGMTEAAFRTEVLCQWVTADIIPFINPKMWAGG 349
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE---HLFDWSKTDLRTTNNKISG 362
++ +++ D + T V G + H+ ++ D
Sbjct: 350 IDSRSTIPNENRVVLSVDTS--ADRKTTYVAAAGMRADGLPHVELIARRDGMLWVPHFLD 407
Query: 363 LVEKYRPDAIIIDANNTGARTCDY---LEMLGYHVYRVLG 399
L+ + P I + G D+ L G+ V+ + G
Sbjct: 408 LLRESWPGVCEIAVQSKGCPAVDFIDPLTEKGWTVHLIEG 447
>gi|161613293|ref|YP_001587258.1| hypothetical protein SPAB_01003 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161362657|gb|ABX66425.1| hypothetical protein SPAB_01003 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 443
Score = 60.3 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 48/325 (14%), Positives = 85/325 (26%), Gaps = 40/325 (12%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMST---RPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
A+ GR GKT + + + + RPG+ + + ++ + + +
Sbjct: 27 AVRCGRRWGKTFMLSSAAVTYATAPFKRPGMDIELGG------RVGIFTAEYRQYQEIYD 80
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
K + L + L K + D + I+
Sbjct: 81 KLEEILLPLKKS---FSRQEKRLLLKNGGKIDFWVTN-------DNKLAGRGREYEIILI 130
Query: 198 DEASG------TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
DEA+ ++ I L + T + FY I + +
Sbjct: 131 DEAAFTKSPEMLREIWPKSIKPTLLTTKGRAYVFSTPDGVDEENFFYAICHDKNLGFIEH 190
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREP 310
T + + P E A D V R E +F S E +P
Sbjct: 191 HAPTSSNPFVPPEELEKEEANN--DPRVFRQEFLAEFVDWSAASLFDIRKWFEGENQDQP 248
Query: 311 CPDPY------APLIMGCDIAEEGGDNTVVVL----RRGPVIEHLFDWS--KTDLRTTNN 358
P A + E VV R G + DW + D
Sbjct: 249 VDYPEMCQAVFAVMDTAVKGGSEHDGTAVVYYAVDTRPGIQRLTILDWDVVQIDGALLET 308
Query: 359 KISGLVEKYRPDAIIIDANNTGART 383
+ + ++ + A N
Sbjct: 309 WMPSVFDRLNELSGQCVAINGSLGV 333
>gi|163759067|ref|ZP_02166153.1| Phage DNA Packaging Protein [Hoeflea phototrophica DFL-43]
gi|162283471|gb|EDQ33756.1| Phage DNA Packaging Protein [Hoeflea phototrophica DFL-43]
Length = 492
Score = 60.3 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 61/457 (13%), Positives = 112/457 (24%), Gaps = 68/457 (14%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
W + + WQL + + + GRG GKT A
Sbjct: 74 WIAEFDDQALIANANDWQL-----IARPEQLPPDGDWRSWL---LMGGRGSGKTRAGAEW 125
Query: 98 VLWLMS-TRPG----ISVICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPA 151
V L S PG + +A + + + VS + + + + FE L
Sbjct: 126 VHGLASGAVPGLGRQGRIALVAETFGDAREVMIDGVSGIMGVARDQRPAFEATRRRL--- 182
Query: 152 PWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINL 209
+ DE
Sbjct: 183 -----------------VWPSGAVAQMFSSEDPESLRGPQFDLAWCDELGKWRHARETWD 225
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI 269
+ L R I T+ + K + + F + +
Sbjct: 226 MLQFALRLGQHPRQLITTTP---RATPLMLALVKDIGTRVTRIRTEDNAGNLAAGFLDTV 282
Query: 270 IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
ARYG + + R E+ G+ D +E + R P P +++ D G
Sbjct: 283 RARYG-GTRLGRQELDGELIADREDGLWRREQLEALVVR--KPGPLGRIVVAVDPPASGE 339
Query: 330 DNTVVV--------LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA 381
V+ +S L ++ D ++ + N G
Sbjct: 340 AKHSCCGIVAAGLDAEGRAVVLADGSQEGASPSGWAGAVSRLYRRFDADCVVAEINQGGD 399
Query: 382 RTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKS 441
L + + ++ R E + + + + L +
Sbjct: 400 MVTSVLRTVDST---LPVRQVRATRGKW--LRAEPVAALYEQGRVVHAGHFAALEDQMC- 453
Query: 442 LKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
G + S +S D D L++ E
Sbjct: 454 ----DFGPDG---LSS-----GRSPDRLDALVWALTE 478
>gi|225857863|ref|YP_002739373.1| putative phage terminase, large subunit [Streptococcus pneumoniae
70585]
gi|303255462|ref|ZP_07341526.1| Phage terminase [Streptococcus pneumoniae BS455]
gi|303259344|ref|ZP_07345322.1| Phage terminase [Streptococcus pneumoniae SP-BS293]
gi|303261101|ref|ZP_07347050.1| Phage terminase [Streptococcus pneumoniae SP14-BS292]
gi|303263429|ref|ZP_07349352.1| Phage terminase [Streptococcus pneumoniae BS397]
gi|303265593|ref|ZP_07351493.1| Phage terminase [Streptococcus pneumoniae BS457]
gi|303267848|ref|ZP_07353650.1| Phage terminase [Streptococcus pneumoniae BS458]
gi|225721021|gb|ACO16875.1| putative phage terminase, large subunit [Streptococcus pneumoniae
70585]
gi|302597602|gb|EFL64684.1| Phage terminase [Streptococcus pneumoniae BS455]
gi|302637938|gb|EFL68424.1| Phage terminase [Streptococcus pneumoniae SP14-BS292]
gi|302639762|gb|EFL70219.1| Phage terminase [Streptococcus pneumoniae SP-BS293]
gi|302642544|gb|EFL72889.1| Phage terminase [Streptococcus pneumoniae BS458]
gi|302645033|gb|EFL75280.1| Phage terminase [Streptococcus pneumoniae BS457]
gi|302647202|gb|EFL77426.1| Phage terminase [Streptococcus pneumoniae BS397]
Length = 470
Score = 60.3 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 46/347 (13%), Positives = 96/347 (27%), Gaps = 49/347 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ+ + + A N + + R GK+ L LW + G++++
Sbjct: 43 WQVNLLTSIMAVDKNGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A+ + ++ + +V ++L + + L
Sbjct: 97 AHRISTSHSS-FEKVKRYLEKM------GYVDGEDFSSIRAKGQERIELFDGGGIVQFRT 149
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE-RNANRFWIMTSNPRR 232
RT + + F ++ DEA + +T+ N T
Sbjct: 150 RTSNGGLGEGFD--------LLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPV 201
Query: 233 LSGKFYEIFNKP-------LDDWKRFQID----------TRTVEGIDPSFHEG--IIARY 273
+G + + K W + + I A
Sbjct: 202 SNGTVFTNYRKNCLFGKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAEL 261
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D V+ G +P+ + S I E ++ P + +
Sbjct: 262 GDDKLDHNVQRLGYWPEYNQKSAISETEWNELCVDSMPDLSGK----LFVGVKYGQDGAN 317
Query: 333 V---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + +R + +R N+ I V++ I++D
Sbjct: 318 VALSIAVRTVDERIFVETIDCQSVRNGNDWILDFVKRADVATIVVDG 364
>gi|66395973|ref|YP_240307.1| ORF008 [Staphylococcus phage ROSA]
gi|62636393|gb|AAX91504.1| ORF008 [Staphylococcus phage ROSA]
Length = 421
Score = 60.3 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/269 (11%), Positives = 78/269 (28%), Gaps = 23/269 (8%)
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ GRG GK++ + ++ + R ++ + + ++ L T+++ ++ +
Sbjct: 27 LLNIIAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVIRKTDNTLATSVFEQIKWAIEEQK 85
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
H F+++ + + + ER + + +A I
Sbjct: 86 VTHLFKVKVSPMEITYIP-----------RGNRIIFRGAQNPERLKSLKDSRFPFSIAWI 134
Query: 197 NDEASGTPDVINLGILGFLTERN-----ANRFWIMTSNPRRLSGKFYEIFNK--PLDDWK 249
+ A + I L +F+ + P+R + + D+
Sbjct: 135 EELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQADNTF 194
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
I F + + + R E G+ +P N + +
Sbjct: 195 VHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSG---VVPFNNLRIEEIPQ 251
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
D + + D D V
Sbjct: 252 GQYDTFDNIRNAVDFG-YATDPLAFVRWH 279
>gi|258427139|ref|ZP_05688061.1| terminase large subunit [Staphylococcus aureus A9299]
gi|258445566|ref|ZP_05693748.1| terminase large subunit [Staphylococcus aureus A6300]
gi|258455564|ref|ZP_05703521.1| phage terminase, large subunit [Staphylococcus aureus A5937]
gi|257849917|gb|EEV73876.1| terminase large subunit [Staphylococcus aureus A9299]
gi|257855613|gb|EEV78546.1| terminase large subunit [Staphylococcus aureus A6300]
gi|257862252|gb|EEV85023.1| phage terminase, large subunit [Staphylococcus aureus A5937]
Length = 566
Score = 60.3 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 47/354 (13%), Positives = 87/354 (24%), Gaps = 37/354 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
M+ +E+ F+ P KG+ + P WQ + +
Sbjct: 54 MFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRY 107
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 108 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 166
Query: 136 --------PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 167 PKLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 226
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 227 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 280
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 281 DDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 340
Query: 299 LNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTV---VVLRRGPVIEHLFDW 348
+++ + + P +G D++E L G V W
Sbjct: 341 YPTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSW 394
>gi|260545691|ref|ZP_05821432.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
8038]
gi|260757573|ref|ZP_05869921.1| phage DNA Packaging protein [Brucella abortus bv. 4 str. 292]
gi|260761398|ref|ZP_05873741.1| phage DNA Packaging protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260883379|ref|ZP_05894993.1| phage DNA Packaging protein [Brucella abortus bv. 9 str. C68]
gi|260097098|gb|EEW80973.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
8038]
gi|260667891|gb|EEX54831.1| phage DNA Packaging protein [Brucella abortus bv. 4 str. 292]
gi|260671830|gb|EEX58651.1| phage DNA Packaging protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260872907|gb|EEX79976.1| phage DNA Packaging protein [Brucella abortus bv. 9 str. C68]
Length = 426
Score = 59.9 bits (143), Expect = 8e-07, Method: Composition-based stats.
Identities = 56/445 (12%), Positives = 112/445 (25%), Gaps = 72/445 (16%)
Query: 56 LEFMEVVDAHCLNSVNNPNPE---VFKGAISAGRGIGKTTLNAWLVLWLMSTRPG----- 107
+ + D + + + P I GRG GKT A V + P
Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76
Query: 108 -ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ + + + + S LS+ V
Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-------------------VRPRYEASRR 117
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFW 224
+ + + A DE + P + L + R
Sbjct: 118 RLIWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ T+ + + + F + I RY + + R E+
Sbjct: 178 VTTTP---RAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYA-GTRLGRQEL 233
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLR---- 337
G+ ++ + + IE+ P P A +++ D + + D +V+
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVVAGIDA 291
Query: 338 -RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ + + L + DAI+ + N G
Sbjct: 292 EGVGHVLADESMTMAKPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAED-------PS 344
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMAD--WLEF-ASLINHSGLIQNLKSLKSFIVPNTGEL 453
V KR R E + + + +++ G
Sbjct: 345 VPVLKRRASRGKW--LRAEPVAALYEQGRVRHAGRFPA----LEDEMC----DFAPEG-- 392
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAE 478
+ S +S D D L++ E
Sbjct: 393 -LSS-----GRSPDRLDALVWALGE 411
>gi|332522503|ref|ZP_08398755.1| putative phage terminase, large subunit [Streptococcus porcinus
str. Jelinkova 176]
gi|332313767|gb|EGJ26752.1| putative phage terminase, large subunit [Streptococcus porcinus
str. Jelinkova 176]
Length = 470
Score = 59.9 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 44/347 (12%), Positives = 97/347 (27%), Gaps = 49/347 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ + + A + + + R GKT + L LW + G+ ++
Sbjct: 43 WQKNMLSPIMAIDEDGLWVHQKYGYAI----PRRNGKTEIVYILELWGL--HKGLKILHT 96
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A+ + ++ + ++ K+L + +
Sbjct: 97 AHRISTSHSS-FEKLKKYLEMS------GYVDGEDFISNKAKGQERIEFKSSGSVIQWRT 149
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR- 232
RT + + F ++ DEA + +T+ + + + P
Sbjct: 150 RTSNGGLGEGFD--------LLVIDEAQEYTSEQESALKYTVTDSDNPMTVMCGTPPTMV 201
Query: 233 LSGKFYEIFN-------KPLDDWKRFQIDTRTVEGIDPSFH------------EGIIARY 273
+G +E + K W + + T S++ I A
Sbjct: 202 STGTVFESYRKEVLKGAKKYSGWAEWSVSEMTKIDDVQSWYIANPSMGFHLNERKIEAEL 261
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D ++ G +P + S I + + + P + I N
Sbjct: 262 GDDEIDHNIQRLGYWPTFNQKSVISEKEWGKLKVEQTPELSGK----LFVGIKFGQDGNN 317
Query: 333 V---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + R + +R I ++ +++D
Sbjct: 318 VSMSIAARTKENKIFVESIDCLSVRNGTQWIIDFLKSADIAKVVVDG 364
>gi|261213600|ref|ZP_05927881.1| phage DNA Packaging protein [Brucella abortus bv. 3 str. Tulya]
gi|260915207|gb|EEX82068.1| phage DNA Packaging protein [Brucella abortus bv. 3 str. Tulya]
Length = 426
Score = 59.9 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 54/439 (12%), Positives = 112/439 (25%), Gaps = 60/439 (13%)
Query: 56 LEFMEVVDAHCLNSVNNPNPE---VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+ + D + + + P I GRG GKT A V + P
Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPP----- 71
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A + + + ++ + + L + +
Sbjct: 72 FAGKPSGHIALVGETFNDAREMMVDGPSGILSVSRLVRPRYE--------ASRRRLIWDN 123
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNP 230
+ + A DE + P + L + R + T+
Sbjct: 124 GAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP- 182
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
+ + + F + I RY + + R E+ G+ +
Sbjct: 183 --RAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVE 239
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLR-----RGPVI 342
+ + + IE+ P P A +++ D + + D +V+ +
Sbjct: 240 ERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHV 297
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR 402
+ + L + DAI+ + N G V KR
Sbjct: 298 LADESMTMAKPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAED-------PSVPVLKR 350
Query: 403 AVDLEFCRNRRTELHVKMAD--WLEF-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKR 459
R E + + + +++ G + S
Sbjct: 351 RASRGKW--LRAEPVAALYEQGRVRHAGRFPA----LEDEMC----DFAPEG---LSS-- 395
Query: 460 VKGAKSTDYSDGLMYTFAE 478
+S D D L++ E
Sbjct: 396 ---GRSPDRLDALVWALGE 411
>gi|203288763|ref|YP_002223713.1| hypothetical protein BDU_2013 [Borrelia duttonii Ly]
gi|201084613|gb|ACH94190.1| uncharacterized conserved protein [Borrelia duttonii Ly]
Length = 398
Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/315 (13%), Positives = 93/315 (29%), Gaps = 26/315 (8%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ PE + RG GKT A + L + G + + + + ++
Sbjct: 9 VYYNAYKSKPEAEIFIYYSSRGTGKTYDIATVNLERKFAKDGGDTLAVRKKKNKTTQSIH 68
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ + LS + F + + + E DT
Sbjct: 69 KEILELLSRYNLRREFTISKAKIETKKLIYGRKRAFVF--------------EGGHDTTD 114
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
+ + +EA+ + ++ + ER + PR I N+
Sbjct: 115 LKSYAHFKDLWLEEANQFTESDIEKLIPTMRERGGRIYMSSNPVPRSHWLYKRYIANEDN 174
Query: 246 DDWKRFQIDTRTVEGID----PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ R ++ ++ E Y + R+EV G+ + FI
Sbjct: 175 PSVCVIKSTYRDNPFLNGGDVNAWLEKQKLAYHGNDIGFRIEVLGEEFEFGTARFIKEFT 234
Query: 302 I--EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL-RRGPVIEHLFDWSKTDLRTTNN 358
I E ++R G I +++ R G + + + + + ++
Sbjct: 235 ICDESLISRVQ-----GSFYTGIHIKGNRVCLIEILVGRIGYLPLTVVTNASSKVLLSSE 289
Query: 359 KISGLVEKYRPDAII 373
++R ++
Sbjct: 290 DYELECARFRGTFVL 304
>gi|149203834|ref|ZP_01880803.1| Putative large terminase [Roseovarius sp. TM1035]
gi|149142951|gb|EDM30993.1| Putative large terminase [Roseovarius sp. TM1035]
Length = 419
Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 51/424 (12%), Positives = 106/424 (25%), Gaps = 75/424 (17%)
Query: 82 ISAGRGIGKTTLNAWLV------LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V M + + + + Q++ + S L+
Sbjct: 27 IMGGRGAGKTRAGAEWVRSEVEGARPMDSGRCKRIALVGETIDQVREVMIFGESGILACS 86
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P E Q+ G
Sbjct: 87 PPDRRPEWQATRKRL------------------IWPNGAVAQAFSAHDPEGLRGPQFDGA 128
Query: 196 INDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + L A R + T+ R G +I P +
Sbjct: 129 WVDELAKWKRARETWDMLQFGLRLGEAPRVCVTTTP--RNVGVLKDILATPS------TV 180
Query: 254 DTRTVEGIDPSFHEG----IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
+ + + + + + R E+ G + D+ ++E A R
Sbjct: 181 TSSAPTEANRAHLAESFLDEVRARYAGTRLGRQELDGLLIDEAEDALWSPAMLEAA--RV 238
Query: 310 PCPDPYAPLIMGCDI---AEEGGDNTVVVL----------RRGPVIEHLFDWSKTDLRTT 356
+ +++ D D +++ + S
Sbjct: 239 DTLPEFDRVVVAVDPPVSGHAASDECGIIVVGAITRGPVQDWRAYVLADASVSAASPARW 298
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
+ E + + ++ + N G + + V + R E
Sbjct: 299 ARAVIRARELWGAERVVAEVNQGGDLVEQVIRQVDPLVPLRKVHASRGKVA-----RAEP 353
Query: 417 HVKMADWLEFASLINHSGL--IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
+ + + + GL +++ + G +G S D D L++
Sbjct: 354 VAALYE---QGRVHHARGLGTLEDQMCA----MTARGY--------EGRGSPDRVDALVW 398
Query: 475 TFAE 478
+
Sbjct: 399 ALTD 402
>gi|297591009|ref|ZP_06949647.1| terminase large subunit [Staphylococcus aureus subsp. aureus MN8]
gi|297575895|gb|EFH94611.1| terminase large subunit [Staphylococcus aureus subsp. aureus MN8]
Length = 563
Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/339 (11%), Positives = 79/339 (23%), Gaps = 36/339 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 REALIFMGRKNGKTTTISGVANYGVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 PN--------KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + P SD + + +
Sbjct: 164 PILSREFRPLRDEIHYDKTISKIMPQASDSDKLDGLNTHIGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
+ I + + R + +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEM------GRDILDGVIEDERTFYYLASLDDD 277
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGL------DSDVTRVEVCGQFPQQDIDSFI 297
+ E + + + + F D SFI
Sbjct: 278 DDMN-DSSNWIKANPNLGVSIDLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFI 336
Query: 298 PLNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTVVV 335
+++ + D P +G D++E
Sbjct: 337 DYQTLQKNNDVIALDDLEGRPCTIGYDLSETEDFTAACA 375
>gi|49483696|ref|YP_040920.1| terminase large subunit [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257432452|ref|ZP_05608815.1| terminase large subunit [Staphylococcus aureus subsp. aureus E1410]
gi|49241825|emb|CAG40517.1| terminase large subunit [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257283331|gb|EEV13463.1| terminase large subunit [Staphylococcus aureus subsp. aureus E1410]
Length = 566
Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/339 (11%), Positives = 79/339 (23%), Gaps = 36/339 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 54 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 107
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 108 REALIFMGRKNGKTTTISGVANYGVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 166
Query: 136 PN--------KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + P SD + + +
Sbjct: 167 PILSREFRPLRDEIHYDKTISKIMPQASDSDKLDGLNTHIGIFDEIHEFKDYKLISVIKN 226
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
+ I + + R + +
Sbjct: 227 SRAARLQPLLIYITTAGYQLDGPLVDMVEM------GRDILDGVIEDERTFYYLASLDDD 280
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGL------DSDVTRVEVCGQFPQQDIDSFI 297
+ E + + + + F D SFI
Sbjct: 281 DDMN-DSSNWIKANPNLGVSIDLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFI 339
Query: 298 PLNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTVVV 335
+++ + D P +G D++E
Sbjct: 340 DYQTLQKNNDVIALDDLEGRPCTIGYDLSETEDFTAACA 378
>gi|307126229|ref|YP_003878260.1| phage terminase large subunit [Streptococcus pneumoniae 670-6B]
gi|306483291|gb|ADM90160.1| phage terminase, large subunit, putative [Streptococcus pneumoniae
670-6B]
gi|321157162|emb|CBW39147.1| Phage terminase [Streptococcus phage 11865]
Length = 470
Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/347 (12%), Positives = 96/347 (27%), Gaps = 49/347 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ+ + + A + + + R GK+ L LW + G++++
Sbjct: 43 WQINLLTSIMAVDKDGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A+ + ++ + +V ++L + + L
Sbjct: 97 AHRISTSHSS-FEKVKRYLEKM------GYVDGEHFSSIRAKGQERIELFDGGGIVQFRT 149
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE-RNANRFWIMTSNPRR 232
RT + + F ++ DEA + +T+ N T
Sbjct: 150 RTSNGGLGEGFD--------LLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPV 201
Query: 233 LSGKFYEIFNK-------PLDDWKRFQID----------TRTVEGIDPSFHEG--IIARY 273
+G + + K W + + I A
Sbjct: 202 SNGTVFTNYRKTCLFGKGKYSGWAEWSVSEEKEIDDVEAWYNSNPSMGYHLNERKIEAEL 261
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D V+ G +P+ + S I E ++ P + +
Sbjct: 262 GDDKLDHNVQRLGYWPEYNQKSAISETEWNELCVDSMPDLSGK----LFVGVKYGQDGAN 317
Query: 333 V---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + +R + +R N+ I V++ I++D
Sbjct: 318 VALSIAVRTVDERIFVETIDCQSVRNGNDWILDFVKRADVATIVVDG 364
>gi|160898677|ref|YP_001564259.1| hypothetical protein Daci_3236 [Delftia acidovorans SPH-1]
gi|160364261|gb|ABX35874.1| protein of unknown function DUF264 [Delftia acidovorans SPH-1]
Length = 428
Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/445 (12%), Positives = 107/445 (24%), Gaps = 54/445 (12%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ S P F+ + AG G GKT + + P I+ A S Q++
Sbjct: 9 NVPQSRFLSLPHKFRAFV-AGFGSGKTWVGCSGLSAHAWEFPRINAGYFAPSYPQIRDIF 67
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + + W + + + Y T S +RP++
Sbjct: 68 FPTIEEV-----AHDWGLRTEIR--------ESNKEVHLYSGRQYRTTVICRSMDRPESI 114
Query: 185 VGHH-NTYGMAIINDEASGTPDVINLGILGFLT--ERNANRFWIMTSNPRRLSGKFYEIF 241
VG + ++ A + I+ + +T+ P +
Sbjct: 115 VGFKIGQALVDELDVMAKQKAEQAWRKIIARMRYNVDGLKNGVDVTTTPEGFKFTHQQFV 174
Query: 242 NKPLDD------WKRFQIDTRTV-EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
D + Q T + + + + Y + + G F
Sbjct: 175 KAVQDKPELAKLYGLIQASTFENAKNLPADYIPSLFDSYPK--QLIDAYLRGLFVNLTSG 232
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR 354
S P + + + P+++G D VLR G + D
Sbjct: 233 SVYP-DFDRKLNHSFESLQEGEPVMLGMDFNRLHMAAVAYVLRDGWPVAVDEITDGRDTP 291
Query: 355 TTNNKISGLVEKYRPDAIII-DANNTGART-------CDYLEMLGYHVYRVLGQKRAVDL 406
+ + DA+ + + L V D
Sbjct: 292 YMARLFRERYQDKGHAVTVYPDASGQNSSSKNASESDLSILRDHNLTVQVNGTNPAVADR 351
Query: 407 EFCRN---RRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
N E ++ + L + L+ G + G
Sbjct: 352 INAVNALILNGEGARRLK--VNTLRCP---KLTEALEQQ---AYDKNGL----PDKSSGV 399
Query: 464 KSTDYSDG--LMYTFAENPPRSDMD 486
D + +
Sbjct: 400 DH--VIDAAGYPIAYMWPIVKKQAA 422
>gi|213027436|ref|ZP_03341883.1| Phage protein P [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
Length = 222
Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 38/140 (27%), Gaps = 18/140 (12%)
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY--------- 315
E + D + +F F + ++ + Y
Sbjct: 80 DIEQLKRENSADD--FKNLFMCEFVDDKASVFPFEELQRCMVDTLEEWEDYAPFAANPFG 137
Query: 316 -APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR 368
P+ +G D + G VVL I W D T I L EKY
Sbjct: 138 SRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYN 197
Query: 369 PDAIIIDANNTGARTCDYLE 388
+ I IDA G +
Sbjct: 198 VEYIGIDATGLGVGVFQLVR 217
>gi|22855048|ref|NP_690654.1| hypothetical protein SPP1p003 [Bacillus phage SPP1]
gi|1729903|sp|P54308|TERL_BPSPP RecName: Full=Large terminase protein; AltName: Full=DNA-packaging
protein G2P; AltName: Full=Terminase large subunit
gi|15466|emb|CAA39537.1| terminase [Bacillus phage SPP1]
gi|2764840|emb|CAA66573.1| unnamed protein product [Bacillus phage SPP1]
Length = 422
Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/341 (15%), Positives = 111/341 (32%), Gaps = 32/341 (9%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
K + GRG K+T A ++ LM P I+ + + ++ +++ ++ + + +L
Sbjct: 27 LKYVLKGGRGSAKSTHIAMWIILLMMMMP-ITFLVIRRVYNTVEQSVFEQLKEAIDMLEV 85
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
H +++ L G D ++ + I
Sbjct: 86 GHLWKVSKSPLRLTYIPRGNSIIFRGGD-----------DVQKIKSIKASKFPVAGMWIE 134
Query: 198 DEASGTPDVINLGILGF-----LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF- 251
+ A + I L F+ + P+R ++FN F
Sbjct: 135 ELAEFKTEEEVSVIEKSVLRAELPPGCRYIFFYSYNPPKRKQSWVNKVFNSSFLPANTFV 194
Query: 252 -QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN--IIEEALNR 308
+ +F E + R E G+ +P IEE +
Sbjct: 195 DHSTYLQNPFLSKAFIEEAEEVKRRNELKYRHEYLGEALGSG---VVPFENLQIEEGIIT 251
Query: 309 EPCPDPYAPLIMGCDIAEEGGDNTVVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLV 364
+ + + G D G D V I + + D + + + + V
Sbjct: 252 DAEVARFDNIRQGLDFG-YGPDPLAFVRWHYDKRKNRIYAIDELV--DHKVSLKRTADFV 308
Query: 365 EKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
K + ++ I A+++ R+ D L+ L + + R+ G K+ D
Sbjct: 309 RKNKYESARIIADSSEPRSIDALK-LEHGINRIEGAKKGPD 348
>gi|269203619|ref|YP_003282888.1| putative phage terminase, large subunit [Staphylococcus aureus
subsp. aureus ED98]
gi|262075909|gb|ACY11882.1| putative phage terminase, large subunit [Staphylococcus aureus
subsp. aureus ED98]
Length = 563
Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/339 (11%), Positives = 77/339 (22%), Gaps = 36/339 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 REALIFMGRKNGKTTTISGVANYGVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 PN--------KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + P SD + + +
Sbjct: 164 PILSREFRPLRDEIHYDKTISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
+ I + + R + +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEM------GRDILDGVIEDERTFYYLASLDDD 277
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARY------GLDSDVTRVEVCGQFPQQDIDSFI 297
+ E + + + + F D SFI
Sbjct: 278 DDIN-DSSNWIKANPNLGVSIDLEEMKEEWKKAKRTPAERGDFITKRFNIFANNDEMSFI 336
Query: 298 PLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+++ P +G D++E
Sbjct: 337 DYPTLQKNNETVSLEELEGRPCTIGYDLSETEDFTAACA 375
>gi|12719430|ref|NP_075501.1| terminase large subunit [Staphylococcus phage phiSLT]
gi|12697860|dbj|BAB21732.1| terminase large subunit [Staphylococcus phage phiSLT]
Length = 563
Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 86/354 (24%), Gaps = 37/354 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 KEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 --------PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + + P SD + + +
Sbjct: 164 PKLRENFRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YE 239
+ I + + R +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDD 277
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+W + + +D E R + + F D SFI
Sbjct: 278 DDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFID 337
Query: 299 LNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTV---VVLRRGPVIEHLFDW 348
+++ + P +G D++E L G V W
Sbjct: 338 YPTLQKNNEIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSW 391
>gi|134288625|ref|YP_001111081.1| gp2, phage terminase, large subunit, putative [Burkholderia phage
phi644-2]
gi|134132010|gb|ABO60807.1| gp2, phage terminase, large subunit, putative [Burkholderia phage
phi644-2]
Length = 571
Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/396 (13%), Positives = 103/396 (26%), Gaps = 42/396 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW--LVLWLMSTRPGIS 109
WQL + + R GK+ + A + ++ G
Sbjct: 85 EPWQLFGLACTFGWVRKKTGFRRFRESYWEVP--RKNGKSVIAAGVGIAMFTADDEFGAE 142
Query: 110 VICLANSETQLKTTLWAE--VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
V C A +E Q + K LL E+ + +L+ S
Sbjct: 143 VYCGATTERQAWEVFRPARLMVKRSPLLIEHLGIEVNAQALNRPEDGSRFEPIIGNPGDG 202
Query: 168 HYSTMCRTYSEERPDTFV---------GHHNTYGMAIINDEASGTPDVINLGILGFLTER 218
+ DT G M +I + R
Sbjct: 203 ASPSCAIEDEYHEHDTNAQYETMLTGMGARRQPLMFVITTAGANIEGPCYD------KRR 256
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA------- 271
T L G + I DDW ++ + I S ++ +
Sbjct: 257 QVIEMLEGTVPDDELFGWIWTI--DEDDDWTDPRVLAKANPNIGISVYQEYLESQQQRAI 314
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP--LIMGCDIAEEGG 329
+ ++ + + + F L + +R + + ++ D+A +
Sbjct: 315 KSARFTNTFKTKHLNVWTSAKAGYF-NLEDWKACEDRSLSLEQFEGQDCVLALDMARKLD 373
Query: 330 DNTV-------VVLRRGPVIEHLFDWSKTDLRTTNN--KISGLVEKYRPDAIIIDANNTG 380
N++ + RR W D +++ + + +I+ +
Sbjct: 374 LNSMARLFWRDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNHGFLIETDGAE 433
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
+ LE R Q +D N +L
Sbjct: 434 IDYREILEEAKEANRRCPVQCTPLDPHGATNLSHQL 469
>gi|261495269|ref|ZP_05991723.1| bacteriophage terminase large subunit [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261309094|gb|EEY10343.1| bacteriophage terminase large subunit [Mannheimia haemolytica
serotype A2 str. OVINE]
Length = 406
Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/301 (13%), Positives = 80/301 (26%), Gaps = 28/301 (9%)
Query: 84 AGRGIGKT----TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT ++A ++C L+ + EV + + P
Sbjct: 26 GGRGSGKTRAFAKMSAVSAYKRAMQGESGVILCGREFMNSLEESSLEEVKQAIKSEPFLA 85
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
F + + Y ++ + + + DE
Sbjct: 86 NF-----------FDVGEKYVRTKDGRISYVFSGLRHNLDSIKSKARI-----LIAWIDE 129
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A + ++ + E N+ W+ + R S P ++ ++ +
Sbjct: 130 AETVSETAWRKLIPTVRENNSE-IWVTWNPENRGSATDTRFRQNPPENSCIIEMSYQDNP 188
Query: 260 GIDPSFHEGIIARYGL-DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ + D R G + + E + P PD P
Sbjct: 189 WFPDVLEQERLNDKQRLDDATYRWIWEGAYLEASEAQIFRGKYQE--MEFVPNPDFDGPY 246
Query: 319 IMGCDIAEEGGDNTVV--VLRRGPVIEHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIID 375
G D V + G + +L T + I+ V + + D
Sbjct: 247 Y-GLDFGFAQDPTAAVKCWVFNGDLYIEFEAGKVGLELDDTADFIAKGVPQIADHVVRAD 305
Query: 376 A 376
+
Sbjct: 306 S 306
>gi|169344384|ref|ZP_02865357.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
gi|169297509|gb|EDS79616.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
Length = 415
Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 31/303 (10%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
G G GK+ +++ PG + + + LK +++A W
Sbjct: 31 GGGGSGKSHFVVQKMIYKYLKYPGRKCLVVRKVNSTLKESIFALF-----RSVLSDWQIY 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + ++ + +K E+ + G I+ +E +
Sbjct: 86 DECKI-------NKTDLTIELPNKSLFIFKGIDDPEKIKSIAGI-----DDIVVEECTEI 133
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDWKRFQIDTRTVEG 260
+ + L +N + NP S Y+ + K D + +
Sbjct: 134 DEFDFDQLNLRLRSKNPYNQIHVMFNPVSKSNWVYKRWFKNGYDTKDTIVLHTTYKNNKF 193
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA--PL 318
+ + + ++ + R+ G+F +D I N EE+ + +
Sbjct: 194 LPKDYIDSLLKLEKDNPVYFRIYALGEF--ATLDKLIYTNWKEESFDYKEILKNNRNTKA 251
Query: 319 IMGCDIAEEGGDNTVVV-----LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
I D V + + I F KI L YR + I+
Sbjct: 252 IFSLDFGYTNDPTAFVCSIIDKINKKLWIFDEFQEKGLLNDEIAEKIIDLG--YRKEVIV 309
Query: 374 IDA 376
D+
Sbjct: 310 CDS 312
>gi|170751343|ref|YP_001757603.1| hypothetical protein Mrad2831_4961 [Methylobacterium radiotolerans
JCM 2831]
gi|170657865|gb|ACB26920.1| protein of unknown function DUF264 [Methylobacterium radiotolerans
JCM 2831]
Length = 432
Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 54/443 (12%), Positives = 104/443 (23%), Gaps = 66/443 (14%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKG------AISAGRGIGKTTLNAWLVLWLM------ST 104
+ + + L+ A+ GRG GKT A V L +
Sbjct: 17 DLLRALAGDWLHQARPDQLPPPDAEPWTTWAVIGGRGSGKTRTGAEWVDALARGDPAFAA 76
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
P + + + ++ + + + W
Sbjct: 77 APVGRIALVGETHLDVRDVMVEG---------PSGLLGLPARGRARPTWSPSRRRVD--- 124
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANR 222
+ + A DEA+ P+ + L A
Sbjct: 125 -----WSNGAVALAFSAEEPDALRGPQFGAAWCDEAAKWRRPEAAFDMLQFGLRL-GARP 178
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
++T+ PR + + + T + + + R
Sbjct: 179 RNLVTTTPRPVPLIRRLLA---DPRTVVSRARTHDNAAHLAPDFLQQVVGRYAGTRLGRQ 235
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVL--R 337
E+ G+ D+ +E +R +++ D + D +V R
Sbjct: 236 ELDGELIADRDDALWTRAALE--ADRIAAAPDLGRIVVAVDPPAASGARSDACGIVAAGR 293
Query: 338 RGPVIEHLF--DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
G L ++ + L + R DA++++ N G L V
Sbjct: 294 AGGHAYVLADASLARATPQAWAAAALALYHRLRADALVVEVNQGGEMAAAVLGQCDPAVP 353
Query: 396 RVLGQKRAVDLEFCRNRRTELH--VKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGEL 453
R E + + L L G
Sbjct: 354 VTRVHA---TRGKY--LRAEPVSLLYARGLVHHVGAFP--ALEDELC-----DFGPDGL- 400
Query: 454 AIESKRVKGAKSTDYSDGLMYTF 476
G S D D L++
Sbjct: 401 -------SGGASPDRLDALVWAL 416
>gi|219723512|ref|YP_002476767.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
gi|219694406|gb|ACL34930.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
Length = 396
Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/395 (9%), Positives = 108/395 (27%), Gaps = 45/395 (11%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ P + RG GKT A + L + G + + + + ++
Sbjct: 8 IYVNAYKEKPNAEIFIYYSSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIH 67
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ + LS + +F + + SL K + ++
Sbjct: 68 KEILELLSRYNLRKFFNISKAKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYA 118
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
+ + +EA+ ++ + E+ + P+ + N+
Sbjct: 119 -----HFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLANQDN 173
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ R ++ E + + Y + R+EV G+ I
Sbjct: 174 PAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGEEFDFGTARLIKKFN 233
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI-EHLFDWSKTDLRTTNNKI 360
+ + G I +++ R + + + + + +
Sbjct: 234 V---CGPDIISRANGSYYTGIHIKGNRICFLEILVGRISHLPVVIVTNACSKVLLSKADY 290
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ ++ G +V+ G+ + + N +
Sbjct: 291 QAEINNFK-----------GTFVLPAAREELKYVFSRFGRGTLLAKKR--NL-----YSL 332
Query: 421 ADW-----LEFASLINHSGLIQNLKSLKSFIVPNT 450
+D+ L ++ + +I + + ++
Sbjct: 333 SDYLIPANLSVVNIPETNDVISEFNETEYYYDESS 367
>gi|170739523|ref|YP_001768178.1| hypothetical protein M446_1219 [Methylobacterium sp. 4-46]
gi|168193797|gb|ACA15744.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
Length = 491
Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 61/448 (13%), Positives = 112/448 (25%), Gaps = 64/448 (14%)
Query: 55 QLEFM----EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----- 105
Q E + + A N P V + GR GKT A L +
Sbjct: 37 QGEPLTAAERAIYAALTGRENEPGAPVEEVWAIIGRRGGKTRAMAVLAAYFAVLCDWDDV 96
Query: 106 --PGISV---ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC 160
PG + A++ K + + ++ + H +D L
Sbjct: 97 LAPGERGSLPLIAASTYQAGKALSY----------IRGIFDHVEGFAGHVTGQTADTLSL 146
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
G+D + RT V + ++ I + L
Sbjct: 147 DTGVDIEVRPASFRTSRGGT---LVAALCDEVAFWRVEGSANPDREILAALRPGLATTGG 203
Query: 221 NRFWIMTSNPRRLSG---KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
I + +R + + + +RT+ + Y D+
Sbjct: 204 PLCIISSPYAKRGELYGAFRRDFGPEGDPAVLVAKAPSRTMNPTLAESV--VARAYARDA 261
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEAL--NREPCPDPYAPLIMGCDIAEEGG-DNTVV 334
R E +F D FI + +E E P D A G D+ +
Sbjct: 262 AAARAEYGAEFRDDVED-FISIETVEACTVPASENLPVERVRYHAFVDPAGGSGKDSMTL 320
Query: 335 VLRR---GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
+ G V+ + I G
Sbjct: 321 AIAHQADGIVVLDRVMERVPPFSPQA--VVAEFAAVLKAYRITAVTGD---------RWG 369
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWL--EFASLINHSGLIQNLKSLKSFIVPN 449
R + + E ++E++ L A L++ L L +L+
Sbjct: 370 GEWPREAFRDHGIGYELADMPKSEIYQAALPLLTSRTAQLLDLPKLKAQLTALERRTARG 429
Query: 450 TGELAIESKRVKG----AKSTDYSDGLM 473
R + + D ++ +
Sbjct: 430 G--------RDRIDHPPGEHDDVANAVA 449
>gi|163735142|ref|ZP_02142578.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149]
gi|161391600|gb|EDQ15933.1| hypothetical protein RLO149_23000 [Roseobacter litoralis Och 149]
Length = 267
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 41/265 (15%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
P WQ M + A R GK+T + +P
Sbjct: 29 PPDPWQRSLMNSTSDV--------------IMVLASRRSGKSTTVGVMAG-QELAKPDHQ 73
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
VI L+ + Q L+A+++ + +++ + + + +
Sbjct: 74 VIILSPTLAQ-SQLLFAKIAFTWEKMA----LPIETRRRTMTELHLKNGSSVVCVPAGQD 128
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
R Y + + DEA+ PD L+ N + +
Sbjct: 129 GEGARGYGVKNG------------ILAFDEAAFIPD---KVFGATLSIAEDNAKTVFITT 173
Query: 230 PRRLSGKFYEIF--NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
P SGK YE++ + + +R + + + + R L VE Q
Sbjct: 174 PGGKSGKAYEMWTNHDLYPEVERIRACSLDLPRMAKLV---ARQRKTLSKMEFDVEHGLQ 230
Query: 288 FPQQDIDSFIPLNIIEEALNREPCP 312
+ F + I A P
Sbjct: 231 WM-GRGTPFFDPDTIRAAYTDTPEL 254
>gi|193071720|ref|ZP_03052620.1| putative phage terminase, large subunit [Escherichia coli E110019]
gi|192954982|gb|EDV85485.1| putative phage terminase, large subunit [Escherichia coli E110019]
Length = 553
Score = 59.2 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/450 (11%), Positives = 92/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + +
Sbjct: 41 DREVVERFIAFSRVCPHVKGAMRGSPIELEP--WQQFAFACILGFKVKATGRRKYTSAFI 98
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
+ R K+T A L W + G I A ++ + +
Sbjct: 99 EVP--RKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRR 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKP 244
+ I S + + I+ S + ++
Sbjct: 217 PEGLLFAITTSGSNV--------VSACKQHYDYCCQILDGEEVNESMFVLIYELDDESEV 268
Query: 245 LDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSD--VTRVEVCGQFPQQDIDSFIPLNI 301
D + + +D I G+ S + + Q
Sbjct: 269 DDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGATPWMGNGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV--------------------------- 334
E A G D++ ++V
Sbjct: 329 AECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPAN 388
Query: 335 ----VLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V R+ + D + I EK+ + D N L+
Sbjct: 389 KNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFHIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRVL-----GQKRAVDLEFCRNRR 413
G+ V A E NRR
Sbjct: 448 GAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 477
>gi|254718736|ref|ZP_05180547.1| Phage DNA packaging protein [Brucella sp. 83/13]
Length = 411
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/416 (12%), Positives = 106/416 (25%), Gaps = 65/416 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + P + + + + + S LS+
Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
V + + + A
Sbjct: 87 RL-------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAA 127
Query: 196 INDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + P + L + R + T+ + +
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMR 184
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ F + I RY + + R E+ G+ ++ + + IE+ P
Sbjct: 185 TVENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVLRR-----GPVIEHLFDWSKTDLRTTNNKISGLVE 365
P A +++ D + + D +V+ + + + L
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYH 301
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--W 423
+ DAI+ + N G L V + + R E + +
Sbjct: 302 THEADAIVAEVNKGGEMVAAVLAAEDSSVPVLKRRASRGKW-----LRAEPVAALYEQGR 356
Query: 424 LEF-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ +++ G + S +S D D L++ E
Sbjct: 357 VRHAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 396
>gi|312438081|gb|ADQ77152.1| terminase large subunit [Staphylococcus aureus subsp. aureus TCH60]
Length = 563
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/339 (11%), Positives = 79/339 (23%), Gaps = 36/339 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 51 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 104
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 105 REALIFMGRKNGKTTTISGVANYGVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 163
Query: 136 PN--------KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + P SD + + +
Sbjct: 164 PILSREFRPLRDEIHYDKTISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 223
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
+ I + + R + +
Sbjct: 224 SRAARLQPLLIYITTAGYQLDGPLVDMVEM------GRDILDGVIEDERTFYYLASLDDD 277
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGL------DSDVTRVEVCGQFPQQDIDSFI 297
+ E + + + + F D SFI
Sbjct: 278 DDMN-DSSNWIKANPNLGVSIDLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFI 336
Query: 298 PLNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTVVV 335
+++ + D P +G D++E
Sbjct: 337 DYQTLQKNNDVIALDDLEGRPCTIGYDLSETEDFTAACA 375
>gi|282911089|ref|ZP_06318891.1| terminase large subunit [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282324784|gb|EFB55094.1| terminase large subunit [Staphylococcus aureus subsp. aureus
WBG10049]
Length = 566
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/339 (11%), Positives = 79/339 (23%), Gaps = 36/339 (10%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ +E+ F+ P KG+ + P WQ + +
Sbjct: 54 VFDEELAHRPIRFIEKFCKP--SKGSKRQLVLQP--WQHFIIGSLFGWVHKETK--LRRF 107
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ I GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 108 REALIFMGRKNGKTTTISGVANYGVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKAS 166
Query: 136 PN--------KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDT 183
P + P SD + + +
Sbjct: 167 PILSREFRPLRDEIHYDKTISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKN 226
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
+ I + + R + +
Sbjct: 227 SRAARLQPLLIYITTAGYQLDGPLVDMVEM------GRDILDGVIEDERTFYYLASLDDD 280
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGL------DSDVTRVEVCGQFPQQDIDSFI 297
+ E + + + + F D SFI
Sbjct: 281 DDMN-DSSNWIKANPNLGVSIDLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFI 339
Query: 298 PLNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTVVV 335
+++ + D P +G D++E
Sbjct: 340 DYQTLQKNNDVIALDDLEGRPCTIGYDLSETEDFTAACA 378
>gi|237507956|ref|ZP_04520671.1| putative phage terminase, large subunit [Burkholderia pseudomallei
MSHR346]
gi|235000161|gb|EEP49585.1| putative phage terminase, large subunit [Burkholderia pseudomallei
MSHR346]
Length = 572
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/396 (13%), Positives = 103/396 (26%), Gaps = 42/396 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW--LVLWLMSTRPGIS 109
WQL + + R GK+ + A + ++ G
Sbjct: 85 ERWQLFGLACTFGWVRKKTGFRRFRESYWEVP--RKNGKSVIAAGVGIAMFTADDEFGAE 142
Query: 110 VICLANSETQLKTTLWAE--VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
V C A +E Q + K LL E+ + +L+ S
Sbjct: 143 VYCGATTERQAWEVFRPARLMVKRSPLLIEHLGIEVNAQALNRPEDGSRFEPIIGNPGDG 202
Query: 168 HYSTMCRTYSEERPDTFV---------GHHNTYGMAIINDEASGTPDVINLGILGFLTER 218
+ DT G M +I + R
Sbjct: 203 ASPSCAIEDEYHEHDTNAQYETMLTGMGARRQPLMFVITTAGANIEGPCYD------KRR 256
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA------- 271
T L G + I DDW ++ + I S ++ +
Sbjct: 257 QVIEMLEGTVPDDELFGWIWTI--DEDDDWTDPRVLAKANPNIGISVYQEYLESQQQRAI 314
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP--LIMGCDIAEEGG 329
+ ++ + + + F L + +R + + ++ D+A +
Sbjct: 315 KSARFTNTFKTKHLNVWTSAKAGYF-NLEDWKACEDRSLSLEQFEGQDCVLALDMARKLD 373
Query: 330 DNTV-------VVLRRGPVIEHLFDWSKTDLRTTNN--KISGLVEKYRPDAIIIDANNTG 380
N++ + RR W D +++ + + +I+ +
Sbjct: 374 LNSMARLFWRDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAERYQAWVNHGFLIETDGAE 433
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
+ LE R Q +D N +L
Sbjct: 434 IDYREILEEAKEANRRCPVQCTPLDPHGATNLSHQL 469
>gi|333004961|gb|EGK24481.1| phage Terminase family protein [Shigella flexneri VA-6]
Length = 472
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/419 (11%), Positives = 87/419 (20%), Gaps = 68/419 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + + + R K+T A L W + G I
Sbjct: 9 EPWQQFAFACILGFKVKATGRRKYTSAFIEVP--RKNAKSTTAAILANWFLIMENGQQDI 66
Query: 112 CLANSETQLKTTLWAEVSKWL--------SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
A ++ + + + H + P +
Sbjct: 67 YTAAVSRDQARIVFDDARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGT 126
Query: 164 IDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
S + + + +G + I S + +
Sbjct: 127 NPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNV--------VSACKQHY 178
Query: 220 ANRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYG 274
I+ S + N+ D + + +D I G
Sbjct: 179 DYCCQILDGEEVNDSIFVLIYELDDKNEVDDPAMWIKANPNIDVSVDREKLASTIQKARG 238
Query: 275 LDSD--VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
+ S + + Q E A G D++ ++
Sbjct: 239 IPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISS 298
Query: 333 VV-------------------------------VLRRGPVIEHLFDWSK--TDLRTTNNK 359
V V R+ + D +
Sbjct: 299 VCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYRQWAKAGWIRTTPGDCIDYDRIRDD 358
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL-----GQKRAVDLEFCRNRR 413
I EK+ + D N L+ G+ V A E NRR
Sbjct: 359 IMQDAEKFNIRLVGFDTWNA-THLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 416
>gi|82699481|ref|YP_414055.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
biovar Abortus 2308]
gi|189023809|ref|YP_001934577.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
gi|82615582|emb|CAJ10565.1| ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar
Abortus 2308]
gi|189019381|gb|ACD72103.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
Length = 380
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/414 (12%), Positives = 104/414 (25%), Gaps = 69/414 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V + P + + + + + S LS+
Sbjct: 2 GGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSRL 61
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
V + + + A
Sbjct: 62 -------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAAWC 102
Query: 198 DEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + P + L + R + T+ + +
Sbjct: 103 DELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMRTA 159
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ F + I RY + + R E+ G+ ++ + + IE+ P P
Sbjct: 160 ENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPPL 216
Query: 316 APLIMGCDI---AEEGGDNTVVVLR-----RGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
A +++ D + + D +V+ + + + L +
Sbjct: 217 ARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYHTH 276
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLE 425
DAI+ + N G V KR R E + + +
Sbjct: 277 EADAIVAEVNQGGEMVAAED-------PSVPVLKRRASRGKW--LRAEPVAALYEQGRVR 327
Query: 426 F-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ G + S +S D D L++ E
Sbjct: 328 HAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 365
>gi|304393573|ref|ZP_07375501.1| large terminase [Ahrensia sp. R2A130]
gi|303294580|gb|EFL88952.1| large terminase [Ahrensia sp. R2A130]
Length = 503
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/411 (12%), Positives = 102/411 (24%), Gaps = 58/411 (14%)
Query: 84 AGRGIGKTTLNA------WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A L + R S+ + + ++ +
Sbjct: 121 GGRGSGKTRTGAEWVKGMVLGQDWCTLRAVGSIALVGETYADIREVM------------- 167
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ S A S+ + + + G
Sbjct: 168 -----VDGESGLLAIHASNERPIFVSSRRRLEWQNGAVAQLFSSEDPDGLRGPQFEIAWC 222
Query: 198 DEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + + + L N R + T+ + +
Sbjct: 223 DELAKWKNAEATWDTLQLGLRLGNCPRQVVTTTP---KAVPLLKRIINDQATVISRMRTV 279
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ P+F + + YG S + R E+ G+ + D +++ R+ P
Sbjct: 280 ENEAHLAPNFLDRVTKLYGGTS-LGRQELDGELIEDREDGLWSRPMLQRCRVRKHPPLQ- 337
Query: 316 APLIMGCDI---AEEGGDNTV-VVLRRGP----VIEHLFDWSKTDLRTTNNKISGLVEKY 367
+I+ D D V + +G I L +
Sbjct: 338 -RIIVAVDPPVTGHAHSDACGLVAVGQGEDGQAYILEDRTIGAVSPARWAAAAVALYRRL 396
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA 427
D ++I+ N G L + + + R E + +
Sbjct: 397 GADRLVIETNQGGDMAESVLRAVDPDLAIKQVKATRGKW-----LRAEPVAHLYERGLVH 451
Query: 428 SLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ L + G +G S D D L++ E
Sbjct: 452 HVGPLPELEDEMC-----DFGLDGL-------SRG-SSPDRLDALVWGLTE 489
>gi|15830852|ref|NP_309625.1| terminase large subunit [Escherichia coli O157:H7 str. Sakai]
gi|168762543|ref|ZP_02787550.1| putative phage terminase, large subunit [Escherichia coli O157:H7
str. EC4501]
gi|217328566|ref|ZP_03444648.1| putative phage terminase, large subunit [Escherichia coli O157:H7
str. TW14588]
gi|13361062|dbj|BAB35021.1| putative terminase large subunit [Escherichia coli O157:H7 str.
Sakai]
gi|189367154|gb|EDU85570.1| putative phage terminase, large subunit [Escherichia coli O157:H7
str. EC4501]
gi|217318993|gb|EEC27419.1| putative phage terminase, large subunit [Escherichia coli O157:H7
str. TW14588]
Length = 553
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/450 (11%), Positives = 92/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + +
Sbjct: 41 DREVVERFIAFSRVCPHVKGPMRGRPIELEP--WQQFAFACILGFKVKATGRRKYTSAFI 98
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
+ R K+T A L W + G I A ++ + +
Sbjct: 99 EVP--RKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRR 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVIHPKSNSLLKPLAAKAATIEGTTPSLAIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKP 244
+ I S + + I+ S + ++
Sbjct: 217 PEGLLFAITTSGSNV--------VSACKQHYDYCCQILDGEEVNESMFVLIYELDDESEV 268
Query: 245 LDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSD--VTRVEVCGQFPQQDIDSFIPLNI 301
D + + +D I G+ S + + Q
Sbjct: 269 DDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGATPWMGNGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV--------------------------- 334
E A G D++ ++V
Sbjct: 329 AECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPAN 388
Query: 335 ----VLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V R+ + D + I EK+ + D N L+
Sbjct: 389 KNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFHIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRVL-----GQKRAVDLEFCRNRR 413
G+ V A E NRR
Sbjct: 448 GAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 477
>gi|315619058|gb|EFU99640.1| phage Terminase family protein [Escherichia coli 3431]
Length = 500
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/433 (10%), Positives = 87/433 (20%), Gaps = 76/433 (17%)
Query: 46 EGFSAPR--------SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
P WQ + + + + R K+T A L
Sbjct: 3 PHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVP--RKNAKSTTAAIL 60
Query: 98 VLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL--------SLLPNKHWFEMQSLSLH 149
W + G I A ++ + + + H +
Sbjct: 61 ANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRRRVNIQAHKVIHPKSNSL 120
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEASGTPD 205
P + S + + + +G + I S
Sbjct: 121 LKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNV-- 178
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGI 261
+ + I+ S + N+ D + + +
Sbjct: 179 ------VSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSV 232
Query: 262 DPSFHE-GIIARYGLDSD--VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
D I G+ S + + Q E A
Sbjct: 233 DREKLASTIQKARGIPSQWVEMMTKRFNIWCQGATPWMGNGAWAECAGTFTEEDLHGQEC 292
Query: 319 IMGCDIAEEGGDNTVVV-------------------------------LRRGPVIEHLFD 347
G D++ ++V R+ +
Sbjct: 293 YAGLDLSSTSDISSVCYAFPVGKTIMLVSRHYLPEFQLQNPANKNRAIYRQWAKAGWIRT 352
Query: 348 WSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL-----GQ 400
D + I EK+ + D N L+ G+ V
Sbjct: 353 TPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNA-THLRTQLQGAGFEVEPFPQTYLRFS 411
Query: 401 KRAVDLEFCRNRR 413
A E NRR
Sbjct: 412 PAAKSFEVFVNRR 424
>gi|290959240|ref|YP_003490422.1| phage terminase [Streptomyces scabiei 87.22]
gi|260648766|emb|CBG71879.1| putative phage terminase [Streptomyces scabiei 87.22]
Length = 504
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/379 (12%), Positives = 98/379 (25%), Gaps = 63/379 (16%)
Query: 39 GEKGTPLEGFSAP--RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
G++ L + WQ + V A + F+ A++ R GK +
Sbjct: 21 GQEAIDLARKAGLKLDPWQQHVLRVGMAEKADGSW----AAFEVAVNVPRQNGKGGIIEA 76
Query: 97 LVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD 156
LW + ++ A+ K + + + + P+ H Q W
Sbjct: 77 RELWGLFIGGEELILHSAHEFKTAKNA-FRRIERLIRGCPDLHKRVKQYRQTVGEEWIEL 135
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
L ++ + G M DE D +L +
Sbjct: 136 HDGAMLRFIARSK------------GSGRGFSGHSNML---DEDMILGDNEMDALLPTMA 180
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKP---------LDDWKRFQIDTRTVEGIDPSFHE 267
+ + W + S + D + + + +
Sbjct: 181 AIDDPQIWYLGSAGIGAPSVQLARLRRRALKAIEGGVPDPSLAYMEWSADLHVKECPKDC 240
Query: 268 GIIARYGLDSDV---------------------------TRVEVC--GQFPQQDID--SF 296
G D+ V E G++P + D
Sbjct: 241 TAHDDAGSDAAVLKSNPAVGYRLSLAKVANERATLSADGYARERLGVGEYPSDEEDAWQV 300
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
I ++ E + E PD + + V R G + ++
Sbjct: 301 IGRDVWEALADEESQPDDPVAFAVDVTPERSH-ASICVAGRCGGGVHVEVVDNRPGTGWV 359
Query: 357 NNKISGLVEKYRPDAIIID 375
++ L E++ P ++ID
Sbjct: 360 AERLRELAERHGPRCVVID 378
>gi|222147665|ref|YP_002548622.1| Phage terminase-like protein [Agrobacterium vitis S4]
gi|221734653|gb|ACM35616.1| Phage terminase-like protein [Agrobacterium vitis S4]
Length = 530
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/359 (13%), Positives = 97/359 (27%), Gaps = 61/359 (16%)
Query: 19 MWSDEIKLSFSNF----VLHFFPWGEKGTPLEGFS-APRSWQLEFMEVVDAHCLNSVNNP 73
++ D + V + + G + WQ + + +
Sbjct: 5 IFDDSPIDDPFGYGERAVKFLRLLKHPKSTMPGKAFQLDPWQERIVRRIYGPRHPNGRR- 63
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGISVICLANSETQLKTTLWAEVSK 130
V A+ RG KT+L A L L PG + A+ +Q + + E
Sbjct: 64 --IVRTVAMLLPRGNRKTSLGAALALLHTIGPENLPGGECMVAASDRSQAR-IAYQEAYN 120
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
+ P LH + + + G + S RT H
Sbjct: 121 IIGAEP------RMDGRLHLTDSKNRIRNPKTGAFFEAISADARTA-----------HGH 163
Query: 191 YGMAIINDEASGTPD-VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD--- 246
+ + DE P + I L + + ++++ R +E ++
Sbjct: 164 TPVFALVDELHAWPKRDLWEAIRSGLVKVAGSLLMVISTAGRGQENVAWEFYDYARKVQR 223
Query: 247 -------------------DWKRFQIDTRTVEGIDP--------SFHEGIIARYGLDSDV 279
DW+ + + G+ A + +
Sbjct: 224 GEIIDESWLPILFETPRDADWQDETVWYASNPGLAFGYPDIAGMRQLARESAEIPAEREA 283
Query: 280 TRVEVCGQFPQQDIDSFIPLNII-EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
+ + +D F+ + + E A + P +G D++ VV
Sbjct: 284 FKQLNLNIWLDHSLDPFVDMMVYDEGAYPVDLDDLEGKPCWLGVDLSSNNDLTAVVACW 342
>gi|223933566|ref|ZP_03625547.1| Terminase [Streptococcus suis 89/1591]
gi|223897762|gb|EEF64142.1| Terminase [Streptococcus suis 89/1591]
Length = 471
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/350 (13%), Positives = 92/350 (26%), Gaps = 53/350 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ +E + N + + R GKT L LW + G+ ++
Sbjct: 43 PWQVNLLENIMGIDNNGLWVHQKYGYAI----PRRNGKTEDVYILELWAL--HHGLRILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A + + FE L + DV S +
Sbjct: 97 TA-----------------HRISTSHSSFEALKKLLEDMGYVEDVDFVSNKAKGQERIEF 139
Query: 173 CRTYS--EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
T S + R T G +I DEA + +T+ + + + P
Sbjct: 140 KSTGSVIQYRTRTSNGGLGEGFDLLIIDEAQEYTVEQESALKYTVTDSDNPMTVMCGTPP 199
Query: 231 RR-LSGKFYEIFN-------KPLDDWKRFQ------IDTRTVEGIDPSFH------EGII 270
+G + F W + ++ + I
Sbjct: 200 TMVSTGTVFTNFRTKVLAGKSEYSGWSEWSVEDIKDVNDIDSWYLTNPSLGYHLTERKIK 259
Query: 271 ARYGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
A G D ++ G +P + S I ++ P + I
Sbjct: 260 AEIGDDELDHNIQRLGYWPSFNQKSAISENEWKRLKVDDVPELSGK----LFVGIKYGQD 315
Query: 330 DNTV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ V + R + +R I ++ + +++D
Sbjct: 316 GSNVSMSIAARTIDKKIFIEVIDCQSVRNGMQWIINFLQTADIEKVVVDG 365
>gi|260754354|ref|ZP_05866702.1| phage DNA Packaging protein [Brucella abortus bv. 6 str. 870]
gi|260674462|gb|EEX61283.1| phage DNA Packaging protein [Brucella abortus bv. 6 str. 870]
Length = 426
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 56/445 (12%), Positives = 112/445 (25%), Gaps = 72/445 (16%)
Query: 56 LEFMEVVDAHCLNSVNNPNPE---VFKGAISAGRGIGKTTLNAWLVLWLMSTRPG----- 107
+ + D + + + P I GRG GKT A V + P
Sbjct: 17 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 76
Query: 108 -ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ + + + + S LS+ V
Sbjct: 77 SGHIALVGETFNDAREVMVDGPSGILSVSRL-------------------VRPRYEASRR 117
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFW 224
+ + + A DE + P + L + R
Sbjct: 118 RLIWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 177
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ T+ + + + F + I RY + + R E+
Sbjct: 178 VTTTP---RAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYA-GTRLGRQEL 233
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLR---- 337
G+ ++ + + IE+ P P A +++ D + + D +V+
Sbjct: 234 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVVAGIDA 291
Query: 338 -RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ + + L + DAI+ + N G
Sbjct: 292 EGVGHVLADESMTMAKRHQWARRAIALYHTHEADAIVAEVNQGGEMVAAED-------PS 344
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMAD--WLEF-ASLINHSGLIQNLKSLKSFIVPNTGEL 453
V KR R E + + + +++ G
Sbjct: 345 VPVLKRRASRGKW--LRAEPVAALYEQGRVRHAGRFPA----LEDEMC----DFAPEG-- 392
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAE 478
+ S +S D D L++ E
Sbjct: 393 -LSS-----GRSPDRLDALVWALGE 411
>gi|30062674|ref|NP_836845.1| putative terminase of prophage CP-933C [Shigella flexneri 2a str.
2457T]
gi|56479836|ref|NP_707056.2| putative terminase of prophage CP-933C [Shigella flexneri 2a str.
301]
gi|30040922|gb|AAP16652.1| putative terminase of prophage CP-933C [Shigella flexneri 2a str.
2457T]
gi|56383387|gb|AAN42763.2| putative terminase of prophage CP-933C [Shigella flexneri 2a str.
301]
gi|313650396|gb|EFS14803.1| phage Terminase family protein [Shigella flexneri 2a str. 2457T]
gi|332758314|gb|EGJ88637.1| phage Terminase family protein [Shigella flexneri 4343-70]
gi|332759348|gb|EGJ89656.1| phage Terminase family protein [Shigella flexneri 2747-71]
gi|332761093|gb|EGJ91380.1| phage Terminase family protein [Shigella flexneri K-671]
gi|332767370|gb|EGJ97564.1| phage Terminase family protein [Shigella flexneri 2930-71]
gi|333005475|gb|EGK24993.1| phage Terminase family protein [Shigella flexneri K-218]
gi|333019452|gb|EGK38735.1| phage Terminase family protein [Shigella flexneri K-304]
Length = 492
Score = 59.2 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/419 (11%), Positives = 86/419 (20%), Gaps = 68/419 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + + + R K+T A L W + G I
Sbjct: 9 EPWQQFAFACILGFKVKATGRRKYTSAFIEVP--RKNAKSTTAAILANWFLIMENGQQDI 66
Query: 112 CLANSETQLKTTLWAEVSKWL--------SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
A ++ + + H + P +
Sbjct: 67 YTAAVSRDQARIVFDNARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGT 126
Query: 164 IDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
S + + + +G + I S + +
Sbjct: 127 NPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNV--------VSACKQHY 178
Query: 220 ANRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYG 274
I+ S + N+ D + + +D I G
Sbjct: 179 DYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARG 238
Query: 275 LDSD--VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
+ S + + Q E A G D++ ++
Sbjct: 239 IPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISS 298
Query: 333 VV-------------------------------VLRRGPVIEHLFDWSK--TDLRTTNNK 359
V V R+ + D +
Sbjct: 299 VCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYRQWAKAGWIRTTPGDCIDYDRIRDD 358
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL-----GQKRAVDLEFCRNRR 413
I EK+ + D N L+ G+ V A E NRR
Sbjct: 359 IMQDAEKFNIRLVGFDTWNA-THLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 416
>gi|119967835|ref|YP_950664.1| putative large terminase subunit [Staphylococcus phage PH15]
gi|112790059|gb|ABI21779.1| putative large terminase subunit [Staphylococcus phage PH15]
Length = 446
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/310 (11%), Positives = 92/310 (29%), Gaps = 26/310 (8%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
E GRG GK++ + ++ + R ++ + + ++ L T+++ ++ +
Sbjct: 24 REKLNIVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKADNTLATSVFEQIKWAIEE 82
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H F+++ + + + ER + + +
Sbjct: 83 QKVSHLFKVKVSPMEITYVP-----------RGNRIIFRGAQNPERLKSLKDSRFPFSIM 131
Query: 195 IINDEASGTPDVINLGI-----LGFLTERNANRFWIMTSNPRRLSGKFYEIFNK--PLDD 247
I + A + I G L + +F+ + P+R + + D+
Sbjct: 132 WIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQPDN 191
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN--IIEEA 305
I F + + + R E G+ +P N IE+
Sbjct: 192 TFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGEAIGSG---VVPFNNLQIEKI 248
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ + + + ++ V + G I + + + +
Sbjct: 249 PDELYKSFDNIRNAVDFGLTKTAPLHSDVYSKLGEHISGVRKKACATDPLAFVRWH--YD 306
Query: 366 KYRPDAIIID 375
K + +D
Sbjct: 307 KKKRIIYAVD 316
>gi|304360765|ref|YP_003856886.1| gp8 [Mycobacterium phage Angelica]
gi|302858349|gb|ADL71097.1| gp8 [Mycobacterium phage Angelica]
Length = 473
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/370 (12%), Positives = 98/370 (26%), Gaps = 19/370 (5%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + ++ A+S R GKT +V PG +VI
Sbjct: 43 DQWQ----DDLGKLVCAKRSDGLYAADMFAMSIPRQTGKTYFLGAIVFAFCKMNPGTTVI 98
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ T + + H + + + A +++ L +
Sbjct: 99 WTAHRTRTAAETFKSMQALAKREQIAPHILNVHTGNGKEAVLFTNGSRI-LFGAREKGFG 157
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSN 229
+ + M + + +P+ ++ G T+ +
Sbjct: 158 RGFAKVDVLIFDEAQILSENAMDDMIPATNASPNGLILFAGTPPKPTDPGEVFTNLRMDA 217
Query: 230 PRRLSGKF------YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
S + + P ++ +++ + DS R E
Sbjct: 218 LNGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAIRRMRKALSWDS--FRRE 275
Query: 284 VCGQFPQ-QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI 342
G + + I + + + P +G D++ G + +
Sbjct: 276 AMGIWDKISVHAQVIKAGLWRDLADPLGPEPGAKPASLGVDMSHGGAISIGGCWLIDDEL 335
Query: 343 EHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
H+ W+ TD I R ++ID + L+ V
Sbjct: 336 RHVEQVWAGTDTAAAVEFIVE--RAGRRIPVVIDDASPAKALVPELKRRKVKVRITYAGD 393
Query: 402 RAVDLEFCRN 411
A +N
Sbjct: 394 MAKACGLFKN 403
>gi|332098281|gb|EGJ03254.1| phage Terminase family protein [Shigella dysenteriae 155-74]
Length = 492
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/419 (10%), Positives = 86/419 (20%), Gaps = 68/419 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + + + R K+T A L W + G I
Sbjct: 9 EPWQQFAFACILGFKVKATGRRKYTSAFIEVP--RKNAKSTTAAILANWFLIMENGQQDI 66
Query: 112 CLANSETQLKTTLWAEVSKWL--------SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
A ++ + + + H + P +
Sbjct: 67 YTAAVSRDQARIVFDDARQMCLLSRPLRRRVNIQAHKVMHPKSNSLLKPLAAKAATIEGT 126
Query: 164 IDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
S + + + +G + I S + +
Sbjct: 127 NPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNV--------VSACKQHY 178
Query: 220 ANRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYG 274
I+ S + N+ D + + +D I G
Sbjct: 179 DYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARG 238
Query: 275 LDSD--VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
+ S + + Q E A G D++ ++
Sbjct: 239 IPSQWVEMMTKRFNIWCQGATPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISS 298
Query: 333 VVV-------------------------------LRRGPVIEHLFDWSK--TDLRTTNNK 359
V R+ + D +
Sbjct: 299 VCYAFPVGKTIMLVSRHYLPEFQLQNPANKNRAIYRQWAKAGWIRTTPGDCIDYDRIRDD 358
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL-----GQKRAVDLEFCRNRR 413
I EK+ + D N L+ G+ V A E NRR
Sbjct: 359 IMQDAEKFNIRLVGFDTWNA-THLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 416
>gi|227358314|ref|ZP_03842655.1| possible terminase large subunit [Proteus mirabilis ATCC 29906]
gi|227161650|gb|EEI46687.1| possible terminase large subunit [Proteus mirabilis ATCC 29906]
Length = 553
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/334 (9%), Positives = 77/334 (23%), Gaps = 31/334 (9%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
+E+ F F P WQ + ++ +
Sbjct: 41 DNEVVERFIGFSRVCPHVKGHLRGKPIELEP--WQQFAFANLLG--FKVISTGRRKYRSA 96
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
I R K+T+ A L W + G I A ++ + +
Sbjct: 97 YIQVPRKNAKSTVAAILANWFLVMENGQQDIYTAAVSRDQARIVFDDARQMCVLSKPLKK 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ +H + P + S + + + +G
Sbjct: 157 RVAIQQHKVINPKRNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNAVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ I S + + I+ + S +
Sbjct: 217 PEGILFAITTSGSNV--------ISACKQHYDYCCQILAGEEQNESLFALIYELDDEKEI 268
Query: 249 KRFQIDTRTVEGID-----PSFHEGIIARYGLDS--DVTRVEVCGQFPQQDIDSFIPLNI 301
++ + ++ + ++ I G+ S + + Q +
Sbjct: 269 DDERLWIKANPNLNVSVDGDALYDTIQKARGIPSQWTEMLTKRFNIWCQGETPWMGEGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+ ++ G D++ G +V
Sbjct: 329 LACEMDYTETDLKGLACYAGMDLSSTGDITSVCY 362
>gi|323937704|gb|EGB33972.1| terminase [Escherichia coli E1520]
Length = 433
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 63/437 (14%), Positives = 114/437 (26%), Gaps = 65/437 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P FK I AG G GKT + + + PGI+ A + Q++
Sbjct: 7 NVPQARFLSMPHKFKAYI-AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIF 65
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ V E + ++ + Y S E+P T
Sbjct: 66 YPTV-------------EEVAADWGLNVKINEGNKEVHFYYGRQYRGTTICRSMEKPQTI 112
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTER------NANRFWIMTSNPRRLSGKFY 238
VG + DE P + R +T+ P +
Sbjct: 113 VGFKIGNAL---VDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYE 169
Query: 239 EIFNKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + Q T E + + ++ Y ++ + + GQF
Sbjct: 170 QFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNL 227
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ + N E P P+ +G D V VLR G +
Sbjct: 228 TSGTVYH-QFDRKLNNCEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAY 286
Query: 352 DLRTTNNKISGL--------VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYR 396
D I K R I DA+ ++ L+ G++V
Sbjct: 287 DTPDMIRIIKERFWLYDGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV-- 344
Query: 397 VLGQKRAVDLEFCRNRRTELHVKM----ADWLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
V+ + N + + L + +
Sbjct: 345 VVNSSNPPVKDR-VNSMNAMFCNANGERRYKVNVKRCP----LYAESLEQQVWDEKG--- 396
Query: 453 LAIESKRVKGAKSTDYS 469
E + G + +
Sbjct: 397 ---EPDKKSGNDHPNDA 410
>gi|126015320|gb|ABN70691.1| terminase [Salmonella phage SETP7]
gi|126015322|gb|ABN70692.1| terminase [Salmonella phage SETP11]
Length = 423
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/359 (13%), Positives = 99/359 (27%), Gaps = 29/359 (8%)
Query: 81 AISAGRGIGKTTLNAW-LVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
A AG G GK+ + +L M + + ++ L + + LS ++
Sbjct: 23 AFVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGIRY 82
Query: 140 WFEMQSLSLH-PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ ++ + + D + +L ++ + DT H + +
Sbjct: 83 KYNKSDNIIYTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAWNKVIA 142
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
P + + P K ++ Q T +
Sbjct: 143 RNRQLPRTYRPI------TPKPANTVSVFTTPEGFRFVHDRWVVKKNPGYEMIQAPTTSN 196
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ + + + Y + + G+F S + +RE P L
Sbjct: 197 PFLPEDYVQSLRDTY--PGQLIDAYIDGEFVNLTSGSVYYAYDRRKNSSRET-IQPGETL 253
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII-DAN 377
+G D +TV V R D +I+ ++ ++ DA+
Sbjct: 254 YIGQDFNVGHMASTVYVQREYVWHAVAELVDMFDTPDVVREITERWKRNGHHIVMYPDAS 313
Query: 378 NTGARTCD-------YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
++ D L+ G+ + D N+ LE L
Sbjct: 314 GKNRKSTDASTSDIAQLQNAGFEIRAKSVNPAVKDRVASVNK----------ALESGRL 362
>gi|319942300|ref|ZP_08016615.1| hypothetical protein HMPREF9464_01834 [Sutterella wadsworthensis
3_1_45B]
gi|319804173|gb|EFW01073.1| hypothetical protein HMPREF9464_01834 [Sutterella wadsworthensis
3_1_45B]
Length = 566
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/310 (11%), Positives = 84/310 (27%), Gaps = 51/310 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
WQ+ + + + I RG GK++L++ + L+ + PG
Sbjct: 80 EPWQIFILTTSFGWRRRADGG--RRFRRVYIEVPRGNGKSSLSSGVGLYCLVADKEPGAE 137
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V A + Q K P + F ++ L+ ++ +
Sbjct: 138 VYSFATTRDQAKIVFGDAKQMAKQNEPLRQRFGLEVLA-----------------NALYV 180
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ T+ + + +A+I++ + + + L +R + W++T+
Sbjct: 181 PSTNSTFQAKSAEGSTLDGLNTHLAVIDELHAHKTRDVYDVVETSLGKRLNSLLWVITTA 240
Query: 230 PRRLSGKFYEIFN----------------------KPLDDWKRFQIDTRTVEGIDPSFHE 267
SG YE+ DDW + + S
Sbjct: 241 GFDTSGICYEVRMMVTRVLGKEISDETQFGVIYGLDDGDDWTTEEALMKANPNWGVSVMP 300
Query: 268 GI-----IARYGLDSDV--TRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAPLI 319
+ L S + + + + +
Sbjct: 301 EMVLSLQKKAIALPSAMNNFKTKHLNVWCSASTAWMDMQAWKRCEVPEMSITDFEGRKCF 360
Query: 320 MGCDIAEEGG 329
+G D+ +
Sbjct: 361 IGLDLGSKSD 370
>gi|260855405|ref|YP_003229296.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
gi|257754054|dbj|BAI25556.1| putative terminase large subunit [Escherichia coli O26:H11 str.
11368]
Length = 492
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/419 (10%), Positives = 86/419 (20%), Gaps = 68/419 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + + + R K+T A L W + G I
Sbjct: 9 EPWQQFAFACILGFKVKATGRRKYTSAFIEVP--RKNAKSTTAAILANWFLIMENGQQDI 66
Query: 112 CLANSETQLKTTLWAEVSKWL--------SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
A ++ + + + H + P +
Sbjct: 67 YTAAVSRDQARIVFDDARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGT 126
Query: 164 IDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
S + + + +G + I S + +
Sbjct: 127 NPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNV--------VSACKQHY 178
Query: 220 ANRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYG 274
I+ S + N+ D + + +D I G
Sbjct: 179 DYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARG 238
Query: 275 LDSD--VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
+ S + + Q E A G D++ ++
Sbjct: 239 IPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISS 298
Query: 333 VVV-------------------------------LRRGPVIEHLFDWSK--TDLRTTNNK 359
V R+ + D +
Sbjct: 299 VCYAFPVGKTIMLVSRHYLPEFQLQNPANKNRAIYRQWAKAGWIRTTPGDCIDYDRIRDD 358
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL-----GQKRAVDLEFCRNRR 413
I EK+ + D N L+ G+ V A E NRR
Sbjct: 359 IMQDAEKFNIRLVGFDTWNA-THLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 416
>gi|262047928|ref|ZP_06020873.1| terminase large subunit [Lactobacillus crispatus MV-3A-US]
gi|260571781|gb|EEX28357.1| terminase large subunit [Lactobacillus crispatus MV-3A-US]
Length = 631
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/315 (13%), Positives = 84/315 (26%), Gaps = 39/315 (12%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW----LVLWLMSTRPGIS 109
WQ + +++ + IS GRG GKT + VL
Sbjct: 101 WQKFILAMINGWKDQNGER---RFTDIHISVGRGQGKTQIAGVQMCKAVLIDTLNFTNKD 157
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ AN+ Q T L+ V K L + F+ + ++K +
Sbjct: 158 FLITANTSDQ-STKLFGYVKKMLEAVIKIEPFKSLAKEAGLD--LQTNQLIEKKTNNKVW 214
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG--------ILGFLTERNAN 221
+ + ++ G D S D I + +
Sbjct: 215 KISYEADKYDSTHNVLAIYDETGALDTYDRISDITDGQGQVKPYHQFIKISSAYPDPTSP 274
Query: 222 RFWI-MTSNPRRLSGKFYE-------IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY 273
+T E ++ + D + E R
Sbjct: 275 FHQEQITMQHIMEKDYSREGDNSLCLVWAQDDLDETFKPETWEKSNPLIGLSKEEQERRT 334
Query: 274 G-----LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
D + + + + +Q S++ L +E A++ + D + +G
Sbjct: 335 SNLIKQRDQAMLANTLHKFQNKNLNVWLKQSTASYLNLKDVENAIDDDFKVD-GREVYIG 393
Query: 322 CDIAEEGGDNTVVVL 336
D + + + +
Sbjct: 394 FDYSMFSDNTAIGFV 408
>gi|257462728|ref|ZP_05627136.1| hypothetical protein FuD12_02689 [Fusobacterium sp. D12]
gi|317060369|ref|ZP_07924854.1| predicted protein [Fusobacterium sp. D12]
gi|313686045|gb|EFS22880.1| predicted protein [Fusobacterium sp. D12]
Length = 458
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/333 (14%), Positives = 90/333 (27%), Gaps = 37/333 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q ++ D I R +GK L L +P V
Sbjct: 27 RPYQKRLIQSFDDGVKF-----------FLICWARRLGKDLLTLSLACRECINKPNTVVY 75
Query: 112 CLANSETQLK----TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + Q K E + + + + + L L +Y SK
Sbjct: 76 YIFPTMKQGKMMILDGYTNERKRLIDEVID---TKCLKLPLKSDKFYHSDNTLQFKNGSK 132
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
Y + + + + I+++ A D I ++ + + T
Sbjct: 133 IYFVGSQDANTKVGGNLD-------LLIVSEMALIQNDDIVTYLIPSVINVKGRIILVST 185
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF-----HEGIIARYGLDSD-VTR 281
R KF E+ K D+W++ I + E +D E + L SD R
Sbjct: 186 P---RFGSKFNEMLEKTGDEWEKSIIAANSEEAVDEDGNAVYTEEKLSEARTLMSDSKFR 242
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV 341
E + ++ ++ + D+T +
Sbjct: 243 QEYLCDTDVANEEAIYAYSLSRAEWVDSLEISGKK---LYVSEDLGINDSTALCFVINNT 299
Query: 342 IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ H + I + + I I
Sbjct: 300 VIHHYANVDKPTIHYIQYIKEFCVRNKITDIEI 332
>gi|330858400|ref|YP_004414753.1| Gp2 [Propionibacterium phage PAD20]
gi|260066518|gb|ACX30797.1| Gp2 [Propionibacterium phage PAD20]
Length = 503
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 48/405 (11%), Positives = 98/405 (24%), Gaps = 45/405 (11%)
Query: 32 VLHFFPWGEKGTPLEGFSA--PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ G L P WQ + + L N + R G
Sbjct: 16 AAYSVSAGGDAGELGRAYGLTPDPWQQQVL----DDWLAVGGNGRLASGVCGVFVPRQNG 71
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K + + L+ + + G ++ A+ + S + + + M
Sbjct: 72 KNAILEVVELFKATIQ-GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYRMVKSIRA 130
Query: 150 PAPWYSDVL-HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
+ VL H K E + ++ DEA D
Sbjct: 131 TNGQEAIVLHHPDCATFEKKCGCPGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQL 190
Query: 209 LGILGFLT---ERNANRFWIMTSNPRRLSG----KFYEIFNKPLDDWKRFQIDTRTVEGI 261
+L ++ + + ++ T G + + +
Sbjct: 191 EALLPTVSAAPSGDPQQIFLGTPPGPLADGSVVLRLRGQALSGGKRFAWTEFSIPDESDP 250
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI---------------------DSFIPLN 300
D + + + R G + S IP +
Sbjct: 251 DDVSRQWRKLAGDTNPALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQSATSVIPAD 310
Query: 301 -IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR---GPVIEHLFDWSKTDLRTT 356
+ A++ + G + G + R G +E + S T +
Sbjct: 311 KWAQSAVDEASLV---GGKVFGVSFSRSGDRVALAGAGRTDAGVHVEVIDGLSGT-IVDG 366
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCD-YLEMLGYHVYRVLGQ 400
+++ + D I +GA L G V+
Sbjct: 367 VGRLADWLAVRWGDTDRIMVAGSGAVLLQKALTDRGIPGRGVVVA 411
>gi|219053375|ref|YP_002455734.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
gi|226234324|ref|YP_002775459.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
gi|216752668|gb|ACJ73353.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
gi|226202138|gb|ACO37810.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
Bol26]
Length = 396
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/313 (10%), Positives = 89/313 (28%), Gaps = 22/313 (7%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ P + RG GKT A + L + G + + + + ++
Sbjct: 8 IYVNAYKEKPNAEIFIYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKNKTTQSIH 67
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ + LS + +F + + SL K + ++
Sbjct: 68 KEILELLSRYNLRKFFNISKAKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYA 118
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
+ + +EA+ ++ + E+ + P+ + N+
Sbjct: 119 -----HFKDLWLEEANQFSADDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLANEDN 173
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ R ++ E + + Y + R+EV G+ I
Sbjct: 174 PAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGEEFDFGTARLIK-EF 232
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI-EHLFDWSKTDLRTTNNKI 360
E + + G + +++ R + + + + + + N
Sbjct: 233 FECSPDIISRV--NGSYYTGIHVKGNRICFLEILVGRISYLPVVIVTNACSKVLLSKNDY 290
Query: 361 SGLVEKYRPDAII 373
+ ++ ++
Sbjct: 291 QAEINNFKGTFVL 303
>gi|301025610|ref|ZP_07189133.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
69-1]
gi|300395930|gb|EFJ79468.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
69-1]
Length = 435
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 63/437 (14%), Positives = 114/437 (26%), Gaps = 65/437 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P FK I AG G GKT + + + PGI+ A + Q++
Sbjct: 9 NVPQARFLSMPHKFKAYI-AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIF 67
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ V E + ++ + Y S E+P T
Sbjct: 68 YPTV-------------EEVAADWGLNVKINEGNKEVHFYYGRQYRGTTICRSMEKPQTI 114
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTER------NANRFWIMTSNPRRLSGKFY 238
VG + DE P + R +T+ P +
Sbjct: 115 VGFKIGNAL---VDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYE 171
Query: 239 EIFNKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + Q T E + + ++ Y ++ + + GQF
Sbjct: 172 QFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNL 229
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ + N E P P+ +G D V VLR G +
Sbjct: 230 TSGTVYH-QFDRKLNNCEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAY 288
Query: 352 DLRTTNNKISGL--------VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYR 396
D I K R I DA+ ++ L+ G++V
Sbjct: 289 DTPDMIRIIKERFWLYDGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV-- 346
Query: 397 VLGQKRAVDLEFCRNRRTELHVKM----ADWLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
V+ + N + + L + +
Sbjct: 347 VVNSSNPPVKDR-VNSMNAMFCNANGERRYKVNVKRCP----LYAESLEQQVWDEKG--- 398
Query: 453 LAIESKRVKGAKSTDYS 469
E + G + +
Sbjct: 399 ---EPDKKSGNDHPNDA 412
>gi|251778523|ref|ZP_04821443.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082838|gb|EES48728.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 448
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/319 (13%), Positives = 90/319 (28%), Gaps = 31/319 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
G G GK+ ++ P + + L+ +++ LS + H E
Sbjct: 48 GGAGSGKSHFVVQKMILKYLEYPNRKCLVIRKVGNSLRDSIFELFKTVLS---DWHLLER 104
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ S+ + + E+ + I+ +E +
Sbjct: 105 CEIRDSLL---------SITLPNGSTFIFKGLDDSEKIKSIANI-----DDIVVEECTEI 150
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDWKRFQIDTRTVEG 260
+ L +N + NP S YE++ + D + + +
Sbjct: 151 DKQEFSQLGLRLRSKNGYNQIHVMFNPISKSNWVYEMWFQNGYDESDTMVLKTTYKDNKF 210
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL-- 318
+ + +I D R+ G+F D I N E + P
Sbjct: 211 LPYDYINALIKMKETDPVYYRIYALGEFASL--DKLIYTNWEELDFD-WRKLMQQRPYAK 267
Query: 319 -IMGCDIAEEGGDNTVVVLRRGPV---IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D + + + V I ++ + L + + Y + I
Sbjct: 268 ACFGLDFGYVNDPSAFIAMIVDEVNKEIYIFDEFYEKGLLNDALALKIVKRGYGKEIIFA 327
Query: 375 DANNTGARTCDYLEMLGYH 393
D+ ++ D ++ G
Sbjct: 328 DSAE--RKSIDEIKRNGVP 344
>gi|332557899|ref|ZP_08412221.1| hypothetical protein RSWS8N_02570 [Rhodobacter sphaeroides WS8N]
gi|332275611|gb|EGJ20926.1| hypothetical protein RSWS8N_02570 [Rhodobacter sphaeroides WS8N]
Length = 432
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 61/470 (12%), Positives = 113/470 (24%), Gaps = 89/470 (18%)
Query: 32 VLHFFPWGEKGTPLEGFSAPR-SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGK 90
L PW + L P SW+ + GRG GK
Sbjct: 12 ALLALPWMFEFWALPHQLPPEGSWKSWV-----------------------VMGGRGAGK 48
Query: 91 TTLNAWLVLWLMS-TRPG-----ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
T A V + RPG V +A + Q + + S L+ P E +
Sbjct: 49 TRAGAEWVRAEVEGARPGDPGRSRHVALVAETIDQAREVMVFGESGILACSPPDRRPEWE 108
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ A DE +
Sbjct: 109 AGRKRL------------------VWPNGAVAQIFSAHDPESLRGPQFDAAWADELAKWG 150
Query: 205 DVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + R ++T+ PR + + + T
Sbjct: 151 RAEEAWDMLQFSLRLGDQPRQVVTTTPRNVPVLRHIL---DNPSTVVTHAPTEANRAYLA 207
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
+ + + R E+ G + + IE +R P P +++ D
Sbjct: 208 RSFLAEVHARYDGTRLGRQELEGLLLEDVEGALWTTARIE--ASRLEEPGPLDRIVVAVD 265
Query: 324 I---AEEGGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
E D +++ V+ S + ++ D
Sbjct: 266 PPVTGTEASDECGILVVGARTAGPPQDWRAVVLEDASVSAASPDRWARAALEALARHGAD 325
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
++ + N G + + V R E + + L
Sbjct: 326 RLVAEVNQGGDLVEAVIRQIDPLVPFRAVHASRGKAA-----RAEPVAALYEQGRVRHLR 380
Query: 431 NHSGLIQNL--KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
L + + +L+ + +G S D D L++ E
Sbjct: 381 GLGELEEQMCRMTLRGY---------------EGRGSPDRVDALVWAVTE 415
>gi|17546659|ref|NP_520061.1| terminase (ATPase subunit) related protein [Ralstonia solanacearum
GMI1000]
gi|17428958|emb|CAD15642.1| probable terminase (atpase subunit) related protein [Ralstonia
solanacearum GMI1000]
Length = 89
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 410 RNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKST 466
+ +T L +K D + L + + S+K G + ++ R +
Sbjct: 1 MDVKTALVLKAHDVISKGRLEFDAGWTDFAASFLSIKKTTTAAGGRVTYQAGRSEDTSHA 60
Query: 467 DYSDGLMYTFAENP 480
D + M+ + P
Sbjct: 61 DLAWACMHALSHEP 74
>gi|237720954|ref|ZP_04551435.1| phage terminase large subunit [Bacteroides sp. 2_2_4]
gi|229449789|gb|EEO55580.1| phage terminase large subunit [Bacteroides sp. 2_2_4]
Length = 450
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 36/255 (14%)
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQF-PQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
DP++ ++ + ++ G + + D I L +E AL R +
Sbjct: 201 DPTYLANLVNQSDEQRA---RDLDGNWKYKAAGDDIIKLTHME-ALYRNSMQIGDGIRRV 256
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIIIDANN 378
CD A EGGD+ V+ L G I +F K D + T + + ++E++ R + D N
Sbjct: 257 SCDAAFEGGDSLVMWLWEGWHIRDIFVC-KLDSKKTVDTVKAMLEEWHVREECFTYDLNG 315
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFC--RNRRTELHVKMADWLEFASLINHSGLI 436
G + + ++ + N +++ A + + L+
Sbjct: 316 LG----QIFKGFFPNAIPFNNKEAVEEKFKYIYANLKSQAAYLFAQKIINREISIEPTLL 371
Query: 437 QNLKSLKSFIVPNTGEL---------AIESKRVKG-------------AKSTDYSDGLMY 474
+ S K F ++ E KG S D+ + L+
Sbjct: 372 ERKFSGKGFEKVPLRQILDKERKAIRKDEDSEEKGWTIIKKIIMKKLVGHSPDFIEALLM 431
Query: 475 TFAENPPRSDMDFGR 489
Sbjct: 432 RMIFEIKHKRKHIKG 446
>gi|223940405|ref|ZP_03632258.1| protein of unknown function DUF264 [bacterium Ellin514]
gi|223890900|gb|EEF57408.1| protein of unknown function DUF264 [bacterium Ellin514]
Length = 447
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 64/425 (15%), Positives = 120/425 (28%), Gaps = 66/425 (15%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL--PNKHWFE 142
R IG T A+ + + + + +++ + L + W LL E
Sbjct: 28 SRQIGLTHAAAFSAVRRVIEKGARLDVWVSSRDEPLARLFLEDCKAWAQLLDVVAHDLGE 87
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS- 201
+ Y L I S P+ G +I DE +
Sbjct: 88 IIFDREKKFSAYVLEFATKLRIYSLS----------SNPNALAGKRGH----VILDEFAL 133
Query: 202 GTPDVINLGILGFLTERNANRFWIMT--SNPRRLSGKFYEIFNKPLD-DWKRFQIDTRTV 258
+ I +T I T +G ++I + W ++ +
Sbjct: 134 HGDQRMLYRIAKPVTTWGGQLEIISTHRGVGTVFNGIIHDIHQRGNPMGWSHHKVTLQEA 193
Query: 259 EGIDPSFHEGIIARYGL----------------DSDVTRVEVCGQFPQQDIDSFIPLNII 302
I+ E I + G D + E C P + FI ++I
Sbjct: 194 --IEQGVVERINEKTGEAESREGYLARVRAECLDEEQWLQEYCCV-PADESSVFIGYDLI 250
Query: 303 EEA-----LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR--GPVI--EHLFDWSKTDL 353
+ + E PL +G D+ + D +V+ + G V+ + +
Sbjct: 251 DACEDDCLKDFEYLRKCENPLYLGFDVGRKR-DLSVIDVGEKVGDVMWDRMRIELAGKTF 309
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCRNR 412
++ L+E + IDA G + + + G+ V V
Sbjct: 310 SEQEAELYRLLELPKLKRACIDATGLGMQLAERAKYRFGWKVEAVTFTGH---------V 360
Query: 413 RTELHVKMADWLEFASLIN--HSGLIQNLKSLKSFIVPNTG-ELAIESKRVKGAKSTDYS 469
+ EL + E + L +L+ +K + + ES D
Sbjct: 361 KEELAYNLRMAFEDRRVRITRDPLLRADLRGIKKEVTTSGNIRFIGESADS----HCDRF 416
Query: 470 DGLMY 474
Sbjct: 417 WAKAL 421
>gi|62327323|ref|YP_224036.1| hypothetical protein BPKS7gp16 [Salmonella phage SS3e]
gi|57472357|gb|AAW51219.1| hypothetical protein [Salmonella phage SS3e]
Length = 423
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/359 (13%), Positives = 98/359 (27%), Gaps = 29/359 (8%)
Query: 81 AISAGRGIGKTTLNAW-LVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
A AG G GK+ + +L M + + ++ L + + LS ++
Sbjct: 23 AFVAGFGTGKSEVMCNSALLDSMEGGSDSLIAMYEPTYDLVRLILAPRMEEKLSDWGIRY 82
Query: 140 WFEMQSLSLH-PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ ++ + + D + +L ++ + DT H + +
Sbjct: 83 KYNKSDNIIYTSSGQFGDFVLRTLDNPARIVGYESFRAKIDELDTLNKDHAEHAWNKVIA 142
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
P + + P K ++ Q T +
Sbjct: 143 RNRQLPRTYRPI------TPKPANTVSVFTTPEGFRFVHDRWAVKKKPGYEMIQASTTSN 196
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ + + + Y + + G+F S + +RE P L
Sbjct: 197 PFLPEDYVQSLRDTY--PGQLIDAYIDGEFVNLTSGSVYYAYDRRKNSSRET-IQPGETL 253
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII-DAN 377
+G D +TV V R D +I+ + ++ DA+
Sbjct: 254 YIGQDFNVGHMASTVYVQREYVWHAVAELVDMFDTPDVVREITERWGRQGHHIVMYPDAS 313
Query: 378 NTGARTCD-------YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
++ D L+ G+ + D N+ LE L
Sbjct: 314 GKNRKSTDASTSDIAQLQNAGFEIRAKSVNPAVKDRVASVNK----------ALESGRL 362
>gi|209918626|ref|YP_002292710.1| hypothetical protein ECSE_1435 [Escherichia coli SE11]
gi|209911885|dbj|BAG76959.1| conserved hypothetical protein [Escherichia coli SE11]
Length = 436
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 63/437 (14%), Positives = 114/437 (26%), Gaps = 65/437 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P FK I AG G GKT + + + PGI+ A + Q++
Sbjct: 10 NVPQARFLSMPHKFKAYI-AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIF 68
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ V E + ++ + Y S E+P T
Sbjct: 69 YPTV-------------EEVAADWGLNVKINEGNKEVHFYYGRQYRGTTICRSMEKPQTI 115
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTER------NANRFWIMTSNPRRLSGKFY 238
VG + DE P + R +T+ P +
Sbjct: 116 VGFKIGNAL---VDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYE 172
Query: 239 EIFNKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + Q T E + + ++ Y ++ + + GQF
Sbjct: 173 QFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNL 230
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ + N E P P+ +G D V VLR G +
Sbjct: 231 TSGTVYH-QFDRKLNNCEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAY 289
Query: 352 DLRTTNNKISGL--------VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYR 396
D I K R I DA+ ++ L+ G++V
Sbjct: 290 DTPDMIRIIKERFWLYDGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV-- 347
Query: 397 VLGQKRAVDLEFCRNRRTELHVKM----ADWLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
V+ + N + + L + +
Sbjct: 348 VVNSSNPPVKDR-VNSMNAMFCNANGERRYKVNVKRCP----LYAESLEQQVWDEKG--- 399
Query: 453 LAIESKRVKGAKSTDYS 469
E + G + +
Sbjct: 400 ---EPDKKSGNDHPNDA 413
>gi|62289552|ref|YP_221345.1| terminase large subunit [Brucella abortus bv. 1 str. 9-941]
gi|62195684|gb|AAX73984.1| hypothetical terminase large subunit [Brucella abortus bv. 1 str.
9-941]
Length = 380
Score = 58.8 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/414 (12%), Positives = 104/414 (25%), Gaps = 69/414 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V + P + + + + + S LS+
Sbjct: 2 GGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSRL 61
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
V + + + A
Sbjct: 62 -------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAAWC 102
Query: 198 DEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + P + L + R + T+ + +
Sbjct: 103 DELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMRTA 159
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ F + I RY + + R E+ G+ ++ + + IE+ P P
Sbjct: 160 ENAGNLAEGFMQTIARRYA-GTRLGRQELNGELVEERPGALWSRDRIEQCFEEN--PPPL 216
Query: 316 APLIMGCDI---AEEGGDNTVVVLR-----RGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
A +++ D + + D +V+ + + + L +
Sbjct: 217 ARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYHTH 276
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLE 425
DAI+ + N G V KR R E + + +
Sbjct: 277 EADAIVAEVNQGGEMVAAED-------PSVPVLKRRASRGKW--LRAEPVAALYEQGRVR 327
Query: 426 F-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ G + S +S D D L++ E
Sbjct: 328 HAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 365
>gi|325661335|ref|ZP_08149961.1| hypothetical protein HMPREF0490_00694 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472284|gb|EGC75496.1| hypothetical protein HMPREF0490_00694 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 447
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/370 (13%), Positives = 98/370 (26%), Gaps = 84/370 (22%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
I A R K+ + A +PG ++ + + Q K + ++ L
Sbjct: 72 VCIVACRAASKSFIIALYACCKAIIKPGSKIVLGSATRGQSKLIISEKIKNEL------- 124
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+++ PA +S Y T + F + +E
Sbjct: 125 ------MNMSPALRREIKDIKDSANESIVYFRNGSTIKVFTANEFA--RGLRSTDAVREE 176
Query: 200 ASGTPDVINL-GILGFLTERNANRF-----------------------WIMTSNPR-RLS 234
I+ I F T R A W+ + L
Sbjct: 177 FRQIDKNIDDSVISPFQTIRQAPFMIDPFYEGIECLKEDPKDIYISSSWLDDGHWMWNLV 236
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ Y ++ T++ + + + D ++E + +
Sbjct: 237 DQAYTDMLNDRPSVMLAFDESITLKHNIRTQRQMQQEKKKQDPITWQIEFLNLRVRNNAS 296
Query: 295 SFIPLNIIEEALNREPCPDP--------------------YAPLIMGCDIA--------- 325
+F +++ +A P ++ CDIA
Sbjct: 297 AFFTYSMLSDAQTLHQVFYPRNHRDVKFNKKTKHFASKQEGEIRVISCDIAFVEGKKNDN 356
Query: 326 -------------EEGGDNTVVVLRRGPV--IEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
D++ V +++G ++ D +I L E Y D
Sbjct: 357 SIYSCIRGIPETLRYETDDSEVEVKQGYKRQYSYIESNQIGDTTKQAIRIRQLYEDYDAD 416
Query: 371 AIIIDANNTG 380
I++D N G
Sbjct: 417 YIVLDCRNGG 426
>gi|85702762|ref|ZP_01033866.1| Putative large terminase [Roseovarius sp. 217]
gi|85671690|gb|EAQ26547.1| Putative large terminase [Roseovarius sp. 217]
Length = 419
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/434 (11%), Positives = 104/434 (23%), Gaps = 67/434 (15%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSET 118
L P + I GRG GKT A V + + + +
Sbjct: 10 WALEHQLPPEGDWRTWVIMGGRGAGKTRAGAEWVRAQVEGSRPLDEGRCKRIALVGETID 69
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
Q++ + S ++ P + Q+
Sbjct: 70 QVREVMVFGESGIMACSPPDRRPDWQATRKRL------------------IWPNGAVAQA 111
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGK 236
DE + + L +A R + T+ R G
Sbjct: 112 YSAHDPEALRGPQFDGAWVDELAKWKRARETWDMLQFGLRLGDAPRVCVTTTP--RNVGV 169
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+I P T + + + R E+ G + D+
Sbjct: 170 LKDIVAVPS--TVVTSAPTEANRAYLAESFLDEVRARYAGTRLGRQELDGLLIDEAEDAL 227
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVL----------RRGPVIE 343
++E A R + +++ D G D +++ +
Sbjct: 228 WTPAMLEAA--RVESLPEFDRVVVAVDPPVTGHAGSDECGIIMAGAITRGPVQDWRVWVL 285
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
S E + + ++ + N G + + V
Sbjct: 286 ADASVSAASPARWARAAIRARELWGAERVVAEVNQGGDLVEQVIRQVDPLVPLRKVHASR 345
Query: 404 VDLEFCRNRRTELHVKMADWLEFASLINHSGL--IQNLKSLKSFIVPNTGELAIESKRVK 461
L R E + + + + GL +++ + G +
Sbjct: 346 GKLA-----RAEPVAALYE---QGRVYHARGLGALEDQMCA----MTARGY--------E 385
Query: 462 GAKSTDYSDGLMYT 475
G S D D L++
Sbjct: 386 GRGSPDRVDALVWA 399
>gi|159044721|ref|YP_001533515.1| hypothetical protein Dshi_2178 [Dinoroseobacter shibae DFL 12]
gi|157912481|gb|ABV93914.1| hypothetical protein Dshi_2178 [Dinoroseobacter shibae DFL 12]
Length = 452
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 63/418 (15%), Positives = 107/418 (25%), Gaps = 63/418 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + V + + Q++ + S L+
Sbjct: 60 ILGGRGAGKTRAGAEWVRAEVEGARPLDAGRSRRVALVGETYDQVRDVMIFGESGILACS 119
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P E Q + A
Sbjct: 120 PADRKPEWQGTRRQL------------------VWPNGAIAKCHSANDPEALRGPQFDAA 161
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + P + + L R + T+ + K
Sbjct: 162 WVDELAKWPNAEETWDMLQFALRLGVNPRQVVTTTP---RPSTILKQILATGSTVKTTAP 218
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ SF E I ARY + + R E+ G + IE NR
Sbjct: 219 TEANRAYLAASFLEEIRARYA-GTRLGRQELDGVLLDDVEGALWTSAGIE--ANRVETVP 275
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVL--------RRGP--VIEHLFDWSKTDLRTTNNKI 360
P +++ D +G D +V+ RRG + S +
Sbjct: 276 PLDRIVVAVDPPVTGHKGSDACGIVVAGLVAQGERRGWTAYVLEDATVSASTPLQWAEAA 335
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKM 420
++ + ++ + N G L L + RAV + R E +
Sbjct: 336 VEAARRHEAERVVAEVNQGGDLVETVLRQLDDVLPY-----RAVRATRGKVVRAEPVAAL 390
Query: 421 ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ + L + + + +G S D D L++ E
Sbjct: 391 YEQRRVKHVRGLGALEDQMCQMTNHGFKGSG-------------SPDRVDALVWALTE 435
>gi|261368738|ref|ZP_05981621.1| phage terminase, large subunit, PBSX family [Subdoligranulum
variabile DSM 15176]
gi|282569160|gb|EFB74695.1| phage terminase, large subunit, PBSX family [Subdoligranulum
variabile DSM 15176]
Length = 417
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/273 (11%), Positives = 65/273 (23%), Gaps = 24/273 (8%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+ H + + V K GR K++ + V+ + P + L+
Sbjct: 20 YETHRQINQGLIDEAVEK----GGRASLKSSYVSVEVILQLIHHPDCHALVCRQVADTLR 75
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
+++A++ + L F L + G+D +
Sbjct: 76 DSVYAQILWAIDKLGLTAKFRCTQSPLQCTYLPTGQRILFRGLDDTQKIKSIK------- 128
Query: 182 DTFVGHHNTYGMAIINDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
Y + +EA D + L +I + P
Sbjct: 129 -----LPFGYIGVLWFEEADQIKGGEDAVRNVQQSALRGGEFGLTFISFNPPSAARNWAN 183
Query: 239 EIFNKPLDDWKRFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + + P F R E G+ F
Sbjct: 184 KYALVQRPGKRVHHSSYLEAPPEWLGPKFLAQAEYIKETKPTKYRHEYLGEAVGNGTQVF 243
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + E + R + + G D
Sbjct: 244 DNIRLEELSAKR---IRSFGDALNGVDWGWYPD 273
>gi|218700350|ref|YP_002407979.1| putative phage terminase large subunit [Escherichia coli IAI39]
gi|218370336|emb|CAR18139.1| putative phage terminase large subunit [Escherichia coli IAI39]
Length = 553
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 50/450 (11%), Positives = 91/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + +
Sbjct: 41 DREVVERFIAFSRVCPHVKGPMRGRPIELEP--WQQFAFACILGFKVKATGRRKYTSAFI 98
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
+ R K+T A L W + G I A ++ + +
Sbjct: 99 EVP--RKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRR 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKP 244
+ I S + + I+ S + N+
Sbjct: 217 PEGLLFAITTSGSNV--------VSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEV 268
Query: 245 LDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSD--VTRVEVCGQFPQQDIDSFIPLNI 301
D + + +D I G+ S + + Q
Sbjct: 269 DDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV--------------------------- 334
E G D++ ++V
Sbjct: 329 AECTGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKNIMLVSRHYLPEFQLQNPAN 388
Query: 335 ----VLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
V R+ + D + I EK+ + D N L+
Sbjct: 389 KNRAVYRQWAKAGWICTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRVL-----GQKRAVDLEFCRNRR 413
G+ V A E NRR
Sbjct: 448 GAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 477
>gi|212712878|ref|ZP_03321006.1| hypothetical protein PROVALCAL_03975 [Providencia alcalifaciens DSM
30120]
gi|212684570|gb|EEB44098.1| hypothetical protein PROVALCAL_03975 [Providencia alcalifaciens DSM
30120]
Length = 436
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 62/433 (14%), Positives = 113/433 (26%), Gaps = 60/433 (13%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P FK + AG G GKT + + M P I+ A + Q++
Sbjct: 8 NIPQARFLAMPHKFKAYV-AGFGSGKTWVGCGGICKGMWEFPKINQGYFAPTYPQIRDIF 66
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + E +L + + + Y S E+P+T
Sbjct: 67 YPTI-------------EEVALDWGLKVNIVESNKEVHFYEGRRYRGTVICRSMEKPETI 113
Query: 185 VGHHNTYGM---AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
VG + + + +T+ P + +
Sbjct: 114 VGFKIGNALIDELDVMKSDKAQKAWRKIIARMRYNVAGLRNGIDVTTTPEGFKFVYQQFV 173
Query: 242 NKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
D + Q T E + + +++ Y ++ + + GQF
Sbjct: 174 KAVRDKPELSTLYGIVQASTFDNEKNLPADYIPSLMSSY--PPELIKAYLKGQFTNLTSG 231
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR 354
+ I + N E P L +G D V VLR G + D
Sbjct: 232 T-IYHTFDRKLNNSEEEEQPGETLYIGMDFNVGKMAGIVHVLRLGLPHAVTEIINAYDTP 290
Query: 355 TTNNKISGL--------VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYRVLG 399
I +K R I DA+ ++ L G+HV
Sbjct: 291 DMVRIIKERFWLYDGSDYKKVREIYIYPDASGDSRKSNNASSTDIAQLRQAGFHVIVNDS 350
Query: 400 QKRAVDL-----EFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELA 454
D N + E K+ + + + +
Sbjct: 351 NPPVKDRINSMNAMFCNAKGERRYKV----NVKRCP----VYTESLEQQVWDPTSG---- 398
Query: 455 IESKRVKGAKSTD 467
E + G +
Sbjct: 399 -EPDKKSGNDHPN 410
>gi|80159854|ref|YP_398598.1| conserved phage-related protein [Clostridium phage c-st]
gi|78675444|dbj|BAE47866.1| conserved phage-related protein [Clostridium phage c-st]
Length = 580
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 62/511 (12%), Positives = 126/511 (24%), Gaps = 115/511 (22%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q + + + + RG+GK+ L+A + G+ +
Sbjct: 70 QRLILRAMARNQY------------VMLICCRGLGKSWLSAVFFVASCILYKGLKCGIAS 117
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
Q + + +V L+ P+ + P + C + +
Sbjct: 118 GQGQQARNVIIQKVKGELAKNPSIAREIV-------FPIKTGADDCVVNFRNGSEIRAIV 170
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ G + ++ DE D + IL +T+ +
Sbjct: 171 LGRNQG----DGARSWRFHYLLVDECRLVSDKVINTILIPMTKTKRAVAIHHNKREKGKV 226
Query: 235 GKFYEIFNKPLDDWKRFQIDTR--------------------TVEGIDPSFHEGIIARYG 274
+ K D +KRF+ D + +
Sbjct: 227 IFISSAYLKTSDLYKRFKYFCDKMSSGANNYFVCSLDYRVGIEAGIFDQDDIDEERNKPD 286
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-----NREPCPDPYAPLIMGCDIA---E 326
+ + + E G F +S+ P A + I+ D+A
Sbjct: 287 MTIEEFQYEYEGIFVGSSGESYFPYETTTPARVLGRGEITQPKKSKSEYIITHDVAISGA 346
Query: 327 EGGDNTVVVLR------RGPVIEHL---FDWSKTDLRTTNNKISGLVEKYRPDA--IIID 375
DN + G ++ + + L + + L P+A I+ID
Sbjct: 347 SDSDNACTHVIKLKPKPNGTYVKEVVYTKTHNGISLPEQRDFLRELYHLKFPNAVKIVID 406
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRA---------VDLEFCRN-----RR-------- 413
G + ++ D N R
Sbjct: 407 MRGNGEPLPSLFYET-WEYTNSKTGEKIEFPPLVLDNDDKGKSLNNALPILRGITATVGS 465
Query: 414 -TELHVKMADWLEFA--SLINH------------------------SGLIQNLKSLKSFI 446
+++ M E L+ LI+ L ++K
Sbjct: 466 NNKMYTYMKASFENGSLRLLKDSVEVDDLFKNKEMPIEEFQFFKQTDRLIRELSNIKQVE 525
Query: 447 VPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
+ + E + D + LMY +
Sbjct: 526 TDHNN-IKYERIDKGTKR--DRATSLMYGLS 553
>gi|70727357|ref|YP_254273.1| putative phage terminase large subunit [Staphylococcus haemolyticus
JCSC1435]
gi|68448083|dbj|BAE05667.1| putative phage terminase large subunit [Staphylococcus haemolyticus
JCSC1435]
Length = 421
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/271 (10%), Positives = 80/271 (29%), Gaps = 23/271 (8%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P++ GRG GK++ + ++ + R ++ + + ++ L T+++ ++ +
Sbjct: 25 PDILNVVAKGGRGSGKSSDISIIIT-QLIMRYPMNAVVVRKTDNTLATSVFEQIKWAIEE 83
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H F+++ + + ++ + + ER + + +
Sbjct: 84 QKVSHLFKIKVSPM---------EITFIPRGNRIIFRGAQ--NPERLKSLKDSRFPFSIM 132
Query: 195 IINDEASGTPDVINLGILGFL----TERNANRFWIMTSNPRRLSGKFYEIFNKPL---DD 247
I + + I + + + + NP + + + D+
Sbjct: 133 WIEELGEFKTEDEVTTITNSMLRGELDEGLFYKFYFSYNPAKRKQHWANKKYETSFQPDN 192
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
I F + + + R E G+ +P N +
Sbjct: 193 TFVHHSTYLNNPFISKQFIQEAESAKQRNELRYRWEYLGEAIGSG---VVPFNNLRIEKI 249
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
+ + + + D D V
Sbjct: 250 PDDLYNSFDNIRNAVDFG-YATDPLAFVRWH 279
>gi|322412171|gb|EFY03079.1| phage terminase [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
Length = 471
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/348 (12%), Positives = 94/348 (27%), Gaps = 49/348 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + + A + + + R GKT + + LW + G+ ++
Sbjct: 43 PWQENMLIPIMAIDEDGLWVHQKYGYAI----PRRNGKTEVVYIVELWAL--HKGLKILH 96
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + + +V K+L + D + +
Sbjct: 97 TAHRISTSH-ASFEKVKKYLEMSGYVDG--------------EDFISNKAKGQERIEFKA 141
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ R T G +I DEA + +T+ + + + P
Sbjct: 142 SGAVIQFRTRTSNGGLGEGFDLLIIDEAQEYTSEQESALKYTVTDSDNPMTIMCGTPPTI 201
Query: 233 LSG-----KFYEIFNKPLDDWKRF---------QIDTRTVEGIDPSFH------EGIIAR 272
+S + + K + + +I+ + I I A
Sbjct: 202 VSTGTVFEAYRKDCLKGNKRYSGWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEAE 261
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G + + S I + + + P + I N
Sbjct: 262 LGEDEIDHNIQRLGYWSSFNQKSVISEKEWAKLKVEQVPELKSK----LFVGIKFGQDGN 317
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + R + +R I ++ ++ID
Sbjct: 318 NVSLSIAARTSENKVFVEVIDCLSVRNGTQWIINFLKSADIAKVVIDG 365
>gi|304440418|ref|ZP_07400307.1| PBSX family phage terminase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371170|gb|EFM24787.1| PBSX family phage terminase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 388
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/389 (13%), Positives = 109/389 (28%), Gaps = 40/389 (10%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GR GK++ A ++ + P I+V+C+ L+ + + ++ + + L +F+
Sbjct: 4 RGGRASGKSSFIAQEIILDIIKYP-ITVLCVRKVGNTLQESCYEQIKEAIDQLNLGEYFK 62
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ L G D + S + + +A E
Sbjct: 63 LNISPLKITYTPRGNSIIFRGADDP-----AKIKSIKMAKYPIARLWIEELAEFKTE-DE 116
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP--LDDWKRFQIDTRTVEG 260
+ N + G L + +F+ + P+R + + ++
Sbjct: 117 VSMIENSILRGELEDGLEYKFYYTYNPPKRKQSWVNKRYETTFLAENTFVHHSTYLDNPY 176
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
I +F R E G+ +P + + + +
Sbjct: 177 ISQAFKNEAEHIKNTKPLKYRWEYLGEPIGSG---VVPFDNLVFREISTKELLNFDNIRQ 233
Query: 321 GCDIAEEGGDNTVVVL-----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
G D + L RR I K R KI + II D
Sbjct: 234 GIDWGYANDPFAFIRLHYDKTRRRIYIFDELYRVKLSNREAAAKIK--ANGWNDCKIIAD 291
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG- 434
+ ++ D + G +Y + +V+ WL+ I
Sbjct: 292 SAEP--KSIDEMWEYGLKIYGANKRPGSVEYGE-------------KWLDDVEEIIIDPK 336
Query: 435 ----LIQNLKSLKS-FIVPNTGELAIESK 458
+ +++ + +E K
Sbjct: 337 RCPNTAKEFENIDYAVDKDGNPKNKLEDK 365
>gi|319404714|emb|CBI78316.1| phage-related protein [Bartonella rochalimae ATCC BAA-1498]
Length = 442
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/350 (12%), Positives = 87/350 (24%), Gaps = 36/350 (10%)
Query: 84 AGRGIGKTT----LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT + A + ++C + L + E+ + + P
Sbjct: 27 GGRGSGKTRSFALMTAVIGYHHGKAGERGIILCARQFQNSLAESSLEEIKRAIEAYP--- 83
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ +Y D +G + DE
Sbjct: 84 ---------FLSDYYEIGDKYIRSKDGCIVYAFAGLDRNIASVKSMG----RILLCWVDE 130
Query: 200 ASGTPDVINLGILGFLTERNANRF---WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
A D ++ L E W+ + R + + K +I+ R
Sbjct: 131 AEPVTDAAWQILIPTLREEGKEWHSELWVTWNPCRENAAVEKRFRFTKDPNIKGVEINWR 190
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ A + + G++ Q ++ ++E P
Sbjct: 191 DNPKFPAKLNRDRQADLEQRPEQYQHIWEGEYLQAMQGAYYQKLLLEAEQEGRITTVPRD 250
Query: 317 PLI-----MGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
PLI D T + + + G I L + + + + Y
Sbjct: 251 PLIQVKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIGWVCQKGYEK 310
Query: 370 DAIIIDANNTGARTC------DYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+++ + L+ G+ + Q R
Sbjct: 311 ALMVLPHDGATKDRVYNVSFESALQQAGFRTQIIPNQGVGAVKMRIEAVR 360
>gi|321157116|emb|CBW39102.1| Phage terminase [Streptococcus phage 23782]
Length = 470
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/347 (13%), Positives = 95/347 (27%), Gaps = 49/347 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ+ + + A N + + R GK+ L LW + G++++
Sbjct: 43 WQVNLLTSIMAVDKNGLWVHQKFGYSI----PRRNGKSELLYLFELWGL--HNGLNILHT 96
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A+ + ++ + +V +L + + L
Sbjct: 97 AHRISTSHSS-FEKVKCYLEKM------GYVDGEDFSSIRAKGQERIELFDGGGIVQFRT 149
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE-RNANRFWIMTSNPRR 232
RT + + F ++ DEA + +T+ N T
Sbjct: 150 RTSNGGLGEGFD--------LLVIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPV 201
Query: 233 LSGKFYEIFNKP-------LDDWKRFQID----------TRTVEGIDPSFHEG--IIARY 273
+G + + K W + + I A
Sbjct: 202 SNGTVFTNYRKNCLFGKGKYSGWAEWSVSEEKEIDDVDAWYNSNPSMGYHLNERKIEAEL 261
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D V+ G +P+ + S I E ++ P + +
Sbjct: 262 GDDKLDHNVQRLGYWPEYNQKSAISETEWNELCVDSMPDLSGK----LFVGVKYGQDGAN 317
Query: 333 V---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + +R + +R N+ I V++ I++D
Sbjct: 318 VALSIAVRTVDERIFVETIDCQSVRNGNDWILDFVKRADVATIVVDG 364
>gi|307710012|ref|ZP_07646457.1| phage Terminase family protein [Streptococcus mitis SK564]
gi|307619197|gb|EFN98328.1| phage Terminase family protein [Streptococcus mitis SK564]
Length = 470
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/347 (12%), Positives = 92/347 (26%), Gaps = 49/347 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ + + A N + + R GK+ + L +W + G++++
Sbjct: 43 WQKNLLLPMMAVDKNGLWVHQKFGYSI----PRRNGKSEILYILEIWGL--HKGLNILHT 96
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A+ + ++ + +V ++L + + L
Sbjct: 97 AHRISTSHSS-FEKVKRYLEKM------GYVDGEDFNSIRAKGQERIELYSTGGVIQFRT 149
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE-RNANRFWIMTSNPRR 232
RT + + F +I DEA + +T+ N T
Sbjct: 150 RTSNGGLGEGFD--------MLIIDEAQEYTTEQESALKYTVTDSENPITIMCGTPPTPV 201
Query: 233 LSGKFYEIFNK-------PLDDWKRFQID----------TRTVEGIDPSFHEG--IIARY 273
SG + + + W + + I A
Sbjct: 202 SSGTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAEL 261
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D ++ G +P + S I E ++ P + I
Sbjct: 262 GEDKLDHNIQRLGFWPTYNQKSAISETEWNELKVDDIPELSGK----LSVGIKYGQDGTN 317
Query: 333 V---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + R + +R N + + + I+ID
Sbjct: 318 VALSIAARTKDGRFFVETVDCQSVRNGNEWMVAFLRQSDVAQIVIDG 364
>gi|223939800|ref|ZP_03631671.1| protein of unknown function DUF264 [bacterium Ellin514]
gi|223891576|gb|EEF58066.1| protein of unknown function DUF264 [bacterium Ellin514]
Length = 449
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 65/425 (15%), Positives = 121/425 (28%), Gaps = 66/425 (15%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL--PNKHWFE 142
R IG T A+ + + + I +++ + L + W LL E
Sbjct: 28 SRQIGLTHAAAFSAVRRVIEKGARLDIWVSSRDEPLARLFLEDCKAWAQLLDVVAHDLGE 87
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS- 201
+ Y L I S P+ G +I DE +
Sbjct: 88 IIFDREKKFSAYVLEFATKLRIYSLS----------SNPNALAGKRGH----VILDEFAL 133
Query: 202 GTPDVINLGILGFLTERNANRFWIMT--SNPRRLSGKFYEIFNKPLD-DWKRFQIDTRTV 258
+ I +T I T +G ++I ++ W ++ +
Sbjct: 134 HGDQRMLYRIAKPVTTWGGQLEIISTHRGVGTVFNGIIHDIHHRGNPMGWSHHKVTLQEA 193
Query: 259 EGIDPSFHEGIIARYGL----------------DSDVTRVEVCGQFPQQDIDSFIPLNII 302
I+ E I + G D + E C P + FI ++I
Sbjct: 194 --IEQGVVERINGKTGEAESREGYLARVRAECLDEEQWLQEYCCV-PADESSVFIGYDLI 250
Query: 303 EEA-----LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR--GPVI--EHLFDWSKTDL 353
+ + E PL +G D+ + D +V+ + G V+ + +
Sbjct: 251 DACEDDCLKDFEYLRKCENPLYLGFDVGRKR-DLSVIDVGEKVGDVMWDRMRIELAGKTF 309
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAVDLEFCRNR 412
++ L+E + IDA G + + + G+ V V
Sbjct: 310 SEQEAELYRLLELPKLKRACIDATGLGMQLAERAKYRFGWKVEAVTFTGH---------V 360
Query: 413 RTELHVKMADWLEFASLIN--HSGLIQNLKSLKSFIVPNTG-ELAIESKRVKGAKSTDYS 469
+ EL + E + L +L+ +K + + ES D
Sbjct: 361 KEELAYNLRMAFEDRRVRITRDPLLRADLRGIKKEVTTSGNIRFIGESADS----HCDRF 416
Query: 470 DGLMY 474
Sbjct: 417 WAKAL 421
>gi|110634235|ref|YP_674443.1| phage terminase [Mesorhizobium sp. BNC1]
gi|110285219|gb|ABG63278.1| phage Terminase [Chelativorans sp. BNC1]
Length = 561
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 55/328 (16%), Positives = 93/328 (28%), Gaps = 44/328 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGI 108
WQ E + V+ C N V I GRG KT+L A L L PG
Sbjct: 60 DPWQEEIVRVIYGPCDEHGNR---IVSDVVILIGRGNRKTSLGAALSLLHTHGPEAVPGG 116
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
I A + Q + + E L W + Q+ + I +
Sbjct: 117 EAIFAAGDKKQAR-IAYQEALGILHAGDADLWKKGQANRATDPTKTIRIQDYRNTIQFPN 175
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRFWIMT 227
S + ++ H + DE + I LT+ + +T
Sbjct: 176 GSFLEAISNDHGTQ-----HGRTPAFALCDELHAWARRDLWDVIDTGLTKTANSLRVTIT 230
Query: 228 SNPRRLSGKFYEIFNKPLD----------------------DWKRFQIDTRTVEGIDPSF 265
+ R +E+ + DW+ + GI +
Sbjct: 231 TAGRGQDTIGHEVIERARKIARGKIIEPSTLAFLFEVPAEADWRDESLWPLANPGIPHGY 290
Query: 266 HE----GIIARYGLDS----DVTRVEVCGQFPQQDIDSFIPLNIIEEALN-REPCPDPYA 316
AR DS D ++ + + F+ ++I +
Sbjct: 291 PPLDKLRQKARVAEDSPGARDAFKMLHLNMWLDRSTSPFVEMSIYDRGNKPINVEALAGL 350
Query: 317 PLIMGCDIAEEGGDNTVVVLRRGPVIEH 344
P +G D+ + VV R P ++
Sbjct: 351 PCWIGVDLGMTDDLSAVVAAFRDPDLDE 378
>gi|159044464|ref|YP_001533258.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12]
gi|157912224|gb|ABV93657.1| hypothetical protein Dshi_1915 [Dinoroseobacter shibae DFL 12]
Length = 260
Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/269 (16%), Positives = 82/269 (30%), Gaps = 53/269 (19%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ+E + A+ GR GKT++ A + + P
Sbjct: 31 PDPWQVEAF--------------TTRATEVALRVGRQSGKTSVLAARAVEELHV-PESLT 75
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+C+A +E Q K + E+ + L + ++ +
Sbjct: 76 LCVAPAERQAK-IIAREIGRQLQ-------------RTSLVINRPTQTELEIANGARVIA 121
Query: 171 TMCRTYSEERPDTFVGHHN-TYGMAIINDEASGTP-----DVINLGILGFLTERNANRFW 224
P T +I DE + + + +L LTE
Sbjct: 122 L---------PSTSDTIRGFPAVSCLIIDECAFLQGDGGGEDLISSVLPMLTEDG---QV 169
Query: 225 IMTSNPRRLSGKFYEIF--NKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
+S P + F +F KP D R + + + E + + R
Sbjct: 170 FFSSTPAGKNNYFARLFLDAKPGDGIHRIVVRGTDIPRLADK-VERMRRTLS--ATKFRQ 226
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPC 311
E+ + ++ L+IIE+A ++
Sbjct: 227 EILVEMLAD-GQAYFDLSIIEQATSKTEK 254
>gi|160700654|ref|YP_001552334.1| gp5 [Mycobacterium phage Giles]
gi|159136604|gb|ABW88400.1| gp5 [Mycobacterium phage Giles]
Length = 544
Score = 58.0 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/377 (12%), Positives = 104/377 (27%), Gaps = 53/377 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ + + A + + + R GKT L A +++ + G ++
Sbjct: 78 WQWDAARKIMATRPDGLWAH----PDVCLIIPRQNGKTQLIALRIIYGL-FFLGEKIVYT 132
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A +K + + + + P ++ + P + H + + M
Sbjct: 133 AQRWQTVKDV-YDRIVEIIKRRP-SLLRRLKPMPGVPDGYSEAGQHGEIYTTNGGSLDMG 190
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS----- 228
I DEA DV+ G+ G + +++
Sbjct: 191 PRTKAVGRGQTK------IDLAIFDEAYDIKDVLVGGLTGAQKAATNPQTIYISTAAVAS 244
Query: 229 --------------NPRRLSGKFYEIFNKP----LDDWKRFQIDTR----TVEGIDPSFH 266
R+ + + P DD + +++ TV D +
Sbjct: 245 EHPDCGVLAGMRRNGQRKEPDLYAAEWCAPPGMARDDPEAWRLACPSFGITVRERDLARE 304
Query: 267 EGIIARYGLDSDVTRVEVC--GQFPQQDIDS--FIPLNIIEEALNREPCPDPYAPLIMGC 322
+ + + G++P ++ I + E P +
Sbjct: 305 YRMARANARLLAIYDADYLGWGEWPPDPENTEPIIDPDWWEALT----VLQPALVGDICI 360
Query: 323 DIAEEGG--DNTVVV---LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
I + G V + W ++ + LVE + P AII+D
Sbjct: 361 AIERTLDTRYWCIAAGQRTIDGRVHVEVGYWRAANIGVVAAALLELVELWNPAAIIVDDR 420
Query: 378 NTGARTCDYLEMLGYHV 394
+ + G +
Sbjct: 421 SKAKPIVGVMFNQGIEI 437
>gi|153953117|ref|YP_001393882.1| hypothetical protein CKL_0480 [Clostridium kluyveri DSM 555]
gi|219853766|ref|YP_002470888.1| hypothetical protein CKR_0423 [Clostridium kluyveri NBRC 12016]
gi|146345998|gb|EDK32534.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219567490|dbj|BAH05474.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 521
Score = 58.0 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 56/448 (12%), Positives = 120/448 (26%), Gaps = 59/448 (13%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
+ + ET QKL L F+ K T L F Q +F+E +
Sbjct: 1 MGLSKETAQKLKYLWEDGHEIEWIETFIKIV----NKDTKLVPFILTPE-QKKFVEELVK 55
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ G + R +G + + L + P + + +++ + +
Sbjct: 56 Y--------------GIVLKSRQLGISVIIIALSIRQCIVYPNSNCLLVSHDQKS-CNAI 100
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ ++ + + LP + + + S
Sbjct: 101 FDKLKQQFNSLPMWLKPKENA-----------------NNRQEIKMANGSKISAVCAGNK 143
Query: 185 VGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
+ E + P+ I L + T+N Y
Sbjct: 144 DVGRGDTLHLVHLSEFAFWKMPEKQLNSITQALA-PDGKLIIESTANGLNYFYNLYFQAK 202
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ +K F + + +E + Y ++ ++V ++ + +
Sbjct: 203 NNENSYKSFFFNWIDGSTLFEKDYENSVEIYKAKNNNELLKVEELNDEEKELVNLG-ATM 261
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGD-----NTVVVLRRGPVIEHLFDWSKTDLRTTN 357
E+ + R + + D +T + I + K +
Sbjct: 262 EQLMWRRLKVASGG--LDAFHMEYPSQDIEAFISTGANVFDNKRITEVQRSIKKNNYIPK 319
Query: 358 NKISGLVEK----YRPDAIIIDANNTGARTC-----DYLEMLGYHVYRVLGQKRAVDLEF 408
N I+ L + Y I G + L + V V Q EF
Sbjct: 320 NNITDLPLELQKFYGRSFFIYQIPQVGQKYYIGCDLSEGVGLDHSVVEVFSQDGEQVAEF 379
Query: 409 CRNRRTELHVKMADWLEFASLINHSGLI 436
N+ +MA+ + + L+
Sbjct: 380 YNNKVKP--YQMAEIINMIGRYYNKALL 405
>gi|91976453|ref|YP_569112.1| hypothetical protein RPD_1976 [Rhodopseudomonas palustris BisB5]
gi|91682909|gb|ABE39211.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
BisB5]
Length = 370
Score = 58.0 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/383 (12%), Positives = 93/383 (24%), Gaps = 56/383 (14%)
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
RP + + S + + S L P E +
Sbjct: 14 RPHRRIALIGESWQDAREVMVEGESGLLRCSPRAERPEWIASRRRLE------------- 60
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANR 222
D G A DE + + + L R
Sbjct: 61 -----WRNGAVGQVFSADDPDGLRGPQFDAAWCDELAKWRYAEACFDTLQFGLRLGLQPR 115
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
+ T+ R + P + + P+F + ++ RY + + R
Sbjct: 116 QLVTTTP--RPLPLIKRLLADPRTR-VTRAPTKANADHLSPAFLDAVVGRYA-GTRMGRQ 171
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG---DNTVVVLRRG 339
E+ G+ + D+ +IE R P A +++ D D +V
Sbjct: 172 ELDGELIEDRADALWSRALIETC--RVAQPPGLARVVVAIDPPGTSKRGADACGIVAAGR 229
Query: 340 -----PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
+ + K + + D++I + N G L V
Sbjct: 230 SDSGAYYVLEDASAAGLSPAAWAAKAVAMYRRLDADSLIAEVNMGGEMVRAVLRETDASV 289
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
R E + + ++ L+++ +T
Sbjct: 290 PLKEVHA---TRGKY--LRAEPVAALYEQGKVKHVGCFP---LLEDEMCDFGIDGLSTNR 341
Query: 453 LAIESKRVKGAKSTDYSDGLMYT 475
S D D L++
Sbjct: 342 ------------SPDRLDALVWA 352
>gi|237710644|ref|ZP_04541125.1| phage terminase large subunit [Bacteroides sp. 9_1_42FAA]
gi|229455366|gb|EEO61087.1| phage terminase large subunit [Bacteroides sp. 9_1_42FAA]
Length = 461
Score = 58.0 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/255 (16%), Positives = 81/255 (31%), Gaps = 36/255 (14%)
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQF-PQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
DP++ ++ + ++ G + + D I L +E AL R +
Sbjct: 212 DPTYLANLVNQSDEQRA---RDLDGNWKYKAAGDDIIKLTHME-ALYRNSMQIGDGIRRV 267
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIIIDANN 378
CD A EGGD+ V+ L G I +F K D + T + + ++E++ R + D N
Sbjct: 268 SCDAAFEGGDSLVMWLWEGWHIRDIFVC-KLDSKKTVDTVKAVLEEWHVREECFTYDLNG 326
Query: 379 TGARTCDYLEMLGYHVYRVLGQKRAVDLEFC--RNRRTELHVKMADWLEFASLINHSGLI 436
G + + ++ + N +++ A + + L+
Sbjct: 327 LG----QIFKGFFPNAIPFNNKEAVEEKFKYIYTNLKSQAAYLFAQKIINREISIEPTLL 382
Query: 437 QNLKSLKSFIVPNTGEL---------AIESKRVKG-------------AKSTDYSDGLMY 474
+ S K F ++ E KG S D+ + L+
Sbjct: 383 ERKFSGKGFEKVPLRQILDKERKAIRKDEDSEEKGWTIIKKIIMKKLVGHSPDFIEALLM 442
Query: 475 TFAENPPRSDMDFGR 489
Sbjct: 443 RMIFEIKHKRKHIKG 457
>gi|213621887|ref|ZP_03374670.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 94
Score = 58.0 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 411 NRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD 467
N + L +K D + L + + Q+ +++ + E+ R + A D
Sbjct: 7 NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHAD 66
Query: 468 YSDGLMYTFAENPPRSD 484
+ M+ P + +
Sbjct: 67 LAWATMHALFNEPLQGE 83
>gi|330858353|ref|YP_004414707.1| Gp2 [Propionibacterium phage PAS50]
gi|260066564|gb|ACX30842.1| Gp2 [Propionibacterium phage PAS50]
Length = 503
Score = 58.0 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/405 (11%), Positives = 96/405 (23%), Gaps = 45/405 (11%)
Query: 32 VLHFFPWGEKGTPLEGFSA--PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ G L P WQ + + L N + R G
Sbjct: 16 AAYSVSAGNDAGELGRAYGLTPDPWQQQVL----DDWLAVGGNGRLASGVCGVFVPRQNG 71
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K + + L+ + + G ++ A+ + S + + + M
Sbjct: 72 KNAILEIVELFKATIQ-GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYRMVKSIRA 130
Query: 150 PAPWYSDVL-HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
+ VL H + E + ++ DEA D
Sbjct: 131 TNGQEAIVLHHPDCATFERKCGCPGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQL 190
Query: 209 LGILGFLT---ERNANRFWIMTSNPRRLSG----KFYEIFNKPLDDWKRFQIDTRTVEGI 261
+L ++ + + ++ T G + + +
Sbjct: 191 EALLPTVSAAPSGDPQQIFLGTPPGPLADGSVVLRLRGQALSGGKRFAWTEFSIPDESDP 250
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLI 319
D + + + R G + ++ A R A +
Sbjct: 251 DDVSRQWRKLAGDTNPALGRRLNFGTVSDEHE----SMSAAGFARERLGWWDRGQSAASV 306
Query: 320 MGCD-IAEEGGDNTVVV---------LRRGPVI-------------EHLFDWSKTDLRTT 356
+ D A+ D +V R G + + D +
Sbjct: 307 VPADKWAQSAVDEASLVGGKVFGVSFSRSGDRVALAGAGRTDAGVHVEVIDGLSGTIVDG 366
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCD-YLEMLGYHVYRVLGQ 400
+++ + D I +GA L G V+
Sbjct: 367 VGRLADWLAVRWGDTDRIMVAGSGAVLLQKALTDRGVPGRGVVVA 411
>gi|302876772|ref|YP_003845405.1| Terminase [Clostridium cellulovorans 743B]
gi|307687453|ref|ZP_07629899.1| Terminase [Clostridium cellulovorans 743B]
gi|302579629|gb|ADL53641.1| Terminase [Clostridium cellulovorans 743B]
Length = 533
Score = 58.0 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 63/468 (13%), Positives = 120/468 (25%), Gaps = 99/468 (21%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEF 58
R+L T+ K D ++ E F+ K T E ++ P WQ +
Sbjct: 1 MRKLKKYVPTKFKAKDSIYDKEAADFVVAFIEQL-----KHTKGEFYNQPFELIDWQEQI 55
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC--LANS 116
+ + + + I + GK+ L A + L+++ A
Sbjct: 56 IRDIFGTL---KPDGYRQFTTAYIEVPKKCGKSELAAAIALYMLCADGEQRAEVYGCAAD 112
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
Q + ++ + L P ++G + S +
Sbjct: 113 RDQA-SLVFDVACDMVRLSPA-----------LMKRCDLRPSRKTIGFGPTNSSYKALSA 160
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVIN--LGILGFLTERNANRFWIMTSNPRRLS 234
G ++ DE D + G R +I+T+ +
Sbjct: 161 D------VAGKSGVNVSCLVFDELWVQKDRKFFDMMTKGTSDARRNPLHFIITTAGNDTN 214
Query: 235 GKFYEIFNK----------------------PLDDWKRFQIDTRTVEGIDPSF-HEGI-- 269
YE+ K DDW ++ + +D + E +
Sbjct: 215 SICYELHQKAVDILEGRKVDPTFYPVIYGADQEDDWTDPEVWRKANPSLDITIGIEKVQA 274
Query: 270 ----IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIA 325
+ + + R Q+ +Q + A N G D++
Sbjct: 275 ACDSAKQNPGEENAFRQLRLNQWVKQAVRWMPMDKWDACAENIREEDLEGRVCYGGLDLS 334
Query: 326 EEGG---------------------------DNTVVVLRRGPVIEHLFDWSK-------- 350
D + +RR V +++
Sbjct: 335 STTDLTSFVLVFPPLDADDKYIVLPYFWVPEDTLELRVRRDHVPYDIWERDGYLQTTEGN 394
Query: 351 -TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I L EKY I D + LE +G+ V +
Sbjct: 395 VVHYGFIEKFIEQLGEKYNIREIAFDRWGA-VQMVQNLEGMGFTVVPM 441
>gi|301022207|ref|ZP_07186122.1| conserved hypothetical protein [Escherichia coli MS 69-1]
gi|300397620|gb|EFJ81158.1| conserved hypothetical protein [Escherichia coli MS 69-1]
Length = 553
Score = 58.0 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/450 (10%), Positives = 91/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + +
Sbjct: 41 DPEVVERFIAFSRVCPHVKGAMRGSPIELEP--WQQFAFACILGFKVKATGRRKYTSAFI 98
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
+ R K+T+ A L W + G I A ++ + +
Sbjct: 99 EVP--RKNAKSTVAAILANWFLVMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRK 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVIHPKTNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKP 244
+ I S + + I+ S + ++
Sbjct: 217 PEGLLFAITTSGSNV--------VSACKQHYDYCCQILDGEEMNESMFVLIYELDDESEV 268
Query: 245 LDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTR--VEVCGQFPQQDIDSFIPLNI 301
D + + +D I G+ S + + Q
Sbjct: 269 DDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMLTKRFNIWCQGATPWMGNGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV-------------------------- 335
E A G D++ ++V
Sbjct: 329 AECAGTFAEADLYGQECYAGLDLSSTSDISSVCYAFPVGKKIMLVSRHYLPEFQLQNPAN 388
Query: 336 -----LRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
R+ + D + I E + + D N L+
Sbjct: 389 KNRAIYRQWVKAGWIRTTPGDCIDYDRIRDDIMADAENFNIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRVL-----GQKRAVDLEFCRNRR 413
G+ V A E NR+
Sbjct: 448 GAGFEVEPFPQTYLRFSPAAKSFEVFVNRK 477
>gi|71065561|ref|YP_264288.1| PBSX family phage terminase large subunit [Psychrobacter arcticus
273-4]
gi|71038546|gb|AAZ18854.1| phage terminase, large subunit, PBSX family [Psychrobacter arcticus
273-4]
Length = 421
Score = 58.0 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/339 (12%), Positives = 88/339 (25%), Gaps = 30/339 (8%)
Query: 84 AGRGIGKTTLNAWLVLW----LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT A + L ++C L + E+ + +
Sbjct: 34 GGRGSGKTRTFALMTAVEGYRLAEAGASGIILCGREFMNSLNESSLEEIKQAIK------ 87
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
S+S + + Y+ ++ + + DE
Sbjct: 88 -----SVSWLNDYYEIGEKYIRTKNRRVAYAFTGLRHNLDSIKGKSRI-----LLAWVDE 137
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A + +L + E ++ + T NP + F + ++
Sbjct: 138 AENVSEAAWRKLLPTVREDDSEVWI--TWNPENKGSATDKRFRQVEHEFIVEMNHNDNPF 195
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
D E + + LD R G + + + R P P
Sbjct: 196 FPDVLEQERLNDQENLDDATYRWIWEGAYLEASDAQIFNGKFVVREFERHPTW--NGPYN 253
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLF---DWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
G D I ++ ++ T + + + +I D
Sbjct: 254 -GLDFGFSTDPTGATNSWESDGILYIEYEACKVGLEIDDTPDYLKDNIPGIEKYELIAD- 311
Query: 377 NNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
N + YL+ G + + + + + +
Sbjct: 312 -NARPESISYLKRNGIPKIKACVKGKGSVEDGIAHLKGY 349
>gi|298376117|ref|ZP_06986073.1| phage terminase large subunit [Bacteroides sp. 3_1_19]
gi|298267154|gb|EFI08811.1| phage terminase large subunit [Bacteroides sp. 3_1_19]
Length = 542
Score = 58.0 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/337 (14%), Positives = 86/337 (25%), Gaps = 22/337 (6%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVI 111
WQ + + N +S R GKT L A L L+ + G V+
Sbjct: 74 WQQFIIANIVGFYWKGTNTRRYTSSYIEVS--RKQGKTALAAALCLYYLIADGEDGAEVL 131
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
ANS+ Q K + SK+ L +K + + + L DSK
Sbjct: 132 LAANSKEQAK-IAFDMCSKFSKGLDSKGKYLTAYRADILFNLTNSKLKVLAADDSK---L 187
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI------ 225
S D + N+ +I + I ++ + +
Sbjct: 188 DGFNASFGLLDEYHAAKNSKVRDVIKSSMGMRMNPHLCTITTAGFDKTLPCYQLRTVAIE 247
Query: 226 -MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA-------RYGLDS 277
+ DDW+ + +D + I D
Sbjct: 248 VLNGLKIDDEMFIAIYSLDADDDWRDEMNWVKCAPNLDITVTSKYIRGQVQQAINNPADE 307
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
+ + + II+ + + +G D+A V L
Sbjct: 308 VGVKTKTLNLWCDSSYVWLPEDYIIKCSKEVDLNKFAGMDCYVGVDLAATSDLTAVAYLV 367
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ +K + KY +
Sbjct: 368 VQDGTYYFKTHYYLPESALKDKADKELYKYWKQQSYL 404
>gi|213580961|ref|ZP_03362787.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 96
Score = 58.0 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 411 NRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD 467
N + L +K D + L + + Q+ +++ + E+ R + A D
Sbjct: 9 NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHAD 68
Query: 468 YSDGLMYTFAENPPRSD 484
+ M+ P + +
Sbjct: 69 LAWATMHALFNEPLQGE 85
>gi|290894028|ref|ZP_06557002.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|290556372|gb|EFD89912.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
Length = 587
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 49/351 (13%), Positives = 94/351 (26%), Gaps = 30/351 (8%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
+L E ++ +E FV E F + WQ + V
Sbjct: 60 NDLKRQGTDEFPW---IFDEEKGHRPIRFVEENC--KPTEGDFEKFIL-QPWQHFVVGSV 113
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQL 120
+ + GR GKT+L + L ++M G ++ LAN++ Q
Sbjct: 114 FGWVHKDTGV--RRFREALVFLGRKNGKTSLISALSNYMMGYDEEQGANIYVLANAKEQA 171
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSL--------HPAPWYSDVLHCSLGIDSKHYSTM 172
L+ + + + + P ++ SD
Sbjct: 172 -NILFEKTKEMVKMSPRLAGKFKNQRNVIKDEKSFSKMEARASDSRKLDGLNTHFAIFDE 230
Query: 173 CRTYSEER----PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ + + I + I L + T
Sbjct: 231 IHEFVNFKLINVIKKSRAARRQPLLMYITTAGYILDGPLMQYIENAL---DCAAHMQDTL 287
Query: 229 NPRRLSGKFYEIFNKPLDD---WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
N R + DD W + + + +D R + +
Sbjct: 288 NERVFYFIAKLDNVQEADDPKMWLKSNPNLLLMNFVDLVADWLTERRIPEERADWITKQF 347
Query: 286 GQFPQQDIDSFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVV 335
F D S++ + I++ + + I+G D++E VVV
Sbjct: 348 NLFSNIDELSYVDMPTIDKNNKQVDLATLQGKEAIIGYDLSETEDFTAVVV 398
>gi|168236907|ref|ZP_02661965.1| putative phage terminase, large subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194737485|ref|YP_002117149.1| putative phage terminase, large subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194712987|gb|ACF92208.1| putative phage terminase, large subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197289995|gb|EDY29354.1| putative phage terminase, large subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 558
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 53/390 (13%), Positives = 100/390 (25%), Gaps = 55/390 (14%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+W E +F + F+ WQ + V ++
Sbjct: 34 VWDTETAQRAIDFFAKVLKLNGGEHEGKPFNL-LPWQCFIVGSVFGW---KNSDGYRRFR 89
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ +G+G GK+ L A + L+ + P V A + Q L+ + + P
Sbjct: 90 MVYVESGKGSGKSPLAAGIALYCLVADKEPRAEVYAAATKKDQAM-ILFRDAVAMVDQSP 148
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF-VGHHNTYGMAI 195
+ ++ S G + +T S RP + G
Sbjct: 149 A----------------LAQRINKSGGAGKEWNLAFLQTGSFFRPISSDDGQSGPRPHCA 192
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIFNKPL-------DD 247
+ DE + + ++ T+ M +N + Y+ DD
Sbjct: 193 LIDEIHEHKNNQVVEMMRAGTKGRRQALIFMITNSGHDKTSVCYDYHEYGRKVAEGSVDD 252
Query: 248 WKRFQIDTRTVEGIDP---------------------SFHEGIIARYGLDSDVTRVEVC- 285
F EG DP E + G+ S + V
Sbjct: 253 DSFFSFICSLDEGEDPFKDETCWKKANPSLGHTFTERYLREQVTQARGMPSKESIVRRLN 312
Query: 286 -GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEH 344
Q+ D + + + G D++ + +
Sbjct: 313 FCQWVDADNPWMSSDVWMGCEEDFDLQELRGEECYGGLDLSGSRDLTALALFFPKKRKLV 372
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ W+ D T K + I
Sbjct: 373 VEFWTPKDTLTDRAKTDRVPYDAWERDGYI 402
>gi|148560043|ref|YP_001258583.1| putative terminase large subunit [Brucella ovis ATCC 25840]
gi|148371300|gb|ABQ61279.1| putative terminase large subunit [Brucella ovis ATCC 25840]
Length = 380
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 53/414 (12%), Positives = 104/414 (25%), Gaps = 69/414 (16%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V + P + + + + + S LS+
Sbjct: 2 GGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVSRL 61
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
V + + + A
Sbjct: 62 -------------------VRPRYEASRRRLIWDNGAVATLFSSEDADSLRGPQFDAAWC 102
Query: 198 DEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + P + L + R + T+ + +
Sbjct: 103 DELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMRTA 159
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ F + I RY + + R E+ G+ ++ + + IE+ P P
Sbjct: 160 ENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPPL 216
Query: 316 APLIMGCDI---AEEGGDNTVVVLR-----RGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
A +++ D + + D +V+ + + + L +
Sbjct: 217 ARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYHTH 276
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLE 425
DAI+ + N G V KR R E + + +
Sbjct: 277 EADAIVAEVNQGGEMVAAED-------PSVPVLKRRASRGKW--LRAEPVAALYEQGRVR 327
Query: 426 F-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ G + S +S D D L++ E
Sbjct: 328 HAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 365
>gi|255652557|ref|ZP_05399459.1| hypothetical protein CdifQCD_20411 [Clostridium difficile
QCD-37x79]
Length = 591
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/367 (11%), Positives = 94/367 (25%), Gaps = 75/367 (20%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
RG K+ + A P + A +++Q + + ++ K L M
Sbjct: 70 ARGFAKSWIAAVYACCRAVLYPNSKIGIAAFTKSQAELIIREKIEKELVK-----QSPML 124
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ + + + + S + + S +I DE
Sbjct: 125 AREIKKIEYNNKFSKVTFHNGSTIEAIVSNEQS----------RGFRFNILIVDEFRLVK 174
Query: 205 DVINLGILGFLTERNANRFW------IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
I IL + N + + + + + +F++ + +
Sbjct: 175 KEIQDRILKPFLNVSRNLKFKKDGKYEDYPPEPNKELYLSSAWFRMHEAYDKFKLYVKDM 234
Query: 259 -------------------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+D + + D+ +E+ F ++ D+
Sbjct: 235 VDGRDKFVLNCNYKLSLHHGILDKERADEMKREM--DAVSWIMEMESLFFGENEDAIFKS 292
Query: 300 NIIEEAL----------------------NREPCPDPYAPLIMGCDIA---EEGGDNTVV 334
+ + I+ DIA + DN+V
Sbjct: 293 SYVNPCRTLKNPFYPPTDLEILSAKNGKVKCNLQKRKGELRIISADIAVAEGDNNDNSVY 352
Query: 335 VLRRG--------PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
R ++ H+ + ++ L + D ++ID G
Sbjct: 353 TCWRLLPEKDYYERMVVHIESHNGMKPDKQAIRLKQLFFDFEADFLVIDTQGVGQSVLSD 412
Query: 387 LEMLGYH 393
L + Y
Sbjct: 413 LLRVNYD 419
>gi|193062487|ref|ZP_03043581.1| terminase [Escherichia coli E22]
gi|192931609|gb|EDV84209.1| terminase [Escherichia coli E22]
Length = 433
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 61/437 (13%), Positives = 114/437 (26%), Gaps = 65/437 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P FK I AG G GKT + + + PGI+ A + Q++
Sbjct: 7 NVPQARFLSMPHKFKAYI-AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIF 65
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ V E + ++ + Y S E+P T
Sbjct: 66 YPTV-------------EEVAADWGLNVKINEGNKEVHFYYGRQYRGTTICRSMEKPQTI 112
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTER------NANRFWIMTSNPRRLSGKFY 238
VG + DE P + R +T+ P +
Sbjct: 113 VGFKIGNAL---VDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYE 169
Query: 239 EIFNKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + Q T E + + ++ Y ++ + + G+F
Sbjct: 170 QFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLLGRFTNL 227
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ + N E P P+ +G D V VLR G +
Sbjct: 228 TSGTVYH-QFDRKLNNCEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAY 286
Query: 352 DLRTTNNKISGL--------VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYR 396
D I K R I DA+ ++ L+ G++V
Sbjct: 287 DTPDMIRLIKERFWLYDGHDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV-- 344
Query: 397 VLGQKRAVDLEFCRNRRTELHVKM----ADWLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
V+ + N + + + + +
Sbjct: 345 VVNSSNPPVKDR-VNSMNAMFCNANGERRYKVNVKRCP----VYAESLEQQVWDDKG--- 396
Query: 453 LAIESKRVKGAKSTDYS 469
E + G + +
Sbjct: 397 ---EPDKKSGNDHPNDA 410
>gi|148727084|ref|YP_001285578.1| gp2 [Propionibacterium phage PA6]
gi|91982908|gb|ABE68571.1| gp2 [Propionibacterium phage PA6]
Length = 503
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 47/405 (11%), Positives = 97/405 (23%), Gaps = 45/405 (11%)
Query: 32 VLHFFPWGEKGTPLEGFSA--PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ G L P WQ + + L +N + R G
Sbjct: 16 AAYSVSAGGDAGELGRAYGLTPDPWQQQVL----DDWLAVGSNGRLASGVCGVFVPRQNG 71
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K + + L+ + + G ++ A+ + S + + + M
Sbjct: 72 KNAILEIVELFKATIQ-GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYRMVKSIRA 130
Query: 150 PAPWYSDVL-HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
+ VL H K E + ++ DEA D
Sbjct: 131 TNGQEAIVLHHPDCATFEKKCGCSGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQL 190
Query: 209 LGILGFLT---ERNANRFWIMTSNPRRLSG----KFYEIFNKPLDDWKRFQIDTRTVEGI 261
+L ++ + + ++ T G + + +
Sbjct: 191 EALLPTVSAAPSGDPQQIFLGTPPGPLADGSVVLRLRGQALGGGKRFAWTEFSIPDESDP 250
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR--EPCPDPYAPLI 319
D + + + R G + ++ A R A +
Sbjct: 251 DDVSRQWRKLAGDTNPALGRRLNFGTVSDEHE----SMSAAGFARERLGWWDRGQSAASV 306
Query: 320 MGCD-IAEEGGDNTVVV---------LRRGPVI-------------EHLFDWSKTDLRTT 356
+ D A+ D +V R G + + D +
Sbjct: 307 VPADKWAQSAVDEASLVGGKVFGVSFSRSGDRVALAGAGKTDAGVHVEVIDGLSGTIVDG 366
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCD-YLEMLGYHVYRVLGQ 400
+++ + D I +GA L G V+
Sbjct: 367 VGRLADWLAVRWGDTDRIMVAGSGAVLLQKALTDRGIPGRGVVVA 411
>gi|284921252|emb|CBG34318.1| phage protein [Escherichia coli 042]
gi|323942326|gb|EGB38497.1| terminase [Escherichia coli E482]
Length = 433
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 62/437 (14%), Positives = 114/437 (26%), Gaps = 65/437 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P FK I AG G GKT + + + PGI+ A + Q++
Sbjct: 7 NVPQARFLSMPHKFKAYI-AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIF 65
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ V E + ++ + Y S E+P T
Sbjct: 66 YPTV-------------EEVAADWGLNVKINEGNKEVHFYYGRQYRGTTICRSMEKPQTI 112
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTER------NANRFWIMTSNPRRLSGKFY 238
VG + DE P + R +T+ P +
Sbjct: 113 VGFKIGNAL---VDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYE 169
Query: 239 EIFNKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + Q T E + + ++ Y ++ + + GQF
Sbjct: 170 QFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNL 227
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ + N E P P+ +G D V VLR G +
Sbjct: 228 TSGTVYH-QFDRKLNNCEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAY 286
Query: 352 DLRTTNNKISGL--------VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYR 396
D I K R I DA+ ++ L+ G++V
Sbjct: 287 DTPDMIRIIKERFWLYDGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV-- 344
Query: 397 VLGQKRAVDLEFCRNRRTELHVKM----ADWLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
V+ + N + + + + +
Sbjct: 345 VVNSSNPPVKDR-VNSMNAMFCNANGERRYKVNVKRCP----VYAESLEQQVWDDKG--- 396
Query: 453 LAIESKRVKGAKSTDYS 469
E + G + +
Sbjct: 397 ---EPDKKSGNDHPNDA 410
>gi|332768290|gb|EGJ98475.1| hypothetical protein SF293071_0834 [Shigella flexneri 2930-71]
Length = 65
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 433 SGLIQNLKSLKSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAE 478
L L + G + +ESK+ + S + +D + FA
Sbjct: 3 EKLKLELTT-PHRDFDRNGRVMVESKKDLAKREIPSPNVADAFIMAFAP 50
>gi|300825021|ref|ZP_07105118.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
119-7]
gi|300522485|gb|EFK43554.1| phage terminase, large subunit, PBSX family [Escherichia coli MS
119-7]
Length = 435
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 61/437 (13%), Positives = 114/437 (26%), Gaps = 65/437 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P FK I AG G GKT + + + PGI+ A + Q++
Sbjct: 9 NVPQARFLSMPHKFKAYI-AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIF 67
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ V E + ++ + Y S E+P T
Sbjct: 68 YPTV-------------EEVAADWGLNVKINEGNKEVHFYYGRQYRGTTICRSMEKPQTI 114
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTER------NANRFWIMTSNPRRLSGKFY 238
VG + DE P + R +T+ P +
Sbjct: 115 VGFKIGNAL---VDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYE 171
Query: 239 EIFNKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + Q T E + + ++ Y ++ + + G+F
Sbjct: 172 QFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLLGRFTNL 229
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ + N E P P+ +G D V VLR G +
Sbjct: 230 TSGTVYH-QFDRKLNNCEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAY 288
Query: 352 DLRTTNNKISGL--------VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYR 396
D I K R I DA+ ++ L+ G++V
Sbjct: 289 DTPDMIRLIKERFWLYDGHDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV-- 346
Query: 397 VLGQKRAVDLEFCRNRRTELHVKM----ADWLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
V+ + N + + + + +
Sbjct: 347 VVNSSNPPVKDR-VNSMNAMFCNANGERRYKVNVKRCP----VYAESLEQQVWDDKG--- 398
Query: 453 LAIESKRVKGAKSTDYS 469
E + G + +
Sbjct: 399 ---EPDKKSGNDHPNDA 412
>gi|91976441|ref|YP_569100.1| hypothetical protein RPD_1964 [Rhodopseudomonas palustris BisB5]
gi|91682897|gb|ABE39199.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
BisB5]
Length = 386
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/409 (11%), Positives = 103/409 (25%), Gaps = 60/409 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V P + + +E ++ + VS L++ P
Sbjct: 3 GGRGAGKTRGGAEWVRCQALGLPPFASVPAARIALVGETEHDVREVMIEGVSGLLAVHPP 62
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ D +
Sbjct: 63 DQRPNWLPSRKRLE------------------WSNGAVAQAFSADDPESLRGPQFSCAWS 104
Query: 198 DEASGTPDVINLGILGFL---TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE + L A ++T+ PR + + +
Sbjct: 105 DEMAKWR--YAEAAFDMLQFGLRLGAQPRQLITTTPRPSTLLKRLL---GDPSAVTTRAP 159
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
TR + + + R E+ G+ ++ D+ +IE + P
Sbjct: 160 TRANALNLAPTFLQAVMARYAGTRLGRQELDGELIEERPDALWSRALIETCRVADAPPLQ 219
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGP------VIEHLFDWSKTDLRTTNNKISGLVEKYR 368
+ + ++ + ++ G + + NK L +
Sbjct: 220 RLVVAVDPPVSSGKRADCCGIVAAGIAESGVVYVLADDSVAAATPSLWANKAIALWRRLC 279
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLEF 426
DA++++ N G + + +V R E + + ++
Sbjct: 280 ADALVVEINQGGEMVKTVIGEVDGNV---PVTPVRAFRGKW--LRAEPVATLYEQGRVKH 334
Query: 427 ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
A + L + +G +S D D +++
Sbjct: 335 AGCF--AALEDEMC-----DFGASGL--------SNGRSPDRLDAMVWA 368
>gi|118462814|ref|YP_880086.1| phage terminase, large subunit, putative [Mycobacterium avium 104]
gi|118164101|gb|ABK64998.1| phage terminase, large subunit, putative [Mycobacterium avium 104]
Length = 485
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/390 (12%), Positives = 103/390 (26%), Gaps = 59/390 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + + + + F+ + R GK + L M PG+S++
Sbjct: 16 PWQELVVRE----GMATDDAGRWLAFEVGVLVARQNGKNGGIEVVELGWMINEPGVSILH 71
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ ++ L L H ++ + + + +
Sbjct: 72 TAHEFQTAMESMDK-----LEALILSHPLLENEVAQIRRGNGRESIRLKNESIIRFRTRT 126
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
G ++ DEA I+ LT + W + S
Sbjct: 127 KS-----------GGRGFSVDRLVIDEAMIWSPASQAAIMPLLTTAKNPQIWYLGSAADE 175
Query: 233 LSGKFYEIFNKPLDD----------------------------WKRFQIDTRTVEG---- 260
+ ++ + W+ + +
Sbjct: 176 ETHEYCGKWASLRARALAGDDPKLLWLEWSAPEPPEDPAARRVWREDRANWAAANPSMDY 235
Query: 261 -IDPSFHEGIIARYGLDSDVTRVEVC--GQFPQQDIDS-FIPLNIIEEALNREPCPDPYA 316
+ + E +A + D VE G++P+ D P+ + + P
Sbjct: 236 LVTEEYIEDELAAFRRDLAKWEVERLSVGRWPKDITDVHIFPIEKWDALGDGSPDLVNIY 295
Query: 317 PLIMGCD---IAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
P ++ D + + G + K+ +V + P A++
Sbjct: 296 PQVIAVDRDPVTKLWAIAGATRTADGHAHIEIGYNQAASATEVVEKLVDIVTQADPAALV 355
Query: 374 IDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
I++ + A YL G + A
Sbjct: 356 IESRSPAAVLKPYLIEAGIEPVMTNTSELA 385
>gi|304360860|ref|YP_003856980.1| gp8 [Mycobacterium phage CrimD]
gi|302858609|gb|ADL71354.1| gp8 [Mycobacterium phage CrimD]
Length = 473
Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 47/370 (12%), Positives = 100/370 (27%), Gaps = 19/370 (5%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + ++ A+S R GKT +V L PG +VI
Sbjct: 43 DQWQ----DDLGKLVCAKRSDGLYAADMFAMSIPRQTGKTYFLGAIVFALCKMTPGTTVI 98
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ T + + H + + + A +++ L +
Sbjct: 99 WTAHRTRTAAETFKSMQALAKREQIAPHILNVHTGNGKEAVLFTNGSRI-LFGAREKGFG 157
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWIMTSN 229
+ + M + + +P+ ++ G T+ +
Sbjct: 158 RGFAKVDVLIFDEAQILSENAMDDMVPATNASPNGLILFAGTPPKPTDPGEVFTNLRLDA 217
Query: 230 PRRLSGKF------YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
S + + P ++ +++ + DS R E
Sbjct: 218 INGESDDVAYVEISADENDDPDEESTWRKMNPSYPHRTSARAIRRMRKALSWDS--FRRE 275
Query: 284 VCGQFPQ-QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI 342
G + + I ++ + + P +G D++ G + +
Sbjct: 276 AMGIWDKISVHAQVIKPSLWRDLADPLGPEPGAKPASLGVDMSHGGAISIGGCWLIDDEL 335
Query: 343 EHLFD-WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
H+ W+ TD I R ++ID + L+ V
Sbjct: 336 RHVEQVWAGTDTAAAVEFIVE--RAGRRIPVVIDDASPAKSLVPELKRRKVKVRITYAGD 393
Query: 402 RAVDLEFCRN 411
A +N
Sbjct: 394 MAKACGLFKN 403
>gi|327331008|gb|EGE72751.1| hypothetical protein HMPREF9338_01045 [Propionibacterium acnes
HL096PA2]
Length = 503
Score = 57.6 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/405 (11%), Positives = 99/405 (24%), Gaps = 45/405 (11%)
Query: 32 VLHFFPWGEKGTPLEGFSA--PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIG 89
+ G L P WQ + + L +N + R G
Sbjct: 16 AAYSVSAGGDAGELGRAYGLTPDPWQQQVL----DDWLAVGSNGRLASGVCGVFVPRQNG 71
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K + + L+ + + G ++ A+ + S + + + M
Sbjct: 72 KNAILEVVELFKATIQ-GRRILHTAHELKSARKAFMRLRSFFENERQFPDLYRMVKSIRA 130
Query: 150 PAPWYSDVL-HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
+ VL H K E + ++ DEA D
Sbjct: 131 TNGQEAIVLHHPDCATFEKKCGCPGWGSVEFVARSRGSARGFTVDDLVCDEAQELSDEQL 190
Query: 209 LGILGFLT---ERNANRFWIMTSNPRRLSG----KFYEIFNKPLDDWKRFQIDTRTVEGI 261
+L ++ + + ++ T G + + +
Sbjct: 191 EALLPTVSAAPSGDPQQIFLGTPPGPLADGSVVLRLRGQALGGGKRFAWTEFSIPDESDP 250
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI---------------------DSFIPLN 300
D + + + R G + S IP +
Sbjct: 251 DDVSRQWRKLAGDTNPALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQSASSVIPAD 310
Query: 301 -IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR---GPVIEHLFDWSKTDLRTT 356
++ A+ + G + G + R G +E + S T +
Sbjct: 311 KWVQSAVGEAALV---GGKVFGVSFSRSGDRVALAGAGRTDAGVHVEVIDGLSGT-IVDG 366
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCD-YLEMLGYHVYRVLGQ 400
+++ + D I +GA L G V+
Sbjct: 367 VGRLADWLAVRWGDTDRIMVAGSGAVLLQKALTDRGVPGRGVIVA 411
>gi|331677171|ref|ZP_08377867.1| putative phage terminase [Escherichia coli H591]
gi|331075860|gb|EGI47158.1| putative phage terminase [Escherichia coli H591]
Length = 436
Score = 57.6 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 61/437 (13%), Positives = 114/437 (26%), Gaps = 65/437 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P FK I AG G GKT + + + PGI+ A + Q++
Sbjct: 10 NVPQARFLSMPHKFKAYI-AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIF 68
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ V E + ++ + Y S E+P T
Sbjct: 69 YPTV-------------EEVAADWGLNVKINEGNKEVHFYYGRQYRGTTICRSMEKPQTI 115
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTER------NANRFWIMTSNPRRLSGKFY 238
VG + DE P + R +T+ P +
Sbjct: 116 VGFKIGNAL---VDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYE 172
Query: 239 EIFNKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + Q T E + + ++ Y ++ + + G+F
Sbjct: 173 QFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLLGRFTNL 230
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ + N E P P+ +G D V VLR G +
Sbjct: 231 TSGTVYH-QFDRKLNNCEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAY 289
Query: 352 DLRTTNNKISGL--------VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYR 396
D I K R I DA+ ++ L+ G++V
Sbjct: 290 DTPDMIRLIKERFWLYDGHDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV-- 347
Query: 397 VLGQKRAVDLEFCRNRRTELHVKM----ADWLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
V+ + N + + + + +
Sbjct: 348 VVNSSNPPVKDR-VNSMNAMFCNANGERRYKVNVKRCP----VYAESLEQQVWDDKG--- 399
Query: 453 LAIESKRVKGAKSTDYS 469
E + G + +
Sbjct: 400 ---EPDKKSGNDHPNDA 413
>gi|310286612|ref|YP_003937870.1| phage terminase [Bifidobacterium bifidum S17]
gi|309250548|gb|ADO52296.1| phage terminase [Bifidobacterium bifidum S17]
Length = 483
Score = 57.6 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 47/371 (12%), Positives = 90/371 (24%), Gaps = 50/371 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + ++ A + A+S R +GKT + +P +V+
Sbjct: 45 DRWQDDLCRLMLAKRADG--EYAASAGGVAMSLCRQVGKTFTVGTNAAIMCLLQPDFTVL 102
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ +T AE K + + + ++
Sbjct: 103 WTAH-----RTRTSAETFKSMQAIVRQPGLTRHVKAIR-----------RANGQESIEFA 146
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ G I DEA + ++ T N + P
Sbjct: 147 NGSRILFGAREQGFGRGFAGIDMEIFDEAQILTEKALDDMVPA-TNAAKNPLIVFMGTPP 205
Query: 232 RLSGK-------------------------FYEIFNKPLDDWKRFQIDTRTVEGIDPSFH 266
R + + + W + P+
Sbjct: 206 RPNDPGDVFKLKRSQGLANEDGMTYVEFSADRDADPHDRNQWAKANPSY--PTRTKPAAM 263
Query: 267 EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAE 326
++ G DS R E G + + I + ++A E P + +
Sbjct: 264 LRMLKNLGEDS--FRREALGIWDETTDRRAIDPDQWQQAETGERRPGGWVAFGVDMPPDR 321
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP--DAIIIDANNTGARTC 384
+ K + + P AI+IDA +
Sbjct: 322 SRLAIGACMAYPDGTAHIELAQLKNTHTHGTGWAVEWLAQRWPKTSAIVIDAQSPATVLI 381
Query: 385 DYLEMLGYHVY 395
L+ G +V
Sbjct: 382 PDLKKHGANVT 392
>gi|213865314|ref|ZP_03387433.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 171
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 43/148 (29%), Gaps = 19/148 (12%)
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAE 326
D + + +F F + ++ + + +G D A+
Sbjct: 20 PDEYQNLLMCEFVDDLASVFPLSELQACMVDSWEVWTDFHALALRPFGWREVWIGYDPAK 79
Query: 327 --EGGDNTVVVL-------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+ GD+ V+ I W D R + I L E+Y I ID+
Sbjct: 80 GTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDST 139
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVD 405
G + ++ V + +
Sbjct: 140 GVGHGVYENVKAFFPAVREFVYNPNVKN 167
>gi|254776419|ref|ZP_05217935.1| phage terminase [Mycobacterium avium subsp. avium ATCC 25291]
Length = 491
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 55/371 (14%), Positives = 103/371 (27%), Gaps = 44/371 (11%)
Query: 30 NFVLHF--FPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRG 87
F + KG R WQ+ + +P+P GAI RG
Sbjct: 27 RFAAFASRYLVVPKGKGAGQKMRLRPWQMGMLR--------PFLDPDPRPLVGAIMGPRG 78
Query: 88 IGKTTLNAWLVLWLMSTRPGIS-VICLANSETQLKTTLWA-----EVSKWLSLLPNKHWF 141
+GKT + A L L+ + P + + +A E L E++ L+ +
Sbjct: 79 LGKTGIFAALGLYELFCGPDGNEIPIVAVDERMAGRLLKPAAQMVELNDELAARAVVYRD 138
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG-HHNTYGMAIINDEA 200
++ + + E PDT+ +
Sbjct: 139 RIEVPGKRSTLTALPAEAKRIEGLGTWTLALADELGEIDPDTWSTLLLGAGKLDGAMALG 198
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
GTP +L L E +NP + FYE + + +
Sbjct: 199 IGTPPNRETSVLTDLREACR-------ANPDDRTMAFYEFSADGFEHHPVSCVHCLELAN 251
Query: 261 ------IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ ++ + R + Q + F+ + + P PD
Sbjct: 252 PQLDDLLSRDRATALLKQTTEGE--YRRKRLCQVVTTNESPFVDADTWDGLKAPHPVPDG 309
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR----------TTNNKISGLV 364
+++ D D+T +V+ + H + I
Sbjct: 310 AD-VVIALD-GSLKDDSTALVVGTVGKVPHFDRLDAWENPGDEAWRVPVLDVEQAIREAA 367
Query: 365 EKYRPDAIIID 375
+++R I D
Sbjct: 368 KRWRVREIAFD 378
>gi|117623621|ref|YP_852534.1| putative phage terminase [Escherichia coli APEC O1]
gi|331672908|ref|ZP_08373694.1| putative phage terminase [Escherichia coli TA280]
gi|115512745|gb|ABJ00820.1| putative phage terminase [Escherichia coli APEC O1]
gi|309701027|emb|CBJ00325.1| phage protein [Escherichia coli ETEC H10407]
gi|331070129|gb|EGI41498.1| putative phage terminase [Escherichia coli TA280]
Length = 436
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 62/437 (14%), Positives = 114/437 (26%), Gaps = 65/437 (14%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P FK I AG G GKT + + + PGI+ A + Q++
Sbjct: 10 NVPQARFLSMPHKFKAYI-AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIF 68
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ V E + ++ + Y S E+P T
Sbjct: 69 YPTV-------------EEVAADWGLNVKINEGNKEVHFYYGRQYRGTTICRSMEKPQTI 115
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTER------NANRFWIMTSNPRRLSGKFY 238
VG + DE P + R +T+ P +
Sbjct: 116 VGFKIGNAL---VDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYE 172
Query: 239 EIFNKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + Q T E + + ++ Y ++ + + GQF
Sbjct: 173 QFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNL 230
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ + N E P P+ +G D V VLR G +
Sbjct: 231 TSGTVYH-QFDRKLNNCEEVEQPGEPIYIGMDFNVGKMAGIVHVLRLGLPCAVTEIINAY 289
Query: 352 DLRTTNNKISGL--------VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYR 396
D I K R I DA+ ++ L+ G++V
Sbjct: 290 DTPDMIRIIKERFWLYDGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNV-- 347
Query: 397 VLGQKRAVDLEFCRNRRTELHVKM----ADWLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
V+ + N + + + + +
Sbjct: 348 VVNSSNPPVKDR-VNSMNAMFCNANGERRYKVNVKRCP----VYAESLEQQVWDDKG--- 399
Query: 453 LAIESKRVKGAKSTDYS 469
E + G + +
Sbjct: 400 ---EPDKKSGNDHPNDA 413
>gi|110005055|emb|CAK99386.1| putative prophage terminase large subunit protein [Spiroplasma
citri]
Length = 568
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/357 (11%), Positives = 97/357 (27%), Gaps = 30/357 (8%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
+ + + T + + D ++ + +F+ + F WQ F+E
Sbjct: 31 IKKIVSTLVKELKSNKDYYFNHKEANKTISFIEKSCFHTTGEYNKQNFKL-ELWQKAFLE 89
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANSET 118
+ N + + GRG GKT L + + L + + +A
Sbjct: 90 ALYGFYDKKTNLRRFKEALLIV--GRGNGKTALASAIALKSLILDNEANAELYSIATKRD 147
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH------PAPWYSDVLHCSLGIDSKHYSTM 172
Q K + E+ + + + PN + +L + ++ +
Sbjct: 148 QAKRV-YEEMRRMIFINPNLNKILKVKRDKIEFIHNNSFFQPLSSETKTLDGLNPYFVVL 206
Query: 173 CRTYSEERPDTFV------GHHNTYGMAIINDEAS---GTPDVINLGILGFLTERNANRF 223
E+ D + Y M +I S D L +
Sbjct: 207 DEVAMMEKRDIYDVMRTATAKRKDYLMLLITTNGSIRENIFDERYSYAEKVLENTIKDNK 266
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ ++ N + + E +I + + +
Sbjct: 267 FLPWIYELDERNEWKNFNNLYKANPNLGISKYID--NFKAEWQEALITPTQQPNFLIKH- 323
Query: 284 VCGQFPQQDIDSFIPLNIIE----EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
+ +E + +N + +G D+++ + VV L
Sbjct: 324 --CNLKSNLDSALFSRLDLETKNNKIINTDEYLIKNRICTIGIDLSKTNDLSAVVFL 378
>gi|182677626|ref|YP_001831772.1| hypothetical protein Bind_0633 [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182633509|gb|ACB94283.1| protein of unknown function DUF264 [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 509
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 45/430 (10%), Positives = 101/430 (23%), Gaps = 45/430 (10%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS--VICLANSETQLKTTL 124
N I G GKT L ++ V+ + + L
Sbjct: 10 QNKAREVLARHRYSCIFGGTRSGKTFLILRAIIHRALRAANSRHAVLRFRGNAARASIAL 69
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ PN H E + S + L + + ++ +
Sbjct: 70 DTFPAVLQRCFPNLHAIEHRQEGYFEFHNGSQIWIGGLDNKDRVEKILGLEFATIFLNEA 129
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
+ + A P++ + + + R + +
Sbjct: 130 SQIPYSSAIIAFTRLAQVVPNIAQRAFVDLNPIGKNHWTNRLFIEHR---DPITLLPLRN 186
Query: 245 LDDWKRFQIDTRTV-EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
D+ +++ + F E + + G F + I
Sbjct: 187 PHDYGSARLNPLDNAHNLSKEFLESLDNLPERQR---KRFFEGVFADEIECVLWSYEQIA 243
Query: 304 EAL--NREPCPDPYAPLIMGCDIAEEGG------DNTVVVL----RRGPVIEHLFDWSKT 351
+ A +++ D + D +++ R G +
Sbjct: 244 ACRCSLDDIPVSERASVVVAVDPSGAANSQDLNADEVGIIIAARNRNGCGFILDDRSLRD 303
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
+Y D I+ ++N GA + +V L
Sbjct: 304 APAVWGRTAVQAYHEYCADCIVAESNFGGAMVEAVIRAADPNVPVRLVTASRGKA----- 358
Query: 412 RRTE--LHVKMADWLEF-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
R E + + L++ + G + G S D+
Sbjct: 359 IRAEPISVLYQRGVVRHAGRF----SLLEEQMC----RFSSHGYM--------GTDSPDH 402
Query: 469 SDGLMYTFAE 478
+D +++
Sbjct: 403 ADAMIHALTY 412
>gi|237815048|ref|ZP_04594046.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|254697001|ref|ZP_05158829.1| Phage DNA packaging protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254729902|ref|ZP_05188480.1| Phage DNA packaging protein [Brucella abortus bv. 4 str. 292]
gi|256257118|ref|ZP_05462654.1| Phage DNA packaging protein [Brucella abortus bv. 9 str. C68]
gi|237789885|gb|EEP64095.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
Length = 407
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 54/416 (12%), Positives = 105/416 (25%), Gaps = 69/416 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + P + + + + + S LS+
Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
V + + + A
Sbjct: 87 RL-------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAA 127
Query: 196 INDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + P + L + R + T+ + +
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMR 184
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ F + I RY + + R E+ G+ ++ + + IE+ P
Sbjct: 185 TAENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVLR-----RGPVIEHLFDWSKTDLRTTNNKISGLVE 365
P A +++ D + + D +V+ + + + L
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYH 301
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--W 423
+ DAI+ + N G V KR R E + +
Sbjct: 302 THEADAIVAEVNQGGEMVAAED-------PSVPVLKRRASRGKW--LRAEPVAALYEQGR 352
Query: 424 LEF-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ +++ G + S +S D D L++ E
Sbjct: 353 VRHAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 392
>gi|9632939|ref|NP_049967.1| putative large subunit terminase [Streptococcus phage Sfi21]
gi|5230827|gb|AAD41029.1|AF112470_4 terminase large subunit [Streptococcus phage Sfi21]
gi|5524034|gb|AAD44086.1|AF115103_2 orf623 gp [Streptococcus phage Sfi21]
Length = 623
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 50/402 (12%), Positives = 104/402 (25%), Gaps = 64/402 (15%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFK 79
+ F P + G P + WQ + ++ + +
Sbjct: 72 YDTAEADKLLRFAR-ICPNVDTGEP----TQLMPWQKFILCMLFGWRNANGGK---RFSR 123
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLL 135
+S GRG GKT L A L + + + Q L + + +
Sbjct: 124 AIVSVGRGQGKTYLMAILTAYSYFIESFGLSNQDYLVTSIKFKQT-NKLLGYIKSMMKQI 182
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
K F+ + + + ++ + + H T +
Sbjct: 183 IQKEPFKSLA---NETELGLHSDQVIMKANNNILRAISAES-----GQYDSFHFTTAIFD 234
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---------KPLD 246
E + ++ + G + N I T+ P S F E +
Sbjct: 235 EMGEIET-RNAVSKIVSGQVKVPNRQFIQISTAYP-NPSVPFREDQMIMQQAMEDDDNRE 292
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYG------------------LDSDV-------TR 281
+ + E + DSD+ +
Sbjct: 293 ADTYLCLVWSQDNLEEVFQPETWMKSNPLLDLEQERDNLMKGLLDKRDSDLLSGNLSDFQ 352
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR---- 337
V+ + D +SF+ L IE A+ + + +G D + + + +
Sbjct: 353 VKNMNCWLLADSNSFLDLKDIENAVIDDFDI-KGKRVYVGLDASMFSDNTALGFVYPYLG 411
Query: 338 -RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
G H+ S I +E+ + ++
Sbjct: 412 EDGSQKWHIEQHSFIPW-QQAGSIEAKIEQDGINYRDLETKG 452
>gi|323171754|gb|EFZ57399.1| terminase, ATPase subunit domain protein [Escherichia coli LT-68]
Length = 102
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 412 RRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
+R+ L +KM + L+ +++ G + E+ R +G D
Sbjct: 18 KRS-LVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVK-TPGGFITYETDRARGISHGDL 75
Query: 469 SDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ M P + + R ++
Sbjct: 76 AWATMLAVINEPIGGEGENERFTVMEF 102
>gi|90423308|ref|YP_531678.1| hypothetical protein RPC_1800 [Rhodopseudomonas palustris BisB18]
gi|90105322|gb|ABD87359.1| protein of unknown function DUF264 [Rhodopseudomonas palustris
BisB18]
Length = 423
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 54/417 (12%), Positives = 112/417 (26%), Gaps = 72/417 (17%)
Query: 84 AGRGIGKTTLNAWLVLWLMS------TRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A + R + + +E ++ + VS L++ P
Sbjct: 40 GGRGAGKTRAGAEWIRAQALGLAPFAERAVSRIALVGETEHDVREVMIEGVSGLLAVHPR 99
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ D +
Sbjct: 100 HERPSWMPSRKRLE------------------WSNGAVAQAFSADDPESLRGPQFACAWS 141
Query: 198 DEASGTP---DVINLGILGFLTERNANRFWIMTSNPR----RLSGKFYEIFNKPLDDWKR 250
DE + ++ G + T P RL G + +
Sbjct: 142 DEMAKWRYAEAAFDMLQFGLRLGPQPRQLITTTPRPTALLKRLLGDPACVTTRAPTRANA 201
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
F + P+F +G++ARY + + R E+ G+ + D+ ++E +
Sbjct: 202 F--------NLAPTFLQGVMARYQ-GTRLGRQELDGEIIEDRADALWSRALLESCRVDDA 252
Query: 311 CPDPYAPLIMGCDI---AEEGGDNTVV-----VLRRGPVIEHLFDWSKTDLRTTNNKISG 362
+++ D + + D + + + +K
Sbjct: 253 P--ALTRIVVAIDPPASSGKRADACGIVAAGICAAGTVYVLADDTVAAATPTLWASKAIA 310
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
L + DA++ + N G + + V + R E + +
Sbjct: 311 LWRRLEADALVAEVNQGGEMVRAVIGEVDATV---PVRSVRASRGKW--LRAEPVAALYE 365
Query: 423 --WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
++ A + L + +G + S +S D D L++ A
Sbjct: 366 QGRVKHAGCF--AALEDEMC-----DFAASG---LSS-----GRSPDRLDALVWAVA 407
>gi|15801322|ref|NP_287339.1| putative terminase of prophage CP-933C [Escherichia coli O157:H7
EDL933]
gi|12514776|gb|AAG55951.1|AE005328_9 putative terminase of prophage CP-933C [Escherichia coli O157:H7
str. EDL933]
Length = 509
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 47/433 (10%), Positives = 88/433 (20%), Gaps = 76/433 (17%)
Query: 46 EGFSAPR--------SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
P WQ + + + + R K+T A L
Sbjct: 12 PHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVP--RKNAKSTTAAIL 69
Query: 98 VLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL--------SLLPNKHWFEMQSLSLH 149
W + G I A ++ + + + H +
Sbjct: 70 ANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRRRVNIQAHKVIHPKSNSL 129
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEASGTPD 205
P + S + + + +G + I S
Sbjct: 130 LKPLAAKAATIEGTNPSLAIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNV-- 187
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGI 261
+ + I+ S + ++ D + + +
Sbjct: 188 ------VSACKQHYDYCCQILDGEEVNESMFVLIYELDDESEVDDPAMWIKANPNIDVSV 241
Query: 262 DPSFHE-GIIARYGLDSD--VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
D I G+ S + + Q E A
Sbjct: 242 DREKLASTIQKARGIPSQWVEMMTKRFNIWCQGATPWMGNGAWAECAGTFTEEDLHGQEC 301
Query: 319 IMGCDIAEEGGDNTVV-------------------------------VLRRGPVIEHLFD 347
G D++ ++V V R+ +
Sbjct: 302 YAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYRQWAKAGWIRT 361
Query: 348 WSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL-----GQ 400
D + I EK+ + D N L+ G+ V
Sbjct: 362 TPGDCIDYDRIRDDIMQDAEKFHIRLVGFDTWNA-THLRTQLQGAGFEVEPFPQTYLRFS 420
Query: 401 KRAVDLEFCRNRR 413
A E NRR
Sbjct: 421 PAAKSFEVFVNRR 433
>gi|306842144|ref|ZP_07474813.1| Phage DNA packaging protein [Brucella sp. BO2]
gi|306287731|gb|EFM59162.1| Phage DNA packaging protein [Brucella sp. BO2]
Length = 366
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/323 (12%), Positives = 83/323 (25%), Gaps = 40/323 (12%)
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIM 226
+ + A DE + P + L + R +
Sbjct: 56 IWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQVVT 115
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
T+ + + + F + I RY + + R E+ G
Sbjct: 116 TTP---RAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYA-GTRLGRQELDG 171
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLRR----- 338
+ ++ + + IE+ P P A +++ D + D +V+
Sbjct: 172 ELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGRASDACGIVVAGIDAEG 229
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ + + L + DAI+ + N G L V
Sbjct: 230 VGHVLADESMTMAKPHQWARRAIALYHTHEADAIVAEVNQGGEMVAAVLAAED---TSVP 286
Query: 399 GQKRAVDLEFCRNRRTELHVKMAD--WLEF-ASLINHSGLIQNLKSLKSFIVPNTGELAI 455
KR R E + + + +++ G +
Sbjct: 287 VLKRRASRGKW--LRAEPVAALYEQGRVRHAGRFPA----LEDEMC----DFAPEG---L 333
Query: 456 ESKRVKGAKSTDYSDGLMYTFAE 478
S +S D D L++ E
Sbjct: 334 SS-----GRSPDRLDALVWALGE 351
>gi|304316279|ref|YP_003851424.1| terminase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302777781|gb|ADL68340.1| Terminase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 550
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 43/347 (12%), Positives = 92/347 (26%), Gaps = 57/347 (16%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLNSVNNPNP 75
M + F K T E + P WQ + + + +
Sbjct: 29 MAEGSRYDKEAADAAVTFINCLKHTKGEWYGMPFELIDWQEQIVRDIFGILKPNGYR--- 85
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ I + GK+ L A + L+L G V A+ Q + ++ +
Sbjct: 86 QFNTAYIEIPKKQGKSELAAAIALYLTCGDFEHGGEVYGCASDRQQA-SIVFDVAVDMVE 144
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
P LS + + Y + + H
Sbjct: 145 QCPAFKSRIKPMLSQKRLVYKP----------------LGSFYQVLSAEAYT-KHGLNVH 187
Query: 194 AIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL------ 245
++ DE P D+ ++ + G R F+++T+ + +E+ K
Sbjct: 188 GVVFDELHAQPNRDLYDVMLHGSGDARKQPLFFLITTAGTDRNSICWEVHQKAEDILQGR 247
Query: 246 ----------------DDWKRFQIDTRTVEGID-PSFHEGII------ARYGLDSDVTRV 282
DDW ++ + + E + + + ++
Sbjct: 248 KIDPTFYPVIYSAADTDDWTSEKVWRKVNPSLGITVDIEKLRVACENAKQNPAEENLFCQ 307
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
Q+ +Q + + A + G D++
Sbjct: 308 LRLNQWVKQSVRWMPMDKWDKCAFPVDAEKLRGRTCYGGLDLSSTTD 354
>gi|283478675|emb|CAY74591.1| putative terminase large subunit [Erwinia pyrifoliae DSM 12163]
Length = 581
Score = 57.6 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 65/297 (21%), Gaps = 26/297 (8%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISV 110
WQ + + I +G+G GK+ L + L+L+ P V
Sbjct: 89 PWQCFIVGSLFGWKAEDGTR---RFRMSYIESGKGSGKSPLAGGVGLYLLMADKEPRAEV 145
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A + Q L+ + + P + W L
Sbjct: 146 YAAATKKDQAM-ILFRDAVTMVDQSPA-LAKRITKSGTGLNVWNLAFLQTGSFFKPISSD 203
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
H A++ +GT + + +
Sbjct: 204 DGQSGPRPHGA-LIDEVHEHKTNAVVEMMRAGTKGRRQALMFLITNSGHDKTSVCFEYHE 262
Query: 231 RRL--------SGKFYEIFNK---PLDDWKRFQIDTRTVEG-----IDPSFHEGIIARYG 274
F+ D +K + E + G
Sbjct: 263 YGRKVAAGDLEDDSFFSFICSLDEGDDPFKDETCWGKANPSLGQTFTAKYLREQVTQARG 322
Query: 275 LDSDVTRVEVC--GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ S + V Q+ + + + +P G D++
Sbjct: 323 MPSKESIVRRLNFCQWVESADPWIDSDTWMNCEQDFDPDELAGEECYGGLDLSGSRD 379
>gi|254693351|ref|ZP_05155179.1| Phage DNA packaging protein [Brucella abortus bv. 3 str. Tulya]
Length = 407
Score = 57.2 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 52/410 (12%), Positives = 105/410 (25%), Gaps = 57/410 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I GRG GKT A V + P A + + + ++ +
Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPP-----FAGKPSGHIALVGETFNDAREMMVDGPSG 81
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ L + + + + A DE +
Sbjct: 82 ILSVSRLVRPRYE--------ASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAAWCDELA 133
Query: 202 GT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
P + L + R + T+ + +
Sbjct: 134 KWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMRTAENAG 190
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ F + I RY + + R E+ G+ ++ + + IE+ P P A ++
Sbjct: 191 NLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PPPLARIV 247
Query: 320 MGCDI---AEEGGDNTVVVLR-----RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
+ D + + D +V+ + + + L + DA
Sbjct: 248 VAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYHTHEADA 307
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLEF-AS 428
I+ + N G V KR R E + + +
Sbjct: 308 IVAEVNQGGEMVAAED-------PSVPVLKRRASRGKW--LRAEPVAALYEQGRVRHAGR 358
Query: 429 LINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+++ G + S +S D D L++ E
Sbjct: 359 FPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 392
>gi|238021116|ref|ZP_04601542.1| hypothetical protein GCWU000324_01014 [Kingella oralis ATCC 51147]
gi|237868096|gb|EEP69102.1| hypothetical protein GCWU000324_01014 [Kingella oralis ATCC 51147]
Length = 408
Score = 57.2 bits (136), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/325 (11%), Positives = 80/325 (24%), Gaps = 28/325 (8%)
Query: 90 KTT-LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
K+ +W + + +C + +K + +AE+ ++ P W E+
Sbjct: 36 KSFNFAKMAAIWGLV--EPLRFLCTREFQNSIKESFYAELKAAIASEP---WLEV----- 85
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
+ V + ++ R + I +EA +
Sbjct: 86 ---AYDVGVDYIRGRNGTEFLFKGLR----NNIQSVKSL--AKIDVCIVEEAEDISEAAW 136
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE- 267
+ + + + I + P +++ P E
Sbjct: 137 EVLEPTIRAPKSEIWVIWNPKQENSA-TDRRFRKNPPPRSCIMEMNYGDNPFFPPELEEL 195
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
+ LD G + +Q E A A G D
Sbjct: 196 RRHQQQTLDPARYAWIWEGAYYEQSEAQVF-RGKYEIAEFVPGENWDGA--YFGLDFGFS 252
Query: 328 GGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP-DAIIIDANNTGARTCDY 386
V ++ + ++ + L ++ A++ + Y
Sbjct: 253 QDPTAAVQCWIHDNKLYIEREAGGVGIELDDTAAVLQAAMPDIGRYVVRADSARPESISY 312
Query: 387 LEMLGYH--VYRVLGQKRAVDLEFC 409
L G V V G+ D
Sbjct: 313 LRRHGLPRIVGAVKGKGSVEDGIEF 337
>gi|270307731|ref|YP_003329789.1| hypothetical protein DhcVS_300 [Dehalococcoides sp. VS]
gi|270153623|gb|ACZ61461.1| hypothetical protein DhcVS_300 [Dehalococcoides sp. VS]
Length = 457
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 52/419 (12%), Positives = 111/419 (26%), Gaps = 75/419 (17%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGIS 109
R +Q + + V N ++ R GK L++ L L LM+ +
Sbjct: 6 RPYQQDIAKAVLQSIFNRQGQ------TFSVEIARQGGKNELSSQLELLLMTLFMFEPKN 59
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
++ A + + L+ ++++ + ++
Sbjct: 60 LVKCAPTFKPQLNISMMRLKDRLNEA------------GFTEIYHTEGGYIIRLNQARAV 107
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ NT + + DEA + + +
Sbjct: 108 FLSAEP-------SANVVGNTAHLLLEVDEAQDVSKEKYTKEFKPMGATTNVTTILYGTT 160
Query: 230 PRRLSGKFYEIFNKPLDDWK-----RFQIDTRTVEGIDPSFHEGI---IARYGLDSDVTR 281
S + K F+ D V +P++ R G + +
Sbjct: 161 WDNASLLEEIKRQNIEKEQKDGLKRHFRYDWEEVAAHNPAYLAYALSEKDRLGENHPLFL 220
Query: 282 VEVCGQFPQQDIDSFIP--LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD------NTV 333
+ F L++++ + + P+ + G D+A E G TV
Sbjct: 221 TQYRLLPVSGGGGMFSTEQLDLLKSSHPCQIYPENGKVYVAGLDLAGEDGQIDGDLPATV 280
Query: 334 VVLRRGPVIEHLF---------------------DWSKTDLRTTNNKISGLVEK-YRPDA 371
+ R V+ W K+ L+ K ++
Sbjct: 281 NLRRDSSVLTIAELDYTFAKAPCNLPQLKLVCHYSWQGARHALLYEKLVELLGKVWKCRK 340
Query: 372 IIIDANNTGARTCDYLEM-LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
+ +DA G +L LG + Q + ++ L + + L
Sbjct: 341 VAVDATGLGQPVASFLRESLGSRILPFAFQPSS---------KSRLGFNLLSAVNSGRL 390
>gi|75675353|ref|YP_317774.1| hypothetical protein Nwi_1160 [Nitrobacter winogradskyi Nb-255]
gi|74420223|gb|ABA04422.1| Protein of unknown function DUF264 [Nitrobacter winogradskyi
Nb-255]
Length = 422
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 52/408 (12%), Positives = 108/408 (26%), Gaps = 58/408 (14%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GRG GKT A V P + + +E + + VS L++
Sbjct: 40 GGRGAGKTRAGAEWVRAQALGLPPFAGEAVSRIALVGETEHDAREVMIEGVSGLLAVHAA 99
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ D +
Sbjct: 100 HERPSWSPSRKRLE------------------WSNGAVAQAFSADDPESLRGPQFGCAWS 141
Query: 198 DEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
DE + + + L + R I T+ R + + N P
Sbjct: 142 DEMAKWRYAEAAFDMLQFGLRLGSQPRQLITTTP--RPTALLKRLMNDPAS-VVTRAPTQ 198
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
+ P+F +G++ARY + + R E+ G+ + D+ ++E E P
Sbjct: 199 ANAFNLAPTFLQGVMARYA-GTRLGRQELDGEIIEDRPDALWSRALLERCRVSEAPPLQR 257
Query: 316 APLIMGCDIAEEGGDNTVVVLRRGP------VIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ + + + ++ G + + K L ++
Sbjct: 258 IVVAVDPPASVTRRADACGIVAAGQAADGTVYVIADETVAGVTPAQWAAKAIALWRRWEA 317
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLEFA 427
DA++ + N G + + V + + R E + + + A
Sbjct: 318 DALVAEVNQGGDMVKAVIAEVDASVPVIAVRATRGKW-----LRAEPVATLYEQGRVRHA 372
Query: 428 SLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ L + + + +S D D L++
Sbjct: 373 GSF--AALEDEMCDFALTGLSS-------------GRSPDRLDALVWA 405
>gi|284921902|emb|CBG34977.1| prophage terminase, large subunit [Escherichia coli 042]
Length = 553
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 47/450 (10%), Positives = 91/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + +
Sbjct: 41 DPEVVERFIAFSRVCPHVKGAMRGSPIELEP--WQQFAFACILGFKVKATGRRKYTSAFI 98
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
+ R K+T+ A L W + G I A ++ + +
Sbjct: 99 EVP--RKNAKSTVAAILANWFLVMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRK 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVIHPKTNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKP 244
+ I S + + I+ S + ++
Sbjct: 217 PEGLLFAITTSGSNV--------VSACKQHYDYCCQILDGEEVNESMFVLIYELDDESEV 268
Query: 245 LDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTR--VEVCGQFPQQDIDSFIPLNI 301
D + + +D I G+ S + + Q
Sbjct: 269 DDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMLTKRFNIWCQGATPWMGNGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV-------------------------- 335
E A G D++ ++V
Sbjct: 329 AECAGTFAEADLYGQECYAGLDLSSTSDISSVCYAFPVGKKIMLVSRHYLPEFQLQNPAN 388
Query: 336 -----LRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
R+ + D + I E + + D N L+
Sbjct: 389 KNRAIYRQWVKAGWIRTTPGDCIDYDRIRDDIMADAENFNIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRVL-----GQKRAVDLEFCRNRR 413
G+ V A E NR+
Sbjct: 448 GAGFEVEPFPQTYLRFSPAAKSFEVFVNRK 477
>gi|18496890|ref|NP_569740.1| putative terminase gp4 [Mycobacterium phage TM4]
gi|4336041|gb|AAD17572.1| putative terminase gp4 [Mycobacterium phage TM4]
Length = 474
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 54/390 (13%), Positives = 101/390 (25%), Gaps = 56/390 (14%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
WQ + + ++ A+S R GKT L LV L P +
Sbjct: 39 GFDLWQ----DDLGKLICAKRDDGLYAADMFAMSIPRQTGKTYLLGALVFALCIKTPNTT 94
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
VI A+ T MQ L+ + +
Sbjct: 95 VIWTAHRTRTAAETF----------------RSMQGLAKRDKIAPHILNVHTGNGKEAVL 138
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ G +I DEA + ++ T N ++
Sbjct: 139 FKNGSRILFGARERGFGRGFAGVDVLIFDEAQILTENAMDDMVPA-TNAAPNPLILLAGT 197
Query: 230 PRRLSGK------------------------FYEIFNKPLDDWKRFQIDTRTVEGIDPSF 265
P + + + P D + +++
Sbjct: 198 PPKPTDPGEVFTVMRLDALAGDVDDVGYVEISADEDADPDDRSQWRKMNPSYPHRTSARA 257
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQ-QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
+ G +S + E G +P+ + + + P D AP + D+
Sbjct: 258 ILRMRKALGDES--FKREAMGIWPKVSVHQPVVKSGRWHDLFDLGPE-DGEAPNALAVDM 314
Query: 325 AEE---GGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA 381
+ ++ G +E + W+ TD + I+ R ++ID+ + A
Sbjct: 315 SHGLAISVGACWLMDDDGRHVEEV--WAGTDTAAAVDWIAE--RAGRRIPVLIDSMSPAA 370
Query: 382 RTCDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
L+ V A N
Sbjct: 371 ALAPELKARKVKVKLTGAADMAKGCGLFEN 400
>gi|300724267|ref|YP_003713585.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
19061]
gi|297630802|emb|CBJ91471.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
19061]
Length = 553
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 46/452 (10%), Positives = 100/452 (22%), Gaps = 70/452 (15%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
++ E+ F F P WQ + + + +
Sbjct: 39 VFDSEVVARFIAFSRVCSHVKGHLRGQPIMLEP--WQQFAFANLFGFKVKATGR--RKYR 94
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL------ 132
I R K+T+ A L W + G I A ++ + +
Sbjct: 95 SAYIQVPRKNAKSTVAAILANWFLVMEQGQQDIYTAAVSRDQARIVFDDARQMSLLSKPL 154
Query: 133 --SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVG 186
++ +H + P + S + + + +G
Sbjct: 155 KKRVVIQQHKVTYPKTNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNAVYSALELGMG 214
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
+ I S + + I+ + S +
Sbjct: 215 ARPEGILFAITTAGSNV--------ISACKQHYDYCCQILDGEEQNESLFALIYELDDEN 266
Query: 247 DWKRFQIDTRTVEGID-----PSFHEGIIARYGLDS--DVTRVEVCGQFPQQDIDSFIPL 299
+ + + +D + H+ I G+ S + + Q +
Sbjct: 267 EIDDETLWIKANPNLDVSVDSAALHDTIQKARGIPSQWTEMLTKRFNIWCQGETPWMGEG 326
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV------------------------- 334
+ + G D++ G ++
Sbjct: 327 AWKACLSDYDENDLKGLECYAGLDLSSTGDITSICYTFSVDNELLVLTRHYLPEAQLQNP 386
Query: 335 ------VLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
V R+ + D + I +++ + D N
Sbjct: 387 ANKNRAVYRQWVQAGWIRTTQGDCIDYDRIRDDILNDSQQFDIKLVGFDTWNA-THLRTQ 445
Query: 387 LEMLGYHVYRVL-----GQKRAVDLEFCRNRR 413
L+ G V A E NR+
Sbjct: 446 LQGAGLDVEPFPQTYLRFSPVAKSAEVFVNRK 477
>gi|56560881|ref|YP_161301.1| hypothetical protein BGP016 [Borrelia garinii PBi]
gi|52696522|gb|AAU85866.1| hypothetical protein BGP016 [Borrelia garinii PBi]
Length = 396
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/396 (10%), Positives = 112/396 (28%), Gaps = 47/396 (11%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ P + RG GKT A + L + G + + + + ++
Sbjct: 8 IYVNAYKEKPNAEIFIYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKNKTTQSIH 67
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ + LS+ + +F + + SL K + ++
Sbjct: 68 KEILELLSIYGLRKFFNISKAKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYA 118
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
+ + +EA+ ++ + E+ + P+ + N+
Sbjct: 119 -----HFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLANQDN 173
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQFPQQDIDSFI-PLN 300
+ R ++ E + + Y + R+EV G+ I N
Sbjct: 174 PAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGEEFDFGTARLIKKFN 233
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI-EHLFDWSKTDLRTTNNK 359
+ E +L G I +++ R + + + + + +
Sbjct: 234 VCEPSLISR----ANGSYYTGVHIKGNRICFLEILVGRISYLPVVIVTNACSKVLLSKAD 289
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
+ ++ G +V+ G+ + + N
Sbjct: 290 YQAEINNFK-----------GTFVLPAAREELKYVFSRFGRGTLLAKKR--NL-----YS 331
Query: 420 MADW-----LEFASLINHSGLIQNLKSLKSFIVPNT 450
++D+ L ++ + +I + + ++
Sbjct: 332 LSDYLIPANLSVVNIPETNDVISEFNETEYYYDESS 367
>gi|320535831|ref|ZP_08035911.1| conserved domain protein [Treponema phagedenis F0421]
gi|320147321|gb|EFW38857.1| conserved domain protein [Treponema phagedenis F0421]
Length = 488
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 53/388 (13%), Positives = 99/388 (25%), Gaps = 79/388 (20%)
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
L + Y +T S G + DE + P+ I
Sbjct: 61 KKLRSCTKTAMEFYDKSGKTVSRLISIACRPPRGRGGDIVF-DEMAIYPENKAEVIYTAG 119
Query: 216 TERNANRFWIMTSN-PRRLSGKFYEIFNKPLD--DWKRFQIDTRTVEGIDPSFHEGIIAR 272
A + + P G+FY++F + R+ I + + E +
Sbjct: 120 IPVTARGGCVEIGSTPLGKIGRFYDVFIDKKKYRTYNRYTIPWWFSAALCTNVEEAVRNA 179
Query: 273 YGLDSDV---------------------TRVEVCGQFPQQDIDSFIPLNIIE------EA 305
+D++ + E F SFI L++I A
Sbjct: 180 PAMDTEERVYRYGTPPLIEAFEAMLLEDFQQEFECTFIDS-ALSFITLDLIYANTPGMRA 238
Query: 306 LNREPCP---------------------------------DPYAPLIMGCDIAEEGGDNT 332
+R + + L +G D+A
Sbjct: 239 EDRTEEIRGGNIEDADIEDEKDLEIKIFRTSDELCAGYSREEHGALYLGYDVARYRDAAV 298
Query: 333 VVV---LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ V + + ++I ++ + ID G T + L+
Sbjct: 299 IYVLGVVDGKKKCVAEIEMKNKKFEYQRDEIRKIMRQLPVVRGCIDRTGQGLDTTETLQK 358
Query: 390 LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS--LINHSGLIQNLKSLKSFIV 447
+ ++F + L + + LE L N + + S+K I
Sbjct: 359 EFGE-------SKLEGIDFTTPAKEVLAMGVRTGLEKREFLLPNDQKFRKQIHSIKR-IP 410
Query: 448 PNTGELAIESKRVKGAKSTDYSDGLMYT 475
G +S R K D
Sbjct: 411 SAGGSFRYDSTRDKDG-HADSFWAFALA 437
>gi|37527280|ref|NP_930624.1| hypothetical protein plu3406 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36786714|emb|CAE15780.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 418
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/256 (12%), Positives = 70/256 (27%), Gaps = 27/256 (10%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ A L L+ ++++C + + ++ A + + L H+
Sbjct: 28 GGRGGGKSVEIAR-ALVLLGAIEPMTILCAREFQNSINDSVLALLEAQIIDLGLSHF--- 83
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ ++ R + H +EA
Sbjct: 84 ---------YKVKNNEIEGQNGTRFTFKGLR----NNIQSIKSMHG--IKICWVEEAQTV 128
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK-----RFQIDTRTV 258
+ + N + W+ NPR Y++ + +D +++
Sbjct: 129 SQDSWDILGPTVR-ANKSEVWVSF-NPREEEDPTYKLMTRHQEDPSDGGVIIRKVNYCDN 186
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ + +D + G EA + E + L
Sbjct: 187 AFFPDVLRQEMEYCKRIDYEAYEHIWLGLPKALSEAVIFSGKYRVEAFSDELWLEADR-L 245
Query: 319 IMGCDIAEEGGDNTVV 334
G D +T+V
Sbjct: 246 FYGADFGFANDPSTLV 261
>gi|170683362|ref|YP_001743036.1| putative phage terminase, large subunit [Escherichia coli SMS-3-5]
gi|170521080|gb|ACB19258.1| putative phage terminase, large subunit [Escherichia coli SMS-3-5]
gi|323977725|gb|EGB72811.1| phage Terminase [Escherichia coli TW10509]
Length = 553
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 47/450 (10%), Positives = 91/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + +
Sbjct: 41 DPEVVERFIAFSRVCPHVKGAMRGSPIELEP--WQQFAFACILGFKVKATGRRKYTSAFI 98
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
+ R K+T+ A L W + G I A ++ + +
Sbjct: 99 EVP--RKNAKSTVAAILANWFLVMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRK 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVIHPKTNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKP 244
+ I S + + I+ S + ++
Sbjct: 217 PEGLLFAITTSGSNV--------VSACKQHYDYCCQILDGEEVNESMFVLIYELDDESEV 268
Query: 245 LDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTR--VEVCGQFPQQDIDSFIPLNI 301
D + + +D I G+ S + + Q
Sbjct: 269 DDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMLTKRFNIWCQGATPWMGNGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV-------------------------- 335
E A G D++ ++V
Sbjct: 329 AECAGTFAEADLYGQECYAGLDLSSTSDISSVCYAFPVGKKIMLVSRHYLPEFQLQNPAN 388
Query: 336 -----LRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
R+ + D + I E + + D N L+
Sbjct: 389 KNRAIYRQWAKAGWIRTTPGDCIDYDRIRDDIMADAENFNIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRVL-----GQKRAVDLEFCRNRR 413
G+ V A E NR+
Sbjct: 448 GAGFEVEPFPQTYLRFSPAAKSFEVFVNRK 477
>gi|56560985|ref|YP_161401.1| hypothetical protein BGP116 [Borrelia garinii PBi]
gi|52696625|gb|AAU85966.1| hypothetical protein BGP116 [Borrelia garinii PBi]
Length = 336
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/237 (12%), Positives = 69/237 (29%), Gaps = 18/237 (7%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ P + RG GKT A + L + G + + + + ++
Sbjct: 8 IYVNAYKEKPNAEIFIYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKNKTTQSIH 67
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ + LS+ + +F + + SL K + ++
Sbjct: 68 KEILELLSIYSLRKFFNISKAKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYT 118
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
+ + +EA+ ++ + E+ + P+ + N+
Sbjct: 119 -----HFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLANQDN 173
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ R ++ E + + Y + R+EV G+ I
Sbjct: 174 PAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGEEFDFGTARLIK 230
>gi|329847806|ref|ZP_08262834.1| terminase-like family protein [Asticcacaulis biprosthecum C19]
gi|328842869|gb|EGF92438.1| terminase-like family protein [Asticcacaulis biprosthecum C19]
Length = 492
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 51/441 (11%), Positives = 98/441 (22%), Gaps = 55/441 (12%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ + I R IG + W ++ + A +
Sbjct: 30 NILLGYQGRAIKAVTQFALTVIEKSRRIG--------LTWGLAF----QAVLTAARKGYA 77
Query: 121 KTTLWAE--VSKWLSLLPNK--HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+W + W + + ++ +
Sbjct: 78 GRKVWYMGFEKDMTREFIDACAMWAKAMNFAIEDSGEVVLEDEEKHVTAFVITFPSGNKI 137
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP-RRLSG 235
+ P G II++ A + L LT + T N
Sbjct: 138 TAL-PAVARAWRGKKGFVIIDESAFMSNLEEVLKAALALTMWGDKVVVVSTHNGIDNPFN 196
Query: 236 KFYEIFNKPLDDWKRFQIDTRTV------------EGIDPSFHEGIIARYGLDSDVTRVE 283
K + + + I P E A D E
Sbjct: 197 KLIQEIRAKKREGEVITITLADALADGLYERIKLLNPDIPDKAEWERALRARYGDNAAEE 256
Query: 284 VCGQFPQQDIDSFIPLNI--IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR--- 338
+ +I E A +P +G DIA V+ +
Sbjct: 257 LDCIPKVGGGSWLKAEDITKCEHADAGKPELYQGGLCYIGRDIAR-RRHWAVIWVFELVG 315
Query: 339 -GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY-LEMLGYHVYR 396
+ ++ ++ +YR ID G + + G V
Sbjct: 316 NILWLRERWEKIGATFAEQEEAFDDMMHRYRIAEADIDQTGMGEAVVEAAITKHGPRVKG 375
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMADWLEFA--SLINHSGLIQNLKSLKSFIVPNTGELA 454
VL R + +A+ + + + +L+ +K N +
Sbjct: 376 VLFAPGT---------RLTMATLLAERFQNGTIRIPYDDEIRVDLRGIKQ--ASNDNKAL 424
Query: 455 IESKRVKGAKSTDYSDGLMYT 475
E+ V D
Sbjct: 425 AEAADV----HPDRFWAAGLA 441
>gi|291085165|ref|ZP_06570960.1| terminase, ATPase subunit [Citrobacter youngae ATCC 29220]
gi|291072160|gb|EFE10269.1| terminase, ATPase subunit [Citrobacter youngae ATCC 29220]
Length = 88
Score = 57.2 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 412 RRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDY 468
+T + +K D + L + + Q+ +++ + + E+ R + A D
Sbjct: 1 MKTPMVLKAKDTIRHGCLKYDAGATDITQSFMAIRKTMTSSGRSSTYEASRSEEASHADI 60
Query: 469 SDGLMYTFAENPPRS 483
+ M+ P +
Sbjct: 61 AWATMHALLNEPLSA 75
>gi|219872329|ref|YP_002476730.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
gi|219694371|gb|ACL34896.1| phage terminase, large subunit, pbsx family [Borrelia garinii PBr]
Length = 396
Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/295 (10%), Positives = 86/295 (29%), Gaps = 22/295 (7%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L G + + + + ++ E+ + L++ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFNPDGGDTLAIRKKKNKTTQSIHKEICELLNIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ SL K + ++ + + +EA+
Sbjct: 86 SKSKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYA-----HFKDLWLEEANQF 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID- 262
++ + E+ + P+ + N+ + R ++
Sbjct: 132 TSEDIEMLIPTMREQGGRVYMSSNPVPKSHWLYKRYLSNEDNPAVCIIKSTYRDNPFLNG 191
Query: 263 ---PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
++ E Y + R+EV G+ I + +
Sbjct: 192 GNVQAWLEKQKLAYHGNDIGFRIEVLGEEFDFGTARLIKEFKV---CDPNIISKVNGSYY 248
Query: 320 MGCDIAEEGGDNTVVVLRRGPVI-EHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
G + +++ R + + + + + + ++ ++ I+
Sbjct: 249 TGIHVKGNRICFLEILVGRISYLPVVIITNACSKVLLSKTDYQNEIDNFKGTFIL 303
>gi|253999341|ref|YP_003051404.1| hypothetical protein Msip34_1632 [Methylovorus sp. SIP3-4]
gi|253986020|gb|ACT50877.1| protein of unknown function DUF264 [Methylovorus sp. SIP3-4]
Length = 428
Score = 56.8 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 54/441 (12%), Positives = 113/441 (25%), Gaps = 59/441 (13%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A+ +G G GK+ + P I A + Q++ + +
Sbjct: 21 AMVSGFGTGKSWGGCADLCKHAWEFPRIHSGYFAPTFGQIRDIFYPTI------------ 68
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH-NTYGMAIINDE 199
E + + + Y S + P VG + ++
Sbjct: 69 -EEVAFDWGMRSKVNSSNKEVHLFAGRVYRGTIICRSMDDPSQIVGFKIGKALIDELDIL 127
Query: 200 ASGTPDVINLGILGFLT--ERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRF 251
A + I+ + N +T+ P + + + + +
Sbjct: 128 AKEKAQLAWRKIIARMRYKVDNLQNGVGVTTTPEGFKFVYDQFVKQVREKPELASLYGLI 187
Query: 252 QIDTRTV-EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
T + + + + A Y + + G+F + S N + + +
Sbjct: 188 HASTYDNAKNLPEDYIPSLRASY--PPQLIEAYLRGKFVNLNSGSVY-ANFDRKKNHTDA 244
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
P L +G D T+ V+R G ++ D T I +YR +
Sbjct: 245 VMKPGEALHIGMDFNVMNMTATINVMRDGLPLQVAELTGVRDTPTMAQIIHD---RYRGN 301
Query: 371 AIII----DANNTGART-------CDYLEMLGYHVYRVLGQKRAVDL-----EFCRNRRT 414
+I DA+ + L + + D N +
Sbjct: 302 HNVIQIYPDASGKNTSSKNASESDLTILRRKEFSIMVNDSNPAVKDRVNAYHAMILNDKG 361
Query: 415 ELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
E + + + L+ G E + G + ++G
Sbjct: 362 ER----RFRINTHNCP---VTTEALEQQP---YDKNG----EPDKKSGHDHPNDAEGYFI 407
Query: 475 TFAENPPRSDMDFGRCPSYQY 495
+ M S
Sbjct: 408 VKRYPIVKPAMSINLKASSNA 428
>gi|300724761|ref|YP_003714086.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
19061]
gi|297631303|emb|CBJ91998.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
19061]
Length = 553
Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/381 (10%), Positives = 86/381 (22%), Gaps = 34/381 (8%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E+ F F P WQ + + + +
Sbjct: 41 DTEVVERFIAFSRLCPHVKGHLRGKPIILEP--WQQFAFANLFGFKIKATGR--RKYRSA 96
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL----- 135
I R K+T+ A L W + G I A ++ + + L
Sbjct: 97 YIQVPRKNAKSTVAAILANWFLVMEQGQQDIYTAAVSRDQARIVFDDARQMSLLSKPLKK 156
Query: 136 ---PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+H + P + S + + + +G
Sbjct: 157 RVTIQQHKVTYPKTNSLLKPLAAKAATIEGTNPSLAVVDEYHLHPDNAVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ I S + + I+ S S ++
Sbjct: 217 PEGILFAITTAGSNV--------ISACKQHYDYCCQILNSEEHNASLFALIYELDDENEI 268
Query: 249 KRFQIDTRTVEGI-----DPSFHEGIIARYGLDS--DVTRVEVCGQFPQQDIDSFIPLNI 301
+ + + + H+ I G+ S + + Q +
Sbjct: 269 DDESLWIKANPNLNVSVDSDALHDTIQKARGIPSQWTEMLTKRFNIWCQGETPWMGEGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV---LRRGPVIEHLFDWSKTDLRTTNN 358
+ E G D++ G +V + ++ + L+ N
Sbjct: 329 KACQTDYEENDLKGLECYAGLDLSSTGDITSVCYTFPVDNELLLLTRHYLPEAQLQNPAN 388
Query: 359 KISGLVEKYRPDAIIIDANNT 379
K + ++ I
Sbjct: 389 KNRAVYRQWAQAGWIRITTGD 409
>gi|32469469|ref|NP_862877.1| gp38 [Streptococcus phage SM1]
gi|32441621|gb|AAP81920.1| gp38 [Streptococcus phage SM1]
Length = 459
Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 45/347 (12%), Positives = 89/347 (25%), Gaps = 49/347 (14%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ + + A N + + R GK+ L +W + G++++
Sbjct: 43 WQKNLLLPMMAVDKNGLWVHQKFGYSI----PRRNGKSELLYIGEIWGL--HEGLNILHT 96
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A+ + + +V ++L + + L
Sbjct: 97 AHRISTSH-ASFEKVKRYLEKM------GYVDGEDFNSIRAKGQERIELYSTGGVIQFRT 149
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE-RNANRFWIMTSNPRR 232
RT + + F +I DEA + +T+ N T
Sbjct: 150 RTSNGGLGEGFD--------MLIIDEAQEYTTEQESALKYTVTDSENPITIMCGTPPTPV 201
Query: 233 LSGKFYEIFNK-------PLDDWKRFQID----------TRTVEGIDPSFHEG--IIARY 273
SG + + + W + + I A
Sbjct: 202 SSGTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAEL 261
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D ++ G +P + S I E ++ P + I
Sbjct: 262 GEDKLDHNIQRLGFWPTYNQKSAISETEWNELKMDDIPELSGK----LSVGIKYGQDGTN 317
Query: 333 V---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + R + +R N + + + I+ID
Sbjct: 318 VAMSIAARTNDGRFFVETVDCQSVRNGNEWMVAFLRQADVAQIVIDG 364
>gi|146277121|ref|YP_001167280.1| hypothetical protein Rsph17025_1074 [Rhodobacter sphaeroides ATCC
17025]
gi|145555362|gb|ABP69975.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC
17025]
Length = 414
Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 51/422 (12%), Positives = 101/422 (23%), Gaps = 71/422 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGIS---------VICLANSETQLKTTLWAEVSKWL 132
+ GRG GKT A W+ S G V + + Q + + S L
Sbjct: 22 VMGGRGAGKTRAGAE---WVRSEVEGPRPGDPGRSRHVALVGETVDQTREVMVFGESGLL 78
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ P E ++
Sbjct: 79 ACSPPDRRPEWEAGRKRL------------------VWPNGAVAQVFSAHDPESLRGPQF 120
Query: 193 MAIINDEASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
A DE + + + R ++T+ PR +
Sbjct: 121 DAAWADELAKWARAEEAWDMLQFSLRLGDQPRQVVTTTPRNV--PVLRQILDNPSTVVTH 178
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ SF + + ARY + + R E+ G + + + R
Sbjct: 179 APTEANRAYLAKSFLDEVHARYD-GTRLGRQELEGLLLEDVEGALWTT--VRIEALRAEE 235
Query: 312 PDPYAPLIMGCDI---AEEGGDNTVVVLR----RGP------VIEHLFDWSKTDLRTTNN 358
P +++ D E D +V+ GP V+
Sbjct: 236 AGPLDRIVVAVDPPVTGHEASDECGIVVVGARTDGPPQDWQAVVLEDASVGAASPDRWAR 295
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
+ ++ D ++ + N G + + V R E
Sbjct: 296 AALDALHRHGADRLVAEVNQGGDLVETVIRQIDPLVPFRAVHASRGKAA-----RAEPVA 350
Query: 419 KMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
+ + + + +++ + G S D D L++
Sbjct: 351 ALYEQGRVRHLRGLGDLEDQMCRMTVRGYD---------------GRGSPDRLDALVWAL 395
Query: 477 AE 478
+
Sbjct: 396 TD 397
>gi|45597419|ref|NP_996704.1| TerL [Lactococcus phage phiLC3]
gi|45504639|gb|AAS66808.1| large subunit terminase [Lactococcus phage phiLC3]
Length = 469
Score = 56.8 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 45/347 (12%), Positives = 89/347 (25%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ ++ + A + + + R GKT + L LW + G+S++
Sbjct: 41 PWQKNLLKEIMAIDEDGLWTHQKFGYSI----PRRNGKTEIVYILELWAL--EQGLSILH 94
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + ++ + ++ K+L + L
Sbjct: 95 TAHRISTSHSS-YEKLKKYLEDS------GYVEGEDFKSIKAKGQERLELIESGGVIQFR 147
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR- 231
RT S + F + DEA + +T+ + + + P
Sbjct: 148 TRTSSGGLGEGFD--------ILFIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTP 199
Query: 232 -------------------RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
+ SG D I A
Sbjct: 200 VSSGTVFTNYRDNTLAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEAE 259
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D V+ G +P+ + S I + I
Sbjct: 260 LGEDKLDHNVQRLGYWPKYNQKSVISEQEWNALKVNRLPVIKGK---LFVGIKYGNDGAN 316
Query: 333 V---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + ++ + +R N I ++K + ++ID
Sbjct: 317 VAMSIAVKTLSGKVFVETIDCQSIRNGNQWIINFLKKADVEKVVIDG 363
>gi|326339403|gb|EGD63215.1| Phage terminase large subunit [Escherichia coli O157:H7 str. 1044]
Length = 492
Score = 56.8 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 46/419 (10%), Positives = 87/419 (20%), Gaps = 68/419 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + + + R K+T A L W + G I
Sbjct: 9 EPWQQFAFACILGFKVKATGRRKYTSAFIEVP--RKNAKSTTAAILANWFLIMENGQQDI 66
Query: 112 CLANSETQLKTTLWAEVSKWL--------SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
A ++ + + + H + P +
Sbjct: 67 YTAAVSRDQARIVFDDARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGT 126
Query: 164 IDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
S + + + +G + I S + +
Sbjct: 127 TPSLAIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNV--------VSACKQHY 178
Query: 220 ANRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYG 274
I+ S + ++ D + + +D I G
Sbjct: 179 DYCCQILDGEEVNESMFVLIYELDDESEVDDPAMWIKANPNIDVSVDREKLASTIQKARG 238
Query: 275 LDSD--VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
+ S + + Q E A G D++ ++
Sbjct: 239 IPSQWVEMMTKRFNIWCQGATPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISS 298
Query: 333 VV-------------------------------VLRRGPVIEHLFDWSK--TDLRTTNNK 359
V V R+ + D +
Sbjct: 299 VCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYRQWAKAGWIRTTPGDCIDYDRIRDD 358
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL-----GQKRAVDLEFCRNRR 413
I EK+ + D N L+ G+ V A E NRR
Sbjct: 359 IMQDAEKFHIRLVGFDTWNA-THLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRR 416
>gi|219048282|ref|YP_002455497.1| PbsX family phage terminase large subunit [Borrelia afzelii ACA-1]
gi|216752464|gb|ACJ73223.1| phage terminase, large subunit, pbsx family protein [Borrelia
afzelii ACA-1]
Length = 396
Score = 56.8 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/396 (10%), Positives = 112/396 (28%), Gaps = 47/396 (11%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ P + RG GKT A + L + G + + + + ++
Sbjct: 8 IYVNAYKEKPNAEIFIYYSSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKNKTTQSIH 67
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
E+ + LS+ + +F + + SL K + ++
Sbjct: 68 KEILELLSIYGLRKFFNISKAKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYA 118
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
+ + +EA+ ++ + E+ + P+ + N+
Sbjct: 119 -----HFKDLWLEEANQFSSDDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLANEDN 173
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQFPQQDIDSFI-PLN 300
+ R ++ E + + Y + R+EV G+ I N
Sbjct: 174 PAVCIIKSTYRDNPFLNGGDVEAWLEKQKLAYHGNDIGFRIEVLGEEFDFGTARLIKKFN 233
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI-EHLFDWSKTDLRTTNNK 359
+ E +L G I +++ R + + + + + +
Sbjct: 234 VCEPSLISR----ANGSYYTGVHIKGNRICFLEILVGRISYLPVVIVTNACSKVLLSKAD 289
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
+ ++ G +V+ G+ + + N
Sbjct: 290 YQAEINNFK-----------GTFVLPAAREELKYVFSRFGRGTLLAKKR--NL-----YS 331
Query: 420 MADW-----LEFASLINHSGLIQNLKSLKSFIVPNT 450
++D+ L ++ + +I + + ++
Sbjct: 332 LSDYLIPANLSVVNIPETNDVISEFNETEYYYDESS 367
>gi|217961374|ref|YP_002339942.1| putative phage terminase, large subunit [Bacillus cereus AH187]
gi|229140602|ref|ZP_04269157.1| Phage terminase, large subunit [Bacillus cereus BDRD-ST26]
gi|217066611|gb|ACJ80861.1| putative phage terminase, large subunit [Bacillus cereus AH187]
gi|228643163|gb|EEK99439.1| Phage terminase, large subunit [Bacillus cereus BDRD-ST26]
Length = 571
Score = 56.8 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/391 (10%), Positives = 108/391 (27%), Gaps = 56/391 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISV 110
+Q + + GR GK+ +N L + + V
Sbjct: 75 EFQAFIFGSLHGWVHKETG--YRRFRSSYVQVGRQNGKSMMNGVLGTYYSNFDGYNYAQV 132
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
C A + Q + E+ K++ ++ E + + + +
Sbjct: 133 YCTATKQDQA-NIVLKEMIKFIET--DEDLSECFKVKEY-------KNTIEALVTNGVVR 182
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSN 229
+ R ++ G + I DE P + + + G T+ ++T+
Sbjct: 183 ALGR-----DTESIDGFRS---YLGIVDEYHKHPTNQMYKLLEGGTTKLKECLISVITTA 234
Query: 230 PRRLSGKFYEIFNK---------------------PLDDWKRFQIDTRTVEGIDPSFHEG 268
L+ YE++ DD + + EG
Sbjct: 235 GFDLNSPCYELYEDCCRLLEGVYEDEKQFVYIAQLDKDDDIWDSSNWIKANPLVARDEEG 294
Query: 269 I----------IARYGLDSDVTRVEVCGQFPQQDIDSFIPLN-IIEEALNREPCPDPYAP 317
I R G + + + Q + ++ + + A + +
Sbjct: 295 IETLETMASAAKRRGGSELRNFLTKHLNIWVQFTDNQYMNMEHWKKCASDLDLEDFRGKE 354
Query: 318 LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+G D++ G ++ + E + + N+++ ++ I +
Sbjct: 355 CYIGLDLSSGGDLTSLGAVFPYLKEEEKNYFVHSHSFIPKNRVAEHIKTDNAPYDIWVRD 414
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEF 408
+ L + ++ + + ++
Sbjct: 415 GL-LTVTETLGGIKTDYKYIIAYLKRIVEDY 444
>gi|325107749|ref|YP_004268817.1| phage terminase-like protein protein large subunit-like protein
[Planctomyces brasiliensis DSM 5305]
gi|324968017|gb|ADY58795.1| phage terminase-like protein protein large subunit-like protein
[Planctomyces brasiliensis DSM 5305]
Length = 442
Score = 56.8 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 63/414 (15%), Positives = 113/414 (27%), Gaps = 49/414 (11%)
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-GISVICLANSETQLK 121
A + + P + + RG KTT A +LW++ P + + A Q
Sbjct: 9 PAWRALASQSIEPPFQRAYLERPRGHSKTTDTAVQLLWILQNSPTRVEGLAAAADLEQGL 68
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
+ + + + L ++ L + S +
Sbjct: 69 -----LIRNAMQRISEVNGDLCGQLVFRQQFVQNEATGSRLTV-----------ISSDVQ 112
Query: 182 DTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
++ +I DE S PD+ I + ++ +N G +E
Sbjct: 113 SSWGAL----PDFVICDELSHWEKPDLWYSLISSAAKK--PRCLVVVLTNAGVGRGWQFE 166
Query: 240 IFN--KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
+ + D W +D I + E L + V ++ QQ SF+
Sbjct: 167 VREAARKSDRWYFASLDGCQAPWIAADWLEEQRQL--LPAPVFDRLWNNRW-QQSDGSFV 223
Query: 298 PLNIIEEALNREPCPD----PYAPLIMGCDIAEEGGDNTVVVL-RRGPVIEHLFDWSKTD 352
L E + P D AE+ VVL R G +
Sbjct: 224 SLAEAEACRDEGLNYQEEGRPGRRYFAAIDYAEKRDYTVGVVLHRDGTRLVVDRMDVVCP 283
Query: 353 LRT-------TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+ + + + ++D T LE V R +
Sbjct: 284 TADAPVPVQWVEDWMLAIGGAFPGTQFVVDEYQL-LSTIQKLEGR-LRVKRFPFLGGQGN 341
Query: 406 LEFCRNRRTELHVKMADWLEFASLINH----SGLIQNLKSLKSFIVPNTGELAI 455
N RT + + W + L L S+ + G + I
Sbjct: 342 HALAMNLRTLILQQGIAWYAGCGQLPLSSARDDLESELASVLLRQ-SSGGRIRI 394
>gi|227498429|ref|ZP_03928575.1| phage terminase large subunit [Acidaminococcus sp. D21]
gi|226903887|gb|EEH89805.1| phage terminase large subunit [Acidaminococcus sp. D21]
Length = 418
Score = 56.5 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/280 (13%), Positives = 72/280 (25%), Gaps = 19/280 (6%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
+ GRG K++ + LM P + L +K +++ ++ L L F+
Sbjct: 31 AGGRGSTKSSFVGMEIPLLMLQHPDCHAVVLRKVGGTIKNSVYPQIQWGLEQLQVLDRFK 90
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + LG D + Y + +E
Sbjct: 91 YKMTPPEMTLERTGQKILFLGCDDPMKVKSIK------------LPFGYVGIVWLEELDQ 138
Query: 203 TP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE- 259
+ I L + + P+ S E D + V
Sbjct: 139 FSGMEEIRNLCQSLLRGGPQYWVFCTYNPPKSRSSWVNEEILVDDPDRMVHRSTYLQVPQ 198
Query: 260 -GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ F + + R E G+ F +E+ E +
Sbjct: 199 KWLGEQFLQEAEKLKERNEMAYRHEYLGEVTGTGGAVF---ENVEDLPLTEEALGQFDHR 255
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNN 358
+ G D V + E L+ W + + N
Sbjct: 256 LFGLDFGFAVDPLAFVAMHYDAKHEDLYIWGEIYEQKLTN 295
>gi|262040826|ref|ZP_06014054.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041848|gb|EEW42891.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 434
Score = 56.5 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 57/356 (16%), Positives = 92/356 (25%), Gaps = 41/356 (11%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + M P I+ A + Q++ + V +
Sbjct: 23 AYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQIRDIFYPTVEEVAHD------ 76
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-- 198
++ + Y S E+P T VG + D
Sbjct: 77 -------WGLNVKINEGNKEVHFYAGRQYRGTTICRSMEKPQTIVGFKIGNALIDELDVM 129
Query: 199 EASGTPDVINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRF 251
A I +T+ P + + D +
Sbjct: 130 PAKKAQLAWRKIIARMRYKVPGLRNGIDVTTTPEGFKFVYQQFAKAVRDKPSLSTLYGLV 189
Query: 252 QIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T E + + ++ Y ++ + + GQF + I + N
Sbjct: 190 QASTFDNEKNLPADYIPSLMESY--PPELIKAYLRGQFTNLTSGT-IYHQFDRQLNNCHE 246
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL------- 363
P PL +G D V VLR G D I
Sbjct: 247 EEQPGEPLYIGMDFNVGKMAGIVHVLRFGLPCAVTEIIKAYDTPDIIRIIKERFWLYDGH 306
Query: 364 -VEKYRPDAIIIDANNTGARTCD-------YLEMLGYHVYRVLGQKRAVDLEFCRN 411
K R I DA+ ++ L+ G++V D N
Sbjct: 307 DYRKVREIYIYPDASGDSRKSAHASTTDIAQLKQAGFNVIVNDSNPPVKDRINSMN 362
>gi|293396801|ref|ZP_06641076.1| prophage LambdaSa04 protein [Serratia odorifera DSM 4582]
gi|291420708|gb|EFE93962.1| prophage LambdaSa04 protein [Serratia odorifera DSM 4582]
Length = 669
Score = 56.5 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/340 (13%), Positives = 91/340 (26%), Gaps = 57/340 (16%)
Query: 27 SFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLNSVNNPNPEVFKGAIS 83
+ V+ FF K E AP WQ + + + + +
Sbjct: 149 DAVSRVIDFFAKVLKLNGGEHEGAPFILLPWQAFVVGSIFGWKRANGSR---RFRTAYVE 205
Query: 84 AGRGIGKTTLNAWLVLW--LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+G+G GK+ L+A + L+ + P V A + Q L+ + ++ P
Sbjct: 206 SGKGSGKSPLSAGIGLYCLMADKEPRAEVYAAATKKDQAM-ILFRDAVAMVNQSPA---- 260
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF-VGHHNTYGMAIINDEA 200
S + S G + +T S RP + G + DE
Sbjct: 261 ------------LSQRIDPSGGAGKEWNLAFLQTGSFFRPISSDDGQSGPRPHCALIDEV 308
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIFNK---------------- 243
D + ++ T+ M +N + YE
Sbjct: 309 HEHKDNKAVEMMRAGTKGRRQALIFMITNSGHDKTSVCYEYHQYGKQLAAGQKTNDAFFA 368
Query: 244 -----------PLDDWKRFQIDTRTVEGIDPSFH-EGIIARYGLDSDVTRVEVC--GQFP 289
D+ + + P + E + G+ S + V ++
Sbjct: 369 FICSLDEGDDPFKDESCWAKANPSMGHTFQPEYLREQVEDARGMPSKESLVRRLNFCEWV 428
Query: 290 QQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + + G D++ +
Sbjct: 429 DAENPWIGGDVWMACEKTFDIAELQGRMCYGGLDLSGKRD 468
>gi|237745263|ref|ZP_04575744.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|229432492|gb|EEO42704.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
Length = 425
Score = 56.5 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/268 (14%), Positives = 78/268 (29%), Gaps = 26/268 (9%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
K GRG K++ A ++ + P I+++C+ LK +++ ++ + L +
Sbjct: 35 KIVCKGGRGSAKSSNIALMLTLDLIRNP-INIVCIRKVGETLKKSVYEQIKWAIKQLGVE 93
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+FE + L +G+D S S + +
Sbjct: 94 DYFEYKLSPLEIRYTERGNKFIFMGVDDPQKSKSIVDSSFPITE------------YWFE 141
Query: 199 EASGTPDV------INLGILGFLTERNANRFWIMTSNP---RRLSGKFYEIFNKPLDDWK 249
E + + ++ G L + + + + P K YE K D+
Sbjct: 142 ELAEFKNEDEVEMVLDSIYRGKLKDNLRYKGFFSYNPPKMKHNWVNKKYEYTFKEDDEIF 201
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
I F + A + + G+ + +P + +E
Sbjct: 202 VHHSTYLDNPFISDDFVKRAEAVKLNNPMKYKHTYLGEPI---GNGIVPFDNLEIRTISN 258
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
G D G D V
Sbjct: 259 EEIKGLDRFRNGVDWG-YGVDPMAFVRW 285
>gi|254688870|ref|ZP_05152124.1| Phage DNA packaging protein [Brucella abortus bv. 6 str. 870]
Length = 407
Score = 56.5 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/416 (12%), Positives = 105/416 (25%), Gaps = 69/416 (16%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + P + + + + + S LS+
Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
V + + + A
Sbjct: 87 RL-------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAA 127
Query: 196 INDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + P + L + R + T+ + +
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMR 184
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ F + I RY + + R E+ G+ ++ + + IE+ P
Sbjct: 185 TAENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVLR-----RGPVIEHLFDWSKTDLRTTNNKISGLVE 365
P A +++ D + + D +V+ + + + L
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKRHQWARRAIALYH 301
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--W 423
+ DAI+ + N G V KR R E + +
Sbjct: 302 THEADAIVAEVNQGGEMVAAED-------PSVPVLKRRASRGKW--LRAEPVAALYEQGR 352
Query: 424 LEF-ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ +++ G + S +S D D L++ E
Sbjct: 353 VRHAGRFPA----LEDEMC----DFAPEG---LSS-----GRSPDRLDALVWALGE 392
>gi|319407675|emb|CBI81323.1| phage-related protein [Bartonella sp. 1-1C]
Length = 442
Score = 56.5 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/350 (12%), Positives = 88/350 (25%), Gaps = 36/350 (10%)
Query: 84 AGRGIGKTT----LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT + A + ++C + L + E+ + +
Sbjct: 27 GGRGSGKTRSFALMTAVIGYRYGKAGERGIILCARQFQNSLAESSLEEIKRAIE------ 80
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
S S + + Y+ + + + DE
Sbjct: 81 -----SYSFLSDYYEIGDKYIRSKDGYIVYAFAGLDRNIASVKSMGRI-----LLCWVDE 130
Query: 200 ASGTPDVINLGILGFLTERNANRF---WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
A D ++ L E W+ + R + + K +I+ R
Sbjct: 131 AEPVTDAAWQILIPTLREEGKEWHSELWVTWNPCRENAAVEKRFRFTEDPNIKGVEINWR 190
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ A + + G++ Q ++ ++E P
Sbjct: 191 DNPKFPAKLNRDRKADLEQRPEQYQHIWEGEYLQAMQGAYYQKLLLEAEQEGRITIVPRD 250
Query: 317 PLI-----MGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
PLI D T + + + G I L + + + + Y
Sbjct: 251 PLIQVKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIGWVCQKGYEK 310
Query: 370 DAIIIDANNTGARTC------DYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+++ + L+ G+ + Q R
Sbjct: 311 ALMVLPHDGATKDRVYNVSFESALQQAGFRTQVIPNQGVGAVKMRIEAVR 360
>gi|190150084|ref|YP_001968609.1| terminase large subunit [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|307263417|ref|ZP_07545033.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189915215|gb|ACE61467.1| Putative terminase large subunit [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306871295|gb|EFN03023.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 556
Score = 56.5 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/426 (10%), Positives = 93/426 (21%), Gaps = 45/426 (10%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+ EI F F + WQ+ + + +
Sbjct: 39 YFDSEIVERFLKFSKVCPHVKGHLRGKAIELS--DWQVFLFANILGFKYRATG--LRKYR 94
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL------ 132
I R K+T+ A L W + G I A ++ + +
Sbjct: 95 SAYIQVARKNAKSTVAAVLANWFLVMEKGQQDIYTAAVSRDQARIVFDDARQMAVLSKPL 154
Query: 133 --SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVG 186
+ +H + P + S + + + G
Sbjct: 155 KKRVQIQQHKMIYPQNNSLMRPLAAKSSTIEGTNPSLAIVDEYHLHPDNSVYSALELGQG 214
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY----EIFN 242
+ I S + + I+ N + S + N
Sbjct: 215 ARPEGLLFAITTAGSN--------TISACKQHYDYCCQILDGNEQNESIFIMIFELDDEN 266
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEG-IIARYGLDSDVTR--VEVCGQFPQQDIDSFIPL 299
+ D + + + + I E I G+ S+ + +
Sbjct: 267 EVDDPSQWIKANPNIGKSIPFQDFENTIAKARGIPSEWVEMLTKRFNVWCNGSTPWLGEG 326
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV--------LRRGPVIEHLFDWSKT 351
N + MG D++ ++ +R +
Sbjct: 327 NWKACERIYQETDLHGKECYMGLDLSSTNDLTSICYVFPMPTGKVRTITRHYIPEYQLQN 386
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG-YHVYRVLGQKRAVDLEFCR 410
D + D L+ G +++ +
Sbjct: 387 VANKNRAIYRQWERMGWLRVTGGDCIDYDRIRDDILKDSGIFNIKMIGFDVWNATH---- 442
Query: 411 NRRTEL 416
RT+L
Sbjct: 443 -LRTQL 447
>gi|224797098|ref|YP_002642985.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
gi|224554508|gb|ACN55891.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
CA-11.2a]
Length = 396
Score = 56.5 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 67/219 (30%), Gaps = 18/219 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIHKEILELLSIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ SL K + ++ + + +EA+
Sbjct: 86 SKAKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYA-----HFKDLWLEEANQF 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID- 262
++ + E+ + P+ + N+ + R ++
Sbjct: 132 SSDDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKSTYRDNPFLNG 191
Query: 263 ---PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
++ E Y + R+EV G+ I
Sbjct: 192 GDVQAWLEKQKLAYHGNDIGFRIEVLGEEFDFGTARLIK 230
>gi|319409256|emb|CBI82900.1| phage-related protein [Bartonella schoenbuchensis R1]
Length = 441
Score = 56.1 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/267 (14%), Positives = 71/267 (26%), Gaps = 28/267 (10%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT A + + ++C + L + E+ + +
Sbjct: 27 GGRGSGKTRSFALMSAVVGYRHGKAGERGIILCARQFQNSLNESSLEEIKRAIE------ 80
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+Y D + +G + DE
Sbjct: 81 ------SYSFLRDYYEIGDKYVRSKDGRIIYAFAGLDRNIASIKSMG----RILLCWVDE 130
Query: 200 ASGTPDVINLGILGFLTERNANRFWIM--TSNPRRLSGKFYEIFNKPLDDW-KRFQIDTR 256
A + ++ L E N + T NP R + + F D K +I+ R
Sbjct: 131 AEPVTETAWQTLIPTLREEGENWHCELWVTWNPLRENAPVEKRFRAVKDPHIKGVEINWR 190
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ A + + G++ Q ++ ++E P
Sbjct: 191 DNPQFPDRLNRAREADFTQRPEQYNHIWEGEYLQAVQGAYYQKLLLEAEQEGRITHVPRD 250
Query: 317 PLI-----MGCDIAEEGGDNTVVVLRR 338
PLI D T + + +
Sbjct: 251 PLIQIKIFWDIGGTGAKADATALWVAQ 277
>gi|167770494|ref|ZP_02442547.1| hypothetical protein ANACOL_01839 [Anaerotruncus colihominis DSM
17241]
gi|167667089|gb|EDS11219.1| hypothetical protein ANACOL_01839 [Anaerotruncus colihominis DSM
17241]
Length = 418
Score = 56.1 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/268 (11%), Positives = 71/268 (26%), Gaps = 21/268 (7%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
H S + K GRG K++ + + M + IC L++++
Sbjct: 16 HWDISEDRHTHYWLK----GGRGSTKSSFISVEIPLGMVQDKQANAICYRKFGNTLESSV 71
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+A++ + L ++ + + + + G+D + +
Sbjct: 72 YAQLIWAIEQLGIAEYWTINKSPMRLTYRPTGQVVLFRGLD-----------DPNKSKSI 120
Query: 185 VGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
H + + + I + + + + P+ +
Sbjct: 121 KLPHGYFKYIWFEEADQYDDMEEIRKVTQSVIRSSGKPKVFYSYNPPKSVQSWINNEILI 180
Query: 244 PLDDWKRFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
P D V + F + D R E G+ + F + +
Sbjct: 181 PRKDQIVHHSTYLDVPKAWLGDQFLTEAEHLKNVKPDAYRHEYLGEVTGTGGEVFDNIRL 240
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGG 329
E E + + G D
Sbjct: 241 EEI---TEEQIFRFDNIRQGNDWGYAAD 265
>gi|226315677|ref|YP_002775693.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
gi|226202054|gb|ACO38634.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
Length = 396
Score = 56.1 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 67/219 (30%), Gaps = 18/219 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSVDGGDTLAIRKKKNKTTQSIHKEILELLSIHNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ SL K + ++ + + +EA+
Sbjct: 86 SKAKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYA-----HFKDLWLEEANQF 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID- 262
++ + E+ + P+ + N+ + R ++
Sbjct: 132 SADDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKSTYRDNPFLNG 191
Query: 263 ---PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
++ E Y + R+EV G+ I
Sbjct: 192 GDVQAWLEKQRLAYHGNDIGFRIEVLGEEFDFGTARLIK 230
>gi|169796738|ref|YP_001714531.1| putative phage terminase [Acinetobacter baumannii AYE]
gi|169149665|emb|CAM87555.1| conserved hypothetical protein; putative phage terminase
[Acinetobacter baumannii AYE]
Length = 437
Score = 56.1 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 52/350 (14%), Positives = 98/350 (28%), Gaps = 38/350 (10%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + P + + A + Q++ + + + W
Sbjct: 31 AFVAGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-----AFDW 85
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
++ D+ + Y T S E+P T VG + + D
Sbjct: 86 G--LKTKVYETNKEVDI------YYGRQYRTTIICRSMEKPATIVGFKIGHALIDELDVM 137
Query: 201 SGTP-DVINLGILGFLTERNAN----RFWIMTSNPRRLSGKFY----EIFNKPLDDWKRF 251
+ I+ + + A+ T + + + + +
Sbjct: 138 AKVKAQQAWRKIIARMRYKQASLLNGIDVATTPEGFKFTYEQFVKEANKSEAKRKLYGMI 197
Query: 252 QIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T E + + + Y + + GQF + P + + +
Sbjct: 198 QASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFDRVLNHTDE 254
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
PL++G D V V+R G D T I E++
Sbjct: 255 EIKQGEPLLIGMDFNVLKMAAVVYVIREGKPRALDELVGVRDTPTMCYLIK---ERFPDH 311
Query: 371 AIIIDANNTGARTCDY---------LEMLGYHVYRVLGQKRAVDLEFCRN 411
I + + +G T L+ G+ V D N
Sbjct: 312 DITVIPDASGQATSSKGFSESDHAILKKNGFKVEVNGVNPGIKDRINAVN 361
>gi|195942183|ref|ZP_03087565.1| hypothetical protein Bbur8_04905 [Borrelia burgdorferi 80a]
gi|219786709|ref|YP_002477434.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|219692709|gb|ACL33925.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi 156a]
gi|312148688|gb|ADQ31340.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
gi|312148897|gb|ADQ31544.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
JD1]
gi|312201269|gb|ADQ44578.1| phage terminase, large subunit, PBSX family [Borrelia burgdorferi
297]
Length = 396
Score = 56.1 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 67/219 (30%), Gaps = 18/219 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIHKEILELLSIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ SL K + ++ + + +EA+
Sbjct: 86 SKAKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYA-----HFKDLWLEEANQF 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID- 262
++ + E+ + P+ + N+ + R ++
Sbjct: 132 SADDIEMLIPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKSTYRDNPFLNG 191
Query: 263 ---PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
++ E Y + R+EV G+ I
Sbjct: 192 GDVQAWLEKQRLAYHGNDIGFRIEVLGEEFDFGTARLIK 230
>gi|152969966|ref|YP_001335075.1| hypothetical protein KPN_01413 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150954815|gb|ABR76845.1| hypothetical protein KPN_01413 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 434
Score = 56.1 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 58/356 (16%), Positives = 93/356 (26%), Gaps = 41/356 (11%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + M P I+ A + Q++ + V +
Sbjct: 23 AYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQIRDIFYPTVEEVAHD------ 76
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-- 198
++ + Y S E+P T VG + D
Sbjct: 77 -------WGLNVKINEGNKEVHFYAGRQYRGTTICRSMEKPQTIVGFKIGNALIDELDVM 129
Query: 199 EASGTPDVINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRF 251
A I +T+ P + + D +
Sbjct: 130 PAKKAQLAWRKIIARMRYNVAGLRNGIDVTTTPEGFKFVYQQFAKAVRDKPSLSTLYGLV 189
Query: 252 QIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T E + P + ++ Y ++ + + GQF + I + N
Sbjct: 190 QASTFDNEKNLPPDYIPSLMESY--PPELIKAYLRGQFTNLTSGT-IYHQFDRKLNNCRE 246
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL------- 363
P PL +G D V VLR G D I
Sbjct: 247 EEQPGEPLYIGMDFNVGKMAGVVHVLRLGLPFAVTEIIKAYDTPDMIRIIKERFWLCDGH 306
Query: 364 -VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
K R I DA+ ++ L+ G++V D N
Sbjct: 307 DYRKVREIYIYPDASGDSRKSSNASATDIAQLKQAGFNVVVNASNPPVKDRINAMN 362
>gi|82776058|ref|YP_402405.1| hypothetical protein SDY_0732 [Shigella dysenteriae Sd197]
gi|33323489|gb|AAQ07461.1| HI1410 hypothetical protein-like protein [Shigella flexneri]
gi|81240206|gb|ABB60916.1| hypothetical bacteriophage protein [Shigella dysenteriae Sd197]
Length = 97
Score = 56.1 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 15/71 (21%)
Query: 423 WLEFASLINHSGLIQ------------NLKSLKSFIVPNTGELAIESKR---VKGAKSTD 467
+ LI + G + +ESK+ + S +
Sbjct: 12 AINNGEQYPVDELISIDSRCPLLEKLKLELTTPHRDFDRNGRVMVESKKDLAKREIPSPN 71
Query: 468 YSDGLMYTFAE 478
+D + FA
Sbjct: 72 VADAFIMAFAP 82
>gi|221638881|ref|YP_002525143.1| hypothetical protein RSKD131_0782 [Rhodobacter sphaeroides KD131]
gi|221159662|gb|ACM00642.1| Hypothetical Protein RSKD131_0782 [Rhodobacter sphaeroides KD131]
Length = 432
Score = 56.1 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 53/419 (12%), Positives = 103/419 (24%), Gaps = 65/419 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS-TRPG-----ISVICLANSETQLKTTLWAEVSKWLSLL 135
+ GRG GKT A V + RPG V + + Q + + S L+
Sbjct: 40 VMGGRGAGKTRAGAEWVRAEVEGARPGDPGRSRHVALVGETIDQAREVMVFGESGILACS 99
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P E ++ A
Sbjct: 100 PPDRRPEWEAGRKRL------------------VWPNGAVAQIFSAHDPESLRGPQFDAA 141
Query: 196 INDEASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE + + + R ++T+ PR + + +
Sbjct: 142 WADELAKWGRAEEAWDMLQFSLRLGDQPRQVVTTTPRNVPVLRHIL---DNPSTVVTHAP 198
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
T + + + R E+ G + + IE +R P P
Sbjct: 199 TEANRAYLARSFLAEVHARYDGTRLGRQELEGLLLEDVEGALWTTARIE--ASRLEEPGP 256
Query: 315 YAPLIMGCDI---AEEGGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKIS 361
+++ D E D +++ V+ S
Sbjct: 257 LDRIVVAVDPPVTGTEASDECGILVVGARTAGPPQDWRAVVLEDASVSAASPDRWARAAL 316
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ ++ D ++ + N G + + V R E +
Sbjct: 317 EALARHGADRLVAEVNQGGDLVEAVIRQIDPLVPFRAVHASRGKAA-----RAEPVAALY 371
Query: 422 DWLEFASLINHSGLIQNL--KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ L L + + +L+ + +G S D D L++ E
Sbjct: 372 EQGRVRHLRGMGELEEQMCRMTLRGY---------------EGRGSPDRVDALVWAVTE 415
>gi|302336014|ref|YP_003801221.1| Terminase [Olsenella uli DSM 7084]
gi|301319854|gb|ADK68341.1| Terminase [Olsenella uli DSM 7084]
Length = 520
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/383 (12%), Positives = 81/383 (21%), Gaps = 31/383 (8%)
Query: 36 FPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA 95
F T G S R WQ + + + + R GKT +
Sbjct: 28 FDVIRFATETLGMSL-RPWQRWLLIHALEVVGDFGGDWHLRFSTVLTLVARQNGKTAVIG 86
Query: 96 WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
+ L+ + VI +A T+ W + P+ ++ +
Sbjct: 87 VVTLYWLYMLHAALVIGMAQDLTRSGD-TWDAAVAMVDDTPSLRAELVRPKRGNSGRDLV 145
Query: 156 DVLHCSLGIDSKHYST---------------MCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+++ G+ A
Sbjct: 146 LTHRRHYVTKPPTRGAGRGPSAQLVIMDEMREQQSWDAWDAMADTTLTQENGIIWCASNA 205
Query: 201 S-GTPDVINLGILGFLTERNANRFW--------IMTSNPRRLSGKFYEIFNKPLDDWKRF 251
V+ L W + G F D W
Sbjct: 206 GDALSIVLRSKRFQALRAIGDPDGWRVSQKDLAALNLPEDEALGLFEWSAAPGRDVWDTE 265
Query: 252 QIDTRTVEGIDPSFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ A G R E QF D P E +
Sbjct: 266 GWREANPSLGHGLTERKLRASISGKTEAGARTENLCQFVGVTEDPPFPDGAWEAGTDAAS 325
Query: 311 CPDPYAPLIMGCDIA--EEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR 368
P + L D++ V LR + L + +S +
Sbjct: 326 EIAPDSTLWWAIDVSANRMHSCIAVCGLRADRTYHVEVVAYRPGLGWVSGWLSERAD--P 383
Query: 369 PDAIIIDANNTGARTCDYLEMLG 391
+ I GA ++ G
Sbjct: 384 ARPMRIAYQGRGAPVTSMADVYG 406
>gi|120599287|ref|YP_963861.1| phage terminase [Shewanella sp. W3-18-1]
gi|120559380|gb|ABM25307.1| phage Terminase [Shewanella sp. W3-18-1]
Length = 581
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/392 (10%), Positives = 92/392 (23%), Gaps = 59/392 (15%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLNSVNNPNP 75
+W +F FP + + + P WQ + +
Sbjct: 58 IWDLAAANRAISF----FPKVLRLSGGDYEGKPFNLLDWQAFIVGSLFGWKDADGTR--- 110
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLS 133
+ +G+G GK+ L A + L+ + + A + Q L+ + ++
Sbjct: 111 RFRMCYVESGKGSGKSPLAAGIGLYGLVADGEASAEIYAAATKKDQAM-ILFRDAVSMVN 169
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
P LS + +L +K+ + G
Sbjct: 170 QSP--------QLSSRLKKSGTGQSVWNLAYLAKNSFFRPISSD-------NGQSGPRPH 214
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIFN---------K 243
+ DE + + ++ T+ M +N + Y K
Sbjct: 215 MALIDEVHEHKNNNVVEMMRAGTKGRKQALIFMITNSGHDRTSVCYSYHEYGKAICAGTK 274
Query: 244 PLDDWKRFQIDTRT-------------------VEGIDPSFHEGIIARYGLD--SDVTRV 282
D + F E + G+ + R
Sbjct: 275 EDDSFFAFICSLDEGDDPINDESCWQKANPSLGHTFTHKYLREQVTQAKGMPAKESIVRR 334
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI 342
Q+ ++ + + G D++ ++ +
Sbjct: 335 LNFCQWVDSASPWLSADTWMDCEDDFDISELYGEECYGGLDLSGTRDLTSLALYFPRVKT 394
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ W+ D + + I
Sbjct: 395 LLVEFWTPKDTLLDRERTDNVPYSAWLRQGFI 426
>gi|239998675|ref|ZP_04718599.1| putative phage associated protein [Neisseria gonorrhoeae 35/02]
gi|317163958|gb|ADV07499.1| putative phage associated protein [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 424
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/288 (12%), Positives = 88/288 (30%), Gaps = 27/288 (9%)
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ A +L L + RP + ++C+ + ++ T+ + ++ L H++E+ +
Sbjct: 34 KSHGAASALLALGAQRP-LRILCVREIQKSMRDTVHRLLKDKVAQLGLGHFYEITDFEIR 92
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209
+ + D+ + +E G
Sbjct: 93 ---------------GANGTLFVFSGLQSHTVDSIKSF--EGIDIVWVEEGHGVSKKSWD 135
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHE 267
+ + + + + T NP + + Y F P +D +I+ R + E
Sbjct: 136 VLTPTIRKEGSEIWI--TLNPDMETDETYRRFIAMPSEDTWLCEINWRDNPWFPEALNRE 193
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA---PLIMGCDI 324
+ A+ ++ + G+ + I + + PY P+ D+
Sbjct: 194 RLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDL 253
Query: 325 AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
D + L + ++ D T + +EK
Sbjct: 254 GW--NDAMTIGLVQRDLMSVRIIGYIEDTHRTLDWYVAELEKLPYRWG 299
>gi|325674311|ref|ZP_08154000.1| putative phage associated protein [Rhodococcus equi ATCC 33707]
gi|325554991|gb|EGD24664.1| putative phage associated protein [Rhodococcus equi ATCC 33707]
Length = 489
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 61/421 (14%), Positives = 107/421 (25%), Gaps = 36/421 (8%)
Query: 39 GEKGTPLEGFSA--PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
GEK L P WQ E + + + + R GK+ +
Sbjct: 9 GEKAVELARRIGAKPMPWQREALHALMTRNDDGRWTHSDACLIC----PRQNGKSLILTL 64
Query: 97 LVLWLMSTRPGISVICLANSETQLKTT---LWAEVSKWLSLLPNKHWFEMQSLSLHPAPW 153
+L+ + + G ++I A T + WA + SLL
Sbjct: 65 RILYGL-FKLGETIIFTAQRWTTAEEIYQRTWALIEPRKSLLARVKKTTCSQGRGVIEMK 123
Query: 154 YSDVLHCSLGIDSKHYSTMC-----------RTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + + T E I A
Sbjct: 124 NGNKVVFTTRSADAGRGLTKLDLVIYDEAYNLTDGEMSALGPAQLAADDPQTIYTSSAVN 183
Query: 203 TPDVINLGILGFLTERN----ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
+ N +L L ER ++ P + + + Q ++
Sbjct: 184 QDEHSNGLVLAALRERGLAGERELYFAEYMAPEEMDRADEATWQYANPSYGVIQTPSKI- 242
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ F + + R + + +D + + + + P L
Sbjct: 243 RKLMRGFATQAGRKSFDVEILGRGDWPIEELLEDTKPVVDMAGWSKLHDTAPAFTGSTCL 302
Query: 319 IMGCDIAEEGGDN----TVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ E D TV + + D T I VE P A++I
Sbjct: 303 AVDMSTERERSDRTCSITVAAKTKRGAHLQIGYHGAADTTTVVKFIVAAVEAGDPVAVVI 362
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV------KMADWLEFAS 428
D + L+ G + Q E HV +M + LE A
Sbjct: 363 DPKSAAQVLIKPLQRAGVEPELMRTQDVIESTSGFLTAVDEGHVTHDNDRRMDEALESAR 422
Query: 429 L 429
L
Sbjct: 423 L 423
>gi|307329066|ref|ZP_07608233.1| Terminase [Streptomyces violaceusniger Tu 4113]
gi|306885261|gb|EFN16280.1| Terminase [Streptomyces violaceusniger Tu 4113]
Length = 491
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/405 (11%), Positives = 97/405 (23%), Gaps = 63/405 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ ++ + + + ++ R GK + LW + ++
Sbjct: 41 DPWQRFVLDEGMGEKADGNWSS----PEVCVNVPRQCGKGGIIEARELWGLYVGGEQLIL 96
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ K + + + + P+ H ++ V + + +
Sbjct: 97 HSAHEFKTAKNA-FKRIERLIRSTPDLH--------KRVKRYWQTVGEEGIELHTGQLLR 147
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ I+ DE D + L + + W + S
Sbjct: 148 FI-------ARSGGSGRGFTADCIVLDEDMILGDDAMAALAPTLAAVDNPQTWYLGSAGI 200
Query: 232 RLSGKFYE--------IFNKPLDDWKRFQIDTRTVEGID-----PSFHEGII-------- 270
D + E D + H+ +
Sbjct: 201 GHQSVQLGRLRRRALAALESGDPDPTLAYFEWSIDEHRDECGQGCTEHDDVAAPESVLKA 260
Query: 271 ---------------ARYGLDSDVTRVEVC--GQFPQQDID--SFIPLNIIEEALNREPC 311
R L + E G +P D I + E
Sbjct: 261 NPAVGYRLTLEKCANERLTLGDTLFARERLGVGVYPSDVADTWQVIGEDAWRALAAAES- 319
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD-LRTTNNKISGLVEKYRPD 370
P PL D+ E + + V V+ H+ + L E++ P
Sbjct: 320 -APSDPLAFAIDMTPERSHSAIGVAGVSGVVTHVEVVDHQPGTGWVFERACELQERHNPR 378
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
++D L G +V ++ A + E
Sbjct: 379 CWVVDEGGPAGSLIPELRKRGLNVISPKTRQIAQACGQFYDAVAE 423
>gi|289807324|ref|ZP_06537953.1| hypothetical protein Salmonellaentericaenterica_24067 [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 96
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 443 KSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAENPPRSD 484
G + +ESK+ + S + +D + FA D
Sbjct: 43 PHRDFDRNGRVMVESKKDLAKRDIPSPNVADAFIMAFAPTDTSLD 87
>gi|331090232|ref|ZP_08339120.1| phage terminase [Lachnospiraceae bacterium 3_1_46FAA]
gi|330402178|gb|EGG81750.1| phage terminase [Lachnospiraceae bacterium 3_1_46FAA]
Length = 515
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 61/521 (11%), Positives = 133/521 (25%), Gaps = 110/521 (21%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP---GIS 109
SWQ E + + + + GK+ L A + L+ M+ G
Sbjct: 33 SWQDEIIRTLFGTVKENGYRQYNT---CYCEIPKKNGKSELAAAIALY-MTCGDGEWGAE 88
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V A+ Q + ++ + P +S+ +
Sbjct: 89 VYGCASDRQQA-SIVFDVAVDMVDQCPALKKRIKPVMSVKRLVYKPTN------------ 135
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMT 227
Y + + H A+I DE P ++ ++ G R ++++T
Sbjct: 136 ----SFYQVLSAEAYT-KHGLNVHAVIFDELHAQPNRELFDVMTKGSGDARTQPLYFLIT 190
Query: 228 SNPRRLSGKFYEIFNK----------------------PLDDWKRFQIDTRTVEGI-DPS 264
+ + +E K DDW + + +
Sbjct: 191 TAGTDRNSICFEQHQKAVDIIEGRKIDPTFYPVIYGASDEDDWTSEATWYKANPSLGETI 250
Query: 265 FHEGII------ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
E + + ++ R Q+ +Q A
Sbjct: 251 DIEKVRNAYISARENAAEENIFRQLRLNQWVKQSTRWMQMDKWDACAFPVNEEELIGRTC 310
Query: 319 IMGCDIAEEGG---------------------------DNTVVVLRRGPVIEHLFDWSK- 350
G D++ DN + +RR V ++
Sbjct: 311 YGGLDLSSTSDITAFVLVFPPRNDEEKYIILPYCWIPEDNMRLRVRRDHVPYDVWAAEGS 370
Query: 351 --------TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR 402
I L KY I D D LE +G+ V +
Sbjct: 371 LETTEGNVIHYGFIEKFIEELGTKYHIKEIAFDRWGATQMVQD-LEGMGFTVVPFGQGYK 429
Query: 403 AVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRV-K 461
+ + + + + + + +++ + G + ++ ++ +
Sbjct: 430 DMSPPT----KELMKLTLEERIAHGG----HKVLRWMMDNVYVRQDPAGNIKMDKEKSTE 481
Query: 462 GAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEGVDLLI 502
D + + R+ + G S Y+ +L+
Sbjct: 482 KI---DAAVATVMAL----DRAIRNQGSDGS-VYDARGILV 514
>gi|312984196|ref|ZP_07791542.1| putative phage terminase, large subunit [Lactobacillus crispatus
CTV-05]
gi|310894415|gb|EFQ43491.1| putative phage terminase, large subunit [Lactobacillus crispatus
CTV-05]
Length = 632
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/332 (11%), Positives = 80/332 (24%), Gaps = 43/332 (12%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW----LVLWLMSTRPGIS 109
WQ + +++ + IS GRG GKT + VL
Sbjct: 101 WQKFILAMINGWKDEN---DEKRFTDIHISVGRGQGKTQIAGIQMCKAVLIDTLNYTNKD 157
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ AN+ Q T L+ + K L + F + ++K +
Sbjct: 158 FLVTANTSDQ-STKLFGYIKKMLEAVIKIEPFASLAKESGLD--LQTNQIIEKRTNNKVW 214
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGI------------------ 211
+ + ++ G D + D I
Sbjct: 215 KISYEADKYDSTHNVLAIYDETGALNTYDRITDITDGQAQVIPYHQFIKISSAYPDPTSP 274
Query: 212 ------------LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
N ++ + E + K +
Sbjct: 275 FHQEQITLQHVMEKDYDREGDNSLCLVWAQDNLDETFKPETWEKSNPLIGLSH--SERKR 332
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ + + + + +Q S++ L +E A++ D +
Sbjct: 333 RTENLIKQRDQGMLTNTLHKFQNKNLNLWLKQSTASYLNLKDVENAVDDSFEID-GLRVY 391
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
MG D + + V + + W
Sbjct: 392 MGLDYSMFSDNTAVGFAFPYTTADGVHKWHMM 423
>gi|23455748|ref|NP_695057.1| putative terminase [Lactococcus phage r1t]
gi|1353546|gb|AAB18704.1| ORF29 [Lactococcus phage r1t]
Length = 469
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/347 (13%), Positives = 90/347 (25%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ ++ V A + + + R GKT + L LW + G+S++
Sbjct: 41 PWQKNLLKEVMAIDEDGLWTHQKFGYSI----PRRNGKTEIVYILELWSLVQ--GLSILH 94
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + ++ + ++ K+L + L
Sbjct: 95 TAHRISTSHSS-YEKLKKYLEDS------GYVEGEDFKSIKAKGQERLELIESGGVIQFR 147
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR- 231
RT S + F ++ DEA + +T+ + + + P
Sbjct: 148 TRTSSGGLGEGFD--------ILVIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTP 199
Query: 232 -------------------RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
+ SG D I A
Sbjct: 200 VSSGTVFTNYRDNTIAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEAE 259
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D V+ G +P+ + S I + I
Sbjct: 260 LGEDKLDHNVQRLGYWPKYNQKSVISEQEWNALKVNRLPVIKGK---LFVGIKYGNDGAN 316
Query: 333 V---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + ++ + +R N I ++K + ++ID
Sbjct: 317 VAMSIAVKTLSGKVFVETIDCQSIRNGNQWIINFLKKADVEKVVIDG 363
>gi|85707067|ref|ZP_01038155.1| phage Terminase [Roseovarius sp. 217]
gi|85668353|gb|EAQ23226.1| phage Terminase [Roseovarius sp. 217]
Length = 537
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/397 (12%), Positives = 94/397 (23%), Gaps = 67/397 (16%)
Query: 21 SDEIKLSFSNFVLHFFPWGE-----KGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNP 75
+ W K L WQ + + +
Sbjct: 11 DGSEIADPLGYGERAVTWLRRLKHPKNPALGHPFQLDPWQERIVRKIYGPRHEDGSRVVR 70
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGISVICLANSETQLKTTLWAEVSKWL 132
V RG KT+L A + L + PG + A++ Q +
Sbjct: 71 RVVLLL---PRGNRKTSLAAAITLLHLIGPERLPGGLTVSAASAREQAMELFNEAATIIQ 127
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
++ A + ++ D K H
Sbjct: 128 HDRRLSKHLSVREYVSRIAFNQIGARYVAVASDGKV------------------QHGKTP 169
Query: 193 MAIINDEASGTPD----VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN------ 242
+I DE + L + I T++ R +
Sbjct: 170 NVVIADELHAWEGRAGLRQWEALDSALVKVPGTLMIIATTSGRGQENLAWNQVEYAIKVQ 229
Query: 243 ----------------KPLDDWKRFQIDTRTVEGIDPSFHE--------GIIARYGLDSD 278
+P DDW+ + T G+ + + + D
Sbjct: 230 KGDIDDPATLPVIFMVEPTDDWRDEDVWYATNPGLRHGYPDIMGFRDKAQKAEHSPFERD 289
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEA---LNREPCPDPYAPLIMGCDIAEEGGDNTVVV 335
++ Q F+ ++ +E ++ + AP +G D+++ VV
Sbjct: 290 SFLQFNLNRWLDQSTSPFVEMHTYDEGAHEVDLDEMEMVQAPCWLGVDLSKNEDLTVVVA 349
Query: 336 LRR-GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
+ G + W ++ Y A
Sbjct: 350 AWQNGEEGYQVHPWFFCPEDNLRDRGDRHGVDYVSWA 386
>gi|268594527|ref|ZP_06128694.1| phage terminase [Neisseria gonorrhoeae 35/02]
gi|268547916|gb|EEZ43334.1| phage terminase [Neisseria gonorrhoeae 35/02]
Length = 426
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/288 (12%), Positives = 88/288 (30%), Gaps = 27/288 (9%)
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ A +L L + RP + ++C+ + ++ T+ + ++ L H++E+ +
Sbjct: 36 KSHGAASALLALGAQRP-LRILCVREIQKSMRDTVHRLLKDKVAQLGLGHFYEITDFEIR 94
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209
+ + D+ + +E G
Sbjct: 95 ---------------GANGTLFVFSGLQSHTVDSIKSF--EGIDIVWVEEGHGVSKKSWD 137
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHE 267
+ + + + + T NP + + Y F P +D +I+ R + E
Sbjct: 138 VLTPTIRKEGSEIWI--TLNPDMETDETYRRFIAMPSEDTWLCEINWRDNPWFPEALNRE 195
Query: 268 GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA---PLIMGCDI 324
+ A+ ++ + G+ + I + + PY P+ D+
Sbjct: 196 RLKAQRSMNKEDYGNIWEGRPRMVSEGAVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDL 255
Query: 325 AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
D + L + ++ D T + +EK
Sbjct: 256 GW--NDAMTIGLVQRDLMSVRIIGYIEDTHRTLDWYVAELEKLPYRWG 301
>gi|293608730|ref|ZP_06691033.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829303|gb|EFF87665.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 430
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/350 (14%), Positives = 99/350 (28%), Gaps = 38/350 (10%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + P + + A + Q++ + + + W
Sbjct: 24 AFVAGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-----AFDW 78
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
++ D+ + Y T S E+P T VG + + D
Sbjct: 79 G--LKTKVYETNKEVDI------YYGRQYRTTIICRSMEKPATIVGFKIGHALIDELDVM 130
Query: 201 SGTP-DVINLGILGFLTERNA----NRFWIMTSNPRRLSGKFY----EIFNKPLDDWKRF 251
+ I+ + + A T + + + + +
Sbjct: 131 AKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKSEAKRKLYGMI 190
Query: 252 QIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T E + + + Y + + GQF + P + + +
Sbjct: 191 QASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFDRVLNHTDE 247
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
PL++G D V V+R G + +R T + E++
Sbjct: 248 EIKKGEPLLIGMDFNVLKMAAVVYVIREG---KPRALDELVGVRDTPTMCQLINERFPDH 304
Query: 371 AIIIDANNTGARTCDY---------LEMLGYHVYRVLGQKRAVDLEFCRN 411
I + + +G T L+ G+ V D N
Sbjct: 305 DITVIPDASGQATSSKNFSESDHAILKKNGFKVEVNGVNPGIKDRITAVN 354
>gi|293374297|ref|ZP_06620625.1| phage terminase, large subunit, PBSX family [Turicibacter sanguinis
PC909]
gi|292647130|gb|EFF65112.1| phage terminase, large subunit, PBSX family [Turicibacter sanguinis
PC909]
Length = 418
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/336 (13%), Positives = 91/336 (27%), Gaps = 41/336 (12%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
G G GK+ ++ + V T + ++W + L L +
Sbjct: 32 GGAGSGKSHFVIQKLIIKA-CQSKRKVCMCRRYGTTINNSIWDLTKQMLRQLKLLDQCSV 90
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
S + + LG+D + ++ +E
Sbjct: 91 NK-SERSITLPNGSMIIMLGLDDEEKLLSINGVTD----------------FFIEEIFEV 133
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--QIDTRTVEGI 261
P I I L + NP + F + + + +
Sbjct: 134 PQEIVDQIDLRLRAKAPYLQIYGCFNPISPHHWLHGFCEGDKQPADLFYDRSNYKDNPFL 193
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID------SFIPLNIIEEALNREPCPDPY 315
S+ + + + + + R+ G + +FI + I+ D
Sbjct: 194 PQSYVDSLESLKTRNPNKYRIFAEGNWGTDLDGLVFKHINFINSHDIDVNA---MLKDKS 250
Query: 316 APLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
+ G DI E D T + + + + F L I L +
Sbjct: 251 WQVRCGMDIGEL--DPTAIAVSLFNERTQALYLIKEFYQRGATLDEMYEAIINLGIQ--K 306
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
I +D+ + YL+ G + + +V+
Sbjct: 307 QKIYVDS--ASPQVISYLKSKGINAQPCIKGAGSVE 340
>gi|224796986|ref|YP_002642738.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|224553700|gb|ACN55104.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|312149848|gb|ADQ29915.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
N40]
Length = 396
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 67/219 (30%), Gaps = 18/219 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIHKEILELLSIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ SL K + ++ + + +EA+
Sbjct: 86 SKAKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYA-----HFKDLWLEEANQF 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID- 262
++ + E+ + P+ + N+ + R ++
Sbjct: 132 SADDIEMLVPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKSTYRDNPFLNG 191
Query: 263 ---PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
++ E Y + R+EV G+ I
Sbjct: 192 GDVQAWLEKQRLAYHGNDIGFRIEVLGEEFDFGTARLIK 230
>gi|226234361|ref|YP_002775493.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
gi|226201889|gb|ACO38473.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
29805]
Length = 396
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 67/219 (30%), Gaps = 18/219 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIHKEILELLSIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ SL K + ++ + + +EA+
Sbjct: 86 SKAKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYA-----HFKDLWLEEANQF 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID- 262
++ + E+ + P+ + N+ + R ++
Sbjct: 132 SADDIEMLVPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKSTYRDNPFLNG 191
Query: 263 ---PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
++ E Y + R+EV G+ I
Sbjct: 192 GDVQAWLEKQRLAYHGNDIGFRIEVLGEEFDFGTARLIK 230
>gi|11496682|ref|NP_045481.1| hypothetical protein BBG21 [Borrelia burgdorferi B31]
gi|218868779|ref|YP_002455248.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
gi|224796961|ref|YP_002642637.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|224985496|ref|YP_002642672.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|225548803|ref|YP_002724009.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
gi|2690026|gb|AAC66069.1| predicted coding region BBG21 [Borrelia burgdorferi B31]
gi|218165273|gb|ACK75330.1| phage terminase, large subunit, pbsx family protein [Borrelia
burgdorferi ZS7]
gi|223929545|gb|ACN24257.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
64b]
gi|224554186|gb|ACN55578.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
WI91-23]
gi|225546810|gb|ACN92808.1| phage terminase, large subunit, pbsx family [Borrelia burgdorferi
118a]
Length = 396
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 67/219 (30%), Gaps = 18/219 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RG GKT A + L + G + + + + ++ E+ + LS+ + +F +
Sbjct: 26 SSRGTGKTYDIATVNLERKFSADGGDTLAIRKKKNKTTQSIHKEILELLSIYNLRKFFNI 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ SL K + ++ + + +EA+
Sbjct: 86 SKAKIESK---------SLIFGKKRAFVFEGGHDTRDLKSYA-----HFKDLWLEEANQF 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID- 262
++ + E+ + P+ + N+ + R ++
Sbjct: 132 SADDIEMLVPTMREQGGRIYMSSNPVPKSHWLYKRYLSNQDNPAVCIIKSTYRDNPFLNG 191
Query: 263 ---PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
++ E Y + R+EV G+ I
Sbjct: 192 GDVQAWLEKQRLAYHGNDIGFRIEVLGEEFDFGTARLIK 230
>gi|260556008|ref|ZP_05828228.1| PBSX family phage terminase, large subunit [Acinetobacter baumannii
ATCC 19606]
gi|260410919|gb|EEX04217.1| PBSX family phage terminase, large subunit [Acinetobacter baumannii
ATCC 19606]
Length = 435
Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/350 (14%), Positives = 99/350 (28%), Gaps = 38/350 (10%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + P + + A + Q++ + + + W
Sbjct: 29 AFVAGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-----AFDW 83
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
++ D+ + Y T S E+P T VG + + D
Sbjct: 84 G--LKTKVYETNKEVDI------YYGRQYRTTIICRSMEKPATIVGFKIGHALIDELDVM 135
Query: 201 SGTP-DVINLGILGFLTERNA----NRFWIMTSNPRRLSGKFY----EIFNKPLDDWKRF 251
+ I+ + + A T + + + + +
Sbjct: 136 AKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKSEAKRKLYGMI 195
Query: 252 QIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T E + + + Y + + GQF + P + + +
Sbjct: 196 QASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFDRVLNHTDE 252
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
PL++G D V V+R G + +R T + E++
Sbjct: 253 EIKKGEPLLIGMDFNVLKMAAVVYVIREG---KPRALDELVGVRDTPTMCQLINERFPDH 309
Query: 371 AIIIDANNTGARTCDY---------LEMLGYHVYRVLGQKRAVDLEFCRN 411
I + + +G T L+ G+ V D N
Sbjct: 310 DITVIPDASGQATSSKNFSESDHAILKKNGFKVEVNGVNPGIKDRITAVN 359
>gi|319406198|emb|CBI79835.1| phage-related protein [Bartonella sp. AR 15-3]
Length = 442
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/350 (11%), Positives = 82/350 (23%), Gaps = 36/350 (10%)
Query: 84 AGRGIGKTT----LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT + A + T ++C + L + E+ + +
Sbjct: 27 GGRGSGKTRSFALMTAVIGYRHGKTGERGIILCARQFQNSLAESSLEEIKRAIE------ 80
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
S S + + Y+ + + + DE
Sbjct: 81 -----SYSFLSDYYEVGDKYIRSKDGRIVYAFAGLDRNIASVKSMGRI-----LLCWVDE 130
Query: 200 ASGTPDVINLGILGFLTERNANRF---WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
A D ++ L E W+ + R + + K +I+ R
Sbjct: 131 AEPVTDAAWQVLIPTLREEGKEWHSELWVTWNPCRENAAVEKRFRFTKDPNIKGVEINWR 190
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ A + + G++ ++ ++E P
Sbjct: 191 DNPKFPAKLNRDRTADLEQRPEQYQHIWEGEYLLAMQGAYYQKLLLEAEQEGRITTVPRD 250
Query: 317 PLI-----MGCDIAEEGGDNTVVVLRR----GPVIEHLFDWSKTDLRTTNNKI----SGL 363
PLI D T + + + + ++ L I
Sbjct: 251 PLIQVKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIGWICHKGYEK 310
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
P L+ G+ + Q R
Sbjct: 311 ALMVLPHDGATKDRVYNVSFESALQQAGFRTQIIPNQGVGAVKMRIEAVR 360
>gi|72384751|gb|AAZ67667.1| phage D3 terminase-like protein [Haemophilus parasuis 29755]
Length = 556
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/338 (10%), Positives = 80/338 (23%), Gaps = 33/338 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ+ + + + R K+T+ A L W + G I
Sbjct: 71 DWQIFLFANLLGFKYRDSG--LRKYRSAYVQVARKNAKSTIGAILANWFLVMEKGQQDIY 128
Query: 113 LANSETQLKTTLWAEVSKWL--------SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
A ++ + K L +H + P S
Sbjct: 129 TAAVSRDQARIVFDDAKKMAMLSKPLSKRLTIQQHKMLYPQKNSLMRPLASKSSTIEGTN 188
Query: 165 DSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
S + + + G + I S + +
Sbjct: 189 PSLAIVDEYHLHPDNSVYSALELGQGARPEGLLFAITTAGSN--------TISACKQHYD 240
Query: 221 NRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG-IIARYGL 275
I+ + S + ++ D + + + + I E I G+
Sbjct: 241 YCCQILDGTEKNESIFILIYELDDESEVDDPTQWIKANPNIGKSIPYKDFENTITKARGI 300
Query: 276 DSDVTR--VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
S+ + + N N E MG D++ ++
Sbjct: 301 PSEWVEMLTKRFNVWCNGSTPWLGEGNWKACGRNYEEERLHGKACYMGLDLSSTNDITSL 360
Query: 334 VVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
+ + + L+ NK + +++
Sbjct: 361 CYIFPTENNKVRLLTRHYIPEYQLQNVANKNRAIYQQW 398
>gi|288934973|ref|YP_003439032.1| hypothetical protein Kvar_2101 [Klebsiella variicola At-22]
gi|288889682|gb|ADC58000.1| protein of unknown function DUF264 [Klebsiella variicola At-22]
Length = 434
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 58/356 (16%), Positives = 93/356 (26%), Gaps = 41/356 (11%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + M P I+ A + Q++ + V +
Sbjct: 23 AYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQIRDIFYPTVEEVAHD------ 76
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-- 198
++ + Y S E+P T VG + D
Sbjct: 77 -------WGLNVKINEGNKEVHFYAGRQYRGTTICRSMEKPQTIVGFKIGNALIDELDVM 129
Query: 199 EASGTPDVINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRF 251
A I +T+ P + + D +
Sbjct: 130 PAKKAQLAWRKIIARMRYNVAGLRNGIDVTTTPEGFKFVYQQFAKAVRDKPSLSTLYGLV 189
Query: 252 QIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T E + P + ++ Y ++ + + GQF + I + N
Sbjct: 190 QASTFDNEKNLPPDYIPSLMESY--PPELIKAYLRGQFTNLTSGT-IYHQFDRKLNNCRE 246
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL------- 363
P PL +G D V VLR G D I
Sbjct: 247 EEQPGEPLYIGMDFNVGKMAGVVHVLRLGLPFAVNEIVKAYDTPDMIRIIKERFWLYDGN 306
Query: 364 -VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
K R I DA+ ++ L+ G++V D N
Sbjct: 307 DYRKVREIYIYPDASGDSRKSSNASATDIAQLKQAGFNVVVNASNPPVKDRINAMN 362
>gi|227355219|ref|ZP_03839624.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
gi|227164680|gb|EEI49541.1| phage terminase, large subunit [Proteus mirabilis ATCC 29906]
Length = 577
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/396 (11%), Positives = 97/396 (24%), Gaps = 57/396 (14%)
Query: 32 VLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGI 88
V+ FF K E P WQ + + + + +G+G
Sbjct: 65 VIDFFAKVLKLNGGEHEGKPFILLPWQCFVIGSIFGWKMTDGTR---RFRMVYVESGKGS 121
Query: 89 GKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
GK+ + + L+ + P V A + Q L+ + + P
Sbjct: 122 GKSPMAGGVGLYCLVADSEPRAEVYAAATKKDQAM-ILFRDAVAMVDQSPA--------- 171
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF-VGHHNTYGMAIINDEASGTPD 205
S + S G + +T S RP + G + DE +
Sbjct: 172 -------LSQRITKSGGTGKEWNLAYLKTSSFFRPISSDDGQSGPRPHCALIDEIHEHKN 224
Query: 206 VINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIFNKPL------------------- 245
+ ++ T+ M +N + Y+
Sbjct: 225 NTAVEMMRAGTKGRRQALIFMITNSGHDKTSVCYDYHEYGRKVAEGTIEDDSFFSYICSL 284
Query: 246 ----DDWKRFQIDTRTVEGI-----DPSFHEGIIARYGLD--SDVTRVEVCGQFPQQDID 294
D +K + + D E + G+ + R Q+ D
Sbjct: 285 DEGDDPFKDESCWGKANPSLGYTFSDRYLREQVTQARGMPAKESIVRRLNFCQWVDADNP 344
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR 354
++ G D++ + + ++ W+ D
Sbjct: 345 WINSETWMQCENTFTFDDLQGEECYGGLDLSGTKDLTALALYFPRLKRLYVEFWTPKDTL 404
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
K + + A +++
Sbjct: 405 LDRAKTDRVPYDLWVRQGFMHTTPGNAVRYEFVAER 440
>gi|281416387|ref|YP_003347411.1| terminase large subunit [Streptococcus phage Abc2]
gi|226823038|gb|ACO83165.1| terminase large subunit [Streptococcus phage Abc2]
Length = 623
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/405 (13%), Positives = 105/405 (25%), Gaps = 68/405 (16%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+ + F P + G P + WQ + ++ +
Sbjct: 71 YYDTDEAAKLLRFAR-ICPNVDTGEP----TQLMPWQKFILCMLFGWRNANGGK---RFS 122
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSL 134
+ +S GRG GKT L A L + + + + Q L + +
Sbjct: 123 RAIVSVGRGQGKTYLMAILTAYSYFIESLGLSNQDYLVTSINFKQT-NKLLGYIKSMMKQ 181
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ F+ + + L D ++ + +
Sbjct: 182 IIQNEPFKSLA----------NETELGLHSDQVIMKANNNVLRAISAESGQYD-SFHFTT 230
Query: 195 IINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---------K 243
I DE D ++ + G + N I T+ P S F E
Sbjct: 231 AIFDEIGEIETRDAVSKIVSGQVKVPNRQFIQISTAYP-NPSVPFREDQKILQQAMEDDD 289
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYG------------------LDSDV------ 279
D + + E DSD+
Sbjct: 290 NRDADTYLCLVWSQDNLDEVFQPETWAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLA 349
Query: 280 -TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR- 337
+V+ + D +SF+ L IE A+ E + +G D + + + +
Sbjct: 350 DFQVKNMNCWLLADSNSFLDLKDIENAVIPEFDI-RGKRVYVGLDASMFSDNTAIGFVYP 408
Query: 338 ----RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
G H+ S + +E+ + ++A
Sbjct: 409 YVGEDGSQKWHIEQHSFIPW-QQAGSLEAKMEQDGVNYRDLEAKG 452
>gi|223935635|ref|ZP_03627551.1| protein of unknown function DUF264 [bacterium Ellin514]
gi|223895643|gb|EEF62088.1| protein of unknown function DUF264 [bacterium Ellin514]
Length = 437
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 60/429 (13%), Positives = 119/429 (27%), Gaps = 68/429 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ R IG + A+ + ++ + +++ + + +W +
Sbjct: 25 VEKSRQIGFSYCTAYSAVRRVAAEEERLDVWVSSRDDAQARLFLEDCKEWARTMQI---A 81
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
E + + + S + + K + S H +I DE +
Sbjct: 82 EPDADEVV---FDSKTDFSAHVLQFKTGLRIYSLSSNPNALAGKRGH------VILDEFA 132
Query: 202 GTPDVI--NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD-----WKRFQID 254
D T + S R + F E+ ++ W ++
Sbjct: 133 LHADQRLLYRIAKPVTTWGG---QLEIISTHRGANSVFNEMIRGIKENGNKMGWSHHKVT 189
Query: 255 TRTVEGIDPSFHEGIIARYGL----------------DSDVTRVEVCGQFPQQDIDSFIP 298
I E I A+ G D + E C P + +FI
Sbjct: 190 LHDA--IAEGLVERINAKTGRNESREAYLARVESECLDQEQWLQEYCCV-PADETSAFIT 246
Query: 299 LNII-----EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR--GPVI--EHLFDWS 349
++I + + + PL +G D+ + D TV+ + G VI +
Sbjct: 247 YDMISGCEDDCLKDFNYLAECKNPLYLGVDVGRKR-DLTVMDVGEKIGDVIWDRLRIEMQ 305
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE-MLGYHVYRVLGQKRAVDLEF 408
++ L+ + IDA G + + G+ V V+
Sbjct: 306 GRTFAEQEFELERLLALPKLRRACIDATGIGMQLAERARERFGWKVEPVMFTAP------ 359
Query: 409 CRNRRTELHVKMADWLEFA--SLINHSGLIQNLKSLKSFIVPNTG-ELAIESKRVKGAKS 465
+ EL + E + L +L+ +K I + ES
Sbjct: 360 ---MKEELAFPLRGAFEDRTLRIARDPQLRADLRGIKKEITTSGNIRFVGESADS----H 412
Query: 466 TDYSDGLMY 474
D
Sbjct: 413 CDRFWAKAL 421
>gi|145642108|ref|ZP_01797678.1| terminase, ATPase subunit [Haemophilus influenzae R3021]
gi|145273187|gb|EDK13063.1| terminase, ATPase subunit [Haemophilus influenzae 22.4-21]
Length = 99
Score = 55.3 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
Query: 407 EFCRNRRTELHVKMADWLEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
E+ + + E+ +K + ++ L + ++ + ++K + TG++ S R + A
Sbjct: 6 EYNADLKNEMVLKTQNLIQKRRLKFDSGDNDIVSSFMTVKK-RITGTGKITYVSDRSEDA 64
Query: 464 KSTDYSDGLMYTFAENPPRSDMDFGRCPS 492
D S +M P D S
Sbjct: 65 SHGDLSWAIMNCILNVPYGLGGDVSSNKS 93
>gi|215484220|ref|YP_002326447.1| Terminase-like family protein [Acinetobacter baumannii AB307-0294]
gi|213985731|gb|ACJ56030.1| Terminase-like family protein [Acinetobacter baumannii AB307-0294]
Length = 413
Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/350 (14%), Positives = 99/350 (28%), Gaps = 38/350 (10%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + P + + A + Q++ + + + W
Sbjct: 7 AFVAGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-----AFDW 61
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
++ D+ + Y T S E+P T VG + + D
Sbjct: 62 G--LKTKVYETNKEVDI------YYGRQYRTTIICRSMEKPATIVGFKIGHALIDELDVM 113
Query: 201 SGTP-DVINLGILGFLTERNA----NRFWIMTSNPRRLSGKFY----EIFNKPLDDWKRF 251
+ I+ + + A T + + + + +
Sbjct: 114 AKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKSEAKRKLYGMI 173
Query: 252 QIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T E + + + Y + + GQF + P + + +
Sbjct: 174 QASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFDRVLNHTDE 230
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
PL++G D V V+R G + +R T + E++
Sbjct: 231 EIKKGEPLLIGMDFNVLKMAAVVYVIREG---KPRALDELVGVRDTPTMCQLINERFPDH 287
Query: 371 AIIIDANNTGARTCDY---------LEMLGYHVYRVLGQKRAVDLEFCRN 411
I + + +G T L+ G+ V D N
Sbjct: 288 DITVIPDASGQATSSKNFSESDHAILKKHGFKVETNGVNPGIKDRITAVN 337
>gi|303251439|ref|ZP_07337615.1| Putative terminase large subunit [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252326|ref|ZP_07534223.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307261236|ref|ZP_07542911.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|302649671|gb|EFL79851.1| Putative terminase large subunit [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860248|gb|EFM92264.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306868967|gb|EFN00769.1| Phage D3 terminase-like protein [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 556
Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/426 (10%), Positives = 93/426 (21%), Gaps = 45/426 (10%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+ EI F F + WQ+ + +
Sbjct: 39 YFDSEIVERFLKFSKVCPHVKGHLRGKAIELS--DWQVFLFANILGFKYRFTG--LRKYR 94
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL------ 132
I R K+T+ A L W + G I A ++ + +
Sbjct: 95 SAYIQVARKNAKSTVAAVLANWFLVMEKGQQDIYTAAVSRDQARIVFDDARQMAVLSKPL 154
Query: 133 --SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVG 186
+ +H + P + S + + + G
Sbjct: 155 KKRVQIQQHKMIYPQNNSLMRPLAAKSSTIEGTNPSLAIVDEYHLHPDNSVYSALELGQG 214
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY----EIFN 242
+ I S + + I+ N + S + +
Sbjct: 215 ARPEGLLFAITTAGSN--------TISACKQHYDYCCQILDGNEQNESIFIMIFELDDES 266
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEG-IIARYGLDSDVTR--VEVCGQFPQQDIDSFIPL 299
+ D + + + + I E I G+ S+ + +
Sbjct: 267 EVDDPSQWIKANPNIGKSIPFQDFENTIAKARGIPSEWVEMLTKRFNVWCNGSTPWLGEG 326
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV--------LRRGPVIEHLFDWSKT 351
N + + MG D++ ++ +R +
Sbjct: 327 NWKACERSYQETDLHGKECYMGLDLSSTNDLTSICYVFPMPTGKVRTITRHYIPEYQLQN 386
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG-YHVYRVLGQKRAVDLEFCR 410
D + D L+ G +++ +
Sbjct: 387 VANKNRAIYRQWERMGWLRVTGGDCIDYDRIRDDILKDSGIFNIKMIGFDVWNATH---- 442
Query: 411 NRRTEL 416
RT+L
Sbjct: 443 -LRTQL 447
>gi|46402088|ref|YP_006582.1| putative large terminase subunit [Klebsiella phage phiKO2]
gi|40218232|gb|AAR83018.1| putative large terminase subunit [Klebsiella phage phiKO2]
Length = 569
Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/333 (12%), Positives = 84/333 (25%), Gaps = 35/333 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
WQ + + I R GK+ A + ++
Sbjct: 81 EPWQSFIFCSIFGWVTKKDKK--RRFREAYIRVARKNGKSFFAAGVGIYTFCADGENSAE 138
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFE---MQSLSLHPAPWYSDVLHCSLGIDS 166
V C A + Q K L + F+ P + G
Sbjct: 139 VYCGATTMAQAKKVFTPARQMASRLPALRSRFDISVWTDSLTRPDGSVFAPMAGKPGDGD 198
Query: 167 KHYSTMCRTYSEERPDTF-------VGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + Y E D +G + II S ++
Sbjct: 199 SPHCAIIDEYHEHDTDHMYEAMTMGMGARSQPLTLIITTAGSSLESPCYD------KDKE 252
Query: 220 ANRFWIMTSNPRRLSGKFY--EIFNKPLDDWKRFQIDTR---TVEGIDPSFHEGIIARYG 274
+ RL G Y ++ + D + + +V+ D + +
Sbjct: 253 VKEAIEGITCNERLFGMIYELDVGDDWTDPKNLIKANPNLNVSVKYSDLVELLEVAKQVP 312
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP--YAPLIMGCDIAEEGGDNT 332
+ + + + +F + + A ++ + +G D+A++ N
Sbjct: 313 RKVNAFKTKRLNIWVSGKS-AFYNMEQWKAAEDKNLKLEDFANDTCNVGLDLAKKLDMNA 371
Query: 333 VVVL-------RRGPVIEHLFDWSKTDLRTTNN 358
+ L +R W D T +
Sbjct: 372 GIRLFTREIEGKRHYYCIKPKFWVPEDTIHTTD 404
>gi|261209155|ref|ZP_05923551.1| phage terminase [Enterococcus faecium TC 6]
gi|289566713|ref|ZP_06447128.1| phage terminase [Enterococcus faecium D344SRF]
gi|260076868|gb|EEW64599.1| phage terminase [Enterococcus faecium TC 6]
gi|289161483|gb|EFD09368.1| phage terminase [Enterococcus faecium D344SRF]
Length = 596
Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/335 (11%), Positives = 82/335 (24%), Gaps = 31/335 (9%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
++ +EI F+ + F + WQ + +
Sbjct: 78 IFDEEIGHRPIRFIEDNC--RPTEGDFDRFIL-QPWQHFIIGSMFGWIHKDTGIRRFREA 134
Query: 79 KGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ GR GKT+L + L +++ G +V LAN++ Q + L+ + + + P
Sbjct: 135 LTFV--GRKNGKTSLISGLSAYMLGYDHEQGANVYVLANAKDQA-SILFDKTKEMVKQSP 191
Query: 137 NKHWFEMQSLSL--------HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDTF 184
SL SD + +
Sbjct: 192 RLDKKYKPQRSLIKDEATFSKMEARASDSKKLDGLNTHFAIFDEIHEFINFKLINVIKKS 251
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFL-----TERNANRFWIMTSNPRRLSGKFYE 239
G + I + L E + + +
Sbjct: 252 RGTRRQPLIVYITTAGYVLDGPLMQYYDNALDCLEHLEDGLDERVFYFVAKLDDVSEADD 311
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
N W + + + +D + + F D SF+ +
Sbjct: 312 PRN-----WIKANPNIGLMSFVDLVTDWKTERNSPQERADWITKQFNLFSDIDELSFLDM 366
Query: 300 NIIE-EALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
I + + G D++E +
Sbjct: 367 QTINKNNKIIDWETMEGEECVGGYDLSETQDFTSA 401
>gi|163868971|ref|YP_001610200.1| hypothetical protein Btr_1983 [Bartonella tribocorum CIP 105476]
gi|161018647|emb|CAK02205.1| phage-related protein [Bartonella tribocorum CIP 105476]
Length = 453
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/359 (11%), Positives = 91/359 (25%), Gaps = 39/359 (10%)
Query: 84 AGRGIGKTT----LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT ++A + ++C + L + E+ + + P
Sbjct: 39 GGRGSGKTRSFALMSAVVGYRHGMAGERGIILCARQFQNSLNESSLEEIKRAIEAYP--- 95
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+Y D + +G DE
Sbjct: 96 ---------FLQDYYEIGDKYIKSKDGRIAYVFAGLDRNIASIKSMG----RVFLCWVDE 142
Query: 200 ASGTPDVINLGILGFLTERNANR---FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
A + ++ L E + W+ + + N + K +I+ R
Sbjct: 143 AEPVTETAWQTLIPTLREEGDDWNAELWVTWNPYHENAPVEKRFRNVDNPNIKGVEINWR 202
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ ++ + G + Q ++ ++E + P
Sbjct: 203 DNPKFPEKLNRDRLSDLQQRPEQYNHIWEGGYLQAVQGAYYQKCLLEAEMEGRITTVPRD 262
Query: 317 P---LIMGCDIAEEG--GDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P + + DI G D T + + + G I L + + + Y
Sbjct: 263 PLMQVRIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHVGWVFQRGYEK 322
Query: 370 DAIIIDANNTGARTC------DYLEMLGYHVYRVLGQKRAVDLEFCRNRRT---ELHVK 419
+++ + L+ G+ + Q R L
Sbjct: 323 ALMVLPHDGATKDRVYNVSFESALQQAGFQTKIIPNQGTGAVKMRIEAVRRLFPALWFN 381
>gi|77463023|ref|YP_352527.1| putative large terminase [Rhodobacter sphaeroides 2.4.1]
gi|126461897|ref|YP_001043011.1| hypothetical protein Rsph17029_1129 [Rhodobacter sphaeroides ATCC
17029]
gi|77387441|gb|ABA78626.1| Putative large terminase [Rhodobacter sphaeroides 2.4.1]
gi|126103561|gb|ABN76239.1| protein of unknown function DUF264 [Rhodobacter sphaeroides ATCC
17029]
Length = 414
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 57/419 (13%), Positives = 106/419 (25%), Gaps = 65/419 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS-TRPG-----ISVICLANSETQLKTTLWAEVSKWLSLL 135
+ GRG GKT A V + RPG V + + Q + + S L+
Sbjct: 22 VMGGRGAGKTRAGAEWVRAEVEGARPGDPGRSRHVALVGETIDQAREVMVFGESGILACS 81
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P E ++ A
Sbjct: 82 PPDRRPEWEAGRRRL------------------VWPNGAVAQIFSAHDPESLRGPQFDAA 123
Query: 196 INDEASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE + + + R ++T+ PR +
Sbjct: 124 WADELAKWGRAEEAWDMLQFSLRLGDQPRQVVTTTPRNV--PVLRHILDNPSTVMTHAPT 181
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ SF + ARY + + R E+ G + + IE +R P P
Sbjct: 182 EANRAYLARSFLAEVHARYD-GTRLGRQELEGLLLEDVEGALWTTARIE--ASRLEEPGP 238
Query: 315 YAPLIMGCDI---AEEGGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKIS 361
+++ D E D +++ V+ S
Sbjct: 239 LDRIVVAVDPPVTGTEASDECGILVVGARTAGPPQDWRAVVLEDASVSAASPDRWARAAL 298
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ ++ D ++ + N G + + V R E +
Sbjct: 299 EALARHGADRLVAEVNQGGDLVEAVIRQIDPLVPFRAVHASRGKAA-----RAEPVAALY 353
Query: 422 DWLEFASLINHSGLIQNL--KSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ L L + + +L+ + +G S D D L++ E
Sbjct: 354 EQGRVRHLRGLGELEEQMCRMTLRGY---------------EGRGSPDRVDALVWAVTE 397
>gi|184157353|ref|YP_001845692.1| putative phage terminase [Acinetobacter baumannii ACICU]
gi|301345227|ref|ZP_07225968.1| putative phage terminase [Acinetobacter baumannii AB056]
gi|301595737|ref|ZP_07240745.1| putative phage terminase [Acinetobacter baumannii AB059]
gi|332851175|ref|ZP_08433263.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6013150]
gi|332869110|ref|ZP_08438600.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6013113]
gi|332875310|ref|ZP_08443140.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6014059]
gi|183208947|gb|ACC56345.1| putative phage terminase [Acinetobacter baumannii ACICU]
gi|332730195|gb|EGJ61521.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6013150]
gi|332732895|gb|EGJ64103.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6013113]
gi|332736478|gb|EGJ67475.1| phage terminase, large subunit, PBSX family [Acinetobacter
baumannii 6014059]
Length = 413
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/350 (14%), Positives = 99/350 (28%), Gaps = 38/350 (10%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + P + + A + Q++ + + + W
Sbjct: 7 AFVAGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-----AFDW 61
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
++ D+ + Y T S E+P T VG + + D
Sbjct: 62 G--LKTKVYETNKEVDI------YYGRQYRTTIICRSMEKPATIVGFKIGHALIDELDVM 113
Query: 201 SGTP-DVINLGILGFLTERNA----NRFWIMTSNPRRLSGKFY----EIFNKPLDDWKRF 251
+ I+ + + A T + + + + +
Sbjct: 114 AKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTYEQFVKEANKSEAKRKLYGMI 173
Query: 252 QIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T E + + + Y + + GQF + P + + +
Sbjct: 174 QASTYDNEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFDRVLNHTDE 230
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
PL++G D V V+R G + +R T + E++
Sbjct: 231 EIKKGEPLLIGMDFNVLKMAAVVYVIREG---KPRALDELVGVRDTPTMCQLINERFPDH 287
Query: 371 AIIIDANNTGARTCDY---------LEMLGYHVYRVLGQKRAVDLEFCRN 411
I + + +G T L+ G+ V D N
Sbjct: 288 DITVIPDASGQATSSKNFSESDHAILKKNGFKVEVNGVNPGIKDRITAVN 337
>gi|170752064|ref|YP_001758324.1| PBSX family phage terminase large subunit [Methylobacterium
radiotolerans JCM 2831]
gi|170658586|gb|ACB27641.1| phage terminase, large subunit, PBSX family [Methylobacterium
radiotolerans JCM 2831]
Length = 440
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/258 (12%), Positives = 72/258 (27%), Gaps = 25/258 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG K+ ++ L + R + V+C + + + A +++ + LL H ++
Sbjct: 23 GGRGGAKSWGFGRALVILGAQRK-LRVLCAREFQNSIAESAHALLAQQIDLLGLSHLYDT 81
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + LG + + ++ + G +EA
Sbjct: 82 QEKRI-------------LGTNGTEFIFKGLRHNVASVKSTEGV-----DVCWVEEARTV 123
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
++ + + + WI + + KP + +I
Sbjct: 124 SKTSWDVLIPTIRKEGSE-IWISFNTELAEDETYKRFVAKPPTGARVVKIGWEDNPWFPD 182
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE---EALNREPCPDPYAPLIM 320
+ + D G + I+ + DP P+
Sbjct: 183 VLRQEALDLKARDPIAYETVWGGNCKAVLDGAIYANEILAATTAKRFTKVPYDPTKPVHT 242
Query: 321 GCDIAEEGGDNTVVVLRR 338
D+ D T + +
Sbjct: 243 FWDLGRA--DKTSIWFAQ 258
>gi|229136616|ref|ZP_04265297.1| Phage terminase, large subunit [Bacillus cereus BDRD-ST196]
gi|228646848|gb|EEL03002.1| Phage terminase, large subunit [Bacillus cereus BDRD-ST196]
Length = 571
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 46/394 (11%), Positives = 104/394 (26%), Gaps = 65/394 (16%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+ +E + +G +E S+Q +
Sbjct: 44 YFDEEKADRLLEYAETLL--IGEGEEVEPLIL-ASFQAFIFGSLHGWVHKETG--YRRFR 98
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ GR GK+ +N L + + V C A + Q + E+ K+++
Sbjct: 99 SSYVQVGRQNGKSMMNGVLGTYYSNFDGYNYAQVYCTATKQDQA-NIVLKEMIKFIN--- 154
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ + ++ + ++ G + I
Sbjct: 155 --------TDEDLSECFKVKEYKNTIEALVTNGIIRALG---RDTESIDGFRS---YLGI 200
Query: 197 NDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK------------ 243
DE P + + + G T+ ++T+ L+ YE++
Sbjct: 201 VDEYHKHPTNQMYKLLEGGTTKLKECLISVITTAGFDLNSPCYELYEDSCRLLEGVYEDE 260
Query: 244 ---------PLDDWKRFQIDTRTVEGIDPSFHE----------GIIARYGLDSDVTRVEV 284
DD + + E R G + +
Sbjct: 261 KQFVYIAQLDKDDDIWDSNNWIKANPLVARDEEGIATLATMASTAKRRGGEELRNFLTKH 320
Query: 285 CGQFPQQDIDSFIPLN-IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
+ Q ++ + A + +G D++ G ++ G V
Sbjct: 321 LNIWVQFTDSQYMNMEHWKHCASELDLEDFRGKECYIGLDLSSGGDLTSL-----GAVFP 375
Query: 344 HLFDWSKTDLRTTNNKI--SGLVEKYRPDAIIID 375
+L + K +++ I + + E + D D
Sbjct: 376 YLREEVKNYFIHSHSFIPKNRVAEHIKTDNAPYD 409
>gi|26990586|ref|NP_746011.1| phage terminase, large subunit, putative [Pseudomonas putida
KT2440]
gi|24985568|gb|AAN69475.1|AE016582_13 phage terminase, large subunit, putative [Pseudomonas putida
KT2440]
Length = 602
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/364 (14%), Positives = 97/364 (26%), Gaps = 46/364 (12%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
R+L P+ + I+ F VL +G P E WQ + +
Sbjct: 44 RDLEEGPKRGLTWDLDAANKAIR--FYRTVLKLNGGEFEGLPFELL----PWQKFIVGSI 97
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS--VICLANSETQL 120
+ + +G+G GK+ L A + L + + A + Q
Sbjct: 98 FGWKSSDGYR---RFRVVYVESGKGSGKSPLAAGVGLTGLIADNEARAEIYAAATKKDQA 154
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
L+ + + P E+ + + L S + + +
Sbjct: 155 M-ILFRDAVAMVQQSP-----ELTKRLVCSGTGQNIWNLAYLK--SGSFFRPISSDDGQS 206
Query: 181 PDTF-----VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN---RFWIMTSNPRR 232
H ++ +GT I +T +N W R
Sbjct: 207 GPRPHMALIDEVHEHKTNMVVEMMRAGTKSRKQALIF-MITNSGSNKRGPCWEYHEYGSR 265
Query: 233 L-------SGKFYEIFNKPLDD--------WKRFQIDTRTVE-GIDPSFHEGIIARYGLD 276
+ G F I + D W + + + E + G+
Sbjct: 266 VASGALTDDGFFAYICSLDEGDDPIQDESCWFKSNPSLQDADLPGMKYLREQVTEARGMP 325
Query: 277 SDVTRVEVCGQFP-QQDIDSFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVV 334
S V +I ++ +A R P + G D++ + V
Sbjct: 326 SKEAMVRRLNFCEWTGAESPWISWDVWSQAEERVPMSLLRNRPSVGGLDLSSTTDLTSFV 385
Query: 335 VLRR 338
+L
Sbjct: 386 LLFY 389
>gi|92117273|ref|YP_577002.1| phage terminase [Nitrobacter hamburgensis X14]
gi|91800167|gb|ABE62542.1| phage Terminase [Nitrobacter hamburgensis X14]
Length = 540
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 52/441 (11%), Positives = 114/441 (25%), Gaps = 68/441 (15%)
Query: 19 MWSDEIKLSFSNF----VLHFFPWGEKGTPLEG-FSAPRSWQLEFMEVVDAHCLNSVNNP 73
++ D + V + L G WQ + + +
Sbjct: 9 LFDDSPIDDPFGYGERAVKFLRRLKHPKSRLPGNAFQLDPWQERIVRRIYGPR---NPDG 65
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR---PGISVICLANSETQLKTTLWAEVSK 130
+ V + RG K++L+A + L PG + A Q + + E
Sbjct: 66 SRVVKTVVLLIPRGNRKSSLSAAISLLHAIGPEKIPGGECVLAAADRKQA-SIAFKEAVD 124
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
+ + + + ++ A + + + H
Sbjct: 125 VVRM----DKRLVSATRIYDAFNSAKKIVLK----KGGSFIETISSDAGTA------HGK 170
Query: 191 YGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD--- 246
++ DE + + + + L + + + T++ R +EI ++
Sbjct: 171 SIALLVADELAQWRGTDLWIALKSSLPKVKDSLLVVATTSGRGQDNLAWEIVDRARKVAT 230
Query: 247 -------------------DWKRFQIDTRTVEGIDPSFHE--------GIIARYGLDSDV 279
DWK + R G+ + + D+
Sbjct: 231 GEINDPSMLPILFETDAGADWKDEALLYRANPGLTLGYQDISGLRQLVREAETSMTARDM 290
Query: 280 TRVEVCGQFPQQDIDSFIPLNII-EEALNREPCPDPYAPLIMGCDIAEEGGDNTVV-VLR 337
+ + F+ + + E A + P +G D++ + +V R
Sbjct: 291 VQNLHLNVWLDSSAAPFVDMTVYDEGAGEIDLAALEGEPCWLGVDLSSSIDLSVIVAAFR 350
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKY--RPDAIIIDANNTGARTCDYLEMLGYHVY 395
G + + + Y +I+A + V
Sbjct: 351 DGDDGYIVVPYFFCPADNLRQRQEATGAPYIDWQARGLIEAT---PGNVIDFRRVEERVR 407
Query: 396 R----VLGQKRAVDLEFCRNR 412
Q+ AVD RN
Sbjct: 408 ELCETYSVQEIAVDPAMARNL 428
>gi|84687555|ref|ZP_01015431.1| hypothetical protein 1099457000249_RB2654_04994 [Maritimibacter
alkaliphilus HTCC2654]
gi|84664464|gb|EAQ10952.1| hypothetical protein RB2654_04994 [Rhodobacterales bacterium
HTCC2654]
Length = 260
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/268 (13%), Positives = 74/268 (27%), Gaps = 49/268 (18%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
P +WQ F+ R IGK+ A L PG +
Sbjct: 29 PPDNWQRRFL--------------TTASPFVMALCSRRIGKSQTTAILAA-QTIGAPGRT 73
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V+ L+ + Q + + W ++ + ++ A
Sbjct: 74 VLVLSPTLGQSQLLFKRILEAWAAMSLPIEKTRLTQTTMELANGSV-------------- 119
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ + + + G+ G +I +E + D + + + ++ +
Sbjct: 120 --VACVPAGQDGSSARGYGVKDGGLLIYEEGAFLADAVYDATIPIREDGG---RILLITT 174
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD-----SDVTRVEV 284
P + G + + + + +I R+ E E + + D E
Sbjct: 175 PGNVGGFAHTAWTENDE---IEKITARSTE------IERMAEKVAFDRRYMPPRQFATEH 225
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCP 312
++ D IE A P
Sbjct: 226 ELRW-SSGGDPLFASETIENAFVDIPEL 252
>gi|284007216|emb|CBA72504.1| phage terminase large subunit [Arsenophonus nasoniae]
Length = 441
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/252 (15%), Positives = 59/252 (23%), Gaps = 39/252 (15%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL---------WLMSTR 105
Q E + H N A GR GKT L L M
Sbjct: 14 QKELYQKSINHRFN------------AWKCGRRFGKTALIQILTASVTTQFFYRHGMKIP 61
Query: 106 PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
V Q + V ++L L + ++ + + ++
Sbjct: 62 NAGLVGIFTPEVKQQIEI-FDTVEEYLYPLITR-----KARNQGLIRLENGAKIDFWALN 115
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
+ R Y+ D N +V I L
Sbjct: 116 DNKLAGRGREYNRILIDEAAFTKNKE----------MLEEVWPKAIKPTLLTTKGGADVF 165
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
T N FY I N P + T I S + D V + E
Sbjct: 166 STPNGIDDENFFYAICNDPSLGFNVLHAPTAKNPFIPQSELDKEKEDN--DPRVYQQEFE 223
Query: 286 GQFPQQDIDSFI 297
+F + +
Sbjct: 224 AEFIDWSDAALL 235
>gi|13186147|emb|CAC33458.1| hypothetical protein [Legionella pneumophila]
Length = 453
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/308 (13%), Positives = 86/308 (27%), Gaps = 41/308 (13%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA----EVSKWLSLLPNKHWF 141
R GK + L WL+++ + + Q K +W E +W+ L+P
Sbjct: 40 RRFGKDAMFFNLA-WLVASMTRGNYLYTLPKIGQAKNVIWEGTDLEGRRWIDLIPKHLLA 98
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH-NTYGMAIINDEA 200
+ S K Y T D+ +G H + + E
Sbjct: 99 REPNQSER-----------------KIYFTSGSMLHITGADSILGAHLGSNLRGLFMSEF 141
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE- 259
T + + + + TS + + I N W ++
Sbjct: 142 QRTAPKVWDYLRPIINRSQGFACFNYTSFGQCHA-HRLRIANLHNPAWHCRKLTVNDTRD 200
Query: 260 -----GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI----IEEALNREP 310
P E + G+D D+ + E ++ +I E +
Sbjct: 201 NQGNYIFSPEQIED-ERKSGMDEDLIQQEYYCDDSVAVKGTYFAEHIQKARAEGRIVPTL 259
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRG------PVIEHLFDWSKTDLRTTNNKISGLV 364
P P+ D+ + ++ G + D + D+ ++ +
Sbjct: 260 EIYPSKPVHTSWDLGSKDTNSIWFFQVIGTGENQQFRYFYQHDENYKDIDYYLKLLALIQ 319
Query: 365 EKYRPDAI 372
++Y
Sbjct: 320 KQYGFSNY 327
>gi|281491541|ref|YP_003353521.1| phage terminase [Lactococcus lactis subsp. lactis KF147]
gi|281375259|gb|ADA64772.1| Phage protein, terminase [Lactococcus lactis subsp. lactis KF147]
Length = 469
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 46/347 (13%), Positives = 90/347 (25%), Gaps = 47/347 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ ++ V A + + + R GKT + L LW + G+S++
Sbjct: 41 PWQKNLLKEVMAIDEDGLWTHQKFGYSI----PRRNGKTEIVYILELWSL--EQGLSILH 94
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + ++ + ++ K+L + L
Sbjct: 95 TAHRISTSHSS-YEKLKKYLEDS------GYVEGEDFKSIKAKGQERLELIESGGVIQFR 147
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR- 231
RT S + F ++ DEA + +T+ + + + P
Sbjct: 148 TRTSSGGLGEGFD--------ILVIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTP 199
Query: 232 -------------------RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
+ SG D I A
Sbjct: 200 ISSGTVFTNYRDNTLAGKAKYSGWAEWSVEDVKDIHDVEAWYNSNPSMGYHLNERKIEAE 259
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
G D V+ G +P+ + S I + I
Sbjct: 260 LGEDKLDHNVQRLGYWPKYNQKSVISEQEWNVLKVNRLPVIKGK---LFVGIKYGNDGAN 316
Query: 333 V---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V + ++ + +R N I ++K + ++ID
Sbjct: 317 VAMSIAVKTLSGKVFVETIDCQSIRNGNQWIINFLKKADVEKVVIDG 363
>gi|323340493|ref|ZP_08080748.1| terminase [Lactobacillus ruminis ATCC 25644]
gi|323092037|gb|EFZ34654.1| terminase [Lactobacillus ruminis ATCC 25644]
Length = 488
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 51/359 (14%), Positives = 99/359 (27%), Gaps = 43/359 (11%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ ++ + A + + + R GKT + L LW + G++++
Sbjct: 60 PWQKNLVKDIMAVDEDGLWVHQKFGYSI----PRRNGKTEIIYILELWGL--HHGLNMLH 113
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + ++ + +V K+L + + + L
Sbjct: 114 TAHRISTSHSS-FEKVKKYLEKM------GLTDGEDFNSIRAKGQERIELYETGGVVQFR 166
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE-RNANRFWIMTSNPR 231
RT + + F +I DEA + +T+ N T
Sbjct: 167 TRTSNGGLGEGFD--------LLIIDEAQEYTTEQESALKYTVTDSENPMTVMCGTPPTP 218
Query: 232 RLSGKFYEIFN-------KPLDDWKRFQIDTR------TVEGIDPSFH------EGIIAR 272
SG + + W + + I A
Sbjct: 219 VSSGTVFTKYRETCLFGKAKYSGWAEWSVSEEKEIDDIDAWYNSNPSLGFHLTERKIEAE 278
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIA-EEGGDN 331
G D V+ G +P + S I + AL + P L G +
Sbjct: 279 LGEDKLDHNVQRLGFWPLYNQKSAIAATEWD-ALKVDSLPAFQGKLFAGVKYGQDGANAA 337
Query: 332 TVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
+ + + +R N I ++ + I+ID + D L+
Sbjct: 338 LSIAVHTADKRVFVETIDCQSVRNGNQWIVNFLKTADVEQIVIDGASRQKILADELKDY 396
>gi|300088365|ref|YP_003758887.1| hypothetical protein Dehly_1275 [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299528098|gb|ADJ26566.1| conserved hypothetical protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 442
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 57/405 (14%), Positives = 115/405 (28%), Gaps = 59/405 (14%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW--LMSTRPGI 108
P +Q E E V + ++ R GK L+A L +
Sbjct: 6 PFPYQTEIYEAVIDSIFKNRG------LTFSVEIARQGGKNELSALLEASLLFYYQQKSY 59
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
++I A + + ++ L + W + S+
Sbjct: 60 NIIKCAPTFN------------------PQALISLRRLCGRLSNWTLN-DVSSVERGYVV 100
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
R + NT + + DEA + + +
Sbjct: 101 RLGEARAFFLSAAPRSNVVGNTAHLLLEVDEAQDVTVEKFDRDFRPMAAVANATTVLYGT 160
Query: 229 NPRRLSGKFY-----EIFNKPLDDWKRFQIDTRTVEGIDP---SFHEGIIARYGLDSDVT 280
R+ S + F+ D R V G P F EG +AR G +
Sbjct: 161 PWRQGSLLDEVKSANLRLEADDGLRRHFRYDWRVVAGYRPLYRKFVEGEMARLGENHPTF 220
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEA--LNREPCPDPYAPLIMGCDIAEEGGD---NTVVV 335
R + + F +++ + R P P + G D+ + G ++V+
Sbjct: 221 RTQYALLPLEAGDGLFTDTHLMAMSGEYPRLRLPRPGDNYVGGLDLGGDAGAGADSSVLT 280
Query: 336 LRR---------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
+ + + F W+ ++ +V ++ + +DA G
Sbjct: 281 VAAVTPEPGGEPRLRVVNHFAWTGLPGGALIPRVLEVVRAWKLRRLAVDATGLGQPLAGM 340
Query: 387 LEM-LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
L LG + + ++ ++EL ++ + L
Sbjct: 341 LRRSLGSRIVSFVFTRKT---------KSELGYQLLASVGTGRLE 376
>gi|66395738|ref|YP_240074.1| ORF009 [Staphylococcus phage 37]
gi|62636161|gb|AAX91272.1| ORF009 [Staphylococcus phage 37]
Length = 419
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/263 (14%), Positives = 82/263 (31%), Gaps = 23/263 (8%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GK++ A +++ L+ R ++ + L + L +++ ++ ++++ H F+
Sbjct: 31 KGGRGSGKSSDIAIIIV-LLIMRYPVNALILRKIDNTLALSVFEQIKWAINVMGVSHLFK 89
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
++ + + +K + + ER + Y +A I + A
Sbjct: 90 IKVSPM---------EITYVPRGNKMVFRGAQ--NPERIKSLKDAQFPYAIAWIEELAEF 138
Query: 203 TPDVINLGILGFLTERNANRFWIM-----TSNPRRLSGKFYEIFNK--PLDDWKRFQIDT 255
+ I L + + P+R + + D+
Sbjct: 139 KTEDEVTTITNSLLRGELDNGLFYKFFYTYNPPKRKQSWVNKKYESSFQPDNTFVHHSTY 198
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
I F E A ++ R E G+ +P N + + D +
Sbjct: 199 LNNPFIAKEFIEEAKAAKAINELRYRWEYLGEAIGSG---VVPFNNLRIETIPKEQFDTF 255
Query: 316 APLIMGCDIAEEGGDNTVVVLRR 338
+ D D V
Sbjct: 256 DNIRNAVDFG-YATDPLAFVRWH 277
>gi|332558637|ref|ZP_08412959.1| phage terminase [Rhodobacter sphaeroides WS8N]
gi|332276349|gb|EGJ21664.1| phage terminase [Rhodobacter sphaeroides WS8N]
Length = 535
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 46/400 (11%), Positives = 97/400 (24%), Gaps = 73/400 (18%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAP--------RSWQLEFMEVVDAHCLNSVNN 72
+ W +K L+ P WQ + + +
Sbjct: 9 DGSEIPDPLGYGERAVAWLKK---LKHPKNPAIGHPFQLDPWQERIVRRIYGPRHPDGSR 65
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGISVICLANSETQLKTTLWAEVS 129
V + + RG KT+L A + L + PG + A++ Q
Sbjct: 66 ---IVRRVVLLLPRGNRKTSLCAAITLLHLIGPERTPGGLTVSAASAHEQALELFNEASL 122
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
+ ++ A + ++ D K H
Sbjct: 123 IVQHDHRLRKHLNIREYVSRIAFPKEGSRYVAVAADGKV------------------LHG 164
Query: 190 TYGMAIINDEASGTPD----VINLGILGFLTERNANRFWIMTSNPRRLSGKFYE------ 239
+I DE + L + + +++ R ++
Sbjct: 165 KTPNVVIADELHAWEGRAGLRQWEALDSALVKVPGTLMLVASTSGRGQENLAWKTIEYAI 224
Query: 240 ----------------IFNKPLDDWKRFQIDTRTVEGIDPSFHE--------GIIARYGL 275
+P DDWK + G+ + +
Sbjct: 225 RVQKGEIDDPATLPVIFMAEPEDDWKDEDLWHAVNPGLRHGYPDLDSYRDKARKAEFSPF 284
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEA---LNREPCPDPYAPLIMGCDIAEEGGDNT 332
+ D ++ Q F+ +++ + ++ + AP +G D+++
Sbjct: 285 ERDSFLQFNLNRWLDQSSSPFVEMHVYDRGAREVDLDELDMVQAPCWLGVDLSKNEDLTC 344
Query: 333 VVVLR-RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
VV G + W + Y A
Sbjct: 345 VVAAWEDGQDGYQVHPWFFCPEDNLRARGERHGVDYVTWA 384
>gi|293414703|ref|ZP_06657352.1| hypothetical protein ECDG_01266 [Escherichia coli B185]
gi|291434761|gb|EFF07734.1| hypothetical protein ECDG_01266 [Escherichia coli B185]
Length = 442
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/355 (11%), Positives = 91/355 (25%), Gaps = 43/355 (12%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A+ GR GKT + + + R + QL +
Sbjct: 28 AVCCGRRWGKTVMLVNIATSYATRR------FAVPTTGQLIAGRVGIFTAQYRQYQEIWD 81
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+L + L + + + + A++ DEA
Sbjct: 82 EICAALQPLILSQSKNEKRIILRNGGRIDFWV-------TDNNKLAGRGRKYHAVLIDEA 134
Query: 201 SG------TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
+ ++ I L + + T N S FY I + +
Sbjct: 135 AFTKSPEMLEEIWPRAIRPTLVDYRGCAWVFSTPNGIDESNFFYAICHDESLGFVMHHAP 194
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN-------------- 300
T + I E + D V + E +F D+ + ++
Sbjct: 195 TSSNPYIPKEELEETEKKS--DPRVWQQEYLAEFVDWSKDALLDVDKLLVDGQPIEMPPH 252
Query: 301 ------IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE-HLFDWSKTDL 353
+++ AL D + + ++ I+ L +
Sbjct: 253 CDMIFAVMDTALKGGTENDGTGVVYFAYESTYSDEPKLTIIDWDVTQIKASLLPEYIPGV 312
Query: 354 RTTNNKISGLVE-KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLE 407
+++ L + I ++ GA E G+ + + + +
Sbjct: 313 YDNLERLAKLCRPRLGSQGIFMEDAAMGAILNQKAETEGWDMTPIKSALTSKGKD 367
>gi|187939660|gb|ACD38803.1| phage terminase large subunit [Pseudomonas aeruginosa]
gi|187939739|gb|ACD38880.1| hypothetical phage protein [Pseudomonas aeruginosa]
Length = 431
Score = 54.9 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 55/412 (13%), Positives = 101/412 (24%), Gaps = 50/412 (12%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
AG G GKT + + P I+ A + Q++ + + + W
Sbjct: 22 VAGFGSGKTWVGCSGLAQHAWEWPRINAGYFAPTYAQIRDIFYPTMEEV-----AFDWGL 76
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ H Y T S E+P T VG + D S
Sbjct: 77 RTK--------INQANHEVHLYSGSAYRTTIICRSMEKPQTIVGFKVGRSLVDELDVLSL 128
Query: 203 TP--DVINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRFQI 253
I +T+ P F + + + + Q
Sbjct: 129 IKAQQAWRKIIARMRYKVDGLRNRVDVTTTPEGFKFVFQQFVKQLREKPHLQDLYGLVQA 188
Query: 254 DTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
T E + + + ++ Y + + GQF + I + +
Sbjct: 189 STYDNEANLPDDYIDSLMDSY--PPQLIAAYLRGQFVNLTSGT-IYTAYDRKLNASQETV 245
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG--------LV 364
P P+ +G D V V R G + D +I
Sbjct: 246 QPGEPIYVGMDFNVGKMAAVVHVKRLGLPHAVDEIVNGYDTPDMIRQIKERFWLYADGEY 305
Query: 365 EKYRPDAIIIDANNTGARTC-------DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
R I DA+ ++ L+ G+ V D N +
Sbjct: 306 RPTRQIRIYPDASGDSRKSVRASETDIALLKQAGFVVSAPAANPPVKDRINSMN---AMF 362
Query: 418 VKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
D + + + + + E + + +
Sbjct: 363 CNAKDERRYRVNPDRCPTYADALEQQVWGTNG------EPDKSADIDHPNDA 408
>gi|85058702|ref|YP_454404.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
gi|84779222|dbj|BAE73999.1| phage terminase large subunit [Sodalis glossinidius str.
'morsitans']
Length = 582
Score = 54.5 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/355 (11%), Positives = 94/355 (26%), Gaps = 51/355 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS--V 110
WQ + + N + AG+G GK+ L A + L+ + V
Sbjct: 90 PWQCFIVGTLFGWR---NNEGQRRFRMAYVEAGKGSGKSPLAAGIGLYCLVADNEARAEV 146
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A + Q L+ + + P L S +
Sbjct: 147 YAAATKKDQAM-ILFRDAVAMVDQSP----------KLAERIQKSGGAGKEWNLAFLQAR 195
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
R S + + H A+I++ + + + R +++T++
Sbjct: 196 AFFRPISADDGQSGPRPHC----ALIDEIHEHKSNQVVEMMRAGTKGRQQALIFMITNSG 251
Query: 231 RRLSGKFYEIFNKPLD-------DWKRFQIDTRTVEGIDP-------------------- 263
+ Y+ D+ F EG DP
Sbjct: 252 HNKTSVCYDYHEYGRKVAEGSIEDYSFFAFICSLDEGDDPFKDSGCWKKANPSLGHTFSE 311
Query: 264 -SFHEGIIARYGLD--SDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAPLI 319
E + G+ + R Q+ + + + + + +P
Sbjct: 312 RYLQEQVTQARGMPAKESLVRRLNFCQWVDAENPWINSDSWMACEKTSLDLASLANSPCY 371
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D++ + + + + ++ W+ D ++ + A +
Sbjct: 372 GGLDLSGKQDLTALALYWPEEKVAYVEFWTPKDTLLERARVDRVPYDTWLRAGYL 426
>gi|289423849|ref|ZP_06425642.1| putative phage terminase, large subunit [Peptostreptococcus
anaerobius 653-L]
gi|289155626|gb|EFD04298.1| putative phage terminase, large subunit [Peptostreptococcus
anaerobius 653-L]
Length = 593
Score = 54.5 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 50/390 (12%), Positives = 102/390 (26%), Gaps = 70/390 (17%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98
GE+ PL+ R +Q + + H +N +G I R GK+ L
Sbjct: 73 GEEEMPLKT----RGFQDFIIGSL--HGWKKKSNDALRYREGYIQIARQNGKSFLAGVEG 126
Query: 99 LWLMSTRPGI--SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD 156
+ R + C A + Q +W E++K++ S +
Sbjct: 127 NAWATFRGYKLGKIYCAATKQDQA-NIVWDELAKFIR-----------SDKWLDKMYKIR 174
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-VINLGILGFL 215
+ + D F + I DE P+ + +L
Sbjct: 175 EHDRIIKSYVTGTEIKAIGRDTKSADGFRS------VLSIVDEYHAHPNSKMYQLLLDGQ 228
Query: 216 TERNANRFWIMTSNPRRLSGKFYEI---------------------FNKPLDDWKRFQID 254
+ I+T+ + G ++ DD ++
Sbjct: 229 INVKSALTLIITTAGFTIGGACHKKYLLCKKILEGIVTKDSQFIYICEMDKDDDIWDPVN 288
Query: 255 TRTV-----EGIDPSFHEGIIARYGLDS------------DVTRVEVCGQFPQQDIDSFI 297
D + E +I + S + E+
Sbjct: 289 WAKTSPLRLWNEDDTLDEEMIDKIREKSITAKETGGNELVNFLTKELNCWVTNAGDQLLD 348
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR---RGPVIEHLFDWSKTDLR 354
+++ R I+G D++ G ++ ++ +G + S +
Sbjct: 349 NKKLLKCRSKRTLGDFKGRECILGIDLSSGGDLTSIALIFPPLKGEDKVFIHHHSFMPIM 408
Query: 355 TTNNKIS--GLVEKYRPDAIIIDANNTGAR 382
I + D ++D G
Sbjct: 409 RLQEHIKTDDAPYQLWADQGLLDLTTGGGG 438
>gi|270265272|ref|ZP_06193533.1| phage terminase, large subunit [Serratia odorifera 4Rx13]
gi|270040676|gb|EFA13779.1| phage terminase, large subunit [Serratia odorifera 4Rx13]
Length = 516
Score = 54.5 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 80/311 (25%), Gaps = 54/311 (17%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW--LMSTRPGISV 110
WQ + + + + + +G+G GK+ L+A + L+ + P V
Sbjct: 25 PWQAFVVGSIFGWKRANGSR---RFRTAYVESGKGSGKSPLSAGIGLYCLMADKEPRAEV 81
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A + Q L+ + ++ P S + S G +
Sbjct: 82 YAAATKKDQAM-ILFRDAVAMVNQSPA----------------LSQRIDPSGGAGKEWNL 124
Query: 171 TMCRTYSEERPDTF-VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+T S RP + G + DE D + ++ T+ M +N
Sbjct: 125 AFLQTGSFFRPISSDDGQSGPRPHCALIDEVHEHKDNKAVEMMRAGTKGRRQALIFMITN 184
Query: 230 -PRRLSGKFYEIFN-----------------------KPLDDWKRFQIDTRTVEGIDPSF 265
+ YE D +K + + +F
Sbjct: 185 SGHDKTSVCYEYHQYGKQLAAGQKTNDAFFAFICSLDDGDDPFKDESCWPKANPSMGHTF 244
Query: 266 HEGIIARYGLD-------SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ D + R ++ + + +
Sbjct: 245 QPEYLREQVEDARGMPSKESLVRRLNFCEWVDAENPWIGGDVWMACEKTFDIAELQGRMC 304
Query: 319 IMGCDIAEEGG 329
G D++ +
Sbjct: 305 YGGLDLSGKRD 315
>gi|38708288|gb|AAR27298.1| terminase large subunit TerL [Lactobacillus phage JCL1032]
Length = 602
Score = 54.5 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/321 (13%), Positives = 81/321 (25%), Gaps = 33/321 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
+ WQ + + I GR GKTTL + L +++ G +
Sbjct: 116 QPWQHFVGGNMFGWVHKETG--LRRFREALIFMGRKNGKTTLESGLADYMVGFDGEHGAN 173
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCS 161
V LANS+ Q + L+ E + P + + + ++
Sbjct: 174 VYFLANSQKQ-SSILFQEAKNMIDSSPWLSDRFRTTRSEIRFPATNGSIVAMSAEKKDKD 232
Query: 162 LGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE 217
Y + G + I + I
Sbjct: 233 GENLHFGVFDEIHEYRDYSLINVMKRSRGTRTQPLIVYITTAGYVLDGPLADMI------ 286
Query: 218 RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
+ ++ + ++ + I G++ Y D
Sbjct: 287 DQGEDCLNNYEDDVDERTFYFLCSLDDKREMDDPRMWVKANPNIGLMDLAGMLGDYKKDR 346
Query: 278 DV------TRVEVCGQFPQQDIDSFIPLNIIEEA-LNREPCPDPYAPLIMGCDIAEEGGD 330
+ F + D SFI +++ N + + G D++E
Sbjct: 347 RSPKEKADWMTKQFNLFAETDELSFISPETLKKNTRNIDLDILEGRQCVGGFDLSETEDF 406
Query: 331 NTVVV---LRRGPVIEHLFDW 348
+ L G V W
Sbjct: 407 TAACLEFPLDDGSVFFLEHSW 427
>gi|226326214|ref|ZP_03801732.1| hypothetical protein PROPEN_00056 [Proteus penneri ATCC 35198]
gi|225205401|gb|EEG87755.1| hypothetical protein PROPEN_00056 [Proteus penneri ATCC 35198]
Length = 564
Score = 54.5 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 53/416 (12%), Positives = 102/416 (24%), Gaps = 61/416 (14%)
Query: 12 EQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLN 68
E + L+W E V+ FF K E P WQ + + +
Sbjct: 36 EAEQRGLVWDVEAVKR----VIDFFAKVLKLNGGEHEGKPFILLPWQCFVIGSIFGWKMT 91
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWA 126
+ +G+G GK+ + + L+ + P V A + Q L+
Sbjct: 92 DGTR---RFRMVYVESGKGSGKSPMAGGVGLYCLVADSEPRAEVYAAATKKDQAM-ILFR 147
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF-V 185
+ + P S + S G + +T S RP +
Sbjct: 148 DAVAMVDQSPA----------------LSQRITKSGGTGKEWNLAYLKTSSFFRPISSDD 191
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIFNKP 244
G + DE + + ++ T+ M +N + Y+
Sbjct: 192 GQSGPRPHCALIDEIHEHKNNTAVEMMRAGTKGRRQALIFMITNSGHDKTSVCYDYHEYG 251
Query: 245 LD-------DWKRFQIDTRTVEGIDP---------------------SFHEGIIARYGLD 276
D F E DP E + G+
Sbjct: 252 RKVAEGTIEDDSFFSYICSLDESDDPFKDESCWGKANPSLGYTFSERYLREQVTQARGMP 311
Query: 277 --SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV 334
+ R Q+ D ++ G D++ +
Sbjct: 312 AKESIVRRLNFCQWVDADNPWINSETWMQCENTFTFDDLQGEECYGGLDLSGTKDLTALA 371
Query: 335 VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
+ ++ W+ D K + + A +++
Sbjct: 372 LYFPSLKRLYVEFWTPKDTLLDRAKTDRVPYDLWVRQGFMHTTPGNAVRYEFVAER 427
>gi|197284809|ref|YP_002150681.1| phage terminase, large subunit [Proteus mirabilis HI4320]
gi|194682296|emb|CAR42063.1| putative phage terminase, large subunit [Proteus mirabilis HI4320]
Length = 577
Score = 54.5 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 51/416 (12%), Positives = 103/416 (24%), Gaps = 61/416 (14%)
Query: 12 EQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLN 68
E + L+W E V+ FF K E P WQ + + +
Sbjct: 49 EAEQRGLVWDVEAVKR----VIDFFAKVLKLNGGEHEGKPFILLPWQCFVIGSIFGWKMT 104
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWA 126
+ +G+G GK+ + + L+ + P V A + Q L+
Sbjct: 105 DGTR---RFRIVYVESGKGSGKSPMAGGVGLYCLVADSEPRAEVYAAATKKDQAM-VLFR 160
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF-V 185
+ + P S + S G + +T S RP +
Sbjct: 161 DAVAMVDQSPA----------------LSQRITKSGGTGKEWNLAYLKTSSFFRPISSDD 204
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIFNKP 244
G + DE + + ++ T+ M +N + Y+
Sbjct: 205 GQSGPRPHCALIDEIHEHKNNTAVEMMRAGTKGRRQALIFMITNSGHDKTSVCYDYHEYG 264
Query: 245 L-----------------------DDWKRFQIDTRTVEGI-----DPSFHEGIIARYGLD 276
D +K + + D E + G+
Sbjct: 265 RKVAEGTIEDDSFFSYICSLDEGDDPFKDESCWGKANPSLGYTFSDRYLREQVTQARGMP 324
Query: 277 --SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV 334
+ R Q+ D ++ G D++ +
Sbjct: 325 AKESIVRRLNFCQWVDADNPWINSETWMQCENTFTFDDLQGEECYGGLDLSGTKDLTALA 384
Query: 335 VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
+ ++ W+ D K + + A +++
Sbjct: 385 LYFPSLKRLYVEFWTPKDTLLDRAKTDRVPYDLWVRQGFMHTTPGNAVRYEFVAER 440
>gi|299532092|ref|ZP_07045486.1| mu-like prophage Flumu protein gp28 [Comamonas testosteroni S44]
gi|298719754|gb|EFI60717.1| mu-like prophage Flumu protein gp28 [Comamonas testosteroni S44]
Length = 470
Score = 54.5 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/348 (10%), Positives = 79/348 (22%), Gaps = 54/348 (15%)
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG--KF 237
PD G + + A + +T
Sbjct: 125 NPDAQAGKRGSRILDEFALHADQ--RKLWAIAYPGITWGGNMELISTHRGSHSFFNSLVR 182
Query: 238 YEIFNKPLDDWKRFQIDTRTV-------------------EGIDPSFHEGIIARYGLDSD 278
++ + + +D + + + D++
Sbjct: 183 EARHGGNPKRISLHRVTLQDALEQGFLFKLQQSLPADAEQQAMDEADYFDFVKNGAADAE 242
Query: 279 VTRVEVCGQFPQQDIDSFIPLNII---EEALNREPCPDPYAP----LIMGCDIAEEGGDN 331
E P D F+ +I E + P L G DI +
Sbjct: 243 SFDQEYMCI-PADDDSKFLEYGLITACEYLGGTDWKRGLQGPFQGRLFCGVDIGRKKD-- 299
Query: 332 TVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYR----PDAIIIDANNTGARTCDYL 387
+ VL + +F + K + D + ID+ G D
Sbjct: 300 -LTVLWVVEQLGDVFYTRHVETMEKMRKSDQEKILWPWFAICDRVCIDSTGLGIGWTDDA 358
Query: 388 EMLGYHVYRVLGQKRAVDLEFCRNR-RTELHVKMADWLEF--ASLINHSGLIQNLKSLKS 444
+ + ++ + + L + +E + + +L+ ++
Sbjct: 359 QD--------KFGEHRIEGVSFTGQVKEALAYPLKGAMEDRKIRIPEDPKIRADLRKVQK 410
Query: 445 FIVPNTG-ELAIESKRVKGAKSTDYSDGLMYTF-AENPPRSDMDFGRC 490
ES D L A N P + ++
Sbjct: 411 VTTSAGNIRFVAESTPD---GHADRFWALALALQAGNSPAAPFEYTSS 455
>gi|257899075|ref|ZP_05678728.1| phage terminase [Enterococcus faecium Com15]
gi|257836987|gb|EEV62061.1| phage terminase [Enterococcus faecium Com15]
Length = 596
Score = 54.5 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/335 (11%), Positives = 81/335 (24%), Gaps = 31/335 (9%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
++ +EI F+ + F + WQ + +
Sbjct: 78 IFDEEIGHRPIRFIEDNC--RPTEGDFDRFIL-QPWQHFIIGSMFGWIHKDTGIRRFREA 134
Query: 79 KGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ GR GKT+L L +++ G +V LAN++ Q + L+ + + + P
Sbjct: 135 LTFV--GRKNGKTSLINGLSAYMLGYDHEQGANVYVLANAKDQA-SILFDKTKEMVKQSP 191
Query: 137 NKHWFEMQSLSL--------HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDTF 184
SL SD + +
Sbjct: 192 RLDKKYKPQRSLIKDEATFSKMEARASDSKKLDGLNTHFAIFDEIHEFINFKLINVIKKS 251
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFL-----TERNANRFWIMTSNPRRLSGKFYE 239
G + I + L E + + +
Sbjct: 252 RGTRRQPLIVYITTAGYVLDGPLMQYYDNALDCLEHLEDGLDERVFYFVAKLDDVSEADD 311
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
N W + + + +D + + F D SF+ +
Sbjct: 312 PRN-----WIKANPNIGLMSFVDLVTDWKTERNSPQERADWITKQFNLFSDIDELSFLDM 366
Query: 300 NIIE-EALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
I + + G D++E +
Sbjct: 367 QTINKNNKIIDWEIMEGEECVGGYDLSETQDFTSA 401
>gi|289828379|ref|ZP_06546277.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
Length = 87
Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 12/96 (12%)
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCR 410
D R + I L ++Y I ID+ G ++ V +
Sbjct: 1 MDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYLNVKDFFPAVREFVYNP--------- 51
Query: 411 NRRTELHVKMADWLEFASLINHS---GLIQNLKSLK 443
N + L +K D + L + + Q+ +++
Sbjct: 52 NVKNALVLKAYDIISHRRLEFDAGHTDIAQSFMAIR 87
>gi|302389564|ref|YP_003825385.1| hypothetical protein Toce_1000 [Thermosediminibacter oceani DSM
16646]
gi|302200192|gb|ADL07762.1| conserved hypothetical protein [Thermosediminibacter oceani DSM
16646]
Length = 527
Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/250 (12%), Positives = 75/250 (30%), Gaps = 28/250 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKG--------AISAGRGIGKTTLNAWLVLWLMS 103
R W F+++VD N + + + R +G TT + LWL+
Sbjct: 18 RLWCKNFVKMVDNKGQEVPFILNEQQLRLLEGLEKYNIVLKSRQLGITTFSIAYCLWLVC 77
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
+P I+ + L+ + + + + +P+++ +++ + +
Sbjct: 78 NKPNITTMILSYNLESTQHI-FERLKAMYYSIPDQYKPKIKRDNKMELFLENGSRVIVKI 136
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF 223
+K R+++ E H + + ++
Sbjct: 137 AGNKEL---GRSFTCE------YIHCSEFAFW---TDYAQEKGLLGLENSLAKNPDSKII 184
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
T+N Y +K +K F + + E Y L + + +
Sbjct: 185 LESTANGLNEFYNIYRKASKGESKYKAFFFNWFENK-------ELFREEYKLAEEWWKAQ 237
Query: 284 VCGQFPQQDI 293
GQ +
Sbjct: 238 NHGQRFSRKD 247
>gi|225419807|ref|ZP_03762110.1| hypothetical protein CLOSTASPAR_06147 [Clostridium asparagiforme
DSM 15981]
gi|225041548|gb|EEG51794.1| hypothetical protein CLOSTASPAR_06147 [Clostridium asparagiforme
DSM 15981]
Length = 686
Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/289 (12%), Positives = 83/289 (28%), Gaps = 22/289 (7%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG K++ + V+ L+ + + + + L+++++ ++ + L F
Sbjct: 306 PGGRGSTKSSFISMEVIDLIMSHEDMHAVVMRQVADTLRSSVYQQILWAIEALNLTDEFR 365
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+P + I + + S + P ++G + +
Sbjct: 366 ATV-----SPMEITRISTGQKIYFRGADDPGKVKSVKVPFGYIGI------LWLEELDQF 414
Query: 203 T-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE-- 259
P+ + + + + + P+ S + P D + V
Sbjct: 415 VGPESVRKIEQSVIRGGDVAYIFKSFNPPKSASNWANKYIKIPKDSRLVTESTYLDVPQK 474
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ F + +SD E G F + I E + + ++
Sbjct: 475 WLGKPFLDEAEFLKETNSDAYENEYMGVANGSGGSVFDNVKIREI---TDDEIAQFDHVL 531
Query: 320 MGCDIAEEGGDNTVVV-----LRRGPVIEHLFDWSKTDLRTTNNKISGL 363
G D R I + +K + T K+ L
Sbjct: 532 NGVDWGWYPDPYAFTRSHYDPARHTLYIWQEYTCNKQSNQQTAEKLIEL 580
>gi|229815293|ref|ZP_04445628.1| hypothetical protein COLINT_02339 [Collinsella intestinalis DSM
13280]
gi|229809073|gb|EEP44840.1| hypothetical protein COLINT_02339 [Collinsella intestinalis DSM
13280]
Length = 474
Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 65/428 (15%), Positives = 123/428 (28%), Gaps = 53/428 (12%)
Query: 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR 105
+ F AP WQ ++V+ L + + + IS R GK+ + +
Sbjct: 30 QYFGAPMPWQPHLLDVM----LATDGDGMYVNSEVGISVPRQNGKSWVVRSRCFDGLM-- 83
Query: 106 PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
G ++ + ++ E+ P + E + L ++ + +
Sbjct: 84 RGEKILYTCHHGDT-SDEMFQEL-----KAPFEDDEEEELRDLLKYVRKTNGKQAIVLNN 137
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER---NANR 222
RT S G +I DEA D+ +L ++ N
Sbjct: 138 GGTIRFTTRTDS--------GGRGKSFDVLIIDEAQELTDMQQAALLPAISAGKMHNPQT 189
Query: 223 FWIMTSNPRRLSGKFYEIFNK--PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
++ T + G + K D + ++ E D + V
Sbjct: 190 IYLGTPPGPKCLGTVFANLRKSILKGDSQMAWMEWGATEIGDKNDRARWYECNPSLGIVL 249
Query: 281 RVE-VCGQFPQQDIDSFIPLN---IIEEALNREPCPDPY-----------APLIMGCDIA 325
++ V + Q D+F ++A P P A + +
Sbjct: 250 ELKAVESECNQMAPDTFARERLGWWADDAEVANPALPPGLWAKREVRKAMAGGKLAFGVK 309
Query: 326 EEGGDNTVV-----VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
T +R GP L+D + TD T L K A+ ID +
Sbjct: 310 FSTDGRTAAISWARAVRGGPSYVELYDVACTDGGTAGISDMLLRNKGEIAAVCIDGKSGA 369
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLK 440
L + V+ A+ + D L+ SL + + +
Sbjct: 370 DALIQRLGDNAFPKKAVITGSPAIVQAAAS--------MLLDELKDGSLGHIASPALDES 421
Query: 441 SLKSFIVP 448
+ +S
Sbjct: 422 AARSVKRD 429
>gi|158425199|ref|YP_001526491.1| phage-related DNA maturase [Azorhizobium caulinodans ORS 571]
gi|158332088|dbj|BAF89573.1| phage-related DNA maturase [Azorhizobium caulinodans ORS 571]
Length = 569
Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/272 (13%), Positives = 71/272 (26%), Gaps = 32/272 (11%)
Query: 22 DEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGA 81
D +K F NF+ W G P P Q + + + +
Sbjct: 18 DPLKADFRNFLYV--VWKHLGLP-----DPTPIQ----YDIAVYLQHG-------PKRSI 59
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I A RG+GK+ + + V WL+ P ++ ++ S+ + + + +H
Sbjct: 60 IEAFRGVGKSWVTSAFVCWLLYCNPDHKILVVSASKIRADDFTTFTLRLIKEMPVLQHLI 119
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ S K + N +
Sbjct: 120 PKPDQRESKVAFDVGPAKASHSPSVKSVGITGQLA----GSRADTIIADDVEIPNNSQTQ 175
Query: 202 GTPDVINLGIL--GFLTERNANRFWIMTSNP--------RRLSGKFYEIFNKPLDDWKRF 251
D ++ + + + ++ T + + D+ +R
Sbjct: 176 AMRDKLSELVKEFDAILKPGGRIIYLGTPQTEQSLYNELPNRGYQVRIWPARIPDEKQRA 235
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
R ID +G A D E
Sbjct: 236 IYGERLAPYIDDLIAKGWKAGASTDPKRFSEE 267
>gi|15894418|ref|NP_347767.1| hypothetical protein CA_C1134 [Clostridium acetobutylicum ATCC 824]
gi|15024053|gb|AAK79107.1|AE007629_13 Phage related protein, YonF B.subtilis homolog [Clostridium
acetobutylicum ATCC 824]
gi|325508547|gb|ADZ20183.1| Phage related protein [Clostridium acetobutylicum EA 2018]
Length = 589
Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 64/439 (14%), Positives = 128/439 (29%), Gaps = 72/439 (16%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R +GKT + ++ L P ++ ++N+ Q ++ N +Q
Sbjct: 89 ARSMGKTFKMSRVLAGLAILYPQNKILIVSNTVRQA-ILTVKYINDLGEENANFAREIIQ 147
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ + D S+ + + G + I++ A
Sbjct: 148 PIKIS-----KDGAKVKFKNGSEIEAMAMN----KDGSNIRGERRK--IIYIDESAWVMS 196
Query: 205 DVINLGILGFLT-----ERNANRFWIM---TSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
VI ++ L N + S+ + Y +K D R
Sbjct: 197 SVIQSVLIPMLRYNRKVVENNRLKGLAFEDFSSKLIETSSAYLKSCDYYQRFKETIQDIR 256
Query: 257 TV------------EGIDPSFHEG---IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ E + + + V +E +F + S+ P ++
Sbjct: 257 DGYKDRFCCALSYKTAVRCGIVEEDFVLEQKKKMPLSVWEMEWNSKFVGETEGSYFPYDL 316
Query: 302 IEEALN-REPCPDP----YAPLIMGCDIAEEGG---DNTVVVL------RRGP---VIEH 344
E + + ++ D+A DN + + G I
Sbjct: 317 TEPCRDFSHVEIQQPKNSMSRYVLSLDVATSEDKKADNACITVIKIVPKNDGTYEKYIVF 376
Query: 345 LFDWSKTDLRTTNNKISGLVEKY-RPDAIIIDANNTGARTCDYL-----EMLGYHV---- 394
+ + L ++ ++ +IIDAN G L + LG
Sbjct: 377 IRTYHGYSLEMLAEQVRITCCRFPNIIKVIIDANAIGEGVVSLLNIPYVDDLGREYPPLI 436
Query: 395 ---YRVLGQKRAVD---LEFCRNRRTE-LHVKMADWLEFASL---INHSGLIQNLKSLKS 444
V ++A++ N++ E + V +LE SL I + + ++ K
Sbjct: 437 KDTIEVSDSRKAINIISAIKADNKKNENMAVHTLLFLENHSLHIPIPSVKIRRQIEEQKI 496
Query: 445 FIVPNTGELAIESKRVKGA 463
I +TG SK G
Sbjct: 497 IIKDDTGTKRKISKEEVGV 515
>gi|261315193|ref|ZP_05954390.1| phage DNA Packaging protein [Brucella pinnipedialis M163/99/10]
gi|261304219|gb|EEY07716.1| phage DNA Packaging protein [Brucella pinnipedialis M163/99/10]
Length = 329
Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 44/348 (12%), Positives = 90/348 (25%), Gaps = 44/348 (12%)
Query: 56 LEFMEVVDAHCLNSVNNPNPE---VFKGAISAGRGIGKTTLNAWLVLWLMSTRPG----- 107
+ + D + + + P I GRG GKT A V + P
Sbjct: 6 RQILAAQDEWLIRARDAQLPPDGDWRVWLIMGGRGSGKTRAGAEWVSGMALGLPPFAGKP 65
Query: 108 -ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ + + + + S LS+ V
Sbjct: 66 SGHIALVGETFNDAREVMVDGPSGILSVSRL-------------------VRPRYEASRR 106
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFW 224
+ + + A DE + P + L + R
Sbjct: 107 RLIWDNGAVATLFSSEDPDSLRGPQFDAAWCDELAKWKNPQETWDMLQFGLRLGDNPRQV 166
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ T+ + + + F + I RY + + R E+
Sbjct: 167 VTTTP---RAVPLLKALLTDRTVSMTHMRTAENAGNLAEGFMQTIARRYA-GTRLGRQEL 222
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLR---- 337
G+ ++ + + IE+ P P A +++ D + + D +V+
Sbjct: 223 DGELVEERPGALWSRDRIEQCFEEN--PPPLARIVVAVDPPASSGKASDACGIVVAGIDA 280
Query: 338 -RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+ + + L + DAI+ + N G
Sbjct: 281 EGVGHVLADESMTMAKPHQWARRAIALYHTHEADAIVAEVNQGGEMVA 328
>gi|92116961|ref|YP_576690.1| hypothetical protein Nham_1408 [Nitrobacter hamburgensis X14]
gi|91799855|gb|ABE62230.1| protein of unknown function DUF264 [Nitrobacter hamburgensis X14]
Length = 422
Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 53/412 (12%), Positives = 108/412 (26%), Gaps = 64/412 (15%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLLP 136
GRG GKT A + + + +E + + VS L++
Sbjct: 39 VGGRGAGKTRAGAEWIRAQALGLAPFAVEAVSRIALVGETEHDAREVMIEGVSGLLAVHA 98
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ D
Sbjct: 99 AHERPAWSPSRKRLE------------------WSNGAVAQAFSADDPESLRGPQFGCAW 140
Query: 197 NDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+DE + ++ G + T P L + +
Sbjct: 141 SDEMAKWRYAEAAFDMLQFGLRLGSQPRQLITTTPRPTALLKRLMADPASVVSRA----P 196
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ P+F +G++ARY + + R E+ G+ + D+ ++E R
Sbjct: 197 TQANAFNLAPTFLQGVMARYA-GTRLGRQELDGEIIEDRPDALWSRALLERC--RVHEAP 253
Query: 314 PYAPLIMGCDIAEEGG---DNTVVV---LRRGPVIEHL--FDWSKTDLRTTNNKISGLVE 365
P +++ D D +V L G ++ + + K L
Sbjct: 254 PLQRIVVAVDPPATSSKRADACGIVAAGLAEGGMVYVIADETVAGVTPALWAAKAIALWR 313
Query: 366 KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--W 423
+ DA++ + N G + + V + + R E + +
Sbjct: 314 RCEADALVAEVNQGGDMVKAVIAEVDAAVPVIPVRATRGKW-----LRAEPVATLYEQGR 368
Query: 424 LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ A + L + +G + S +S D D L++
Sbjct: 369 VRHAGSF--AALEDEMC-----DFALSG---LSS-----GRSPDRLDALVWA 405
>gi|254240379|ref|ZP_04933701.1| hypothetical protein PA2G_01026 [Pseudomonas aeruginosa 2192]
gi|126193757|gb|EAZ57820.1| hypothetical protein PA2G_01026 [Pseudomonas aeruginosa 2192]
Length = 433
Score = 54.1 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 55/418 (13%), Positives = 98/418 (23%), Gaps = 62/418 (14%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
AG G GKT + + P I+ A + Q++ + + E
Sbjct: 27 VAGFGSGKTWVGCSGLAQHAWEWPRINAGYFAPTYAQIRDIFYPTM-------------E 73
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + H Y T S E+P T VG + D S
Sbjct: 74 EVAFDWGLRTRINQANHEVHLFSGSAYRTTIICRSMEKPQTIVGFKVGRSLVDELDVLSL 133
Query: 203 TP--DVINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRFQI 253
I +T+ P F + + + + Q
Sbjct: 134 VKAQQAWRKIIARMRYKVDGLRNRVDVTTTPEGFKFVFQQFVKQLREKPHLQDLYGLVQA 193
Query: 254 DTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
T E + + + ++ Y + + GQF + I
Sbjct: 194 STYDNEANLPDDYIDSLMESY--PPQLIAAYLRGQFVNLTSGT-IYTAYDRTLNASPETV 250
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG--------LV 364
P P+ +G D V V R G + D +I
Sbjct: 251 QPGEPIYVGMDFNVGKMAAVVHVKRLGLPHAVDEIVNGYDTPDMIRQIKERFWLYADGEY 310
Query: 365 EKYRPDAIIIDANNTGARTC-------DYLEMLGYHVYRVLGQKRAVDL-----EFCRNR 412
R I DA+ ++ L+ G+ V D N
Sbjct: 311 RPTRQIRIYPDASGDSRKSVRASETDIALLKQAGFVVSAPAANPPVKDRINSMNAMFCNA 370
Query: 413 RTELHVKMADWLEFASLINHS-GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ E + + + + E + + +
Sbjct: 371 KGE---------RRYRVNPDRCPTYADALEQQVWGTNG------EPDKSADIDHPNDA 413
>gi|330836783|ref|YP_004411424.1| phage protein [Spirochaeta coccoides DSM 17374]
gi|329748686|gb|AEC02042.1| phage uncharacterized protein [Spirochaeta coccoides DSM 17374]
Length = 541
Score = 54.1 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 67/490 (13%), Positives = 139/490 (28%), Gaps = 52/490 (10%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFP---------WGEKGTPLEGFSAP 51
M R + + Q ++ + F+ ++FP W + +
Sbjct: 20 MDRTKAMSVASSQN-EVRSRHEKFRTDIGGFMKYYFPHYIRLEPPSWQRLLFSIFENTQF 78
Query: 52 RS-----W-----QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW-LVLW 100
W Q + V + + + + A+ A R GK+T+ A L+LW
Sbjct: 79 DKRGRPYWIVTEKQARQLSAVHRKEFSHIPHQVDILRGLALCAPREQGKSTVFARLLILW 138
Query: 101 LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC 160
+ V+ + +++ L + ++ + Q S+ + Y
Sbjct: 139 GLIYGYFRFVVLIRSNDALAGQFLDDTMVEFEDNQRLLADYGNQRGSVWKSGQYLLKNGA 198
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+L + E+RPD + + T I I + +
Sbjct: 199 ALVSIGRGAGVRGLVSREKRPDVIIL---DDITTDQDKNNVATLHKIYDWISSAVFGLSK 255
Query: 221 NRFWIMTSNPRRLSGKF----YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI------I 270
N + +I + L W + +G + E
Sbjct: 256 NAVIFTLNTIYNGEDPQSTILKKIVAQELPGWVGVRFSAEIEDGKKALWPEYWPLAALRK 315
Query: 271 ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
R + S +E F ++ + P + G D EG D
Sbjct: 316 KRMEVGSKTYNIEYLSITTDDGTKIFKAEQMLY--VPGTEISIPDYEIAFGVDPNAEGSD 373
Query: 331 NTVVVL--RR----GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+ + + R G V L+ + +++ L Y P I +
Sbjct: 374 DAAIGVLGRHRQTGGFVTFELWYKDYGTINQLVDEMVRLWRVYAPRIIGFENVGFQNVYM 433
Query: 385 DYLEMLGYHVY---RVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKS 441
L+ + + ++G + + E + ++E S +H L +L
Sbjct: 434 KLLQEILMPQHLNLPLIGVEARMSKEAGATM-------IQPFMENGSWRHHMKLKDSLSM 486
Query: 442 LKSFIVPNTG 451
+ P G
Sbjct: 487 QRVLQFPTKG 496
>gi|262047916|ref|ZP_06020862.1| terminase large subunit [Lactobacillus crispatus MV-3A-US]
gi|260571794|gb|EEX28369.1| terminase large subunit [Lactobacillus crispatus MV-3A-US]
Length = 644
Score = 54.1 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 42/335 (12%), Positives = 84/335 (25%), Gaps = 45/335 (13%)
Query: 34 HFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTL 93
F L WQ + +++ + IS GRG GKT +
Sbjct: 93 FKFASIIPDVDLHKPLPLMDWQKFILAMINGWKDANGER---RYTDIHISVGRGQGKTQI 149
Query: 94 NAW----LVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
VL + AN+ Q T L+ V K L + F +
Sbjct: 150 AGIQMCKAVLIDTLNFTNKDFLITANTSDQ-STKLFGYVKKMLEAVIKIEPFASIAKESG 208
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209
++K + + + ++ G D + D
Sbjct: 209 LD--LQTNQIIEKETNNKVWKISYEADKYDSTHNVLAIYDETGALDTYDRMTDITDGQAQ 266
Query: 210 GI------------------------------LGFLTERNANRFWIMTSNPRRLSGKFYE 239
I + N ++ + E
Sbjct: 267 VIPYHQFIKISSAYPDPTSPFHQEQITMQHIMEKDYSREGDNSLCLVWAQDDLDETFKPE 326
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS-DVTRVEVCGQFPQQDIDSFIP 298
+ K + + + + ++ + + + +Q S++
Sbjct: 327 TWEKSNP---LIGLSDEERKRRTDNLIKQRDQGMLTNTLHKFQNKNLNLWLKQSTASYLN 383
Query: 299 LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
L +E+A+N + D MG D + + V
Sbjct: 384 LKDVEKAINDDFKID-GLICYMGFDYSMFSDNTAV 417
>gi|217973759|ref|YP_002358510.1| Terminase [Shewanella baltica OS223]
gi|217498894|gb|ACK47087.1| Terminase [Shewanella baltica OS223]
Length = 581
Score = 54.1 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/385 (9%), Positives = 88/385 (22%), Gaps = 61/385 (15%)
Query: 29 SNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAG 85
+N + FFP + + + P WQ + + + + +G
Sbjct: 64 ANRAISFFPKVLRLSGGDHEGKPFHLLDWQAFIVGSLFGWKDA---DHTRRFRMCYVESG 120
Query: 86 RGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLP---NKHW 140
+G GK+ L + L+ + + A + Q L+ + P +
Sbjct: 121 KGSGKSPLAGGIGLYGLVADGEASAEIYAAATKKDQAM-VLFRDAVSMFRQSPQLSARLK 179
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ ++ + + R S + + + DE
Sbjct: 180 PSGTAQNVWNLAYLEKN-------------SFFRPISSDNGQS-----GPRPHMALIDEV 221
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIFN---------KPLDDWKR 250
+ + ++ T+ M +N + Y K D +
Sbjct: 222 HEHKNNNVVEMMRAGTKGRKQALIFMITNSGHDRTSVCYSYHEYGKAICVGTKEDDSFFA 281
Query: 251 FQIDTRT-------------------VEGIDPSFHEGIIARYGLD--SDVTRVEVCGQFP 289
F E + G+ + R Q+
Sbjct: 282 FICSLDEGDDPINDESCWQKANPSLGHTFTHKYLREQVTQAKGMPAKESIVRRLNFCQWV 341
Query: 290 QQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS 349
+ + + G D++ + + + W+
Sbjct: 342 DSASPWLSADTWTDCEDDFDISELVGEECYGGLDLSGTRDLTALALYFPRVKTLLVEFWT 401
Query: 350 KTDLRTTNNKISGLVEKYRPDAIII 374
D + + I
Sbjct: 402 PKDTLLDRERTDNVPYSSWLRNGFI 426
>gi|329115490|ref|ZP_08244238.1| Putative protein YmfN [Acetobacter pomorum DM001]
gi|326695200|gb|EGE46893.1| Putative protein YmfN [Acetobacter pomorum DM001]
Length = 576
Score = 53.8 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/251 (12%), Positives = 65/251 (25%), Gaps = 33/251 (13%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVI 111
WQ + V + I RG K+TL++ + L++++ PG V
Sbjct: 87 WQCFILTTVFGWLHKKTG--FRRFRRSFIGVPRGNAKSTLSSGVALFMLTADGEPGPEVY 144
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A + Q K ++ + + + DV +
Sbjct: 145 SAATTRDQAK-IVFGDAQAMTRK-----------TPPLASKYGLDVQQRGIISACNDGIF 192
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNP 230
+ + D DE + + +R+ + W +T+
Sbjct: 193 RPLSRDADTQD------GLNIHFGCLDEVHAHKTREVYDVVETGAGKRDQSLIWAITTAG 246
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
SG YE++ ++ D + D +
Sbjct: 247 SNRSGIGYELWTYLEAVLRKVLADWEESPYP-------LKGDQAEDEQFFGIIYT---ID 296
Query: 291 QDIDSFIPLNI 301
D P +
Sbjct: 297 DGDDWTDPASW 307
>gi|188585871|ref|YP_001917416.1| conserved hypothetical protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350558|gb|ACB84828.1| conserved hypothetical protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 530
Score = 53.8 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 49/456 (10%), Positives = 113/456 (24%), Gaps = 105/456 (23%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R +G TTL+ ++L TR ++ + ++ + + + ++ + +P+
Sbjct: 60 SRQLGITTLSCAYSVYLACTRKNVTSMIVSYNLESTQEI-FNKLKSIYNSIPDDE----- 113
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI----INDEA 200
+ P ++ L SK R T H +
Sbjct: 114 --RIKPKELRNNRYELLLENGSKVLVKTAGYKELSRGLTLSFAHLSEYAFWNEWVQTKGL 171
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV-- 258
G + T+N + ++ K +K F +
Sbjct: 172 MGLEQSLMKSDEP----GKGQIIIESTANGLNKFYELFKSAEKGNSKYKPFFFNWIDNKK 227
Query: 259 -------------EGIDPSFHEGIIARYGLDS----------------------DVTRVE 283
+ I+ S D+T E
Sbjct: 228 QFASEYDIAEKWYKSINKGNRLTTKDLTDETSKKLYYEKGANLKQIMWRYWKLQDMTEEE 287
Query: 284 VCGQFPQQDIDSFIPLN----IIEEALNREPCPDPYAPLI-------------------- 319
C ++P +FI E + R P P
Sbjct: 288 FCQEYPSHSEQAFISSQKSIFDTEMIVKRLDNLLPPLPKEELADLPSKLKKYLNNGLDIY 347
Query: 320 -----------MGCDIAEEGGDNTVVVLR-RGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
+ ++++VL G + + + ++ L +
Sbjct: 348 NRPKRERHFAGVDVASGSGADYSSIIVLNKDGEQVASFYRND-VPVHEFAEIVNELGRYF 406
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV--------- 418
I+ N+ G + L + K + + ++ +
Sbjct: 407 SYAYTCIERNSYGLPLIERLRERH---QYMNLYKMKTFDQRGKKKKQLGWLTTNASKSIM 463
Query: 419 --KMADWLEFASL-INHSGLIQNLKSLKSFIVPNTG 451
+ + E + IN ++ ++ + +TG
Sbjct: 464 ITDLKELFEKGLININCQRTLEEMRIFEVREDGSTG 499
>gi|239502405|ref|ZP_04661715.1| putative phage terminase [Acinetobacter baumannii AB900]
Length = 427
Score = 53.8 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 52/350 (14%), Positives = 92/350 (26%), Gaps = 38/350 (10%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + + P + + A + Q++ + + + W
Sbjct: 24 AFVAGFGSGKTWVGCSSLCDKSWSFPKVPLGYFAPTYPQIRDIFFPTIDEV-----AFDW 78
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + Y + S E+P+T VG + + D
Sbjct: 79 GLKTK--------IYESNKEVDLYYGRQYRSTIICRSMEKPNTIVGFKIGHALIDELDVM 130
Query: 201 SGTP--DVINLGI-------LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+ I G L + K + + +
Sbjct: 131 TKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTHEQFVKEANLSDAKRALYGMI 190
Query: 252 QIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T E + + + Y + + GQF + P + + +
Sbjct: 191 QASTYDNEVNLPDDYIASLFESY--PPQLISAYLKGQFVNLTSGAVYP-DFDRTLNHTDE 247
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
P L++G D V V+R G D T + L+EK+
Sbjct: 248 EIRPNEALLIGMDFNVLKMAAVVYVIRDGKPRALDELVGVRDTPTMADL---LIEKFPNH 304
Query: 371 AIIIDANNTGARTCDY---------LEMLGYHVYRVLGQKRAVDLEFCRN 411
+ I + G T L G V D N
Sbjct: 305 EMTIIPDAAGQATSSKKSSESDHAILRQKGLRVEVNSTNPNIKDRINAVN 354
>gi|167647445|ref|YP_001685108.1| hypothetical protein Caul_3483 [Caulobacter sp. K31]
gi|167349875|gb|ABZ72610.1| protein of unknown function DUF264 [Caulobacter sp. K31]
Length = 453
Score = 53.8 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 60/404 (14%), Positives = 109/404 (26%), Gaps = 62/404 (15%)
Query: 85 GRGIGKTTLNAWLVLWLM-STRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GKT + L PG + I + + ++ T+ S ++
Sbjct: 69 GRGGGKTYAASKGSNVLAEEVFPGGTGILVGATVKDVRDTMIEGESGIIATARPGF---- 124
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ D+ D DE
Sbjct: 125 --------------VPHYNKHDNVLIWPNGSKALIRTADNPEDIRGPTVNWAWADELVKW 170
Query: 204 -PDVINLGILGFLTE-RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
+ + + I+T+ P++ +I + P + + +
Sbjct: 171 RSEKSWDNLNRCVRNLHENGTKIIVTTTPKKAKQWIKDIESLP--GTIVSRASSLDNPHM 228
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-----EPCPDPYA 316
D ++ EGI S R E+ G++ + IEE R E
Sbjct: 229 DAAYLEGIRREAETGSARAREEIFGEWIE-GDGELWTEKSIEEMRQRPSVSLEVMAKSMD 287
Query: 317 PLIMGCDIAEEGGDNTVVVLRR---GPVIEHLFDWSKTDLRTTNNKISGLVEKY-RPDAI 372
+ D + D T ++L G V S ++ ++I L + Y +P I
Sbjct: 288 RRYISVDPSSGKHDETGIMLMGKKAGRVYVLADFTSGGNINQWTDEIVQLAKSYLQPGDI 347
Query: 373 IIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS---- 428
I+ N A + LE + V + +
Sbjct: 348 ILLEVNMNAAAQNVLEQKDRSLRIVPVTATRSK-----------WHRAEEAFSHCQSGHV 396
Query: 429 LINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
+ H+ L L+ + E K+ S D D
Sbjct: 397 VFWHTHPKLEL-QLREWEP--------EMKK-----SPDRGDAF 426
>gi|150390597|ref|YP_001320646.1| hypothetical protein Amet_2837 [Alkaliphilus metalliredigens QYMF]
gi|149950459|gb|ABR48987.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
Length = 519
Score = 53.8 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 48/456 (10%), Positives = 117/456 (25%), Gaps = 110/456 (24%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I R +G +TL L ++ T+P + + L+ S ++ ++ + +P+
Sbjct: 62 ILKSRQLGFSTLACGLSVYTACTKPNTTSLLLSYSIDSA-NGIFDKLKQIYYDMPDVLKP 120
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + + + + +K T + + +
Sbjct: 121 ALHNNNKKELKFENGSKIVISTCGNKDV-ARGLTLNGIVHISEMAFMKETI--------- 170
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
+ L I ++ T+N +F+E ++ +K F +
Sbjct: 171 ---EKQLLAIEQAVSTDG-IIIVESTANGLNFFNQFWEKAENQVNMYKPFFFSWIEDRVM 226
Query: 262 DPSFHEGIIARY--------------GLDSDVTRV--------------------EVCGQ 287
E + + G + D+ + +
Sbjct: 227 FVEEIEQFVEVWKDRHGTLPSVDELEGEELDLYEQGATIEQLVWRRLKISNSSLEQFKQE 286
Query: 288 FPQQDIDSFIPLN----IIEEALNR----------------------------EPCPDPY 315
FP ++F+ + R P
Sbjct: 287 FPSNSTEAFLTTGNGIFDVNYIAERLRYINKHIAKPKDLPSSLKIGYGKSFLMWERPRVG 346
Query: 316 APLIMGCDIAEE-GGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
G D +E G D +VV + G + + + + Y +
Sbjct: 347 MKYYCGVDASEGLGQDYSVVEVVDSEGNQVAEYRSNTIKPY-KFAEVVDAIGRYYNKAYL 405
Query: 373 IIDANNTGARTCDYLE---------------MLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+++ ++G D L G ++ + N
Sbjct: 406 VVEKASSGHSVLDRLRHDYKYLNMHKHKEYDARGRKKKKIGFNTTSQTKTMIIN------ 459
Query: 418 VKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGEL 453
+ + +E L+ +S + V + G++
Sbjct: 460 -DLVEAIETGGLLINSKHVLEEM---KVFVADGGKM 491
>gi|290960848|ref|YP_003492030.1| phage terminase large subunit [Streptomyces scabiei 87.22]
gi|260650374|emb|CBG73490.1| phage terminase (large subunit) [Streptomyces scabiei 87.22]
Length = 598
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 34/238 (14%)
Query: 51 PRSWQ-LEFMEVVDAHCLNSVNNPN--PEVFKGAISAGRGIGKTTLNAWLVLWLMST--R 105
P WQ + V + + + R GK+TL+ L ++L
Sbjct: 101 PDPWQVAWIIAPVFGWVRFDADADMYVRIITDLYVDVPRKNGKSTLSGGLAIYLTCADGE 160
Query: 106 PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
PG VI A ++ Q ++ + + P +L H P+ ++H G
Sbjct: 161 PGAQVIAAATTKQQA-GYVFTPIRQLAERAP--------ALKGHVKPYRGKIIHPKSGSY 211
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
+ +++ H + DE D + ++ T +
Sbjct: 212 FEVIASVA-----------DAQHGANLHGAVIDELHVHKDPEMVEVIETGTGSRRQPLIV 260
Query: 226 MTSN---------PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
+ + R + ++ L D + + + DP A
Sbjct: 261 IITTADSGKPETIYNRKRTRIEQLARGVLSDPSVYGVVWAVPKDADPFVEATWRAANP 318
>gi|239504148|ref|ZP_04663458.1| putative phage terminase [Acinetobacter baumannii AB900]
Length = 413
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 44/344 (12%), Positives = 90/344 (26%), Gaps = 26/344 (7%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + P + + A + Q++ + + + W
Sbjct: 7 AFVAGFGSGKTWVGCSSLCNKAWEFPKVPLGYFAPTYPQIRDIFFPTIEEV-----AFDW 61
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
++ D+ + + +M + + + + +
Sbjct: 62 G--LKTKVYETNKEVDIYYGRQYRTTIICRSMEKPATIVGFKIGHALIDELDVMAMTKAQ 119
Query: 201 SGTPDVINLGIL---GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
+I G L + K + Q T
Sbjct: 120 QAWRKIIARMRFKQAGLLNGIDVATTPEGFKFTYEQFVKEANKSEAKRKLYGMIQASTYD 179
Query: 258 VE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
E + + + Y + + GQF + P + + +
Sbjct: 180 NEANLPDDYISSLYESY--PPQLISAYLRGQFVNLTSGAVYP-DFDRVLNHTDEEIKKGE 236
Query: 317 PLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
PL++G D V V+R G + +R T + E++ I +
Sbjct: 237 PLLIGMDFNVLKMAAVVYVIREG---KPRALDELVGVRDTPTMCQLINERFPDHDITVIP 293
Query: 377 NNTGARTCDY---------LEMLGYHVYRVLGQKRAVDLEFCRN 411
+ +G T L+ G+ V D N
Sbjct: 294 DASGQATSSKNFSESDHAILKKNGFKVEVNGVNPGIKDRITAVN 337
>gi|94971392|ref|YP_593440.1| hypothetical protein Acid345_4366 [Candidatus Koribacter versatilis
Ellin345]
gi|94553442|gb|ABF43366.1| hypothetical protein Acid345_4366 [Candidatus Koribacter versatilis
Ellin345]
Length = 496
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/358 (12%), Positives = 99/358 (27%), Gaps = 62/358 (17%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
+ + R +G TT A RPG + +A+ +T + + V +++ LP
Sbjct: 76 RRNIVLKARQLGITTYVASRFFLSTIMRPGTVTVQVAHDQTAAEEI-FRIVHRFVENLPE 134
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + S + +DS + ++ + HN +
Sbjct: 135 EMRKGALTTS-----RLNTRQIVFPKLDSAYLVESA---ADVNAGRGLTIHNLH-----C 181
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-NKPLDDWKRFQIDTR 256
E + P + + ++ S P G FY+ + + + +
Sbjct: 182 SEVARWPGDAAEVLASLRAAVPKHGEIVLESTPNGAGGCFYDEWQHAEEKGYTQHFFPWW 241
Query: 257 TVEGIDPSFHEGIIARY----------GLDSDVTRVEVCG---------------QFPQQ 291
+ ++ + R E+ +
Sbjct: 242 WEKSYTIGHRAEELSPEEESLVGRYGLSREQIAFRRELQFNFGKLARQEYAETPEECFLA 301
Query: 292 DIDSFIPLNIIEE---------------ALNREPCPDPYAPLIMGCDIAEEGGD-----N 331
+ +++IE+ + P ++G D A G +
Sbjct: 302 SGECVFEVDVIEKRLAELRGPVETRENGRIETYYPPVRGREYVIGVDPAGGGSEGDYAAA 361
Query: 332 TVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
V+ G L +++S L +Y + ++ NN G LE
Sbjct: 362 QVIERSTGLQCAELRGHY--TPVELASRVSQLGREYNDALVAVERNNHGCAVLVCLEQ 417
>gi|313885555|ref|ZP_07819305.1| putative phage terminase, large subunit [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619285|gb|EFR30724.1| putative phage terminase, large subunit [Eremococcus coleocola
ACS-139-V-Col8]
Length = 470
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/346 (13%), Positives = 95/346 (27%), Gaps = 45/346 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + ++ + A + + R GKT + L +W + G++++
Sbjct: 42 EWQEQLLKPIMAIDEEGLWQHQKFGYSI----PRRNGKTEIVYILEIWAL--EHGLNILH 95
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A+ + ++ + ++ K+ + + L
Sbjct: 96 TAHRISTSHSS-FEKMKKYFESM------GYVEGEDFASIKAKGQERIELLKTDGIIQFR 148
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE-RNANRFWIMTSNPR 231
RT S + F ++ DEA + +++ N T
Sbjct: 149 TRTSSGGLGEGFD--------LLVIDEAQEYTIEQESALKYTVSDSSNPMTVMCGTPPTP 200
Query: 232 RLSGKFYEIFNKP----LDDWKRFQIDTRTVEGIDPSFHEGIIARY-------------- 273
SG + + K + + + E D E
Sbjct: 201 VSSGTVFTDYRKKVLFGQSKYSGW-AEWSVTEMTDIHDVEAWYECNPSMGYHLNERKIEA 259
Query: 274 --GLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
G D V+ G +P + S I E + + P + + I E
Sbjct: 260 ELGEDKLDHNVQRLGYWPTYNQKSAISETEWKELKVTQLPKLVSKLSVGIKFGIDGENVA 319
Query: 331 NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
++ I + +R N + + K ++ID
Sbjct: 320 MSIAAKTENDKIF-IEAIDCQSVRNGNQWLIDFLTKADIQTVVIDG 364
>gi|149882818|ref|YP_001294797.1| probable terminase [Microbacterium phage Min1]
gi|148763449|gb|ABR10467.1| probable terminase [Microbacterium phage Min1]
Length = 530
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 58/482 (12%), Positives = 119/482 (24%), Gaps = 68/482 (14%)
Query: 17 DLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPE 76
+W+ + F L+ P WQ + H L
Sbjct: 9 PRVWTKPLCELTPQTSRGFDVIEFAEDVLKVCLFP--WQKWLL----IHMLELDAFGRLR 62
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI---------SVICLANSETQLKTTLWAE 127
K + GR GKT + A L + + G ++ A + + W +
Sbjct: 63 FRKALVIVGRQNGKTLIAAVLAAYWLYVDAGRWPDQLPEQDFIVVGAAQKLDIAMKPWRQ 122
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
V +W P+ + + ++ + + P TF G
Sbjct: 123 VRRW--GAPDDPKVGIARDRVPDLQAFTYPPR----TTNGETELRTHGGAAYLPRTFEGA 176
Query: 188 HNTYGMAIINDEA-SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
+I DE I + ++ + S ++ +
Sbjct: 177 RGQSAARLILDELREQYDYEGWSAIEKSANAMFDSLLVAFSNAGTKRSRVLRDVRQIGHE 236
Query: 247 -----DWKRFQIDTRTVEGIDPSFHEGIIARYG--------------------LDSDVTR 281
+ + F + + +V R
Sbjct: 237 GVDDRETQWFIAEWSAEPDASLDDERAFAQANPSAGYLAGMTIAGLMRAAAEAKEKNVER 296
Query: 282 VEVCGQFPQQDIDSFIPLNII-----EEALNREPCPDPYAPLI-MGCDIAEEGGDNTVVV 335
+EV GQ+ +D+FI + A P+ + + V
Sbjct: 297 IEVLGQWVTAKVDNFIDSEEWKSRHRDVASIFARIPNGARTVWAIDMSHDRRTTWLAAAV 356
Query: 336 LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
L +T + L ++ + + A D+L+ L +
Sbjct: 357 LTEDGNPFVTVRVKRTGWAWVVPTLIELAQQSGHREVALQAKGV--PAMDFLKPLQDAEF 414
Query: 396 RVLGQKR-----AVDLEFCRNRRTELHVKMADWLEFASL----INHSGLIQNLKSLKSFI 446
V G+ A+D ++ D + L + ++S+
Sbjct: 415 EVNGRVSGFIVHAIDWAGF----ALATGRIRDRVRDGELVLVPQPDVDMAVEGAVVRSYA 470
Query: 447 VP 448
Sbjct: 471 EN 472
>gi|282878109|ref|ZP_06286910.1| phage terminase, large subunit, PBSX family [Prevotella buccalis
ATCC 35310]
gi|281299767|gb|EFA92135.1| phage terminase, large subunit, PBSX family [Prevotella buccalis
ATCC 35310]
Length = 423
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/377 (9%), Positives = 97/377 (25%), Gaps = 47/377 (12%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV--LWLMSTRPGI---SVICLANS 116
+ H + N + F I+ GR GK+ + + L T ++ +
Sbjct: 2 IKTHKVYYPIYANKDKFIILITGGRASGKSHFVSSFLERLTFEMTPVDKIVHQILYTRYT 61
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
++ E + L + +F + S +T
Sbjct: 62 MVSANISIIPEFLEKAELDGTQKYFRST-----------RSDVTNRMTGSTVMFRGLKTS 110
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
S + H ++++ + I+ + ++ + NP +
Sbjct: 111 SGNQTAKLKSIHGI-TTFVVDEAEEWVSEKEFETIMLSIRQKGIQNRIFIIMNPTDNNHW 169
Query: 237 FYEIFNKPLDDW-----------------KRFQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
Y+ F + +E + F + + +
Sbjct: 170 VYKRFIENTHKEVMYDGIPVQISTHPNVLHIHTTYLDNLENLSQEFINEVEDMKANNPEK 229
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
V G++ + + + + + +G D + ++
Sbjct: 230 YAHTVMGRWADVAEGAVFKHIGVVKEFPKWCK-----KVAIGLDFGYTNDVSAAMMCGMI 284
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
++ + +++ I L +R + + + + G +Y V
Sbjct: 285 DDNLYVDELFYRTNMLSSDLIKAL---HRYEMKVFSDSADPR-LVQEIHNGGIKIYPVEK 340
Query: 400 QKRA----VDLEFCRNR 412
+ +D N
Sbjct: 341 GAGSIIAGIDKMKSLNI 357
>gi|154247629|ref|YP_001418587.1| hypothetical protein Xaut_3704 [Xanthobacter autotrophicus Py2]
gi|154161714|gb|ABS68930.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
Length = 446
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 52/461 (11%), Positives = 118/461 (25%), Gaps = 65/461 (14%)
Query: 37 PWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
P E+ L G + ++ + + + P + I AGRG GKT A
Sbjct: 18 PVAERARVLAGLTKKQA--EQLLWDWKFWARPNQLPPPGDWLTWLILAGRGYGKTRTGAE 75
Query: 97 LVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHP 150
V ++ + +A + + + S LS+ P +
Sbjct: 76 WVRSVVCGATPLSRGILGRIALVAETAADARDVMVEGESGILSVHPKAFRPLYEPSKRRL 135
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVIN 208
+ DE +
Sbjct: 136 T------------------WPNGAVATLYNAVEPDQLRGPQHDGAWCDELAKWRYAGETW 177
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
+ L + R + T+ + + +F
Sbjct: 178 DQLQFGLRLGDKPRQVVTTTP---RPIPVLKQIIAAGTSRVTRGSTHENRANLASTFLAE 234
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE- 327
++ +Y + + R E+ + + ++++ ++R P +++ D +
Sbjct: 235 VVKKY-EGTRLGRQELNAEILDDVPGALWTRDMLD--MSRVGFPPDLVRVVVAVDPSGTK 291
Query: 328 --GGDNTVVVLR------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
D + + G K + + +++ D +I + N
Sbjct: 292 GAEDDGDAIGIVAAGCGVDGRAYLLEDASCKLPPAGWGRRAIEVFKRWDADRLIAERNFG 351
Query: 380 GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLEFASLINHSGLIQ 437
GA + + V ++ R E + + + L
Sbjct: 352 GAMVEHVIRSIDPDV---SFREVTASRGKVA--RAEPIAALYEQKKVSHVGSFPD--LED 404
Query: 438 NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+ S +G + GA S D +D ++ E
Sbjct: 405 QMCS-----FTPSGYI--------GAGSPDRADAAVWALTE 432
>gi|24374493|ref|NP_718536.1| phage terminase large subunit [Shewanella oneidensis MR-1]
gi|24349075|gb|AAN55980.1|AE015735_14 conserved hypothetical protein [Shewanella oneidensis MR-1]
Length = 581
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/346 (10%), Positives = 81/346 (23%), Gaps = 59/346 (17%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLNSVNNPNPE 76
W +F FP + + + P WQ + +
Sbjct: 59 WDLAAANRAISF----FPKVLRLSGGDHEGKPFNLLDWQAFIVGSLFGWKDADGTR---R 111
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSL 134
+ +G+G GK+ L A + L+ + + A + Q L+ + ++
Sbjct: 112 FRMCYVESGKGSGKSPLAAGIGLYGLVADGEASAEIYAAATKKDQAM-VLFRDAVSMVNQ 170
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
P LS + +L +K+ + G
Sbjct: 171 SP--------QLSSRLKKSGTGQSVWNLAYLAKNSFFRPISSD-------NGQSGPRPHM 215
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIFN---------KP 244
+ DE + + ++ T+ M +N + Y K
Sbjct: 216 ALIDEVHEHKNNNVVEMMRAGTKGRKQALIFMITNSGHDRTSVCYSYHEYGKAICAGTKE 275
Query: 245 LDDWKRFQIDTRT-------------------VEGIDPSFHEGIIARYGLD--SDVTRVE 283
D + F E + G+ + R
Sbjct: 276 DDSFFAFICSLDEGDDPINDESCWQKANPSLGHTFTHKYLREQVTQAKGMPAKESIVRRL 335
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
Q+ ++ + + G D++
Sbjct: 336 NFCQWVDSASPWLSADTWMDCEDDFDISELYGEECYGGLDLSGTRD 381
>gi|240851102|ref|YP_002972504.1| phage terminase large subunit [Bartonella grahamii as4aup]
gi|240268225|gb|ACS51813.1| phage terminase large subunit [Bartonella grahamii as4aup]
Length = 453
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 43/359 (11%), Positives = 90/359 (25%), Gaps = 39/359 (10%)
Query: 84 AGRGIGKTT----LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT ++A + ++C + L + E+ + + P
Sbjct: 39 GGRGSGKTRSFALMSAVVGYRHGMAGERGIILCARQFQNSLNESSLEEIKRAIESYP--- 95
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+Y D + +G DE
Sbjct: 96 ---------FLQDYYDIGDKYIKSKDGRIVYVFAGLDRNIASIKSMG----RVFLCWVDE 142
Query: 200 ASGTPDVINLGILGFLTERNANR---FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
A + ++ L E + W+ + + N K +I+ R
Sbjct: 143 AEPVTETAWQTLIPTLREEGKDWNAELWVTWNPCYENAPVEKRFRNVDNPHIKGAEINWR 202
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ + + G++ Q ++ ++E + P
Sbjct: 203 DNPQFPEKLNRDRMDDLQQRPEQYNHIWEGEYLQAVQGAYYQKCLLEAEMEGRITTVPRD 262
Query: 317 P---LIMGCDIAEEG--GDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P + + DI G D T + + + G I L + + + Y
Sbjct: 263 PLMQVRIFWDIGGTGAKADATALWVAQFIGREIRVLDYYEAQGQPLSEHVGWVFQRGYEK 322
Query: 370 DAIIIDANNTGARTC------DYLEMLGYHVYRVLGQKRAVDLEFCRNRRT---ELHVK 419
+++ + L+ G+ + Q R L
Sbjct: 323 ALMVLPHDGATKDRVYNVSFESALQQAGFQTKVIPNQGTGAVKMRIEAVRRLFPALWFN 381
>gi|227549612|ref|ZP_03979661.1| gp2, terminase [Corynebacterium lipophiloflavum DSM 44291]
gi|227078304|gb|EEI16267.1| gp2, terminase [Corynebacterium lipophiloflavum DSM 44291]
Length = 540
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 43/315 (13%), Positives = 75/315 (23%), Gaps = 46/315 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + H L + N + + R GKT L L LW + V+
Sbjct: 42 PWQKWVL----IHGLELLPNGEFRFKRVIVEVARQNGKTLLMVILGLWRIFQFGASRVLS 97
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A S + TL + +++ + Y+ + +
Sbjct: 98 AAQSLGDAEDTLDEAFALAAWNPVLRYFLPDNPRAEEEDDEYNGAYRSRANGKAAMELAI 157
Query: 173 CRTYS-----------EERPDTFVGHHNTYGMAIINDEA-SGTPDVINLGILGFLTERNA 220
+ G + + DE I+ R
Sbjct: 158 APRPEVLDLAGKMPIWSLAVTSRKGGRSKSVDLALLDELREHLDWDAWNAIVPTSRNRPR 217
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDD--------WKRFQIDTRTVEGIDPSFH------ 266
++ W ++ S F + L + D
Sbjct: 218 SQVWGFSNAGDLRSVVFRSLRESALKQIDDGTTAATQTAFFSYSAHPDADVLDPAAHAQA 277
Query: 267 ----------------EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
E A G + R E Q+ I L + E +
Sbjct: 278 NPSMGYSNLTADSIMAEAKDAIAGDNEPGFRAECLCQWQDVLTPGKISLKLWESLTDTTS 337
Query: 311 CPDPYAPLIMGCDIA 325
P A + +G D+A
Sbjct: 338 ARAPGAEVFVGIDVA 352
>gi|30062201|ref|NP_836372.1| hypothetical protein S0695 [Shigella flexneri 2a str. 2457T]
gi|309786465|ref|ZP_07681089.1| phage terminase large subunit domain protein [Shigella dysenteriae
1617]
gi|30040446|gb|AAP16178.1| hypothetical bacteriophage protein [Shigella flexneri 2a str.
2457T]
gi|308925653|gb|EFP71136.1| phage terminase large subunit domain protein [Shigella dysenteriae
1617]
gi|313649746|gb|EFS14170.1| phage terminase large subunit domain protein [Shigella flexneri 2a
str. 2457T]
gi|332761021|gb|EGJ91309.1| phage terminase large subunit domain protein [Shigella flexneri
4343-70]
gi|332761177|gb|EGJ91463.1| phage terminase large subunit domain protein [Shigella flexneri
2747-71]
gi|332763392|gb|EGJ93632.1| phage terminase large subunit domain protein [Shigella flexneri
K-671]
gi|333008020|gb|EGK27496.1| phage terminase large subunit domain protein [Shigella flexneri
K-218]
gi|333021447|gb|EGK40697.1| phage terminase large subunit domain protein [Shigella flexneri
K-304]
Length = 77
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 443 KSFIVPNTGELAIESKR---VKGAKSTDYSDGLMYTFAE 478
G + +ESK+ + S + +D + FA
Sbjct: 24 PHRDFDRNGRVMVESKKDLAKREIPSPNVADAFIMAFAP 62
>gi|208429857|ref|YP_002265410.1| large terminase [Clostridium phage 39-O]
gi|190683340|gb|ACE81984.1| large terminase [Clostridium phage 39-O]
Length = 425
Score = 53.8 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 54/437 (12%), Positives = 121/437 (27%), Gaps = 51/437 (11%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + V H N + K GRG K++ + ++ L+ + +
Sbjct: 21 DLLYDVMEH------NHTHYMLK----GGRGSTKSSFVSKVIPLLIMANNDCHAVIVRKV 70
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
LK +++ ++ ++ L +F++ L ++ LG D T
Sbjct: 71 GQTLKGSVYNQMIWSINDLGLNGYFKVYKSPLKIVYTPTNQEIIFLGCDDP-MKAKGITV 129
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLS 234
R + +E + I F+ + N + + P+ +
Sbjct: 130 PFGRIG-----------IVWYEELDQFNGMEEIRSMTQSFIRKNGDNWVFYTFNPPKSKN 178
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
E +D TV + F + + + E G+
Sbjct: 179 NWVNEEQLIDREDRLIHHSTYLTVPSDWLGQQFIIEAEHLKNVKEEAYKHEYLGEVTGTG 238
Query: 293 IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT---VVVLRRGPVIEHLFDWS 349
+ F + + + + G D T + I
Sbjct: 239 GNVF---DNVIIREITKEEINNMEEFEYGVDFGFSIDPATWCKIHYKNNKLYIIDEIYEQ 295
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ +KI I+ D+ + ++ + G ++ + + D
Sbjct: 296 GLSNKKLTDKILEKEPNIYKKPIVADSADP--KSISEMRGYGLNMQKAKKGPDSRDF--- 350
Query: 410 RNRRTELHVKMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD 467
T ++M D ++ N + + + + + G SK G
Sbjct: 351 ----TYKFLQMLDEIVIDKKRTPNAA---KEFIGYE-YEMNKDG--QFISKYPDGNDH-- 398
Query: 468 YSDGLMYTFAENPPRSD 484
Y D + Y + R
Sbjct: 399 YIDAVRYAIMDIARRKQ 415
>gi|260433583|ref|ZP_05787554.1| putative phage terminase, large subunit [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417411|gb|EEX10670.1| putative phage terminase, large subunit [Silicibacter
lacuscaerulensis ITI-1157]
Length = 504
Score = 53.4 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 66/482 (13%), Positives = 125/482 (25%), Gaps = 90/482 (18%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAI---SAGRGIGKTTLNAWLVL------WLMSTRPGISV 110
E + + + S GRG GK+TL+A L L W S +
Sbjct: 24 EQIKLAPYQNKFIDGAYGPGINVGVLSVGRGNGKSTLSAILALGELVGAW--SDAKEREI 81
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ A ++ Q W V LP + + D ++
Sbjct: 82 LIAAKTQQQA-QICWHYVVSLSKTLPEDVQAAITIRR---------QPRFEIQFDDENGP 131
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP----DVINLGILGFLTERNANRFWIM 226
+ R S + T I DE P D + +L L++R+ I
Sbjct: 132 HILRAISADG----KSALGTSPTLAILDERGHWPLAQGDELEAALLTGLSKRDGKALIIS 187
Query: 227 TSNPRRL-----------SGKFYEIFNK----PLDDWKRFQID-----TRTVEGIDPSFH 266
TS + G + + P DD I +
Sbjct: 188 TSASNDMHPFSLWLDREAPGVYRQEHRPEPGLPADDVASLIIANPGTKYGIGPSLKRLKD 247
Query: 267 EGIIARYGLDSDVTRVEVCGQFPQQDIDS---FIPLNIIEEALNREPCPDPYAPLIMGCD 323
+ +A S ++R + + + D+ I L+ + + P P ++G D
Sbjct: 248 DAALAIERGGSALSRFRLLSRNERVQEDNRDILISLDDWLKC-ETDALPPKSGPCVIGLD 306
Query: 324 IAEEGGDNTVVVLR-RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG-- 380
+ + +E + + + + Y + G
Sbjct: 307 LGGSASMSAAAYYWPETGRLECFGTFPSKPDLDARGQSDAVGDLYCQMHQRRELTVMGDR 366
Query: 381 -ARTCDYLEMLGYHVYRVLGQKRAVDL----------EFCRNRRTELHVKMADWLEFASL 429
D+L+ + D + N R +
Sbjct: 367 TVPIVDWLDSVLQRAVAENVACIVADRFKQAEVGEALDKAGN-RAPVVW------RGMGF 419
Query: 430 INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGR 489
+ S ++ L + ++ ++S + FAE D
Sbjct: 420 KDGSEDVERL---RRYVFDG----KVKSAESYLLRH---------AFAETVVMIDPAGNA 463
Query: 490 CP 491
P
Sbjct: 464 KP 465
>gi|294789839|ref|ZP_06755067.1| phage terminase, large subunit, PBSX family [Simonsiella muelleri
ATCC 29453]
gi|294482221|gb|EFG29920.1| phage terminase, large subunit, PBSX family [Simonsiella muelleri
ATCC 29453]
Length = 413
Score = 53.4 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/292 (9%), Positives = 72/292 (24%), Gaps = 28/292 (9%)
Query: 90 KTT-LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
K+ + L +W + + ++C + +K + AE+ ++ S +
Sbjct: 42 KSFNVAKMLAIWGYA--ETLRILCTREFQNSIKESFHAELKAAIA-----------SEAF 88
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
+ V ++ R + + +EA +
Sbjct: 89 LENAYDVGVDFIRGKNGTEFLFKGLR----NNTQSIKSL--ANIDICVIEEAEDISESAW 142
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG 268
+ + + + I R + N P +I+ E
Sbjct: 143 EVLEPTIRAPKSEIWVIWNPKQRGSATDTRFRQNTP-PRSCIVEINHSDNPFFPDVLDEQ 201
Query: 269 II-ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
+ LD G + +Q A+ + G D
Sbjct: 202 RKYQQKVLDPARYAWIWEGAYYEQSDAQVFAGK---YAVREFTPQSDWNGAYFGLDFGFS 258
Query: 328 GGDNTVVVLRRGPVIEHLFDWS---KTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ ++ + +L T + ++ + I D+
Sbjct: 259 QDPTAAIECYVADNCLWIYREAGGVGLELDDTAGCLKSIMPEIDKHIIRADS 310
>gi|206563738|ref|YP_002234501.1| putative phage terminase large subunit [Burkholderia cenocepacia
J2315]
gi|198039778|emb|CAR55749.1| putative phage terminase large subunit [Burkholderia cenocepacia
J2315]
Length = 436
Score = 53.4 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 89/363 (24%), Gaps = 68/363 (18%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ GR GK+ + +L + G V A L T + E+
Sbjct: 27 VRCGRRYGKSYILRYLAGDALL--KGQLVGVYAPQFATL-TKTYNEIY------------ 71
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
V+ S ++ + ++ DE +
Sbjct: 72 ----------GDIEPVVTGSNKGHLIESKVTGGGIDFWSLESGLFGRGREYDLLLFDETA 121
Query: 202 GTPDVINLGILGFL-----TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK------- 249
T D + T F T LS FY + W
Sbjct: 122 FTKDGTLEIYRDAISPVVATRPGFRMFSFSTPLVMDLSNFFYALHEHKDYKWNPKIGADN 181
Query: 250 -----RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP------ 298
+ +D + G + S R E+ G+F S P
Sbjct: 182 YERFKVHHRPSWCNPLVDDKWLRGEYRKRSALS--WRQEIEGEFVDWSGISLFPNLNKPV 239
Query: 299 ---------LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS 349
+I+ A+ D A + +G + ++ + L
Sbjct: 240 DPHPRYDAVFAVIDTAMKSGIEHDGTACMWLGYSDVFGPDNLHIL----DWEVTSLDASG 295
Query: 350 KTDLRT-TNNKISGLVEKYRPDAII----IDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
+ D N L Y+ I+ +G + G V + + A+
Sbjct: 296 QYDWLKRILNHGEALARHYKSHQGFTVAYIEDKQSGIVLLQQGKESGLPVEAINSKFTAL 355
Query: 405 DLE 407
+
Sbjct: 356 GKD 358
>gi|320535714|ref|ZP_08035802.1| hypothetical protein HMPREF9554_00523 [Treponema phagedenis F0421]
gi|320147420|gb|EFW38948.1| hypothetical protein HMPREF9554_00523 [Treponema phagedenis F0421]
Length = 487
Score = 53.4 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/304 (10%), Positives = 69/304 (22%), Gaps = 28/304 (9%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GKT + + +C A + +++ + S P +
Sbjct: 66 RCGRGWGKTRTAGQTFIEAVKAGYKRLSLCGA-TAEEVRDIMINGESGIAQYCPPELG-- 122
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + + R
Sbjct: 123 --------MDYKPSQKKIFFKNGAVVSIFYGSEPEKSRGAQSDFIWCDEIHKW------Q 168
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI---DTRTVE 259
P+ ++ L N + ++ K E + V+
Sbjct: 169 YPEETFDNLILGLRLGNNPLCIVTSTPKPTAFAKKLEKMTDEKGNPCVTTTVGSTYSNVD 228
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA-PL 318
+ F II++Y + + E+ Q + ++ IE E +
Sbjct: 229 NLSKKFFSTIISKY-KGTRLALQELFAQILDDNPNALFKKEWIEYNRVDELPLSVNRYRV 287
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
I D A +T + + ++ D++
Sbjct: 288 ITSVDPATSHNPDTS------NHTGIITILEGAAPEKLIMNGEVKCRRENHYYVLRDSSV 341
Query: 379 TGAR 382
G
Sbjct: 342 IGTP 345
>gi|83313380|ref|YP_423644.1| hypothetical protein amb4281 [Magnetospirillum magneticum AMB-1]
gi|82948221|dbj|BAE53085.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 494
Score = 53.4 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 56/527 (10%), Positives = 121/527 (22%), Gaps = 83/527 (15%)
Query: 29 SNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGI 88
NF + W ++ PR Q+ + A F+ +
Sbjct: 4 VNFPEFAWIWNQRLG----LGTPRH-QVRMARWLAARWHGRERELLLMAFRSS------- 51
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GK+T+ W+++ P + ++ LA K + + + + +H
Sbjct: 52 GKSTIVGLFCAWVLACNPDLRIMVLAADLALAKK-----MVRNVKRIIERHPLTQGLKPK 106
Query: 149 HPAPWYSDVLHCS--LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD- 205
W +D + + + + + + D A D
Sbjct: 107 RRDQWAADQFTVNRPGELRDPSMVAKGIGANITGSRAEIVICDDVEVPNTCDTAPKRADL 166
Query: 206 -VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
I + + + T + + ID
Sbjct: 167 RERLAEIEYVMVPGGTQLY-VGTPHSYYTIYADRPRLEAGESRPFLDGFHRLELPLIDAR 225
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE--------------------- 303
R+ ++ + G P+NI +
Sbjct: 226 GRSAWPERFPIERIGAIRKRSGPNKFDSQMMLRPVNIADGRLDPDRLRLYEAELSYGEGN 285
Query: 304 ------------EALNREPCPDPYAPLIMGCD-IAEEGGDNTVVVLRRGPVIEHLF--DW 348
A + P AP +A D +
Sbjct: 286 GVPLLTIGAKRMVAASCWWDPAYGAPGKGDASVVAALFTDEDGLYWLHRVRYLEHDPART 345
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM----LGYHVYRVLGQKRAV 404
+ +++ ++ A+ ++ N G L G + +
Sbjct: 346 ETDEATQLCRQVARFADELHLPAVQLETNGLGRFLPGLLRRELGGAGIACAVIEASSKRA 405
Query: 405 DLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAK 464
+ + V A L + + I + + + G
Sbjct: 406 KDQRIID--AFDAVLAAGALHVHRSVWDTPFIAEM---REWQPGARGRD----------- 449
Query: 465 STDYSDGLMYTFAENPPRSDM---DFGRCPSYQYEGVDLLIERRFEY 508
D D + P R G P ++ G ++ FE+
Sbjct: 450 --DGLDAVAGCLLSQPVRLSRPASATGGRPDWRPGGRAVVAHSDFEF 494
>gi|281417138|ref|ZP_06248158.1| conserved hypothetical protein [Clostridium thermocellum JW20]
gi|281408540|gb|EFB38798.1| conserved hypothetical protein [Clostridium thermocellum JW20]
Length = 526
Score = 53.4 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/204 (14%), Positives = 63/204 (30%), Gaps = 26/204 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ H +++++ N I R IG +TL L+L+ +V+ LA++E
Sbjct: 37 VLTPEQQHFVDNMDRYN------IILKPRQIGFSTLLLGLILYYCFQFENYNVLLLAHTE 90
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
L+ + +P+K+ + + ++ + + R YS
Sbjct: 91 DTT-QYLFTRLKLMYESIPDKYRIGFRKNNEMELFLENNSRIAVRTASASKGQGIGRGYS 149
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL-----TERNANRFWIMTSNPRR 232
I E + + I IL + N+ F T+
Sbjct: 150 --------------LNLIHLSEFAYYDEKIQDVILSSIENSLVKNENSRIFIESTAKGLN 195
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTR 256
++ +K F +
Sbjct: 196 HFYDLFKDSMAGNSRYKPFFYNWF 219
>gi|169827506|ref|YP_001697664.1| DNA packaging protein Gp17 [Lysinibacillus sphaericus C3-41]
gi|168991994|gb|ACA39534.1| DNA packaging protein Gp17 (Terminase) [Lysinibacillus sphaericus
C3-41]
Length = 529
Score = 53.4 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 15/237 (6%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ ++ + N E I R G +T LW T+P +++ ++
Sbjct: 31 QVIKFEINEAQQEIENLMLENRFVVIGKARQAGISTFVLARALWRALTKPNENILIVSYK 90
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
K E K ++ + F + P + S+ S
Sbjct: 91 GDSAKALF--EKLKQMNDAVPRDKFPH----VFPNVRRDNRSELLFTNGSRISSVTAGNK 144
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
R T+ H + + E +L + A + + S
Sbjct: 145 DIGRGSTYTYVHLSEFAFYASQETQLLSVEQSLA-------KGAESQLTIETTSNGTSNH 197
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
FY ++ + L + ++ + + + Y + G+ D
Sbjct: 198 FYRLYMQALKNKSKYVPYF--IPFYHKLYKKQFAHDYDEAERWYKATNGGKRLVSDD 252
>gi|330718718|ref|ZP_08313318.1| PBSX family phage terminase large subunit [Leuconostoc fallax KCTC
3537]
Length = 422
Score = 53.4 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 48/329 (14%), Positives = 97/329 (29%), Gaps = 21/329 (6%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG K++ A +++ ++ S L L+ ++ A++ ++ L
Sbjct: 37 VGGRGSTKSSFIAVMLMLMLEEDSNASAAVLRRVADTLRDSVVAQLKWAINKL------- 89
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
A W + + + R + V + I +E S
Sbjct: 90 -----GLSANWKATTSPLEIKNIYTGQKIIFRGADDPEKIKSVKVDKGHIKFIWFEELSE 144
Query: 203 TPDVI-NLGILGFLTERNANRFWIMTSNPRRLSGK--FYEIFNKPLDDWKRFQIDTRTVE 259
I L F + P+ + K DD + TV
Sbjct: 145 FKAAAGIRNIKQSLGRGGEQMFIFSFNPPKSQRNWTNEFVEQEKVRDDVLVHRSTYLTVP 204
Query: 260 --GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
+ F A ++ E G+ + F NII + + E +
Sbjct: 205 KTWLGNVFISEAKALKEVNPTAYEHEYLGKVVGTGAEVF--TNIINQRIPDELA-ATFDT 261
Query: 318 LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS-GLVEKYRPDAIIIDA 376
+ G D V L+ ++ N+++ + K D ++ A
Sbjct: 262 IYRGLDFGFGADPLGYVEFYYDSTRRRLYFVNEIYKTGMKNRVAVEAIMKLNKDNNVVIA 321
Query: 377 NNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
++ RT LG ++ + +V+
Sbjct: 322 DSAEPRTIAEFRDLGLNIQPAVKGPGSVE 350
>gi|281416525|ref|YP_003347326.1| terminase large subunit [Enterococcus phage phiFL2A]
gi|270209389|gb|ACZ63932.1| terminase large subunit [Enterococcus phage phiFL2A]
gi|270209454|gb|ACZ63996.1| terminase large subunit [Enterococcus phage phiFL2B]
Length = 430
Score = 53.4 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 94/362 (25%), Gaps = 32/362 (8%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG KTT A + LM P ++I L ++T + + S F +
Sbjct: 52 RGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDVVEIILQVAKVLSSKYFKTLVFALYG 111
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ L + + +L S+ T + + +I D+ D
Sbjct: 112 VELVLLKETTTEVDTNLKTSSRG------TSQLLGMGIYASLTGKHADIVITDDIVNIKD 165
Query: 206 VINLGILGFLTERNANRFWIMTSNPR-RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
++ + + R +G + + + D ID
Sbjct: 166 RVSRAERERTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKMPNVKKFDCYETGLIDKE 225
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
+ + + + F A + + D
Sbjct: 226 QRQALQQAM--TPSLFAANYELKHIADSESLF-------TAPTYTDSINLIYNGVAHVDA 276
Query: 325 AEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
A G D+T + + G +I + W K + +I L + Y+ + N
Sbjct: 277 AYGGDDSTAFTIFKEQKDGTIIGYGRKWQKH-VDDCLPEILRLHQHYQAGTFHTETNGDK 335
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL--HVKMADWLEFASLINHSGLIQN 438
L G V T L + + WLE I
Sbjct: 336 GYLAKNLRECGQFVTEYHESMN-----KFIKISTYLRKYWHLIIWLED----TDKEYIAE 386
Query: 439 LK 440
+
Sbjct: 387 IL 388
>gi|209548746|ref|YP_002280663.1| phage terminase, large subunit, PBSX family [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209534502|gb|ACI54437.1| phage terminase, large subunit, PBSX family [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 424
Score = 53.4 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/279 (10%), Positives = 74/279 (26%), Gaps = 29/279 (10%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG K+ L++ + + +P ++C + ++ +++ + L K
Sbjct: 24 GGRGGAKSHTIGGLLVHIAARQPEF-IVCGREFQNSIEDSVY----RLLENTIKKDGLT- 77
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
++ + S+ + G + +E
Sbjct: 78 -------DYKFTKTSIENTRTGSEFVFKGLSKLDGVSIKSLEGA-----TKLWIEEGQNI 125
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ ++ + + W + + + + KP D +++
Sbjct: 126 TNGTLNNVIPTIRTEGSE-IWTSFNPSVIEAPVWQRLVVKPPPDSVVVKVNHNDNPWFPK 184
Query: 264 SFHEGIIARY-GLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEALNREPCPDPYAPLI 319
E + +D G + + ++ + DP P+I
Sbjct: 185 VLEEERRHHFVTMDRATYDNIWEGVPMAFTAGAIFREEMAAMEKQGRIGKVPHDPTKPVI 244
Query: 320 MGCDIAEEGGDN------TVVVLRRGPVIEHLFDWSKTD 352
D+ T V G + + W +
Sbjct: 245 AVFDMGHAASGKGDPHAITFVQQGNGTAVNAIGYWEGNN 283
>gi|254560550|ref|YP_003067645.1| hypothetical protein METDI2093 [Methylobacterium extorquens DM4]
gi|254267828|emb|CAX23679.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
Length = 421
Score = 53.4 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 50/365 (13%), Positives = 93/365 (25%), Gaps = 42/365 (11%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLWLM----STRPGI--S 109
+E H P P + A+ GRG GKT A V L P
Sbjct: 10 RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAYGDPVFSPEPVER 69
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + + ++ + L P +
Sbjct: 70 IALVGETFADVRDVM-----------------IEGPSGLLALPRLGGAPPVWQPSRRRVV 112
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV---INLGILGFLTERNANRFWIM 226
+ A+ +DE + + ++ G +
Sbjct: 113 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAEATYDMIQFGLRLGTHPRGLVTT 172
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
T P L + + + + + PSF E ++ RY + + R E+ G
Sbjct: 173 TPRPVPLIRRLLADPRTVVTRSRT----ADNAQNLAPSFLEEVVGRYA-GTRLGRQELDG 227
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVV-----VLRR 338
+ + D+ + IE A R P + + D + G D +
Sbjct: 228 ELIEDRPDALWTRDSIERA--RVSEVPPLQRIAVAIDPPASSRVGADACGIVAAGLAADG 285
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ + L + DA++ + N G L V V
Sbjct: 286 TAYVLADATLEQAAPAVWARAALALYHRLAADALVAEVNQGGEMVVAVLAEADPSVPVVT 345
Query: 399 GQKRA 403
+
Sbjct: 346 VRATR 350
>gi|331085738|ref|ZP_08334821.1| phage terminase [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330406661|gb|EGG86166.1| phage terminase [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 515
Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 73/298 (24%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP---GIS 109
WQ + + + + + + GK+ L A + L LM+ G
Sbjct: 33 PWQDKIIRDIFGTVKENGFRQYNTA---YVEIPKKNGKSELAAAVAL-LMTCGDGEWGAE 88
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V A+ Q + ++ + P +S+ + + ++ Y
Sbjct: 89 VYGCASDRQQA-SIVFDVAVDMVDQCPALKKRIKPIMSVKRLVYQP-TNSFYQVLSAEAY 146
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ F H + + G+ D + +T +R I
Sbjct: 147 TKHGL---NVHAVIFDELHAQPNRELFDVMTKGSGDARTQPLYFLITTAGTDRNSICFEQ 203
Query: 230 PRRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVEGIDP-------SFHEGIIA 271
++ P DDW + + +
Sbjct: 204 HQKAEDILMGRKIDPTFYPVIYGIAEDDDWGSEESWYKANPSLGHTIALEKVQNAYQSAK 263
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ ++ R Q+ +Q E + G D++
Sbjct: 264 ENPAEENIFRQLRLNQWVKQSTRWMPMDRWDECDFEVDQDSLLGRECYAGLDLSSTSD 321
>gi|40643140|emb|CAE14675.1| unnamed protein product [Leptospira phage LE1]
Length = 563
Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/370 (11%), Positives = 85/370 (22%), Gaps = 27/370 (7%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW-LVLWLMSTRPGISVICL 113
QLE +E + + K + RG GK+T+ + V+WL+ R VI +
Sbjct: 71 QLELIEDIQSF----AGKKGRAPMKIIRALSRGFGKSTILSLCGVMWLILRRDWHFVIMV 126
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
+ S +Q K L V + F + +
Sbjct: 127 SASLSQAKGFLQKIVDECEDNELLVSDFPELRPAKDQKGQNVAWNDLDIVFRGGARIIAK 186
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTP-----DVINLGILGFLTERNANR----FW 224
+ R + + + DE +
Sbjct: 187 GFLNAIRGTRYRQYRPDALIVDDPDEEKDVESDSRMQKKYRWFDRAALKLGNQWGIDVIL 246
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQID--------TRTVEGIDPSFHEGIIARYGLD 276
T+ G+ K DW R + + + +I +D
Sbjct: 247 SYTTLSPNCIGEVIYNDTKKYWDWNRKKFSAIGVRPDGSEYSTWEAGAPLSMLIKEREVD 306
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEAL--NREPCPDPYAPLIMGCDIAEEGGDNTVV 334
E + F + + + + + + +V
Sbjct: 307 PISFAREKQNVILAEIDQKFKSRIQRYTFVRPDSWEGWTLAVAVDLSLGKTQRSDFSAIV 366
Query: 335 VLR---RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
+G E D ++ + + I+ + D +
Sbjct: 367 GTGLSPQGKFYEIYSDIARRPPDQIQIDFVKALRAFPWAVGGIETSGGQEYFLDAFKGHL 426
Query: 392 YHVYRVLGQK 401
+
Sbjct: 427 EDWNELCVNP 436
>gi|239631909|ref|ZP_04674940.1| terminase large subunit [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239526374|gb|EEQ65375.1| terminase large subunit [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 630
Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/357 (11%), Positives = 93/357 (26%), Gaps = 59/357 (16%)
Query: 20 WSDEIKLSFSNFVLHFFPWGE-KGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+ + NF + T L WQ + +
Sbjct: 75 YDLNKVSNILNFAAICPDVDTGEPTKL------MPWQAFILSQLIGWRNQDGGK---RFS 125
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSL 134
+ +S RG GKT + + + + + + + Q + + +
Sbjct: 126 RAIVSVARGQGKTYMMSIIACYSYLVESLGLSNQDFLVASINYKQTGKI-YGYIKGMMKK 184
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ F + + + ++ + + + +
Sbjct: 185 VIANEPFRSLAAEVGLDTHSIQSDQILMRNNNNVLRPISHESGQYD--------SYHFTT 236
Query: 195 IINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPR-------RLSGKFYEIFNKPL 245
I DE D I+ I G + +N I T+ P+ +
Sbjct: 237 AIFDEIGEVESRDKISKIISGQVKVKNRQFVQISTAYPKPGVPFHEDQKMIQQAMEQDYK 296
Query: 246 DDWKRFQIDTRTVEGIDPSF-HEGIIARYG------------------LDSDV------- 279
D + + +D +F E + DSD+
Sbjct: 297 RDADTYLGLIWAQDSLDETFKPETWVKSNPLLDLPDQREVLMQGLVDKRDSDMLSNNIGD 356
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
+ + + Q+ DS++ L IE A+ D +G D + + + +
Sbjct: 357 FQNKNLNMWLQESSDSYLKLADIERAIIPSFDIDGRDVY-IGFDYSMFSDNTALAFV 412
>gi|85858388|ref|YP_460590.1| mu-like prophage Flumu protein gp28 [Syntrophus aciditrophicus SB]
gi|85721479|gb|ABC76422.1| mu-like prophage Flumu protein gp28 [Syntrophus aciditrophicus SB]
Length = 479
Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 56/414 (13%), Positives = 104/414 (25%), Gaps = 70/414 (16%)
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE-RPDTFVGHHNTYGMAII 196
K W ++ L+ + H+S+ R +S PD G +
Sbjct: 81 KMWGKVLQLAAEDLGERVIDEEKKISAYVLHFSSGKRIHSMSSNPDAQAGKRGGR----V 136
Query: 197 NDEASGTPD--VINLGILGFLTERNANRFWIMTSNPRRLSGKF-----YEIFNKPLDDWK 249
DE + PD + +T + + S R + F + +
Sbjct: 137 LDEFALHPDPRKLWSIAYPGITWGGS---LEVISTHRGSANFFNGLVREVKEHGNPKNIS 193
Query: 250 RFQIDTRTV-----------EGIDPSFHEGIIARYG--------LDSDVTRVEVCGQFPQ 290
++ +G+ D + + E P
Sbjct: 194 LHRVTLEDALTDGFLYKLQQSLPADDEIQGMDEATYFDFVKSGCADEESFQQEYMC-NPA 252
Query: 291 QDIDSFIPLNII----EEALNREP----CPDPYAPLIMGCDIAEEGGDNTVVVL----RR 338
D +F+ ++I A P PL G DI + D TV+ +
Sbjct: 253 DDATAFLEYDLIAACEYGATENWRMSLDGRRPEGPLYAGLDIGRKK-DLTVLWVLEKLGD 311
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ + + + + D G D +
Sbjct: 312 VLYTREVIALRNMSKPDQEKVLWPWLARMNRACL--DYTGLGIGWGDDAKKKIGEYRIET 369
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASL--INHSGLIQNLKSLKSFIVPNTGELAIE 456
E L + +E L + +L+S+ + G +
Sbjct: 370 VTFTPHVKE-------ALAYPVRGTMEDRRLRIPYDPRIRADLRSV-TKETTAAGNIRFT 421
Query: 457 SKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEGVDLLIERRFEYDS 510
++R + D L + D G YQ + RRF S
Sbjct: 422 AERSEDG-HADRFWALALA----ISAAGTDIGGPVEYQA-----VSRRRFSTTS 465
>gi|169633422|ref|YP_001707158.1| putative phage terminase [Acinetobacter baumannii SDF]
gi|169152214|emb|CAP01118.1| conserved hypothetical protein; Putative phage terminase
[Acinetobacter baumannii]
Length = 432
Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 52/350 (14%), Positives = 92/350 (26%), Gaps = 38/350 (10%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + + P + + A + Q++ + + + W
Sbjct: 29 AFVAGFGSGKTWVGCSSLCDKSWSFPKVPLGYFAPTYPQIRDIFFPTIDEV-----AFDW 83
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + Y + S E+P+T VG + + D
Sbjct: 84 GLKTK--------IYESNKEVDLYYGRQYRSTIICRSMEKPNTIVGFKIGHALIDELDVM 135
Query: 201 SGTP--DVINLGI-------LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+ I G L + K + +
Sbjct: 136 TKVKAQQAWRKIIARMRYKQAGLLNGIDVATTPEGFKFTHEQFVKEANQSDAKRALYGMI 195
Query: 252 QIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T E + + + Y + + GQF + P + + +
Sbjct: 196 QASTYDNEANLPDDYIASLFESY--PPQLISAYLKGQFVNLTSGAVYP-DFDRTLNHTDE 252
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
P L++G D V V+R G D T + L+EK+
Sbjct: 253 EIRPNEALLIGMDFNVLKMAAVVYVIRDGKPRALDELVGVRDTPTMADL---LIEKFPNH 309
Query: 371 AIIIDANNTGARTCDY---------LEMLGYHVYRVLGQKRAVDLEFCRN 411
+ I + G T L+ G V D N
Sbjct: 310 EMTIIPDAAGQATSSKKSSESDHAILKQKGLRVEVNSTNPNIKDRINAVN 359
>gi|240137990|ref|YP_002962462.1| hypothetical protein MexAM1_META1p1321 [Methylobacterium extorquens
AM1]
gi|240007959|gb|ACS39185.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
Length = 421
Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/355 (13%), Positives = 87/355 (24%), Gaps = 38/355 (10%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLWLM----STRPGI--S 109
+E H P P + A+ GRG GKT A V L P
Sbjct: 10 RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAQGDPVFTPEPVER 69
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + + ++ + L P +
Sbjct: 70 IALVGETFADVRDVM-----------------IEGPSGLLALPRLGGAPPVWQPSRRRVM 112
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV---INLGILGFLTERNANRFWIM 226
+ A+ +DE + + ++ G +
Sbjct: 113 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAETTYDMIQFGLRLGTHPRGLVTT 172
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
T P + + + PSF E ++ RY + + R E+ G
Sbjct: 173 TPRPV----PLIQRLLADPRTVVTRSRTADNAQNLAPSFLEEVVGRYA-GTRLGRQELDG 227
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM------GCDIAEEGGDNTVVVLRRGP 340
+ + D+ + IE A E P + + + G G +
Sbjct: 228 ELIEDRPDALWTRDSIERARVFEAPPLQHIAVAIDPPASSGVGADACGIVAAGLAADGTA 287
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+ + L + DA++ + N G L V
Sbjct: 288 YVLADATLEQAAPAVWARAALALYHRLAADALVAEVNQGGEMVVAVLAEADPSVP 342
>gi|152989642|ref|YP_001347771.1| hypothetical protein PSPA7_2404 [Pseudomonas aeruginosa PA7]
gi|150964800|gb|ABR86825.1| hypothetical protein PSPA7_2404 [Pseudomonas aeruginosa PA7]
Length = 436
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 55/418 (13%), Positives = 99/418 (23%), Gaps = 62/418 (14%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
AG G GKT + + P I+ A + Q++ + + + W
Sbjct: 27 VAGFGSGKTWVGCSGLAQHAWEWPRINAGYFAPTYAQIRDIFYPTMEEV-----AFDWGL 81
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ H Y T S E+P T VG + D S
Sbjct: 82 RTK--------INQANHEVHLYSGSAYRTTIICRSMEKPQTIVGFKVGRSLVDELDVLSL 133
Query: 203 TP--DVINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRFQI 253
I +T+ P F + + + + Q
Sbjct: 134 VKAQQAWRKIIARMRYKVDGLRNRVDVTTTPEGFKFVFQQFVKQLREKPHLQDLYGLVQA 193
Query: 254 DTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
T E + + + ++ Y + + GQF + I +
Sbjct: 194 STYDNEANLPDDYIDSLMESY--PPQLIAAYLRGQFVNLTSGT-IYTAYDRTLNASQEMV 250
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG--------LV 364
P P+ +G D V V R G + D +I
Sbjct: 251 QPGEPIFVGMDFNVGKMAAVVHVKRMGLPHAVDEIVNGYDTPDMIRQIKERFWLYADGEY 310
Query: 365 EKYRPDAIIIDANNTGARTC-------DYLEMLGYHVYRVLGQKRAVDL-----EFCRNR 412
R I DA+ ++ L+ G+ V D N
Sbjct: 311 RPTRQIRIYPDASGDSRKSVRASETDIALLKQAGFIVSAPAANPPVKDRINSMNAMFCNA 370
Query: 413 RTELHVKMADWLEFASLINHS-GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ E + + + + E + + +
Sbjct: 371 KGE---------RRYRVNPDRCPTYADALEQQVWGTNG------EPDKSADIDHPNDA 413
>gi|226940436|ref|YP_002795510.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
gi|226715363|gb|ACO74501.1| Terminase large subunit [Laribacter hongkongensis HLHK9]
Length = 93
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
E + LH + WG LEG + PR+WQ E M + H N +
Sbjct: 14 ECATDPLRWALHAYDWGR--GELEGVTGPRAWQREVMSDIGNHLKNPATRFSAFD----- 66
Query: 83 SAGRGIG 89
AGRG+G
Sbjct: 67 -AGRGLG 72
>gi|28377533|ref|NP_784425.1| prophage Lp1 protein 38 [Lactobacillus plantarum WCFS1]
gi|28270365|emb|CAD63266.1| prophage Lp1 protein 38 [Lactobacillus plantarum WCFS1]
Length = 428
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/318 (12%), Positives = 98/318 (30%), Gaps = 20/318 (6%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I RG K+ A +++ + +++ + + KT+ + E K ++ + +F
Sbjct: 28 IKGSRGSKKSVTTAHNLIYRLVKYHWSNILVVRRNANTNKTSTFVECKKAINDFHLERYF 87
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + G+D T + + +
Sbjct: 88 KYNESLPEITYLPTGQKIVFRGLDDPLKLTSVNVPT-----------GELCWLWVEEAYE 136
Query: 202 GTPDVINLGILGFLTERNANRFW---IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
++ L + F+ + + E F++P DD R
Sbjct: 137 IESFSKLQTVIESLRGNDPQVFYQVTLTFNPWNEHHWLKREFFDQPRDDTFVRTTTVRCN 196
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF-IPLNIIEE-ALNREPCPDPYA 316
E + + + + + Y + + V G++ + F + IE A+++
Sbjct: 197 EFVSDEYKQRLYSLYQTNPRRAKTVVDGEWGVAEGLVFEDNIEQIEFNAMDKIQECGQTG 256
Query: 317 PLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL-RTTNNKISGLVEKYRPDAIIID 375
G D N V + + L+ +++ T I+ ++ + I
Sbjct: 257 ---FGLDYGFSNDPNAFVAVAVDVRNKQLWVYNEMYTYHQTTPHIAEWLKVNGYERARIY 313
Query: 376 ANNTGARTCDYLEMLGYH 393
A++ + L LG
Sbjct: 314 ADSANSERTAQLNDLGIT 331
>gi|109521463|ref|YP_655891.1| gp26 [Mycobacterium phage Wildcat]
gi|91980915|gb|ABE67631.1| gp26 [Mycobacterium phage Wildcat]
Length = 537
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/268 (11%), Positives = 62/268 (23%), Gaps = 29/268 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + + + R GKT + L + I
Sbjct: 62 DPWQEFVLRNMLNLDAQGHWAASEALLLV----PRQNGKTAIIEARELVGLYVVCDKLCI 117
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A + + + ++ + +S + + +
Sbjct: 118 HTAVLFNAARESFYRLKARIENNETLNKITRFRSGNDNMSIEVKPKKESRHPNAGGRVIY 177
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
M R I+ DEA + I + R +S
Sbjct: 178 MARGT--------AVARGFSADVIVLDEAFALDEASIAAIDYATSARANPFIIYASSTGL 229
Query: 232 RLSGKFYEIFNKP--LDDWKRFQIDTRTVEGIDPSF--------------HEGIIARYGL 275
S + ++ ++ D F T +D E I
Sbjct: 230 EDSTELEKLHDRGMRQDPDMLFMEWCATTRDLDDEENYYRSNPALGYRISIERIRKERNR 289
Query: 276 DSD-VTRVEVCGQFPQQDIDSFIPLNII 302
SD E G + ++ IP +
Sbjct: 290 HSDKTFGRERLGLWNDNAFNAVIPADQW 317
>gi|154251358|ref|YP_001412182.1| hypothetical protein Plav_0902 [Parvibaculum lavamentivorans DS-1]
gi|154155308|gb|ABS62525.1| protein of unknown function DUF264 [Parvibaculum lavamentivorans
DS-1]
Length = 448
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 55/412 (13%), Positives = 105/412 (25%), Gaps = 50/412 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ GRG GKT A V ++ + + + + + S ++
Sbjct: 73 VLGGRGAGKTRAGAEWVAAEVAAGRAGRIALIGETLADAREVMIDGPSGLRTIAREDEKP 132
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ W + + + + S P F EA+
Sbjct: 133 RYEVTRKRLL-WPNGAVA--------YVFSAGEPESLRGPQ-FDAAWGDELAKWRYAEAA 182
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
++ G N + T P + +
Sbjct: 183 -----WDMLQFGLRLGENPRQVMTTTPRPV----PVLKRLIADKTTVTTRAATAANRANL 233
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAPLIM 320
F +IARY + + R E+ + + D+ IE R +
Sbjct: 234 ADGFFRAVIARY-EGTRLGRQELDAELIDDNPDALWKREAIERGRVERAVEFVRVVVGVD 292
Query: 321 GCDIAEEGGDNTVV------VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ D + G V++ +++G + D I+
Sbjct: 293 PPATSGAKSDECGIVCAALGADGHGYVLDD-RSMGGLSPLAWAKRVAGCYRAHEADRIVA 351
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
++N G + L + R E + + L++H G
Sbjct: 352 ESNQGGEMVGSVMRQEMPDAPIRLVRATRGKA-----VRAEPIAALYER----GLVHHVG 402
Query: 435 LIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
L+ VP G KS D D L++ E R +
Sbjct: 403 AFAKLEDQLCDWVP-------------GGKSPDRLDALVWALTELMLRGEAG 441
>gi|9629284|ref|NP_044484.1| DNA packaging terminase subunit 1 [Human herpesvirus 2]
gi|82013499|sp|P89438|TRM3_HHV2H RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein UL15; AltName: Full=Terminase
large subunit
gi|1869837|emb|CAB06775.1| UL15 [Human herpesvirus 2]
Length = 734
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/350 (12%), Positives = 86/350 (24%), Gaps = 35/350 (10%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
F+ +V L S + + R GKT L+ +++ GI + A+
Sbjct: 231 FLRLVFEIPLFSDTAVRHFRQRATVFLVPRRHGKTWFLVPLIALSLASFRGIKIGYTAH- 289
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ ++ E+ L + + T
Sbjct: 290 IRKATEPVFDEIDACLRGWFGSSRVDHVKGETISFSFPDGSR---------------STI 334
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSG 235
G + DEA+ I+GFL + N ++ ++N + +
Sbjct: 335 VFASSHNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQANCKIIFVSSTNTGKASTS 394
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
Y + + + +
Sbjct: 395 FLYNLRGAADELLNVVTYICDDHMPRVVTHTNATA---------------CSCYILNKPV 439
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT 355
FI ++ PD + I+G E G D V+ G + T+
Sbjct: 440 FITMDGAVRRTADLFLPDSFMQEIIGGQARETGDDRPVLTKSAGERFLLYRPSTTTNSGL 499
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
++ V+ A+ TG RA+
Sbjct: 500 MAPELYVYVDPAFTANTR--ASGTGIAVVGRYRDDFIIFALEHFFLRALT 547
>gi|320540563|ref|ZP_08040213.1| putative phage terminase, large subunit [Serratia symbiotica str.
Tucson]
gi|320029494|gb|EFW11523.1| putative phage terminase, large subunit [Serratia symbiotica str.
Tucson]
Length = 582
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/344 (11%), Positives = 90/344 (26%), Gaps = 51/344 (14%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS--V 110
WQ + + N + AG+G GK+ L A + L+ + V
Sbjct: 90 PWQCFIVGALFGWL---NNEGQRRFRMAYVEAGKGSGKSPLAAGIGLYCLVADNEARAEV 146
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A + Q L+ + + P L S +
Sbjct: 147 YAAATKKDQAM-ILFRDAVAMVDQSP----------KLAERIQKSGGAGKEWNLAFLQAR 195
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
R S + + H A+I++ + + + R +++T++
Sbjct: 196 AFFRPISADDGQSGPRPHC----ALIDEIHEHKSNQVVEMMRAGTKGRQQALIFMITNSG 251
Query: 231 RRLSGKFYEIFNKPL--------DDWKRFQIDTRT--------------------VEGID 262
+ Y+ DD I + D
Sbjct: 252 HNKTSVCYDYHEYGRKVAEGSIEDDSFFAFICSLDEGDDPFKDSGCWKKANPSLGNTFSD 311
Query: 263 PSFHEGIIARYGLD--SDVTRVEVCGQFPQQDIDSFIPLNIIEEAL-NREPCPDPYAPLI 319
E + G+ + R Q+ + N + + + +P
Sbjct: 312 RYLQEQVTQARGMPAKESLVRRLNFCQWVDAENPWINSDNWMACEKTSLDLATLANSPCY 371
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL 363
G D++ + + + + ++ W+ D ++ +
Sbjct: 372 GGLDLSGKQDLTALALYWPEEKVAYVEFWTPKDTLLERARVDRV 415
>gi|300724886|ref|YP_003714211.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
19061]
gi|297631428|emb|CBJ92125.1| putative terminase large subunit [Xenorhabdus nematophila ATCC
19061]
Length = 553
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/336 (9%), Positives = 76/336 (22%), Gaps = 31/336 (9%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
++ E+ F F P WQ + + + +
Sbjct: 39 VFDSEVVARFIAFSRICPHVKGHLRGKPIILEP--WQQFAFANLLGFKVKATGR--RKYR 94
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL------ 132
I R K+T+ A L W + G I A ++ + +
Sbjct: 95 SAYIQVPRKNAKSTVAAILANWFLVMEQGQQDIYTAAVSRDQARIVFDDARQMSLLSKPL 154
Query: 133 --SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVG 186
+ +H + P + S + + + +G
Sbjct: 155 KKRVAIQQHKVTYPKTNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNAVYSALELGMG 214
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
+ I + + + I+ + S
Sbjct: 215 ARPEGLLFAITTAGNNV--------ISACKQHYDYCCQILDGEEQNESLFALIYELDDEH 266
Query: 247 DWKRFQIDTRTVEGID-----PSFHEGIIARYGLDS--DVTRVEVCGQFPQQDIDSFIPL 299
+ + + +D + H+ I G+ S + + Q +
Sbjct: 267 EIDDETLWIKANPNLDVSVDSSALHDTIQKARGIPSQWTEMLTKRFNIWCQGETPWMGVG 326
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+ + G D++ G ++
Sbjct: 327 AWKACQSDYDENDLKGLECYAGLDLSSTGDITSICY 362
>gi|323139470|ref|ZP_08074518.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC
49242]
gi|322395272|gb|EFX97825.1| hypothetical protein Met49242DRAFT_3906 [Methylocystis sp. ATCC
49242]
Length = 439
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 53/443 (11%), Positives = 115/443 (25%), Gaps = 64/443 (14%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGA--------ISAGRGIGKTTLNA----WLVLW--L 101
E +++ + + + P A I GRG GKT A L L
Sbjct: 20 RELARLLNDWEIVARKDQWPPDLTEAGLPWRVWLILGGRGAGKTRAGAEWVKGLALGRPH 79
Query: 102 MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
TRP + + + ++ + VS L++ + +S
Sbjct: 80 FCTRPVSRIALIGETAADVREVMIEGVSGLLAIHGKRDRPRWESSRRRL----------- 128
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT---PDVINLGILGFLTER 218
+ A DE + + ++ G
Sbjct: 129 -------VWDSGVVAQAFSAEDPESLRGPQFHAAWCDELAKWRYARETWDMLQFGLRLGD 181
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
+ T P + + + PSF E ++A+Y +
Sbjct: 182 WPRQLVTTTPRPT----PLLKDLIAHPATVLTRALTRENAANLAPSFLESVVAQYA-GTR 236
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
+ R E+ G+ ++ D+ ++IE + + + + + + ++
Sbjct: 237 LGRQELDGEIVEERKDALWTRDLIEASRVADAPRLARIVVAVDPPASFGKRADNCGIIAA 296
Query: 339 GPV------IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
G + S L K D ++ + N G L
Sbjct: 297 GADAGGAIFVLADSTISAARPAQWARAAIALYHKLSADVLVAEVNQGGEMVRAVLNEADP 356
Query: 393 HVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGE 452
+ + +L+ + ++ +++ F + G
Sbjct: 357 AAPVTMVRATRGKYLRAA-PVAQLYEQGR--VKHVGAFPA---LEDEMCDFGFDGLSCGR 410
Query: 453 LAIESKRVKGAKSTDYSDGLMYT 475
S D D L++
Sbjct: 411 ------------SPDRLDALVWA 421
>gi|147668985|ref|YP_001213803.1| hypothetical protein DehaBAV1_0339 [Dehalococcoides sp. BAV1]
gi|146269933|gb|ABQ16925.1| hypothetical protein DehaBAV1_0339 [Dehalococcoides sp. BAV1]
Length = 457
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 52/419 (12%), Positives = 110/419 (26%), Gaps = 75/419 (17%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGIS 109
R +Q + V N ++ R GK L++ L L L+ +
Sbjct: 6 RPYQQDVARAVLRSIFNQQGQ------TFSVEIARQGGKNELSSQLELLLLTLYMFEPKN 59
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
++ A + + L+ ++++ + ++
Sbjct: 60 LVKCAPTFKPQLNISMMRLKDRLNEA------------GFTNIYHTEGGYIIRLNQARAV 107
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ NT + + DEA + + +
Sbjct: 108 FLSAEP-------SASVVGNTAHLLLEVDEAQDVNKEKYSKEFKPMGATTNVTTVLYGTT 160
Query: 230 PRRLSGKFYEIFNKPLDDWK-----RFQIDTRTVEGIDPSFHEGI---IARYGLDSDVTR 281
S + K F+ D V +P++ R G + +
Sbjct: 161 WDSFSLLEEIKEQNIEKEQKDGLKRHFRYDWEAVAAHNPAYLAYALSEKERLGENHPLFL 220
Query: 282 VEVCGQFPQQDIDSFIP--LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN-----TVV 334
+ F L++++ + P+ + G D+A E T V
Sbjct: 221 TQYRLLPVSGGGGMFSNEQLDLLKGNHPCQIYPEKGKVYVAGLDLAGEDSQTGGISPTTV 280
Query: 335 VLRRGPVIEHL----------------------FDWSKTDLRTTNNKISGLVEK-YRPDA 371
LRR + + + W T K+ L+ K ++
Sbjct: 281 NLRRDSSVLTIAELDYTFAKAPYNLPQVRLVCHYSWQGTRHALLYEKLVELLGKVWKCRK 340
Query: 372 IIIDANNTGARTCDYLEM-LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
+ +DA G +L LG + Q + ++ L + + L
Sbjct: 341 VAVDATGLGQPVASFLRESLGSRILPFAFQPAS---------KSRLGFNLLSAVNSGRL 390
>gi|154504818|ref|ZP_02041556.1| hypothetical protein RUMGNA_02328 [Ruminococcus gnavus ATCC 29149]
gi|153794701|gb|EDN77121.1| hypothetical protein RUMGNA_02328 [Ruminococcus gnavus ATCC 29149]
Length = 515
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/345 (12%), Positives = 89/345 (25%), Gaps = 58/345 (16%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
M+ + NF+ + + P WQ E + + +
Sbjct: 1 MFDEAKADHAVNFINCLKHTKGRWRGVPFELLP--WQDEIIRTLYGTVKENGYRQYNT-- 56
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRP---GISVICLANSETQLKTTLWAEVSKWLSLL 135
+ GK+ L A + L+ M+ G V A+ Q + ++ +
Sbjct: 57 -CYCEIPKKNGKSELAAAIALY-MTCGDGEWGAEVYGCASDRQQA-SIVFDVAVDMVDQC 113
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P +S+ + Y + + H A+
Sbjct: 114 PALKKRIKPVMSVKRLVYKPTN----------------SFYQVLSAEAYT-KHGLNVHAV 156
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK---------- 243
I DE P ++ ++ G R F+++T+ + +E K
Sbjct: 157 IFDELHAQPNRELFDVMTKGSGDARTQPLFFLITTAGTDRNSVCFEQHQKALDIIEGRKI 216
Query: 244 ------------PLDDWKRFQIDTRTVEGID-PSFHEGI------IARYGLDSDVTRVEV 284
DDW ++ + + E + + +V R
Sbjct: 217 DPTFYPVIYGASDEDDWSSEEVWYKANPSLGYTIDIEKVQNAYVSAKENAAEENVFRQLR 276
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
Q+ +Q + + G D++
Sbjct: 277 LNQWVKQSTRWMQMDKWDACSFSVNEEELLGRECYGGLDLSSSTD 321
>gi|240081035|ref|ZP_04725578.1| putative phage associated protein [Neisseria gonorrhoeae FA19]
gi|240117647|ref|ZP_04731709.1| putative phage associated protein [Neisseria gonorrhoeae PID1]
gi|240123201|ref|ZP_04736157.1| putative phage associated protein [Neisseria gonorrhoeae PID332]
gi|268603349|ref|ZP_06137516.1| phage terminase [Neisseria gonorrhoeae PID1]
gi|268681827|ref|ZP_06148689.1| phage terminase [Neisseria gonorrhoeae PID332]
gi|268587480|gb|EEZ52156.1| phage terminase [Neisseria gonorrhoeae PID1]
gi|268622111|gb|EEZ54511.1| phage terminase [Neisseria gonorrhoeae PID332]
Length = 424
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 89/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 48 QRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSH 107
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 108 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 160
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ + + G+
Sbjct: 161 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEG 220
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 221 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 280
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 281 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNAAGIEE 340
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 341 GIRAARMLFPKVYFDK 356
>gi|268597147|ref|ZP_06131314.1| phage terminase [Neisseria gonorrhoeae FA19]
gi|268550935|gb|EEZ45954.1| phage terminase [Neisseria gonorrhoeae FA19]
Length = 426
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 89/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 50 QRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSH 109
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 110 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 162
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ + + G+
Sbjct: 163 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEG 222
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 223 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 282
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 283 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNAAGIEE 342
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 343 GIRAARMLFPKVYFDK 358
>gi|240115343|ref|ZP_04729405.1| putative phage associated protein [Neisseria gonorrhoeae PID18]
Length = 424
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 89/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 48 QRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSH 107
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 108 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 160
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ + + G+
Sbjct: 161 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEG 220
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 221 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 280
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 281 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNATGIEE 340
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 341 GIRAARMLFPKVYFDK 356
>gi|291334408|gb|ADD94064.1| hypothetical protein [uncultured phage MedDCM-OCT-S01-C1]
Length = 173
Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 24/167 (14%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ A+ GRG GK+ A L + G ++C + ++ ++ A ++ + +
Sbjct: 20 RIAV-GGRGSGKSMTVAMLCILEAIQ--GKKILCCREYQNSIQESVHALIASLIDSM--- 73
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
A + S + ++ + T+ +
Sbjct: 74 ----------GVAGFTVTRDKISHTSGGEFIFKGL----ARNAESIKSLYGTHV--AWVE 117
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
EA + + + E + ++ +T+NPR + E F K
Sbjct: 118 EAQTVSEESLSLLTPTIREAGS--YFFITANPRSEADPLTERFLKGR 162
>gi|312116003|ref|YP_004013599.1| hypothetical protein Rvan_3315 [Rhodomicrobium vannielii ATCC
17100]
gi|311221132|gb|ADP72500.1| hypothetical protein Rvan_3315 [Rhodomicrobium vannielii ATCC
17100]
Length = 466
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 58/425 (13%), Positives = 109/425 (25%), Gaps = 67/425 (15%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRP-------GISVICLANSETQLKTTLWAEVSKWLSL 134
I AGRG GKT A + P +A + + + S L++
Sbjct: 61 ILAGRGAGKTRTGAEW-VRACVCGPTPLSAGRYSRFALVAETAADARDVIVEGPSGLLAI 119
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
P + + A
Sbjct: 120 HPRGFRPKFEPSKRRLT------------------WPNGAVAMLYNATEPDQLRGPQHDA 161
Query: 195 IINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
DE + + L + R + T+ R E K +
Sbjct: 162 AWCDELAKWRYARETWDMLQFGLRLGHDPRQIVTTTP--RPIAIIREFLGKEGHGVVLTR 219
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE-EALNREPC 311
T + I R + + R E+ + + ++++ + R
Sbjct: 220 GSTYDNRANLAQNYFNTIVRSYEGTRLGRQEINAELLDDVAGALWTRSLLDQHRIARGTP 279
Query: 312 PDPYAPLIMGCDI------AEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNK 359
+ +++G D A + T +V+ RG V++ L + K
Sbjct: 280 LPRFDRVVVGIDPAARPSGAGDKTSETGIVVCGLGEDGRGYVLDDLSNRQG--PMGWAQK 337
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLE--MLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ Y DA++++ N GA L G + V + L+
Sbjct: 338 AVAGFDLYEADALVVEINQGGAMVETVLRAVRGGLPIRAVRATRGKTVRAEPI---AALY 394
Query: 418 VKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFA 477
+ +L + F + G D D L++ A
Sbjct: 395 AQGR-VSHVGALPTLEDQMVQFT---PFGIEGDGA-------------ADRVDALVWALA 437
Query: 478 ENPPR 482
+ PR
Sbjct: 438 DLFPR 442
>gi|315650013|ref|ZP_07903093.1| PBSX family prophage LambdaCh01 protein [Eubacterium saburreum DSM
3986]
gi|315487783|gb|EFU78086.1| PBSX family prophage LambdaCh01 protein [Eubacterium saburreum DSM
3986]
Length = 425
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/343 (12%), Positives = 102/343 (29%), Gaps = 24/343 (6%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119
+ + + R K+ A +W + P +++ +
Sbjct: 12 QLPEVVGRGYGTYWRYKGRYRVCKGSRASKKSKTTALWYIWAIMKYPQANLLVVRKVFRT 71
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
LK + + E+ + L ++ +E + L + G+D T
Sbjct: 72 LKDSCFTELKWAIRRLKVENHWEEKESPLEMTYIPTGQKIYFRGLDDPLKITSITVEQG- 130
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVI-----NLGILGFLTERNANRFWIMTS--NPRR 232
Y + +EA + + I G + + I +
Sbjct: 131 -----------YLCWMWLEEAYEISNENDFNMLDESIRGAIPKDVKLFKQITITLNPWNE 179
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
F+ P D+ + E +D + + + + +V G++
Sbjct: 180 HHWIKKRFFDTPDDEVLAMTTNYLCNEWLDKADLKVFESMKKNNPRRYQVAGLGEW--GI 237
Query: 293 IDSFIPLNIIEEALN-REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
++ + N E+A + E + G D + + + ++ + +
Sbjct: 238 VEGLVYENWEEKAFDIGEVKKISTIQSVFGLDFGYTNDPSALFCGLVDTKSKTIWVFDEM 297
Query: 352 DLRTTNNK-ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH 393
+ +N+ I+ V K I A++ ++ D L LG
Sbjct: 298 YKKGMSNEAIADEVTKMGYAKERIRADSAEKKSIDRLRHLGLQ 340
>gi|261881105|ref|ZP_06007532.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270332111|gb|EFA42897.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 423
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/377 (9%), Positives = 98/377 (25%), Gaps = 47/377 (12%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV--LWLMSTRPGI---SVICLANS 116
+ H + N + F I+ GR GK+ + + L T ++ +
Sbjct: 2 IKTHKVYYPIYSNKDKFIILITGGRASGKSHFVSSFLERLTFEMTPIDKIVHQILYTRYT 61
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
++ E + L + +F + S +T
Sbjct: 62 MVSANISIIPEFLEKAELDGTQKYFRST-----------RSDVTNRMTGSTVMFRGLKTS 110
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
S + H ++++ + I+ + ++ I+ NP +
Sbjct: 111 SGNQTAKLKSIHGI-TTFVVDEAEEWVSEKEFETIMLSIRQKGIQNRIIIVMNPTDNNHW 169
Query: 237 FYEIFNKPLDDW-----------------KRFQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
Y+ F + +E + F + + +
Sbjct: 170 VYKRFIENTHKEVMYDGVPVQISTHPNVLHIHTTYLDNLENLSQEFINEVEDMKANNPEK 229
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
V G++ + + + + + +G D + ++
Sbjct: 230 YAHTVMGRWADVAEGAVFKHIGVVKEFPKWCK-----KVAIGLDFGYTNDVSAAMMCGMI 284
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLG 399
++ + +++ I L +R + + + + G +Y V
Sbjct: 285 DDNLYVDELFYRTSMLSSDLIKAL---HRYEMKVFSDSADPR-LVQEIHNGGIKIYPVEK 340
Query: 400 QKRA----VDLEFCRNR 412
+ +D N
Sbjct: 341 GAGSIIAGIDKMKSLNI 357
>gi|319899324|ref|YP_004159421.1| hypothetical protein BARCL_1179 [Bartonella clarridgeiae 73]
gi|319403292|emb|CBI76851.1| phage-related protein [Bartonella clarridgeiae 73]
Length = 442
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/350 (12%), Positives = 88/350 (25%), Gaps = 36/350 (10%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT A + + ++C + L + E+ + + P
Sbjct: 27 GGRGSGKTRSFALMTAVIGYRHGKAGERGIILCARQFQNSLAESSLEEIKRAIESYP--- 83
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ +Y D +G + DE
Sbjct: 84 ---------FLSDYYEVGDKYIRSKDGCIVYAFAGLDRNIASVKSMG----RILLCWVDE 130
Query: 200 ASGTPDVINLGILGFLTERNANRF---WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
A D ++ L E + W+ + R + + K +I+ R
Sbjct: 131 AEPVTDAAWQILIPTLREEGKDWHSELWVTWNPCRENAAVEKRFRFTKDPNVKGVEINWR 190
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ A + + G++ Q ++ ++E P
Sbjct: 191 DNPKFPAKLNRDRKADLEQRPEQYQYIWEGEYLQAMQGAYYQKLLLEAEQEGRITKVPRD 250
Query: 317 PLI-----MGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
PLI D T + + + G I L + + + + Y
Sbjct: 251 PLIQIKIFWDIGGTGAKADATALWVAQFVGREIRVLDYYEAQGQPLSEHIGWICQKGYEK 310
Query: 370 DAIIIDANNTGARTC------DYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+++ + L+ G+ + Q R
Sbjct: 311 ALMVLPHDGATKDRVYNVSFESALQQAGFRTQIIPNQGIGAVKMRIEAVR 360
>gi|254304016|ref|ZP_04971374.1| possible bacteriophage terminase large subunit [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
gi|148324208|gb|EDK89458.1| possible bacteriophage terminase large subunit [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 574
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 60/506 (11%), Positives = 137/506 (27%), Gaps = 118/506 (23%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISV 110
R +Q + + + + GR GK+ L+ +T +
Sbjct: 69 RGFQEFIIGSLHGWKKKKTGDRRFREAYLQV--GRRNGKSFLSGIESTLFSTTIGIKERI 126
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
C A + Q +W E+ ++ S + + ++
Sbjct: 127 FCAATKQDQA-NIVWDEIRNFIE-----------SDKDLSELFKVKEHNRTIQNIVTGSV 174
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSN 229
+ + D + I DE P + I +L + + +T+
Sbjct: 175 IKALSKDTKGMD------GFGNILAICDELHAHPNNQIYKLLLDGQADVDNALTLAITTA 228
Query: 230 PRRLSGKFYE-------------------------IFNKPLDDWKRF------QIDTRTV 258
L+ YE + + DW+ + +
Sbjct: 229 GFNLNSFCYEHYKFCEKILEGVIQKDTLFIFICEMDKDDDIWDWRNWLKANPYHLYEEDG 288
Query: 259 EGIDPSFHE-------GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA-LNREP 310
+ E + G + + ++ +I L +E +
Sbjct: 289 ITPNKKKIEIITQKAIDAKEKGGAELTNFLTKQLNRWVTTGTGQYINLEKLENCGSDLTL 348
Query: 311 CPDPYAPLIMGCDIAEEGGDNTV--VVLRRGPVI----------EHLFDWSKTDLRTTNN 358
+G D+++ G ++ + I L + KTD
Sbjct: 349 ADMQGKSCYLGFDLSKGGDLTSIALIFPLEDGKIYVYSHSFMPELRLEEHKKTDDVPYQT 408
Query: 359 KI-------------------------SGLVEKYRPD--AIIIDANNTGARTCDYLEMLG 391
+ ++EKY DA+N G+ L+ LG
Sbjct: 409 WVNRGLLTLTSGAFGTKTDYKYIISHLKEIIEKYDLTILECGYDAHNAGS-FLSDLDFLG 467
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH--SGLIQNLKSLKSFIVPN 449
+ V ++++ V A ++ ++ + L++ + + +
Sbjct: 468 CDLTEVKQSAKSLNDAT---------VDFALSIDAKQVMYDKKNELLKWSIGNATTTMNS 518
Query: 450 TGELAIES--KRVKGAKSTDYSDGLM 473
GE+ I+ K+ + D D ++
Sbjct: 519 FGEIKIDKQLKKKRI----DPVDAII 540
>gi|307280628|ref|ZP_07561676.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0860]
gi|306503994|gb|EFM73211.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0860]
Length = 425
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 57/433 (13%), Positives = 122/433 (28%), Gaps = 56/433 (12%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
++ GRG GK++ A ++ + R ++ + + + L+ +++ ++ +
Sbjct: 26 SDILNIICKGGRGSGKSSDIAHIIT-QLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIEQ 84
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H F+ L +Y + ER + + +
Sbjct: 85 QGVTHLFKFNKSPLRITYIP-----------RGNYMIFRGAQNPERIKSLKDSRFPFAIG 133
Query: 195 IINDEASGTPDVINLGILGFLTERN-----ANRFWIMTSNPRRLSGKFYEIFNK--PLDD 247
I + + I L +F+ + P+R + + D+
Sbjct: 134 WIEELGEFKTEDEVTTITNSLLRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPDN 193
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
+ I F + + A + R E G+ + +E+
Sbjct: 194 TFVHHSTYKDNPFISREFLKEVEAARDRNLLRARWEYDGEAIGSGV-VPFSNLKVEKGCI 252
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKIS 361
+ + + G D D V G K R K
Sbjct: 253 TDEMVANFDNIRNGLDFG-YATDPLAFVRWHYDKKKNGIYAVDEIYGVKISNREFAQKAK 311
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ Y+ D I D+ + G V G K+ D
Sbjct: 312 --AKGYQSDRIASDSAEP-KSIAELNNEHGM--GHVFGVKKGPDSVQYGE---------- 356
Query: 422 DWLEFASLINHSGL-----IQNLKSLKSFIVPNTG--ELAIESKRVKGAKSTDYSDGLMY 474
+WL+ I L + +++ + G + +E K D Y
Sbjct: 357 EWLDDLDFICIDPLRTPNIAKEFENI-DYQTDKDGNPKPRLEDKDNHTI------DATRY 409
Query: 475 TFAENPPRSDMDF 487
F+E+ ++++ F
Sbjct: 410 AFSEDMEKNNVSF 422
>gi|110804033|ref|YP_699944.1| putative phage terminase, large subunit [Clostridium phage
phiSM101]
gi|110684534|gb|ABG87901.1| putative phage terminase, large subunit [Clostridium phage
phiSM101]
Length = 581
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/295 (13%), Positives = 81/295 (27%), Gaps = 25/295 (8%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVIC 112
Q + + K + R K+ LN+ + + L + P V C
Sbjct: 79 QDFIVGSIFGWVCKGTG--YRRFKKSYVQLARKNAKSLLNSGIGIKLAAFDKYPNAQVYC 136
Query: 113 LANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A Q + +W + K++ + P+ + F+++ + +LG D+
Sbjct: 137 TATKMKQAR-IVWKQARKFIEIEPDLREIFKIKDHDAIIESLINGGEIMALGRDTGT--I 193
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF--WIMTSN 229
D + H + ++ D + + + I N + W N
Sbjct: 194 DGFDPHGGIIDEYHSHKTNQMVKLLEDGSVNQAESLISIITTAGFNLNGPCYKEWEYCKN 253
Query: 230 -----PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID---------PSFHEGIIARYGL 275
Y DD + + F E + G
Sbjct: 254 VLEGIVNNDEYFIYIAQMDVEDDIWDPNNWLKANPLVAKLPKGLENLKRFAEESKQKGGD 313
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEE-ALNREPCPDPYAPLIMGCDIAEEGG 329
D + + + D +I ++ + A G D++ G
Sbjct: 314 DLKNFLTKSLNIWYEFSNDQYIGPSVWKVGASKLTLENFKGKTCYAGLDLSSGGD 368
>gi|268601026|ref|ZP_06135193.1| phage terminase [Neisseria gonorrhoeae PID18]
gi|268585157|gb|EEZ49833.1| phage terminase [Neisseria gonorrhoeae PID18]
Length = 417
Score = 52.6 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 89/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 41 QRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSH 100
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 101 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 153
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ + + G+
Sbjct: 154 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEG 213
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 214 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 273
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 274 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNATGIEE 333
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 334 GIRAARMLFPKVYFDK 349
>gi|108760613|ref|YP_630116.1| putative phage terminase, ATPase subunit [Myxococcus xanthus DK
1622]
gi|108464493|gb|ABF89678.1| putative phage terminase, ATPase subunit [Myxococcus xanthus DK
1622]
Length = 187
Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 48/178 (26%), Gaps = 18/178 (10%)
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGG--DNTVVVLRRG-PVIEHLFDWSKTDLRTTNNKI 360
A + P P L+ G D+ + V G L + +
Sbjct: 1 MAQDASDVPVPQGRLVAGFDVGRTRDRSELAVFEEVEGRFTCRLLKSFEGVPFAEQEAHL 60
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV-K 419
++ + +D + G + L V A +
Sbjct: 61 RRILSVLPVARLSVDRSGIGMNLAENLARDFPQVVEENFTNEAKER----------WATD 110
Query: 420 MADWL--EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
L +L L+ + S+K V +G+++ +++R D +
Sbjct: 111 FKILLQRRDVTLPRQRELVGQIHSIKR-RVLPSGKVSFDAERTNRG-HADKFWAVALA 166
>gi|240127880|ref|ZP_04740541.1| putative phage associated protein [Neisseria gonorrhoeae
SK-93-1035]
Length = 424
Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 90/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 48 QRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLAHFYEITDFEIRGANGTLFVFSGLQSH 107
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 108 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 160
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ ++ + G+
Sbjct: 161 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEG 220
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 221 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 280
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 281 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNATGIEE 340
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 341 GIRAARMLFPKVYFDK 356
>gi|218529683|ref|YP_002420499.1| hypothetical protein Mchl_1708 [Methylobacterium chloromethanicum
CM4]
gi|218521986|gb|ACK82571.1| protein of unknown function DUF264 [Methylobacterium
chloromethanicum CM4]
Length = 421
Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/365 (13%), Positives = 93/365 (25%), Gaps = 42/365 (11%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLWLM----STRPGI--S 109
+E H P P + A+ GRG GKT A V L P
Sbjct: 10 RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAYGDPVFSPEPVER 69
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + + ++ + L P L +
Sbjct: 70 IALVGETFADVRDVM-----------------IEGPSGLLALPRLGGALPVWQPSRRRVV 112
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV---INLGILGFLTERNANRFWIM 226
+ A+ +DE + + ++ G +
Sbjct: 113 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAEATYDMIQFGLRLGTHPRGLVTT 172
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
T P L + + + + + PSF E ++ RY + + R E+ G
Sbjct: 173 TPRPVPLIRRLLADPRTVVTRSRT----ADNAQNLAPSFLEEVVGRYA-GTRLGRQELDG 227
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVV-----VLRR 338
+ + D+ + IE R P + + D + G D +
Sbjct: 228 ELIEDRPDALWTRDSIE--RTRVFEAPPLQRIAVAIDPPASSRVGADACGIVAAGLAADG 285
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
+ + L + DA++ + N G L V V
Sbjct: 286 TAYVLADATLEQAAPVVWARAALALYHRLAADALVAEVNQGGEMVVAVLAEADPSVPVVT 345
Query: 399 GQKRA 403
+
Sbjct: 346 VRATR 350
>gi|323487253|ref|ZP_08092556.1| hypothetical protein HMPREF9474_04307 [Clostridium symbiosum
WAL-14163]
gi|323399479|gb|EGA91874.1| hypothetical protein HMPREF9474_04307 [Clostridium symbiosum
WAL-14163]
Length = 550
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/353 (12%), Positives = 99/353 (28%), Gaps = 41/353 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW--LMSTRPGIS 109
+WQ + ++ + + I GR GKT + ++ + + G
Sbjct: 70 ETWQKSTVSIMFGIVDEAGIR---IFREFLIVIGRKNGKTLFASGIIAYCLFLDGEYGAK 126
Query: 110 VICLANSETQL---KTTLW------AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDV--- 157
V C+A Q + W E+ + + + E + S+ + +
Sbjct: 127 VFCVAPKLDQADLVYQSFWQTIQKEPELQALIKRRKSDFYVESTNSSVKKIAFNAKKSDG 186
Query: 158 --LHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
H ++ + + E + +G + I+ IN GI L
Sbjct: 187 FNPHLTVCDEVASWPGDQGLKQYEVMKSALGARKQPIILSISTSGY-----INEGIYDEL 241
Query: 216 TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI-----DPSFHEGII 270
+R F + S +RL+ Y I ++ W ++ + E I
Sbjct: 242 VKRATR-FLLGDSKEKRLAPFLYMI--DDVEKWNDINELRKSNPNLGVSVSVDYLIEEIA 298
Query: 271 ARYGLDS--DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP--LIMGCDIAE 326
G S + Q +++ +E+ + + + G D+++
Sbjct: 299 IAEGSLSKKAEFMTKY-CNIKQNSTQAWLSAQDVEKCCGNPLRLEDFRDSYCVGGIDLSQ 357
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+ ++F KI +
Sbjct: 358 TTDLTACIATIEKNEKLYVFAQFFLP----AGKIEEATIRDGLPYQAYVQRGI 406
>gi|256956800|ref|ZP_05560971.1| terminase large subunit [Enterococcus faecalis DS5]
gi|256947296|gb|EEU63928.1| terminase large subunit [Enterococcus faecalis DS5]
Length = 424
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 57/433 (13%), Positives = 121/433 (27%), Gaps = 56/433 (12%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
++ GRG GK++ A ++ + R ++ + + + L+ +++ ++ +
Sbjct: 25 SDILNIVCKGGRGSGKSSDIAHIIT-QLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIEQ 83
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H F+ L +Y + ER + + +
Sbjct: 84 QGVTHLFKFNKSPLRITYIP-----------RGNYMIFRGAQNPERIKSLKDSRFPFAIG 132
Query: 195 IINDEASGTPDVINLGILGFLTERN-----ANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
I + + I L +F+ + P+R + +
Sbjct: 133 WIEELGEFKTEDEVTTITNSLLRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPEN 192
Query: 250 RF--QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
F + I F + + A + R E G+ + +E+
Sbjct: 193 TFVHHSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGEAIGSGV-VPFSNLKVEKGCI 251
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKIS 361
+ + + G D D V G K R K
Sbjct: 252 TDEMVANFDNIRNGLDFG-YATDPLAFVRWHYDKKKNGIYAVDEIYGVKVSNREFAQKAK 310
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ Y+ D I D+ + G V G K+ D
Sbjct: 311 --AKGYQSDRIASDSAEP-KSIAELNNEHGMS--HVFGVKKGPDSVQYGE---------- 355
Query: 422 DWLEFASLINHSGL-----IQNLKSLKSFIVPNTG--ELAIESKRVKGAKSTDYSDGLMY 474
+WL+ I L + +++ + G + +E K D Y
Sbjct: 356 EWLDDLDFICIDPLRTPNIAKEFENI-DYQTDKDGNPKPRLEDKDNHTI------DATRY 408
Query: 475 TFAENPPRSDMDF 487
F+E+ ++++ F
Sbjct: 409 AFSEDMEKNNVSF 421
>gi|126461063|ref|YP_001042177.1| phage terminase [Rhodobacter sphaeroides ATCC 17029]
gi|126102727|gb|ABN75405.1| phage Terminase [Rhodobacter sphaeroides ATCC 17029]
Length = 535
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/361 (12%), Positives = 97/361 (26%), Gaps = 62/361 (17%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGI 108
WQ + + + V + + RG KT L A L L + PG
Sbjct: 45 DPWQERIVRRIYGPRHSDGTR---IVRRVVLLLPRGNRKTALCAALTLLHLIGPEREPGG 101
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
++ A++ Q L+ E + + + + L + S + +G
Sbjct: 102 LIVSAASAHEQAME-LFNEAALIVQN------DQRLAKRLSVREYVSKISFKDMGTRYIA 154
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD----VINLGILGFLTERNANRFW 224
++ + H +I DE + L +
Sbjct: 155 VASDGKV-----------QHGKTPNVVIADELHAWEGRAGLRQWEALDSALVKVPGTLMI 203
Query: 225 IMTSNPRRLSGKFYE----------------------IFNKPLDDWKRFQIDTRTVEGID 262
+ +++ R ++ +P DDW + G+
Sbjct: 204 VASTSGRGQENLAWQTVDYAIKVQKGEIDDPATLPVIFMAEPEDDWTDEDLWRLVNPGLA 263
Query: 263 PSFHE--------GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA---LNREPC 311
+ + + D ++ Q F+ +++ +E ++ E
Sbjct: 264 HGYPDIEGFRDKARKAVHSPFERDSFLQFNLNRWLDQTTSPFVEMHVYDEGAHEVDLEEL 323
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLRR-GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
AP +G D+++ VV + G W + Y
Sbjct: 324 EMVQAPCWLGVDLSKNEDLTCVVAAWQDGQDGYQAHPWFFCPEDNLRARGERHGVDYVSW 383
Query: 371 A 371
A
Sbjct: 384 A 384
>gi|300173892|ref|YP_003773058.1| phage terminase large subunit [Leuconostoc gasicomitatum LMG 18811]
gi|299888271|emb|CBL92239.1| phage terminase, large subunit, pbsx family [Leuconostoc
gasicomitatum LMG 18811]
Length = 427
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/334 (13%), Positives = 94/334 (28%), Gaps = 26/334 (7%)
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
N + A RG GK+ A V+ + T+P ++ + L + + + +
Sbjct: 17 APMFNSKARYIAYKGSRGSGKSEGVATKVILDIVTKPYVNWLVLRRYANTNRQSTFTLLQ 76
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
K + + F+ + + R + T +
Sbjct: 77 KVANRMGVGSLFQFNGSLP------------EITFKPTGQKILFRGADKPLSITSISVET 124
Query: 190 TYGMAIINDEASGTP-----DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
+ +EA + ++ + G + + + ++T NP + F
Sbjct: 125 GNLCRLWVEEAYQMELEESFETVDESMRGVIDDPDGFYQTVLTFNPWNERHWLKKRFFDE 184
Query: 245 LDDWK---RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ +D + ++ + RV V G++ I
Sbjct: 185 DTRVNNSLAITTTYKDNPFLDVDYVNRLLEMKKRNPRRARVAVDGEW-GVAEGLIYENTI 243
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV---IEHLFDWSKTDLRTTNN 358
+E+ R + ++ G D T + I L + K + T
Sbjct: 244 VEKFDIR--EVLKGSHIVRGMDWGYGPDPTTFIEYAINTKTKDIYILKEMYKQHMLTDEI 301
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
V Y+ I D N G R L G
Sbjct: 302 FKWLYVHGYQQGDIRADYANGGDRMIQELRNKGI 335
>gi|284164527|ref|YP_003402806.1| hypothetical protein Htur_1243 [Haloterrigena turkmenica DSM 5511]
gi|284014182|gb|ADB60133.1| hypothetical protein Htur_1243 [Haloterrigena turkmenica DSM 5511]
Length = 514
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/279 (13%), Positives = 74/279 (26%), Gaps = 31/279 (11%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
A AG G GK+ L A +L P + + T+ + + + + + L
Sbjct: 79 VAFLAGYGSGKSILGARWLLAQALAHPDSRFLAMGVDFTKARDSTFRILCEQLPGARTAL 138
Query: 140 W---FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
S A + +L S +++ D F +
Sbjct: 139 RTGTINGPESSPIVADFNRGAHRLTLTNGSVIVLGAADSWNRYAGDEFGAI-------WL 191
Query: 197 NDEASGTPD--VINLGILGFLTERNAN--RFWIMTSNPRRLSGKFYEIFNKPLDDWK--- 249
++ + D + + G L + W +T N + + E D
Sbjct: 192 DEPSHYETDLHDLLEMLGGRLRGVAGPKVQCWTLTGNGYNDAWEILEQRQDSTGDPIGLA 251
Query: 250 --RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ--------QDIDSFIPL 299
+ T +D E ++G + G IP
Sbjct: 252 IELVRASTLDNPYLDAGTRERYERQFGDTDREAQALRGGFAAAQGLVYTKFSRDTHVIPH 311
Query: 300 NIIEEALNREPCPDPYAPLI----MGCDIAEEGGDNTVV 334
+ + + Y + ++ + D VV
Sbjct: 312 AAATDRVIADWRVYGYDHGWNDPRILLEVGKTPRDQLVV 350
>gi|268686275|ref|ZP_06153137.1| phage terminase [Neisseria gonorrhoeae SK-93-1035]
gi|268626559|gb|EEZ58959.1| phage terminase [Neisseria gonorrhoeae SK-93-1035]
Length = 417
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 90/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 41 QRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLAHFYEITDFEIRGANGTLFVFSGLQSH 100
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 101 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 153
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ ++ + G+
Sbjct: 154 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEG 213
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 214 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 273
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 274 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNATGIEE 333
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 334 GIRAARMLFPKVYFDK 349
>gi|240014419|ref|ZP_04721332.1| putative phage associated protein [Neisseria gonorrhoeae DGI18]
gi|240016852|ref|ZP_04723392.1| putative phage associated protein [Neisseria gonorrhoeae FA6140]
gi|240120865|ref|ZP_04733827.1| putative phage associated protein [Neisseria gonorrhoeae PID24-1]
gi|254493400|ref|ZP_05106571.1| phage terminase [Neisseria gonorrhoeae 1291]
gi|226512440|gb|EEH61785.1| phage terminase [Neisseria gonorrhoeae 1291]
Length = 424
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 90/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 48 QRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSH 107
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 108 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 160
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ ++ + G+
Sbjct: 161 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEG 220
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 221 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 280
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 281 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNAAGIEE 340
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 341 GIRAARMLFPKVYFDK 356
>gi|194098237|ref|YP_002001293.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
gi|240125445|ref|ZP_04738331.1| putative phage associated protein [Neisseria gonorrhoeae SK-92-679]
gi|268684040|ref|ZP_06150902.1| phage terminase [Neisseria gonorrhoeae SK-92-679]
gi|193933527|gb|ACF29351.1| putative phage associated protein [Neisseria gonorrhoeae NCCP11945]
gi|268624324|gb|EEZ56724.1| phage terminase [Neisseria gonorrhoeae SK-92-679]
Length = 424
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 90/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 48 QRPLRILCVREIQKSMRDTVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSH 107
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 108 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 160
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ ++ + G+
Sbjct: 161 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEG 220
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 221 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 280
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 281 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNATGIEE 340
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 341 GIRAARMLFPKVYFDK 356
>gi|59801465|ref|YP_208177.1| putative phage associated protein [Neisseria gonorrhoeae FA 1090]
gi|260440843|ref|ZP_05794659.1| putative phage associated protein [Neisseria gonorrhoeae DGI2]
gi|59718360|gb|AAW89765.1| hypothetical protein, putative phage associated protein [Neisseria
gonorrhoeae FA 1090]
Length = 424
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 90/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 48 QRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSH 107
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 108 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 160
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ ++ + G+
Sbjct: 161 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEG 220
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 221 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 280
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 281 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNATGIEE 340
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 341 GIRAARMLFPKVYFDK 356
>gi|295113782|emb|CBL32419.1| phage terminase, large subunit, PBSX family [Enterococcus sp. 7L76]
gi|315035888|gb|EFT47820.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0027]
Length = 425
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 57/433 (13%), Positives = 121/433 (27%), Gaps = 56/433 (12%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
++ GRG GK++ A ++ + R ++ + + + L+ +++ ++ +
Sbjct: 26 SDILNIVCKGGRGSGKSSDIAHIIT-QLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIEQ 84
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H F+ L +Y + ER + + +
Sbjct: 85 QGVTHLFKFNKSPLRITYIP-----------RGNYMIFRGAQNPERIKSLKDSRFPFAIG 133
Query: 195 IINDEASGTPDVINLGILGFLTERN-----ANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
I + + I L +F+ + P+R + +
Sbjct: 134 WIEELGEFKTEDEVTTITNSLLRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPEN 193
Query: 250 RF--QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
F + I F + + A + R E G+ + +E+
Sbjct: 194 TFVHHSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGEAIGSGV-VPFSNLKVEKGCI 252
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKIS 361
+ + + G D D V G K R K
Sbjct: 253 TDEMVANFDNIRNGLDFG-YATDPLAFVRWHYDKKKNGIYAVDEIYGVKVSNREFAQKAK 311
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ Y+ D I D+ + G V G K+ D
Sbjct: 312 --AKGYQSDRIASDSAEP-KSIAELNNEHGMS--HVFGVKKGPDSVQYGE---------- 356
Query: 422 DWLEFASLINHSGL-----IQNLKSLKSFIVPNTG--ELAIESKRVKGAKSTDYSDGLMY 474
+WL+ I L + +++ + G + +E K D Y
Sbjct: 357 EWLDDLDFICIDPLRTPNIAKEFENI-DYQTDKDGNPKPRLEDKDNHTI------DATRY 409
Query: 475 TFAENPPRSDMDF 487
F+E+ ++++ F
Sbjct: 410 AFSEDMEKNNVSF 422
>gi|293399332|ref|ZP_06643497.1| PBSX family phage terminase, large subunit [Neisseria gonorrhoeae
F62]
gi|291610746|gb|EFF39856.1| PBSX family phage terminase, large subunit [Neisseria gonorrhoeae
F62]
Length = 426
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 90/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 50 QRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSH 109
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 110 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 162
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ ++ + G+
Sbjct: 163 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEG 222
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 223 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 282
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 283 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNAAGIEE 342
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 343 GIRAARMLFPKVYFDK 358
>gi|291044162|ref|ZP_06569878.1| phage terminase [Neisseria gonorrhoeae DGI2]
gi|291012625|gb|EFE04614.1| phage terminase [Neisseria gonorrhoeae DGI2]
Length = 426
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 90/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 50 QRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSH 109
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 110 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 162
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ ++ + G+
Sbjct: 163 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMNKEDYGNIWEGRPRMVSEG 222
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 223 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 282
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 283 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNATGIEE 342
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 343 GIRAARMLFPKVYFDK 358
>gi|296532346|ref|ZP_06895082.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
gi|296267330|gb|EFH13219.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
Length = 480
Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/347 (11%), Positives = 85/347 (24%), Gaps = 44/347 (12%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + A RG GK+TL WL+S P ++ LA L ++ + + +
Sbjct: 45 RLLLMAFRGCGKSTLVGLYCAWLLSRWPETRILVLA-----ADHLLATKMVGTVRRIVER 99
Query: 139 HWFEMQSLSLHPAPWYSD--VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
H L P W D + +L + +
Sbjct: 100 HPLCRAILPEVPEAWAVDRFTVRRALALRDPSMLAAGLAGNITGA-RADVIICDDVEVAG 158
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI--- 253
N + +G + + + P + ++
Sbjct: 159 NCDTAGKRAELRERLAETEFILTPGGTLLYVGTPHCAESLYRTPEEGEPTLAGYRRLVVP 218
Query: 254 ------DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
+ + + R G ++ + P +I
Sbjct: 219 LLNAAGRSAWPQRFPAEDVARLRERVG--PIQFSRQMLLRPVAGAAARLDPGLLIRYRDE 276
Query: 308 REPCPDPYAPLI-----------MGCDIAE---EGGDNTVVVL----RRGPVIEHLFDWS 349
+ P++ D A GD +V+ + G H +
Sbjct: 277 LDYREAHGRPVLGLMGRRMVSGGGYWDPAYGRPGRGDGSVLAITYADGEGNHYLHRLHYL 336
Query: 350 KTDL-------RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
D +++ L ++ + ++ N G L
Sbjct: 337 THDPDQADDPATQQCRQVAALAREFWLPVLRVETNGIGRFLPALLRR 383
>gi|115379645|ref|ZP_01466728.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|115363355|gb|EAU62507.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
Length = 187
Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 48/178 (26%), Gaps = 18/178 (10%)
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGG--DNTVVVLRRG-PVIEHLFDWSKTDLRTTNNKI 360
A + P P L+ G D+ + V G L + +
Sbjct: 1 MAQDASDVPVPQGRLVAGFDVGRTRDRSELAVFEEVEGRFTCRMLRSFEGVPFAEQEAHL 60
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV-K 419
L+ + +D + G + L V A +
Sbjct: 61 RRLLSVLPVARLSVDKSGIGMNLAENLARDFPQVVEESFTNEAKER----------WATD 110
Query: 420 MADWL--EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
L +L L+ + S+K V +G+++ +++R D +
Sbjct: 111 FKILLQRRDVTLPRQRELVGQIHSIKR-RVLPSGKVSFDAERTNRG-HADKFWAVALA 166
>gi|56692599|ref|YP_164067.1| large terminase subunit [Pseudomonas phage B3]
gi|33338625|gb|AAQ13949.1|AF232233_31 large terminase subunit [Pseudomonas phage B3]
Length = 486
Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/227 (15%), Positives = 69/227 (30%), Gaps = 20/227 (8%)
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEALNREPCPD 313
++G+D + + I D + + E P D +F+ ++I E
Sbjct: 221 EIQGMDEAQYFDFIRAGCADEESFQQEYMC-NPADDDVAFLEYDLIASAEYPQTANWQQP 279
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
L G DI + D TV+ + G V+ ++R + + R +
Sbjct: 280 EGGRLFAGVDIGRKK-DLTVLWILELLGDVLYTRHVERLQNMRKSAQEAILWPWFQRCER 338
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCR-NRRTELHVKMADWLEF--AS 428
I IDA G D + + V+ + L + +E
Sbjct: 339 ICIDATGLGIGWADDAQD--------QFGEHRVEAVTFTPRVKEALAYPIRGAMEDHKVR 390
Query: 429 LINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + L+ + + G + ++R D L
Sbjct: 391 IPYDPKIRAALREV-TKQTTAAGNIRFTAERTADG-HADEFWALGLA 435
>gi|134295281|ref|YP_001119016.1| hypothetical protein Bcep1808_1170 [Burkholderia vietnamiensis G4]
gi|134138438|gb|ABO54181.1| protein of unknown function DUF264 [Burkholderia vietnamiensis G4]
Length = 458
Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/423 (11%), Positives = 113/423 (26%), Gaps = 53/423 (12%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT----LWAEVSKWLSLLPNKH 139
G GKT L + PG + + W ++ K
Sbjct: 27 GGSRSGKTFLLCRNIAMRAIKAPGSRHGIFRFRALHVHESIVLDTWPKMMKLAFPGVRWT 86
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + D G+D K +E + + MA ++
Sbjct: 87 MHKGDGYASIHTGGAEDSEVWFGGLDDKERVEKILG--KEFATLYFNESSQIPMASVDTA 144
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD----------DWK 249
+ + I G R + P + + K D+
Sbjct: 145 LTRLAQKVMTNIEGREPAPLKVRALFDCNPPSKAHWTYKRFVLKVDPETGDPLPNPGDYA 204
Query: 250 RFQIDTRTV-EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE-ALN 307
FQI+ + + + + + G+ + + + G+F + IE+
Sbjct: 205 HFQINPGDNAQNLSADYLDTLK---GMSPRLQKRFLRGEFSDATPNQLFAEETIEKWRHG 261
Query: 308 REPCPDPYAPLIMGCDIAEEGG------DNTVVVLR----RGPVIEHLFDWSKTDLRTTN 357
+ + +++ D + G D +++ G K T
Sbjct: 262 TDQPLPDFVRVVVAVDPSGSGDVDNADNDAIGIIVVGLGTDGRAYVLDDCTVKAGPATWG 321
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ ++ +++ D ++ + N GA ++ R E
Sbjct: 322 SVVASAYDRHAGDVVVGETNYGGAMVQHVVQTARARTPFKQVTASRGKA-----VRAEPF 376
Query: 418 VKMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + + + L L + G + G +S + +D L++
Sbjct: 377 SSLYEQGKVRHVGIF--RELEDELTA-----FSTVGYI--------GERSPNRADALIWA 421
Query: 476 FAE 478
E
Sbjct: 422 LTE 424
>gi|148548588|ref|YP_001268690.1| hypothetical protein Pput_3380 [Pseudomonas putida F1]
gi|148512646|gb|ABQ79506.1| protein of unknown function DUF264 [Pseudomonas putida F1]
Length = 433
Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 56/432 (12%), Positives = 109/432 (25%), Gaps = 63/432 (14%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
AG G GKT + + + P I A + Q++ + + + W
Sbjct: 22 VAGFGSGKTWVGCAALCKHVWEWPRIDSGYFAPTYPQIRDIFFPTIEEV-----AFDWGL 76
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ Y + S E+P T VG + + D
Sbjct: 77 KVKTK--------ESDKEVEFYSGGQYRSTTICRSMEKPQTIVGFKIGHALVDELDVLPA 128
Query: 203 TPDVI-NLGILGFLT--ERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRFQI 253
I+ + +T+ P + + + + + Q
Sbjct: 129 LKAEHAWRKIIARMRYNVPGLKNGVDVTTTPEGFKFVYQQFVKQLREKPALQGMYGLVQA 188
Query: 254 DTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
T E + P + ++ Y + + + GQF + S I + +
Sbjct: 189 STFDNELNLPPDYIPSLMESY--PAQLILAYLNGQFVNLNAGS-IYHAYDRKLNSCFDTV 245
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
+P PL +G D V V R + + D T + I + E+Y
Sbjct: 246 EPGEPLFIGMDFNVGKMAAIVHVKRPDGKPRAVDEL--IDGFDTPDMIRRIKERYWRHNG 303
Query: 373 II-----------DANNTGARTCDY-------LEMLGYHVYRVLGQKRAVDLEFCRNRRT 414
DA+ ++ + L G+ V D N
Sbjct: 304 NTYEKTCEIRIYPDASGGSRKSVNASETDIAILRQAGFSVIAPDANPPVKDRINAMN--- 360
Query: 415 ELHVKM----ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD 470
+ + + + + E + G + +
Sbjct: 361 AMFCNANGERRYLINPLRCP----TYADGLEQQVWAPNG------EPDKKSGVDHANDAG 410
Query: 471 GLMYTFAENPPR 482
G R
Sbjct: 411 GYFIHHDYPISR 422
>gi|307270085|ref|ZP_07551405.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX4248]
gi|306513580|gb|EFM82192.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX4248]
Length = 425
Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 57/434 (13%), Positives = 124/434 (28%), Gaps = 58/434 (13%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
++ GRG GK++ A ++ + R ++ + + + L+ +++ ++ +
Sbjct: 26 SDILNIVCKGGRGSGKSSDIAHIIT-QLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIEQ 84
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H F+ L +Y + ER + + +
Sbjct: 85 QGVTHLFKFNKSPLRITYIP-----------RGNYMIFRGAQNPERIKSLKDSRFPFAIG 133
Query: 195 IINDEASGTPDVINLGILGFLT-----ERNANRFWIMTSNPRRLSGKFYEIFNK--PLDD 247
I + + I L + +F+ + P+R + + D+
Sbjct: 134 WIEELGEFKTEDEVTTITNSLLRGELGDGLFYKFFFSYNPPKRRQSWVNKKYESSFQPDN 193
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
+ I F + + A + R E G+ + +E+
Sbjct: 194 TFVHHSTYKDNPFISREFLKEVEAARDRNPLRARWEYDGEAIGSGV-VPFSNLKVEKGCI 252
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKIS 361
+ + + G D D V G K R K
Sbjct: 253 TDEMVANFDNIRNGLDFG-YATDPLAFVRWHYDKKKNGIYAVDEIYGVKISNREFAQKAK 311
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGY-HVYRVLGQKRAVDLEFCRNRRTELHVKM 420
+ Y+ D I D+ + G HV+ V +V+
Sbjct: 312 --AKGYQSDRIASDSAEP-KSIAELNNEHGMGHVFGVKKGPDSVEYGE------------ 356
Query: 421 ADWLEFASLINHSGL-----IQNLKSLKSFIVPNTG--ELAIESKRVKGAKSTDYSDGLM 473
WL+ I L + +++ + G + +E K D
Sbjct: 357 -QWLDDLDFICIDPLRTPNIAKEFENI-DYQTDKDGNPKPRLEDKDNHTI------DATR 408
Query: 474 YTFAENPPRSDMDF 487
Y F+E+ ++++ F
Sbjct: 409 YAFSEDMEKNNVSF 422
>gi|229162517|ref|ZP_04290478.1| DNA packaging protein Gp17 [Bacillus cereus R309803]
gi|228620996|gb|EEK77861.1| DNA packaging protein Gp17 [Bacillus cereus R309803]
Length = 525
Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/334 (14%), Positives = 97/334 (29%), Gaps = 7/334 (2%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP-NKHW 140
I+ R IG +T++ L LW+ RP + + ++ + T+L+ ++ LP +K
Sbjct: 57 IAKARQIGFSTMSLALCLWMSMNRPRTNYMIVSYKQES-STSLFDKLKMMYDDLPHDKFK 115
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
F + + + +L TY F + N + + ++A
Sbjct: 116 FPKDVQNNRGQMKFDNGSSITLATAGGKDVGRGTTYEYILLSEFAFYENQESILLSAEQA 175
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
L I N + M + K + K+F+ D E
Sbjct: 176 LAKSKTSKLVIETTSNGFNPYQKLFMNAYKGNSKYKAFFFPFYSSSYAKQFKDDYDEAEA 235
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
D + + + Q + +++ L + P P+
Sbjct: 236 WYKLD-NKGKRLTKDDLEQEEIFLHNQGATLKQLMWRRWKLLDMTLQQFYQEFPATPMES 294
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D +V R + + L + + I+ + K + +
Sbjct: 295 FISSGLNVFDQQKIVERLKYIKKPLLYKNVK--MVIPDSIAKYIGKSLMIYELPKQSVRY 352
Query: 381 ARTCDYLEMLGYHV--YRVLGQKRAVDLEFCRNR 412
D G +L L F N+
Sbjct: 353 YGGVDTASGSGGDYSTISILNADGEQVLSFYDNK 386
>gi|187933480|ref|YP_001886573.1| hypothetical protein CLL_A2384 [Clostridium botulinum B str. Eklund
17B]
gi|187721633|gb|ACD22854.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
Length = 519
Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/293 (9%), Positives = 78/293 (26%), Gaps = 41/293 (13%)
Query: 24 IKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAIS 83
+ F+ +F +K + F Q +F++ +D++ I
Sbjct: 10 VWNDPILFIQNFLKITDKNGKIVPFIL-NPMQKDFIKNLDSYN--------------IIL 54
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
R G + L ++ T+P + + L++++ + + ++ + LPN
Sbjct: 55 KARQGGMSVAICGLAIFYAVTQPNSTCMLLSHNDESTRAI-FNKLKNIYNSLPN------ 107
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
++ S E +
Sbjct: 108 -----------VIRPKLIRNNRAELQLANGSIISCSTMGHTDKSRGNTLKLCHISEFAFV 156
Query: 204 PDVINL----GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
+ I + + N N T+N Y K + +K F +
Sbjct: 157 KSDVAEKQLLAIEQAI-QANGNLIIESTANGLNHYNILYNKAKKNENAYKGFFYNYID-- 213
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
F + + ++ + + ++ + ++ + +
Sbjct: 214 -TSCMFIDEYEKYNNIFKNINGHKFGEKDLTEEEKELLKIDGMTLNIICWRRL 265
>gi|93007440|ref|YP_579204.1| terminase large subunit [Streptomyces phage mu1/6]
gi|90568518|gb|ABD94197.1| terminase large subunit [Streptomyces phage mu1/6]
Length = 448
Score = 51.8 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 60/437 (13%), Positives = 119/437 (27%), Gaps = 79/437 (18%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRP-------GISVICLANSETQLKTTLWAEVSKWLSLLP 136
GRG GKT A ++ ++ P G + +A ++ +
Sbjct: 58 GGRGTGKTDGCARFMVSHVNGPPCDDRIPGGHRMSIIAPTQGDA-----------VESAV 106
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
N + ++ T + G+ +
Sbjct: 107 NGPSGLRAHDPRVVLRTTVGGTYARWPSGAEAKVFGAHTPDDVERLRSGGNRC----LVW 162
Query: 197 NDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+EA+ + +G + T PR+ + D +
Sbjct: 163 LEEAAAMRYLGPALAHSAMGLRIGPRPHYIASTTPKPRK-----EIVELLARPDVITTRG 217
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
TR + + ++A+Y + + R E+ G+ Q + +++ R P
Sbjct: 218 RTRDAHHLPQMMRDKLVAQYA-GTRLERQELDGEVLQDVDGALWSWPLLDRL--RVGAPM 274
Query: 314 PYAPLIMGCDIAEEG---GDNTVVVL----------------RRGPVIEHLFDWSKTDLR 354
P + +++ D A D T +V+ R V++ L
Sbjct: 275 PMSRIVVAIDPAVSNTAESDETGIVVVGLAAELMPDKLGQLQRHAYVLDDLSGKYHPH-- 332
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRT 414
+K+ D II + NN G L + AV + RR
Sbjct: 333 EWAAVALEAYDKWGADRIIGEVNNGGDLIRHTLHSVRPGAPF-----AAVTASRGKQRRA 387
Query: 415 ELHVKMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
E + + + L + S ++ G S D D L
Sbjct: 388 EPIAALYEQHRIHHVGSFP--ELEDEMTS---WVPGEPG-------------SPDRMDAL 429
Query: 473 MYTFAENPPRSDMDFGR 489
++ ++ F
Sbjct: 430 VWAATHLMVKARGSFAA 446
>gi|301300723|ref|ZP_07206908.1| putative phage terminase, large subunit [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851661|gb|EFK79360.1| putative phage terminase, large subunit [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 590
Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/299 (13%), Positives = 82/299 (27%), Gaps = 24/299 (8%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
+ WQ + + +G + GR GKTTL + L ++ G +
Sbjct: 111 QPWQHFIVGSMFGWVHRDTG--LRRFREGLVFVGRKNGKTTLESGLADYMAGFDGERGAN 168
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCS 161
V LAN++ Q + L+ E + P + + P ++ +
Sbjct: 169 VYFLANAQVQARK-LYDESKAMIEDSPYLAKRFVTTRSEIRFPKTNSTIVPMSAEKNNKD 227
Query: 162 LGIDSKHYSTMCRTYSEE----RPDTFVGHHNTYGMAIINDEASGTPDVINLGI---LGF 214
Y + G + I+ + I
Sbjct: 228 GENVHFAVFDEIHEYKDYFLISAMKQARGARLQPLIMYISTAGYVLDGPLMDFIDNGKEA 287
Query: 215 LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
L++ +A+ L+ + + W + + ++ ++ R
Sbjct: 288 LSDYDAHVDERTF---YYLASLDKVEESDDPELWIKANPNLCLMDTVNLISDYIKDKRTP 344
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNT 332
+ + F D SF+ + I + I G D++E
Sbjct: 345 AEYATWLTKQFNIFSSTDELSFVTIETINKNKRIIDEDTLLGRSCIGGYDLSETQDFTA 403
>gi|300214520|gb|ADJ78936.1| Terminase large subunit [Lactobacillus salivarius CECT 5713]
Length = 565
Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/299 (13%), Positives = 84/299 (28%), Gaps = 24/299 (8%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
+ WQ + + +G + GR GKTTL + L ++ G +
Sbjct: 86 QPWQHFIVGSMFGWVHRDTG--LRRFREGVVFVGRKNGKTTLESGLADYMAGFDGERGAN 143
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD-----VLHCSLGI 164
V LAN++ Q + L+ E + P + + S P + +
Sbjct: 144 VYFLANAQVQARK-LYDESKAMIEHSPYLAKRFVTTRSEIRFPKTNSTIVPMSVEKKNKD 202
Query: 165 DSKHYSTMCRTYSEER-------PDTFVGHHNTYGMAIINDEASGTPDVINLGI---LGF 214
+ + E + G + I+ + I
Sbjct: 203 GENVHFAVFDEIHEYKDYFLISAMKQARGARLQPLIMYISTAGYVLDGPLMDFIDNGKEA 262
Query: 215 LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
L++ +A+ L+ + + W + + ++ ++ R
Sbjct: 263 LSDYDAHVDERTF---YYLASLDKVEESDDPELWIKANPNLCLMDTVNLISDYIKDKRTP 319
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNT 332
+ + F D SF+ + I + I G D++E
Sbjct: 320 AEYATWLTKQFNIFSSTDELSFVTIETINKNKRMIDEDTLLGRSCIGGYDLSETEDFTA 378
>gi|240112597|ref|ZP_04727087.1| putative phage associated protein [Neisseria gonorrhoeae MS11]
gi|268598667|ref|ZP_06132834.1| phage terminase [Neisseria gonorrhoeae MS11]
gi|268582798|gb|EEZ47474.1| phage terminase [Neisseria gonorrhoeae MS11]
Length = 424
Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/316 (10%), Positives = 89/316 (28%), Gaps = 27/316 (8%)
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L+ E+ K + ++ + + + + + +++
Sbjct: 48 QRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSH 107
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ + +F G + +E G + + + + + T NP + +
Sbjct: 108 TVDSIKSFEGI-----DIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWI--TLNPDMETDE 160
Query: 237 FYEIF-NKPLDDWKRFQIDTRTVEGIDPS-FHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y F P +D +I+ R + E + A+ + + G+
Sbjct: 161 TYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMSKEDYGNIWEGRPRMVSEG 220
Query: 295 SFIPLNIIEEALNREPCPDPYA---PLIMGCDIAEEGGDNTVVVLRRGPVIEHL--FDWS 349
+ I + + PY P+ D+ +V R + + + +
Sbjct: 221 AVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDT 280
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDA------NN-------TGARTCDYLEMLGYHVYR 396
L ++ L ++ D + D TG +
Sbjct: 281 HRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNAAGIEE 340
Query: 397 VLGQKRAVDLEFCRNR 412
+ R + + ++
Sbjct: 341 GIRAARMLFPKVYFDK 356
>gi|309812665|ref|ZP_07706409.1| putative phage terminase, large subunit [Dermacoccus sp. Ellin185]
gi|308433360|gb|EFP57248.1| putative phage terminase, large subunit [Dermacoccus sp. Ellin185]
Length = 488
Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/349 (12%), Positives = 91/349 (26%), Gaps = 39/349 (11%)
Query: 1 MSRELPTNPE---TEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLE 57
M+ L P+ T L W FV + + LE F R WQ E
Sbjct: 1 MTGALKAGPKARVTADPLDFKGWPAGRAERRIRFVETYLRVPKGAGALEPFVL-RPWQRE 59
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI-SVICLANS 116
++ + +S R GKT L A L + + P V+ +A+
Sbjct: 60 IVD----------GAFAAGIRTALVSLPRANGKTALAAALAVAELFAGPPSAEVLVVASD 109
Query: 117 ETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC-- 173
+ Q + + L P ++ + + + ++ + H
Sbjct: 110 QRQA-NIALRMAKRMIELSPELAERAQIYADRIAVPENDATMIALPADPGALHGWDPSLL 168
Query: 174 --------RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
E + G I+ ++ V+ + + F
Sbjct: 169 VVDELHVVSEAVWEAVTSMSGKRPESLTLAISTPSTSPDCVMWSLVEHGRAGTDPAFFLR 228
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
+ P D+ + + + V R
Sbjct: 229 EFAAPDG---------CATDDEAAWAAANPALGDFLSADGLAAARRTLRE--PVFRQLRL 277
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV 334
GQ+ P + + + + +++ D + G +V
Sbjct: 278 GQWVTGSDAWL-PWGAWDALAAPDVAVERGSRVVLAFDGSASGDSTALV 325
>gi|170695979|ref|ZP_02887118.1| Terminase [Burkholderia graminis C4D1M]
gi|170139163|gb|EDT07352.1| Terminase [Burkholderia graminis C4D1M]
Length = 603
Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/279 (11%), Positives = 67/279 (24%), Gaps = 25/279 (8%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV-I 111
WQ + + + + + G+G GK+ L A + L++M +
Sbjct: 87 DWQKFIVGSLFGWLREDGSR---RFREAYVEGGKGCGKSPLAAGIGLYMMLADNEQRAEV 143
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A + L+ + + L P W
Sbjct: 144 YAAATRRDQAMVLFRDAVAMVQLSPRLREATTTQGRD-DRVWNIGHRRSGSFFRPIASDE 202
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN---------ANR 222
++ H +IN +G I +T +
Sbjct: 203 SGQSGPRPHCGLIDEIHEHRNGTVINIMRAGKKGRRQPLIF-MITNSGFDRTSVCYEQHE 261
Query: 223 FWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDPSFH-EGIIARYG 274
+ I + F+ + + + + I P + E + G
Sbjct: 262 YAIRVAGGALADDSFFAFACSLDETDDPFESEDCWIKANPSLGQTIKPDYLREQVHQARG 321
Query: 275 LDSDVTRVEVC--GQFPQQDIDSFIPLNIIEEALNREPC 311
+ S + V Q+ + + R P
Sbjct: 322 MPSLASTVRRLNFCQWVDAEDPWIEGPLWFACEVGRPPE 360
>gi|207270776|ref|YP_002261418.1| gp2 [Listeria phage P40]
gi|204307991|gb|ACI00362.1| gp2 [Listeria phage P40]
Length = 430
Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/338 (12%), Positives = 92/338 (27%), Gaps = 29/338 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG K++ ++ + P + + L+ T + + + +L +++
Sbjct: 38 GGRGSTKSSFAFIEIIDGIMRDPLANAVVYRKVADTLRNTTYEQCKWAMDILGVTPLWKL 97
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L + G + + + + F Y + ++ S
Sbjct: 98 NVNPLRMTY-----PNPETGQEQRILFQGADKATNTKGSMFSYGVCKYLIYEEAEQFSNA 152
Query: 204 PDVINLGILGFLTERNA-NRFWIMTSNPRRLSGKFYEIFN---KPLDDWKRFQIDTRTVE 259
++ + + + NP + G + + + V
Sbjct: 153 DEMETITVSWLRGDYGDIKPLVFYCYNPPKFRGHWLNKHVVSLRHSPNDLVHHSTFVAVA 212
Query: 260 GIDPSF-----HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI--IEEALNREPCP 312
P + +A L+ + R G+ + F L I+ + P
Sbjct: 213 NSHPEWLGEAFLRRALALKKLNPNRYRHVFLGEDVMTGNEVFPNLEYRPIDPSEYHHLTP 272
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVL-----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
G D + + + R I + I ++
Sbjct: 273 HE------GFDEGYTTDPSVWLQVYYDRKRDTLYIVKEVFLYHAKTKVIAETIRR--KQE 324
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
I ++ R D LE G + Y V K +VD
Sbjct: 325 GKHDTEIKGDSANPRVLDELEEYGLYTYGVKKGKGSVD 362
>gi|325529303|gb|EGD06247.1| phage terminase, large subunit [Burkholderia sp. TJI49]
Length = 411
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/261 (10%), Positives = 56/261 (21%), Gaps = 24/261 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GK+ LWL E K L K
Sbjct: 26 GGRGSGKSHFFGE--LWLEENVSDKFDFVC-----------LRETLKSLEFSVKKLLEAK 72
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + ++ + + G +EA
Sbjct: 73 IEAFNAGDYFEVQDRRILSRHGGVTIFEGMQNHTADSIKSLEGF-----DRAWFEEAQNA 127
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + L + + ++ ++P D + + +
Sbjct: 128 TEKSLTLLRPTLRKPGSQLWFGWNPGKPTDPIDVLLRGDEPPPDSIVVEANFMDNPWLPR 187
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
E + D D G + Q+ +E E +G D
Sbjct: 188 ELQEEMEYDKRRDPDKYAHVWLGGYQQRSEARVFKNWRVE-----EFERPEGTVFRLGAD 242
Query: 324 IAEEGGDNTVV-VLRRGPVIE 343
+ ++ G +
Sbjct: 243 WGFASDPSVLIRCDIDGNRLY 263
>gi|265753755|ref|ZP_06089110.1| terminase [Bacteroides sp. 3_1_33FAA]
gi|263235469|gb|EEZ20993.1| terminase [Bacteroides sp. 3_1_33FAA]
Length = 521
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 31/239 (12%)
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
+P++ + A G + P+++ IP + N P +
Sbjct: 244 NPNYIGSVAASGGKMAQAIIEGNFNVDPEENEKIPIPSTSAQGVFNNN--PAVNGDKWIT 301
Query: 322 CDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD--AIIIDANNT 379
D+A+ G DN V + G + SK+ R + ++ II DA
Sbjct: 302 VDLADYGTDNLVALAWDGFHAYDILILSKSTPRENAMAVKTFAFEHGTAESHIIFDAT-A 360
Query: 380 GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLI--- 436
G DY+ ++ L + + + ++++ +E +L L
Sbjct: 361 GRYFNDYIPDAVPYI--SLNKPFGLYQLTAMTVKDMCYIRLCKMIEEGNLTFDDKLAVQT 418
Query: 437 ----------------QNLKSLKSFIVPNTGELAIESKRVKG-----AKSTDYSDGLMY 474
S+ F +G+ + +K+ +S D D
Sbjct: 419 YTHQNLKYKVTVENEFMEECSVVRFDDMQSGKKRLWNKKKMNQMLGKGRSMDLLDPCAM 477
>gi|311120260|gb|ADP69217.1| putative terminase large subunit [Leuconostoc phage phiMH1]
Length = 581
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/369 (11%), Positives = 91/369 (24%), Gaps = 40/369 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS-- 109
W++ + + K S RG GKT L + L + +
Sbjct: 66 MDWEVFILGSLVGWRNKKTGG--KRYRKAIASIARGQGKTYLASVLATYDFFVQSYKKNN 123
Query: 110 --VICLANSETQLKTTLWAEVSKWLSLL---PNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
+I +N+ Q K L+ + ++ + K + + + S
Sbjct: 124 QDIIVASNTVAQSKK-LYGYIRGTINKMRQGIFKKRDKDIADTYETITMKSKNNVIVRLS 182
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF- 223
+ + + I + + L I NA
Sbjct: 183 ADGGKFDSYHATTAIFDEAGDQK-SREAFGKITSGQVKIEEALFLMISTAYQNPNAPLRE 241
Query: 224 ------WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
+ S L F ++++ D + + + GL S
Sbjct: 242 DIRNVSNDIKSGAHELDDFFLAVWSQDSPDEVFKPETWEKSNPLLGLESQHMKLLNGLVS 301
Query: 278 DV-----------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAE 326
+ V+ + + ++ L ++ A+ ++ + +G D +
Sbjct: 302 ERNTLMSQGKINDFLVKNMNIWLNAEENAAFSLEDVQNAVIQDFDMH-NRQVYIGFDNSM 360
Query: 327 EGGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
D + + R W K K G+ + D
Sbjct: 361 TSDDAALAFVFPYIDENGEQRFHLYQHSFIPWHKAGNIEAKEKQDGINYRDMEAKGFADI 420
Query: 377 NNTGARTCD 385
D
Sbjct: 421 TQHRRGLID 429
>gi|308172737|ref|YP_003919442.1| Phage terminase-like protein, large subunit [Bacillus
amyloliquefaciens DSM 7]
gi|307605601|emb|CBI41972.1| Phage terminase-like protein, large subunit [Bacillus
amyloliquefaciens DSM 7]
gi|328910855|gb|AEB62451.1| Phage terminase-like protein, large subunit [Bacillus
amyloliquefaciens LL3]
Length = 596
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/305 (10%), Positives = 74/305 (24%), Gaps = 32/305 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
+ WQ + + + GR GKTT+ + +++ G +
Sbjct: 111 QPWQHFVIGSIFGWVHKDTGIRKYREAVDFV--GRKNGKTTIISGTSNYMLGFDGERGAN 168
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHW-------------FEMQSLSLHPAPWYSD 156
V LANS+ Q + L+ E + P + ++ D
Sbjct: 169 VYVLANSQKQ-SSILFNESKAMIENSPYLDKRFKALRSEIRYETMKCTMQAMSAEKNNKD 227
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
+ + + + + G + I +
Sbjct: 228 GENLHFAVFDEIHEYVDYAL-INVMKKSRGMRKQPLIIYITTAGYVLDGPLMNFFEA--- 283
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
+ +Y ++ ++ + I ++ Y D
Sbjct: 284 ---GKECLENLEDDLDERTFYYLAKLDKPEEADDPRMWIKANPNIGLMDFVNLVTDYKKD 340
Query: 277 S------DVTRVEVCGQFPQQDIDSFIPLNIIE-EALNREPCPDPYAPLIMGCDIAEEGG 329
+ F D SF+ + I + + G D++E
Sbjct: 341 RKNPQELADWLTKQFNIFSDVDELSFVDVATINKNNKEIDIDLLKGRECVGGYDLSETED 400
Query: 330 DNTVV 334
+
Sbjct: 401 FTSAC 405
>gi|325509308|gb|ADZ20944.1| Phage terminase-like protein, large subunit [Clostridium
acetobutylicum EA 2018]
Length = 591
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/298 (11%), Positives = 69/298 (23%), Gaps = 18/298 (6%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--GIS 109
+ WQ + + + GR GKTTL + L + + G
Sbjct: 110 QPWQHFIIGSLYGWVHKDTGIRRFREGLIFV--GRKNGKTTLISGLSNYSVGFDYENGAR 167
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP--------WYSDVLHCS 161
V LAN+E Q L+ E + P S+ SD
Sbjct: 168 VYVLANAEQQAHE-LFDEAKAMVKTSPFLKKRYKPLRSIIRYEDKFSQIEARASDSKRLD 226
Query: 162 LGIDSKHYSTMCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE 217
+ + + G + I +
Sbjct: 227 GLNTHLGIFDEIHEFQDFKLINVIKKSRGARKQPLIIYITTAGYVLDGPLMQFYDDGKEC 286
Query: 218 RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
I ++ + +W + + ++ + + +
Sbjct: 287 LENIDDNIDERTFYYMAKLDSIEEAEEPRNWIKANPNIGLMDFVGLVSDWKKDRKSPQER 346
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVV 334
+ F S + + I + + G D++E + V
Sbjct: 347 ADWITKQFNIFADVTELSLVDIETINKNSKTIDIDTLKGLECTGGYDLSETEDFTSAV 404
>gi|315144732|gb|EFT88748.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX2141]
Length = 425
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 57/433 (13%), Positives = 121/433 (27%), Gaps = 56/433 (12%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
++ GRG GK++ A ++ + R ++ + + + L+ +++ ++ +
Sbjct: 26 SDILNIVCKGGRGSGKSSDIAHIIT-QLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIEQ 84
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H F+ L +Y + ER + + +
Sbjct: 85 QGVTHLFKFNKSPLRITYIP-----------RGNYMIFRGAQNPERIKSLKDSRFPFAIG 133
Query: 195 IINDEASGTPDVINLGILGFLTERN-----ANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
I + + I L +F+ + P+R + +
Sbjct: 134 WIEELGEFKTEDEVTTITNSLLRGELGNGLFYKFFFSYNPPKRRQSWVNKKYESSFQPEN 193
Query: 250 RF--QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
F + I F + + A + R E G+ + +E+
Sbjct: 194 TFVHHSTYKDNPFISREFLKEVEAARDRNLLRARWEYDGEAIGSGV-VPFSNLKVEKGCI 252
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKIS 361
+ + + G D D V G K R K
Sbjct: 253 TDEMVANFDNIRNGLDFG-YATDPLAFVRWHYDKKKNGIYAVDEIYGVKISNREFAQKAK 311
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ Y+ D I D+ + G V G K+ D
Sbjct: 312 --AKGYQSDRIASDSAEP-KSIAELNNEHGMS--HVFGVKKGPDSVQYGE---------- 356
Query: 422 DWLEFASLINHSGL-----IQNLKSLKSFIVPNTG--ELAIESKRVKGAKSTDYSDGLMY 474
+WL+ I L + +++ + G + +E K D Y
Sbjct: 357 EWLDDLDFICIDPLRTPNIAKEFENI-DYQTDKDGNPKPRLEDKDNHTI------DATRY 409
Query: 475 TFAENPPRSDMDF 487
F+E+ ++++ F
Sbjct: 410 AFSEDMEKNNVSF 422
>gi|327197990|ref|YP_004306307.1| putative terminase ATPase subunit [Lactococcus phage 949]
gi|306009310|gb|ADM73705.1| putative terminase ATPase subunit [Lactococcus phage 949]
Length = 565
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/363 (12%), Positives = 90/363 (24%), Gaps = 53/363 (14%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
+ I A RGI KT + P ++ ++ Q + +
Sbjct: 49 QRVYMRTFFRYKRVGIVASRGISKTYIELLSNYVKCILYPNNALAVAMPTKEQSAKVVKS 108
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
+ ++ P + + + V +D+ ++ G
Sbjct: 109 KFEEFWRDYPLLKNELIFNKCKFEKDYVKLVFKNGSTLDTLTV-----------GESSRG 157
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLT-ERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
+ IN I L RN + N + + +
Sbjct: 158 LRAQGITLEEIVDERMDAKTINEVIRPMLAQARNVVGHGVDKENEYSKTEAYVTTASHKQ 217
Query: 246 DD-WKRFQIDTRTVEGIDP-------------------SFHEGIIARYGLDSDVTRVEVC 285
+ +F+ +E P + E
Sbjct: 218 SYCYDKFKALYEEMEQGKPTIVLGTSYEMGTHFGTLDIDDVNEKLEDPTYSPLSFEREFR 277
Query: 286 GQFPQQDIDSFIPLNIIEEA---------LNREPCPDPYAPLIMGCDIAEEGGDNTV--- 333
F S + I +A +N E +P ++ D+A NT
Sbjct: 278 SVFTGSSEKSLVSAEEISKARVLEKPMWKINSEDKKNPNVRFVLSYDVARATTGNTANSS 337
Query: 334 -VVLR--------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
V+R + ++F + + V ++ + +D N G
Sbjct: 338 LAVIRIEDRGDGTYTKHLVNIFTMQGSHFENQAKFLKQKVNEFNATILCVDINGMGWGLV 397
Query: 385 DYL 387
DYL
Sbjct: 398 DYL 400
>gi|229142811|ref|ZP_04271259.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
BDRD-ST26]
gi|228640653|gb|EEK97036.1| Prophage LambdaBa02, terminase, large subunit [Bacillus cereus
BDRD-ST26]
Length = 194
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 13/150 (8%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
+L E ++ +E ++ P + + WQ +
Sbjct: 37 NDLKRQGTEEFPW---IFDEEKAHRPIRYIEKFCRP---SKGDYKRLVL-QPWQHFVIGS 89
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGISVICLANSETQ 119
+ +G I GR GKTT+ + L + + PG V LAN++ Q
Sbjct: 90 LYGWIHKDTG--YRRFREGLIFIGRKNGKTTMISGLSNYAVAKDNEPGARVYVLANTKQQ 147
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
L+ E + P ++
Sbjct: 148 AGE-LFDESRAMVQKSPFFGSIYVKIRKAF 176
>gi|216905967|ref|YP_002333563.1| gp2 [Bacillus phage TP21-L]
gi|215809694|gb|ACJ70528.1| gp2 [Bacillus phage TP21-L]
Length = 439
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/273 (11%), Positives = 70/273 (25%), Gaps = 31/273 (11%)
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132
+ + + GR GK+ + +L + IS + L + + +++ ++ + +
Sbjct: 25 EMRDCLRYVLKGGRASGKSYFIPFRIL-MDIMEYPISWLVLRKVQNTIVRSVFEQLKEAM 83
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+L KH F L +K Y C ER +
Sbjct: 84 VILGIKHLFRCIPSRLIMEYKP---------RGNKIYFLGCEE--PERIKSIKDAEFPIM 132
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF- 251
+ + + I + F+ +N P
Sbjct: 133 GMWVEEIGEFRKEEEISIIEKSVLRGEFEIKPEHRPELPNYEYTFFYSYNPPKRRAHWLN 192
Query: 252 ---------------QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + +F+E ++ R E G+
Sbjct: 193 KKYNSSFIPDNTHVNHSTYLDNDYLTKAFYEEAEIEKKMNPLKYRWEYLGEAIGSG---V 249
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+P + I A + + + G D
Sbjct: 250 VPFDNIVSAEITDEQISQFDNIRQGIDFGYATD 282
>gi|90961760|ref|YP_535676.1| terminase large subunit [Lactobacillus phage Sal1]
gi|90820954|gb|ABD99593.1| Terminase large subunit [Lactobacillus phage Sal1]
Length = 588
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/299 (13%), Positives = 84/299 (28%), Gaps = 24/299 (8%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
+ WQ + + +G + GR GKTTL + L ++ G +
Sbjct: 109 QPWQHFIVGSMFGWVHRDTG--LRRFREGVVFVGRKNGKTTLESGLADYMAGFDGERGAN 166
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD-----VLHCSLGI 164
V LAN++ Q + L+ E + P + + S P + +
Sbjct: 167 VYFLANAQVQARK-LYDESKAMIEHSPYLAKRFVTTRSEIRFPKTNSTIVPMSVEKKNKD 225
Query: 165 DSKHYSTMCRTYSEER-------PDTFVGHHNTYGMAIINDEASGTPDVINLGI---LGF 214
+ + E + G + I+ + I
Sbjct: 226 GENVHFAVFDEIHEYKDYFLISAMKQARGARLQPLIMYISTAGYVLDGPLMDFIDNGKEA 285
Query: 215 LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
L++ +A+ L+ + + W + + ++ ++ R
Sbjct: 286 LSDYDAHVDERTF---YYLASLDKVEESDDPELWIKANPNLCLMDTVNLISDYIKDKRTP 342
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNT 332
+ + F D SF+ + I + I G D++E
Sbjct: 343 AEYATWLTKQFNIFSSTDELSFVTIETINKNKRMIDEDTLLGRSCIGGYDLSETEDFTA 401
>gi|313898075|ref|ZP_07831614.1| putative phage terminase, large subunit [Clostridium sp. HGF2]
gi|312957103|gb|EFR38732.1| putative phage terminase, large subunit [Clostridium sp. HGF2]
Length = 533
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/403 (11%), Positives = 99/403 (24%), Gaps = 69/403 (17%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG---IS 109
WQ + + + + + + + +GK+ L A + L L++ G
Sbjct: 50 DWQEQIIRDIFGTLKPNGYR---QFNTAYVEIPKKMGKSELAATVAL-LLTCGDGEERAE 105
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V A Q T ++ + + + P + ++ L+ Y + ++ Y
Sbjct: 106 VYGCAADRQQA-TIVFDVAADMVRMCPALNR-RVKILASQKRIVYQPTNSFYQVLSAEAY 163
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
S F H + + G+ D + +T + I
Sbjct: 164 SKHGFNI---HGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTNSICYET 220
Query: 230 PRRLSGKFYE-----------IFNKPLDDWKRFQIDTRTVE------GIDPSFH--EGII 270
++ DDW ++ + GID E
Sbjct: 221 HQKAKDILEGRKIDPTFYPVIYGADETDDWTDPEVWKKANPSLGITVGIDKVEAACESAK 280
Query: 271 ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG- 329
G + R Q+ +Q + + + G D++
Sbjct: 281 QNPGE-ENAFRQLRLNQWVKQAVRWMPMEKWDACSFKVDEESLEGRVCYGGLDLSSTTDI 339
Query: 330 -----------------------------------DNTVVVLRRGPVIEHLFDWSKTDLR 354
D+ + + +
Sbjct: 340 TAFVLVFPPLDEDDKFCILPYFWIPEDTLDLRVRRDHVPYDVWERQGFLETTEGNVVHYG 399
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I L E++ I D + LE +G+ V
Sbjct: 400 YIEKFIERLGERFNIREIAFDRWGA-VQMVQNLEGMGFTVVPF 441
>gi|153814259|ref|ZP_01966927.1| hypothetical protein RUMTOR_00468 [Ruminococcus torques ATCC 27756]
gi|145848655|gb|EDK25573.1| hypothetical protein RUMTOR_00468 [Ruminococcus torques ATCC 27756]
Length = 515
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/345 (12%), Positives = 87/345 (25%), Gaps = 58/345 (16%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
M+ + NF+ + + P WQ E + + +
Sbjct: 1 MFDEAKADHAVNFINCLKHTKGRWRGVPFELLP--WQDEIIRTLYGTVKENGYRQYNT-- 56
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRP---GISVICLANSETQLKTTLWAEVSKWLSLL 135
+ GK+ L A + L+ M+ G V A+ Q + ++ +
Sbjct: 57 -CYCEIPKKNGKSELAAAIALY-MTCGDGEWGAEVYGCASDRQQA-SIVFDVAVDMVDQC 113
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P +S+ + Y + + H A+
Sbjct: 114 PALKKRIKPVMSVKRLVYKPTN----------------SFYQVLSAEAYT-KHGLNVHAV 156
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK---------- 243
I DE P ++ ++ G R F+++T+ + +E K
Sbjct: 157 IFDELHAQPNRELFDVMTKGSGDARTQPLFFLITTAGTDRNSVCFEQHQKALDIIEGRKI 216
Query: 244 ------------PLDDWKRFQIDTRTVEGID-PSFHEGI------IARYGLDSDVTRVEV 284
DDW + + + E + + +V R
Sbjct: 217 DPTFYPVIYGASDEDDWSSEDVWYKANPSLGYTIDIEKVQNAYISAKENAAEENVFRQLR 276
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
Q+ +Q + G D++
Sbjct: 277 LNQWVKQSTRWMQMDKWDACSFAVNEEELLGRECYGGLDLSSSTD 321
>gi|15895169|ref|NP_348518.1| Phage terminase-like protein, large subunit [Clostridium
acetobutylicum ATCC 824]
gi|15024874|gb|AAK79858.1|AE007697_11 Phage terminase-like protein, large subunit [Clostridium
acetobutylicum ATCC 824]
Length = 596
Score = 51.4 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/298 (11%), Positives = 69/298 (23%), Gaps = 18/298 (6%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--GIS 109
+ WQ + + + GR GKTTL + L + + G
Sbjct: 115 QPWQHFIIGSLYGWVHKDTGIRRFREGLIFV--GRKNGKTTLISGLSNYSVGFDYENGAR 172
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP--------WYSDVLHCS 161
V LAN+E Q L+ E + P S+ SD
Sbjct: 173 VYVLANAEQQAHE-LFDEAKAMVKTSPFLKKRYKPLRSIIRYEDKFSQIEARASDSKRLD 231
Query: 162 LGIDSKHYSTMCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE 217
+ + + G + I +
Sbjct: 232 GLNTHLGIFDEIHEFQDFKLINVIKKSRGARKQPLIIYITTAGYVLDGPLMQFYDDGKEC 291
Query: 218 RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
I ++ + +W + + ++ + + +
Sbjct: 292 LENIDDNIDERTFYYMAKLDSIEEAEEPRNWIKANPNIGLMDFVGLVSDWKKDRKSPQER 351
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVV 334
+ F S + + I + + G D++E + V
Sbjct: 352 ADWITKQFNIFADVTELSLVDIETINKNSKTIDIDTLKGLECTGGYDLSETEDFTSAV 409
>gi|317128805|ref|YP_004095087.1| terminase [Bacillus cellulosilyticus DSM 2522]
gi|315473753|gb|ADU30356.1| Terminase [Bacillus cellulosilyticus DSM 2522]
Length = 575
Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/341 (12%), Positives = 92/341 (26%), Gaps = 45/341 (13%)
Query: 19 MWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
+W E +F G++ PL+ + +Q + +
Sbjct: 46 IWDVEQANEILDFAETLTLAEGDEPAPLKLY----DFQCFMFGSWNGWL---TLEGHRRF 98
Query: 78 FKGAISAGRGIGKTTLNAWLVLWL--MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ R GK+ NA L+ +T + +A E Q K L E K+++
Sbjct: 99 RTSYVQLARQQGKSLGNAVPSLYYGNFTTYQYPQLYTVATKEQQAKIVL-KECYKFINAD 157
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP--DTFVGHHNTYGM 193
+++ + S++ K T RP + +H +
Sbjct: 158 KELSGTKVEKGLFTIKDYKSEIECNLTNGLIKALGRDTDTIDGFRPYFASVDEYH-KHKT 216
Query: 194 AIINDEASGTPDVINLGILGFLTERN-----------------------ANRFWIMTSNP 230
+ S + ++ +T ++ +
Sbjct: 217 NQMYKLLSDGTKKLKSCLVSVITTAGFELTSPCKDLYDYCVKILHGLVQDETQFVYITQL 276
Query: 231 RRLSGKFYEI-FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ F E + K W +++ + G + + +
Sbjct: 277 DKEDDPFDESVWPKCNKLWTEETLNSL------RANARKAKEMGGEELRNFLTKDLNVWY 330
Query: 290 QQDIDSFIPLN-IIEEALNREPCPDPYAPLIMGCDIAEEGG 329
Q D ++ L E +R + G D++ G
Sbjct: 331 QFTDDQYMNLEKWKECESDRTLEDMRGKTAVAGLDLSSGGD 371
>gi|295096346|emb|CBK85436.1| Terminase-like family [Enterobacter cloacae subsp. cloacae NCTC
9394]
Length = 435
Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 53/356 (14%), Positives = 97/356 (27%), Gaps = 41/356 (11%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + M P I+ A + Q++ + +
Sbjct: 23 AYVAGFGSGKTWVGCGGICKGMWEHPKINQGYFAPTYPQIRDIFYPTI------------ 70
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-- 198
E + + ++ + + Y S E+P + VG M D
Sbjct: 71 -EEVAFDWGLSVIINEGNKEVHFYEGRRYRGTTICRSMEKPGSIVGFKIGNAMVDELDVM 129
Query: 199 EASGTPDVINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRF 251
A+ I +T+ P + + + +
Sbjct: 130 AAAKAQQAWRKIIARMRYKVDGLRNGIDVTTTPEGFKFVYQQFVKAVREKPELSALYGLI 189
Query: 252 QIDTRTV-EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T + + P + +++ Y + + + + G+F + + I + N
Sbjct: 190 QASTFDNAKNLPPDYISSLLSSYPDE--LIQAYLRGKFTNLNSGT-IYHTFNRKLNNCSD 246
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY--- 367
PL +G D V V R G D +I +Y
Sbjct: 247 EIQDGDPLFIGMDFNVGKMAAIVHVKRNGLPRAVRELVKVYDTPAMIKRIQEEFWRYEDG 306
Query: 368 -----RPDAIIIDANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
R I DA+ ++ L G+ V D N
Sbjct: 307 RYVKSREIYIYPDASGDSRKSQNASKTDIAQLNDAGFSVIVDDANPPVKDRINSMN 362
>gi|317501194|ref|ZP_07959399.1| terminase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331090060|ref|ZP_08338949.1| hypothetical protein HMPREF1025_02532 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316897370|gb|EFV19436.1| terminase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330402522|gb|EGG82091.1| hypothetical protein HMPREF1025_02532 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 464
Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/361 (11%), Positives = 100/361 (27%), Gaps = 49/361 (13%)
Query: 39 GEKGTPLEGFSAPR--SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
G++ L + WQ + A + + + R GK+
Sbjct: 24 GQEAAELYAKTGNELLEWQQLLQCDIMAVNDDGLWMHQKYGYSV----PRRNGKSENVLA 79
Query: 97 LVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD 156
LW + + G ++ A+ +W + + + + + +
Sbjct: 80 RCLWGL--KNGERILYTAH-RATTSHAVWERLDRMCEK----------AGIKISSSFKAF 126
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
D RT S G +I DEA + + ++
Sbjct: 127 GKEHLYTSDGGVVEFRTRTSS--------GGLGEGYDVLIIDEAQEYTEAQETSLKYIVS 178
Query: 217 E-RNANRFWIMTSNPRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDPSFHE- 267
+ N + T +G + + + W + ++ T +++E
Sbjct: 179 DSENPQTIMLGTPPTAVSAGTVFTKYRETVLAGRGFDSGWAEWSVENLTPANDVEAWYET 238
Query: 268 -----------GIIARYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEEALNREPCPDPY 315
I A D ++ G + + + S I A+ +P
Sbjct: 239 NPSLGTILTERKIRAEITTDDIDFNIQRLGLWLKYNQKSAISKTEWESLAIASKPKLKGE 298
Query: 316 APLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
+ + + +V I + +R N+ I + + +P +++D
Sbjct: 299 LFVGVKYGHDGQHVAMSVASKTNEGKIF-VEALDCRTIREGNDWILSYIAEMKPKTVVVD 357
Query: 376 A 376
Sbjct: 358 G 358
>gi|70731126|ref|YP_260867.1| hypothetical protein PFL_3766 [Pseudomonas fluorescens Pf-5]
gi|68345425|gb|AAY93031.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
Length = 433
Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 51/375 (13%), Positives = 97/375 (25%), Gaps = 47/375 (12%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P F+ + AG G GKT + + P ++ A + Q++
Sbjct: 5 NIPQAQFLTLPHKFRAFV-AGFGSGKTWVGCSALSKHFMEWPCVNAGYFAPTYPQIRDIF 63
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + + + + H + S E+P T
Sbjct: 64 YPTMDEV-------------AYDWGLKTKINQANHEVHIYSGRQCRGTVICRSMEKPQTI 110
Query: 185 VGHHNTYGMAIINDEASGTP-DVINLGILGFLT--ERNANRFWIMTSNPRRLSGKFYEIF 241
VG + + D + I+ + +T+ P F +
Sbjct: 111 VGFKIGHALVDELDVLTSIKAQQAWRKIIARMRYNLPGLKNGVDVTTTPEGFKFVFQQFV 170
Query: 242 NKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ D + Q T E + + ++ Y + R + GQF
Sbjct: 171 KQLRDKPAFKEMYGLVQASTFDNELNLPDDYIPSLMESYPE--QLIRAYLNGQFVNLTSG 228
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR 354
S I + PL +G D + + D
Sbjct: 229 S-IYHAYDRKLNQCFDTVQAGEPLFIGMDFNVGKM--AAITHVKRDQGLPRAVDELIDGY 285
Query: 355 TTNNKISGLVEKYRPD-----------AIIIDANNTGARTC-------DYLEMLGYHVYR 396
T + I + E+Y I DA+ ++ L+ G+ V
Sbjct: 286 DTPDMIRRIKERYWQHDGNDFKKTCEIRIYPDASGDSRKSVNASMTDIAMLKQAGFSVIA 345
Query: 397 VLGQKRAVDLEFCRN 411
D N
Sbjct: 346 PAANPPVKDRINAMN 360
>gi|146277413|ref|YP_001167572.1| phage terminase [Rhodobacter sphaeroides ATCC 17025]
gi|145555654|gb|ABP70267.1| phage Terminase [Rhodobacter sphaeroides ATCC 17025]
Length = 535
Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/343 (11%), Positives = 92/343 (26%), Gaps = 26/343 (7%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGI 108
WQ + + V RG KT+L A L + + PG
Sbjct: 45 DPWQERIIRRIYGPRHPDGTRVVRRVVLLL---PRGNRKTSLCAALTILHLIGPEREPGG 101
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK- 167
++ A + Q + ++ + + ++ D K
Sbjct: 102 LIVSAAAAHEQAMELFNEAALIIQHDGRLRDLLSVREYVSRISFPKMGTRYVAVASDGKV 161
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + + G ++ P + + + + +
Sbjct: 162 QHGKTPNVVIADELHAWEGRAGLRQWEALDSALVKVPGTLMVVASTSGRGQENLAWQTVD 221
Query: 228 SNPRRLSGKFYE-------IFNKPLDDWKRFQIDTRTVEGIDPSFHE--------GIIAR 272
+ G+ + +P DDW ++ G+ + +
Sbjct: 222 YAIKVQKGEIDDPATLPVVFMAEPEDDWNDEEVWQAVNPGLAYGYPDIDGFRDKARKAVH 281
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE---ALNREPCPDPYAPLIMGCDIAEEGG 329
+ D ++ Q F+ + + +E A++ + AP +G D+++
Sbjct: 282 SPFERDSFLQFNLNRWLDQTTSPFVEMPVYDEGASAVDLDELDMVQAPCWLGVDLSKNED 341
Query: 330 DNTVVVLRR-GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
+V + G ++ W ++ Y A
Sbjct: 342 LTCIVAAWQDGDDGYQVYPWFFCPEDNLRSRGERHGVDYVAWA 384
>gi|291460129|ref|ZP_06599519.1| phage terminase, large subunit, PBSX family [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417470|gb|EFE91189.1| phage terminase, large subunit, PBSX family [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 408
Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 45/408 (11%), Positives = 112/408 (27%), Gaps = 47/408 (11%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119
+ + + + + RG K+ A +++ + P S +C+
Sbjct: 4 SLQEVVGKNYVDFWNTKKRYRVCKGSRGSKKSKTTALNMIYRLYRYPESSGLCVRRYANT 63
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
L+ ++++++ + L +F+ L + G+D
Sbjct: 64 LRDSVFSDLKWAIHRLQLDAYFDCLVSPLQIVRRSTGQKILFRGLDESLKI--------- 114
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW----IMTSNPRRLSG 235
+ I +EA + + + ++ + + S
Sbjct: 115 --TSISVERGCLCFVWI-EEAYEVAEDDFNKLDMSIRGEVPEGYFKQLTLTFNPWSATSW 171
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
F+ P D + E +D + + R+E G++
Sbjct: 172 LKARFFDAPDDTIFTKTTTWQCNEWLDDADRHIFEMMRRQNPRRYRIEGDGEW-GIAEGL 230
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT 355
P + +E+ E D + V L G + ++ + +
Sbjct: 231 IYPNHRMEDFDVGEIRAQEGVKAAFNLDFGFTDPNAFVCELVDG-QAKKIYIFDEWYQSG 289
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
N+I K + G G + + +++ R E
Sbjct: 290 VTNRIIAETIKEK---------GYG----------GQRIICDCAEPKSIAELQDEGIRAE 330
Query: 416 LHVKMADWLEFA-SLINHSGLIQNLKSLKSFI--------VPNTGELA 454
+K D ++ LI + +I + + + + G +
Sbjct: 331 ASLKGRDSVQHGIQLIQNYEIIVHPRCTEFYKEIENYCWEKDRNGRMT 378
>gi|149408208|ref|YP_001294642.1| hypothetical protein ORF049 [Pseudomonas phage PA11]
Length = 535
Score = 51.1 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 52/484 (10%), Positives = 125/484 (25%), Gaps = 77/484 (15%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E + + L + + K+ + A W+++ P ++++ ++
Sbjct: 50 REIFAWMQDYTLFGRGSDLTSNKLIMLPRAHL--KSHMVATWCAWIITRHPEVTILYISA 107
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQ-SLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T +T L+A + S + N+++ E W S+ + K
Sbjct: 108 TATLAETQLYAVKNILASSVYNRYFPEYIHPQEGKREKWSSNAMSIDHVQRKKEGIRDAT 167
Query: 175 TYSEERPDTFVGHHNTYGMA--IINDEASGTPDVINLG------------ILGFLTERNA 220
+ G H +A ++ E + T D GF
Sbjct: 168 IATAGLTTNTTGWHADIIVADDLVVPENAYTEDGRESVQKKSSQFTSIRNAGGFTMACGT 227
Query: 221 NRFWI-MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGL---- 275
+ + R ++ +D+ ++I VE + I G
Sbjct: 228 RYHPSDIYATWRSQKYDIFDDEGMKIDEHPVWEIKEYAVEKDNIFLWPRTIREDGKAFGF 287
Query: 276 -------------DSDVTRVEVCGQFPQQDID-------SFIPLNIIEEALNRE----PC 311
D + D + ++++ +R
Sbjct: 288 DIRVLARIKAEYSDRVQFFAQYYNDPNDPGSDRISRDKFQYYNPRLLKKEGSRWTYNGRR 347
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLRRGP----VIEHLFDWSKTDLRTTNNKISGLVEKY 367
+ YA + ++ + +VV+ + + + I L K+
Sbjct: 348 LNIYAAVDFAFSLSRQADYTAIVVIGIDCDNNIYVVDIDRFKSDKTLEYFQHIKALHSKW 407
Query: 368 RPDAIIIDAN----NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL---HVKM 420
+ + + DY++ G + + + L + +
Sbjct: 408 VFNKLQAEVTVAQKVIVNGIKDYVKKDGLRLSVEEYRPSRAEGSKEERIAAALEHRYDNL 467
Query: 421 ADWLEFASL------------INHSGLIQNLKS------LKSFIVPNTGELAIE--SKRV 460
W H + L S + + + + SKR
Sbjct: 468 EVWHHEGGWTSVLEEELVLSRPPHDDIKDALASAVSIATPPAKSFNSGIQDFLFDNSKRS 527
Query: 461 KGAK 464
+
Sbjct: 528 RFGG 531
>gi|192291432|ref|YP_001992037.1| phage terminase, large subunit, PBSX family [Rhodopseudomonas
palustris TIE-1]
gi|192285181|gb|ACF01562.1| phage terminase, large subunit, PBSX family [Rhodopseudomonas
palustris TIE-1]
Length = 421
Score = 51.1 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/338 (11%), Positives = 84/338 (24%), Gaps = 36/338 (10%)
Query: 84 AGRGIGKT----TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT ++A + ++C L + +AEV +
Sbjct: 7 GGRGSGKTRTFAKMSAVRGIDFAQAGMDGVIVCGREFMNSLADSSFAEVKAAI------- 59
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
S + + + + ++ + + + DE
Sbjct: 60 ----LSTPWLAERYDVGDTYIRTKCRRIIFVFVGLRHNLDSIKSKARIR-----LLWVDE 110
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF-YEIFNKPLDDWKRFQIDTRTV 258
A D + + E + + T NP R + P K +++ R
Sbjct: 111 AEPVSDEAWNITIPTVREEGSEIWL--TWNPDRKASATNKRFRENPPAGAKIVELNWRDN 168
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEALNREPCPDPY 315
+ + D G++ ++ + E+ DP
Sbjct: 169 PYFPEILNRTRLDDKANRPDQYGWVWEGEYRSVVAGAYYAKALTQAKEQGRITFVPLDPL 228
Query: 316 APLIMGCDIAEEGGDNTVVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
+ DI G + G I L + + +
Sbjct: 229 MQVRAYLDIGGAGAKADAAAIWIVQFVGQRINVLDYYEAQGQPLATHVAWMRERGWGKAL 288
Query: 372 IIIDANNTGARTC------DYLEMLGYHVYRVLGQKRA 403
+++ + L G+ V + Q
Sbjct: 289 VVLPHDGAQTDKVHATSYESALREAGFDVIVIPNQGAG 326
>gi|261342719|ref|ZP_05970577.1| putative phage terminase, large subunit [Enterobacter cancerogenus
ATCC 35316]
gi|288315373|gb|EFC54311.1| putative phage terminase, large subunit [Enterobacter cancerogenus
ATCC 35316]
Length = 553
Score = 51.1 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/450 (10%), Positives = 92/450 (20%), Gaps = 70/450 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
F F P WQ + + + +
Sbjct: 41 DTATVERFIAFSRLCPHVKGPLRGQPIELEP--WQQFAFANLLG--FKNSESGRRKYSSA 96
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL-------- 132
I R K+T+ A L W + G I A ++ + +
Sbjct: 97 FIEVPRKNAKSTVAAMLANWFLVMEKGQQDIYTAAVSRDQARIVFDDARQMCLLSKPLKK 156
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHH 188
+ H + P + S + + + +G
Sbjct: 157 RVNIQAHKVIFPKSNSLLKPLAAKAATIEGTNPSLAIVDEYHLHPDNGVYSALELGMGAR 216
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ I S + + I+ S +
Sbjct: 217 PEAILFAITTAGSNV--------VSACKQHYDYCCQILAGEESNDSLFVLIYELDDESEV 268
Query: 249 KRFQIDTRTVEG----IDPSFHE-GIIARYGLDSDVTR--VEVCGQFPQQDIDSFIPLNI 301
++ ++ + +D + E I G+ S + + Q
Sbjct: 269 EQPEMWIKANPNLHVSVDAAKLESTIQKARGIPSQWVEMLTKRFNIWCQGSTPWMGAGAW 328
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTV---------------------------- 333
AL+ G D++ +V
Sbjct: 329 DACALDYTEEDLAGMECYAGFDLSSTSDITSVSYAFPFDREIRLLTRHYLPEAQLLNVAN 388
Query: 334 ---VVLRRGPVIEHLFDWSK--TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ R+ + D + I E + + D N L+
Sbjct: 389 KNRAIYRQWVKAGWIRTTPGDCIDYDRIRDDILRDAETFNIRLVGFDTWNA-THLRTQLQ 447
Query: 389 MLGYHVYRV-----LGQKRAVDLEFCRNRR 413
G V A E NRR
Sbjct: 448 GAGLDVEPFPQTYLKFSPVAKSFEVFVNRR 477
>gi|302381364|ref|YP_003817187.1| hypothetical protein Bresu_0249 [Brevundimonas subvibrioides ATCC
15264]
gi|302191992|gb|ADK99563.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC
15264]
Length = 556
Score = 51.1 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 59/426 (13%), Positives = 111/426 (26%), Gaps = 55/426 (12%)
Query: 84 AGRGIGKTTLNA-WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GKT A WL + G + + S ++ + VS +L
Sbjct: 157 GGRGAGKTLAGAVWLSDQAEALGAGGRLALIGGSLHDVREVMVEGVSGIAALARWNDPKW 216
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + + A DE
Sbjct: 217 GGVRPVFEP------------SRKRLVFPNGAVAQAFSAEDPEALRGPQFAAAWADEFCA 264
Query: 203 TPDVINL---------GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
P +L ++T+ P + G ++ +P +
Sbjct: 265 WPRGGRGGRGGPGATLALLRMGLRLGERPRLVVTTTP-KPIGALRDLRAEP-GLVQTHAA 322
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ + F EG+ YG + E+ G+ + S ++ A R
Sbjct: 323 TRDNADHLAAGFVEGLERLYG-GTRKAAQELEGR-VVEQEGSLFTAEMMGRA--RGVLEG 378
Query: 314 PYAPLIMGCDIAEEGGDNT---VVVLRRGPVIEHL--FDWSKTDLRTTNNKISGLVEKYR 368
+ +++ D G N VV R G L + + E++
Sbjct: 379 SFDRIVVAIDPTTTAGGNACGIVVAGRVGDRAHVLADRSVAGLGPDGWARRAVRAAEEFG 438
Query: 369 PDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
A++++ N G L+ G V + R E + +
Sbjct: 439 AVALVVEVNQGGEMVRAVLKTAGCSVRIREVRATKGKR-----IRAEPVAALYEQGRVTH 493
Query: 429 LINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L + L ++ G D +D L++ + D G
Sbjct: 494 ARGLGALEEELMAI---GGDEAGWDL------------DRADALVWALTD--LLIDRSGG 536
Query: 489 RCPSYQ 494
P +
Sbjct: 537 EGPRIR 542
>gi|149196474|ref|ZP_01873529.1| hypothetical protein LNTAR_14992 [Lentisphaera araneosa HTCC2155]
gi|149140735|gb|EDM29133.1| hypothetical protein LNTAR_14992 [Lentisphaera araneosa HTCC2155]
Length = 609
Score = 51.1 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 47/340 (13%), Positives = 84/340 (24%), Gaps = 50/340 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R +GKT + LV R + + +A Q +K + L ++
Sbjct: 87 CRQVGKTESLSSLVCLKARVRDNYNSLVVAPRHEQATRI---SAAKTIPFLKESLAAKLP 143
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ +L +K Y C + + DE
Sbjct: 144 KFYVDSLR-DVHKQEITLKNQNKIYFIGCYL-------SPDAARGLSTECVYYDEYQDIN 195
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
+ P+ SG E F + + + E
Sbjct: 196 PEHTPVVNACKDGSMLYGEEYYFGTPKSTSGPLTEKFMEGSQGYWCVSCPSCDKEVWAND 255
Query: 265 FH--------EGIIARYGL-----------DSDVTRVEVCGQFPQQDIDSFI-PLNIIEE 304
E II G + + + + P++ I ++ +
Sbjct: 256 DIDDAGSYACERIIGIEGPTCIYCEYVFTFEEVLYKGYYKHRHPERLKKQIIEGREVLGK 315
Query: 305 ALNREPCPDPYAPLIMGCDIAE-------------EGGDNTVVVLRRGPVIE---HLFDW 348
A A ++ A+ + + RG V+ L D
Sbjct: 316 ASYHICQSFHPAHMVSKAKWADLYNKANGSMDRVTFLNECMGIAADRGNVLITPQELADC 375
Query: 349 SKTDLRTTNNKISGLVE---KYRPDAIIIDANNTGARTCD 385
D N+ S L K I ID + G + D
Sbjct: 376 CSEDATHINSLQSALTRSRVKNSRVYIAIDWSGFGGQASD 415
>gi|49823279|gb|AAT68704.1| hypothetical protein [Borrelia hermsii]
Length = 397
Score = 51.1 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 18/217 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
+ RGIG+T A + L T G + + + + ++ E+ + L + F +
Sbjct: 26 SSRGIGQTYDIATVYLERKFTPGGGDTLAVRKKKNKTVQSIHKEILELLHRYNLRREFTV 85
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + E DT + + +EA+
Sbjct: 86 SKAKIETKNLIYGRKRAFVF--------------EGGHDTTDLKSYAHFKDLWLEEANQF 131
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID- 262
+ ++ + ER + PR I N+ + R ++
Sbjct: 132 TESDIERLIPTMRERGGRIYMSSNPVPRSHWLYKRYIANEDNPAVCVIKSTYRDNPFLNG 191
Query: 263 ---PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
S+ E Y + R+EV G+
Sbjct: 192 GDVDSWLEKQRLAYHGNDIGFRIEVLGEEFDFGTAKV 228
>gi|328543298|ref|YP_004303407.1| Large terminase subunit [polymorphum gilvum SL003B-26A1]
gi|326413044|gb|ADZ70107.1| Large terminase subunit [Polymorphum gilvum SL003B-26A1]
Length = 470
Score = 51.1 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 68/233 (29%), Gaps = 22/233 (9%)
Query: 248 WKRFQIDTRTVEG--IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII--- 302
WK Q E + + + + D + E Q P D +F+ ++I
Sbjct: 207 WKLQQSLPEDDERQEMTEADYYDWVKAGCADEESFLQEYMCQ-PADDDAAFLEYDLIAAC 265
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
E + L G DI + + V+ + + + T + +
Sbjct: 266 EYPGDSPWRTMEGGRLFAGIDIGRKRDLTVLWVVEQLGDVFYTRHIEALQAMTKSEQEKI 325
Query: 363 LVE-KYRPDAIIIDANNTGARTCDYLEMLG--YHVYRVLGQKRAVDLEFCRNRRTELHVK 419
L R + + ID+ G D + Y V V +
Sbjct: 326 LWPWLARCERVAIDSTGLGIGWADDAQDKFGKYRVEAVNFSGAIKEALAYP--------- 376
Query: 420 MADWLEFASL--INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD 470
+ +E L + +L+S+ + V G + ++R D
Sbjct: 377 VRGRMEDRRLRIPYDPTIRADLRSV-TKQVTAAGNIRFTAERTPDG-HADRFW 427
>gi|171742594|ref|ZP_02918401.1| hypothetical protein BIFDEN_01707 [Bifidobacterium dentium ATCC
27678]
gi|283456320|ref|YP_003360884.1| phage terminase [Bifidobacterium dentium Bd1]
gi|171278208|gb|EDT45869.1| hypothetical protein BIFDEN_01707 [Bifidobacterium dentium ATCC
27678]
gi|283102954|gb|ADB10060.1| Phage terminase [Bifidobacterium dentium Bd1]
Length = 463
Score = 51.1 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/340 (10%), Positives = 81/340 (23%), Gaps = 33/340 (9%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ ++ + R GK L L+ + + G ++
Sbjct: 12 DPWQRIVLK---DWLATDTQGHLLATDAV-VVLPRQNGKNGLVEEAELYKAAVQ-GRRIL 66
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ + + N + E+++L + S +
Sbjct: 67 HTAHEVKTAR----RHFLRMQEYFDNADYPELKALVRYIRQTNGQEAIVLKNGGSIEFIA 122
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER--NANRFWIMTSN 229
+ + G DEA D + ++ + M +
Sbjct: 123 RSK-------SSGRGFTCDDLTL---DEAQELTDEQLEALRPVISAAPSGDPQTLFMGTP 172
Query: 230 PRRLSG-----KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
S + Y+ + + ++ DP + +
Sbjct: 173 TPPTSPGTVLVRMYKAAHSDAPPARLAWLEWAVDAVGDPLDRRRWRRVN----PALGIRL 228
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEH 344
+ + + SF P + A R D + I + +T G
Sbjct: 229 KEEVIEAEAASFSPES---FARERLGWWDVHTDSDSDYPITDWAECSTNTPPSDGYAAYA 285
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+ + + E P ++D + A
Sbjct: 286 VKFGFDGSHVSLAACLRPEAEGTPPHVELVDYRSMKAGVG 325
>gi|269963883|ref|ZP_06178195.1| hypothetical protein VME_45790 [Vibrio harveyi 1DA3]
gi|269831370|gb|EEZ85517.1| hypothetical protein VME_45790 [Vibrio harveyi 1DA3]
Length = 581
Score = 51.1 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 44/401 (10%), Positives = 107/401 (26%), Gaps = 45/401 (11%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNS 69
++E + + + + F +F F + F P W++ + +
Sbjct: 51 KSESEDYPYYFDEAEAQRFIDFCNKFLFHIKGELAGSPFLLP-PWEIFLLGSIFGWRKKR 109
Query: 70 VNNPNPEVFKGAISA----GRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTT 123
+++ + + + +A R GK+ + + +++W + G + A + Q +
Sbjct: 110 LSSYSKKKLRRFKTAECWVARKNGKSFIASAVMIWCLLFDSENGSEIYSAATTRDQAR-I 168
Query: 124 LWAEVSKWLSLLP-------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ + L P NK+ E+ +D +
Sbjct: 169 TADDAMRILRGSPLAQLCKINKYHVEVPETHGVLRALSADGGSLDGLNVHLGVLDELHAH 228
Query: 177 SEERP----DTFVGHHNTYGMAIINDEA---SGTPDVINLGILGFLTE--RNANRFWIMT 227
+ T G + +I+ G +T + F ++
Sbjct: 229 KQRDVYDVITTATGAREQPIIFVISTAGTILQGIGRERWSYSEKVITGLVEDDTHFAVLY 288
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV---TRVEV 284
S + D W + + + + + G +
Sbjct: 289 SIDKGDKY-------DDPDVWIKANPCLGISKKF--EDMQRLSVQAGETPAARANYLTKH 339
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDP--YAPLIMGCDIAEEGGDNTVVVL-----R 337
F + +EE N + +G D++ + D T + L
Sbjct: 340 LNVFVSSAEAWL-NIAEVEECENPNLNIEDYIGKKCFIGLDLSSKH-DLTAMSLIFPESD 397
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
G I + L I + + + +
Sbjct: 398 GGITIFQRHYLPEETLNKVPVHIREYYKNWSESGFLTLQDG 438
>gi|254707699|ref|ZP_05169527.1| Phage DNA packaging protein [Brucella pinnipedialis M163/99/10]
Length = 321
Score = 51.1 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/319 (13%), Positives = 83/319 (26%), Gaps = 41/319 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPG------ISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + P + + + + + S LS+
Sbjct: 27 IMGGRGSGKTRAGAEWVSGMALGLPPFAGKPSGHIALVGETFNDAREVMVDGPSGILSVS 86
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
V + + + A
Sbjct: 87 RL-------------------VRPRYEASRRRLIWDNGAVATLFSSEDPDSLRGPQFDAA 127
Query: 196 INDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + P + L + R + T+ + +
Sbjct: 128 WCDELAKWKNPQETWDMLQFGLRLGDNPRQVVTTTP---RAVPLLKALLTDRTVSMTHMR 184
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ F + I RY + + R E+ G+ ++ + + IE+ P
Sbjct: 185 TAENAGNLAEGFMQTIARRYA-GTRLGRQELDGELVEERPGALWSRDRIEQCFEEN--PP 241
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVLR-----RGPVIEHLFDWSKTDLRTTNNKISGLVE 365
P A +++ D + + D +V+ + + + L
Sbjct: 242 PLARIVVAVDPPASSGKASDACGIVVAGIDAEGVGHVLADESMTMAKPHQWARRAIALYH 301
Query: 366 KYRPDAIIIDANNTGARTC 384
+ DAI+ + N G
Sbjct: 302 THEADAIVAEVNQGGEMVA 320
>gi|260654759|ref|ZP_05860247.1| putative phage terminase, large subunit [Jonquetella anthropi E3_33
E1]
gi|260630474|gb|EEX48668.1| putative phage terminase, large subunit [Jonquetella anthropi E3_33
E1]
Length = 514
Score = 51.1 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/344 (10%), Positives = 86/344 (25%), Gaps = 56/344 (16%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
M + + F+ + P WQ F+ + + +
Sbjct: 1 MMDEYLASRAVKFIRALKHTKGEWAGSPFLLQP--WQEVFLRELFGRVDRNG---LRQYR 55
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ R GK+ L A + L+++ PG + A+ Q A + +
Sbjct: 56 TCYVEVPRKNGKSELAAAIALYMLFGDGEPGAEIYSAASERNQAALVFNAAAAMVRASPS 115
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ + ++ + ++ D+ H +I
Sbjct: 116 LTKRCRIIDSQKRIVYYKNNSFYQAISADA------------------DTKHGFNAHCVI 157
Query: 197 NDEASGTPDVI-NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL---------- 245
DE P+ + + R +T+ + +E+ +
Sbjct: 158 YDELHTAPNRNLWDTLATSMGARRQPLMLAITTAGWDRTSICWELHDYAQKIRQGMLQDS 217
Query: 246 ------------DDWKRFQIDTRTVEG----IDPSFHEGIIA---RYGLDSDVTRVEVCG 286
DDW + + + +F + + R
Sbjct: 218 TFLPVIYGAEENDDWGSEKTWKKANPNLGVSVKLNFLQTEYKKALEIPAFENSFRRLYLD 277
Query: 287 QFPQQDIDSFIPLNIIEE-ALNREPCPDPYAPLIMGCDIAEEGG 329
Q+ Q+ + A + P +G D++
Sbjct: 278 QWTSQETRWLAMTDWDACDAGPADLDELENEPCYVGVDLSSTTD 321
>gi|163850863|ref|YP_001638906.1| hypothetical protein Mext_1434 [Methylobacterium extorquens PA1]
gi|163662468|gb|ABY29835.1| protein of unknown function DUF264 [Methylobacterium extorquens
PA1]
Length = 458
Score = 51.1 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 48/355 (13%), Positives = 90/355 (25%), Gaps = 38/355 (10%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLWLM----STRPGI--S 109
+E H P P + A+ GRG GKT A V L P
Sbjct: 47 RLLEADWLHLARHDQLPPPGNWTTWAVIGGRGSGKTRTGAEWVRGLAHGDPVFTPEPVER 106
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + + ++ + L P +
Sbjct: 107 IALVGETFADVRDVM-----------------IEGPSGLLALPRLGGAPPVWQPSRRRVV 149
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV---INLGILGFLTERNANRFWIM 226
+ A+ +DE + + ++ G +
Sbjct: 150 FGNGAVALAFSAEEPDSLRGPQFGAVWSDEVAKWREAEATYDMIQFGLRLGTHPRGLVTT 209
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
T P L + + + + + PSF E ++ RY + + R E+ G
Sbjct: 210 TPRPVPLIRRLLADPRTVVTRSRT----ADNAQNLAPSFLEEVVGRYA-GTRLRRQELDG 264
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI-AEEGGDNTVV-----VLRRGP 340
+ + D+ + IE A E P + + + G D +
Sbjct: 265 ELIEDRPDALWTRDAIERARVSEAPPLQRIAVAIDPPASSRVGADACGIVAAGLAADGTA 324
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+ + L + DA++ + N G L V
Sbjct: 325 YVLADATLEQAAPAVWARAALALYHRLAADALVAEVNQGGEMVVAVLAEADPSVP 379
>gi|328477377|gb|EGF47512.1| phage terminase [Lactobacillus rhamnosus MTCC 5462]
Length = 465
Score = 51.1 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 55/348 (15%), Positives = 92/348 (26%), Gaps = 51/348 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+ WQ+E H + K S R GK + A L+ + G V+
Sbjct: 40 QPWQVEL----AKHIFAVNQDHLWTHTKFGYSLPRRNGKNEVVAIRELYAL--FDGEQVL 93
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ T + W LL + SL L
Sbjct: 94 HTAHRTTTSHSA-------WERLLRILDKSNVDYDSLKA----VGRERIELPDTGGRVEF 142
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER-NANRFWIMTSNP 230
RT + + F +I DEA + +++ N + T
Sbjct: 143 RTRTSTGGLGEGFD--------LLIIDEAQEYTTDQESALKYVVSDSKNPQTIFCGTPPT 194
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG-------------------IIA 271
SG + + + K D S I
Sbjct: 195 PLSSGTVFVNLRNNVLEHKVANAGWAEWGVEDESDVHDRELWYRCNPSLGTIMTERSIQD 254
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D ++ G + + + S I N + R P + I N
Sbjct: 255 EVGDDKIDFNIQRLGLWIKYNQKSAISANEWAQLKVRSL---PVLRGQLFVGIKYGNDGN 311
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
V V +R + +R + I G +++ A++ID
Sbjct: 312 NVSMSVAVRTLSKKVFVETIDCRSVRDGDQWIIGFLKQADVAAVVIDG 359
>gi|323484098|ref|ZP_08089468.1| hypothetical protein HMPREF9474_01218 [Clostridium symbiosum
WAL-14163]
gi|323402540|gb|EGA94868.1| hypothetical protein HMPREF9474_01218 [Clostridium symbiosum
WAL-14163]
Length = 516
Score = 50.7 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/298 (10%), Positives = 74/298 (24%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP---GIS 109
W+ + V + + + GK+ L A + L+ M+ G
Sbjct: 33 PWRDRIIRDVFGTVKENGYRQYNTA---YVEIPKKNGKSELAAGVALY-MTCGDGEWGAE 88
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V A+ Q + ++ + P +S+ + + ++ Y
Sbjct: 89 VYGCASDRQQA-SIVFDVAVDMVDQCPALKKRIKPVMSVKRLVYKP-TNSFYQVLSAEAY 146
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ F H + + G+ D + +T +R +
Sbjct: 147 TKHGL---NVHAVIFDELHAQPNRELFDVMTKGSGDARTQPLFFLITTAGTDRHSVCFEQ 203
Query: 230 PRRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVEGI-DPSFHEGII------A 271
++ P +DW + + + E +
Sbjct: 204 HQKAEDIILGRKIDPTFYPVIYGAGDEEDWSSEAVWYQANPSLGHTIDIEKVRNAYLSAR 263
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ ++ R Q+ +Q A + G D++
Sbjct: 264 DNPAEENIFRQLRLNQWVKQSTRWMQMEKWDNCAFPVDERELIGRECYGGLDLSSSID 321
>gi|218133440|ref|ZP_03462244.1| hypothetical protein BACPEC_01305 [Bacteroides pectinophilus ATCC
43243]
gi|217990815|gb|EEC56821.1| hypothetical protein BACPEC_01305 [Bacteroides pectinophilus ATCC
43243]
Length = 515
Score = 50.7 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 79/311 (25%), Gaps = 56/311 (18%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP---GIS 109
WQ E + + + + GK+ L A + L+ M+ G
Sbjct: 33 PWQDEIIRTLYGTVKENGYRQYNT---CYCEIPKKNGKSELAAAIALY-MTCGDGEWGAE 88
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V A+ Q + ++ + P +S+ +
Sbjct: 89 VYGCASDRQQA-SIVFDVAVDMVDQCPALKKRIKPVMSVKRLVYKPTN------------ 135
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMT 227
Y + + H A+I DE P ++ ++ G R F+++T
Sbjct: 136 ----SFYQVLSAEAYT-KHGLNVHAVIFDELHAQPNRELFDVMTKGSGDARTQPLFFLIT 190
Query: 228 SNPRRLSGKFYEIFNK----------------------PLDDWKRFQIDTRTVEGID-PS 264
+ + +E K DDW + + +
Sbjct: 191 TAGTDRNSVCFEQHQKALDIIEGRKIDPTFYPVIYGASDEDDWSSEDVWYKANPSLGYTI 250
Query: 265 FHEGI------IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
E + + +V R Q+ +Q + +
Sbjct: 251 DIEKVQNAYISAKENAAEENVFRQLRLNQWVKQSTRWMQMDKWDACSFAVKEEELLGREC 310
Query: 319 IMGCDIAEEGG 329
G D++
Sbjct: 311 YGGLDLSSSTD 321
>gi|9632897|ref|NP_049926.1| putative terminase large subunit [Streptococcus phage Sfi19]
gi|5524003|gb|AAD44056.1|AF115102_4 orf623 gp [Streptococcus phage Sfi19]
Length = 623
Score = 50.7 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 54/404 (13%), Positives = 106/404 (26%), Gaps = 68/404 (16%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFK 79
+ + F P + G P + +WQ + ++ + +
Sbjct: 72 YDTDEAARLLRFAR-ICPNVDTGEP----TKLMAWQKFILCMLFGWRNANGGK---RFSR 123
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLL 135
+S GRG GKT L A L + + + + Q L + + +
Sbjct: 124 AIVSVGRGQGKTYLMAILTAYSYFIESLGLSNQDYLVTSINFKQT-NKLLGYIKSMMKQI 182
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
F+ + + L D ++ + +
Sbjct: 183 IQNEPFKSLA----------NETELGLHSDQVIMKANNNVLRAISAESGQYD-SFHFTTA 231
Query: 196 INDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN---------KP 244
I DE D ++ + G + N I T+ P S F E
Sbjct: 232 IFDEIGEIETRDAVSKIVSGQVKVPNRQFIQISTAYP-NPSVPFREDQRIMQQAMEDDDS 290
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYG------------------LDSDV------- 279
D + + E DSD+
Sbjct: 291 RDADTYLCLVWSQDNLEEVFKPETWAKSNPLLDLEQERENLMKGLMDKRDSDLLSGNIAD 350
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR-- 337
+V+ + D +SF+ L IE A+ E + +G D + + + +
Sbjct: 351 FQVKNMNCWLLADSNSFLDLKDIENAVIPEFD-RRGKRVYVGLDASMFSDNTAIGFVYPY 409
Query: 338 ---RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
G H+ S + +E+ + ++A
Sbjct: 410 LGEDGSQKWHVEQHSFIPW-QQAGSLEAKMEQDGVNYRDLEAKG 452
>gi|114331461|ref|YP_747683.1| phage terminase [Nitrosomonas eutropha C91]
gi|114308475|gb|ABI59718.1| phage Terminase [Nitrosomonas eutropha C91]
Length = 557
Score = 50.7 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/298 (11%), Positives = 63/298 (21%), Gaps = 27/298 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + + +S G+G GK+ L A + L+ + C
Sbjct: 72 DWQAFIVGSLFGW---VDVEGLRRFRVAYVSTGKGSGKSPLAAAVGLYGLVADGEARAEC 128
Query: 113 --LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A + Q V+ + W
Sbjct: 129 YSAATKKDQAMILFRDAVAMVDQSAILRDAL--IKSGKGSTVWNLAYHKSGSFFRPISSD 186
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL----------GFLTERNA 220
H ++ +GT I G + +
Sbjct: 187 DGQSGPRPHIA-LIDEIHEHKNNFVVEMMRAGTKSRRQALIFMITNSGSDKTGPCWDYHT 245
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDD-------WKRFQIDTRTVEGIDPSFHEGIIARY 273
+ + S Y DD W + R E +
Sbjct: 246 YGTQVASGQLTDDSFFSYICALDEGDDPINDESCWDKANPSLRFGLPGYRYIREQVREAK 305
Query: 274 GLDSDVTRVEVCGQFPQQDIDS-FIPLN-IIEEALNREPCPDPYAPLIMGCDIAEEGG 329
G+ S V D+ +I + ++ + + G D+
Sbjct: 306 GMPSKEAVVRRLNFCEWTGADAPWISADVWMDARRDYDWRNLRSRRAWGGLDLGSTTD 363
>gi|327409392|ref|YP_004301534.1| gp2 [Brochothrix phage BL3]
gi|296245468|gb|ADH03081.1| gp2 [Brochothrix phage BL3]
Length = 524
Score = 50.7 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/281 (13%), Positives = 70/281 (24%), Gaps = 26/281 (9%)
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
+ GRG K+T A +++ LM A ++ TL V + L
Sbjct: 27 RYLRYVEKGGRGSAKSTHIAMILILLM-----KKYAISALVVRKVGNTLSESVVEQLKEA 81
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY-SEERPDTFVGHHNTYGMA 194
+ E W+ + S R + + +
Sbjct: 82 VDILGME--------DEWHFSKSPLKATYKPRGNSIYFRGADDPGKIKSIKIAKFPLTIL 133
Query: 195 IINDEASGTPDVINLGIL-----GFLTERNANRFWIMTSNPRRLSGKF---YEIFNKPLD 246
I + A + I L + F+ + P+R YE
Sbjct: 134 WIEELAEFKLEEEIGVIEKSVLRAKLPPGLSYYFFNSYNPPKRKQSWVNKKYETKVALAP 193
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
+ + + I F E Y + E G+ + +P N +
Sbjct: 194 NTRVHHTTYKDNPHISDEFIEEAEHMYQTNPQKAAWEYGGEPI---GNGVVPFNNLVFRT 250
Query: 307 NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
++ + G D D V +
Sbjct: 251 ITNDEFKSFSNIRQGLDFG-YATDPVAGVQWHYDKTRRIAY 290
>gi|331028117|ref|YP_004421831.1| phage terminase large subunit [Roseobacter phage RDJL Phi 1]
gi|301341580|gb|ADK73464.1| phage terminase large subunit [Roseobacter phage RDJL Phi 1]
Length = 452
Score = 50.7 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/343 (10%), Positives = 83/343 (24%), Gaps = 23/343 (6%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG K+ A +++ R +++ +L V K L
Sbjct: 24 GGRGGAKSHSFAEVLVDKGYERGRGDGTFRWLFAREIQGSLKDSVKKLLEDKIRSQGLGP 83
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ + ++ ++ + + + G +EA+
Sbjct: 84 KEEGGNGFYRITERTITGGDGRTEFLFA-GLRTNPDSVKSMEGLDG-----AWVEEANKV 137
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + + + +W + + P ++
Sbjct: 138 SQRSIDLLTPTVRKPGSELWWSFNRGSVKDPVDNRFLGGTPPPRSLIRKVGWEDNPWFPQ 197
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
+E ++ D D G +E + + MG D
Sbjct: 198 DLYEEMMWDKARDHDKWLHVWEGHPVTMSESRVFQNWTVE---DIDDQVPEGCIPRMGAD 254
Query: 324 IAEEGGDNTVVVLRRGP------VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
D +V+VL E + D + L E+ +
Sbjct: 255 WG-FANDPSVLVLVYIFGRTMYIRAERWKLKLEVDDTPAFWAGTDLREENPRWSNRHGFP 313
Query: 378 NTGARTCDYLEMLG-------YHVYRVLGQKRAVDLEFCRNRR 413
G + +G +V+ ++ N+R
Sbjct: 314 GMGNPLEEATPGIGHNGGPPLLPTNQVIADSARPEIISYMNKR 356
>gi|33770510|ref|NP_892047.1| terminase large subunit [Yersinia phage PY54]
gi|33636093|emb|CAD91762.1| terminase large subunit [Yersinia phage PY54]
Length = 577
Score = 50.7 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/299 (13%), Positives = 80/299 (26%), Gaps = 32/299 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
WQL + + I GR GK+ A + +++
Sbjct: 82 EPWQLFIFSSIFGWVTKKGKK--RRFKETYIRVGRKNGKSFFAAGIGMYMFCADGENAAE 139
Query: 110 VICLANSETQLKTTLWA--EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
V C A Q K +++K L L ++ + + L D
Sbjct: 140 VYCGATKMAQAKKVFTPASQMAKLLPDLRSRFNVSVWAEKLTREDGSVFAPVVGNPGDGD 199
Query: 168 HYSTMCRTYSEERP--------DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
S E P T +G + II +
Sbjct: 200 SPSCAIIDEYHEHPTDILYSTMTTGMGARSQPLTLIITTAGKDIESPCYD------KDNE 253
Query: 220 ANRFWIMTSNPRRLSGKFYEIFNKPLDDW-KRFQIDTRTVEGIDPSFHEGIIAR------ 272
+ RL G YE+ LD+W + F+E ++ +
Sbjct: 254 VKQCLDKMLPNERLFGMIYEL--DALDNWQDPCNLIKANPNLGVSVFYEDLVEKLHLAKT 311
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMGCDIAEEGG 329
++ + + + +F ++ +A ++ +G D+A +
Sbjct: 312 VPRMTNDIKTKHLNMWVSGK-TAFFNMDHWAKAEDKNLKLSNFKGEESHLGLDLAAKLD 369
>gi|87200729|ref|YP_497986.1| Phage uncharacterized protein-like [Novosphingobium aromaticivorans
DSM 12444]
gi|87136410|gb|ABD27152.1| Phage uncharacterized protein-like protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 458
Score = 50.7 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 52/438 (11%), Positives = 100/438 (22%), Gaps = 68/438 (15%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
G GKT L+ G + A L L + +L
Sbjct: 51 GGSRSGKTFGFCELI--------GGRAL-SAPGSRHLIARLHNIDVRQSVMLDTWPKMMG 101
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
+ P + L S+ + + + I +E+S
Sbjct: 102 LAFPDVPYEVNKSDQYAKLPDGSEVWFGG-----LDDKERVDKILGKEYATIYVNESSQV 156
Query: 204 PDVINLGILGFLTERNANRFWIMTS-------NPRRLSGKFYEIFNKPLDDWKRF----- 251
L + L + R NP Y F + +
Sbjct: 157 AYETVLTLRTRLAQACFRRDGSRLPLKGLYDLNPTGRGHWTYREFVEQVRPENGMPIEHG 216
Query: 252 -QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV-CGQFPQQDIDSFIPLNIIEEALN-- 307
+ +P A D R G++ + + + A +
Sbjct: 217 SRAWVAMNPVDNPHLPPEYHAELDGLPDKQRQRFRDGKYLSEVPGALWSASD-RTADDGT 275
Query: 308 --------REPCPDPYAPLIMGCDIAEEG----GDNTVVVLR---RGPVIEHLFDWSKTD 352
R P +++G D + +V + G +
Sbjct: 276 LMPGIDTLRRHAHPPLRRVVIGVDPSGSDGTGGDCQGIVAVGLGEDGHGYVLADKSCRLS 335
Query: 353 LRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNR 412
++ L K D I+ + N GA L + + +
Sbjct: 336 PEGWARVVADLARKVGADRIVAERNFGGAMVEAILRSADTRLPIRMVTASRGKVA----- 390
Query: 413 RTELHVKMADW--LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSD 470
R E + + + L + L + G S D D
Sbjct: 391 RAEPVAALYERGHVHHVGQFP--ELEEQLTMTTTSGFQ-------------GGGSPDRLD 435
Query: 471 GLMYTFAENPPRSDMDFG 488
L++ ++ +
Sbjct: 436 ALVWALSDLMLSGAGSYN 453
>gi|294010834|ref|YP_003544294.1| hypothetical protein SJA_C1-08480 [Sphingobium japonicum UT26S]
gi|292674164|dbj|BAI95682.1| phage-related protein [Sphingobium japonicum UT26S]
Length = 419
Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 52/421 (12%), Positives = 111/421 (26%), Gaps = 70/421 (16%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
R GK+ + + G + + + + T +++LW + W+ S
Sbjct: 14 RRGGKSIAILYYIFMRCLLYAGSTHLIVRRTRTACESSLWRQTLNWM-----LDHMADPS 68
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ + D+ Y + + T I +E S
Sbjct: 69 GAPLREKVKLNSSDLIAYFDNGSYIM----FDGLDENRLDKVLGTEYQTIWMNEVSEFD- 123
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSG------KFYEIFNKPLDDWKRFQIDTRTVE 259
++ + S +G ++ + DW
Sbjct: 124 ---------WSDVQQLAGCLNGSPTHNDNGLPIVRKMVFDCNPRFESDWDCKVFRDGQNP 174
Query: 260 G---------------IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
+ E + D + G + Q+ ++ L+ E
Sbjct: 175 VNNQPLNDVQKYGKVKVQNVDEEYLAIYANADPRTRARYLDGDWSAQNDNAIFDLDNFER 234
Query: 305 ALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR------TTNN 358
+++G D A + + + + + DL
Sbjct: 235 NRRFGIFAKDLERIVIGVDPASKSKKESDLTGIIVAGMLKDEAYILADLTGKYTPEQVAQ 294
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE--L 416
K++ + Y+ D+II++ NN G + L ++ L R E
Sbjct: 295 KVTEAFDTYQADSIIVETNNGGDWIENGLRQYAPNLPVKQVTASRGKLT-----RAEPIA 349
Query: 417 HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKG-AKSTDYSDGLMYT 475
+ D + + L++ E +G AKS D D L++
Sbjct: 350 LIYAQDKVHHVG-----HNLSELETQ-----------MYEFGMERGAAKSPDRMDALVWA 393
Query: 476 F 476
Sbjct: 394 L 394
>gi|292496028|gb|ADE29129.1| terminase [uncultured virus]
Length = 509
Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 47/365 (12%), Positives = 90/365 (24%), Gaps = 36/365 (9%)
Query: 36 FPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA 95
P G P W+ + A AG G GKT L A
Sbjct: 41 RPDGMDWDPESNILTYDRWEAQ--------RRAIETTNQEHTDIAAFLAGYGSGKTLLGA 92
Query: 96 WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
++ + L + + T + + + L S + P S
Sbjct: 93 RWLIKQALQYDSSRFLALGIDFQKARDTTFRVLFEQLP-----GDRTGIVTSSYNGPEES 147
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL--- 212
++ D + D + + + DE D ++ +
Sbjct: 148 PIVVDYNRKDHRLTLVNDTVIKLGSADRWNRYAGDSYGGVWADEVGHYGDDLHDLLEMLG 207
Query: 213 GFLTERNANRF--WIMTSNPRRLSGKFYEIFNKPLDDWK-----RFQIDTRTVEGIDPSF 265
L + W +T N + + E D + T + S
Sbjct: 208 SRLRGVGGPQTQLWTLTGNGKNAAFDIIERGLDANGDKIGLNIETVKASTLENPYLSDSE 267
Query: 266 HEGIIARYGLDSDVTRVEV------CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
E +YG S + G +D SFI + + N +
Sbjct: 268 KERFKRQYGNTSREGQALHGGFSAGEGNLLNRDQLSFIDKSNYDGGENLVFYIGVDLAYV 327
Query: 320 MGCDIAEEGGDNTVVVLRRGP-------VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
A+ + + G + + L+ + +S + +
Sbjct: 328 ESKGKAKANDSDYTAAVLVGYDRSNGKAYVLDVERERGMTLQQSITWLSQFAXRVPQPTV 387
Query: 373 IIDAN 377
I+
Sbjct: 388 KIEDV 392
>gi|226949140|ref|YP_002804231.1| putative phage terminase, large subunit [Clostridium botulinum A2
str. Kyoto]
gi|226841904|gb|ACO84570.1| putative phage terminase, large subunit [Clostridium botulinum A2
str. Kyoto]
Length = 572
Score = 50.3 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/306 (12%), Positives = 81/306 (26%), Gaps = 31/306 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISV 110
+Q + + + I GR GK+ LN L +L + +
Sbjct: 77 QFQEFILGSLIGWVTK--DKEYRRFRSSYIQLGRQNGKSFLNGILGTYLGNFSGYKYGKI 134
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
C+A Q K +W E++K++ + + +
Sbjct: 135 FCVATKHDQAK-IVWDEMNKFIQ-SDDDLGELFTVQEYKSTIICNLTNTVIKALGRDTKG 192
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN----------- 219
D + H M + + I ++ +T
Sbjct: 193 LDGLRPLLTVIDEYHA-HKDNQMYKLMEGGQ---KKIKQSLISVITTAGFELESPCHKMY 248
Query: 220 ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI--DPSFHEGI-------I 270
I+ + S Y DD +Q + + D E +
Sbjct: 249 KYCKQILEGTEKNESKFIYIAEMDEEDDLNNYQNWIKANPMLQYDREALENLIPVYKSAK 308
Query: 271 ARYGLDSDVTRVEVCGQFPQQDIDSFIPL-NIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
A D + + + + ++ + + A N+ I+G D++ G
Sbjct: 309 AIGSKDWNDFLTKQLNMWVEFTETKYMNMTAWNKCASNKTLEDFRGQEFILGIDLSSGGD 368
Query: 330 DNTVVV 335
++
Sbjct: 369 LTSICF 374
>gi|157168375|ref|YP_001456732.1| gp2, terminase [Corynebacterium phage BFK20]
gi|74268807|emb|CAB93907.2| gp2, terminase [Corynebacterium phage BFK20]
Length = 542
Score = 50.3 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/371 (11%), Positives = 93/371 (25%), Gaps = 46/371 (12%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R WQ F N + + + GR GKT + L LW + ++
Sbjct: 46 RPWQEWFFIH-ALELDPEKNYEDFRFRQLVLLVGRQNGKTLVMVILGLWKLFIDGCSEIV 104
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL-------GI 164
A + + TL + W + P+ +
Sbjct: 105 TAAQDLSVAEATLSNAFMLAKANPDLNQWLPWRMERGEMVPFMRTANGSNQIELAYAPVP 164
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
++ + + G ++ +A++++ T I + ER
Sbjct: 165 EALDVFGAMPKWFVVATNRGGGRSHSAELAMLDELREHTDFQSWGAITPAVAER-PRNQV 223
Query: 225 IMTSNPRRLSGKFYEIFNK---------PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGL 275
SN D + + E +G A
Sbjct: 224 YGFSNAGDEKSVVLRKQRNICLKEISDGITDQSQLAIFEWSAPEECSIFDRDGWAAANPS 283
Query: 276 --------------------------DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
D ++ R+E Q+ + + + + + +
Sbjct: 284 LGYGNRDEKTMLSLARAALDPEDDEADENLFRIEYLCQWVKTLEQGKVKRDTWDALKDSD 343
Query: 310 PCPDPYAPLIMGCDIAEEGGDNTVVV--LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
D AP+ + D+ +G ++ + R + +T + + +
Sbjct: 344 SRRDEDAPIEVAVDVDVDGRSTSITIASYREDGHVHLETVAHRTGYHWVTEWLRARLTTW 403
Query: 368 RPDAIIIDANN 378
+ I
Sbjct: 404 FSGTVGIQVKG 414
>gi|162452343|ref|YP_001614710.1| hypothetical protein sce4067 [Sorangium cellulosum 'So ce 56']
gi|161162925|emb|CAN94230.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
cellulosum 'So ce 56']
Length = 414
Score = 50.3 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/289 (10%), Positives = 69/289 (23%), Gaps = 23/289 (7%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTR----PGISV 110
+ + A +++ + + GR GK++ L + P V
Sbjct: 21 AQGFPAISAWWWSTLERFYMSGRRTLVLRVGRRGGKSSTLCRLAVVEALFGEHDIPPGDV 80
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ + A + ++L ++ +
Sbjct: 81 G-TVPIVSTSRDEAAARLRTIEAILRALGVDFRKAGEAIELQRDDGAPVAFKVFAASIAG 139
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIIN-DEASGTPDVINLGILGFLTERNANRFWIMTSN 229
T + + D A+ + I + + ++S+
Sbjct: 140 VSGFTA--------IAAICDEVAKWQDRDTAANPAEEILTSLRPTMAT-QPQARLFLSSS 190
Query: 230 PRRLSGKFYEIFNKPLDDWKR--FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
P Y+ F + + I E D+ V E
Sbjct: 191 PLSTLDAHYDAFERGETPTQCVAHAPTWTANPSIS----EQDTRALEADARVWAREYRAI 246
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
+F P + ++ A C ++ D + D+ +
Sbjct: 247 PQAAISAAFDP-DAVDRAFRDPGCSYHAGERVLVLDPSSGRNDSFTYAV 294
>gi|209542742|ref|YP_002274971.1| Terminase [Gluconacetobacter diazotrophicus PAl 5]
gi|209530419|gb|ACI50356.1| Terminase [Gluconacetobacter diazotrophicus PAl 5]
Length = 584
Score = 50.3 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/279 (14%), Positives = 73/279 (26%), Gaps = 29/279 (10%)
Query: 11 TEQKLFDLMWS--DEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHC-L 67
+ +L D + D + F + G WQL + +
Sbjct: 46 RDFELPDFYYDPTDPERFRFLTT-KLVYLAGVGSVGGTHVQI-EDWQLWYFSQLLGWKNA 103
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLW 125
N N KG++ RG KT AW L+++ V + Q +
Sbjct: 104 NGRNKGKRRFRKGSLWVARGNNKTGAGAWFCLYMLLCDGEWDPQVYSVGVDRDQASH-TF 162
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+ + P F+ ++ + + + + + R S+
Sbjct: 163 KAAANQIETNPK--LFKALGAQVYSK-FIKGIQNYKGENKLGVFKALARGASKMN----- 214
Query: 186 GHHNTYGMAIINDEASGTPDV-INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
DE PD I+ +R+ + ++ L YE +
Sbjct: 215 ---GLNIHFAFLDELHAYPDRLTYDVIVSGAKKRDQSLVLAASTAGLNLDSFGYEDYCYA 271
Query: 245 LD---------DWKRFQIDTRTVEGIDPSFHEGIIARYG 274
D + F EG DP
Sbjct: 272 RSVLRQEFDQQDEQFFSCVWEADEGDDPYSEATWEKANP 310
>gi|57234875|ref|YP_181104.1| hypothetical protein DET0357 [Dehalococcoides ethenogenes 195]
gi|57225323|gb|AAW40380.1| hypothetical protein DET0357 [Dehalococcoides ethenogenes 195]
Length = 441
Score = 50.3 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/342 (11%), Positives = 88/342 (25%), Gaps = 51/342 (14%)
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE---ERPDTFVG 186
K L ++ + ++ + Y +
Sbjct: 42 KNLVKCAPTFKPQLNISMMRLKDRLNEAGFGDIYQTEGGYIIRLNQARAVFLSAEPSANV 101
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
NT + + DEA + + + S
Sbjct: 102 VGNTAHLLLEVDEAQDVNQEKYSKEFKPMGATTNVTTVLYGTTWDSSSLLEEIKRQNIEK 161
Query: 247 DWK-----RFQIDTRTVEGIDPSFHEGI---IARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ K F+ D V +P++ R G + + + F
Sbjct: 162 EHKDGLKRHFRYDWEEVAAHNPAYLAYALSEKDRLGENHPLFLTQYRLLPVSGGGGMFSS 221
Query: 299 --LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN-----TVVVLRRGPVIEHLFD---- 347
L +++ + + P+ + G D+A E + T V LRR ++ + +
Sbjct: 222 EQLGLLKGSHPCQLYPENGKVYVAGLDLAGEDVQSAADLPTAVNLRRDSIVLTIAELDYT 281
Query: 348 ------------------WSKTDLRTTNNKISGLVEK-YRPDAIIIDANNTGARTCDYLE 388
W K+ L+ K ++ + +DA G +L
Sbjct: 282 FAKAPFNLPQVRLVCHCSWQGARHALLYEKLVELLGKVWKCRKVAVDATGLGQPVASFLR 341
Query: 389 M-LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL 429
LG + + Q + ++ L + + L
Sbjct: 342 ESLGSRILPFVFQPSS---------KSRLGFNLLSAVNSGRL 374
>gi|154247555|ref|YP_001418513.1| hypothetical protein Xaut_3628 [Xanthobacter autotrophicus Py2]
gi|154161640|gb|ABS68856.1| protein of unknown function DUF264 [Xanthobacter autotrophicus Py2]
Length = 690
Score = 50.3 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/369 (11%), Positives = 89/369 (24%), Gaps = 43/369 (11%)
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L K + + S + G
Sbjct: 324 RRLMPKSAKVWEGRRAFNTRGDHHYAKVVSVEYIGRGPVVSLGTSTKTLIA-DGFLGHNC 382
Query: 193 MAIINDEASGTPDVINLGILGFLTE--RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
N E S P L L + + + NP Y F + D
Sbjct: 383 TLYFN-ECSQIPYSSILVARTRLAQVVPGLMQRALYDLNPAGTGHWTYREFIEGRDPISG 441
Query: 251 FQIDTRTV---------EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
+ + E + + L R G + + + L++
Sbjct: 442 APLSAPDNFQHMFLNPGDNAKNLSPEFLRSLEALPEKQRRRFFDGMYVAEIDGALWTLDL 501
Query: 302 IEEALNREPCPDPYA--PLIMGCDIAEEGG------DNTVVVL----RRGPVIEHLFDWS 349
IE + P + +++G D + D +V+ G +
Sbjct: 502 IERCRSEPIAPGDHRLRRIVIGVDPSGAANKEDARSDEIGIVVAGMMDDGTAVILEDGTV 561
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ ++GL K+ D +I + N G +++ + V +
Sbjct: 562 RDGPSGWGKVVAGLYHKWGADRVIAERN-YGGAMVEFVILTADKSIPVSVITASRGKHIR 620
Query: 410 RNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ L+ + + +G + G +S D +
Sbjct: 621 AEPVSALYEQGKVR-HAGRFPEMED--------QFTNFSTSGYM--------GDRSPDRA 663
Query: 470 DGLMYTFAE 478
D ++ E
Sbjct: 664 DAAVWALTE 672
>gi|331662794|ref|ZP_08363717.1| putative phage terminase [Escherichia coli TA143]
gi|331061216|gb|EGI33180.1| putative phage terminase [Escherichia coli TA143]
Length = 407
Score = 50.3 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 59/375 (15%), Positives = 101/375 (26%), Gaps = 48/375 (12%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P FK I AG G GKT + + PGI+ A + Q++
Sbjct: 10 NVPQARFLSMPHKFKAYI-AGFGSGKTWVGCGGICKGTWEHPGINQGYFAPTYPQIRDIF 68
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ V E + ++ + Y S E+P T
Sbjct: 69 YPTV-------------EEVAADWGLNVKINEGNKEVHFYYGRQYRGTTICRSMEKPQTI 115
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTER------NANRFWIMTSNPRRLSGKFY 238
VG + DE P + R +T+ P +
Sbjct: 116 VGFKIGNAL---VDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYE 172
Query: 239 EIFNKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + Q T E + + ++ Y ++ + + GQF
Sbjct: 173 QFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNL 230
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ + N E P P+ +G D + VLR G +
Sbjct: 231 TSGTVYH-QFDRKLNNCEEVEQPGEPIYIGMDFNVGKMAGIIHVLRLGLPCAVTEIINAY 289
Query: 352 DLRTTNNKISGL--------VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYR 396
D I K R I DA+ ++ L+ G++V
Sbjct: 290 DTPDMIRIIKERFWLYDGNDYRKVREIYIYPDASGDSRKSSNASTTDIAQLKQAGFNVVV 349
Query: 397 VLGQKRAVDLEFCRN 411
D N
Sbjct: 350 NSSNPPVKDRVNSMN 364
>gi|329890492|ref|ZP_08268835.1| terminase GTA [Brevundimonas diminuta ATCC 11568]
gi|328845793|gb|EGF95357.1| terminase GTA [Brevundimonas diminuta ATCC 11568]
Length = 234
Score = 50.3 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 55/203 (27%), Gaps = 33/203 (16%)
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI-AEEGGDNTVVV----L 336
E+ G + D F ++ A R P + +++ D A GD +V
Sbjct: 41 QEMEGLVVEADGALFRAEDL---ARARGSRPARFERVVVAVDPPASAHGDACGIVAAGRR 97
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
R + + + ++ D ++ +AN G L
Sbjct: 98 DRTGYVLADRSARGLSPAGWARRAAETAREFDADLVLAEANQGGEMVRTLLGQANCPAQV 157
Query: 397 VLGQKRAVDLEFCRNRRTELHVKMAD---WLEFASLINHSGLIQNLKSLKSFIVPNTGEL 453
L R E + + + + + L S
Sbjct: 158 KLVHASRSKKA-----RAEPVAALYEQGQVVHCGAFPALEEEMMALGSEAP--------- 203
Query: 454 AIESKRVKGAKSTDYSDGLMYTF 476
GAKS D +D L++
Sbjct: 204 --------GAKSPDRADALVWAL 218
>gi|9629397|ref|NP_044616.1| DNA packaging terminase subunit 1 [Human herpesvirus 1]
gi|139646|sp|P04295|TRM3_HHV11 RecName: Full=Tripartite terminase subunit UL15; AltName:
Full=DNA-packaging protein UL15; AltName: Full=Terminase
large subunit
gi|59501|emb|CAA32330.1| UL15 [Human herpesvirus 1]
gi|222478345|gb|ACM62237.1| DNA packaging terminase subunit 1 [Human herpesvirus 1]
gi|290766049|gb|ADD60027.1| DNA packaging terminase subunit 1 [Human herpesvirus 1]
gi|290766127|gb|ADD60104.1| DNA packaging terminase subunit 1 [Human herpesvirus 1]
Length = 735
Score = 50.3 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/334 (12%), Positives = 81/334 (24%), Gaps = 35/334 (10%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
F+ +V L S + + R GKT L+ +++ GI + A+
Sbjct: 231 FLRLVFEIPLFSDAAVRHFRQRATVFLVPRRHGKTWFLVPLIALSLASFRGIKIGYTAH- 289
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ ++ E+ L + + T
Sbjct: 290 IRKATEPVFEEIDACLRGWFGSARVDHVKGETISFSFPDGSR---------------STI 334
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSG 235
G + DEA+ I+GFL + N ++ ++N + +
Sbjct: 335 VFASSHNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQANCKIIFVSSTNTGKASTS 394
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
Y + + + +
Sbjct: 395 FLYNLRGAADELLNVVTYICDDHMPRVVTHTNATA---------------CSCYILNKPV 439
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT 355
FI ++ D + I+G E G D V+ G + T+
Sbjct: 440 FITMDGAVRRTADLFLADSFMQEIIGGQARETGDDRPVLTKSAGERFLLYRPSTTTNSGL 499
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ V+ A+ TG
Sbjct: 500 MAPDLYVYVDPAFTANTR--ASGTGVAVVGRYRD 531
>gi|251778259|ref|ZP_04821179.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082574|gb|EES48464.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 416
Score = 50.3 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/335 (12%), Positives = 101/335 (30%), Gaps = 32/335 (9%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
G G GK+ ++ + + + LK + +A V W
Sbjct: 30 GGAGSGKSVFVFQKMVLKYLKYENRTCLVIRKINNTLKDSCFALV-----KSILSDWQLY 84
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
++ ++ + SL + + P+ + II +E +
Sbjct: 85 DQCKINKTDLTIELPNGSLFLFKG----------LDDPERIKSING--IDDIIVEECTEI 132
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP--------LDDWKRFQIDT 255
D + L + + NP S + + P L++ +
Sbjct: 133 DDFTFDQLCLRLRSKKPYNQVHVMFNPVSKSNWVFSRWFNPMNSNPRTDLNNTMVLKTTY 192
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPY 315
R + + + + ++ + R+ G+F + + E + +
Sbjct: 193 RDNKFLPQDYIDNLLEMKATNRVYYRIYALGEFATLSKLVYTNWEVKEFDYKQILKENYN 252
Query: 316 APLIMGCDIAEEGGDNTVV---VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
+ D D T +L I +FD + N++I+ +
Sbjct: 253 RQAVFNLDFG-YTNDPTAFGAEILDEPNKIIWIFDEFQEK-GLLNDEIAEKITDLGYRKE 310
Query: 373 IIDANNTGARTCDYLEMLGYH--VYRVLGQKRAVD 405
+I ++ ++ D L+ G + V + G+ ++
Sbjct: 311 VIVCDSAEPKSIDELKRNGINRAVPSIKGRDSIIN 345
>gi|168211354|ref|ZP_02636979.1| putative phage terminase, large subunit [Clostridium perfringens B
str. ATCC 3626]
gi|170710621|gb|EDT22803.1| putative phage terminase, large subunit [Clostridium perfringens B
str. ATCC 3626]
Length = 566
Score = 50.3 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 44/344 (12%), Positives = 89/344 (25%), Gaps = 56/344 (16%)
Query: 29 SNFVLHFFPWGEKGTPLEG-FSAPR----SWQLEFMEVVDAHCLNSVNNPNPEVFKGAIS 83
+ VL F+ W G R WQL + + K IS
Sbjct: 53 LDEVLDFYEWARLFKHRTGIVKGQRIEIIPWQLFIAGNLFGW--KNKKTDFRRFKKAFIS 110
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GR K+ L + + + S I L ++ E++ LS K +F+
Sbjct: 111 VGRKNAKSELLSLIATYECFITDDNSEIYLTGWNKDGSDIVYREINYHLSHPYEKDFFKG 170
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG- 202
+ + + + + + I DE
Sbjct: 171 KYKTAY---------------GKITHLKSGSFIQPLSREAKNTDNANNPSLAIVDEYKDH 215
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPR------------------------RLSGKFY 238
I + +T NA I T+
Sbjct: 216 VTSEIYDNLNTGMTRPNALIVIISTAGTNINCPMMFEYKYVSKVLNPDIKDVENDEYFIM 275
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFH--EGIIARY------GLDSDVTRVEVCGQFPQ 290
+ DD K ++ + + + E + + + + +
Sbjct: 276 ICELEKDDDIKDEKVWPKANPIVTLTEFGMEKLRGDLKVALDAPEKMRIFKTKNMNIWCD 335
Query: 291 QDIDSFIPLNIIEEA-LNREPCPDPYAPLIMGCDIAEEGGDNTV 333
D ++ + E+A + P I+G D++ + ++
Sbjct: 336 DREDGYMNMEKWEKAETEKNLEDFTGEPCILGVDLSTKLDLTSI 379
>gi|255262025|ref|ZP_05341367.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255104360|gb|EET47034.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 510
Score = 50.3 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/342 (10%), Positives = 80/342 (23%), Gaps = 45/342 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + P V + + Q + + S L+
Sbjct: 12 ILGGRGAGKTRAGAEWVRAQVEGSGPLDVGPATRVALVGETIEQAREVMVFGESGILACS 71
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P+ + A
Sbjct: 72 PDDRRPVWSTTRRQL------------------CWPNGAVAQLFSASDPERLRGPQFDAA 113
Query: 196 INDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
DE + + + + R + T+ R G + +
Sbjct: 114 WVDELAKWKKGQEAWDMLQFGMRLGDDPRVCVTTTP--RNVGVLRSLLAR-SSTVTAHGT 170
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ +F + + RY + + R E+ G + +E +
Sbjct: 171 TEANAAHLADAFLDEVRTRYA-GTRLGRQELDGVLLADAEGALWTSKGLE--ASHVEVVP 227
Query: 314 PYAPLIMGCDI---AEEGGDNTVVVL----------RRGPVIEHLFDWSKTDLRTTNNKI 360
+++ D G D+ +++ + +
Sbjct: 228 QCDRVLVSVDPPVTGHMGSDDCGIIVVGVTMDGPPQDWRAYVIEDATVAAASPLEWAEAA 287
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR 402
++ + ++ + N G+ + + V +
Sbjct: 288 VAAYHRHGAECLVAEVNQGGSLVEAVVRQVDPLVSYTSVRAS 329
>gi|226363443|ref|YP_002781225.1| hypothetical protein ROP_40330 [Rhodococcus opacus B4]
gi|226241932|dbj|BAH52280.1| hypothetical protein [Rhodococcus opacus B4]
Length = 441
Score = 50.3 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 44/348 (12%), Positives = 94/348 (27%), Gaps = 37/348 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + +S + F+ A+ R GK + L + +++
Sbjct: 4 DEWQQHVLIQSLGRRKDSKWSS----FEVALLVPRQNGKGAVIEARELAGLFLIGEQTLL 59
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ K + + + P + Q + ++ + L
Sbjct: 60 HSAHEFKTAKEAYLR-IKQLIEQTPELNDLTKQFR------FSNEDVSVELHPKKGRSVG 112
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+ + G I DEA PD ++ ++ R+ + W +S P
Sbjct: 113 ARLKFVARSKGSGRGFSGD---LNILDEAYELPDEALAALMPTMSARDNPQLWYTSSAPL 169
Query: 232 RLSGKFYEIFNKPL-DDWKRFQIDTRTVEGIDPSFHEGII-----------------ARY 273
S + + + + + D HE R
Sbjct: 170 PHSAVLRRVQERGRQGGRRLAYFEWSAPDDADLDDHEAWRLANPGYGIRIDDEFIESERE 229
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
+ E G D+ I + ++ + + +G ++ + ++
Sbjct: 230 AMTDGDFARERLGIADVGRRDAPIGAVLWKDCGDVMSTVPDGNQVALGLAVSLDRTQVSL 289
Query: 334 VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA 381
V G + L + RT + L + DA G
Sbjct: 290 AVA--GRNADGLLHVELLETRTGTDW---LYDMAMSAYRGSDAMGIGL 332
>gi|58040880|ref|YP_192844.1| Phage DNA packaging protein [Gluconobacter oxydans 621H]
gi|58003294|gb|AAW62188.1| Phage DNA Packaging Protein [Gluconobacter oxydans 621H]
Length = 435
Score = 50.3 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 54/432 (12%), Positives = 110/432 (25%), Gaps = 73/432 (16%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK-TTLWAEVSKWLSLLPNK 138
+ G GKT L V+ PG + LK T + K + L
Sbjct: 23 ILLRGGSRSGKTFLLVRAVVIRAVKAPGSRHGIFRHRFNALKHTIIGDTFPKVMRLCFPD 82
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ + + +L S+ + + D + +
Sbjct: 83 LPYTLNRTDWY----------VTLPNGSEILF-----HGLDSSDRTEKILGLEFATVYMN 127
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMT-----SNPRRLSGKFYEIFNKP--------- 244
EAS L R A + + +NP S Y +F +
Sbjct: 128 EASQIS----YAARNMLLTRLAQKTCLSVKEYIDANPPTTSHWLYSLFEQKIEPKSGEPL 183
Query: 245 --LDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
DD+ QI+ + + P + + A + + G + + L+
Sbjct: 184 PYPDDYATMQINPDSNRANLSPEYLAQLEALPEKERQRF---LFGNYQTAIDGALWTLDR 240
Query: 302 IEEALN-----REPCPDPYAPLIMGCDIA------EEGGDNTVVVL----RRGPVIEHLF 346
I R +++ D + + D + + R G
Sbjct: 241 IRRLAQVTNETRAAVLADMRRIVVSVDPSGCSGNEDYKSDEIGISVCGIDRDGNGHVFAD 300
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ ++ + D I+ + N GA + + L
Sbjct: 301 LTCRAGPAGWAKVAIDAMDLWGADRIVAEKNFGGAMVEQTIRSVRATAPVKLVTASRGKT 360
Query: 407 EFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKST 466
L+ + + + + GA+S
Sbjct: 361 ARAEPI-AALYEQGK-VFHHGRFPDLEEQLCQFSASGFQ----------------GARSP 402
Query: 467 DYSDGLMYTFAE 478
D +D +++ +E
Sbjct: 403 DRADSMVWGLSE 414
>gi|330989588|gb|EGH87691.1| hypothetical protein PLA107_31509 [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 433
Score = 50.3 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 51/417 (12%), Positives = 102/417 (24%), Gaps = 59/417 (14%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
AG G GKT + + + P I+ A + Q++ + + + W
Sbjct: 22 VAGFGSGKTWVGCAGICKHVWEWPRINSGYFAPTYPQIRDIFFPTIEEV-----AFDWGL 76
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ Y + S E+P T VG + + D
Sbjct: 77 KVKTK--------ESDKEVEFYSGGQYRSTTICRSMEKPQTIVGFKIGHALVDELDVLPA 128
Query: 203 TPDVI-NLGILGFLT--ERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRFQI 253
I+ + +T+ P + + + + + Q
Sbjct: 129 LKAEHAWRKIIARMRYNAPGLKNGVDVTTTPEGFKFVYQQFVKQLREKPGMQGMYGLVQA 188
Query: 254 DTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
T E + P + ++ Y + + GQF + S I +
Sbjct: 189 STFDNELNLPPDYIPSLMESY--PPQLILAYLNGQFVNLNAGS-IYHAYDRKLNGCFDSV 245
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW-SKTDLRTTNNKISGLVEKYRPD- 370
PL +G D V R + ++ D +I +Y
Sbjct: 246 QDGEPLFIGMDFNVGKMAAITHVKRADGKPRAVDEFIDGFDTPDMIRRIKERYWRYNGKD 305
Query: 371 -------AIIIDANNTGARTCDY-------LEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
I DA+ ++ + L G+ V D N +
Sbjct: 306 YEKTCEIRIYPDASGGSRKSVNASETDIAILRQAGFSVIAPDANPPVKDRINAMN---AM 362
Query: 417 HVKM----ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYS 469
+ + + + E + G + +
Sbjct: 363 FCNANGERRYLINPLRCP----TYADGLEQQVWGPNG------EPDKKSGVDHANDA 409
>gi|269119880|ref|YP_003308057.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
ATCC 33386]
gi|268613758|gb|ACZ08126.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
ATCC 33386]
Length = 416
Score = 49.9 bits (117), Expect = 9e-04, Method: Composition-based stats.
Identities = 33/344 (9%), Positives = 93/344 (27%), Gaps = 20/344 (5%)
Query: 68 NSVNNPNPEVFKGAISAG-RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
+ + G RG K+ A +++ M + + + L+ + ++
Sbjct: 11 KGYKTFWESKKRYRVLKGSRGSKKSKTTALWIIYNMMKHKESNTLVIRKVFNSLRDSCYS 70
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
++ + L H ++ L + G+D + +
Sbjct: 71 DLLWAIERLGVSHLWKSTKSPLELVYKPTGQKILFRGLD-----------DPLKLTSITV 119
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW----IMTSNPRRLSGKFYEIFN 242
I + + + + + W + F+
Sbjct: 120 EKGYLCWVWIEEAYELMSEDAFNKLDLSIRGKLPEHLWKQITFTFNPWNEKHWLKARFFD 179
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+D + E +D + + RVE ++ + I N
Sbjct: 180 VEDEDILALTTTYKINEFLDDDDRKVFEKMKRDNPKRYRVEGEAEW--GIAEGLIFENWE 237
Query: 303 EEALN-REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT-DLRTTNNKI 360
E+ + RE G D + + ++ + + N++I
Sbjct: 238 EKEFDYREISKRKGVVSRFGLDFGYTNDPSAFTGYLEDEKNKEIYVFDEFYKSGMLNDEI 297
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
+ ++ I +++ ++ + ++ G R + +
Sbjct: 298 ANQIKYMGYAKEEIIGDSSEQKSIEEIKRYGIRRIRPSVKGKDS 341
>gi|217961103|ref|YP_002339671.1| hypothetical protein BCAH187_A3729 [Bacillus cereus AH187]
gi|229140322|ref|ZP_04268877.1| DNA packaging protein Gp17 [Bacillus cereus BDRD-ST26]
gi|217067223|gb|ACJ81473.1| conserved hypothetical protein [Bacillus cereus AH187]
gi|228642883|gb|EEK99159.1| DNA packaging protein Gp17 [Bacillus cereus BDRD-ST26]
Length = 525
Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 43/294 (14%), Positives = 87/294 (29%), Gaps = 45/294 (15%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MS++L T + E I ++ +F F Q +F+
Sbjct: 1 MSKKLTTKEKLEL----------INNDPVLWLKNFVKITTNTGDYIPFVVNDQ-QKKFIN 49
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ + I+ R IG +T++ L LW+ RP + + ++ +
Sbjct: 50 EMGRFNV--------------IAKARQIGFSTMSLALCLWMAMNRPRTNYMIVSYKQES- 94
Query: 121 KTTLWAEVSKWLSLLP-NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
T+L+ ++ LP +K F + + + + +L TY
Sbjct: 95 STSLFDKLKMMYDDLPHDKFKFPKDTQNNRNQLKFDNGSSITLATAGGKDVGRGTTYEYI 154
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
F + N + + ++A L I N+ + M +
Sbjct: 155 LLSEFAFYENQDSILLSAEQALAKSKTSKLVIETTSNGFNSYQTLFMNA----------- 203
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
K +K F S+ + Y + G+ +D
Sbjct: 204 --YKGESKYKAFFF-----PFYSSSYAKQFKDDYDEAEIWYKENNKGKRLTKDD 250
>gi|29028647|ref|NP_803336.1| terminase-large subunit [Staphylococcus phage phi 12]
gi|18920571|gb|AAL82311.1| terminase-large subunit [Staphylococcus phage phi 12]
Length = 453
Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 73/304 (24%), Gaps = 30/304 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLL------- 135
GR GKTT + + + +S G + LAN Q + L+ E +
Sbjct: 2 GRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASPKLRENF 60
Query: 136 -PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDTFVGHHNT 190
P + + P SD + + +
Sbjct: 61 RPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQ 120
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKPLD 246
+ I + + R +
Sbjct: 121 PLLIYITTAGYQLDGPLVNMVEA------GRDTLDRIIEDERTFYYLASLDDDDDINDSS 174
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEA 305
+W + + + E A+ D + F D SFI +++
Sbjct: 175 NWIKANPNLGVSIDLAEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKN 234
Query: 306 LNREPCPD-PYAPLIMGCDIAEEGGDNTV---VVLRRGPVIEHLFDWSKTDLRTTNNKIS 361
+ + P +G D++E L G V W +N+
Sbjct: 235 NDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHKVEYSNEKI 294
Query: 362 GLVE 365
+E
Sbjct: 295 PYIE 298
>gi|332800334|ref|YP_004461833.1| Terminase [Tepidanaerobacter sp. Re1]
gi|332698069|gb|AEE92526.1| Terminase [Tepidanaerobacter sp. Re1]
Length = 521
Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 53/493 (10%), Positives = 119/493 (24%), Gaps = 101/493 (20%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + GK+ L A + L+L G V
Sbjct: 34 PWQDKIVRDIFGTVKEDGYRQYNTA---YVEIPKKNGKSELAAAIALYLTCGDGEWGAEV 90
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q + ++ + P LS +
Sbjct: 91 YGCAADRQQA-SIVFDVAVDMVDQCPALKKRIKPVLSQKRLVYMP--------------- 134
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE--RNANRFWIMTS 228
Y + + H ++ DE P+ ++ + R F+++T+
Sbjct: 135 -TASFYQVLSAEAYT-KHGLNVHGVVFDELHAQPNRQLYDVMTKGSGDARKQPLFFLITT 192
Query: 229 NPRRLSGKFYEIFNKPLD----------------------DWKRFQIDTRTVEGIDPS-F 265
YE+ K D DW ++ + +D +
Sbjct: 193 AGTDRHSICYEVHQKAEDILRGKRVDPTFYPVIYGIDDDDDWADEKVWRKANPSLDHTID 252
Query: 266 HEGIIA------RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
E + A + + ++ R Q+ +Q + E + +P
Sbjct: 253 IEKVRAAFQNAKQNPAEENLFRQLRLNQWVKQSVRWMPMHVWDECSFKVDPEKLKGRKCY 312
Query: 320 MGCDIA------------------------------------EEGGDNTVVVLRRGPVIE 343
G D++ D+ + +
Sbjct: 313 GGLDLSSSIDITAFVLVFPPVPDDDKYYVLPYFWIPEENMKLRVRRDHVPYDIWQSQGYL 372
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
+ + I L + Y I D + LE G+ V +
Sbjct: 373 QTTEGNVIHYGFIEKFIEELWQDYDIREIAFDRWGA-VQMTQNLEGAGFTVVPFGQGFKD 431
Query: 404 VDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+ + + + + + ++ + G + + K
Sbjct: 432 MSPPT----KELMKLTLEKRIAHGGHP----VLSWMMDNIHIRTDPAGNIK--PDKEKST 481
Query: 464 KSTDYSDGLMYTF 476
+ D + L+
Sbjct: 482 EKIDGAVALIMAL 494
>gi|114318803|gb|ABI63477.1| UL15 [Human herpesvirus 1]
Length = 735
Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 37/306 (12%), Positives = 73/306 (23%), Gaps = 34/306 (11%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GKT L+ +++ GI + A+ + ++ E+ L +
Sbjct: 259 PRRHGKTWFLVPLIALSLASFRGIKIGYTAH-IRKATEPVFEEIDACLRGWFGSARVDHV 317
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ T G + DEA+
Sbjct: 318 KGETISFSFPDGSR---------------STIVFASSHNTNGIRGQDFNLLFVDEANFIR 362
Query: 205 DVINLGILGFLTERNANRFWIMTSN-PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
I+GFL + N ++ ++N + + Y + +
Sbjct: 363 PDAVQTIMGFLNQANCKIIFVSSTNTGKASTSFLYNLRGAADELLNVVTYICDDHMPRVV 422
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
+ + FI ++ D + I+G
Sbjct: 423 THTNATA---------------CSCYILNKPVFITMDGAVRRTADLFLADSFMQEIIGGQ 467
Query: 324 IAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
E G D V+ G + T+ + V+ A+ TG
Sbjct: 468 ARETGDDRPVLTKSAGERFLLYRPSTTTNSGLMAPDLYVYVDPAFTANTR--ASGTGVAV 525
Query: 384 CDYLEM 389
Sbjct: 526 VGRYRD 531
>gi|116492768|ref|YP_804503.1| Phage terminase-like protein, large subunit [Pediococcus
pentosaceus ATCC 25745]
gi|116102918|gb|ABJ68061.1| Phage terminase-like protein, large subunit [Pediococcus
pentosaceus ATCC 25745]
Length = 632
Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 42/324 (12%), Positives = 90/324 (27%), Gaps = 50/324 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PG 107
WQ M ++ + + +S RG GKT L A + +
Sbjct: 99 MPWQKFIMAMLIGWRNDDGGK---RFSRAIVSVSRGQGKTYLMAIITAYSFLIESLGLSN 155
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + + Q L + L+ + F+ + + S
Sbjct: 156 QDYLVSSINYKQTSKIL-GYIKSMLAKIATIEPFKTLMQDSGLDTRTLSSQSDQVVMSSN 214
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWI 225
+ ++ + D+F + I DE I+ + G + RN I
Sbjct: 215 NNKLRAISHEAGQYDSF------HFTTAIFDEIGEIKTRQKISKIVSGQVKVRNKQFIQI 268
Query: 226 MTSNPR----------------------------RLSGKFYEIFNKPLDDWKRFQIDTRT 257
T+ P L ++ D
Sbjct: 269 STAYPDPTVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDDLNETYKPDTWVKSNPLLD 328
Query: 258 VEGIDPSFHEGIIARYGLDS-----DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ G+ + D+ + + + + +Q DSF+ L +E+A+ +
Sbjct: 329 LPSQREVLLNGLTDKRDSDALSGTLNDFQNKNLNLWLEQSTDSFLKLPDVEKAIVQSFSF 388
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVL 336
D + +G D + + + +
Sbjct: 389 D-DRQVYIGFDYSMFSDNTALAFV 411
>gi|317483882|ref|ZP_07942820.1| hypothetical protein HMPREF0179_00169 [Bilophila wadsworthia 3_1_6]
gi|316924839|gb|EFV45987.1| hypothetical protein HMPREF0179_00169 [Bilophila wadsworthia 3_1_6]
Length = 454
Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 41/340 (12%), Positives = 83/340 (24%), Gaps = 27/340 (7%)
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET----QLKTTLWAEVSKWL 132
AI+ GKT V WL P + A S Q A VS W
Sbjct: 46 ARNLAITIPPRHGKTLAAHDTVEWLFGMVPESRWLYTAYSADLAVSQTMRIRDALVSDWY 105
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ F + + + + L + +R +
Sbjct: 106 RRM-----FPDTQVRGNRQNFVTTAAGGELYGVGMTGTLTGFGAGRKRREFGGAIVIDDP 160
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRF--WIMTSNPRRLSGKFYEIFNKPLDDWKR 250
++ ++ +N L R + ++ + W+
Sbjct: 161 LSAEESRSATRRAHVNEWYTQTLKSRRNHDGTPILLIMQRLHTEDLVGHVLATKPGLWRV 220
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGL-----DSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
++ + + E D + + P + I +
Sbjct: 221 LKLSAMDEATGEMLWPETFSRESAELMREVDPMTFYAQYQQE-PMIPGGAMIKKEWWQW- 278
Query: 306 LNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLRRGPV--IEHLFD----WSKTDLRTT 356
+ + L D A+ D +V+ + G ++ + W +L
Sbjct: 279 FDFDGRYRFDGMLFATADTAYKAKSTADASVIRVWHGTRNALDCVDCAYGRWEFPELLHA 338
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ ++ I+ TG L G Y
Sbjct: 339 AQFVYERWKERGLRQFFIEDKATGTPLEQTLRRQGVPAYG 378
>gi|152975091|ref|YP_001374608.1| hypothetical protein Bcer98_1291 [Bacillus cereus subsp. cytotoxis
NVH 391-98]
gi|152023843|gb|ABS21613.1| conserved hypothetical protein [Bacillus cytotoxicus NVH 391-98]
Length = 525
Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 53/371 (14%), Positives = 109/371 (29%), Gaps = 65/371 (17%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP-NKHW 140
I+ R IG +T++ L LW+ RP + + ++ + T+L+ ++ LP +K
Sbjct: 57 IAKARQIGFSTMSLALCLWMAMNRPRTNYMIVSYKQES-STSLFDKLKMMYDDLPHDKFK 115
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
F + + + + +L TY F + N + + ++A
Sbjct: 116 FPKDTQNNRNQLKFDNGSSITLATAGGKDVGRGTTYEYILLSEFAFYENQDSILLSAEQA 175
Query: 201 SGTPDVINLGILGFLTERNANRFWIMT-----SNPRRLSGKFYEIFN--KPLDDWKRFQI 253
L I N+ + M S + FY + DD+ +I
Sbjct: 176 LAKSKTSKLVIETTSNGFNSYQKLFMNAYKGESKYKAFFFPFYSSSYAKQFKDDYDEAEI 235
Query: 254 DTRTVE---GIDPSFHEGIIARYGLDSDVTR--------------VEVCGQFPQQDIDSF 296
+ + E + + +FP ++SF
Sbjct: 236 WYKANNKGKRLTKDDLEQEELFLYEQRATLKQLMWRRWKLLDMSLQQFYQEFPATPMESF 295
Query: 297 IPLNI--------IE-------EALNREPC--------------------PDPYAPLIMG 321
I + +E L R+ P G
Sbjct: 296 ISSGLNVFDQQKIVERLKYIKKPFLYRDVKMFIPDSIAKYIGKSLMIYELPVEGVRYYAG 355
Query: 322 CD-IAEEGGDNTVVVLR--RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
D + GGD + + + G + +K + + + + Y + ++ N+
Sbjct: 356 VDTASGSGGDYSTISILNADGEQVLSF-YDNKIPVYEFAKLLDTIGKFYNYAFLTVERNS 414
Query: 379 TGARTCDYLEM 389
G + L
Sbjct: 415 FGTPILERLRK 425
>gi|168213080|ref|ZP_02638705.1| conserved hypothetical protein [Clostridium perfringens CPE str.
F4969]
gi|170715316|gb|EDT27498.1| conserved hypothetical protein [Clostridium perfringens CPE str.
F4969]
Length = 526
Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 29/300 (9%), Positives = 71/300 (23%), Gaps = 49/300 (16%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSW---QLE 57
MS T + + + + FV + +K P W Q +
Sbjct: 1 MSNLTTTEEKFLK----------VWNNPYLFVKNLMQINDKIGK----KVPFKWNKMQKD 46
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
F+E +D + I R G + + ++ T P + L++++
Sbjct: 47 FVENMDNYN--------------IILKARQGGMSVCICSVAIYYAITEPECVCMLLSHND 92
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
+ + ++ + +P + ++ S
Sbjct: 93 ESTRAI-FNKLKAIYNSIPEPIKLPLIR-----------------NNRAELQLANGSIIS 134
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
I E + I L L + ++ F
Sbjct: 135 CSTLGRTDKGRGNTAKLIHLSEFAFVDSEIATKQLLSLEQTLRPDGNLIIETTANGLNFF 194
Query: 238 YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
+ + K ++ F E + + + ++ +
Sbjct: 195 HNHYQKSKKGENAYKSFFYNYIDTSCMFTEQYKQYKKIFKNRNGHDFGMDDLTEEELQLL 254
>gi|186472255|ref|YP_001859597.1| terminase [Burkholderia phymatum STM815]
gi|184194587|gb|ACC72551.1| Terminase [Burkholderia phymatum STM815]
Length = 581
Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 44/379 (11%), Positives = 97/379 (25%), Gaps = 40/379 (10%)
Query: 20 WSDEIKLSFSN-FVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
W + + F G P WQ + + +
Sbjct: 55 WDLPAAMRAISYFADVLCLNGGDFEGKPFVLLP--WQKFIVGSLFGWKRRDGSR---RFR 109
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGIS-VICLANSETQLKTTLWAEVSKWLSLLPN 137
+ + AG+G GK+ L A + L++++ + I A + L+ + + L P
Sbjct: 110 EAYVEAGKGCGKSPLAAGVGLYMLTADGEMRPEIYAAATRRDQAMILFRDAVAMVDLSPE 169
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF-----VGHHNTYG 192
S L + + + + + S + H
Sbjct: 170 ------LSNRLVKSGRGERCYNLAYYAKGGWFRPIASDSSGQSGPRPHCALIDEIHEHRD 223
Query: 193 MAIINDEASGTPDVINLGILGFLTERN---ANRFWIMTSNPRRLSGK------------- 236
+IN +G + +T + W + +
Sbjct: 224 PTVINIMRAGKKGRSQPLLF-MITNSGFDRTSICWEQHQYGTNIVSRAIEDDAYFAYICA 282
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFH-EGIIARYGLDSDVTRVEVCGQFP-QQDID 294
E D+ +++ + I ++ E I G+ S + V +
Sbjct: 283 LDEDEEPFEDESCWIKVNPSLGKTIQKTYLREQIHQARGMPSQESTVRRLNFCQWVDAEN 342
Query: 295 SFIPLNIIEEA--LNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVIEHLFDWSKT 351
+I ++ + + G D++ V+R+ F
Sbjct: 343 PWIDGDLWRACEVEDLPDEVFAGRTVYGGLDLSGVRDLSALAYVVRQEDDSVDAFIDFFI 402
Query: 352 DLRTTNNKISGLVEKYRPD 370
++I Y
Sbjct: 403 PRDGLADRIKRDNAPYEAW 421
>gi|66395816|ref|YP_240151.1| ORF009 [Staphylococcus phage EW]
gi|62636238|gb|AAX91349.1| ORF009 [Staphylococcus phage EW]
Length = 421
Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 44/377 (11%), Positives = 114/377 (30%), Gaps = 41/377 (10%)
Query: 97 LVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD 156
+++ + R ++ + + ++ L T+++ ++ + H F+++ +
Sbjct: 46 IIITQLIMRYPMNAVVVRKTDNTLATSVFEQIKWAIEQQKVSHLFKVKVSPM-------- 97
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
+ ++ + + ER + + + I + A + I +
Sbjct: 98 -EITYMPRGNRIIFRGAQ--NPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSML 154
Query: 217 ERN-----ANRFWIMTSNPRRLSGKFYEIFNK--PLDDWKRFQIDTRTVEGIDPSFHEGI 269
+F+ + P+R + + D+ I F +
Sbjct: 155 RGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQPDNTFVHHSTYLDNPFIAKQFIDEA 214
Query: 270 IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
A + R E G+ +P N ++ + + + D
Sbjct: 215 EAAKERNELRYRWEYLGEAIGSG---VVPFNNLQIEKIPDELFRSFDNIRNAVDFG-YAT 270
Query: 330 DNTVVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
D V VI + ++ + + Y+ D I D+ ++ D
Sbjct: 271 DPLAFVRWHYDKKKRVIYAVDEYYGVQISNRQFGKWLWSKGYQSDDIYADSAEP--KSID 328
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW--LEFASLINHSGLIQNLKSLK 443
L + + R+ G K+ D E + D ++ N + + +++
Sbjct: 329 ELRKE-HGIKRIKGVKKGPDSVEYG----EQWLNDLDAIVIDPNRTPN---IAREFENI- 379
Query: 444 SFIVPNTG--ELAIESK 458
F G + +E K
Sbjct: 380 DFETDKDGNVKPKLEDK 396
>gi|9629774|ref|NP_045262.1| DNA packaging terminase subunit 1 [Equid herpesvirus 4]
gi|2605992|gb|AAC59564.1| 47/44 [Equid herpesvirus 4]
Length = 734
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 48/311 (15%), Positives = 81/311 (26%), Gaps = 45/311 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ---LKTTLWAEVSKWLSLLPNKHWF 141
R GKT L+ ++T GI + A+ + + A + +W P H
Sbjct: 260 PRRHGKTWFLVPLIALALATFKGIKIGYTAHIRKATEPVFDEIGARLRQWFGNSPVDHVK 319
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
P T G + DEA+
Sbjct: 320 GENISFSFPDG-------------------SKSTIVFASSHNTNGIRGQDFNLLFVDEAN 360
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
I+GFL + N ++ ++N + S F D+ V I
Sbjct: 361 FIRPEAVQTIIGFLNQTNCKIIFVSSTNTGKASTSFLYNLKGAADE------LLNVVTYI 414
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
E + A S + FI ++ PD + I+G
Sbjct: 415 CDEHMERVKAHTNATS--------CSCYILNKPVFITMDGAMRNTAELFLPDSFMQEIIG 466
Query: 322 CD-IAEEGGDNTVV--VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD-AIIIDAN 377
I+ D V + ++ + D+ + L P A+
Sbjct: 467 GGNISGAHRDEPVFTKTAQDRFLLYRPSTVANQDIM-----SNNLYVYVDPAFTTNAMAS 521
Query: 378 NTGARTCDYLE 388
TG
Sbjct: 522 GTGVAVVGRYR 532
>gi|210632155|ref|ZP_03297229.1| hypothetical protein COLSTE_01123 [Collinsella stercoris DSM 13279]
gi|210159703|gb|EEA90674.1| hypothetical protein COLSTE_01123 [Collinsella stercoris DSM 13279]
Length = 561
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 29/251 (11%), Positives = 59/251 (23%), Gaps = 18/251 (7%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG K++ + ++ + PG + + L+ ++A+V + L +E
Sbjct: 163 KGGRGSLKSSWASIELVRHIEDNPGEHAAAVMKRKNSLRDAVYAQVVWAIHQLELDDEYE 222
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
M +L + + G +
Sbjct: 223 MPVSTLKIR-----------KKSTGQVIFFAGCDDPHKSKGLKPPFGFIGFLWFEECDQF 271
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT--RTVE- 259
+ + T NP R + D + D+
Sbjct: 272 KGMSELRTVRQSAARGGERAIVVYTYNPPRTRDNWANKEADRRRDAGQEVFDSCYTDAPP 331
Query: 260 -GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ F D R E G+ F + +E + + +
Sbjct: 332 EWLGAQFIADAEDLRQTDEQAYRHEYLGEPVGYGGQIF---DRVEFREVTDAEIASFERV 388
Query: 319 IMGCDIAEEGG 329
G D
Sbjct: 389 HAGQDFGWFPD 399
>gi|303239119|ref|ZP_07325649.1| Terminase [Acetivibrio cellulolyticus CD2]
gi|302593457|gb|EFL63175.1| Terminase [Acetivibrio cellulolyticus CD2]
Length = 522
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 36/299 (12%), Positives = 78/299 (26%), Gaps = 32/299 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLN--AWLVLWLMSTRPGISV 110
WQ + + + + + I + GK+ L L L PG V
Sbjct: 39 DWQEQIIRDIFGILKPNGYR---QFNTAYIEIPKKQGKSELAAAVALYLLCADFEPGAEV 95
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLP-NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A + Q + ++ + P + +Q+ + + +L D
Sbjct: 96 YGCAADKDQAR-IVFDVAMDMVKRCPHLFNKMSIQASLKTMNYVPTGSKYKALSAD---- 150
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA--------- 220
++ F H + G+ D + +T
Sbjct: 151 VANKHGFNTHGVI-FDELHTQPNRKLYEVMLQGSGDARMQPLYFLITTAGNNQNSICWEV 209
Query: 221 NRFWIMTSNPRRLSGKFY--EIFNKPLDDWKRFQIDTRTVEGI--------DPSFHEGII 270
++ + + R+ FY DDW ++ + + + E
Sbjct: 210 HQKALDIIDGRKHDSSFYPVIYGAAQEDDWSDPKVWKKANPSLGITVSMDKVKAAFESAR 269
Query: 271 ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ R Q+ +Q + + A +P G D++
Sbjct: 270 QNPAE-ENSFRQLRLNQWVKQAVRWMPMDKWDDCAFTVDPESLQGRVCYGGLDLSSSTD 327
>gi|261347084|ref|ZP_05974728.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
gi|282564814|gb|EFB70349.1| terminase, ATPase subunit [Providencia rustigianii DSM 4541]
Length = 119
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 9/106 (8%)
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAE--EGGDNTVVVL-------RRGPVIEHLF 346
I ++ P Y P+ +G D A+ + GD+ V+ I
Sbjct: 7 VDSWEIWDDVQPLMIRPYAYHPVWIGYDPAKGTQNGDSAGCVVIAPPMRKGDKFRILEHH 66
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
W D R ++ I L E+Y I ID+ G +
Sbjct: 67 QWRGMDFRAQSDAIKELTERYNVQYIGIDSTGIGHGVLQNVREFFP 112
>gi|323137496|ref|ZP_08072573.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC
49242]
gi|322397122|gb|EFX99646.1| hypothetical protein Met49242DRAFT_1961 [Methylocystis sp. ATCC
49242]
Length = 323
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 42/316 (13%), Positives = 79/316 (25%), Gaps = 39/316 (12%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFK 79
W VL G P+ +F V + P+ +
Sbjct: 17 WFPGASWDPWRVVLKA----AHGLPMTEAE------ADFFRSVAD-----RDPPSRRARE 61
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GR GK ++ + +V W + G E + L L +K
Sbjct: 62 LWAVCGRRAGKDSIASAIVTWSAAMFDG------------ADRLRPGERALCLCLACDKD 109
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE-RPDTFVGHHNTYGMAIIND 198
+ + + L + ++K + + F + + D
Sbjct: 110 QARIVLSYVRAYFAELEPLRAMVTRETKDGLELSNGVDIYVGVNDFRAVRGRTILCAVLD 169
Query: 199 EASGTPDVI--------NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW-K 249
E + D + + I S+P R +G + +
Sbjct: 170 EIAYWRDENSASPDLELYRALKPGMATL-PEAMLIGISSPYRRAGLLHAKHRQAYGRDGD 228
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNRE 309
I + I D R E +F F+ L++IE A++
Sbjct: 229 TLVIRAPSAVMNPTLDQAEIDQAMAEDPAAARAEWLAEFRDDISG-FLGLDLIEAAVDPT 287
Query: 310 PCPDPYAPLIMGCDIA 325
P +
Sbjct: 288 IVTRPPRGCYAPWIMK 303
>gi|56478561|ref|YP_160150.1| phage terminase large subunit [Aromatoleum aromaticum EbN1]
gi|56314604|emb|CAI09249.1| Phage terminase large subunit [Aromatoleum aromaticum EbN1]
Length = 501
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 53/485 (10%), Positives = 122/485 (25%), Gaps = 95/485 (19%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP---GISVICLAN 115
++ + +V + + +S GR GK+ L A L+L + ++ A
Sbjct: 29 LQPFQTAWVRAVYDNPVGTRRAILSVGRKNGKSALVAALILVHLVGPEAVQNSQLVSGAL 88
Query: 116 SETQLKTTLWAEVSKWLSLLPN-----------------------KHWFEMQSLSLHPAP 152
S Q + ++ +K + L P K + S +L +P
Sbjct: 89 SRDQA-SLVFKLAAKMVRLNPELAALVRIKDSTKELFGLPMGTHFKALAAVGSTALGLSP 147
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
+ + ++ + II+ +A+ D++++ I
Sbjct: 148 VFVLFDELGSVRGPRSEFAEALFSAQAAYENP-------LTFIISTQAASDADLLSIIID 200
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
++ + P+ + + F D R
Sbjct: 201 DAEKSQDPRVVCHVHQAPKDCTLDDEDAMRAANPAAGVF------SSFDDLKHSAEEAMR 254
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
R Q + + F+ ++ E + + G D++ +
Sbjct: 255 MPSAEPAHRNFRLNQRCE-VGNPFVSRSVWESCGAMPDSLE-GLEVWGGLDLSTRTDLTS 312
Query: 333 VVVLRRG----PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII-------IDANNTGA 381
+V+ R ++ F + + +R + +D
Sbjct: 313 LVLTGRDSSGIWHVKSFFWTPAEGIMDRARVDRVAYDLWRDQGFLRATPGKTVDYEYVAR 372
Query: 382 RTCDYLEMLGYHVYRVLGQKRAVDLEFCR-----------------------NRRTELHV 418
+ + L + + N EL
Sbjct: 373 DIAEICDGLDIKAIAFDPHRIDFLKKEFERIGCSVPLLMCHQGFNGVNPGICNLEAEL-- 430
Query: 419 KMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRV-----KGAKSTDYSDGLM 473
+ L ++ + + + G+ SKR G S L
Sbjct: 431 -LNKRLRHGMHP----VLTMAAAGAVTEINSEGQRRF-SKRKATARIDGIVS------LA 478
Query: 474 YTFAE 478
F+
Sbjct: 479 MCFSA 483
>gi|227534164|ref|ZP_03964213.1| large subunit terminase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|227188204|gb|EEI68271.1| large subunit terminase [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
Length = 432
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 39/356 (10%), Positives = 96/356 (26%), Gaps = 27/356 (7%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
++ + + N RG K+ A V+ + P ++ I L
Sbjct: 9 LDSIVPKAYAPLYNDRTRYLTY--KGSRGSRKSFSVAEDVIMQIILHPYVNWIVLRQYAY 66
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
K + ++ + + + L F+ L + G+D T + +
Sbjct: 67 TNKDSTYSTIQQAANRLGVYELFKFTLSPLEITFKPTGQKVFFRGMDKPLAVTSLQPTTG 126
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER-----NANRFWIMTSNPRRL 233
+ + + + I +
Sbjct: 127 VLARA-----------WWEEAYELKSLDAFKTVEETMRGEIDDPDGYYQSIITFNPWSDQ 175
Query: 234 SGKFYEIFNK--PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
E F++ K F +D + + + + RV V G +
Sbjct: 176 HWLKREFFDQDTKNPRSKSFTTTYEDNPYLDDDYIASLKDMVKRNPNRARVAVYGDWGIA 235
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV--VVLRRGPVIEHLFDWS 349
+ F + E+ + P +G D + + + + + +++D
Sbjct: 236 EGLVF--DGLFEQ-RDFSMEDIAALPKAVGLDFGFKHDPTAGEFMAIDQQNRVVYIYDEF 292
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+I+ + ++ + I A+ A L + + V + + D
Sbjct: 293 YKQ-GLLTGQIAKELASHKAYGLPIMADQAAANLIGELT-MAHGVPNIRAAGKGKD 346
>gi|213423578|ref|ZP_03356558.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 80
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 419 KMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
K D + L + + Q+ +++ + E+ R + A D + M+
Sbjct: 1 KAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATMHA 60
Query: 476 FAENPPRSDMD 486
P + +
Sbjct: 61 LFNEPLQGEAA 71
>gi|257468179|ref|ZP_05632275.1| putative terminase large subunit - phage associated protein
[Fusobacterium ulcerans ATCC 49185]
gi|317062464|ref|ZP_07926949.1| terminase large subunit G2p [Fusobacterium ulcerans ATCC 49185]
gi|313688140|gb|EFS24975.1| terminase large subunit G2p [Fusobacterium ulcerans ATCC 49185]
Length = 429
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 48/282 (17%), Positives = 84/282 (29%), Gaps = 20/282 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
+ + GRG K+T A L+L L I++IC + L+T+++ ++ K + LL
Sbjct: 19 LRYVLKGGRGSAKSTHIA-LMLVLTLISEPINIICFRKIKDNLETSVYEQIKKAIQLLGI 77
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS--------EERPDTFVGHHN 189
+ +F ++ L G+D + T + EE +
Sbjct: 78 EEFFVFKTSPLEIIYKERGNQFIFRGLDKAEKTKSIVTANFPIGAWWFEELAEFKNEKEV 137
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKPL 245
+ I E + +LG + + NP R + Y KP
Sbjct: 138 ETAIKSILRE--NLKEYEYTNMLGEKKIKKMKYRGFFSYNPPREKQHWVNQKYSFSTKPQ 195
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
+ + I F E A D R E G+ IP +
Sbjct: 196 NTF-VHHSTYLDNPYISTEFKEDAQATKEKDPTTYRGEFLGE---VVGQGIIPFPNLILR 251
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
+ + G D G D + +
Sbjct: 252 KITDQEIRSFDNFRNGIDWG-YGVDPVAFGRWHWDSMRRILY 292
>gi|322656963|gb|EFY53247.1| DNA packaging protein [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
Length = 96
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 419 KMADWLEFASLINH-SGLIQNLKSLKSFIVPNTGELAIESK----RVKGAKSTDYSDGLM 473
D ++ + S F++ G++A+ K + KS D D
Sbjct: 1 MARDAIKSGRMRIDSDPKTAEQASKIPFLLNEEGKMAMMRKEHMRQKLNIKSPDRWDTYC 60
Query: 474 YTFAENPPRSDMDFGRC 490
+T + ++ D G
Sbjct: 61 FTMLVDYVPANEDIGAE 77
>gi|1107479|emb|CAA62591.1| ORF5 [Streptomyces phage phiC31]
Length = 138
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG---IS 109
WQ E + ++ + + R GK+T+ A ++L+ + G
Sbjct: 51 PWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQ 110
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLP 136
+I AN Q + ++ + ++ P
Sbjct: 111 IIAAANDRNQAR-MVFDSAKQMVNASP 136
>gi|108760232|ref|YP_629471.1| hypothetical protein MXAN_1212 [Myxococcus xanthus DK 1622]
gi|108464112|gb|ABF89297.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
Length = 471
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 63/470 (13%), Positives = 119/470 (25%), Gaps = 78/470 (16%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98
G + + F ++E + +P + + AGRG GKT A V
Sbjct: 32 GSRAQLAKLFGGLDDKEVELLVYDLDFWARREQSPPDKFSTCFVMAGRGFGKTWCGARWV 91
Query: 99 L---WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
+ W + + ++ T+ S L+L P + +
Sbjct: 92 IKKAWQA----KSVGALIGPTAADVRDTMIRGASGILALSPPWFTPKYEPSKRRVT---- 143
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
D DE + + L
Sbjct: 144 --------------WPNGVYAICYSADKPDRLRGPNAGWGWGDEPASWKHDMAAVDQLPL 189
Query: 216 T----ERNANRFWIMTSNPR----RLSGKFYEIFNKPLDDWKRFQIDTRTVE--GIDPSF 265
R ++T PR F + L + + + PS
Sbjct: 190 VLRIGSREDPPQLLLTGTPRPLKKIEELLFANAETQELKPGVVLRTGSSLSNFANLAPSA 249
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI-PLNIIEEALNREPCPDPYAPLIMGCDI 324
+ A ++ + EV G+ + + I+ D
Sbjct: 250 VANMRAL--ANTRWGQQEVLGRLLFDVPGAIFGSAKWGRVEADAHEYAQQLDRRIVSVDP 307
Query: 325 ---AEEGGDNTVVVLRRGPVIEHLFDWSK---------------TDLRTTNNKISGLVEK 366
+E G D T +++ +G LF R +
Sbjct: 308 SPTSETGSDETGIIV-QGCKSSALFGADGVPLKRVSVLADLSRRASPREWATTAIRAYLE 366
Query: 367 YRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW--L 424
+ DA++++ N TG + L V + V +++R E +A+ +
Sbjct: 367 WGCDALVVEVN-TGGEMVETLISTVAGEMGVSVNVKPVRATSAKSKRAEPVSALAEAGRV 425
Query: 425 EFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
EF L L K + + D +D +
Sbjct: 426 EFVGTFP--KLEAQLS--KFTGINGRRD--------------DRADAFCW 457
>gi|163737525|ref|ZP_02144942.1| terminase, large subunit [Phaeobacter gallaeciensis BS107]
gi|161389051|gb|EDQ13403.1| terminase, large subunit [Phaeobacter gallaeciensis BS107]
Length = 587
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 35/290 (12%), Positives = 67/290 (23%), Gaps = 28/290 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGISV 110
WQ + + + R GK+TL A + L+ + PG V
Sbjct: 88 PWQAFMISQIGGWRHMVTG--LRRFRTAYVEVPRKNGKSTLLAGVGLYFLGPDGEPGAKV 145
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A S Q + + +++ D + + K +
Sbjct: 146 YSAAASTHQAR--------------IVFDAARVMAVTGEADGVGLDEVLGLTVEEHKIKT 191
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-VINLGILGFLTERNANRFWIMTSN 229
+ I DE + + L R +T+
Sbjct: 192 QDPAAVFQPIASQTKSKDGKNPHCAIVDELHEHDKRDVWDSMASALGAREQPLLIAITTA 251
Query: 230 PRRLSGKFYEIFNK-------PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
G +E + + F + EG +PS +
Sbjct: 252 GYNTGGICFEQRKYLQSLLDGDRKNERYFGLIFEADEGDEPSDPATWAKANPSLHTAKSL 311
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
E ++ S P + E + + D +
Sbjct: 312 EYMQDEWEKAAAS--PAAMGEFLRKHLDIWTSVGAAAIDMEAWRASEDAS 359
>gi|237737490|ref|ZP_04567971.1| phage terminase [Fusobacterium mortiferum ATCC 9817]
gi|229421352|gb|EEO36399.1| phage terminase [Fusobacterium mortiferum ATCC 9817]
Length = 447
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 38/340 (11%), Positives = 97/340 (28%), Gaps = 16/340 (4%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ GRG K+ A + + P +++ + + + +A++ + L H +
Sbjct: 35 VKGGRGSKKSYTTALWYITKLMELPESNLLVVRKVFDTHRGSTFAQLKTAMKRLKVYHLW 94
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYST-----MCRTYSEERPDTFVGHHNTYGMAII 196
+ + + + G+D T + + + + I
Sbjct: 95 KCTTSPMEMTYIPTGQKIIFRGLDDPLKITSITVDVGYLCWAWFEEMYQIENEDDFNKID 154
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWI---MTSNPRRLSGKFYEIF---NKPLDDWKR 250
P+ + I + W+ + +K D
Sbjct: 155 VSIRGAVPNHLFKQITCTF-NPWSETHWLNDRFFKGGKEDKDNLLTKGLAIHKNTKDILA 213
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ R E +D + + +E G + + F ++ +N
Sbjct: 214 ITTNFRANEFLDEADLNVFNLMKEENPRRFEIEGNGNWGICEGTVFYRWEVLNFDINTLI 273
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD-LRTTNNKISGLVEKYRP 369
Y +G D ++V + ++ + N I L++
Sbjct: 274 KTGKYLTC-IGLDYGFTNDPTALIVSLVNEDEKEIYIIDEHYQTGMFNEDIVELIKYKGY 332
Query: 370 DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+I A++ ++ +++ G V R+ + D
Sbjct: 333 SKSVIIADSAEEKSIKWMKKNG--VPRIKSSVKGPDSIMF 370
>gi|167039896|ref|YP_001662881.1| phage terminase [Thermoanaerobacter sp. X514]
gi|300915365|ref|ZP_07132679.1| Terminase [Thermoanaerobacter sp. X561]
gi|307724780|ref|YP_003904531.1| Terminase [Thermoanaerobacter sp. X513]
gi|166854136|gb|ABY92545.1| phage Terminase [Thermoanaerobacter sp. X514]
gi|300888641|gb|EFK83789.1| Terminase [Thermoanaerobacter sp. X561]
gi|307581841|gb|ADN55240.1| Terminase [Thermoanaerobacter sp. X513]
Length = 535
Score = 49.5 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 64/542 (11%), Positives = 132/542 (24%), Gaps = 85/542 (15%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLNSVNNPNPEV 77
+ + + F K T E + P WQ + + V + +
Sbjct: 18 DGSVYDKDAADIAVSFINCLKHTKGEWYGKPFELIDWQEQIIRDVFGIIKPNGYR---QF 74
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I + GK+ L A + L L G V A+ Q + ++ +
Sbjct: 75 NTAYIEIAKKQGKSELAAAVALLLTCGDFEHGGEVYGCASDRQQA-SIVFDVAVDMVEQC 133
Query: 136 PN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
P K + + L ++ + F H
Sbjct: 134 PALKARIKPVLSQKRLVYKPLGSFYQVLSAEA----YTKHGLNVHGV-VFDELHAQPNRQ 188
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---------- 244
+ + G+ D + +T + I ++ P
Sbjct: 189 LFDVMTHGSGDARKQPLYFLITTAGNDTHSICYEVHQKAKDILEGRKVDPTFYPVIYGAD 248
Query: 245 -LDDWKRFQIDTRTVEGID-PSFHEGI------IARYGLDSDVTRVEVCGQFPQQDIDSF 296
DDW ++ + + E I + + ++ R Q+ +Q +
Sbjct: 249 ENDDWTDPKVWAKANPSMGITVDIEKIYIACESAKQNPAEENLFRQLRLNQWVKQSVRWM 308
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG--------------------------- 329
+ A G D++
Sbjct: 309 PMEKWDKCAFTVNLESLTGRVCYGGLDLSSTTDITAFVLVFPPEYEGDKYIILPFFWIPE 368
Query: 330 ---------DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D+ + H + + N I L KY I D
Sbjct: 369 DNMDQRVKRDHVPYDVWEKQGFLHTTEGNVVHYGYIENFIEELGLKYNIREIAFDRWGA- 427
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLK 440
+ LE LG+ V + + + + + + + L +++ +
Sbjct: 428 VQMTQNLENLGFTVVPFGQGFKDMSPPT----KELMKLTLEEKLAHGGHP----VLRWMM 479
Query: 441 SLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQYEGVDL 500
G + + K + D + + + G + Y+G L
Sbjct: 480 DNIFIRTDPAGNIK--PDKEKSTERIDGAVATIMALDRAIRK-----GGTGNSVYDGRGL 532
Query: 501 LI 502
LI
Sbjct: 533 LI 534
>gi|319949764|ref|ZP_08023789.1| phage terminase [Dietzia cinnamea P4]
gi|319436564|gb|EFV91659.1| phage terminase [Dietzia cinnamea P4]
Length = 478
Score = 49.1 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 55/388 (14%), Positives = 97/388 (25%), Gaps = 70/388 (18%)
Query: 25 KLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA 84
F F + KG R WQ + + + V P
Sbjct: 13 SEQFVEFAR-RYLVTPKGQGARKPVQVRQWQRDLVGTLLDEERPLVVWCLP--------- 62
Query: 85 GRGIGKTTLNAWLVLWLMSTR--PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
RG GK+T+ A L L + G + +A E L
Sbjct: 63 -RGQGKSTITAALALHHVFMSGIEGARAVIVAQDERSATRML------------------ 103
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
S + ++ + + ++ P I DE
Sbjct: 104 --STAARMVALNEELDSRAWVYKDRITIPGTDSHIVALPGEAARIEGEAASLAICDEVGI 161
Query: 203 TPDVINLGIL-GFLTERNANRFWIMTSNPR--RLSGKFYE---IFNKPLDDWKRFQIDTR 256
+L + I T +P R + + D+ ++
Sbjct: 162 VRRDAFESLLHSTGKVEGSKLLAIGTPSPPSWRETSPLLDLVLDGRSNPDNPNLRVVEYS 221
Query: 257 TVEGIDPSFHEGII-ARYGLD-----------------SDVTRVEVCGQFPQQDIDSFIP 298
G E A GLD R GQ+ +QD +F+P
Sbjct: 222 APVGCAVDDEEAWAVANPGLDDLVQRSALRAALPPRSRESEFRRARLGQWVEQDDAAFLP 281
Query: 299 LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV-----IEHLFDWSKTD- 352
+ L+ +++ D GD T +V+ + L++ D
Sbjct: 282 PGLW-PKLSTGVGIPDGQRVVLALD-GSFNGDATALVVATVDKHPHLDVAGLWEPPDGDE 339
Query: 353 -----LRTTNNKISGLVEKYRPDAIIID 375
+ I ++ + D
Sbjct: 340 AWRVPILEVEQTIRDACRRWDVVEVTAD 367
>gi|213692678|ref|YP_002323264.1| phage Terminase [Bifidobacterium longum subsp. infantis ATCC 15697]
gi|213524139|gb|ACJ52886.1| phage Terminase [Bifidobacterium longum subsp. infantis ATCC 15697]
Length = 467
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 43/335 (12%), Positives = 98/335 (29%), Gaps = 20/335 (5%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + ++ + + +I R +GKT V L + +P + V+
Sbjct: 28 DLWQQGLLYLMLGKREDGLYACGEGGTVISI--CRQVGKTFTIGSAVFLLCAMQPNLKVL 85
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ T + + L H ++ + + + G +
Sbjct: 86 WTAHRTRTSDETFQSMCGFAKNKLMAGHVEHIRRANGQQEIAFRNGSRVMFGAREQ---G 142
Query: 172 MCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVINLGILGF--------LTERNANR 222
R + + F A+ + +G T + R
Sbjct: 143 FGRGFDAVDVEIFDEAQILTVKALNDMIPATNVSPNPLIVFMGTPPQPGDPSETFADKRR 202
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
+ ++ + P D + + + + + + G D + R
Sbjct: 203 DGLKHTDGMLYVEFSADPDCDPDDREQWAKANPSFPKRTSETAILRMRKLLGDDDN-FRR 261
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV-VVLRR--G 339
E G + ++ S I E PD L G D+ + + + +R G
Sbjct: 262 EGLGIWDGENSISAIDPQQWE--AGNIDQPDLDGRLAFGLDMPPDRSALAIGMAVRHDDG 319
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ +L ++ T + L E++ + ++
Sbjct: 320 TALINLQEYRDAKQSGTAWAVDWLAERWPKTSAVV 354
>gi|212219550|ref|YP_002306337.1| DNA-dependent helicase II [Coxiella burnetii CbuK_Q154]
gi|212013812|gb|ACJ21192.1| DNA helicase II [Coxiella burnetii CbuK_Q154]
Length = 723
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 67/398 (16%), Positives = 111/398 (27%), Gaps = 56/398 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
LE + P Q E + H + AG G GKT + + WL+
Sbjct: 10 LESLNPP---QKEAVTSPFDH--------------VLVLAGAGSGKTRVLTHRIAWLIQQ 52
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
+ LA + T + + S+L A W + +
Sbjct: 53 KNVSPYSILAVTFTN--KAAYEMRGRIESML----------GMPMGAMWVGTFHGLAHRL 100
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGM-AIINDEASGTPDVINLGILGFLTERNANRF 223
H+ S + DT + M +N E S P + E
Sbjct: 101 LRAHWKDAGLPQSFQILDTDDQYRLIRRMQRNLNLEESQWPPKQTQWFINKQKEEGRRSH 160
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ F E K +K ++ R +D + DS R
Sbjct: 161 QVL----DSDGSYFTETLVKV---YKAYEDVCRQSGLVDFAELLLRTLELLRDSATLREH 213
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
+F +D F N I+ A + M D+ + RG IE
Sbjct: 214 YQQRFQHILVDEFQDTNTIQYAW--LKALAGEQTVFMAVG-----DDDQSIYSWRGAKIE 266
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH--VYRVLGQK 401
++ +S+ K L + YR I+DA N D + +
Sbjct: 267 NIHHFSR---DFAGVKTIRLEQNYRSTQTILDAAN---AVIDNNKNRFGKKLWTDSRTGE 320
Query: 402 RAVDLEFCRNRRTELHVKMA---DWLEFASLINHSGLI 436
N R E ++ W+ N ++
Sbjct: 321 PITLYTAF-NERDEAFYVISCIDAWVRQGHSYNDVAIL 357
>gi|209363587|ref|YP_002268005.1| terminase large subunit [Staphylococcus phage phi2958PVL]
gi|208973088|dbj|BAG74404.1| terminase large subunit [Staphylococcus phage phi2958PVL]
Length = 453
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 33/271 (12%), Positives = 62/271 (22%), Gaps = 27/271 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLP------ 136
GR GKTT + + + +S G + LAN Q + L+ E + P
Sbjct: 2 GRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASPKLDKNF 60
Query: 137 --NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDTFVGHHNT 190
+ + P SD + + +
Sbjct: 61 RTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQ 120
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF----YEIFNKPLD 246
+ I + + R +
Sbjct: 121 PLLIYITTAGYQLDGPLVDMVEA------GRDTLDQIIEDERTFYYLASLDDDDDINDSS 174
Query: 247 DWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
+W + + +D E R + + F D SFI +++
Sbjct: 175 NWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKN 234
Query: 306 LNR-EPCPDPYAPLIMGCDIAEEGGDNTVVV 335
P +G D++E
Sbjct: 235 NEIVSLEELEGRPCTIGYDLSETEDFTAACA 265
>gi|320458831|dbj|BAJ69452.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 478
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 43/335 (12%), Positives = 98/335 (29%), Gaps = 20/335 (5%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + ++ + + +I R +GKT V L + +P + V+
Sbjct: 39 DLWQQGLLYLMLGKREDGLYACGEGGTVISI--CRQVGKTFTIGSAVFLLCAMQPNLKVL 96
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ T + + L H ++ + + + G +
Sbjct: 97 WTAHRTRTSDETFQSMCGFAKNKLMAGHVEHIRRANGQQEIAFRNGSRVMFGAREQ---G 153
Query: 172 MCRTYSEERPDTFVGHHNTYG-MAIINDEASGTPDVINLGILGF--------LTERNANR 222
R + + F A+ + +G T + R
Sbjct: 154 FGRGFDAVDVEIFDEAQILTVKALNDMIPATNVSPNPLIVFMGTPPQPGDPSETFADKRR 213
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRV 282
+ ++ + P D + + + + + + G D + R
Sbjct: 214 DGLKHTDGMLYVEFSADPDCDPDDREQWAKANPSFPKRTSETAILRMRKLLGDDDN-FRR 272
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV-VVLRR--G 339
E G + ++ S I E PD L G D+ + + + +R G
Sbjct: 273 EGLGIWDGENSISAIDPQQWE--AGNIDQPDLDGRLAFGLDMPPDRSALAIGMAVRHDDG 330
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ +L ++ T + L E++ + ++
Sbjct: 331 TALINLQEYRDAKQSGTAWAVDWLAERWPKTSAVV 365
>gi|161829860|ref|YP_001595927.1| DNA-dependent helicase II [Coxiella burnetii RSA 331]
gi|161761727|gb|ABX77369.1| DNA helicase II [Coxiella burnetii RSA 331]
Length = 720
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 67/398 (16%), Positives = 111/398 (27%), Gaps = 56/398 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
LE + P Q E + H + AG G GKT + + WL+
Sbjct: 7 LESLNPP---QKEAVTSPFDH--------------VLVLAGAGSGKTRVLTHRIAWLIQQ 49
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
+ LA + T + + S+L A W + +
Sbjct: 50 KNVSPYSILAVTFTN--KAAYEMRGRIESML----------GMPMGAMWVGTFHGLAHRL 97
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGM-AIINDEASGTPDVINLGILGFLTERNANRF 223
H+ S + DT + M +N E S P + E
Sbjct: 98 LRAHWKDAGLPQSFQILDTDDQYRLIRRMQRNLNLEESQWPPKQTQWFINKQKEEGRRSH 157
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ F E K +K ++ R +D + DS R
Sbjct: 158 QVL----DSDGSYFTETLVKV---YKAYEDVCRQSGLVDFAELLLRTLELLRDSATLREH 210
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
+F +D F N I+ A + M D+ + RG IE
Sbjct: 211 YQQRFQHILVDEFQDTNTIQYAW--LKALAGEQTVFMAVG-----DDDQSIYSWRGAKIE 263
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH--VYRVLGQK 401
++ +S+ K L + YR I+DA N D + +
Sbjct: 264 NIHHFSR---DFAGVKTIRLEQNYRSTQTILDAAN---AVIDNNKNRFGKKLWTDSPTGE 317
Query: 402 RAVDLEFCRNRRTELHVKMA---DWLEFASLINHSGLI 436
N R E ++ W+ N ++
Sbjct: 318 PITLYTAF-NERDEAFYVISCIDAWVRQGHSYNDVAIL 354
>gi|153206879|ref|ZP_01945697.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177']
gi|165918247|ref|ZP_02218333.1| DNA helicase II [Coxiella burnetii RSA 334]
gi|120576952|gb|EAX33576.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177']
gi|165918107|gb|EDR36711.1| DNA helicase II [Coxiella burnetii RSA 334]
Length = 720
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 67/398 (16%), Positives = 111/398 (27%), Gaps = 56/398 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
LE + P Q E + H + AG G GKT + + WL+
Sbjct: 7 LESLNPP---QKEAVTSPFDH--------------VLVLAGAGSGKTRVLTHRIAWLIQQ 49
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
+ LA + T + + S+L A W + +
Sbjct: 50 KNVSPYSILAVTFTN--KAAYEMRGRIESML----------GMPMGAMWVGTFHGLAHRL 97
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGM-AIINDEASGTPDVINLGILGFLTERNANRF 223
H+ S + DT + M +N E S P + E
Sbjct: 98 LRAHWKDAGLPQSFQILDTDDQYRLIRRMQRNLNLEESQWPPKQTQWFINKQKEEGRRSH 157
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ F E K +K ++ R +D + DS R
Sbjct: 158 QVL----DSDGSYFTETLVKV---YKAYEDVCRQSGLVDFAELLLRTLELLRDSATLREH 210
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
+F +D F N I+ A + M D+ + RG IE
Sbjct: 211 YQQRFQHILVDEFQDTNTIQYAW--LKALAGEQTVFMAVG-----DDDQSIYSWRGAKIE 263
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH--VYRVLGQK 401
++ +S+ K L + YR I+DA N D + +
Sbjct: 264 NIHHFSR---DFAGVKTIRLEQNYRSTQTILDAAN---AVIDNNKNRFGKKLWTDSRTGE 317
Query: 402 RAVDLEFCRNRRTELHVKMA---DWLEFASLINHSGLI 436
N R E ++ W+ N ++
Sbjct: 318 PITLYTAF-NERDEAFYVISCIDAWVRQGHSYNDVAIL 354
>gi|212213503|ref|YP_002304439.1| DNA-dependent helicase II [Coxiella burnetii CbuG_Q212]
gi|215919328|ref|NP_821025.2| DNA-dependent helicase II [Coxiella burnetii RSA 493]
gi|206584213|gb|AAO91539.2| DNA helicase II [Coxiella burnetii RSA 493]
gi|212011913|gb|ACJ19294.1| DNA helicase II [Coxiella burnetii CbuG_Q212]
Length = 723
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 67/398 (16%), Positives = 111/398 (27%), Gaps = 56/398 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
LE + P Q E + H + AG G GKT + + WL+
Sbjct: 10 LESLNPP---QKEAVTSPFDH--------------VLVLAGAGSGKTRVLTHRIAWLIQQ 52
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
+ LA + T + + S+L A W + +
Sbjct: 53 KNVSPYSILAVTFTN--KAAYEMRGRIESML----------GMPMGAMWVGTFHGLAHRL 100
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGM-AIINDEASGTPDVINLGILGFLTERNANRF 223
H+ S + DT + M +N E S P + E
Sbjct: 101 LRAHWKDAGLPQSFQILDTDDQYRLIRRMQRNLNLEESQWPPKQTQWFINKQKEEGRRSH 160
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ F E K +K ++ R +D + DS R
Sbjct: 161 QVL----DSDGSYFTETLVKV---YKAYEDVCRQSGLVDFAELLLRTLELLRDSATLREH 213
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
+F +D F N I+ A + M D+ + RG IE
Sbjct: 214 YQQRFQHILVDEFQDTNTIQYAW--LKALAGEQTVFMAVG-----DDDQSIYSWRGAKIE 266
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH--VYRVLGQK 401
++ +S+ K L + YR I+DA N D + +
Sbjct: 267 NIHHFSR---DFAGVKTIRLEQNYRSTQTILDAAN---AVIDNNKNRFGKKLWTDSRTGE 320
Query: 402 RAVDLEFCRNRRTELHVKMA---DWLEFASLINHSGLI 436
N R E ++ W+ N ++
Sbjct: 321 PITLYTAF-NERDEAFYVISCIDAWVRQGHSYNDVAIL 357
>gi|209364296|ref|YP_001425453.2| DNA-dependent helicase II [Coxiella burnetii Dugway 5J108-111]
gi|207082229|gb|ABS78395.2| DNA helicase II [Coxiella burnetii Dugway 5J108-111]
Length = 723
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 67/398 (16%), Positives = 111/398 (27%), Gaps = 56/398 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
LE + P Q E + H + AG G GKT + + WL+
Sbjct: 10 LESLNPP---QKEAVTSPFDH--------------VLVLAGAGSGKTRVLTHRIAWLIQQ 52
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
+ LA + T + + S+L A W + +
Sbjct: 53 KNVSPYSILAVTFTN--KAAYEMRGRIESML----------GMPMGAMWVGTFHGLAHRL 100
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGM-AIINDEASGTPDVINLGILGFLTERNANRF 223
H+ S + DT + M +N E S P + E
Sbjct: 101 LRAHWKDAGLPQSFQILDTDDQYRLIRRMQRNLNLEESQWPPKQTQWFINKQKEEGRRSH 160
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ F E K +K ++ R +D + DS R
Sbjct: 161 QVL----DSDGSYFTETLVKV---YKAYEDVCRQSGLVDFAELLLRTLELLRDSATLREH 213
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
+F +D F N I+ A + M D+ + RG IE
Sbjct: 214 YQQRFQHILVDEFQDTNTIQYAW--LKALAGEQTVFMAVG-----DDDQSIYSWRGAKIE 266
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH--VYRVLGQK 401
++ +S+ K L + YR I+DA N D + +
Sbjct: 267 NIHHFSR---DFAGVKTIRLEQNYRSTQTILDAAN---AVIDNNKNRFGKKLWTDSRTGE 320
Query: 402 RAVDLEFCRNRRTELHVKMA---DWLEFASLINHSGLI 436
N R E ++ W+ N ++
Sbjct: 321 PITLYTAF-NERDEAFYVISCIDAWVRQGHSYNDVAIL 357
>gi|257063552|ref|YP_003143224.1| phage terminase-like protein, large subunit [Slackia
heliotrinireducens DSM 20476]
gi|256791205|gb|ACV21875.1| phage terminase-like protein, large subunit [Slackia
heliotrinireducens DSM 20476]
Length = 546
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 46/369 (12%), Positives = 93/369 (25%), Gaps = 47/369 (12%)
Query: 19 MWSDEIKLSFSNFVLHFF-----PWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
++ E F+ F W K LE WQ F+ +
Sbjct: 44 VFDVEKGNRPIEFMRRFCRHSKGEWAGKPLELEL------WQKAFVCALFGFVDKDTGER 97
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKW 131
IS R GK+TL A ++L+L++ PG V +A Q K ++ E +
Sbjct: 98 RFNEALLCIS--RKGGKSTLAAGILLYLLTADGEPGAEVYTVATKLDQAK-LIFDEAAHM 154
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ P + + Y + +
Sbjct: 155 VEQSPT-------------------LAKRIKKRRTDLYFAGQMSKMQPLGKNSNTLDGLN 195
Query: 192 GMAIINDEASGTPDVI-NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A+ DE G D + ++ R + T+ F +++
Sbjct: 196 ASAVCIDELHGITDRNLYEVMKQSMSTRRQPLLLMTTTAGFVRECIFDDMYEYAEK---V 252
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ + + + + + ++ D +E A N
Sbjct: 253 LNGVIEDERFLAVVYELDTVEEWKDEKAWYKANPSLGTVKKLDDL---RAKVERAKNSPN 309
Query: 311 CPD-----PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ + D + + DL T + + +
Sbjct: 310 DLNGILCKDFNVRNTSAGAWLTFDDLNNTATFDLSDFKGCWAIGGADLSITTDLTAATLL 369
Query: 366 KYRPDAIII 374
+R +
Sbjct: 370 MHRDGLFYV 378
>gi|290513013|ref|ZP_06552377.1| hypothetical protein HMPREF0485_04781 [Klebsiella sp. 1_1_55]
gi|289774626|gb|EFD82630.1| hypothetical protein HMPREF0485_04781 [Klebsiella sp. 1_1_55]
Length = 435
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 56/356 (15%), Positives = 92/356 (25%), Gaps = 41/356 (11%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
A AG G GKT + + P I+ A + Q++ + V +
Sbjct: 23 AYVAGFGSGKTWVGCGGICKGFWEFPKINQGYFAPTYPQIRDIFYPTVEEVAHD------ 76
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-- 198
+ + Y S E+PDT VG + D
Sbjct: 77 -------WGLKVKIVESNKEVHFYSGRQYRGTTICRSMEKPDTIVGFKIGNALVDELDVL 129
Query: 199 EASGTPDVINLGILGF-LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRF 251
+A I +T+ P + + + +
Sbjct: 130 KADKARQAWRKIIARMRYKVDGLRNGIDVTTTPEGFKFVYNQFVKAVREKPELRSMYGLV 189
Query: 252 QIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
Q T E + + ++A Y ++ + + GQF + I N
Sbjct: 190 QASTFDNEKNLPDDYIPSLLASY--PPELIKAYLNGQFTNLTSGT-IYHQFDRVLNNSSE 246
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL------- 363
P L +G D V VLR G + D I
Sbjct: 247 EEQPGEALYIGMDFNVGKMAGIVHVLRLGLPHAVTEIINAYDTPDMIRIIKERFWLYADG 306
Query: 364 -VEKYRPDAIIIDANNTGART-------CDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
K R I DA+ ++ + L G++V D N
Sbjct: 307 DYRKVREIYIYPDASGDSRKSNNASKTDIEQLRQAGFNVIVDDANPPVKDRINSMN 362
>gi|307564873|ref|ZP_07627398.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
gi|307346409|gb|EFN91721.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
Length = 697
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 37/324 (11%), Positives = 92/324 (28%), Gaps = 24/324 (7%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
+ + E K+ + + F+ + ++ + + G F R Q +F+E +
Sbjct: 78 AVEYSEEDRLKVIEQFVRLRCRYDFAFWAAMYVYIKNKGGGDDVLFRLTRP-QRKFVERL 136
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-GISVICLANS---ET 118
+A + + + R G +T + + WL G++ + +A+
Sbjct: 137 EALRKANK------PIRIVLLKARQWGGSTTSQLYMAWLQLIHKVGLNSLIIAHQGAGSD 190
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP-WYSDVLHCSLGIDSKHYSTMCRTYS 177
++K + + + K +S +H + K
Sbjct: 191 EIKDMFDRMIKAYPISMLYKLGETYNENESKLVGVGHSGSIHRVPQRNCKIKIGTAERPD 250
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL-SGK 236
R + H + + D++ G L + + T+N +
Sbjct: 251 SCRGGDYNLVHLSEVGLWKTTDGKKPEDIVRSACSGVLLKPYTMIVYESTANGTGNFFQR 310
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
Y+ + ++ + +E F D+D + + + ++
Sbjct: 311 EYDAAKRGTSQFEAMFVSWFDIEQYSLPF----------DNDDEKADFAIWLWKNKNNTT 360
Query: 297 IPLNIIEEALNREPCPDPYAPLIM 320
E A L
Sbjct: 361 PSSARAESGRYLWWLWQKGATLEA 384
>gi|257088841|ref|ZP_05583202.1| predicted protein [Enterococcus faecalis CH188]
gi|256997653|gb|EEU84173.1| predicted protein [Enterococcus faecalis CH188]
gi|315160590|gb|EFU04607.1| phage uncharacterized protein [Enterococcus faecalis TX0645]
gi|315579436|gb|EFU91627.1| phage uncharacterized protein [Enterococcus faecalis TX0630]
Length = 418
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 46/361 (12%), Positives = 94/361 (26%), Gaps = 30/361 (8%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG KTT A + LM P ++I L ++T + + S F + +
Sbjct: 52 RGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDVVEIILQVAKVLSSKYFKTLVFALYN 111
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ L + + +L S+ T + + +I D+ D
Sbjct: 112 VELVLLKETTTEIDTNLKTSSRG------TSQLLGMGIYASLTGKHADIVITDDIVNIKD 165
Query: 206 VINLGILGFLTERNANRFWIMTSNPR-RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
++ + + R +G + + + D ID
Sbjct: 166 RVSRAEREKTKLQYQELQNVKNRAGRFINTGTPWHKEDAISKMPNVKKFDCYETGLIDKE 225
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
+ + + + F + N + + D
Sbjct: 226 QRKALQQSM--TPSLFAANYELKHIADSESLFTAPTYTD---NTNLIYNG----VAHIDA 276
Query: 325 AEEGGDNTVVVLR---RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA 381
A G D+T + + I + + +I L + Y+ + N
Sbjct: 277 AYGGDDSTAFTIFKEQKDGTIIGFGKKWQKHVDDCIPEILQLHQHYQAGTFYNETNGDKG 336
Query: 382 RTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL--HVKMADWLEFASLINHSGLIQNL 439
+L G +V + + L + WLE I +
Sbjct: 337 YLAKHLIERGQYVQKYH-----EKTNKFIKISSYLRKYWSQIIWLED----TDKEYIAEI 387
Query: 440 K 440
Sbjct: 388 L 388
>gi|167034415|ref|YP_001669646.1| hypothetical protein PputGB1_3419 [Pseudomonas putida GB-1]
gi|166860903|gb|ABY99310.1| protein of unknown function DUF264 [Pseudomonas putida GB-1]
Length = 433
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 53/430 (12%), Positives = 106/430 (24%), Gaps = 59/430 (13%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
AG G GKT + + + P I A + Q++ + + + W
Sbjct: 22 VAGFGSGKTWVGCAALCKHVWEWPRIDSGYFAPTYPQIRDIFFPTIEEV-----AFDWGL 76
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ Y + S E+P T VG + + D
Sbjct: 77 KVKTK--------ESDKEVEFYSGGQYRSTTICRSMEKPQTIVGFKIGHALVDELDVLPA 128
Query: 203 TPDVI-NLGILGFLT--ERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------WKRFQI 253
I+ + +T+ P + + + + + Q
Sbjct: 129 LKAEHAWRKIIARMRYNVPGLKNGVDVTTTPEGFKFVYQQFVKQLREKPALQGMYGLVQA 188
Query: 254 DTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
T E + P + ++ Y + + + GQF + S I + +
Sbjct: 189 STFDNELNLPPDYIPSLMESY--PAQLILAYLNGQFVNLNAGS-IYHAYDRKLNSCFDTV 245
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD-WSKTDLRTTNNKISGLVEKYRPD- 370
+P PL +G D V R + + D +I ++
Sbjct: 246 EPGEPLFIGMDFNVGKMAAITHVKRADGKPRAVDELIDGFDTPDMIRRIKERYWRHNGRD 305
Query: 371 -------AIIIDANNTGARTCDY-------LEMLGYHVYRVLGQKRAVDLEFCRNRRTEL 416
I DA+ ++ + L G+ V D N +
Sbjct: 306 YEKTCEIRIYPDASGGSRKSVNASETDIAILRQAGFAVIAPDANPPVKDRINAMN---AM 362
Query: 417 HVKM----ADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
+ + + + E + G + + G
Sbjct: 363 FCNANGERRYLINPLRCP----TYADGLEQQVWAPNG------EPDKKSGVDHANDAGGY 412
Query: 473 MYTFAENPPR 482
R
Sbjct: 413 FIHHDYPISR 422
>gi|157325367|ref|YP_001468786.1| TerL [Listeria phage P35]
gi|66733372|gb|AAY53187.1| TerL [Listeria phage P35]
Length = 440
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 46/357 (12%), Positives = 96/357 (26%), Gaps = 23/357 (6%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ H + N + GRG GK++ A +V+ + P + + +
Sbjct: 25 LMSPAFHNIYQRVLDNTAPSHVWMKGGRGSGKSSFVALMVVDEIMKDPQANAVIFRKVDE 84
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR-TYS 177
++TTL + +W SL + + I K R S
Sbjct: 85 GMRTTLLPQ-YQWAIDQLGVSGAWRTSLQPMMLLYKNPETGLEQQIRFKGVKDPKRVKAS 143
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP------R 231
+ R ++E + + G ++ F++
Sbjct: 144 KFRVGYAKYLIYEEADEYESEEDFSIVNSSYMRGEGT---GDSRAFYLYNPPKYKGHWLN 200
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ ++ + I E + ++ E + + E G+
Sbjct: 201 NWVDVIRDEPSQYVHHSTFIPIALHHPEWLGSTWLESARLVRDKNPNRYEWEFLGRNVNT 260
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL-----RRGPVIEHLF 346
+ F P + E D P G D + + + R I
Sbjct: 261 GNEVF-PNAVQEH--ITFDMIDGLRPYE-GFDEGYTADPSVWLRVFYDEQRDTVYITDEL 316
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
+ + I + E I+ ++ R D + LG + V +
Sbjct: 317 VMKRYKTKALAKDILNVQE---GSYNIVRGDSANPRVLDEMRDLGVNALAVSKSPNS 370
>gi|237814043|ref|YP_002898494.1| terminase, large subunit [Burkholderia pseudomallei MSHR346]
gi|251767472|ref|ZP_02267409.2| terminase, large subunit [Burkholderia mallei PRL-20]
gi|254201288|ref|ZP_04907652.1| terminase, large subunit [Burkholderia mallei FMH]
gi|254206630|ref|ZP_04912981.1| terminase, large subunit [Burkholderia mallei JHU]
gi|147747182|gb|EDK54258.1| terminase, large subunit [Burkholderia mallei FMH]
gi|147752172|gb|EDK59238.1| terminase, large subunit [Burkholderia mallei JHU]
gi|237505236|gb|ACQ97554.1| terminase, large subunit [Burkholderia pseudomallei MSHR346]
gi|243062625|gb|EES44811.1| terminase, large subunit [Burkholderia mallei PRL-20]
Length = 165
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 3/101 (2%)
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELA 454
AV L + +T L +K + L + L ++K + + +
Sbjct: 64 KFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGRQAT 123
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ R D + ++ P + Y
Sbjct: 124 YTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 164
>gi|254180437|ref|ZP_04887035.1| putative terminase, ATPase subunit [Burkholderia pseudomallei 1655]
gi|254357255|ref|ZP_04973529.1| terminase, large subunit [Burkholderia mallei 2002721280]
gi|148026319|gb|EDK84404.1| terminase, large subunit [Burkholderia mallei 2002721280]
gi|184210976|gb|EDU08019.1| putative terminase, ATPase subunit [Burkholderia pseudomallei 1655]
Length = 110
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 3/101 (2%)
Query: 398 LGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS---GLIQNLKSLKSFIVPNTGELA 454
AV L + +T L +K + L + L ++K + + +
Sbjct: 9 KFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGRQAT 68
Query: 455 IESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPSYQY 495
+ R D + ++ P + Y
Sbjct: 69 YTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFY 109
>gi|254418881|ref|ZP_05032605.1| conserved hypothetical protein [Brevundimonas sp. BAL3]
gi|196185058|gb|EDX80034.1| conserved hypothetical protein [Brevundimonas sp. BAL3]
Length = 356
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 40/320 (12%), Positives = 80/320 (25%), Gaps = 35/320 (10%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG GKT + + L +++ + + ++ + S +L
Sbjct: 3 GGRGSGKTFAGSVWIDTLARKSK-VNLALVGPALHDVREVMVEGASGIKALAEPGDRPRW 61
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
++ + A DE
Sbjct: 62 EAGRRRLL------------------WKNGSAAYAFSAEDPDSLRGPQFHAAWADEFCVW 103
Query: 204 PDVINLGILGFLTER---NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
+L L A +T+ PR + + + +
Sbjct: 104 RK--PEAVLSNLRFGLRLGAAPRLAVTTTPRPIPALRRLMAEAGTRVDRA--ATALNAKN 159
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
+ P F + YG + + E+ GQ + + + ++ A R P +I+
Sbjct: 160 LSPGFLAHLSDVYG-GTRLAAQELEGQ-VVEGEGALFGVEDLKRA--RGSRPAELDRVIV 215
Query: 321 GCD-IAEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
D A GD +V+ R I + + + +
Sbjct: 216 AVDPPASAHGDACGIVVAGRKDRRAFILADRTVRGLSPGGWAAAVCRAARDFDAQEVAAE 275
Query: 376 ANNTGARTCDYLEMLGYHVY 395
AN G + L
Sbjct: 276 ANQGGEMVRNVLRQADCPAP 295
>gi|51557524|ref|YP_068358.1| DNA packaging terminase subunit 1 [Suid herpesvirus 1]
gi|40253983|tpg|DAA02178.1| TPA_exp: UL15 protein [Suid herpesvirus 1]
Length = 735
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 44/335 (13%), Positives = 81/335 (24%), Gaps = 43/335 (12%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ L S + + + R GKT L+ ++T GI V A+
Sbjct: 246 LLAAFDTPLFSEDAVRHFRQRVTVFLVPRRHGKTWFLVPLIALALATFRGIRVGYTAHIR 305
Query: 118 TQ---LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ + A + +W H P S
Sbjct: 306 KATEPVFEEIHARLRRWCRDARVDHVKGENITVTFPDGARS------------------- 346
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
T G + DEA+ ILGF+ + + ++ ++N +
Sbjct: 347 TIVFASSHNTNGIRGQDFNLLFVDEANFIRPDAVQTILGFMNQASCKIIFVSSTN-TGKA 405
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ + D E + +
Sbjct: 406 STSFLTNLRGTDMLNVVTYVCD----------EHMRRVVAHTDAT-----ACSCYVLNKP 450
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR 354
FI ++ PD + I+G +A + V+ G S + R
Sbjct: 451 VFITMDAATRTTAERLLPDSFMQEILGGAVA--AREAPVLTRAAGERFLLYRPSSVANRR 508
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ V+ A+ TG
Sbjct: 509 LLAGTLHVYVDPAFTANAR--ASGTGVAVVGSYRR 541
>gi|50313286|ref|YP_053090.1| DNA packaging terminase subunit 1 [Equid herpesvirus 1]
gi|139648|sp|P28969|TRM3_EHV1B RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein 44; AltName: Full=Terminase
large subunit
gi|59798996|sp|P84396|TRM3_EHV1V RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein 44; AltName: Full=Terminase
large subunit
gi|42795172|gb|AAS45929.1| putative terminase [Equid herpesvirus 1]
gi|49617029|gb|AAT67302.1| DNA packaging protein [Equid herpesvirus 1]
Length = 734
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 49/328 (14%), Positives = 82/328 (25%), Gaps = 45/328 (13%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ---LKTTLWAEVSKWLSLLPNKHWF 141
R GKT L+ ++T GI + A+ + + A + +W P H
Sbjct: 260 PRRHGKTWFLVPLIALALATFKGIKIGYTAHIRKATEPVFDEIGARLRQWFGNSPVDHVK 319
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
P T G + DEA+
Sbjct: 320 GENISFSFPDG-------------------SKSTIVFASSHNTNGIRGQDFNLLFVDEAN 360
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
I+GFL + N ++ ++N + S F DD V I
Sbjct: 361 FIRPEAVQTIIGFLNQTNCKIIFVSSTNTGKASTSFLYNLKGAADD------LLNVVTYI 414
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
E + A + FI ++ PD + I+G
Sbjct: 415 CDEHMERVKAHTNAT--------ACSCYILNKPVFITMDGAMRNTAELFLPDSFMQEIIG 466
Query: 322 CD-IAEEGGDNTVV--VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD-AIIIDAN 377
++ D V + ++ + D+ S L P A+
Sbjct: 467 GGNVSGAHRDEPVFTKTAQDRFLLYRPSTVANQDIM-----SSDLYVYVDPAFTTNAMAS 521
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVD 405
TG A+
Sbjct: 522 GTGVAVVGRYRSNWVVFGMEHFFLSALT 549
>gi|239622569|ref|ZP_04665600.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239514566|gb|EEQ54433.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 487
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 41/361 (11%), Positives = 79/361 (21%), Gaps = 39/361 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + ++V+ S + + R GKTT+ + P
Sbjct: 41 PWQRQVIDVISE-IDPSTGTYWYDELVLTVQ--RQAGKTTITKSYDVRNSLWGPDRKTWY 97
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
LA + + + K + + LS + +
Sbjct: 98 LAQTGKDANDQ-FRDFVKSWRKSRLRKLAKPPRLSNGSMALEFKNGSQLRPGGATEAAGH 156
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
D +A D L TS
Sbjct: 157 GVQGDLINVDEVWSLSKQ--------QAKNLKDGFIPTTTTRLKLTGVRPQIWWTSTEGN 208
Query: 233 LSGKFYEIF-----------------------NKPLDDWKRFQIDTRTVEGIDPSFHEGI 269
S +++ P D ++ D G
Sbjct: 209 ASSEYFNDRLDRLRAGDIPDRTAFFDFGIPFDADPEDLETIWRYHPGAGYLFDFDQLAGF 268
Query: 270 IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AE 326
++ D++ D I + + ++ P+ + G + A
Sbjct: 269 RRQFDDDAEGWARAFGNIRDAGSTDRAIDSLLWADTMDEPVTPEHGMRVCFGVGVPLDAT 328
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
+ + G + ++ L YR + ID A D
Sbjct: 329 HTVIAACIGVGGGLPPLVQIVDDLPGTGESPARLLALQNDYR-APVCIDPRGPSAALADV 387
Query: 387 L 387
L
Sbjct: 388 L 388
>gi|281416465|ref|YP_003347385.1| terminase large subunit [Enterococcus phage phiFL4A]
gi|270209641|gb|ACZ64180.1| terminase large subunit [Enterococcus phage phiFL4A]
Length = 418
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 49/362 (13%), Positives = 97/362 (26%), Gaps = 32/362 (8%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG KTT A + LM P ++I L ++T + + S F +
Sbjct: 52 RGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDVVEIILQVAKVLSSKYFKTLVFALYG 111
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ L + + +L S+ T + + +I D+ D
Sbjct: 112 VELVLLKETTTEIDTNLKTSSRG------TSQLLGMGIYASLTGKHADIVITDDIVNIKD 165
Query: 206 VINLGILGFLTERNANRFWIMTSNPR-RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
++ + + R +G + + + D ID
Sbjct: 166 RVSRAEREKTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKMPNVKKFDCYETGLIDKE 225
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
+ + + + F + N + + D
Sbjct: 226 QRKALQQAM--TPSLFAANYELKHIADSESLFTAPTYTD---NTNLIYNG----VAHIDA 276
Query: 325 AEEGGDNTVVVL----RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
A G D+T + + G +I + W K + +I L + Y+ + N
Sbjct: 277 AYGGDDSTAFTIFKEQKDGTLIGYGKKWQKH-VDDCIPEILQLHQHYQAGTFYNETNGDK 335
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL--HVKMADWLEFASLINHSGLIQN 438
+L G +V + + L + WLE I
Sbjct: 336 GYLAKHLIERGQYVQKYH-----EKTNKFIKISSYLRKYWSQIIWLED----TDKEYIAE 386
Query: 439 LK 440
+
Sbjct: 387 IL 388
>gi|160899533|ref|YP_001565115.1| PBSX family phage terminase large subunit [Delftia acidovorans
SPH-1]
gi|160365117|gb|ABX36730.1| phage terminase, large subunit, PBSX family [Delftia acidovorans
SPH-1]
Length = 414
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 34/303 (11%), Positives = 74/303 (24%), Gaps = 32/303 (10%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGI----SVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG KT A + ++ L + E+ + + +P
Sbjct: 27 GGRGSAKTRSFAMMTAVRAYMFAEAGVSGVILGAREYMNSLSESSMEEIKQAIRSVP--- 83
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
A + + Y ++ + + + DE
Sbjct: 84 --------WLDAYFEIGEQYIRTKNRRVSYVFAGLRHNLDSIKSKARI-----LIAWVDE 130
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-PLDDWKRFQIDTRTV 258
A +V + + E+ + + +T NP + + F K P + K +++
Sbjct: 131 AESVSEVAWQKLAPTVREQGSEIW--VTWNPEKDGSPTDKRFRKEPPPNSKVVELNYSDN 188
Query: 259 EGIDPSFHEGIIARYGL-DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA- 316
+ A D G + + + E P P
Sbjct: 189 PWFPEVLDQERQADRDRLDDQTYAWVWDGAYRENSDAQILSGKY----RVAEFEPQPGWD 244
Query: 317 PLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT---DLRTTNNKISGLVEKYRPDAII 373
G D V G + + + + + + +
Sbjct: 245 GPYFGLDWGFSQDPTAGVKCWVGDGRLWIEYEAGKVGLENDDIADYVIQRLPGIEQHTVR 304
Query: 374 IDA 376
D+
Sbjct: 305 ADS 307
>gi|329848487|ref|ZP_08263515.1| terminase, ATPase subunit [Asticcacaulis biprosthecum C19]
gi|328843550|gb|EGF93119.1| terminase, ATPase subunit [Asticcacaulis biprosthecum C19]
Length = 106
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 3/100 (3%)
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGE 452
V RA +++ + ++ + +K + + + L L S+ I E
Sbjct: 1 MVKFFVRARRIDYSVHVKSLMVLKAQNVFRNRRIEFDLGWTDLAAALMSIHPEITKGGRE 60
Query: 453 LAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFGRCPS 492
+ ++R D L+ P + +
Sbjct: 61 ITYVARRSAETGHGDIGWALLNCLYCEPLDAGEGGQKAKV 100
>gi|219846951|ref|YP_002333526.2| DNA packaging terminase subunit 1 [Equid herpesvirus 9]
gi|226423816|dbj|BAH02470.2| DNA packaging protein [Equid herpesvirus 9]
Length = 734
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 48/311 (15%), Positives = 80/311 (25%), Gaps = 45/311 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ---LKTTLWAEVSKWLSLLPNKHWF 141
R GKT L+ ++T GI + A+ + + A + +W P H
Sbjct: 260 PRRHGKTWFLVPLIALALATFKGIKIGYTAHIRKATEPVFDEIGARLRQWFGNSPVDHVK 319
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
P T G + DEA+
Sbjct: 320 GENISFSFPDG-------------------SKSTIVFASSHNTNGIRGQDFNLLFVDEAN 360
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
I+GFL + N ++ ++N + S F DD V I
Sbjct: 361 FIRPEAVQTIIGFLNQTNCKIIFVSSTNTGKASTSFLYNLKGAADD------LLNVVTYI 414
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
E + A + FI ++ PD + I+G
Sbjct: 415 CDEHMERVKAHTNAT--------ACSCYILNKPVFITMDGAMRNTAELFLPDSFMQEIIG 466
Query: 322 CD-IAEEGGDNTVV--VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD-AIIIDAN 377
++ D V + ++ + D+ S L P A+
Sbjct: 467 GGNVSGAHRDEPVFTKTAQDRFLLYRPSTVANQDIM-----SSDLYVYVDPAFTTNAMAS 521
Query: 378 NTGARTCDYLE 388
TG
Sbjct: 522 GTGVAVVGRYR 532
>gi|227534654|ref|ZP_03964703.1| terminase large subunit [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|227187701|gb|EEI67768.1| terminase large subunit [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
Length = 629
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 49/421 (11%), Positives = 115/421 (27%), Gaps = 62/421 (14%)
Query: 27 SFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGR 86
N + +F P WQ ++ + IS R
Sbjct: 79 DMVNAIEYFSRLLPNPDDTSKKIQPFKWQSFILDSLIGWRTLDNG---TRFTTSNISIAR 135
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
GKT L + L+ + + N+ +Q L A +
Sbjct: 136 QQGKTWLASILINFYYF-------VVCWNATSQ--DLLVASYDSEHATKLFNDVSLQAKT 186
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYST-MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
L + D + + + + G + + + DE
Sbjct: 187 ILSLPDFADDARERGVEAQTTQVIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNLRP 246
Query: 206 VINLGILGFLTERNA----NRFWIMTSNP----------------------RRLSGKFYE 239
+N + + +N I T+ P R F
Sbjct: 247 ALNETLKQITSGQNGIKNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQV 306
Query: 240 IFNKPLDD-------WKRFQIDTRTVEGIDPSFHEGIIARYGLDS------DVTRVEVCG 286
I+++ +D W + + + + + + D+ + +
Sbjct: 307 IYSQDSEDEVFEPETWAKSNPNLLELPKSKRDNLQNALNQDRNDNEREGTLETFVNKSLN 366
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGPVI 342
+ ++ +S++ L+ I+ ++ + + +G D ++ + + + +
Sbjct: 367 LWSRRFQNSYLSLDNIQRSIIDHFDVN-GRDVFIGFDGSQTNDNTSFGFIYPYTDHDKHM 425
Query: 343 EHLFDWS-----KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
H+ S + +K GL DA +D N + + ++ + V V
Sbjct: 426 FHVQQHSFIPFAQAKTIEAKSKQDGLDYLKLQDAGFVDITNLASGVINTDQVYQWLVDYV 485
Query: 398 L 398
Sbjct: 486 N 486
>gi|48697260|ref|YP_025027.1| putative terminase large subunit [Lactobacillus phage phiAT3]
gi|47607151|gb|AAT36487.1| putative terminase large subunit [Lactobacillus phage phiAT3]
Length = 629
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 33/287 (11%), Positives = 72/287 (25%), Gaps = 18/287 (6%)
Query: 26 LSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAG 85
N + +F P WQ ++ + IS
Sbjct: 78 SDMVNAIEYFSRLLPNPDDTSKKIQPFKWQSFILDSLIGWRTIDNG---TRFTTSNISIA 134
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
R GKT L + L+ + + N+ +Q L A +
Sbjct: 135 RQQGKTWLASILINFYYF-------VVCWNATSQ--DLLVASYDSEHATKLFNDVSLQAK 185
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYST-MCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
L + D + + + + G + + + DE
Sbjct: 186 TILSLPDFADDARERGVEAQTTQVIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNLR 245
Query: 205 DVINLGILGFLTERNA-NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+N + + +N + + K ++ + R + +
Sbjct: 246 PALNETLKQITSGQNGIKNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNV-- 303
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ I A+ D P + +++ALN++
Sbjct: 304 --FQVIYAQDSEDEVFEPETWAKSNPNLLELQKSKRDNLQKALNQDR 348
>gi|119357402|ref|YP_912046.1| hypothetical protein Cpha266_1601 [Chlorobium phaeobacteroides DSM
266]
gi|119354751|gb|ABL65622.1| protein of unknown function DUF264 [Chlorobium phaeobacteroides DSM
266]
Length = 414
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 51/368 (13%), Positives = 102/368 (27%), Gaps = 46/368 (12%)
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWL 132
P K + G G GKT + A ++ + + ++ S Q + T+ + + L
Sbjct: 19 ELPNFLKVLV-GGYGCGKTHIGALRSIYDSYVNAPVPHLYVSPSYKQARKTVVISIRELL 77
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
++ F + A W + + D
Sbjct: 78 DAAGVRYRFNKTNHEFAIANW-----------NGTIWIASG--------DEPDSLKGPNI 118
Query: 193 -MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
A I++ +V ++ + R +R +T P +L+ +E+ +
Sbjct: 119 GSAGIDEPFIQQKEVFDITLSRVRHPRAKHREIFLTGTPEQLNWG-HEVSQNDEGRYDLG 177
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ RT + + + D + + G F + +
Sbjct: 178 LVVGRTADNVHLPGQFVSMLERAYDENQRAAYMNGLFVNLTVGRVYSYFDRSVHMGGAGL 237
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLR-RGPVIEHLFDW--SKTDLRTTNNKISGLVEKYR 368
A + I T VVLR G + + + ++ L E++
Sbjct: 238 GGDGADGEVVAGIDFNVDHLTAVVLRVWGDRVHCFDEMVLRGSTTYELADR---LYERFP 294
Query: 369 PDAIIIDANNTGARTCDY-------LEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ D + GAR L+ G+ V Q D +
Sbjct: 295 GIRVFPDPSG-GARRTSAPKTDVRILQDKGFRVEMRPKQPPVKDRVH----------AVQ 343
Query: 422 DWLEFASL 429
L L
Sbjct: 344 KLLREGRL 351
>gi|332799002|ref|YP_004460501.1| phage terminase, large subunit, PBSX family [Tepidanaerobacter sp.
Re1]
gi|332696737|gb|AEE91194.1| phage terminase, large subunit, PBSX family [Tepidanaerobacter sp.
Re1]
Length = 417
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 40/345 (11%), Positives = 85/345 (24%), Gaps = 20/345 (5%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
H N + K GRG K++ + ++ M A + ++K TL
Sbjct: 17 HVDIKKNKHTEYMLK----GGRGSTKSSFASLEIILGMMRDAEQREFTNAVALRKVKDTL 72
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
V + L+ W+ + + R + +
Sbjct: 73 KDSVFEQLAWAIEILGVGHL--------WHIPQSKLEITYIPTGQKILFRGADKPKKIKS 124
Query: 185 VGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
Y I +E P+ + + + + + P+ +
Sbjct: 125 TKVKKGYIKYIWFEELDEFYGPEELRIINQSLMRGGEIFVVFYTYNPPKSSRSWVNQEAK 184
Query: 243 KPLDDWKRFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
P K D R+V + F + R E G+ ++ F +
Sbjct: 185 TPKPGRKVHHSDYRSVPEHWLGNVFIADAEHLKKTNEIAYRHEYMGEEVGTGLEVFTNVT 244
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
+ E + + + G D D +
Sbjct: 245 LREI---TDEEIKTFDRIKQGLDFG-YAVDPVAFEKMHYDKTRRRLYLFYEFSGIQVSNR 300
Query: 361 SGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+ A++ ++ L+ G + +VD
Sbjct: 301 KLYNSIKPHTQKMTIADSAEPKSIAELKGYGVKIKGAKKGPDSVD 345
>gi|169334313|ref|ZP_02861506.1| hypothetical protein ANASTE_00711 [Anaerofustis stercorihominis DSM
17244]
gi|169259030|gb|EDS72996.1| hypothetical protein ANASTE_00711 [Anaerofustis stercorihominis DSM
17244]
Length = 488
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 25/241 (10%), Positives = 64/241 (26%), Gaps = 19/241 (7%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ V +++ + G G GK+ ++ + +V+
Sbjct: 13 KKVFNEVYLPYIDNEDRLLIFY------GGAGSGKSVFVVQRYVYKILNSDLCNVLVARK 66
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ +T+ +A + + +F + + + G+D
Sbjct: 67 TGNTNRTSTFALFKQVIYKWNLGEYFLINKSDMSITCKLNKNQIIFKGLDDVEKI----- 121
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+ +EAS + + L + + +M+ NP +
Sbjct: 122 -------KSTTFETGELTDVWIEEASEIEEDDYKQLNVRLRGGKSKKQIVMSLNPIDI-N 173
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+ ++ D + ID + + + D V G +
Sbjct: 174 HWIKLKLINEDKATYLHTTYKDNRFIDEDYKRELESYKDTDIYYYNVYCLGMWGVLGDSV 233
Query: 296 F 296
F
Sbjct: 234 F 234
>gi|293570880|ref|ZP_06681926.1| putative phage terminase, large subunit [Enterococcus faecium E980]
gi|291609054|gb|EFF38330.1| putative phage terminase, large subunit [Enterococcus faecium E980]
Length = 596
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 37/305 (12%), Positives = 78/305 (25%), Gaps = 31/305 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--GIS 109
+ WQ + + + GR GKT+L + L ++++ G +
Sbjct: 111 QPWQHFIIGSMYGWVHRDTGERRFREALIFV--GRKNGKTSLISGLSTYMVAYDDEQGAN 168
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLS--------LHPAPWYSDVLHC 160
V LAN+ Q + L+ + ++ + P F S P SD
Sbjct: 169 VYVLANARDQA-SLLFDKAAEMVKQSPALFKKFGKPKRSSINYAPAFSKMEPRASDSRKL 227
Query: 161 SLGIDSKHYSTMCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
++ + G + I + +
Sbjct: 228 DGLNTHFGIFDEIHEFTNYKLINVIKKSRGTRKQPLIVYITTAGYVLDGPLMSYFEQGV- 286
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY--- 273
+ +Y ++ ++ + I G++ Y
Sbjct: 287 -----DCLEHLEDDIDERTFYYLAKLDSAEEADDPRLWIKANPNICLMNFVGMLDDYVKD 341
Query: 274 ---GLDSDVTRVEVCGQFPQQDIDSFIPLNII-EEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + F D SF+ + I + + G D++E
Sbjct: 342 KKDPKEYADWITKQFNLFSDIDELSFVDMPTIKRNNKTIDIETLEGKKCVGGFDLSETED 401
Query: 330 DNTVV 334
V
Sbjct: 402 FTAAV 406
>gi|170732639|ref|YP_001764586.1| terminase [Burkholderia cenocepacia MC0-3]
gi|169815881|gb|ACA90464.1| Terminase [Burkholderia cenocepacia MC0-3]
Length = 521
Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 52/400 (13%), Positives = 94/400 (23%), Gaps = 40/400 (10%)
Query: 16 FDLMWSDEIKLS----FSNFVLHFFPWGEKGTPLEGFSAPRSWQLE-FMEVVDAHCLNSV 70
D +W DE F VL GTPL+ WQ E + +
Sbjct: 9 ADGLWFDEAAADRAVRFFETVLTHTKGEWAGTPLKLS----DWQAENIIRPLFGWKRADG 64
Query: 71 NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEV 128
I R GK+TL+A + L+L+ PG + A Q + ++
Sbjct: 65 TR---RYRTAYIQIPRKAGKSTLSAGIALYLLYADGEPGAEIYSAAADRDQA-SIVFEMA 120
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT----- 183
+ P + + +
Sbjct: 121 KGMIDAAPALRKRAQTFKRAVVVSSSASSYKVLSADAYTKHGLNAHGIIFDELHAQPNRD 180
Query: 184 -------FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
G I + R+ +G
Sbjct: 181 LWDVLTTSTGARRQPLTVAITTAGYDRHSICYELYDYACKVRDGIIDDPSFLPCIYEAGA 240
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG---IIARYGLDSDVTRVEVCGQFPQQDI 293
+ + + + E A + R + Q+ +
Sbjct: 241 DDD----WKSPATWRKAHPGLGVSVKEEYFEQEAAKAAAIPAYENTFRQLLLNQW-TEQA 295
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG-DNTVVVLRRGPVI-EHLFDWSKT 351
+I ++ + P + G D+A V+ G + F W
Sbjct: 296 CRWISMDTWDSCAGELPDLTDH-VCYAGLDLATTTDIAALVLAFPIGSTVYLKPFFWVPE 354
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGART-CDYLEML 390
+ T +K + + A I+A G D +
Sbjct: 355 ENARTRSKRDRVPYEQWIKAGHIEAT-DGKVIDYDVIRQR 393
>gi|160946079|ref|ZP_02093295.1| hypothetical protein PEPMIC_00030 [Parvimonas micra ATCC 33270]
gi|158447842|gb|EDP24837.1| hypothetical protein PEPMIC_00030 [Parvimonas micra ATCC 33270]
Length = 360
Score = 48.4 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 44/177 (24%), Gaps = 17/177 (9%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
+ WQ + + +G + GR GKTTL + L +++ G
Sbjct: 117 QPWQHFIIGSLFGWVHKDTG--IRRFREGLVFVGRKNGKTTLISGLSNYMLGFDGENGAR 174
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCS 161
+ LAN+E Q L+ E + P + + SD
Sbjct: 175 IYVLANAEQQAHE-LFDEAKAMVEKSPYLSKRYKAQRSVIKYDKTYSKIEARASDSKRLD 233
Query: 162 LGIDSKHYSTMCRTYSEER----PDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214
+ + + G + I +
Sbjct: 234 GLNTHLGIFDEIHEFKDFKLINVIKKSRGARKQPLIIYITTAGYVLDGPLMNYYESA 290
>gi|114566835|ref|YP_753989.1| hypothetical protein Swol_1310 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337770|gb|ABI68618.1| hypothetical protein Swol_1310 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 522
Score = 48.4 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 37/247 (14%), Positives = 75/247 (30%), Gaps = 29/247 (11%)
Query: 22 DEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGA 81
++I F + +F + L F P Q++F +D
Sbjct: 8 EKINNDFFLWAKNFIKIIDNNGNLVKFV-PNEQQVDFFNNMDKFN--------------I 52
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I+ R +G ++L LW+ T+P + + ++ + L+ ++ + S +P+K+
Sbjct: 53 IAKSRQLGFSSLAIIYSLWIACTKPNTNCLMVSYNVEST-QALFEKMKQIYSDIPDKY-- 109
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
PA ++ + L S+ S R H +
Sbjct: 110 -------KPAEKRNNRMELYLENGSRIMVKTAGVKSLGRGMNLQYIHLSEFAFY---PDD 159
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRR-LSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
D + ++ TSN F + +K F +
Sbjct: 160 QQKDALVSLEQALAKNMDSKIVIETTSNGYNYYQKLFTNAYKSKQSKYKAFFYPWTSSAT 219
Query: 261 IDPSFHE 267
+ HE
Sbjct: 220 ANQFKHE 226
>gi|307275425|ref|ZP_07556567.1| phage uncharacterized protein [Enterococcus faecalis TX2134]
gi|306507813|gb|EFM76941.1| phage uncharacterized protein [Enterococcus faecalis TX2134]
Length = 418
Score = 48.4 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 91/358 (25%), Gaps = 24/358 (6%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG KTT A + LM P ++I L ++T + + S F +
Sbjct: 52 RGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDVVEIILQVAKVLSSKYFKTLVFALYG 111
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ L + + +L S+ T + + +I D+ D
Sbjct: 112 VELVLLKETTTEIDTNLKTSSRG------TSQLLGMGIYASLTGKHADIVITDDIVNIKD 165
Query: 206 VINLGILGFLTERNANRFWIMTSNPR-RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
++ + + R +G + + + D ID
Sbjct: 166 RVSRAEREKTKLQYQELQNVKNRGGRFINTGTPWHKEDAISKMPNVKKFDCYETGLIDKE 225
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
+ + + + F I+ N + A +
Sbjct: 226 QRKALQQSM--TPSLFAANYELKHIADSESLFTAPTYID---NTNLIYNGVAHIDAAYGG 280
Query: 325 AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+ T+ ++ I + + +I L + Y+ + N
Sbjct: 281 GDSTAF-TIFKEQKDGTIIGFGKKWQKHVDDCLPEILQLHQYYQAGTFYTETNGDKGYLA 339
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL--HVKMADWLEFASLINHSGLIQNLK 440
+L +V + + L + WLE I +
Sbjct: 340 KHLIERSQYVQKYH-----EKTNKFIKISSYLRKYWSQIIWLED----TDKEYIAEIL 388
>gi|78000026|ref|YP_358760.1| putative terminase large subunit [Lactobacillus phage Lc-Nu]
gi|37826004|gb|AAR04625.1| putative terminase large subunit [Lactobacillus phage Lc-Nu]
Length = 630
Score = 48.4 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 48/423 (11%), Positives = 115/423 (27%), Gaps = 62/423 (14%)
Query: 25 KLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA 84
N + +F P WQ ++ + + IS
Sbjct: 78 SSDMVNAIEYFSRLLPNPDDTSKKIQPFKWQSFILDSLIGWR---TVDNGTRFTTSNISI 134
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GKT L + L+ + + N+ +Q L A +
Sbjct: 135 ARQQGKTWLASILINFYYF-------VVCWNATSQ--DLLVASYDSEHATKLFNDVSLQA 185
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYST-MCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L + D + + + + G + + + DE
Sbjct: 186 KTILSLPEFADDARERGVEAQTTQVIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNL 245
Query: 204 PDVINLGILGFLTERNA----NRFWIMTSNP----------------------RRLSGKF 237
+N + + +N I T+ P R F
Sbjct: 246 RPALNETLKQITSGQNGIKNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVF 305
Query: 238 YEIFNKPLDD-------WKRFQIDTRTVEGIDPSFHEGIIARYGLDS------DVTRVEV 284
I+++ +D W + + + + + + D+ + +
Sbjct: 306 QVIYSQDSEDEVFEPETWAKSNPNLLELPKSKRDNLQNALNQDRNDNEREGTLETFVNKS 365
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL----RRGP 340
+ ++ +S++ L+ I+ ++ + + +G D ++ + + +
Sbjct: 366 LNLWSRRFQNSYLSLDNIQRSIIDRFDVN-GRDVFIGFDGSQTNDNTSFGFIYPYTDHDK 424
Query: 341 VIEHLFDWS-----KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+ H+ S + +K GL D +D N + + ++ + V
Sbjct: 425 HMFHVQQHSFIPFAQAKTIEAKSKQDGLDYLKLQDEGFVDITNLASGVINTDQVYQWLVD 484
Query: 396 RVL 398
V
Sbjct: 485 YVN 487
>gi|75675808|ref|YP_318229.1| phage terminase [Nitrobacter winogradskyi Nb-255]
gi|74420678|gb|ABA04877.1| phage Terminase [Nitrobacter winogradskyi Nb-255]
Length = 537
Score = 48.4 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 51/413 (12%), Positives = 106/413 (25%), Gaps = 42/413 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGI 108
WQ + + + RG KT+L + L + PG
Sbjct: 45 DPWQERIIRKLYGPRHEDGRRVVRRLVL---LLPRGNRKTSLCGAITLLHLIGPEKLPGN 101
Query: 109 SVICLANSETQLKTTLWAEVSK--WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
V+ A++ Q L+ EV+ KH + S
Sbjct: 102 LVVSAASAHEQAME-LFNEVAMIVQHDRRLEKHLAVREYTSSITFKAQRSRYIAVASDGK 160
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ + + G ++ PD + + + + +
Sbjct: 161 VQHGKTPNVVIADELHAWEGRAGRVQWEALDSALVKVPDTLMIVATTSGRGQENLAWKTI 220
Query: 227 TSNPRRLSGKFYE-------IFNKPLDDWKRFQIDTRTVEGIDPSFHE--------GIIA 271
+ G+ + + DDW+ + G+ + +
Sbjct: 221 DYAIKVQKGEIDDPATLPVVFMAEEGDDWRDEAVWHALNPGMRHGYPDLTSYRDKAQKAI 280
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE-ALNREPCPDPYAPLIMGCDIAEEGGD 330
D D ++ F+ + + ++ A + +G D++
Sbjct: 281 NSPSDRDSFLQFNLNRWLDHSTSPFVEMLVYDQGARAIDLDELKGEQCWIGVDLSSNSDL 340
Query: 331 NTVVVLR----RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
VV G ++ F + +LR +K + D II
Sbjct: 341 TAVVACWRDGDDGYQVQPWFFCPEDNLRRRADKDGVAYPAWADDGFIIPTPGNVVDFHAV 400
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRT-------------ELHVKMADWLEF 426
+ R ++ A D RN + + V MA ++
Sbjct: 401 ENHIRDLCERFNVREIAFDPHLARNMLSNLLADGLPAVEMRQGWVTMAPAIKE 453
>gi|75675737|ref|YP_318158.1| phage terminase [Nitrobacter winogradskyi Nb-255]
gi|74420607|gb|ABA04806.1| phage Terminase [Nitrobacter winogradskyi Nb-255]
Length = 588
Score = 48.4 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 39/350 (11%), Positives = 91/350 (26%), Gaps = 40/350 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-TRPGISV 110
+ WQ + + + + G+G GK+ L A + +++ R +
Sbjct: 74 QPWQAFIIGSLFGW---KNALGFRRFRRAYVEIGKGNGKSPLAAGIGHYMLLGCRKLRAE 130
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKH-----------WFEMQSLSLHPAPWYSDVLH 159
+ A ++ L+ + P W S + +
Sbjct: 131 VYSAATDKDQAAILFRDAVAMWERSPALRRRLKPKGANPVWELHTSRPGVNSYFKPISSD 190
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTF-----VGHHNTYGMAIINDEASGTP------DVIN 208
+ Y + E ++ G + SG +
Sbjct: 191 KKGKSGIRPYCALIDEVHEHPDNSVIEMMRAGTKGNQEALLFEITNSGFDKKTVCGQEHD 250
Query: 209 LGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFH-E 267
+ + E + ++ +N F D+ + + I P+F E
Sbjct: 251 MSVRILKREFENDAWFAFIANLDETDDPF-------EDESCWPKANPNLGVSIQPAFIRE 303
Query: 268 GIIARYGLDSDVTRVEVC--GQFPQQDIDSFIPLNIIEEA---LNREPCPDPYAPLIMGC 322
+ G+ S V Q+ + + IP + E+ ++ + P G
Sbjct: 304 QVQEAQGMPSKEGLVRRLHFCQWTESATSA-IPRKVWEDCEGDVDVDKLTADNVPCYGGL 362
Query: 323 DIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
D++ + + + ++ T K
Sbjct: 363 DLSRARDLTAFTLTWLLDATKDQWRFASKTWFWTPADTLKERAKTDRAPY 412
>gi|13242438|ref|NP_077457.1| DNA packaging terminase subunit 1 [Cercopithecine herpesvirus 9]
gi|11036590|gb|AAG27219.1|AF275348_40 unknown [Cercopithecine herpesvirus 9]
Length = 745
Score = 48.4 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 51/166 (30%), Gaps = 22/166 (13%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GKT L+ LMST GI V A+ + ++ E+
Sbjct: 267 PRRHGKTWFIVSLIALLMSTFRGIKVGYTAH-IRKATEPVFEEIKA-------------- 311
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTM---CRTYSEERPDTFVGHHNTYGMAIINDEAS 201
W+ + +S +S C T G + DEA+
Sbjct: 312 ----RLEQWFGTERIEHVKGESITFSFSDGCCSTAVFSSSHNTNGIRGQTFNLLFVDEAN 367
Query: 202 GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
I+GFL + N ++ ++N + S F D
Sbjct: 368 FIRPDAVQTIVGFLNQTNCKIIFVSSTNTGKASTSFLYNLRNSSDR 413
>gi|302343668|ref|YP_003808197.1| Terminase [Desulfarculus baarsii DSM 2075]
gi|301640281|gb|ADK85603.1| Terminase [Desulfarculus baarsii DSM 2075]
Length = 540
Score = 48.4 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 43/296 (14%), Positives = 75/296 (25%), Gaps = 26/296 (8%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGI 108
R WQ + ++ + V K ++ R GKT L A L L +
Sbjct: 60 RPWQKKIVKALY-----RTRGGRRVVRKALLTLPRKNGKTALAAALALAHLIGPEAEQRG 114
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V A Q + ++AE+ + +P A + S
Sbjct: 115 QVYSAAADRGQA-SIIFAEMEAVIGAVPEF-AARCNVQRFRKAIEDDVTGSVYHALSSDD 172
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ S D + ++ A + + + I ++ + ++
Sbjct: 173 RKAHGLSPSFVVYDELAQARTRHLFDNLDTGAGARREPLMVVISTQSSDHHHVMSELVEY 232
Query: 229 NPRRLSGKFYEI--------FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA------RYG 274
+ L G + D W D E + R
Sbjct: 233 GRKVLDGVIEDETFLPIIYAAPPDADPWSEEVWRACNPALGDFRSLEEMRQFAAQAKRIP 292
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGG 329
V R Q P + FI E +P P G D+
Sbjct: 293 AKETVFRALYLNQ-PVEVDGRFIAQADWEACRGEVDPEALRGRPCWAGLDLGSTTD 347
>gi|228928749|ref|ZP_04091784.1| Terminase [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228830904|gb|EEM76506.1| Terminase [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 574
Score = 48.0 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 56/183 (30%), Gaps = 12/183 (6%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
W K LE WQ F+ ++ R GK+TL++ +
Sbjct: 100 WAGKPIDLEL------WQQAFLAATFGFVHKIDGTRKYREAFLVVA--RKNGKSTLSSGI 151
Query: 98 VLWL--MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
L+L G V +A E Q K +W+E + + P + A +
Sbjct: 152 CLYLQVADGEGGSEVYAVATKEQQAK-IVWSESKRMVKKSPALSKRIKTLVKELTAGFND 210
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
VL S + + N Y + + A P ++ + G +
Sbjct: 211 SVLKPVGSDSDTLDGLNVHGASLDEIHAWKDK-NLYDVIVDGTSAREQPLILMITTAGTV 269
Query: 216 TER 218
E
Sbjct: 270 RES 272
>gi|317132776|ref|YP_004092090.1| Terminase [Ethanoligenens harbinense YUAN-3]
gi|315470755|gb|ADU27359.1| Terminase [Ethanoligenens harbinense YUAN-3]
Length = 535
Score = 48.0 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 44/403 (10%), Positives = 91/403 (22%), Gaps = 69/403 (17%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + + + GK+ L A + L L V
Sbjct: 52 DWQEQIVRDLFGVIKENGYR---QFNTAYVEIPKKQGKSELAAAIALLLTCGDNEERAEV 108
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q K ++ + P ++ + + L D
Sbjct: 109 YGCAADRNQAK-IVFDVAVDMVRFCPALSKRVKILESQKRLEYLPTHSFYQVLSAD---- 163
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
++ F H + + G+ D + +T + I
Sbjct: 164 VANKHGFNTHGVI-FDELHTQPNRKLFDVMTKGSGDARMQPLFFLITTAGNDTHSICYEQ 222
Query: 230 PRRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVEGI--------DPSFHEGII 270
+ + P +DW Q+ + + + E
Sbjct: 223 HEKALDIMSGRKHDPTFYPVIFGADESEDWTDPQVWKKANPSLGITVGIDKVKAACESAK 282
Query: 271 ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG- 329
G + R Q+ +Q + A G D++
Sbjct: 283 QNPGE-ENSFRQLRLNQWVKQSVRWMPMDKWDACAFPVNEDELEGRVCYGGLDLSSTTDI 341
Query: 330 -----------------------------------DNTVVVLRRGPVIEHLFDWSKTDLR 354
D+ L + + +
Sbjct: 342 TAFVLVFPPLDEDDKYMILPYFWVPEETLDLRVRRDHVPYDLWNRQGVLETTEGNVIHYG 401
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I L E++ I D + LE +G+ V +
Sbjct: 402 YIEKFIENLGERFNIREIAFDRWGA-VQMVQNLEGMGFTVIPI 443
>gi|253699636|ref|YP_003020825.1| DNA packaging protein GP17 (terminase) [Geobacter sp. M21]
gi|251774486|gb|ACT17067.1| putative DNA packaging protein GP17 (terminase) [Geobacter sp. M21]
Length = 504
Score = 48.0 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 63/420 (15%), Positives = 104/420 (24%), Gaps = 88/420 (20%)
Query: 41 KGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGA---------ISAGRGIGKT 91
K T LE R W+L + V N + V K I R G T
Sbjct: 2 KATELEEKLGSRLWRLNNLYKVIDKDGNLIQFRLNHVQKELLKNLWYLNVILKSRQQGIT 61
Query: 92 TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPA 151
T L L L I +A+ +T ++ LP +
Sbjct: 62 TFICILFLDLALFSENIHCGIVAHRLPDAQTFFDDKIRFAYDNLPE---------EIRER 112
Query: 152 PWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGI 211
L + T+ + T+ H + I + P
Sbjct: 113 ITLVKDTSMRLVFSNGSKITVGVSLR---SGTYQYLHISELGKI----CAQFPKKALEIK 165
Query: 212 LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD-----------DWKRFQIDTRTVE- 259
G L A + + S SG FY + DW+
Sbjct: 166 SGALNTIKAGNYIFIESTAEGRSGDFYSYCQLAENGLREGKELTLLDWRFHFFGWTLDPA 225
Query: 260 -----------GIDPSFHEGIIARYGLDSDVTRVEVCG-------------QFPQQDIDS 295
+ + ++GL +D + ++P ++
Sbjct: 226 ARLNPEGVTITQELHEYFRELEVKHGLVTDDWQRAWYAKKLLQQGVDMMYREYPATSEEA 285
Query: 296 FIPLNIIEEALNREP---------------CPDPYAPLIMGCDIAEEGGDNTVVVLRRG- 339
F I A ++ +P P+ D+ D T +V R+
Sbjct: 286 FF--AAIHGAYYKQQMLKLRQQVPPRFATVPWEPKLPVDTAWDLGM--DDTTCIVFRQRY 341
Query: 340 ---PVIEHLFDWSKTDLRTTNNKISG----LVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
+ + S L + Y P + + N D L LG
Sbjct: 342 GTQNRLIDYHENSGEGLPHYVKVLQDKPYTYGRHYLPHDSKVRSLNDAVSREDKLYELGL 401
>gi|229123217|ref|ZP_04252422.1| Terminase [Bacillus cereus 95/8201]
gi|228660232|gb|EEL15867.1| Terminase [Bacillus cereus 95/8201]
Length = 574
Score = 48.0 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 33/183 (18%), Positives = 56/183 (30%), Gaps = 12/183 (6%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
W K LE WQ F+ ++ R GK+TL++ +
Sbjct: 100 WAGKPIDLEL------WQQAFLAATFGFVHKIDGTRKYREAFLVVA--RKNGKSTLSSGI 151
Query: 98 VLWL--MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
L+L G V +A E Q K +W+E + + P + A +
Sbjct: 152 CLYLQVADGEGGSEVYAVATKEQQAK-IVWSESKRMVKKSPALSKRIKTLVKELTAGFND 210
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
VL S + + N Y + + A P ++ + G +
Sbjct: 211 SVLKPVGSDSDTLDGLNVHGASLDEIHAWKDK-NLYDVIVDGTSAREQPLILMITTAGTV 269
Query: 216 TER 218
E
Sbjct: 270 RES 272
>gi|28395422|gb|AAO38880.1| UL15 [Suid herpesvirus 1]
Length = 753
Score = 48.0 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 44/335 (13%), Positives = 80/335 (23%), Gaps = 43/335 (12%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ L S + + + R GKT L+ ++T GI V A+
Sbjct: 262 LLAAFDTPLFSEDAVRHFRQRVTVFLVPRRHGKTWFLVPLIALALATFRGIRVGYTAHIR 321
Query: 118 TQ---LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ + A + +W H P S
Sbjct: 322 KATEPVFEEIHARLRRWCRDARVDHVKGENITVTFPDGARS------------------- 362
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
T G + DEA+ ILGF+ + + ++ ++N +
Sbjct: 363 TIVFASSHNTNGIRGQDFNLLFVDEANFIRPDAVQTILGFMNQASCKIIFVSSTN-TGKA 421
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ + D E + +
Sbjct: 422 STSFLTNLRGTDMLNVVTYVCD----------EHMRRVVAHTDAT-----ACSCYVLNKP 466
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR 354
FI ++ PD + I+G +A + V+ G S + R
Sbjct: 467 VFITMDAATRTTAERLLPDSFMQEILGGAVA--AREAPVLTRAAGERFLLYRPSSVANRR 524
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ V+ A TG
Sbjct: 525 LLAGTLHVYVDPAFTANAR--AFGTGVAVVGSYRR 557
>gi|124005744|ref|ZP_01690583.1| hypothetical protein M23134_03970 [Microscilla marina ATCC 23134]
gi|123988812|gb|EAY28418.1| hypothetical protein M23134_03970 [Microscilla marina ATCC 23134]
Length = 535
Score = 48.0 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 44/271 (16%), Positives = 81/271 (29%), Gaps = 21/271 (7%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AG+G GKT + L+S PG+ AN++ QL + V L + + E
Sbjct: 33 AGQGAGKTHGAGLISFRLISNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDEH 92
Query: 144 QSLSLH-----PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ P +S H +K + + H I D
Sbjct: 93 TGEGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAILD 152
Query: 199 EASGTPDV-INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD----DWKRFQI 253
E T + + ILG L ++ + + + + + N+P + ++
Sbjct: 153 ETKDTREEAVQEVILGRLRQQGLYISIVSKALTDKEYDEGNTVANQPFNPLYIFTSPAKV 212
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG-----------QFPQQDIDSFIPLNII 302
+ E I A+ + +V G + ++I
Sbjct: 213 PWINDWFELNEYEEEIKAKIYDPPRYFKKQVSGGSKFVVISATHLNLKNLPSNYIEKQET 272
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
A +R PL + D +V
Sbjct: 273 NLASHRHGMLIYGDPLAKSGGEFWKQWDASV 303
>gi|14251127|ref|NP_116494.1| putative large terminase subunit [Lactococcus phage BK5-T]
gi|14209619|gb|AAK56802.1|AF176025_2 putative large terminase subunit [Lactococcus phage BK5-T]
gi|26005523|emb|CAC80143.1| hypothetical protein [Lactococcus phage BK5-T]
Length = 657
Score = 48.0 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 45/322 (13%), Positives = 92/322 (28%), Gaps = 48/322 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PG 107
WQ M ++ NS V ++S RG GKT + A L+++
Sbjct: 117 MPWQKFIMCMLIGWR-NSEGGKRFTVAIISVS--RGQGKTYILAILMVYSFLFESLGLSN 173
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + + Q L+ V L + F+ + + +
Sbjct: 174 QDFLVSSINFKQTSK-LFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNN 232
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + H T + E + + I+ + G + +N I T
Sbjct: 233 KIRAIS-----HEAGQYDSFHFTTAIFDEIGEVTN-REKISKIVSGQVLVKNHQFVQIST 286
Query: 228 SNPRRLSGKFYEI---FNKPLDDW-----KRFQIDTRTVEGIDPSFHEGIIARYG----- 274
S P + DW + + + E +
Sbjct: 287 SYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELE 346
Query: 275 -------------LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+SD+ + + + QQD+DS++ L +E+A+ E
Sbjct: 347 DKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIH- 405
Query: 315 YAPLIMGCDIAEEGGDNTVVVL 336
+G D + + + +
Sbjct: 406 GQRCYIGIDYSMMSDNTAIAFV 427
>gi|323703887|ref|ZP_08115520.1| hypothetical protein DesniDRAFT_2732 [Desulfotomaculum nigrificans
DSM 574]
gi|323531136|gb|EGB21042.1| hypothetical protein DesniDRAFT_2732 [Desulfotomaculum nigrificans
DSM 574]
Length = 525
Score = 48.0 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ + +++ N IS R +G TT + LWL TRP + + ++ +
Sbjct: 40 ILNEQQEYFYQNMDKFN------IISKSRQLGFTTYSLAYCLWLACTRPNTNCLIVSYNV 93
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
++ + + + + +P+K+ PA ++ + L +S+ S
Sbjct: 94 ESTQSI-FERLKQMFASIPDKY---------KPAERRNNRMELYLENNSRIIVKTAGVKS 143
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
R T + D + ++ TSN K
Sbjct: 144 LGRGMTLQYILLSEFAFY---PDDQQKDSLVSLEQALAKNEDSKIVIETTSNGYNYYQKL 200
Query: 238 YEIFNKPLDDWKRFQIDTRTVEGIDPSFHE 267
+ K +K F + + HE
Sbjct: 201 FMSAYKGNSKYKAFFFPWYSSATSNQFKHE 230
>gi|148241989|ref|YP_001227146.1| hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307]
gi|147850299|emb|CAK27793.1| Hypothetical protein SynRCC307_0890 [Synechococcus sp. RCC307]
Length = 98
Score = 48.0 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
+ +GR GKT L + L T+PG V LA S Q K WA++
Sbjct: 25 VFSGRRFGKTRLMLTAGVELCLTKPGAKVFHLAPSRKQAKDIAWADLK 72
>gi|259908703|ref|YP_002649059.1| Putative phage terminase, large subunit [Erwinia pyrifoliae Ep1/96]
gi|224964325|emb|CAX55834.1| Putative phage terminase, large subunit [Erwinia pyrifoliae Ep1/96]
Length = 470
Score = 47.6 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 31/269 (11%), Positives = 61/269 (22%), Gaps = 23/269 (8%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
I +G+G GK+ L + L+L+ P V A + Q L+ + + P
Sbjct: 3 YIESGKGSGKSPLAGGVGLYLLMADKEPRAEVYAAATKKDQAM-ILFRDAVTMVDQSPA- 60
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ W L H A++
Sbjct: 61 LAKRITKSGTGLNVWNLAFLQTGSFFKPISSDDGQSGPRPHGA-LIDEVHEHKTNAVVEM 119
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRL--------SGKFYEIFNK---PLDD 247
+GT + + + F+ D
Sbjct: 120 MRAGTKGRRQALMFLITNSGHDKTSVCFEYHEYGRKVAAGDLEDDSFFSFICSLDEGDDP 179
Query: 248 WKRFQIDTRTVEG-----IDPSFHEGIIARYGLDSDVTRVEVC--GQFPQQDIDSFIPLN 300
+K + E + G+ S + V Q+ +
Sbjct: 180 FKDETCWGKANPSLGQTFTAKYLREQVTQARGMPSKESIVRRLNFCQWVESADPWIDSDT 239
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + +P G D++
Sbjct: 240 WMNCEQDFDPDELAGEECYGGLDLSGSRD 268
>gi|13095784|ref|NP_076675.1| terminase [Lactococcus phage bIL286]
gi|12830973|gb|AAK08328.1|AF323669_41 terminase [Lactococcus phage bIL286]
Length = 660
Score = 47.6 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 45/322 (13%), Positives = 91/322 (28%), Gaps = 48/322 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PG 107
WQ M ++ NS V ++S RG GKT + A L+++
Sbjct: 120 MPWQKFIMCMLIGWR-NSEGGKRFTVAIISVS--RGQGKTYILAILMVYSFLFESLGLSN 176
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + + Q L+ V L + F+ + + +
Sbjct: 177 QDFLVSSINFKQTSK-LFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNN 235
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + H T + E + + I+ + G + N I T
Sbjct: 236 KIRAIS-----HEAGQYDSFHFTTAIFDEIGEVTN-REKISKIVSGQVMVENHQFVQIST 289
Query: 228 SNPRRLSGKFYEI---FNKPLDDW-----KRFQIDTRTVEGIDPSFHEGIIARYG----- 274
S P + DW + + + E +
Sbjct: 290 SYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELE 349
Query: 275 -------------LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+SD+ + + + QQD+DS++ L +E+A+ E
Sbjct: 350 DKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIH- 408
Query: 315 YAPLIMGCDIAEEGGDNTVVVL 336
+G D + + + +
Sbjct: 409 GQRCYIGIDYSMMSDNTAIAFV 430
>gi|15673381|ref|NP_267555.1| terminase large subunit [Lactococcus lactis subsp. lactis Il1403]
gi|12724386|gb|AAK05497.1|AE006371_11 prophage pi3 protein 26, terminase large subunit [Lactococcus
lactis subsp. lactis Il1403]
Length = 657
Score = 47.6 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 45/322 (13%), Positives = 91/322 (28%), Gaps = 48/322 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PG 107
WQ M ++ NS V ++S RG GKT + A L+++
Sbjct: 117 MPWQKFIMCMLIGWR-NSEGGKRFTVAIISVS--RGQGKTYILAILMVYSFLFESLGLSN 173
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + + Q L+ V L + F+ + + +
Sbjct: 174 QDFLVSSINFKQTSK-LFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNN 232
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + H T + E + + I+ + G + N I T
Sbjct: 233 KIRAIS-----HEAGQYDSFHFTTAIFDEIGEVTN-REKISKIVSGQVMVENHQFVQIST 286
Query: 228 SNPRRLSGKFYEI---FNKPLDDW-----KRFQIDTRTVEGIDPSFHEGIIARYG----- 274
S P + DW + + + E +
Sbjct: 287 SYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLELE 346
Query: 275 -------------LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+SD+ + + + QQD+DS++ L +E+A+ E
Sbjct: 347 DKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKAIIPEFSIH- 405
Query: 315 YAPLIMGCDIAEEGGDNTVVVL 336
+G D + + + +
Sbjct: 406 GQRCYIGIDYSMMSDNTAIAFV 427
>gi|198424005|ref|XP_002119445.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 2129
Score = 47.6 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 23/182 (12%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98
EK + FS Q + + H N I A G GKT +
Sbjct: 1258 DEKFESVYNFSHFNPIQTQIFHCIYHHDTN-----------VLIGAPTGSGKTVAAELAI 1306
Query: 99 LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDV 157
++ T+PG + +A + ++ + W L +K + ++ +
Sbjct: 1307 FRMLRTQPGAKAVYVAPLKALVRERM----KDWEKRLKHKLGLKLVELTGDIAPDMRAVA 1362
Query: 158 LHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE 217
+ + + + R+++ +I DE + ++
Sbjct: 1363 RADVIITTPEKWDGVSRSWNTRGYVR-------KVSLLIIDEIHLLGQDRGPVLEVIVSR 1415
Query: 218 RN 219
N
Sbjct: 1416 TN 1417
>gi|188580687|ref|YP_001924132.1| hypothetical protein Mpop_1430 [Methylobacterium populi BJ001]
gi|179344185|gb|ACB79597.1| protein of unknown function DUF264 [Methylobacterium populi BJ001]
Length = 421
Score = 47.6 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 44/361 (12%), Positives = 88/361 (24%), Gaps = 38/361 (10%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLWLMSTRP------GIS 109
+E H P P + A+ GRG GKT A V L P
Sbjct: 10 RLLEADWLHRARHDQLPPPGDWTTWAVIGGRGSGKTRTGAEWVRGLAHGDPVFTAEAVGR 69
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + + ++ + L P +
Sbjct: 70 IALVGETFADVRDVM-----------------IEGPSGLLALPRLGGPPPVWQPSRRRVM 112
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFWIM 226
+ A +DE + + ++ G +
Sbjct: 113 FGNGAVALAFSAEEPDSLRGPQFGAAWSDEVAKWREAEAAYDMIQFGLRLGAHPRGLVTT 172
Query: 227 TSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG 286
T P L + + + + + P F E ++ RY + + R E+ G
Sbjct: 173 TPRPVPLIRRLLADPRTVVTRSRT----ADNAQNLAPRFLEEVVGRYA-GTRIGRQELDG 227
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV------VVLRRGP 340
+ + D+ + IE P + + + G + +
Sbjct: 228 ELIEDRPDALWTRDGIERTRIHAAPPLQRIAVAVDPPASSRAGADACGIVAAGIAADGTA 287
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
+ + L + + D ++ + N G L V V +
Sbjct: 288 YVLADATLERAAPAAWAQGALALYHRLKADVLVAEVNQGGEMVVAVLAEADPSVPVVTVR 347
Query: 401 K 401
Sbjct: 348 A 348
>gi|294783569|ref|ZP_06748893.1| phage terminase large subunit [Fusobacterium sp. 1_1_41FAA]
gi|294480447|gb|EFG28224.1| phage terminase large subunit [Fusobacterium sp. 1_1_41FAA]
Length = 572
Score = 47.6 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 34/326 (10%), Positives = 82/326 (25%), Gaps = 61/326 (18%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL-VLWLMSTRPGISV 110
R +Q + + + + GR GK+ L+ L+ +
Sbjct: 70 RGFQEFIIGSLHGWKKKKTGDRRFREAYLQV--GRRNGKSFLSGIESTLFSSMIGVKERI 127
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
C A + Q +W EV ++ S + ++
Sbjct: 128 FCAATKQDQA-NIVWDEVRNFIE-----------SDRELTELYVVKEHDRTIKSSLTGSV 175
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSN 229
+ + D + I DE P + I + + + +T+
Sbjct: 176 IKALSKDTKGMD------GFGNVLAICDELHAHPNNQIYKLLFDGQADVDNALTLAITTA 229
Query: 230 PRRLSGKFYE----------------------IFNKPLDDWKRFQIDTRTVEGI------ 261
L+ YE DD ++ ++
Sbjct: 230 GFNLNSFCYEHYKFCEKILEGVIEKDTLFIFICEMDADDDIWDWKNWLKSNPYFLYEEDG 289
Query: 262 ---DPSFHE-------GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII-EEALNREP 310
+ + + G + + ++ +I L + E +
Sbjct: 290 ITPNKKKIDLFKQKAIDAKEKGGAELVNFLTKQLNRWVTTGSGQYINLEKLKECESDLTL 349
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVL 336
+G D+++ G ++ ++
Sbjct: 350 EDMKGKDCYLGFDLSKGGDLTSIALV 375
>gi|71065034|ref|YP_263761.1| phage terminase, large subunit [Psychrobacter arcticus 273-4]
gi|71038019|gb|AAZ18327.1| probable phage terminase, large subunit [Psychrobacter arcticus
273-4]
Length = 581
Score = 47.6 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 33/321 (10%), Positives = 78/321 (24%), Gaps = 35/321 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW--LMSTRPGIS 109
WQ+ + + + + R K+TL A + L+ G
Sbjct: 85 EPWQIFIIANLFGW---VDFDGKRRFRYAYVEVPRKNAKSTLAAGIGLYLGFADGEMGAE 141
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPN---KHWFEMQSLSLHPAPWYS--DVLHCSLGI 164
V A + Q + ++ + P+ E+ + ++ S + G
Sbjct: 142 VYSAATTRDQAR-IVFETAQSMVRKRPDMQKAMGIEVSAHAVSSIATASTFKAVSRDYGG 200
Query: 165 DSKHYSTMCRTYSEERPDTF----------VGHHNTYGMAIINDEASGTPD---VINLGI 211
+ + E +G + I +
Sbjct: 201 NLDGLNVQGALIDELHAHKSNDTYEVMATGMGAREQPLLFAITTAGFILDGVCYEQRTLV 260
Query: 212 LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA 271
L+ ++ + + + + W++ + D E A
Sbjct: 261 TKVLSGLESHDRYFGIIYTIDEADDWRD-----PQSWRKANPNYGISVHKDALQAEYQRA 315
Query: 272 RYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGG 329
D+ + + + + A P G D+A +
Sbjct: 316 AISPDAQADFLTKHLCVWVAARSGWLNMQDWDDAADKTLVAGLFDKYPCFGGLDLASKVD 375
Query: 330 DNTVVVLRRGPVIEHLFDWSK 350
+ R ++ + D S
Sbjct: 376 ----LAARIKLFVKKIDDESH 392
>gi|115374293|ref|ZP_01461578.1| ATP/GTP-binding site motif A [Stigmatella aurantiaca DW4/3-1]
gi|310818178|ref|YP_003950536.1| large terminase [Stigmatella aurantiaca DW4/3-1]
gi|115368714|gb|EAU67664.1| ATP/GTP-binding site motif A [Stigmatella aurantiaca DW4/3-1]
gi|309391250|gb|ADO68709.1| large terminase [Stigmatella aurantiaca DW4/3-1]
Length = 472
Score = 47.6 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 59/467 (12%), Positives = 117/467 (25%), Gaps = 72/467 (15%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98
G + + F ++E + P + + AGRG GKT A V
Sbjct: 33 GSRAQLAKLFGGLEDKEVELLVFDLDFWARREQVPPDKFSTCFVMAGRGFGKTWCGARWV 92
Query: 99 L---WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS 155
+ W + + ++ T+ S L+L P +
Sbjct: 93 IKKAWQA----KSVGALIGPTAADVRDTMIRGASGILALSP----------PGFTPRYEP 138
Query: 156 DVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL-GF 214
+ D DE + +
Sbjct: 139 SKRRVT--------WPNGVYAICYSADKPDRLRGPNAGWGWGDEPASWKHDMAAVDQLPL 190
Query: 215 LTERNANRF---WIMTSNPR----RLSGKFYEIFNKPLDDWKRFQIDTRTVE--GIDPSF 265
+ ++T PR F + L + + + PS
Sbjct: 191 VLRIGTREHPPQLLLTGTPRPLKKIEDLLFTNAETQQLKPGVVLRTGSSLSNAANLAPSA 250
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI-PLNIIEEALNREPCPDPYAPLIMGCDI 324
+ A ++ + EV G+ + I+ D
Sbjct: 251 IANMRAL--ANTRWGQQEVLGRLLFDVPGAIFGSARWGRVHAEPHEYAQQLDRRIVSVDP 308
Query: 325 ---AEEGGDNTVVVL----------RRGPVIEHLFD----WSKTDLRTTNNKISGLVEKY 367
+E G D T +++ G ++ + + R ++
Sbjct: 309 SPTSETGSDETGIIVQGCKSSVLYGADGISLKRVSVLADLSRRASPREWATTAIRAYLEW 368
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA 427
DA++++ N TG + L V + V +++R E +A+
Sbjct: 369 GCDALVVEVN-TGGEMVETLISTVAAEMGVSVNVKPVRATSAKSKRAEPVSALAEA---G 424
Query: 428 SLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
+ G Q L+ S G + D +D +
Sbjct: 425 RIEF-VGTFQKLEQQLSKFTGVNGR--------RD----DRADAFCW 458
>gi|213865421|ref|ZP_03387540.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 85
Score = 47.2 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 20/67 (29%)
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
I W D R + I L ++Y I ID+ G ++ V +
Sbjct: 15 KFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYLNVKDFFPAVREFV 74
Query: 399 GQKRAVD 405
+
Sbjct: 75 YNPNVKN 81
>gi|295428020|ref|ZP_06820652.1| phage terminase [Staphylococcus aureus subsp. aureus EMRSA16]
gi|295128378|gb|EFG58012.1| phage terminase [Staphylococcus aureus subsp. aureus EMRSA16]
Length = 453
Score = 47.2 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 31/272 (11%), Positives = 60/272 (22%), Gaps = 29/272 (10%)
Query: 85 GRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLPN----- 137
GR GKTT + + + +S G + LAN Q + L+ E + P
Sbjct: 2 GRKNGKTTTISGVANYGVSQDGENGAEIHLLANVMKQAR-ILFDESKAMIKASPILSREF 60
Query: 138 ---KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----PDTFVGHHNT 190
+ P SD + + +
Sbjct: 61 RPLRDEIHYDKTISKIMPQASDSDKLDGLNTHIGIFDEIHEFKDYKLISVIKNSRAARLQ 120
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
+ I + + R + + +
Sbjct: 121 PLLIYITTAGYQLDGPLVDMVEM------GRDILDGVIEDERTFYYLASLDDDDDMN-DS 173
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGL------DSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
E + + + + F D SFI +++
Sbjct: 174 SNWIKANPNLGVSIDLEEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYQTLQK 233
Query: 305 ALNREPCPD-PYAPLIMGCDIAEEGGDNTVVV 335
+ D P +G D++E
Sbjct: 234 NNDVIALDDLEGRPCTIGYDLSETEDFTAACA 265
>gi|326336497|ref|ZP_08202667.1| terminase large subunit protein [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325691370|gb|EGD33339.1| terminase large subunit protein [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 390
Score = 47.2 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 39/327 (11%), Positives = 90/327 (27%), Gaps = 39/327 (11%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ KT ++ T P + + + LK +++ + + L L
Sbjct: 23 VSAQGSSRSSKTFNILIWLIIYCLTYPKTRLSIVRATLPALKGSVFVDFKEILYKLNVFD 82
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + + T SE++ + +E
Sbjct: 83 EDSINKSEMI------------YTFPNGSWVEFFSTDSEQK------LRGRKRDVLYVNE 124
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A + + L R + + S + F +
Sbjct: 125 A----NELKFIEFQQLKMRTTQFTIVDYNPS--FSNDHWLCELNKDPRTYHFISTYKDNP 178
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
++ + + I + + + +V GQ + F + I+E E
Sbjct: 179 FLEQTVIDEIESLQHKNRSLWQVYGLGQQAMIEGLIFEKVTIVE-----EIPIWAKKRY- 232
Query: 320 MGCDIAEEGGDNTVV---VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+G D +V L I+ + ++ I + YR II ++
Sbjct: 233 LGLDFGFTHDPTAIVEVAFLDNKVYIDEICYQTQMLTTD----IIEALRPYRIYKIISES 288
Query: 377 NNTGARTCDYLEMLGYHVYRVLGQKRA 403
+ R ++ GY++ V +
Sbjct: 289 ADP--RLVKEIKNAGYNITAVTKGHGS 313
>gi|298376478|ref|ZP_06986433.1| terminase large subunit [Bacteroides sp. 3_1_19]
gi|298266356|gb|EFI08014.1| terminase large subunit [Bacteroides sp. 3_1_19]
Length = 481
Score = 47.2 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 97/351 (27%), Gaps = 51/351 (14%)
Query: 58 FMEVVDAHCLNSVNNPNP-EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI--CLA 114
F++ V + + + A+S GK+ +++ + W++ P SV+ C +
Sbjct: 46 FLKKVADAFTRVYESYVSGVIRRLAVSMPPRAGKSYISSLFISWMLGHFPEESVMRNCCS 105
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
++ L L + + K F + + +
Sbjct: 106 DT---LYNKLSYDTRDIVRSSRFKEIFP------------------DIQLRGDKQNVHGW 144
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ R ++ G + D + + L++ N + W
Sbjct: 145 SLEAARQVSYFGAGVGGTVIGFGASMLAMTDDLYKSLEDALSDTNNEKVWSWKQGTHDSR 204
Query: 235 GKFYEIFNKPLDDWKRFQI----------------------DTRTVEGIDPSFHEGIIAR 272
+ W + D E + + + +
Sbjct: 205 IEGNCCSIDIGTRWSATDVLGRMEEMGKYDEIIRIAALDENDCSFCEDVHTTEYYHELRE 264
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
DS + E + + P + + + +I D+A+EG D+
Sbjct: 265 ETDDS-IWCAEYMQEPIEAI-GLLFPKSELNRFKLADIEGKQPDGVIGATDVADEGDDDF 322
Query: 333 V--VVLRRGPVIEHLFDWSKTDLRTTNN-KISGLVEKYRPDAIIIDANNTG 380
+ G D K+ L+ R D + I++NN G
Sbjct: 323 CAPIAKVFGTKYFITDVLFTKDNVEITEPKLVSLILDTRCDNMRIESNNGG 373
>gi|300766681|ref|ZP_07076598.1| bacteriophage terminase large subunit [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300495781|gb|EFK30932.1| bacteriophage terminase large subunit [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 632
Score = 47.2 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 43/324 (13%), Positives = 91/324 (28%), Gaps = 50/324 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PG 107
WQ M ++ + + +S RG GKT L A + +
Sbjct: 99 MPWQEFIMAMLIGWRNDDGGK---RFSRAIVSVARGQGKTYLMAIITAYSFLIESLGLSN 155
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + + Q L + L+ + F+ + +
Sbjct: 156 QDYLVSSINYKQTSKIL-GYIKSMLAKIATIEPFKTLIQDSGLDTRTLSSQADQVTMSKT 214
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWI 225
+ ++ + D+F + I DE I+ + G + RN I
Sbjct: 215 NNKLRAISHEAGQYDSF------HFTTAIFDEIGEVRTRQKISKIVSGQVKVRNKQFIQI 268
Query: 226 MTSNP-------RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG---- 274
T+ P + L D + + + +D ++ + +
Sbjct: 269 STAYPDPNVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDNLDETYKPDMWVKSNPLLD 328
Query: 275 ---------------LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
DSD + + + +Q DSF+ L +E A+
Sbjct: 329 LPSQREVLLNGLTDKRDSDALSGTLNDFQNKNLNLWLEQSTDSFLKLPDVERAIISSFSF 388
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVL 336
D + +G D + + + +
Sbjct: 389 D-DRQVYIGFDYSMFSDNTALAFV 411
>gi|281491951|ref|YP_003353931.1| phage terminase large subunit [Lactococcus lactis subsp. lactis
KF147]
gi|281375660|gb|ADA65164.1| Phage protein, terminase large subunit [Lactococcus lactis subsp.
lactis KF147]
Length = 656
Score = 47.2 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 45/322 (13%), Positives = 92/322 (28%), Gaps = 48/322 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PG 107
WQ M ++ NS V ++S RG GKT + A L+++
Sbjct: 116 MPWQKFIMCMLIGWR-NSEGGKRFTVAIISVS--RGQGKTYILAILMVYSFLFESLGLSN 172
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + + Q L+ V L + F+ + + +
Sbjct: 173 QDFLVSSINFKQTSK-LFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVVMKKMNN 231
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + H T + E + + I+ + G + +N I T
Sbjct: 232 KIRAIS-----HEAGQYDSFHFTTAIFDEIGEVTN-REKISKIVSGQVLVKNHQFVQIST 285
Query: 228 SNPRRLSGKFYEI---FNKPLDDW-----KRFQIDTRTVEGIDPSFHEGIIARYG----- 274
S P + DW + + + E +
Sbjct: 286 SYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWLKSNPLLELE 345
Query: 275 -------------LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+SD+ + + + QQD+DS++ L +E+A+ E
Sbjct: 346 DKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLYDVEKAIIPEFSIH- 404
Query: 315 YAPLIMGCDIAEEGGDNTVVVL 336
+G D + + + +
Sbjct: 405 GQRCYIGIDYSMMSDNTAIAFV 426
>gi|145514572|ref|XP_001443191.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410569|emb|CAK75794.1| unnamed protein product [Paramecium tetraurelia]
Length = 1510
Score = 47.2 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 26/189 (13%), Positives = 52/189 (27%), Gaps = 18/189 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
I A G GKT + + +L + P V+ +A LK + W L +
Sbjct: 744 ILIGAPTGSGKTIMAEFAMLRVFKQSPQFKVVYIAP----LKAIAKERLKDWTKRLKEIN 799
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
++ + + + L + + + R+++ +I DE
Sbjct: 800 KNVLELTGDYTPDLQALLKAHVLITTPEKWDGISRSWNNREYVR-------QTCLLIFDE 852
Query: 200 ASGTPDVINLGILGFLT-------ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ ++ + N I S F + F+
Sbjct: 853 IHLLGQDRGQVLEVIVSRMNSLSYDTNKKTRMIGLSTAMANGLDVSNWFGVKKGRFYNFK 912
Query: 253 IDTRTVEGI 261
R V
Sbjct: 913 PSCRPVPVT 921
>gi|150397098|ref|YP_001327565.1| hypothetical protein Smed_1896 [Sinorhizobium medicae WSM419]
gi|150028613|gb|ABR60730.1| protein of unknown function DUF264 [Sinorhizobium medicae WSM419]
Length = 443
Score = 47.2 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 52/455 (11%), Positives = 121/455 (26%), Gaps = 68/455 (14%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+ + + G GKT + ++ PG + K
Sbjct: 6 LTEKQREANRLLAGPARNIMLRGGSRSGKTFVLCRALIQRAINAPGSRHVIFRFRFNHAK 65
Query: 122 TTLWAE-VSKWLSLLPNKHWFEMQSLSLH-PAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
T++W++ + K L+L + P S + L + + + Y
Sbjct: 66 TSVWSDTLPKVLALCFPSVRVRFDKTDFYVALPNGSQIWIAGLDDKERVEKILGQEY--- 122
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM-----TSNPRRLS 234
+ + + + + E + + + + R+ + + P +L
Sbjct: 123 ---ATLYFNESSQIPWASVEMAMSRLAQKCELAPAIAAATGRRYLALKAYFDCNPPSKLH 179
Query: 235 GKFYEIFNKPL----------DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
F K +D+ Q++ P + ++A S R+
Sbjct: 180 WSFQMFRAKMKPGTKEKLAKPEDYAEMQVNPADNSENLPPEYFEVLASM---SAPKRLRF 236
Query: 285 C-GQFPQQDIDSFIPLNIIEEALNREPCPDPY----------APLIMGCDIAEEG----- 328
G++ + + L +A + + P +++ D +
Sbjct: 237 EAGEWASEVSGALWALED-RKAPDGKLMPGIDSLRVASAPEMRRIVVSVDPSGTRGDGAG 295
Query: 329 GDNTVVVLR---RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
D +VV G + + + L +++ II + N G
Sbjct: 296 DDIGIVVAGLGIDGHGYILEDGTCQLSPEGWGRRAADLYHRHQAHRIIGERNFGGDMVRF 355
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD--WLEFASLINHSGLIQNLKSLK 443
+ R E + + + +++
Sbjct: 356 TVSTADKTAPFKEVVASRGKA-----VRAEPISALYEQGKVHHVGDFPD---LEDQMC-- 405
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
+G L G S D +D L++ E
Sbjct: 406 --NFTPSGYL--------GEGSPDRADALVWALTE 430
>gi|29374972|ref|NP_814125.1| hypothetical protein EF0333 [Enterococcus faecalis V583]
gi|29342430|gb|AAO80196.1| conserved hypothetical protein TIGR01630 [Enterococcus faecalis
V583]
Length = 418
Score = 47.2 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 42/358 (11%), Positives = 91/358 (25%), Gaps = 24/358 (6%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG KTT A + LM P ++I L ++T + + S F +
Sbjct: 52 RGSFKTTTLAIAIALLMVLFPNKNIIFLRKTDTDVVEIILQVAKVLSSKYFKTLVFALYG 111
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ L + + +L ++ T + + +I D+ D
Sbjct: 112 VELVLLKETTTEIDTNLKTSTRG------TSQLLGMGIYASLTGKHADIVITDDIVNIKD 165
Query: 206 VINLGILGFLTERNANRFWIMTSNPR-RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
++ + + R +G + + + D ID
Sbjct: 166 RVSRAEREKTKLQYQELQNVKNREGRFINTGTPWHKEDAISKMPNVKKFDCYETGLIDKE 225
Query: 265 FHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
+ + + + F I+ N + A +
Sbjct: 226 QRKALQQSM--TPSLFAANYELKHIADSESLFTAPTYID---NTNLIYNGVAHIDAAYGG 280
Query: 325 AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+ T+ ++ I + + +I L + Y+ + N
Sbjct: 281 GDSTAF-TIFKEQKDGTIIGFGKKWQKHVDDCLPEILQLHQYYQAGTFYTETNGDKGYLA 339
Query: 385 DYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL--HVKMADWLEFASLINHSGLIQNLK 440
+L +V + + L + WLE I +
Sbjct: 340 KHLIERSQYVQKYH-----EKTNKFIKISSYLRKYWSRIIWLED----TDKEYIAEIL 388
>gi|242243100|ref|ZP_04797545.1| terminase large subunit [Staphylococcus epidermidis W23144]
gi|242233448|gb|EES35760.1| terminase large subunit [Staphylococcus epidermidis W23144]
Length = 544
Score = 47.2 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 47/350 (13%), Positives = 93/350 (26%), Gaps = 41/350 (11%)
Query: 17 DLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPE 76
DL ++DE + NF F+ +Q + + + +
Sbjct: 42 DLYFNDEQIENLINFAKEFY------------FELDDFQKFLSAFLFLYYKEDNDIFYDQ 89
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI---SVICLANSETQLKTTLWAEVSKWLS 133
F I GRG+GK L + + +S + + +AN+E Q KT+ + E+ +
Sbjct: 90 FF---IMGGRGVGKNGLVSVWSHYFLSDYNPVDEYDISIVANTEKQAKTS-FMEIYNCIE 145
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE--ERPDTFV------ 185
+F + S + + + SK + R +++
Sbjct: 146 RNNLDDYFRRNLKEITGKATNSKLQYHTSAPSSKDGLKDGMVIYDEIHRMESYDIINVFG 205
Query: 186 ---GHHNTYGMAIINDEAS---GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
G + I G D + L + E
Sbjct: 206 SGLGKKDNPREIFIGSNGHVRGGVIDDMLDRANKILKGEVLDDHMFCFL---CKIDDVKE 262
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFI- 297
+ + Q + I LD+++ R E +
Sbjct: 263 ADDPYSWEKANPQFSKPMTPYAKNLYKRVIKEHQKLDNNLKYRAEFMAKRMNLPETDLTE 322
Query: 298 PLNIIEEALNREPCPDP--YAPLIMGCDIAEEGGDNTV-VVLRRGPVIEH 344
+ +E + + G D V ++ R G
Sbjct: 323 SVATADEVYKTNKEIPDLLHKTCVGGLDFGSVRDFTAVGLLFREGDDYYW 372
>gi|228947364|ref|ZP_04109656.1| Terminase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228812305|gb|EEM58634.1| Terminase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
Length = 488
Score = 47.2 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 52/167 (31%), Gaps = 6/167 (3%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL--MSTRPGISVI 111
WQ F+ ++ R GK+TL++ + L+L G V
Sbjct: 108 WQQAFLAATFGFVHKIDGTRKYREAFLVVA--RKNGKSTLSSGICLYLQVADGEGGSEVY 165
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+A E Q K +W+E + + P + A + VL
Sbjct: 166 AVATKEQQAK-IVWSESKRMVKKSPALSKRIKTLVKELTADFNDSVLKPVGSDSDTLDGL 224
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER 218
S + + N Y + + A P ++ + G + E
Sbjct: 225 NVHGASLDEIHAWKDK-NLYDVIVDGTSAREQPLILMITTAGTVRES 270
>gi|253682970|ref|ZP_04863757.1| hypothetical protein CLG_B2294 [Clostridium phage D-1873]
gi|253560896|gb|EES90358.1| hypothetical protein CLG_B2294 [Clostridium phage D-1873]
Length = 611
Score = 47.2 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 52/443 (11%), Positives = 115/443 (25%), Gaps = 88/443 (19%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
++ E +K D + + SF F + + + TP + + +Q + ++
Sbjct: 32 KDNKKAQEKIKKFEDNKKNFIMWASF--FRAYPDIFIDMVTPQDSYFKLYPYQRIMLRLL 89
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA-NSETQLK 121
+ RG K+ + L G+ A S+ Q +
Sbjct: 90 FRYQYCFGTLT------------RGSAKSFVEVLACLLKDIMYAGLKNSITASGSKQQGR 137
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
++ + LP + + + +K + +
Sbjct: 138 DIANEKIDEIERFLPVIAKEIKNKS--------VGKDYVEVEMYNKSWLGV--------V 181
Query: 182 DTFVGHHNTYGMAIINDEASGTP-DVINLGILGFL-----TERN-------ANRFWIMTS 228
+EA +N IL T R + W +T+
Sbjct: 182 GCHNNSRGGRKNQGCIEEAFDVDVQTLNEAILPMFNVKRRTPRGIEDENEFDEQLWYVTT 241
Query: 229 NPRRLSGKFYEIFNKPL----------DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
+ + + + + + + + DS
Sbjct: 242 AGFYDTAICRKQVDMLHQMSKQSSYSGKNTYCVFGSSYELPLYHGLLKQSKVDAITNDSS 301
Query: 279 V----TRVEVCGQFPQQDIDSFIPLNIIEEAL-------NREPCPDPYAPLIMGCDIAE- 326
E + + +F L+ I + I+ D+A
Sbjct: 302 YSQLSFDREYRSIWIKFSDKAFFKLDDINNCRVIKHCELEADFKNHKDDFYIISYDVARQ 361
Query: 327 --EGGDNTVVVLR------RGPVIEHLFDWSKTDLR--------------TTNNKISGLV 364
D ++ + G +++ + + + LV
Sbjct: 362 GGTANDASIATIFRCTPRTDGSYFKNVVAMYSCEDKNKNNNNVNSIMHFKNQCIMLKRLV 421
Query: 365 EKYRPDAIIIDANNTGARTCDYL 387
EKY+ A+++D N G+ DYL
Sbjct: 422 EKYQAKALLVDINGIGSGLLDYL 444
>gi|145514241|ref|XP_001443031.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410392|emb|CAK75634.1| unnamed protein product [Paramecium tetraurelia]
Length = 2116
Score = 47.2 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 26/182 (14%), Positives = 54/182 (29%), Gaps = 4/182 (2%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
I A G GKT + + +L + P ++ +A LK + W L N +
Sbjct: 1350 ILIGAPTGSGKTIMAEFAMLRVFKQSPQFKIVYIAP----LKAIAKERLLDWTKRLKNIN 1405
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
++ + + + L + + + R+++ + ++ E
Sbjct: 1406 KNVLELTGDYTPDLQALLKAHVLITTPEKWDGISRSWNNREYVKQTCLLIFDEIHLLGQE 1465
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
+VI + + N I S F + F+ R V
Sbjct: 1466 RGQVLEVIVSRMNSLSYDTNKKTRMIGLSTAMANGLDVSNWFGVKKGRFYNFKPSCRPVP 1525
Query: 260 GI 261
Sbjct: 1526 VT 1527
>gi|255513283|gb|EET89549.1| DEAD_2 domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 614
Score = 47.2 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 39/283 (13%), Positives = 80/283 (28%), Gaps = 34/283 (12%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
L FSAPR +Q E M+ + + ++A GIGKT L
Sbjct: 6 LFRFSAPRQYQKEMMQDIYGAVSRGQS--------ILVNAPTGIGKTDAAIGATLTYALK 57
Query: 105 RPGISVICLANSETQ---LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
V L +Q L K+ + + Q++ +P
Sbjct: 58 N-SKDVFFLTPKISQHKIAMEALRGIREKFGADIRFVDVVGKQNMCANPEINMITGDAFY 116
Query: 162 ------LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN----------DEASGTPD 205
+ + + T ++ E + ++ + + +
Sbjct: 117 AACDGLVKRNKCSFFTNSKSIDESALAKLSSLSSQGHNSVFSASYDLGLCPYEATARIAK 176
Query: 206 VINLGILG---FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
N+ I G L F + ++ + +D + + T ID
Sbjct: 177 NANVIIAGYSHILNPYTKQTFLRKIGKSLDNAIIIWDESHNLIDIANSYFSVSLTNRTID 236
Query: 263 PSFHEGIIARYGLDSDVTR---VEVCGQFPQQDIDSFIPLNII 302
+ E +D + + + +SFI ++ +
Sbjct: 237 LAQAELARIGSSIDLSYMKFGLSRLRAKMLGAKSESFIGMDDL 279
>gi|58039664|ref|YP_191628.1| Phage DNA packaging protein [Gluconobacter oxydans 621H]
gi|58002078|gb|AAW60972.1| Phage DNA Packaging Protein [Gluconobacter oxydans 621H]
Length = 437
Score = 47.2 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 56/460 (12%), Positives = 116/460 (25%), Gaps = 64/460 (13%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
++ +V + G GKT + V+ P +
Sbjct: 7 LNDSQREAVRLLGGPARHILLRGGSRSGKTFVLVRAVVIRALKAPDS------------R 54
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPA-PWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
++ L + F P W D C + + E+R
Sbjct: 55 HGIFRHRLTALKASVLRDTFPKVMRMCFPQVGWKLDRQDCVVTFPNGSTIFFGGLDDEQR 114
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL------- 233
+ +G + S + L L T +
Sbjct: 115 TEKILGLEFATVYLNEASQISYGARNMLLTRLAQKTGLAVKEYIDANPPSMGHWLYALFE 174
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
SG + D + D + + + L R + G++
Sbjct: 175 SGIEPKSGEPLADRSLYATMILNPQANRDNLSEDYLASLEALPEREKRRFLYGEYQSVVE 234
Query: 294 DSFIPLNIIEE-----ALNREPCPDPYAPLIMGCDIA------EEGGDNTVVVL------ 336
+ L + + A +R +++ D + + D +V+
Sbjct: 235 GALWRLELFQREAAITAQSRADVAARMRRILVSVDPSGAAGPEDYRSDEIGIVVCGIDAA 294
Query: 337 RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
G V+E L + +++ + I+ + N GA + R
Sbjct: 295 GVGHVLEDLSARD--SPAGWAARALRAFDEWGAERIVAERNFGGALVEGTIRS-----VR 347
Query: 397 VLGQKRAVDLEFCRNRRTE---LHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGEL 453
+ V + R E ++ + + L L +G
Sbjct: 348 AHASVKLVTAARGKAARAEPVAAFYEVGRVVHHGRF---TALEDQLC-----HFSVSGY- 398
Query: 454 AIESKRVKGAKSTDYSDGLMYTFAENPPRSDMD-FGRCPS 492
+G +S D +D +++ +E G PS
Sbjct: 399 -------RGPRSPDRADAMVWGLSELMLAGSGGMTGWGPS 431
>gi|116625332|ref|YP_827488.1| hypothetical protein Acid_6277 [Candidatus Solibacter usitatus
Ellin6076]
gi|116228494|gb|ABJ87203.1| hypothetical protein Acid_6277 [Candidatus Solibacter usitatus
Ellin6076]
Length = 212
Score = 47.2 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 14/160 (8%)
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
+ LR V + K+ + P +++DA GA +
Sbjct: 36 TYEFRKTITLRLRHVERIPLATEYVQVVERVAKVMRKLGAQGPAHLVVDATGVGAPVVEL 95
Query: 387 LEMLG-----YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH------SGL 435
L G + V G + R + +L V + E +L + L
Sbjct: 96 LRRAGMGCRLWPVSITGGPAEGYGDGYYRVPKRDLVVGLQVMFEQGALEIAGGLVERAAL 155
Query: 436 IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
++ + ++ + + G E+ + D L
Sbjct: 156 VKEMTDMR-VKMTSRGHEQYEAGSS--GQHDDIVSALSLA 192
>gi|210621036|ref|ZP_03292421.1| hypothetical protein CLOHIR_00364 [Clostridium hiranonis DSM 13275]
gi|210155020|gb|EEA86026.1| hypothetical protein CLOHIR_00364 [Clostridium hiranonis DSM 13275]
Length = 561
Score = 46.8 bits (109), Expect = 0.007, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVI 111
WQ + + + + + R GK+TL A + L+LM G +
Sbjct: 82 WQKALVAAMFGIVHKIDG--TRKYREVILIVARKNGKSTLAAAIGLYLMIADGEGGAEIY 139
Query: 112 CLANSETQLKTTLWAEVSKWLSLLP 136
+A+ + Q K +W E K + P
Sbjct: 140 AVASKKDQAK-IIWLESKKMVKKSP 163
>gi|308172469|ref|YP_003919174.1| phage terminase, large subunit, pbsx family [Bacillus
amyloliquefaciens DSM 7]
gi|307605333|emb|CBI41704.1| phage terminase, large subunit, pbsx family [Bacillus
amyloliquefaciens DSM 7]
Length = 424
Score = 46.8 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 40/315 (12%), Positives = 87/315 (27%), Gaps = 24/315 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
+ + GRG K+T ++ M P +S + + L +++ ++ + + LL
Sbjct: 28 LRYVLKGGRGSSKSTHIGTRIVNDMMKYP-VSTLVVRKVANTLGESVFEQLKEAIDLLGV 86
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
++ + + G D + S + V +A
Sbjct: 87 GEYWHVNKSPMRLTYKPRGNSIIFRGADDP-----AKIKSLKIAKFPVAFLWVEELAEFK 141
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP--LDDWKRFQIDT 255
E + N + L + F+ + P+R + + +
Sbjct: 142 LE-EEISMIENSVLRAELPDGLFYAFYYSYNPPKRKQSWVNKKYESSFVPKNTYIHHSTY 200
Query: 256 RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ---------------DIDSFIPLN 300
I +F E + R E G+ + +
Sbjct: 201 LENPYISKAFKEEAEIVKERNPLKYRWEYLGEALGSGVVPFDNLKIENGCITDEMVRSFD 260
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKI 360
I + ++ PDP A + D + + L W ++ +
Sbjct: 261 NIRQGVDFGYGPDPLAYVRWHYDKKRNSIYAIDELYDQKVSNRELAKWIRSKGYESQEIT 320
Query: 361 SGLVEKYRPDAIIID 375
+ E D + ID
Sbjct: 321 ADSAEPKSIDELKID 335
>gi|254524111|ref|ZP_05136166.1| putative phage terminase, large subunit [Stenotrophomonas sp.
SKA14]
gi|219721702|gb|EED40227.1| putative phage terminase, large subunit [Stenotrophomonas sp.
SKA14]
Length = 556
Score = 46.8 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 51/420 (12%), Positives = 102/420 (24%), Gaps = 55/420 (13%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFK 79
+ + F+ K + WQ + + +
Sbjct: 47 YDADKADRAVRFMEKMPHTKGKWASQKKLLVLEPWQRFIECNLFGWVHKKTG--HRRFRR 104
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
R GK+ A L+L G V A SE Q + + + LP
Sbjct: 105 SYEEIARKNGKSLRLAARGLYLFCADGEAGAEVYSGATSEKQAYEV-FRPAWQMVQKLPA 163
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ +P + + S H +
Sbjct: 164 LRSRFGIEQAGNPKNPGPLFVMEDMSKFETMIGKPGDGSSPHAALVDEYHEHD------- 216
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK-------------- 243
D + + + R I+T+ LSG +E+ +
Sbjct: 217 ------DDHMVDAMETGMGAREQPLLSIITTAGTNLSGPCFEMRSDAVRILRGEVTDETV 270
Query: 244 --------PLDDWKRFQIDTRTVEGIDPSFHEG-------IIARYGLDSDVTRVEVCGQF 288
D W ++ + S E R R + +
Sbjct: 271 FAAIYCIDEGDRWDDPEVLRKANPNFGVSVFEQFLVDMLAKAKRSASKQSAYRTKHLNDW 330
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW 348
+ L + E P +G D+A + VV+L + +
Sbjct: 331 VGAKLAWMNMLAWQRQKRRFEISDFAGCPCWVGVDLASKLDVAAVVLLFEKG--DSFYAI 388
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANN---TGARTCDYLEML---GYHVYRVLGQKR 402
+ + + + + +++ D +I+ A + L+ L G V +
Sbjct: 389 PRFYVPESAVEENEKYQQFLLDDLIVATPGNMTDYAFIEEELKELAAQGIDVRDIAFDPA 448
>gi|18640524|ref|NP_570365.1| DNA packaging protein B [Synechococcus phage P60]
gi|18478754|gb|AAL73303.1| DNA packaging protein B [Synechococcus phage P60]
Length = 258
Score = 46.8 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 27/217 (12%), Positives = 54/217 (24%), Gaps = 12/217 (5%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ ISA RG+GK+ + A VLW++ P ++ ++ S+ + L
Sbjct: 42 QHGPKRLQISAFRGVGKSWITAAFVLWVLFNDPDKKIMVISASKERADNFSIFCQKLILD 101
Query: 134 LLPNKHWFEMQSLSLHPA-PWYSDVLHCSLGIDSKHYSTMCRTYSEER----------PD 182
+ H S + K + P
Sbjct: 102 ISWLNHLGPKDSDQRWSRISFDVGPAKPHQAPSVKSVGITGQMTGSRAHLMIFDDVEVPA 161
Query: 183 TFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
+ + EA + + FL + R +
Sbjct: 162 NSATDMQREKLLQLVTEAESILTPDDDSRILFLGTPQSTFTIYRKLAERSYRPFVWPCTA 221
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
P D + + + + + + DS
Sbjct: 222 YPKDLIRLMRA-LPSPQHWLKTSRKEWRKDPPTDSRF 257
>gi|312872322|ref|ZP_07732392.1| putative phage terminase, large subunit [Lactobacillus iners LEAF
2062A-h1]
gi|311092145|gb|EFQ50519.1| putative phage terminase, large subunit [Lactobacillus iners LEAF
2062A-h1]
Length = 461
Score = 46.8 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 52/354 (14%), Positives = 107/354 (30%), Gaps = 53/354 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+ WQ + ++ + A + + + R GK L W + + G ++
Sbjct: 37 QQWQKDLLKDIMAVNDDGLWTHTKFGYSL----PRRNGKNELVVMREFWGL--KNGEEIM 90
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ + A S W L +++ S+ L D
Sbjct: 91 HTAH-------RISASHSAWEKLCYVLDKAKIEYRSIRAKGQELIELE-----DGGRVQF 138
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
RT + G +I DEA D + ++ + + ++ + P
Sbjct: 139 RTRTSN--------GGLGEGVDLMIIDEAQEYTDDQESSLKYVVSSSHNPQTILLGTPPT 190
Query: 232 RLS-GKFYEIFN-------KPLDDWKRFQI-----------DTRTVEGIDPSFHEG-IIA 271
+S G + F KP + W + + T + F E I
Sbjct: 191 AVSAGTVFPNFRKAVLNGDKPDNGWAEWGVTEKKDVHDVESWYLTNPSLGTIFTERSIRD 250
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G D+D ++ G + + S I E + P + I
Sbjct: 251 EIGPDTDDFNIQRLGLWISYNQKSAISSQDWETLQVKRL---PKLVGKLYVGIKFGNDGA 307
Query: 332 TV---VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID-ANNTGA 381
V + ++ + +R+ N + +++ + ++ID A+ G
Sbjct: 308 NVAMSIAVKTATGKVFIESIDCRSVRSGNQWLLSFLKEANVEKVVIDGASGQGL 361
>gi|257064258|ref|YP_003143930.1| hypothetical protein Shel_15620 [Slackia heliotrinireducens DSM
20476]
gi|256791911|gb|ACV22581.1| hypothetical protein Shel_15620 [Slackia heliotrinireducens DSM
20476]
Length = 481
Score = 46.8 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 44/381 (11%), Positives = 90/381 (23%), Gaps = 60/381 (15%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
I+ R GK+ +W+ + G V+ A+ ++ ++ E+ ++
Sbjct: 62 VGITKPRQNGKSFALRDYAMWMAAV-EGRCVLYTAHHGRTVRK-MFKEMCDFIEAH---- 115
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ ++ + + E + T G ++ DE
Sbjct: 116 -----------GDFRDELDYVYKAGGYEGIYFKGGACIEFQTRTESGGRGGTYQIVVFDE 164
Query: 200 ASGTPDVINLGILGFLTERN--------ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
A IL ++ + ++ T G + +
Sbjct: 165 AQQLTRAQQEAILPAVSAGGEIDEGEGDPQKIYVGTVPGPECQGTVFRELHDRAHADGSA 224
Query: 252 QID--------------------TRTVEGIDPSFHEGII---ARYGLDSDVTRVEVCGQF 288
R + +D E G +
Sbjct: 225 VWWLEWGAVGESLDDVAVDDVDLWYACNPAMGRRISEATVRDERETMSADGFARERLGWW 284
Query: 289 PQQDI--DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEH-- 344
D +P ++ E EP D A + L G
Sbjct: 285 SPTAGLPDLALPSSVFESLAVDEPPRDGRAAYGVKFSADGSEVSLAAARLHDGRAYVEQI 344
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
+ + L ++ K R +ID + D L +G +L A
Sbjct: 345 RREPVRLGLSWLAEWVAE--RKSRGCCCVIDGKSGAQTLADRLGQMGMPKGYILTPSAAQ 402
Query: 405 DLEF------CRNRRTELHVK 419
+ N R +
Sbjct: 403 AISAASTLADYVNERRLEWWR 423
>gi|153811345|ref|ZP_01964013.1| hypothetical protein RUMOBE_01737 [Ruminococcus obeum ATCC 29174]
gi|149832472|gb|EDM87556.1| hypothetical protein RUMOBE_01737 [Ruminococcus obeum ATCC 29174]
Length = 579
Score = 46.8 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 39/361 (10%), Positives = 97/361 (26%), Gaps = 56/361 (15%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVIC 112
Q + ++ + + + GR GK+ LN L + + + C
Sbjct: 78 QCFILGNLNGWRTKTGG--HRRFRTSYVQLGRQNGKSFLNGILAAYYGNFEKYKYGQIYC 135
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A + Q ++ E+ K++ + E + L SK +
Sbjct: 136 TATKKDQ-SLIVFNEIVKFIRS--DHDLDEC------FNIHEHNSTIDCLLTHSKIKALS 186
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPR 231
T + G I DE D + + G + + + ++T+
Sbjct: 187 GDT------KSIDGFR---PYLGIVDEYHAHKNDQMYKLLEGGIKKMKSALISVITTAGF 237
Query: 232 RLSGKFYEIF-----------NKPLDDWKRFQIDTRTVEGIDPSFH-------------- 266
L Y ++ + Q+D ++
Sbjct: 238 DLKSPCYALYEYCVKVLKGIAHNDSQFIYIAQMDETDDMWTPKNWIKANPILQYDLEALE 297
Query: 267 ------EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP-LNIIEE-ALNREPCPDPYAPL 318
E G V+ + Q D ++ + + + A +
Sbjct: 298 NMIPIAETAKEMGGSSLRDFIVKQLNMWIQWTNDVYLKDMELWQNGATKKTLEDFRGQKC 357
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
+G D++ G ++ ++ + + ++ ++ R + + +
Sbjct: 358 YVGLDLSAGGDLTSLAIVFPFLKDDVRKYFVHAHSFIPKRRVEEHIKTDRTEYDLWIRDG 417
Query: 379 T 379
Sbjct: 418 L 418
>gi|75675664|ref|YP_318085.1| phage terminase [Nitrobacter winogradskyi Nb-255]
gi|74420534|gb|ABA04733.1| phage Terminase [Nitrobacter winogradskyi Nb-255]
Length = 537
Score = 46.8 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 51/413 (12%), Positives = 106/413 (25%), Gaps = 42/413 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGI 108
WQ + + + RG KT+L + L + +PG
Sbjct: 45 DPWQERIIRKLYGPRHEDGRRVVRRLVL---LLPRGNRKTSLCGAITLLHLIGPERQPGN 101
Query: 109 SVICLANSETQLKTTLWAEVSK--WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
V+ A++ Q L+ EV+ KH + S
Sbjct: 102 LVVSAASAHEQAME-LFNEVAMIVQHDRRLEKHLAVREYTSSITFKAQRSRYIAVASDGK 160
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
+ + + G ++ PD + + + + +
Sbjct: 161 VQHGKTPNVVIADELHAWEGRAGRVQWEALDSALVKVPDTLMIVATTSGRGQENLAWKTI 220
Query: 227 TSNPRRLSGKFYE-------IFNKPLDDWKRFQIDTRTVEGIDPSFHE--------GIIA 271
+ G+ + + DDW+ + G+ + +
Sbjct: 221 DYAIKVQKGEIDDPATLPVVFMAEEGDDWRDEAVWHALNPGMRHGYPDLTSYRDKAQKAI 280
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE-ALNREPCPDPYAPLIMGCDIAEEGGD 330
D D ++ F+ + + ++ A +G D++
Sbjct: 281 NSPSDRDSFLQFNLNRWLDHSTSPFVEMLVYDQGARAVNLDELKGESCWIGVDLSSNSDL 340
Query: 331 NTVVVLR----RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY 386
VV G ++ F + +LR +K + D II
Sbjct: 341 TAVVACWRDGDDGYQVQPWFFCPEDNLRRRADKDGVAYPAWAADGFIIPTPGNVVDFHVV 400
Query: 387 LEMLGYHVYRVLGQKRAVDLEFCRNRRT-------------ELHVKMADWLEF 426
+ R ++ A D RN + + V MA ++
Sbjct: 401 ENHIRDLCDRFNVREIAFDPHLARNMLSNLLADGLPAVEMRQGWVTMAPAIKE 453
>gi|254418922|ref|ZP_05032646.1| conserved hypothetical protein [Brevundimonas sp. BAL3]
gi|196185099|gb|EDX80075.1| conserved hypothetical protein [Brevundimonas sp. BAL3]
Length = 694
Score = 46.8 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 61/436 (13%), Positives = 114/436 (26%), Gaps = 67/436 (15%)
Query: 84 AGRGIGKT-TLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG GKT +W+ G + + + ++ + A S +S LP
Sbjct: 264 GGRGAGKTLAGASWIADMAERLGAGGRLALIGPTLHDVREVMIAGPSGVMS-LPRWTGVG 322
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
P Y + + + A DE
Sbjct: 323 GDGAVEWRGPEYQPSRRRLVFPNGAEAFVF-------SAEDPDSLRGPQFAAAWADEFCA 375
Query: 203 TP---------------------------DVINLGILGF----LTERNANRFWIMTSNPR 231
D G +G L E + + ++T+ PR
Sbjct: 376 WRNGGETLALLRMGLRLRLPNPDSPAVDADAAQNGGVGAKVARLREPSDSPRLVVTTTPR 435
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + + P F EG+ YG + E+ GQ +
Sbjct: 436 --PTRALKALRAEASCALTHATTRDNGDHLAPGFLEGLERLYG-GTRRAAQELEGQVVEP 492
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPL----IMGCD--IAEEGGDNTVVVL-RRGP--VI 342
++ A P P+ ++G D + G +V + RRG +
Sbjct: 493 -EGGLFTAEMMAAARGEAPVSVEARPVYERVVVGLDPTCSRGGDACGIVAVGRRGETAWV 551
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR 402
+ + + I+ + N G L+ G
Sbjct: 552 LADRSMRGLSPQKWAERAMETARLFGARCIVGEVNQGGDMVEAVLKAAGCGADGENIGFT 611
Query: 403 AVDLEFCRNRRTELHVKMAD--WLEFASLIN-HSGLIQNLKSLKSFIVPNTGELAIESKR 459
AV + R E + + + A + + L + + +GE
Sbjct: 612 AVRASRGKAARAEPVAALYEQGRVRHAGVFAALEEELMELGAEEEGQAAGSGE------- 664
Query: 460 VKGAKSTDYSDGLMYT 475
D +D L++
Sbjct: 665 ----GHWDRADALVWA 676
>gi|325171219|ref|YP_004251191.1| hypothetical protein ViPhICP2p20 [Vibrio phage ICP2]
gi|323512245|gb|ADX87702.1| conserved hypothetical protein [Vibrio phage ICP2]
Length = 508
Score = 46.8 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 22/244 (9%), Positives = 63/244 (25%), Gaps = 24/244 (9%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + V ++ + + +G + K+ + A V W ++ P +++ ++ +
Sbjct: 30 EVHKEVAKWMESNEYDQLLLLPRGHL-------KSHMMALWVAWWVTKHPETTILYISAT 82
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHW-FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ L+ + S + ++W + W + +
Sbjct: 83 SELAEMQLYDIKNIMTSKIYRRYWPDMINEEEGKREKWTNSAIAVDHPKRKMEGVRDFTI 142
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+ G H + G A N +
Sbjct: 143 KTAGLTTNTTGWHAD-----VIISDDVVVPDNAYTEDGRRKVAAAMSQMESILNADGIVK 197
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
++ P D + ++ + G + V + + ++
Sbjct: 198 ACGTRYH-PADIYDTWK-------NQHQPVFDEHGEETGEERPVWDI---FERVVEEDGV 246
Query: 296 FIPL 299
F+
Sbjct: 247 FLWP 250
>gi|257885123|ref|ZP_05664776.1| terminase large subunit [Enterococcus faecium 1,231,501]
gi|257820975|gb|EEV48109.1| terminase large subunit [Enterococcus faecium 1,231,501]
Length = 432
Score = 46.8 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 41/315 (13%), Positives = 91/315 (28%), Gaps = 33/315 (10%)
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ GRG GK++ A ++ + R ++ + + + L+ +++ ++ +
Sbjct: 25 ILNIVCKGGRGSGKSSDIAH-IVTQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIEKQG 83
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
F+ L +Y + ER + + + I
Sbjct: 84 VSRLFKFNKSPLKITYLP-----------RGNYMIFRGAQNPERIKSLKDSKFPFAIGWI 132
Query: 197 NDEASGTPDVINLGI-----LGFLTERNANRFWIMTSNPRRLSGKFYEIFNK--PLDDWK 249
+ A + I G L + +F+ + P+R + + D+
Sbjct: 133 EELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYETSFQPDNTF 192
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN--IIEEALN 307
+ I F + + A + E G + +P + +++
Sbjct: 193 IHHSTYQDNPFISKEFLKEVEATRERNPRRAEWEYDG---KAVGSGVVPFDNLQVKKGSI 249
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKIS 361
+ + + G D D V G K R NK+
Sbjct: 250 SDEMVSNFDNIRNGLDFG-YATDPLAFVRWHYDKKKNGIYAIDEIYGVKISNREFANKVH 308
Query: 362 GLVEKYRPDAIIIDA 376
+ Y D I D+
Sbjct: 309 --AKGYWADEIRADS 321
>gi|319408093|emb|CBI81746.1| phage related protein [Bartonella schoenbuchensis R1]
gi|319408856|emb|CBI82513.1| phage related protein [Bartonella schoenbuchensis R1]
Length = 444
Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 44/350 (12%), Positives = 85/350 (24%), Gaps = 36/350 (10%)
Query: 84 AGRGIGKTTLNAWLVL----WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT A + ++C + L + E+ + +
Sbjct: 30 GGRGSGKTRSFALMAALKGYEYGMGGISGIILCARQFQNSLAESSLQEIKRAIE------ 83
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+Y D + +G + DE
Sbjct: 84 ------TYDFLKDYYCVGESSIKSKDGRISFQFSGLDRNIASIKSMG----RILLCWVDE 133
Query: 200 ASGTPDVINLGILGFLTERNANRF--WIMTSNPRRLSGKFYEIFNKPLDD-WKRFQIDTR 256
A + ++ L E +T NP R + F D K +++
Sbjct: 134 AEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRENAPVERRFRFTKDQNIKGVEVNWS 193
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEALNREPCPD 313
+ + G + + ++ ++ +E D
Sbjct: 194 DNPLFPQKLQRVRLDDLQNRPESYNHIWEGDYLKAVQGAYFQKEMLAAEQEGRVGRVARD 253
Query: 314 PYAPLIMGCDIAEEG--GDNTVVVLRR--GPVIEHLFDWSKTDLRTTNNKISGLVEKYRP 369
P P+ DI G D T + + + G I L + + + Y
Sbjct: 254 PLMPIRAFWDIGGTGAKADATAIWIAQFVGREIRVLDYYEAQGQPLSEHIGWLRCNGYDK 313
Query: 370 DAIIIDANNTGARTC------DYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+++ + L G+ V Q R
Sbjct: 314 ALMVLPHDGATRDRVYNVSFESALNEAGFDTQVVPNQGAGAVKMRIEAVR 363
>gi|304321166|ref|YP_003854809.1| Phage DNA Packaging Protein [Parvularcula bermudensis HTCC2503]
gi|303300068|gb|ADM09667.1| Phage DNA Packaging Protein [Parvularcula bermudensis HTCC2503]
Length = 425
Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 43/351 (12%), Positives = 91/351 (25%), Gaps = 38/351 (10%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + NP + + GRG GKT A + ++ + +
Sbjct: 20 KRALHEWKFYARQDQWNPPGDWTTWLVLGGRGAGKTRTGAEWIAAQIAAGR-RRIALVGE 78
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ + + + S A +D +
Sbjct: 79 TYEDAREVM------------------IDGPSGLCAIGTADSRPHYESSRHRLLWPCGAE 120
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRL 233
D G A +DE + P+ + L + R + T+ R
Sbjct: 121 AHIFSADDPDGLRGHQFEAAWSDELAKWRQPEAAWANLQLGLRLGDRPRQIVTTTP--RP 178
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ N D T + R + + R E+ G+
Sbjct: 179 FPLLRLLMND--DRTVVTHAATTANRAALAETFLTEVTRTYQGTRLGRQELEGEVLDDRE 236
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVVLR--------RGPVI 342
+ ++IE +R +++ D A D +++ I
Sbjct: 237 GALWSWSMIE--ASRLAGAPRCDRVVVAVDPPVTAGPDADECGIIVAGRIEGIEPEAVAI 294
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH 393
H + R + L ++ D ++ + N G + L + +
Sbjct: 295 LHDGSLAGASPRAWAEAVVTLASRFEADRVVAEVNQGGDLVEEMLRLADPN 345
>gi|308451045|ref|XP_003088525.1| hypothetical protein CRE_30323 [Caenorhabditis remanei]
gi|308247019|gb|EFO90971.1| hypothetical protein CRE_30323 [Caenorhabditis remanei]
Length = 490
Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 46/351 (13%), Positives = 93/351 (26%), Gaps = 53/351 (15%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+S R +GKT L +++ L P ++V+ A+ T H
Sbjct: 54 VQLSIPRQVGKTFLVGMIIIALCILTPRLTVLWTAHRTKTATKTFQTMQGMVKKKKIRGH 113
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
++ + A + + + G + DE
Sbjct: 114 LAPGRNDGIRTA-----------NGEQEIRFRNGSVIMFGAREGGFGRGFDEVDIEVFDE 162
Query: 200 ASGTPDVINL--GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD----------- 246
A + + + + P R + E + D
Sbjct: 163 AQILTEKALEDMVAATNQSRQKSGALLFFMGTPPRATDPGEEWLERRNDALEIKPMDQVV 222
Query: 247 --DWKRFQIDTRTVEGIDPSFHEGIIARYG------------------LDSDVTRVEVCG 286
++ + DP E + + D + E G
Sbjct: 223 GLSEDTVYVEFSADKDADPDDMEQLAKANPSFPHRTPLESVMRMRKNLKNEDSFKREAMG 282
Query: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV-VVLR--RGPVIE 343
+ D I + + + +P P L + D+A + +V + R G
Sbjct: 283 IYDALDSGQVI--DDVSWSRVADPASMPIERLTLAIDVAPDRSMASVSLAGRRADGLWSV 340
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
L + K + + + EK R A+++D + + Y V
Sbjct: 341 ELDE-QKRSVEWVSAWVKARAEKNRLHAVVVDEM---TGLVEERKGRNYLV 387
>gi|322435572|ref|YP_004217784.1| Terminase [Acidobacterium sp. MP5ACTX9]
gi|321163299|gb|ADW69004.1| Terminase [Acidobacterium sp. MP5ACTX9]
Length = 555
Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 25/198 (12%), Positives = 57/198 (28%), Gaps = 26/198 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
+ WQ + + + R GK+ L+A + LW++
Sbjct: 80 QPWQCFLLACTFGWVHKTNG--LRRFRTVYLYVPRKNGKSFLSAVIGLWMLMFDGEQQAE 137
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V C A + Q ++ + + F ++L+ +S+
Sbjct: 138 VYCGATTLPQA-EYVFKPAQQIIRKCAGLQTFGAKNLA---------SAIVFPASESRMS 187
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI-NLGILGFLTERNANRFWIMTS 228
+ + + P + DEA + I + + R + T+
Sbjct: 188 AVIGQPPDGSSPS-----------CALLDEAHEWSNDILMSTMQTGMGARLQPLTLVTTT 236
Query: 229 NPRRLSGKFYEIFNKPLD 246
+G + ++ D
Sbjct: 237 AGYNTAGPAKLMQDELQD 254
>gi|213865484|ref|ZP_03387603.1| terminase subunit [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
Length = 64
Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 422 DWLEFASLINHS---GLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAE 478
D + L + + Q+ +++ + E+ R + A D + M+
Sbjct: 3 DIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATMHALFN 62
Query: 479 NP 480
P
Sbjct: 63 EP 64
>gi|126664911|ref|ZP_01735894.1| Type III restriction enzyme, res subunit [Marinobacter sp. ELB17]
gi|126630281|gb|EBA00896.1| Type III restriction enzyme, res subunit [Marinobacter sp. ELB17]
Length = 548
Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 29/213 (13%), Positives = 55/213 (25%), Gaps = 16/213 (7%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q + V H + + G GKT +++ + ++ LA
Sbjct: 150 QRRAAQQVWRHIYRGSSRVLLHMPT-------GAGKTRTAMHIIVRYLIEHEPCVIVWLA 202
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+S L+ A W + L W L D + +
Sbjct: 203 SSAELLEQAADAFEQAWCQM--------GNREVLVKRAWGGGDLDFEGFEDGVLIGGLQK 254
Query: 175 TYSEERPDTFVGHH-NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ ++ DEA ++ LTE A+ I S
Sbjct: 255 LSAYFERHPIPAFRIGRRTKLVVIDEAHQAIAPTYSSVIEQLTETGADNALIGLSATPGR 314
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFH 266
+ ++ D + ++ DP
Sbjct: 315 TWNDISEDSRLSDFFDGNKVTLSIPGYSDPVSF 347
>gi|167634795|ref|ZP_02393114.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0442]
gi|170688565|ref|ZP_02879771.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0465]
gi|254686857|ref|ZP_05150715.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. CNEVA-9066]
gi|254744507|ref|ZP_05202186.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. Kruger B]
gi|167529869|gb|EDR92617.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0442]
gi|170667425|gb|EDT18182.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0465]
Length = 562
Score = 46.4 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVI 111
WQ F+ + ++ R GK+TL++ + L+L G V
Sbjct: 83 WQKAFIGSLFGFIHKIDGTRKYREALLIVA--RKNGKSTLSSGICLYLQIADGEGGAEVY 140
Query: 112 CLANSETQLKTTLWAEVSKWLSLLP 136
+A E Q K +W+E + + P
Sbjct: 141 AVATKEKQAK-IVWSEAKRMVKKSP 164
>gi|323512317|gb|ADX87773.1| hypothetical protein TU12-16_00095 [Vibrio phage ICP2_2006_A]
Length = 508
Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 22/244 (9%), Positives = 63/244 (25%), Gaps = 24/244 (9%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + V ++ + + +G + K+ + A W ++ P +++ ++ +
Sbjct: 30 EVHKEVAKWMESNEYDQLLLLPRGHL-------KSHMMALWAAWWVTKHPETTILYISAT 82
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQ-SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ L+ + S + ++W +M W + +
Sbjct: 83 SELAEMQLYDIKNIMTSKIYRRYWPDMIHEEEGKREKWTNSAIAVDHPKRKMEGVRDFTI 142
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+ G H + G A N +
Sbjct: 143 KTAGLTTNTTGWHAD-----VIISDDVVVPDNAYTEDGRRKVAAAMSQMESILNADGIVK 197
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
++ P D + ++ + G + V + + ++
Sbjct: 198 ACGTRYH-PADIYDTWK-------NQHQPVFDEHGEETGEERPVWDI---FERVVEEDGV 246
Query: 296 FIPL 299
F+
Sbjct: 247 FLWP 250
>gi|149910732|ref|ZP_01899367.1| phage terminase, large subunit, putative [Moritella sp. PE36]
gi|149806172|gb|EDM66151.1| phage terminase, large subunit, putative [Moritella sp. PE36]
Length = 566
Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 35/334 (10%), Positives = 81/334 (24%), Gaps = 24/334 (7%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+ +E +F F + + + WQ+ + + + S + +
Sbjct: 56 YFDEESAQEIVDF--FGFIPCKMDNVVYPSTTLLPWQIFMLCCLFG--MKSKEDGLLKYN 111
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
R GK+TL+ + L+ + A + + LW +S P
Sbjct: 112 YCYAQIARKGGKSTLSGGITLFKLIKGGYAPQAFSAATTREQAAILWNAAKIMISQSPKL 171
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ P + + S+ ++ + + D + ++
Sbjct: 172 RTIFKVLQNEIRLPHKQGIFRP---VASQSHTLDGKEPTISILDEAHAIVDRNLYEVLES 228
Query: 199 EASGTPDVINLGILGF------LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
PD + L I L + + FY I D +
Sbjct: 229 AMGTIPDQLFLIITTAGFILDGLCTQLNRDGKAVLEQQVNQDSYFYLIAEIDEGDDPWLE 288
Query: 253 IDTRTVEGIDPSFHE---------GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
+ + + F ++ ++
Sbjct: 289 ENWYKANLGMAHGLPNIKTLRAQAEMAKISVEKKAGWYTKRLNIFVTGTDSWL-DMDEVK 347
Query: 304 EALNREPCPDPYAPLIMGCDIAEEG-GDNTVVVL 336
++ D + I + D T L
Sbjct: 348 ACRDKSLNIDDFRGKECYIGIDKSQKNDITSFAL 381
>gi|307319529|ref|ZP_07598956.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
gi|306894901|gb|EFN25660.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
Length = 419
Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 52/434 (11%), Positives = 117/434 (26%), Gaps = 68/434 (15%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAE-VSKWLSLLPNKHWF 141
G GKT + ++ PG + KT++W++ + K L+L
Sbjct: 3 RGGSRSGKTFVLCRALIQRAINAPGSRHVIFRFRFNHAKTSVWSDTLPKVLALCFPSVRV 62
Query: 142 EMQSLSLH-PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ P S + L + + + Y + + + + + E
Sbjct: 63 RFDKTDFYVELPNGSQIWIAGLDDKERVEKILGQEY------ATLYFNESSQIPWASVET 116
Query: 201 SGTPDVINLGILGFLTERNANRFWIM-----TSNPRRLSGKFYEIFNKPL---------- 245
+ + + + R+ + + P +L F K
Sbjct: 117 AMSRLAQKCELAPAIAAATGRRYLALKAYFDCNPPSKLHWSFQMFRAKMKPGTKEKLAKP 176
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC-GQFPQQDIDSFIPLNIIEE 304
+D+ Q++ P + ++A S R+ G++ + + L +
Sbjct: 177 EDYAEMQVNPADNSENLPPEYFEVLASM---SAAKRLRFEAGEWASEVSGALWALED-RK 232
Query: 305 ALNREPCPDPY----------APLIMGCDIAEEG-----GDNTVVVLR---RGPVIEHLF 346
A + + P +++ D + D +VV G
Sbjct: 233 APDGKLMPGIDSLRVASAPEMRRIVVSVDPSGTRGDGAGDDIGIVVAGLGIDGHGYILED 292
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ + L +++ II + N G +
Sbjct: 293 GTCQLSPEGWGRRAVDLYHRHQAHRIIGERNFGGDMVRFTVSTADKTAPFKEVVASRGKA 352
Query: 407 EFCRNRRTELHVKMAD--WLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAK 464
R E + + + +++ +G L G
Sbjct: 353 -----VRAEPISALYEQGKVHHVGDFPD---LEDQMC----NFTPSGYL--------GEG 392
Query: 465 STDYSDGLMYTFAE 478
S D +D L++ E
Sbjct: 393 SPDRADALVWALTE 406
>gi|257792356|ref|YP_003182962.1| phage terminase, large subunit, PBSX family [Eggerthella lenta DSM
2243]
gi|257476253|gb|ACV56573.1| phage terminase, large subunit, PBSX family [Eggerthella lenta DSM
2243]
Length = 559
Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 58/447 (12%), Positives = 123/447 (27%), Gaps = 41/447 (9%)
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
C E+ + GRG K++ + V+ + P + L +T ++
Sbjct: 139 PDFCKPHRMIARREITDVWLGGGRGSMKSSYASLEVVNYIEQNPEQHALVLMKYKTAIRD 198
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
+A+V + +L + +EM +L + L G D+ ++
Sbjct: 199 AAYAQVVWAIKMLGLEDEYEMPDSTLRIKKRSTGQLIIFRGCDN-----------AQKIK 247
Query: 183 TFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
+ G+A + + LT + + T NP R + +
Sbjct: 248 SIKVPFGHIGVAWYEEADMFKGMAEIRKVNQSLTRGGNDCIRLYTYNPPRSVHSWINVEM 307
Query: 243 KPLDDWK--RFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ D F + + FH +D E G+ ++ F P
Sbjct: 308 QRRRDAGEPVFTSNYLNAPREWLGDQFHADAEELKRIDLKAYLHEYMGEAVGMGLEVFDP 367
Query: 299 LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNN 358
+ + + L G D + L + + +
Sbjct: 368 -EKVVFREITDEEIAAFDNLKAGQDFGWYPDPWAFTLSEWRQNTRTLLTFREDGANKLHP 426
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
G K + G ++ + A + N R
Sbjct: 427 ---GEQAKRIRALLTWRDTPDGDPVYHHIPVRSDDAAPE---AIAAQRDAGINAREAGKG 480
Query: 419 KMADW-----------LEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTD 467
M D ++ L +++++ + V GE+ E G
Sbjct: 481 NMRDASYRFVQSSTWVIDPVRCP---KLAAEVRAMQ-YAVNKDGEVLNE--IPDGNDH-- 532
Query: 468 YSDGLMYTFAENPPRSDMDFGRCPSYQ 494
+ D + Y+ R+ + P+ +
Sbjct: 533 WVDAVRYSLMPIVRRARGAYRATPAEE 559
>gi|54022003|ref|YP_116245.1| putative phage terminase [Nocardia farcinica IFM 10152]
gi|54013511|dbj|BAD54881.1| putative phage terminase large subunit [Nocardia farcinica IFM
10152]
Length = 582
Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 44/318 (13%), Positives = 76/318 (23%), Gaps = 59/318 (18%)
Query: 51 PRSWQLEFMEVVD---AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL--MSTR 105
P SWQ+ ++ H + + R GK+TL + ++L
Sbjct: 87 PDSWQVAYILAPAFGWVHLDEDFGIYVRIIRTLYVELPRKNGKSTLAGGIGIYLTAADGE 146
Query: 106 PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID 165
G VI A Q ++A + P +L H P+ + ++H
Sbjct: 147 EGAQVIAAATRLDQA-QFVFAPIKLLAEKSP--------ALRKHVTPYKAKIVHNRTASY 197
Query: 166 SKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
+ + H I DE + + T +
Sbjct: 198 FQPV-----------ANAGDAQHGADLHGGIVDELHLHKTNELVEAIETGTGSRTQPLIV 246
Query: 226 MT---------SNPRRLSGKFYEIFNKPLDDWKRFQIDT---RTVEGIDPSFHEGII--- 270
+ R G ++ L D + + EG DP E
Sbjct: 247 FITTADDSRKETPYDRKRGLVEQLARGVLKDATTYGVIWAADENAEGFDPYSEEAQRAAN 306
Query: 271 -------------------ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
+ D R G +Q + A +
Sbjct: 307 PGFGISPTRAFLRQAAVKAQQSPADDASYRRLHLGIRTKQAVKYLDIEAWDRNASIVDEE 366
Query: 312 PDPYAPLIMGCDIAEEGG 329
G D+A
Sbjct: 367 RLRGRACYGGLDLAATSD 384
>gi|30260628|ref|NP_843005.1| prophage LambdaBa04, terminase, large subunit, putative [Bacillus
anthracis str. Ames]
gi|47525737|ref|YP_017086.1| prophage lambdaba04, terminase, large subunit [Bacillus anthracis
str. 'Ames Ancestor']
gi|49183471|ref|YP_026723.1| prophage LambdaBa04, terminase, large subunit [Bacillus anthracis
str. Sterne]
gi|65317890|ref|ZP_00390849.1| COG4626: Phage terminase-like protein, large subunit [Bacillus
anthracis str. A2012]
gi|165870657|ref|ZP_02215310.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0488]
gi|229602404|ref|YP_002865072.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0248]
gi|254724931|ref|ZP_05186714.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A1055]
gi|254725936|ref|ZP_05187718.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A1055]
gi|254738918|ref|ZP_05196620.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. Western North America USA6153]
gi|254756237|ref|ZP_05208266.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. Vollum]
gi|254762056|ref|ZP_05213905.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. Australia 94]
gi|30253996|gb|AAP24491.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
phage lambda Ba01]
gi|47500885|gb|AAT29561.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. 'Ames Ancestor']
gi|49177398|gb|AAT52774.1| prophage LambdaBa04, terminase, large subunit, putative [Bacillus
anthracis str. Sterne]
gi|164713491|gb|EDR19015.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0488]
gi|229266812|gb|ACQ48449.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0248]
Length = 562
Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
W K LE WQ F+ + ++ R GK+TL++ +
Sbjct: 73 WAGKPIDLEL------WQKAFIGSLFGFIHKIDGTRKYREALLIVA--RKNGKSTLSSGI 124
Query: 98 VLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
L+L G V +A E Q K +W+E + + P
Sbjct: 125 CLYLQIADGEGGAEVYAVATKEKQAK-IVWSEAKRMVKKSP 164
>gi|160932962|ref|ZP_02080351.1| hypothetical protein CLOLEP_01804 [Clostridium leptum DSM 753]
gi|156868036|gb|EDO61408.1| hypothetical protein CLOLEP_01804 [Clostridium leptum DSM 753]
Length = 428
Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 44/312 (14%), Positives = 84/312 (26%), Gaps = 43/312 (13%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q + + +HCL GKTT++ W + P ++ + LA
Sbjct: 11 QQKILNAPYSHCLEVNEGTP------------RSGKTTVSVSRFAWYLWNTPDLNHMVLA 58
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
++ Q + + F + + + D L I++
Sbjct: 59 YNQEQAFKLVM-----------DCDGFGLLHIFNGISRMKHDDFGDHLEIETMKGIKRVY 107
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ ++ E + D I R + P
Sbjct: 108 YKGAGKADSHKSFTGMSLGSVYFCEINLLHIDAIQEAFRRTCASR-IRWHIADLNPPAPS 166
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
E+FN W + ID I P E I + + + + G+
Sbjct: 167 HPVISEVFNIQDTQWTHWTID--DNPIITPERKEEIRKTCLKNPYLYKRDWLGERC---- 220
Query: 294 DSFIPLNIIEEALNRE-----PCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW 348
IP +I + + PD + + M D T + G +
Sbjct: 221 ---IPQGVIYSMFDPQRHILSYIPDSESKIEMYFAGDGGLSDATSI----GCYVVTRTMQ 273
Query: 349 SKTDLRTTNNKI 360
++ L
Sbjct: 274 NQFKLYRVAGWY 285
>gi|288957683|ref|YP_003448024.1| terminase [Azospirillum sp. B510]
gi|288958875|ref|YP_003449216.1| terminase [Azospirillum sp. B510]
gi|288909991|dbj|BAI71480.1| terminase [Azospirillum sp. B510]
gi|288911183|dbj|BAI72672.1| terminase [Azospirillum sp. B510]
Length = 598
Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 49/191 (25%), Gaps = 23/191 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR--PGISVIC 112
Q+ + + + I R K+TL A + L+ + G +I
Sbjct: 106 QIFILAAIFGWRRKADG--YRRFSSVYIEMARKGAKSTLTAGVALYCLCCEGEVGPQIII 163
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A + Q + + + + PW V + +
Sbjct: 164 GATTGEQARKVFNPAKKMVERTPALQEAYGVT-------PWARSVTCSENDGYIQTINAK 216
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-VINLGILGFLTERNANRFWIMTSNPR 231
T P I DE D + + R W +T+
Sbjct: 217 GSTQDGHNPH-----------VGILDELHAHKDRALYDVVRSADGARKNPMIWAITTAGY 265
Query: 232 RLSGKFYEIFN 242
++G YE
Sbjct: 266 NMAGVCYEQRT 276
>gi|167640828|ref|ZP_02399087.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0193]
gi|170707219|ref|ZP_02897675.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0389]
gi|177654980|ref|ZP_02936674.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0174]
gi|190567486|ref|ZP_03020399.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis Tsiankovskii-I]
gi|227816663|ref|YP_002816672.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. CDC 684]
gi|167511222|gb|EDR86609.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0193]
gi|170127997|gb|EDS96868.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0389]
gi|172080365|gb|EDT65453.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. A0174]
gi|190561273|gb|EDV15245.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis Tsiankovskii-I]
gi|227003527|gb|ACP13270.1| putative prophage LambdaBa04, terminase, large subunit [Bacillus
anthracis str. CDC 684]
Length = 504
Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
W K LE WQ F+ + ++ R GK+TL++ +
Sbjct: 15 WAGKPIDLEL------WQKAFIGSLFGFIHKIDGTRKYREALLIVA--RKNGKSTLSSGI 66
Query: 98 VLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
L+L G V +A E Q K +W+E + + P
Sbjct: 67 CLYLQIADGEGGAEVYAVATKEKQAK-IVWSEAKRMVKKSP 106
>gi|311110104|ref|ZP_07711501.1| putative phage terminase, large subunit [Lactobacillus gasseri
MV-22]
gi|311065258|gb|EFQ45598.1| putative phage terminase, large subunit [Lactobacillus gasseri
MV-22]
Length = 624
Score = 46.4 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 53/396 (13%), Positives = 105/396 (26%), Gaps = 64/396 (16%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFK 79
+ + F P + G P + WQ ++ N +
Sbjct: 72 YDVDEANRLLRFAK-ICPNVDTGEP----TKLMEWQEFTFALMFGWRDKDNNK---RFTR 123
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLL 135
S RG GKT A LV + + + + Q L+ V+ + +
Sbjct: 124 VIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMK-LFGYVASMMRKI 182
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
F+ + ++ Y + ++ + + +H +
Sbjct: 183 IQIEPFKSYANEVNL---YIQSDQIIMKKNNNVLRAISLE-----AGQYDSYHFRTAIFD 234
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF----NKPLDDWKRF 251
E + I+ I G + N I TS P + F+E DWKR
Sbjct: 235 EIGEVKS-RETISKIISGQVKVENHQFIQISTSYPD-PTVPFHEDQKMIIQAMEQDWKRD 292
Query: 252 QID-----TRTVEGIDPSFHEGIIARYG------------------LDSDV-------TR 281
+ E + DSD+ +
Sbjct: 293 ADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQ 352
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT---VVVLRR 338
+ + +Q DS++ L +E+A++ + D + +G D + + V
Sbjct: 353 TKNLNLWLKQSTDSYLNLKDVEDAVDNDFKID-GREVFIGFDYSMFSDNTALGFVYPYDD 411
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G + I ++
Sbjct: 412 GKFHIEQHSFI---PFQQAGSIEAKEKQDGIAYRNY 444
>gi|296392503|ref|YP_003657387.1| terminase [Segniliparus rotundus DSM 44985]
gi|296179650|gb|ADG96556.1| Terminase [Segniliparus rotundus DSM 44985]
Length = 471
Score = 46.4 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 37/336 (11%), Positives = 74/336 (22%), Gaps = 45/336 (13%)
Query: 50 APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
WQ + + + + +S R +GKT + + L R G++
Sbjct: 35 GFDEWQ----DGLGRLMFSKREDGLYACDTVVVSIPRQVGKTHVMMSALFALCLLRAGLT 90
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V+ A+ K T + + D
Sbjct: 91 VLWTAHRVKTAKETFGSMAALAARDSV----------------RPLVAQVVRGRGDEAVL 134
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ G + DEA + +L M +
Sbjct: 135 FVNGSRILFGAREAGFGRGFADVGVLAFDEAQILGESALDDMLASQNVAENPLTLFMGTP 194
Query: 230 PR------------------RLSGKFY-----EIFNKPLDDWKRFQIDTRTVEGIDPSFH 266
PR G Y + D + + +
Sbjct: 195 PRPKDPGEAFTMFRQEALDGESEGTLYVELSADRGCDVEDREQWRKANPSYPHRTSERAM 254
Query: 267 EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAE 326
+ DS R E G + + + + + AL + P + D++
Sbjct: 255 LRLRKNLLEDS--FRREALGVWDEVSTHQAVVKDSVWRALRADGPESSVRPHALVVDMSH 312
Query: 327 EGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
+ G W+ ++
Sbjct: 313 SREVSVGACWLDGDCAHVEEVWAGVSGSECVEWVAA 348
>gi|56694737|ref|YP_164457.1| DNA packaging terminase subunit 1 [Cercopithecine herpesvirus 2]
gi|52843289|gb|AAU88080.1| UL15 [Cercopithecine herpesvirus 2]
Length = 735
Score = 46.4 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 42/350 (12%), Positives = 84/350 (24%), Gaps = 35/350 (10%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
F+ +V L S + + R GKT L+ +++ GI + A+
Sbjct: 231 FLRLVFEIPLFSDAAVRHFRQRATVFLVPRRHGKTWFIVPLIALSLASFRGIKIGYTAH- 289
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ ++ E+ L + + T
Sbjct: 290 IRKATEPVFDEIDACLRGWFGAARVDHVKGETISFSFPDGSR---------------STI 334
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSG 235
G + DEA+ I+GFL + N ++ ++N + +
Sbjct: 335 VFASSHNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQANCKIIFVSSTNTGKASTS 394
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
Y + + + +
Sbjct: 395 FLYNLRGAADELLNVVTYICDDHMPRVVTHTNATA---------------CSCYILNKPV 439
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT 355
FI ++ D + I+G E D V+ G + T+
Sbjct: 440 FITMDGALRRTADLFLADSFMQEIIGGQSREAADDRPVLTKPAGERFLLYRPSTTTNGGL 499
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
++ V+ A+ TG RA+
Sbjct: 500 MAPELYVYVDPAFTANTR--ASGTGIAAVGRYRDDFIVFALEHFFLRALT 547
>gi|71903662|ref|YP_280465.1| terminase large subunit [Streptococcus pyogenes MGAS6180]
gi|71802757|gb|AAX72110.1| terminase large subunit [Streptococcus pyogenes MGAS6180]
Length = 437
Score = 46.4 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 35/306 (11%), Positives = 77/306 (25%), Gaps = 25/306 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ RG K+ A + + P +++ + K + + + + L H F
Sbjct: 40 VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQLKVTHLF 99
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI-INDEA 200
+ SL + T + +EA
Sbjct: 100 KFNE-SLPEITVKATGQKILFRGLDDELKITSITVDV------------GLLCWAWFEEA 146
Query: 201 SGTPDV-----INLGILGFLTERN-ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--Q 252
+ I G L + + + + F++ F
Sbjct: 147 YQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRADTFSGT 206
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
R E +D Y + R+ G++ + F +++ + E
Sbjct: 207 TTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVD--FDVEKTI 264
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF-DWSKTDLRTTNNKISGLVEKYRPDA 371
G D T++ + V + L+ + I ++
Sbjct: 265 QRVKETSAGMDFGFTQDPTTLICVAVDLVNKELWLYNEHYQKAMLTDHIVKMIRDKNMHK 324
Query: 372 IIIDAN 377
I A+
Sbjct: 325 SYIAAD 330
>gi|117530289|ref|YP_851132.1| terminase [Microcystis phage Ma-LMM01]
gi|117165901|dbj|BAF36209.1| terminase [Microcystis phage Ma-LMM01]
Length = 592
Score = 46.4 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 52/350 (14%), Positives = 95/350 (27%), Gaps = 45/350 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL--------------- 99
Q + V + GR GK+ L + VL
Sbjct: 72 QRWAEQDVTTWVPDRSYVNMVLEC------GRRGGKSVLASICVLYEFYCLINLDNPAKH 125
Query: 100 WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
+ + + I++ +A S Q+ TL+ + + S + S +
Sbjct: 126 YGLLSGSPIAIFVIARSGAQVNETLFGAIRGYASQSAYFKGL-VNSGQIEILTQEIRCQA 184
Query: 160 CSLGIDSKHYSTMCR-TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER 218
++ I +KH ++ YS + Y + D+ + G T
Sbjct: 185 KNIAIYAKHTNSQSLVGYSLKMLVLDEAARFEYNELGESKA----DDIWSNVAKGLSTFG 240
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPLDD----WKRFQIDTRTVEGIDPSFHEGIIARYG 274
N + ++S D ++ D + + Y
Sbjct: 241 NKGKKIAISSAWSEGDYIQNLYKVATRDPRMVAFRLRTWDINLRPEVSEYSLKN-SEDYI 299
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV 334
D +E G SF IEEA+ C D ++ + DI V
Sbjct: 300 RDPVTAALEYEGIR-SSMHGSFFQKEYIEEAVKGLSCLDAHS---IPLDITNGDDTRHYV 355
Query: 335 VLR--------RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
L+ G H+ K D + + +I+D
Sbjct: 356 SLQITRLERLSEGRSYLHVDYGLKKDSAAIA-FVRSTKLEDGRWGVIVDG 404
>gi|30984443|ref|NP_851874.1| DNA packaging terminase subunit 1 [Macacine herpesvirus 1]
gi|28804650|dbj|BAC58054.1| UL15 [Cercopithecine herpesvirus 1]
gi|30844257|gb|AAP41433.1| UL15 [Macacine herpesvirus 1]
Length = 738
Score = 46.1 bits (107), Expect = 0.012, Method: Composition-based stats.
Identities = 42/350 (12%), Positives = 84/350 (24%), Gaps = 35/350 (10%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
F+ +V L S + + R GKT L+ +++ GI + A+
Sbjct: 230 FLRLVFEIPLFSDAAVRHFRQRATVFLVPRRHGKTWFIVPLIALSLASFRGIKIGYTAH- 288
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ ++ E+ L + + T
Sbjct: 289 IRKATEPVFDEIDACLQGWFGSSRVDHVKGETISFSFPDGSR---------------STI 333
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSG 235
G + DEA+ I+GFL + N ++ ++N + +
Sbjct: 334 VFASSHNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQANCKIIFVSSTNTGKASTS 393
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
Y + + + +
Sbjct: 394 FLYNLRGAADELLNVVTYICDDHMPRVVTHTNATA---------------CSCYILNKPV 438
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT 355
FI ++ D + I+G E D V+ G + T+
Sbjct: 439 FITMDGALRRTADLFLADSFMQEIIGGQSREADDDRPVLTKPAGERFLLYRPSTTTNGGL 498
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
++ V+ A+ TG RA+
Sbjct: 499 MAPELYVYVDPAFTANTR--ASGTGVAAVGRYRDDFIVFALEHFFLRALT 546
>gi|260577761|ref|ZP_05845696.1| hypothetical protein HMPREF0297_0275 [Corynebacterium jeikeium ATCC
43734]
gi|258604156|gb|EEW17398.1| hypothetical protein HMPREF0297_0275 [Corynebacterium jeikeium ATCC
43734]
Length = 517
Score = 46.1 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 53/428 (12%), Positives = 107/428 (25%), Gaps = 68/428 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ E + L + + +S R GK + L L + ++
Sbjct: 42 PWQEELLRD----SLLQTDEGMWASREVVVSLARQNGKGEVLVALELVAIYLCGAERIMH 97
Query: 113 LAN---SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A+ + + LW + +L+ D + +
Sbjct: 98 SAHFLDTAMDARDRLWDVIEANPALMEWWEDEHPGVSPRPVMGNGKDAIKFPNKAKIYYR 157
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ +T +I DE P+ + + T+ N + S+
Sbjct: 158 TRTKKTG-----------RGLSFDWLIFDECFDLPNEVYAAMNNT-TKARPNAQKVFISS 205
Query: 230 PRRLSGKFYEIFNKPLDDW--------KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
P F+ W F+ R DP + R
Sbjct: 206 PVNTREHFHGAIFSA-KRWAASDGSDGMLFKEWCRE-PDDDPFDEATWAKANPSLVNEPR 263
Query: 282 VEVCGQFPQQD------IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG------ 329
V + + ++ + ++E E P + I +
Sbjct: 264 PGVQLDEVRSEAASARTSEALLDPFLVETLGQGEWVPRDGDEVSDFVPIVDLSDWSAASE 323
Query: 330 -------DNTVVVL---------------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
D+ V V + L + + D K+ VE
Sbjct: 324 LMPASLGDSCVAVDVTPDGEAVGVVSAAQWGDRLFLSLAPYEEFDRSVVVEKVGSTVELN 383
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA 427
P A+++D + + + L +G + G + + E E +
Sbjct: 384 DPVAVVLDPSGQCSTMVEPLRGVGVEPELLSGGQVSKAYELFLRLWAE-----KRIVHDG 438
Query: 428 SLINHSGL 435
+ L
Sbjct: 439 AQRWLDAL 446
>gi|315925011|ref|ZP_07921228.1| terminase large subunit [Pseudoramibacter alactolyticus ATCC 23263]
gi|315621910|gb|EFV01874.1| terminase large subunit [Pseudoramibacter alactolyticus ATCC 23263]
Length = 556
Score = 46.1 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 48/350 (13%), Positives = 92/350 (26%), Gaps = 38/350 (10%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW--LMSTRPGISVI 111
WQ + ++ + N EVF I R GKT L A + + G +
Sbjct: 78 WQRALLCLIYGIVDEAGNRWFREVF---IIMARKQGKTLLAAAIASYNLYADREYGARIY 134
Query: 112 CLANSETQL---KTTLW------AEVSKWLSLLPNKHWFEMQSLSLHPAPW---YSDVLH 159
A Q L+ E++ + + S P + SD L+
Sbjct: 135 FAAPKLEQASLCYDALYQSILQEPELASMTKKRRTDLYVAASNSSAKPIAFNAKKSDGLN 194
Query: 160 CSLGIDSK--HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA---SGTPDVINLGILGF 214
SLGI + + E + G + I G D +
Sbjct: 195 ISLGIADEIASWRGDGGLKFYEVLRSSFGARTQPLLIGITTAGFENDGIYDELMRRATRV 254
Query: 215 LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARY 273
L + + + ++ +I + PS+ E I +
Sbjct: 255 LKGDSEEKRLLPILYMIDDVDRWDDIEEIKKAAPN-------MGVSVKPSYFEDEIAIAH 307
Query: 274 GLDS--DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP--LIMGCDIAEEGG 329
G S + C I + + + + + + G D+++
Sbjct: 308 GSLSKKAEFLTKYCNIKQNASTAWLTTQTIEQISSDETLRLEDFRNSYCVGGIDLSQTTD 367
Query: 330 DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
+ ++F +I +E+ I
Sbjct: 368 LTACCAVIERQGKLYVFCQFFLP----AERIDEAIERDGVPYRIYVERGL 413
>gi|298385368|ref|ZP_06994926.1| bacteriophage terminase large subunit [Bacteroides sp. 1_1_14]
gi|298261509|gb|EFI04375.1| bacteriophage terminase large subunit [Bacteroides sp. 1_1_14]
Length = 622
Score = 46.1 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 49/373 (13%), Positives = 105/373 (28%), Gaps = 33/373 (8%)
Query: 8 NPETEQKLFDLMWSDEIKLSFSNFVL-HFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHC 66
NP+ K+ + + F + + + G F R Q F+E ++
Sbjct: 6 NPDDRLKVIEQFVRIRSREDFPFWAATFVYIKNKGGGEDVLFRLTRP-QRRFVERLEKLR 64
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP-GISVICLANS---ETQLKT 122
+ + + R G +T + + WL G++ + +A+ ++K
Sbjct: 65 IAGK------PIRIILLKARQWGGSTTSQLYMAWLQLLHKIGLNSLIIAHQGAGSDEIKD 118
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAP-WYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
+ K+ + +K S ++ + K R
Sbjct: 119 MFDRMIKKYPVEMLHKIDELYNENEPKLVGVGKSGSIYRVPQRNCKIKIGTAERPDSCRG 178
Query: 182 DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK-FYEI 240
+ H + E D++ G L + + T+N Y
Sbjct: 179 GDYNLVHLSEVGIWKATEGKKPEDIVRSACSGILLKPYTMIVYESTANGTGNFFHREYTA 238
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN 300
K ++ + +E +F +SD + + +
Sbjct: 239 AKKGDSQFEAMFVSWFDIEQYTLAF----------NSDKEKQGFAEWLYKNRNNENTSSE 288
Query: 301 IIEEALNREPCPDPYAPLI-MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
E + A L + IAE N G + D+ +
Sbjct: 289 REECGKYLWWLWEKGATLEAINWYIAERRKYN-----DHGQMAAEF---PSDDIEAFVHS 340
Query: 360 ISGLVEKYRPDAI 372
+ + +KY+ DA+
Sbjct: 341 GARVFDKYKVDAM 353
>gi|320006266|gb|ADW01295.1| phage terminase-like protein large subunit [Lactobacillus phage
Sha1]
Length = 632
Score = 46.1 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 42/322 (13%), Positives = 90/322 (27%), Gaps = 46/322 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PG 107
WQ M ++ + + +S RG GKT L A + +
Sbjct: 99 MPWQKFIMAMLIGWRNDDGGK---RFSRAIVSVARGQGKTYLMAIITAYSYLIESLGLSN 155
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + + Q L + L+ + F + + + L +
Sbjct: 156 QDYLVSSINYKQTSKIL-GYIKSMLAKIATIEPF---KTLIKDSGLDTRTLSSQADQVTM 211
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + H T + E I+ + G + RN I T
Sbjct: 212 SKTNNKLRAISHEAGQYDSFHFTTAIFDEIGEVKT-RQKISKIVSGQVKVRNKQFIQIST 270
Query: 228 SNP-------RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG------ 274
+ P + L D + + + +D ++ + +
Sbjct: 271 AYPDPTVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDNLDETYKPDMWVKSNPLLDLP 330
Query: 275 -------------LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
DSD + + + +Q +DSF+ L +E+A+ D
Sbjct: 331 SQREVLLNGLTDKRDSDALSGTLNDFQNKNLNLWLEQSVDSFLKLPDVEKAIVPSFSFD- 389
Query: 315 YAPLIMGCDIAEEGGDNTVVVL 336
+ +G D + + + +
Sbjct: 390 DRQVYIGFDYSMFSDNTALAFV 411
>gi|296535576|ref|ZP_06897757.1| terminase large subunit [Roseomonas cervicalis ATCC 49957]
gi|296264092|gb|EFH10536.1| terminase large subunit [Roseomonas cervicalis ATCC 49957]
Length = 571
Score = 46.1 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 31/315 (9%), Positives = 66/315 (20%), Gaps = 39/315 (12%)
Query: 45 LEGFSAP--------RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
L P SWQ + + RG GKTT A
Sbjct: 72 LPNIKGPEAGHPLRLMSWQRFVFANLFGFVERGTTTRRFRQAVVYVP--RGNGKTTFAAP 129
Query: 97 LVLW--LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWY 154
+ L+ + G A + Q + L+ + + P + +
Sbjct: 130 IALYLTFIEGEGGAEGYAAAVTRDQAR-ILFDAAQQMVRRSPKFRQAFGVAERANAIYQE 188
Query: 155 SDVLHC--------SLGIDSKHYSTMCRTYSEERPDTFV------GHHNTYGMAIINDE- 199
SL + + S + G + I+
Sbjct: 189 QTASRFVPVSSDAKSLDGLNVAVAVCDELASHRTAQVYDVLLTAMGKRRHPLLLSISTAT 248
Query: 200 --ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT-R 256
SG + + L + ++ + W + +
Sbjct: 249 GNTSGIGRQMWDYAVRVLIGLKQDERLFALVYTVDDEDDPWDEAS-----WIKANPSWGQ 303
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--P 314
V+ + + ++ + ++ D
Sbjct: 304 AVQPDAIRAIMRQARNNPAQEAAAKTRHLNVWVGA-DEALFSTRAWKACVDPGLTLDALA 362
Query: 315 YAPLIMGCDIAEEGG 329
+ D+A
Sbjct: 363 GQECHVAVDLAATTD 377
>gi|239621737|ref|ZP_04664768.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
gi|239514928|gb|EEQ54795.1| phage protein [Bifidobacterium longum subsp. infantis CCUG 52486]
Length = 470
Score = 46.1 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 33/319 (10%), Positives = 76/319 (23%), Gaps = 34/319 (10%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ + L + + + R GK + + L+L + G+ +
Sbjct: 19 PDKWQRIVL----EGWLATDSKLQWAASDCGCAVPRQNGKNAILEFTELYLAAI-LGMKI 73
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ A+ + + + + + + L
Sbjct: 74 LHTAHEVKTCRKH-FLRMKYYFENARKFPELAELVTYIRAT---NGQEAIVLKNGGSIEF 129
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT--- 227
S ++ DEA D I ++ + +
Sbjct: 130 IARSKSSG---------RGFTVDVLVCDEAQELTDEQMEAIQPAISSAPSGNPLTIYTGT 180
Query: 228 ----SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRV 282
++P + + ++ + E D + L + + +
Sbjct: 181 PTPPTSPGTVFARMRRNAHRDKPPKNLCWFEWAATEIGDVHDQQRWYRYNPSLGTRLLKS 240
Query: 283 EVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI 342
V + + D F A R + A + D+ E T G
Sbjct: 241 VVVSESEKMTPDGF--------ARERLGWWNDQAGALSDIDVDEWAKCKTDKPCMDGYNS 292
Query: 343 EHLFDWSKTDLRTTNNKIS 361
+ + T +
Sbjct: 293 YAVKFSADGANVTLVACVR 311
>gi|144898790|emb|CAM75654.1| DNA maturase B [Magnetospirillum gryphiswaldense MSR-1]
Length = 495
Score = 46.1 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 56/467 (11%), Positives = 113/467 (24%), Gaps = 73/467 (15%)
Query: 54 WQLEFMEVVDAHCLNSVN----NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
W + + H L + + A R GK+T+ W + P +
Sbjct: 14 WNAKLGQSTPPHHLRMARWLARKYKSHHRELLLMAFRNSGKSTIVGLFCAWALLCDPNLR 73
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS--LGIDSK 167
+I LA K + + + + +H W SD + +
Sbjct: 74 IIILAADFALAKK-----MVRNVKRIIERHPLTQGLKPKRRDHWASDQFTVNRPGELRDP 128
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD--VINLGILGFLTERNANRFWI 225
+ + + + D A D I L + +
Sbjct: 129 SMVAKGIGANITGSRAEIVICDDVEVPNTCDSAPKRQDLRERLGEIEYVLVPGGLQLY-V 187
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
T + + + +D + R+ D
Sbjct: 188 GTPHSFYTIYAAQARLEAGEERPFLDGFHRLELPLLDKNGASAWPERFPADKIAGIRRRT 247
Query: 286 GQFPQQDIDSFIPLNIIEEALNRE-----------------PCPDPYAPLIMGCDI---- 324
G +P+NI + L+ + P ++
Sbjct: 248 GPNKFDSQMMLMPVNIADGRLDPDRLRLYQADLVYAEGNGLPVLSLDDKRLVSASCWWDP 307
Query: 325 ---AEEGGDNTVVVL-----RRGPVIEHLFDWSK-------TDLRTTNNKISGLVEKYRP 369
A GD +VV G + + + + +++G V+
Sbjct: 308 AYGAPGKGDASVVAALFTDQDGGYWLHRVQYLTHDPARADEDEATQLCRQVAGFVQDLHL 367
Query: 370 DAIIIDANNTGARTCDYLEM----LGYHVYRVLGQKRAVDLEFCRNR------------- 412
+I ++ N G L GY V R + +
Sbjct: 368 PSICLETNGLGCFLPGLLRRELAKAGYPCAVVEVASRKAKDQRIIDAFDAVLAAGALSVH 427
Query: 413 RTE----LHVKMADWLEFASLINH--SGLIQNLKSLKSFIVPNTGEL 453
R+ +M +W + + L + + TG+L
Sbjct: 428 RSVWATPFVAEMREWQPGGKCRDDGLDAVAGCLLAQPVRLGRPTGKL 474
>gi|167754216|ref|ZP_02426343.1| hypothetical protein ALIPUT_02509 [Alistipes putredinis DSM 17216]
gi|237711925|ref|ZP_04542406.1| predicted protein [Bacteroides sp. 9_1_42FAA]
gi|167658841|gb|EDS02971.1| hypothetical protein ALIPUT_02509 [Alistipes putredinis DSM 17216]
gi|229454620|gb|EEO60341.1| predicted protein [Bacteroides sp. 9_1_42FAA]
Length = 529
Score = 46.1 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 29/317 (9%), Positives = 75/317 (23%), Gaps = 36/317 (11%)
Query: 90 KTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
K+ + + ++ I + + LK + W + K W + +
Sbjct: 82 KSYIGSVWLVSSCIRFENIRAVVARKTLKSLKESTWNTI-----KSILKDWGLKEDTN-- 134
Query: 150 PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209
+ + L +L + M F ++ + DE S +
Sbjct: 135 ---YKINNLEGTLTFWNDSVIIMKEMADIPSDPNFERFGSSEYTIAMVDEVSEISERAVE 191
Query: 210 GILGFLTERN----ANRFWIMTSNPRRLSGKFYEIFNKPLDDW-------KRFQIDTRTV 258
+ L R ++T+NP ++ D
Sbjct: 192 VLFSRLRWRTHETFKTPRMLLTTNPT-INWVRSRFVQDENGDKVICREGEAYIPFSVFDN 250
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQF--PQQDIDSFI-----PLNIIEEALNREPC 311
I D + G + + + + +++ +
Sbjct: 251 PNIAFRQVYEAALNKIRDQATKERLLYGNWDFVEANDMAIYNSFDGSRHLVTGLKEKAYD 310
Query: 312 PDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT------DLRTTNNKISGLVE 365
P + ++A + + + + L + + K+ L
Sbjct: 311 PTKPLITVWDFNVAPQMSVLSAQIDYENRKVYILEEILGKPEEKENNTPALARKVR-LKL 369
Query: 366 KYRPDAIIIDANNTGAR 382
+D +
Sbjct: 370 YRDKHIGGVDVTGDPSG 386
>gi|308068673|ref|YP_003870278.1| flagellar GTP-binding protein [Paenibacillus polymyxa E681]
gi|305857952|gb|ADM69740.1| Flagellar GTP-binding protein [Paenibacillus polymyxa E681]
Length = 480
Score = 46.1 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 3/118 (2%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
S T PE Q++ + + E++ + L P + W+ F E
Sbjct: 203 SSLESTWPEPLQEICERVLEQEVERDLLEYWLEQVYVRRSAHPFAPET--FDWEQAFREE 260
Query: 62 VDAHCLNSVNNPNPEVFK-GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
V + ++ + K ++ G+GKTT A L + +++
Sbjct: 261 VASFIQTRLDKGISKDTKIVYVAGPTGVGKTTTIAKLAAEQLFKHHRKVGFITSDTYR 318
>gi|219563199|ref|YP_002455791.1| terminase large subunit [Lactobacillus phage Lv-1]
gi|215536966|gb|ACJ68903.1| terminase large subunit [Lactobacillus phage Lv-1]
Length = 634
Score = 46.1 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 50/459 (10%), Positives = 121/459 (26%), Gaps = 69/459 (15%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
R +PE F + + NF P G PL +Q + +
Sbjct: 67 RRQKEDPE-----FKYHYDLNKARAILNFAKLV-PDVNAGVPLPLV----DFQKAILCSI 116
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST----RPGISVICLANSET 118
A + +S R GKT + A L + + +A +
Sbjct: 117 VAWRDE---KDRVRYVRATLSMARTNGKTYIAAILAAFYFLIEANDTYNRKYLFVAPTTD 173
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQ---------SLSLHPAPWYSDVLHCSLGIDSKHY 169
Q + + + + F+ + + + + ++ S
Sbjct: 174 QSR-VGFDYLRTMFRKMSESPAFKQTFKDQQIDVLTDQIISRVYNNILMRKSYESGQLDS 232
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF----WI 225
+E D G I + P+ + L I + N+ + +
Sbjct: 233 FHYQFAVGDEVGDDKYIGKIRTGNGKITSGQAQEPNHVFLQISTAYPDSNSQFYKDQRLL 292
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE-------GIDPSFHEGI-------IA 271
R + + ++D + P + +
Sbjct: 293 QFVMERDCDRALDDNLCLIWEQDALIEVDKPETWFKSNPIMNLSPEKKDQMLKSLLSERE 352
Query: 272 RYGLDSDV--TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-YAPLIMGCDIAEEG 328
LD + + + + Q ++++ L+ + A+ E + + +G D +
Sbjct: 353 NKMLDGSIEEFQNKSLNLWLQVKKNTYLQLDDVNAAIVPEEPVNIFGRAVYIGFDKSNFS 412
Query: 329 GDNTV--------------VVLRRGPVIEHLFDWSKTDLRTTNNKI-------SGLVEKY 367
D + +++ + + +++ + I G +
Sbjct: 413 DDTALVFVFPYLDGANNQRFYIKQHSWVPLARAQNNIEIKEKQDGINYRDAERKGYCDIA 472
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ + ID D++E V + +
Sbjct: 473 KNEYGYIDDGVIFNWLVDFVEKNHLDVQYFCYDQWGMSR 511
>gi|238855006|ref|ZP_04645335.1| putative phage terminase, large subunit [Lactobacillus jensenii
269-3]
gi|282933800|ref|ZP_06339153.1| putative phage terminase, large subunit [Lactobacillus jensenii
208-1]
gi|313472110|ref|ZP_07812602.1| putative phage terminase, large subunit [Lactobacillus jensenii
1153]
gi|238832377|gb|EEQ24685.1| putative phage terminase, large subunit [Lactobacillus jensenii
269-3]
gi|239529478|gb|EEQ68479.1| putative phage terminase, large subunit [Lactobacillus jensenii
1153]
gi|281302102|gb|EFA94351.1| putative phage terminase, large subunit [Lactobacillus jensenii
208-1]
Length = 634
Score = 46.1 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 50/459 (10%), Positives = 120/459 (26%), Gaps = 69/459 (15%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
R +PE F + + NF P G PL +Q + +
Sbjct: 67 RRQKEDPE-----FKYHYDLNKARAILNFAKLV-PDVNAGVPLPLV----DFQKAILCSI 116
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST----RPGISVICLANSET 118
A + +S R GKT + A L + + +A +
Sbjct: 117 VAWRDE---KDRVRYVRATLSMARTNGKTYIAAILAAFYFLIEANDTYNRKYLFVAPTTD 173
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQ---------SLSLHPAPWYSDVLHCSLGIDSKHY 169
Q + + + + F + + + + ++ S
Sbjct: 174 QSR-VGFDYLRTMFRKMSESPAFRQTFKDQQIDVLTDQIISRVYNNILMRKSYESGQLDS 232
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF----WI 225
+E D G I + P+ + L I + N+ + +
Sbjct: 233 FHYQFAVGDEVGDDKYIGKIRTGNGKITSGQAQEPNHVFLQISTAYPDSNSQFYKDQRLL 292
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE-------GIDPSFHEGI-------IA 271
R + + ++D + P + +
Sbjct: 293 QFVMERDCDRALDDNLCLIWEQDALIEVDKPETWCKSNPIMNLSPEKKDQMLKSLLSERE 352
Query: 272 RYGLDSDV--TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-YAPLIMGCDIAEEG 328
LD + + + + Q ++++ L+ + A+ E + + +G D +
Sbjct: 353 NKMLDGSIEEFQNKSLNLWLQVKKNTYLQLDDVNAAIVPEEPVNIFGRAVYIGFDKSNFS 412
Query: 329 GDNTV--------------VVLRRGPVIEHLFDWSKTDLRTTNNKI-------SGLVEKY 367
D + +++ + + +++ + I G +
Sbjct: 413 DDTALVFVFPYLDGANNQRFYIKQHSWVPLARAQNNIEIKEKQDGINYRDAERKGYCDIA 472
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ + ID D++E V + +
Sbjct: 473 KNEYGYIDDGVIFNWLVDFVEKNHLDVQYFCYDQWGMSR 511
>gi|282932696|ref|ZP_06338109.1| putative phage terminase, large subunit [Lactobacillus jensenii
208-1]
gi|281303206|gb|EFA95395.1| putative phage terminase, large subunit [Lactobacillus jensenii
208-1]
Length = 634
Score = 46.1 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 50/459 (10%), Positives = 121/459 (26%), Gaps = 69/459 (15%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
R +PE F + + NF P G PL +Q + +
Sbjct: 67 RRQKEDPE-----FKYHYDLNKARAILNFAKLV-PDVNAGVPLPLV----DFQKAILCSI 116
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST----RPGISVICLANSET 118
A + +S R GKT + A L + + +A +
Sbjct: 117 VAWRDE---KDRVRYVRATLSMARTNGKTYIAAILAAFYFLIEANDTYNRKYLFVAPTTD 173
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQ---------SLSLHPAPWYSDVLHCSLGIDSKHY 169
Q + + + + F+ + + + + ++ S
Sbjct: 174 QSR-VGFDYLRTMFRKMSESPAFKQTFKDQQIDVLTDQIISRVYNNILMRKSYESGQLDS 232
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF----WI 225
+E D G I + P+ + L I + N+ + +
Sbjct: 233 FHYQFAVGDEVGDDKYIGKIRTGNGKITSGQAQEPNHVFLQISTAYPDSNSQFYKDQRLL 292
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE-------GIDPSFHEGI-------IA 271
R + + ++D + P + +
Sbjct: 293 QFVMERDCDRALDDNLCLIWEQDALIEVDKPETWSKSNPIMNLSPEKKDQMLKSLLSERE 352
Query: 272 RYGLDSDV--TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-YAPLIMGCDIAEEG 328
LD + + + + Q ++++ L+ + A+ E + + +G D +
Sbjct: 353 NKMLDGSIEEFQNKSLNLWLQVKKNTYLQLDDVNAAIVPEEPVNIFGRTVYIGFDKSNFS 412
Query: 329 GDNTV--------------VVLRRGPVIEHLFDWSKTDLRTTNNKI-------SGLVEKY 367
D + +++ + + +++ + I G +
Sbjct: 413 DDTALVFVFPYVDGANNQRFYIKQHSWVPLARAQNNIEIKEKQDGINYRDAERKGYCDIA 472
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ + ID D++E V + +
Sbjct: 473 KNEYGYIDDGVIFNWLVDFVEKNHLDVQYFCYDQWGMSR 511
>gi|269120042|ref|YP_003308219.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
ATCC 33386]
gi|268613920|gb|ACZ08288.1| phage terminase, large subunit, PBSX family [Sebaldella termitidis
ATCC 33386]
Length = 430
Score = 46.1 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 41/332 (12%), Positives = 96/332 (28%), Gaps = 22/332 (6%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
R K+ A + + P +++ + LK + + ++ ++ L K ++E
Sbjct: 46 KGSRASKKSKTTAINFIHNIMKYPDANLLVVRKVFRTLKDSCFTDLKWAINRLKVKDYWE 105
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
++ L + G+D T + I +
Sbjct: 106 IKESPLEMTYKPTGQKILFRGLDDPMKITSITVET-----------GVLCWCWIEEAYEI 154
Query: 203 TPDVINLGILGFLTERNA----NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
T + + + + + + + F+ D + +
Sbjct: 155 TKEKDFDMLNESIRGEVPENLYKQITLTFNPWNQGHWLKKRFFDVEDSDIMAKTTNYQCN 214
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
E +D S + + RV G++ ++ I N E + E
Sbjct: 215 EFLDESDKKLFEDMKVKNPRRYRVAGLGEW--GIVEGLIYENWEEREFDIEKLLSRTDIK 272
Query: 319 IM-GCDIAEEGGDNTVVV--LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
G D + + + + I ++FD +N KI ++ I
Sbjct: 273 TAFGLDFGYTNDPSGLFCGAVDKANKIIYVFDEFYKK-GLSNRKIYEEIKIKGYSKERIR 331
Query: 376 ANNTGARTCDYL-EMLGYHVYRVLGQKRAVDL 406
A+ ++ D L G + K +++
Sbjct: 332 ADCAEPKSIDELKRDFGLKIKGARKGKDSINN 363
>gi|312880761|ref|ZP_07740561.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
gi|310784052|gb|EFQ24450.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260]
Length = 1200
Score = 46.1 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 32/262 (12%), Positives = 69/262 (26%), Gaps = 24/262 (9%)
Query: 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR 105
A W + + V +P + AG G GKT + WL+++
Sbjct: 4 PHRLAAEPWMERLLGDLRPEQRQGVISPRSL---VVVQAGAGTGKTHTLSSRFAWLLASD 60
Query: 106 PGISV------ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
P V + +++ + + +WL P K + + + S +
Sbjct: 61 PTCRVEQILTLTFTEKAAREMRDRIRCRLLQWLEAEPEKLGHLRDAAARIDEGYISTLHA 120
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG--TPDVIN-LGILGFLT 216
+L + + + + P++ + G E + +
Sbjct: 121 FALRVIRESGLVL-----DLDPESRIASPCGEGALFEEMEGAFDRLDPAWFLRLLEDPWR 175
Query: 217 ERNAN-------RFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI 269
+R + + +PRRL+ E + + + I
Sbjct: 176 DRCQDLFGDPAFPRLVNALSPRRLAELVREAAELHGSRDHTPEDLWTRAPFDPVAAADRI 235
Query: 270 IARYGLDSDVTRVEVCGQFPQQ 291
R G
Sbjct: 236 AQALEPRLREIRNLWDGDLLPS 257
>gi|196037629|ref|ZP_03104940.1| putative phage terminase, large subunit [Bacillus cereus
NVH0597-99]
gi|196031871|gb|EDX70467.1| putative phage terminase, large subunit [Bacillus cereus
NVH0597-99]
Length = 574
Score = 46.1 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 42/426 (9%), Positives = 96/426 (22%), Gaps = 43/426 (10%)
Query: 18 LMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
+W D K + + F KG +WQ F V + + V
Sbjct: 42 DIWFDVEKANAMIYFTETFLKHAKGKWAGQPLILETWQKFFFANVYGWQKYNDDGKAVRV 101
Query: 78 FKGA-ISAGRGIGKTTLNAWLVLWLMSTR--PGISVICLANSETQLKTTLWAEVSKWLSL 134
+ A + + GKT + ++ M G + AN+ Q + ++ +
Sbjct: 102 IRTAYLQVPKKNGKTIMGGSPGIYAMYGEGVKGADIYISANTFEQCQNAAGP-IALTIEN 160
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
P+ ++ D + + T D +
Sbjct: 161 SPD----LRPDTRIY--KGKEDTIKSIKYTFVEDDIKYANTIKVLTKDNAGNEGKNPYIN 214
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS-------------------- 234
++ + + + I ++ +
Sbjct: 215 YFDEVHAQMDREQYDNLRSAQIAQEEPLNIITSTAGKNTGSLGTQIYTYAKEVLKDDKDD 274
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
F I+ + R V +F + +D
Sbjct: 275 SWFMMIYEPNKKFDWTDRDVWRMVNPNMDVSVNMEFLENAFKEAQNNSFNKAEFLSKHLD 334
Query: 295 SF-------IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV-----VVLRRGPVI 342
F + +++ L + ++G D++ V G +
Sbjct: 335 VFVNYAETYFDKDQLDKMLVDDLGDVEGLTCVIGVDLSRRTDLTCVSINIPTFNDNGISL 394
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRP-DAIIIDANNTGARTCDYLEMLGYHVYRVLGQK 401
+ +K YR G + +
Sbjct: 395 LKVKQMYFIPEFGIEDKEQQRNVPYRALAEKGFVTICPGKTVDEEMVNQYVEWVFENFDL 454
Query: 402 RAVDLE 407
R ++ +
Sbjct: 455 RQINYD 460
>gi|289432252|ref|YP_003462125.1| hypothetical protein DehalGT_0302 [Dehalococcoides sp. GT]
gi|288945972|gb|ADC73669.1| conserved hypothetical protein [Dehalococcoides sp. GT]
Length = 420
Score = 45.7 bits (106), Expect = 0.016, Method: Composition-based stats.
Identities = 48/395 (12%), Positives = 106/395 (26%), Gaps = 66/395 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM--STRPGIS 109
R +Q + V N ++ R GK L++ L L L+ +
Sbjct: 6 RPYQQDVARAVLRSIFNQQGQ------TFSVEIARQGGKNELSSQLELLLLTLYMFEPKN 59
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
++ A + + L+ ++++ + ++
Sbjct: 60 LVKCAPTFKPQLNISMMRLKDRLNEA------------GFTDIYHTEGGYIIRLNQARAV 107
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ NT + + DEA + + +
Sbjct: 108 FLSAEP-------SASVVGNTAHLLLEVDEAQDVNKEKYSKEFKPMGATTNVTTVLYGTT 160
Query: 230 PRRLSGKFYEIFNKPLDDWK-----RFQIDTRTVEGIDPSFHEGI---IARYGLDSDVTR 281
S + K F+ D V +P++ R G + +
Sbjct: 161 WDSFSLLEEIKEQNIEKEQKDGLKRHFRYDWEAVAAHNPAYLAYALSEKERLGENHPLFL 220
Query: 282 VEVCGQFPQQDIDSFIP--LNIIEEALNREPCPDPYAPLIMGCDIAEEGG---------- 329
+ F L++++ + P+ + G D+A E
Sbjct: 221 TQYRLLPVSGGGGMFSNEQLDLLKGNHPCQVYPEKGKVYVAGLDLAGEDSQTGGISPTTV 280
Query: 330 ----DNTVVVLRRGP-------------VIEHLFDWSKTDLRTTNNKISGLVEK-YRPDA 371
D++V+ + + + + W T K+ L+ K ++
Sbjct: 281 NLRRDSSVLTIAQLDYTFAKAPYNLPQVRLVCHYSWQGTRHALLYEKLVELLGKVWKCRK 340
Query: 372 IIIDANNTGARTCDYLEM-LGYHVYRVLGQKRAVD 405
+ +DA G +L LG + V Q +
Sbjct: 341 VAVDATGLGQPVASFLRESLGSRILPVPFQTARAE 375
>gi|282554628|ref|YP_003347645.1| putative DNA maturase B [Klebsiella phage KP34]
gi|262410461|gb|ACY66725.1| putative DNA maturase B [Klebsiella phage KP34]
Length = 618
Score = 45.7 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 38/326 (11%), Positives = 87/326 (26%), Gaps = 22/326 (6%)
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
K ++A RG K+TL A +W + ++ ++ +E Q + + L P
Sbjct: 76 PRKRMVAAQRGEAKSTLAALYAVWRLIQDQSCRILIVSGAEKQASDVA-NLIIRMLETWP 134
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ + + +HC L K S C + +
Sbjct: 135 LLCYLKADPTRGDRTSFEGYDVHCDLKPLDKSASVACVGITASLQGKRADLLIPDDIETT 194
Query: 197 NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD--WKRFQID 254
+ + T L I + + P+ + + + + W
Sbjct: 195 KNGLTQTQREQLLTISKDFAAICTHGDTLYLGTPQTKDSIYKTLPGRGFEVRVWPGRIPS 254
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG------QFPQQDIDSFIPLNI------- 301
E + I+ T V G + D D+ I +
Sbjct: 255 IEMEERYGSTLAPYILELIERGYKRTGFGVDGTLGESTDPGRYDEDALIEKELDFGPEGF 314
Query: 302 -IEEALNREPCPDPYAP-----LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRT 355
++ L+ +++ + + + R + +H +
Sbjct: 315 QLQYMLDTTLSDQMRTRIKLSDMLVYSGSQDSSPETFSYIADRRYLYQHEHEGIMGQQMY 374
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGA 381
+ Y+ +++D G
Sbjct: 375 FPAFYGDMHLPYQHKVLVVDPAGCGG 400
>gi|325281231|ref|YP_004253773.1| hypothetical protein Odosp_2613 [Odoribacter splanchnicus DSM
20712]
gi|324313040|gb|ADY33593.1| hypothetical protein Odosp_2613 [Odoribacter splanchnicus DSM
20712]
Length = 572
Score = 45.7 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 31/198 (15%), Positives = 50/198 (25%), Gaps = 19/198 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
GRG GK+ AW + + T P + QL T K L + K +
Sbjct: 28 GRGTGKSAGIAWDINLINRTMPRALTAVTGQTFGQLLTRTLPSTFKLLESMGYKMHVSAK 87
Query: 145 S-----LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
++ P + + D+ + D I DE
Sbjct: 88 DPGNYVINRRPPDHFLQPYEKVMKFDNFISFSNGNGLLLLSQDRAGSARGASVDYEILDE 147
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A LT + R G F +P+ F +
Sbjct: 148 A--------------LTINKQRYDEETSPTNRGNEGIFGPHSPQPIPWHHGFHYSSSMPY 193
Query: 260 GIDPSFHEGIIARYGLDS 277
+ + I Y +
Sbjct: 194 TAEQKWLLDIGNYYEKER 211
>gi|227822449|ref|YP_002826421.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
gi|227341450|gb|ACP25668.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
Length = 454
Score = 45.7 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 51/407 (12%), Positives = 100/407 (24%), Gaps = 43/407 (10%)
Query: 84 AGRGIGKTTLNAWLV---------LWLMSTRPGISVICLA--NSETQLKTTLWAEVSKWL 132
AG +GKT A W R ++ LA S + + +
Sbjct: 41 AGNQLGKTLAGAAEAAMHLTGRYPNWWQGRRFDKPIVMLAGSESYELTRDGVQRLLVGPP 100
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
+ + ++ S + +H S T + + G
Sbjct: 101 LNEADWGTGFIPKATIRATTRRSGASGALDSVTVRHVSGGASTLLFKAYEQGRGKWQANT 160
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ + + DV GI R A + + + LS + D +
Sbjct: 161 VDYVWFDEEPPEDVYFEGITRTNATRGA--IAVTFTPLKGLSNVVARYLMEKSPDREVIT 218
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ E P + II Y R + P P+ E
Sbjct: 219 MTIEDAEHYTPEERQRIIESYPAHEREARTK---GVPALGSGRIFPVT-EEAIRVEPFDI 274
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRG----PVIEHLFDWSKTDLRTTNNKISGLVE--- 365
+ I G D + V + ++ + +
Sbjct: 275 PKHWVQIGGLDFGWDHPFAAVGCAWDRDADVFYVTRIYREREATPIIHAAALKPWGAWLP 334
Query: 366 -KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL-------GQKRAVDLEFCRNRRTELH 417
+ D + D +G + G + A + + +T
Sbjct: 335 FAWPHDGLQHDK-GSGEQLAAQYRAQGLPLLAERATFDDGTNGVEAGLSDMLQRMQTGRW 393
Query: 418 ---VKMADWLEFASLIN--HSGLIQNLKSLKSFIVPNTGELAIESKR 459
A+W E L + +++ + + A+ KR
Sbjct: 394 KVFSTCAEWFEEFRLYHRKDGRIVKE-----RDDLISASRYALMMKR 435
>gi|153810557|ref|ZP_01963225.1| hypothetical protein RUMOBE_00938 [Ruminococcus obeum ATCC 29174]
gi|149833736|gb|EDM88817.1| hypothetical protein RUMOBE_00938 [Ruminococcus obeum ATCC 29174]
Length = 588
Score = 45.7 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 34/350 (9%), Positives = 93/350 (26%), Gaps = 30/350 (8%)
Query: 12 EQKLFDLMWSDEIKLSFSN-FVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSV 70
++ + +W++E F L G+ + WQ + + +
Sbjct: 45 LKEPWPYIWNEEEANGIVEWFSLLRHSKGDLAGQPIVLT---VWQKFNLCQLYGWRERAT 101
Query: 71 NNPNPEVFKGAISAGRGIGKTTLNAWLVLW----LMSTRPGISVICLANSETQLKTTLWA 126
+ GR K+ + A + L+ + A ++ +
Sbjct: 102 GYKRFRQSFIEV--GRKNAKSQMEAGVALYEISVWSTRNQENYEYYTAGTKRDQSKIILN 159
Query: 127 EVSKWLSLLPNKHWFEMQSLSLH--PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
E L+ P K F++ ++ + L G + + E
Sbjct: 160 EAKLMLNNSPLKTKFKLTRDAVFHRKTGSFIKALSKEDGQNGDGTNPAGLILDEYHQHKT 219
Query: 185 VGHHNTYGMAIINDEASG-TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY-EIFN 242
++ + + T+ I+ + + K+ +I
Sbjct: 220 TEFYDLGLGSNTKEPLLMIITTAGMDLTYPCYTQEYTYCSKILNPDIDIDNDKYLVDICE 279
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS---------------DVTRVEVCGQ 287
+D+K + + + + G + ++
Sbjct: 280 VDPEDYKENLENLEDERLWEKANPIRMSYENGREKIRDAWKVAKSIPEKMTAFLTKMLNI 339
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDNTVVVL 336
+ Q + ++ + E D + +G D++ + +V +
Sbjct: 340 WVQAKENGYMDMAKWNACEVCEIPIDTKGMDVYVGFDMSAKIDLTSVAFV 389
>gi|319891801|ref|YP_004148676.1| Phage terminase large subunit [Staphylococcus pseudintermedius
HKU10-03]
gi|317161497|gb|ADV05040.1| Phage terminase large subunit [Staphylococcus pseudintermedius
HKU10-03]
Length = 547
Score = 45.7 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 30/244 (12%), Positives = 64/244 (26%), Gaps = 32/244 (13%)
Query: 10 ETEQKLFDLM-------WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
+ +KL D M + + F+ F + + +Q ++ +
Sbjct: 25 KQYKKLLDDMEHHDKYIYDESKAERPIAFIERFCRHSKGELAGKPLKL-DLFQKAYISAL 83
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQL 120
+ GR GKTT+ + + L++M G V +A+ Q
Sbjct: 84 FGFVDKDTGYRRYTESFFFV--GRKNGKTTMLSAIALYMMIADGESGSEVYSVASKRDQA 141
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
L+ + + + P D+ S Y + +
Sbjct: 142 -NILFDQAHEMIVQSP-------------------DLNKNIRKRKSDLYFAHNFSKMQSL 181
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
++ DE D ++ IM + G ++
Sbjct: 182 AKNSNSLDGLNAHLVVIDELHSIQDRNLYEVMKQSQSARTQPLLIMITTAGTHRGTIFDD 241
Query: 241 FNKP 244
+
Sbjct: 242 LYEY 245
>gi|297618941|ref|YP_003707046.1| hypothetical protein Mvol_0413 [Methanococcus voltae A3]
gi|297377918|gb|ADI36073.1| hypothetical protein Mvol_0413 [Methanococcus voltae A3]
Length = 576
Score = 45.7 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 61/482 (12%), Positives = 116/482 (24%), Gaps = 98/482 (20%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL----VLWLMSTR-PGIS 109
Q E ++ + + L+ + G+G GK + + L ++ L+ T P
Sbjct: 93 QAEILKKMKKNYLS------------TVLVGKGGGKDFMTSLLFNDELIDLILTDIPYTR 140
Query: 110 V--ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
V I +A + + E +W S F+ S + + I S
Sbjct: 141 VDFINIAPNADLAHNVFFREFKQWFSRCKLWKLFKNSEKSPIKINNTFIKIGDLVKITSG 200
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAI--INDEASGTPDVINLGILGFLTERNANRFWI 225
H + + + + M I +A + +
Sbjct: 201 HSRSASFEGTNPKCIVIDEISDENFMNAEKIFYQAKSSVQTRWGKDGKVILISWTR---F 257
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQ-IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
T NP G N +DD F+ E R G+ + +
Sbjct: 258 PTPNPLDDIGYKIYSENLGIDDVFSFKGATWEVNSHRSKFDFEDDYKRNGV---LAKKMY 314
Query: 285 CGQFPQQDIDSFIPLNIIEEA-------------------------------LNREPCPD 313
+ P+ + FI + ++ +
Sbjct: 315 ECKPPE-LSNYFINADKLKNCQVNNLNSKINQQITQQITQKNNQKNNQKCTSIFSWNPIY 373
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
+ D D +++ + H K D K A I
Sbjct: 374 DDTEGKVKLDFKRLNND----IIKNNDLYVHFDLSIKHDSTGIALSYYDKEHKTVNVANI 429
Query: 374 IDANNTGARTCDY-------------------LEMLGYHVYRVLGQKRAVDLEFCRNRRT 414
I+ T DY + + + +
Sbjct: 430 IELKPTNNHIVDYNSLETFITYLKNNFSLKLSFDQFNSQAFIQKFGGKRISKNI------ 483
Query: 415 ELHVKMADWLEFAS-LINHSGLIQN--LKSLKSFIVPNTGELAIESKRVKGAKSTDYSDG 471
E +E LIN I + + + G S D +D
Sbjct: 484 ENWKVFQQLVENNELLINCREDIWEKLFLQIIQHQINENKVIYY------GKNSPDLADC 537
Query: 472 LM 473
++
Sbjct: 538 VI 539
>gi|283455514|ref|YP_003360078.1| gp26 [Bifidobacterium dentium Bd1]
gi|283102148|gb|ADB09254.1| gp26 [Bifidobacterium dentium Bd1]
Length = 480
Score = 45.7 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 54/462 (11%), Positives = 106/462 (22%), Gaps = 70/462 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ ++ V + + +S R GK+TL P +
Sbjct: 33 PWQR-YVADVAGEIDPATGTY--YYDRVILSTPRQCGKSTLIDTEDTRNAQLGPDRKIYY 89
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
LA + + ++ L + +
Sbjct: 90 LAQTGKDAE----KHFKDYVQQLAKSRLAPIACRPRLSNGGM------------EQRFIN 133
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT---------ERNANRF 223
G H T DEA D IL + +
Sbjct: 134 GSFICPLAVTKVAG-HGTQMDKFTIDEAFSLDDETGKLILDGMAPTMNTRLHFTGVQPQI 192
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT---VEGIDPSFHEGIIA-------RY 273
WI ++ S + + + DP + I+ +
Sbjct: 193 WITSTEGTADSTFLNGLLDGLRAGDVPRRTCWFDFGIPADADPEDLQTILKWHPAAGLLW 252
Query: 274 GLD------------SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLI 319
GLD + + D I + + + PD PL+
Sbjct: 253 GLDQLRDFRGQFEGNAAGWARAFGNRRDTGVADRVIDETLWQATVATPIGPDRLDGRPLV 312
Query: 320 --MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
D+ + + +I L E+Y+ +++D
Sbjct: 313 FAAAVDVDATHTSLAAGIRDADGTVTVQLLQVLDGTGRAPGEIMRLCERYK-APLVMDDR 371
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA---SLINHSG 434
A D L V + + ++ + LI H+
Sbjct: 372 GPNADLHDRLRSQADDVGEPV--------IQFVPMQAGDYLAIGQAFVSGLHNRLIRHAT 423
Query: 435 LIQ-NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+Q + + + + + + G S + M
Sbjct: 424 DMQLDESAAQCARTWSGDAWRVTRRGSTGLTSP--LEACMLA 463
>gi|213423446|ref|ZP_03356429.1| terminase, ATPase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 72
Score = 45.7 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 19/64 (29%)
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
I W D R + L E+Y I ID+ G + ++ V +
Sbjct: 8 KFRILERHQWRGMDFRAQADANKKLTEQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFV 67
Query: 399 GQKR 402
Sbjct: 68 YNPN 71
>gi|154482773|ref|ZP_02025221.1| hypothetical protein EUBVEN_00450 [Eubacterium ventriosum ATCC
27560]
gi|149736368|gb|EDM52254.1| hypothetical protein EUBVEN_00450 [Eubacterium ventriosum ATCC
27560]
Length = 614
Score = 45.7 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 37/425 (8%), Positives = 96/425 (22%), Gaps = 75/425 (17%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98
G KG AP WQ E M+ + + K + + +GKT
Sbjct: 39 GSKGGKWNTEKAP--WQREIMDAITDISVE----------KVVVMSAAQMGKTDAFLLNT 86
Query: 99 LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVL 158
+ +++C+ + + +T + ++ ++
Sbjct: 87 IGYYMHYDPCTILCMQPTLSLAET-----------MSKDRLMPMVRDTPALRDKINEKSR 135
Query: 159 HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER 218
I K + + ++ + ++ DE P +
Sbjct: 136 TAGNTIFKK--AFPGGRITMTGANSPTELRSRPIRILLADEIDAYPPTAGAEGDPLILAG 193
Query: 219 -------NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID--------- 262
N T + S E + +++W ++ ++
Sbjct: 194 KRLTTYWNRKEVDTSTPTIKGASRIEMEYEHSTMEEWNVPCPSCGELQPLEWSNLIYKVD 253
Query: 263 -PSFHE----------------GIIARYGLDSDVTR---VEVCGQFPQQDIDSFIPLNII 302
E + V + +V G +F + I
Sbjct: 254 ADGEIESTTYVCAKCGVVHTEVEWKEHFNEGRYVAKYPNRKVRGFHFNSLASTFFGWDKI 313
Query: 303 EEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
+ + + T + L + +++
Sbjct: 314 VKGFIEADQALKKGNIELMKSWVNTELGQTWEEQGEKASKDDLLKRRERYRCEVPDEVIA 373
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR-TELHVKMA 421
+ + G + + + +E+ +
Sbjct: 374 ITAGIDTQDDRFEVEVVGWGVEHE-------------SYGIIYKRIYGDLKQSEVWKNLD 420
Query: 422 DWLEF 426
D+L+
Sbjct: 421 DFLKQ 425
>gi|317473130|ref|ZP_07932428.1| phage terminase [Anaerostipes sp. 3_2_56FAA]
gi|316899354|gb|EFV21370.1| phage terminase [Anaerostipes sp. 3_2_56FAA]
Length = 499
Score = 45.7 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 29/250 (11%), Positives = 70/250 (28%), Gaps = 17/250 (6%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG K++ + VL L+ + + + L+ +++ ++ + L F
Sbjct: 119 PGGRGSTKSSFISLNVLDLIMKNDDMHAVVMRQVADTLRGSVYQQMLWAIEALGLSEDFH 178
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+P + I + + S + P ++G + +
Sbjct: 179 ATV-----SPMEITRISTGQKIYFRGADDPGKVKSIKVPFGYIGI------LWLEELDQF 227
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK-RFQIDTRTVE-- 259
T I + + + NP + G + + K + + +
Sbjct: 228 TGPESVRKIEQSVIRGGEYAYIFKSFNPPKSKGNWANKYIKIPKETRLVTHSTYMDIPKK 287
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ F + ++ E G+ F + I E + + +
Sbjct: 288 WLGKPFLDEAEFLKEVNPAAYDNEYMGEANGNGGQVFDNVTIREI---TDEEIAQFDRIY 344
Query: 320 MGCDIAEEGG 329
G D
Sbjct: 345 NGVDWGWYPD 354
>gi|260665424|ref|ZP_05866271.1| terminase large subunit [Lactobacillus jensenii SJ-7A-US]
gi|260560692|gb|EEX26669.1| terminase large subunit [Lactobacillus jensenii SJ-7A-US]
Length = 634
Score = 45.7 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 50/459 (10%), Positives = 120/459 (26%), Gaps = 69/459 (15%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
R +PE F + + NF P G PL +Q + +
Sbjct: 67 RRQKEDPE-----FKYHYDLNKARAILNFAKLV-PDVNAGIPLPLV----DFQKAILCSI 116
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST----RPGISVICLANSET 118
A + +S R GKT + A L + + +A +
Sbjct: 117 VAWRDE---KDRVRYVRATLSMARTNGKTYIAAILAAFYFLIEANDTYNRKYLFVAPTTD 173
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQ---------SLSLHPAPWYSDVLHCSLGIDSKHY 169
Q + + + + F + + + + ++ S
Sbjct: 174 QSR-VGFDYLRTMFRKMSESPAFRQTFKDQQIDVLTDQIISRVYNNILMRKSYESGQLDS 232
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRF----WI 225
+E D G I + P+ + L I + N+ + +
Sbjct: 233 FHYQFAVGDEVGDDKYIGKIRTGNGKITSGQAQEPNHVFLQISTAYPDSNSQFYKDQRLL 292
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE-------GIDPSFHEGI-------IA 271
R + + ++D + P + +
Sbjct: 293 QFVMERDCDRALDDNLCLIWEQDALIEVDKPETWCKSNPIMNLSPEKKDQMLKSLLSERE 352
Query: 272 RYGLDSDV--TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP-YAPLIMGCDIAEEG 328
LD + + + + Q ++++ L+ + A+ E + + +G D +
Sbjct: 353 NKMLDGSIEEFQNKSLNLWLQVKKNTYLQLDDVNAAIVPEEPVNIFGRAVYIGFDKSNFS 412
Query: 329 GDNTV--------------VVLRRGPVIEHLFDWSKTDLRTTNNKI-------SGLVEKY 367
D + +++ + + +++ + I G +
Sbjct: 413 DDTALVFVFPYLDGANNQRFYIKQHSWVPLARAQNNIEIKEKQDGINYRDAERKGYCDIA 472
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL 406
+ + ID D++E V + +
Sbjct: 473 KNEYGYIDDGVIFNWLVDFVEKNHLDVQYFCYDQWGMSR 511
>gi|332855697|ref|ZP_08436006.1| putative phage terminase, large subunit [Acinetobacter baumannii
6013150]
gi|332870675|ref|ZP_08439393.1| putative phage terminase, large subunit [Acinetobacter baumannii
6013113]
gi|332727323|gb|EGJ58762.1| putative phage terminase, large subunit [Acinetobacter baumannii
6013150]
gi|332732059|gb|EGJ63331.1| putative phage terminase, large subunit [Acinetobacter baumannii
6013113]
Length = 613
Score = 45.7 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 39/290 (13%), Positives = 78/290 (26%), Gaps = 29/290 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
WQ+ M + + I + GK+T A + L+L G
Sbjct: 109 EPWQIFAMVNIFGWIDSDNKR---RFLYVYIEVAKKNGKSTWLAAVALYLAFLDGEMGAE 165
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLP---NKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
V A S Q K ++ + K + P +K E S+ S + S
Sbjct: 166 VYTAATSRDQAK-IVFEDAKKMVEFSPRMCSKFGIEFSQYSVFQTETNSFLKALSQDRGG 224
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW-- 224
+ H T M I + + + + + ++ +
Sbjct: 225 TKDGLNVHAAIIDELHA----HKTADMYDIVANGTAAREEPLILAITTAGDDTTSKCYQE 280
Query: 225 ------IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-------GIIA 271
++ DDW+ ++ + S +E +
Sbjct: 281 RQIVVDVLKGKATHEQYFGIVFCLDRGDDWQDPKVWPKANPNYGVSVNEKYLFSVFEKVK 340
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
+TR + ++ I +I E+ + D + G
Sbjct: 341 VSPKQEGITRQKHLNEWVGAVDGW-IAPSIWEKCYSEVKYEDLNGQIRFG 389
>gi|146312247|ref|YP_001177321.1| phage terminase [Enterobacter sp. 638]
gi|145319123|gb|ABP61270.1| phage Terminase [Enterobacter sp. 638]
Length = 573
Score = 45.7 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 25/195 (12%), Positives = 46/195 (23%), Gaps = 26/195 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--GIS 109
WQ +V + R GK+ A + ++ G
Sbjct: 83 EPWQQFIFCMVFGWLKKKNKMRRFREAYTEVP--RKNGKSLFAAGVGTYMFCADDEFGAE 140
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V C A +E Q ++ LP+ + L
Sbjct: 141 VYCGATTERQA-WKVFKPALMMAQKLPD-----------LRKRFQIKPWAKKLTRPDGSV 188
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEAS-GTPDVINLGILGFLTERNANRFWIMTS 228
+ + DE D + + + R WI+T+
Sbjct: 189 FEPIIGDPGD---------GDSPSCALIDEYHEHLTDALYTTMTTGMGARAQPLAWIITT 239
Query: 229 NPRRLSGKFYEIFNK 243
+ L Y+ +
Sbjct: 240 SGFNLESPCYDKRKQ 254
>gi|229828943|ref|ZP_04455012.1| hypothetical protein GCWU000342_01028 [Shuttleworthia satelles DSM
14600]
gi|229792106|gb|EEP28220.1| hypothetical protein GCWU000342_01028 [Shuttleworthia satelles DSM
14600]
Length = 549
Score = 45.7 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 29/228 (12%), Positives = 62/228 (27%), Gaps = 26/228 (11%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
D+ F+ F + F +Q ++ ++ + EV
Sbjct: 42 DDDRAHRPIEFIEQFC--KQSQGQAGHFLKLELYQKAMLQAAYGFLDDNDHRRYQEVLNI 99
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGI--SVICLANSETQLKTTLWAEVSKWLSLLPNK 138
GR GKTTL + + L+++ +A + Q + E +
Sbjct: 100 V---GRKNGKTTLLSAIQLYMLIADKEGAPECYQIATARDQAMKG-FTECVNMVRQSKTI 155
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ L D + D G H +I++
Sbjct: 156 AK-------------HVRKRQSDLYCDVNMGFIKPLASNTNSLDGLNG-HC----IVIDE 197
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
A+ + + ++ R+ W +T++ F +
Sbjct: 198 LAAIKNRDVYDLMKQSMSSRSQPMLWCITTSGFVRESIFDSQYEYAKG 245
>gi|312374861|gb|EFR22335.1| hypothetical protein AND_15413 [Anopheles darlingi]
Length = 1046
Score = 45.7 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 27/182 (14%), Positives = 57/182 (31%), Gaps = 20/182 (10%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q + + P +++AGRG GK+ L + ++V +
Sbjct: 255 QAKAVAQFIDALAEKQLKPP-----TSLTAGRGRGKSAAM-GLAIAGSIAFGYVNVYVTS 308
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
S L T L+ + K L + + + + ++ ++ +++
Sbjct: 309 PSPENLIT-LFEFILKGFDALEYQEHTDYTIIRSTNPDFNKAIIRINITRNNRQTIQYIS 367
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ +I DEA+ P + +LG F T N +
Sbjct: 368 PTDAHLLNAAD--------LLIIDEAAAIPLPMVKAMLGSYL-----VFMASTINGYEGT 414
Query: 235 GK 236
G+
Sbjct: 415 GR 416
>gi|327197586|ref|YP_004301277.1| gp2 [Brochothrix phage NF5]
gi|296245409|gb|ADH03023.1| gp2 [Brochothrix phage NF5]
Length = 425
Score = 45.7 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 51/427 (11%), Positives = 120/427 (28%), Gaps = 50/427 (11%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
++ GRG GK++ A ++ + R ++ + + + L+ +L+ ++ +
Sbjct: 23 EQILNIVCKGGRGSGKSSDIAHVIT-QLLMRYAVNAVGIRYVDNTLEQSLYEQMKWAIEQ 81
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
H F+ L +Y + ER + + +
Sbjct: 82 QGVTHLFKFNKSPLRITYIP-----------RGNYMIFRGAQNPERIKSLKDSKFPFAIG 130
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWI-----MTSNPRRLSGKFYEIFNKPLDDWK 249
I + A + I L + P+R + +
Sbjct: 131 WIEELAEFKNEEEVTTITNSLLRGELGNGLFYKFFYSYNPPKRKQSWVNKKYETSFQPEN 190
Query: 250 RF--QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN--IIEEA 305
F + I F + + A + E G + +P + +
Sbjct: 191 TFVHHSTYKDNPFIAKEFLKEVEAARERNPRRAEWEYDG---KAIGSGVVPFDNLKVVAG 247
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV----IEHLFDWSKTDLRTTNNKIS 361
+ + + D D V I + ++ +
Sbjct: 248 SITDDMTANFDNVRNAVDFG-YATDPLAFVRWHYDKKHNCIYAIEEYFGQKISNRQFAKW 306
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ Y+ D I D+ ++ L + + RV+G K+ D E +
Sbjct: 307 AQSKGYQSDEIYADSAEP--KSIAELRQE-HSMPRVIGVKKGPDSVEYG----EEWLDDL 359
Query: 422 DW--LEFASLINHSGLIQNLKSLKSFIVPNTG--ELAIESKRVKGAKSTDYSDGLMYTFA 477
D ++ N + + +++ + G + +E K D Y F+
Sbjct: 360 DAIYIDPIRTPN---IAREFENI-DYQTDKDGNPKPRLEDKDNHTI------DATRYAFS 409
Query: 478 ENPPRSD 484
+ ++
Sbjct: 410 RDMRKAA 416
>gi|320590344|gb|EFX02787.1| dead deah box DNA helicase [Grosmannia clavigera kw1407]
Length = 2423
Score = 45.7 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMST-RPGI 108
+E + A N ++F + + G GKT + A L +W RPG
Sbjct: 1160 VLEAIYAERFRFFNPMQTQIFHTLYHSSANVLLGSPTGSGKT-VAAELAMWWAFRERPGS 1218
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ + W L ++ + + + +
Sbjct: 1219 KVVYIAPMKALVRER----IKDWGRRLAGPAGLRLVELTGDNTPDTRTIGEADVIVTTPE 1274
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1275 KWDGISRSWQTRGYVR-------KVSLVIIDEIHLLAGDRGPILEIIVSRMN 1319
>gi|148379681|ref|YP_001254222.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502]
gi|237795044|ref|YP_002862596.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
Ba4 str. 657]
gi|148289165|emb|CAL83259.1| terminase large subunit [Clostridium botulinum A str. ATCC 3502]
gi|229261270|gb|ACQ52303.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
Ba4 str. 657]
Length = 419
Score = 45.7 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 45/350 (12%), Positives = 92/350 (26%), Gaps = 22/350 (6%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+AH FK GRG K++ + ++ + + A ++K
Sbjct: 15 YEAHKDIKKGLHTHYWFK----GGRGSTKSSFISIEIVLGIMRDAQEGKLTNALILRRVK 70
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
TL V + + W+ ++ + +
Sbjct: 71 DTLSESVRDQIKWAIDILG--------VSDEWHIPEAKLTITYKPTGQVIRFKGADNPKK 122
Query: 182 DTFVGHHNTYGMAIINDEASGT--PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
Y I +E + I+ + + + P +
Sbjct: 123 VKSTKVPKGYIKYIWYEEVDEFEGKNKIDTINQSLMRGGPKFFVFYSFNPPESQRNWCNQ 182
Query: 240 IFNKPLDDWKRFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
+ D D R V + F ++ + G + F
Sbjct: 183 EVVETRKDKYVHHSDYRLVPIEWLGEQFIIEAEHMKKVNPAKYEHDYLGAVTGTGGEVFR 242
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--DLRT 355
L I E + + L G D D VL ++
Sbjct: 243 NLTIREL---TDEEIKVFDRLKNGLDFG-YAADPLAYVLMHYDKTRKRLYIFDEIYKVQL 298
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+N+K ++K P + A++ RT + + LG ++ +V+
Sbjct: 299 SNSKAVKEIKKLNPLNKRVIADSAEPRTINEFKTLGLNIKGAKKGPDSVE 348
>gi|301299551|ref|ZP_07205817.1| putative phage terminase, large subunit [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300214155|gb|ADJ78571.1| Terminase large subunit [Lactobacillus salivarius CECT 5713]
gi|300852852|gb|EFK80470.1| putative phage terminase, large subunit [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 627
Score = 45.3 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 38/322 (11%), Positives = 88/322 (27%), Gaps = 51/322 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PG 107
WQ ++ + +S RG GKT L A L+ +
Sbjct: 99 MDWQKFIFCMLFGWR---NLEGRKRFSRAMVSVARGQGKTYLMAILMCYSYFIESLGLSN 155
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + + Q ++ + + + F+ + ++ + + + +
Sbjct: 156 QDYLVSSINFKQT-NKIFGYIKTMMKHIVKTDMFKDYAATV---GFKAQNDQMIMKEKNN 211
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
+ + H T + E + I+ I G + N I T
Sbjct: 212 VLRAIS-----HESGQYDSFHFTTAIFDEIGEVKS-REKISKIISGQVKVPNHQFIQIST 265
Query: 228 SNP----------------------RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF 265
S P R I+ + D +
Sbjct: 266 SYPDPSVPFHEDQKMIQQAMEQDYKRDADNFLGLIWAQDSLDETFKPETWYKSNPLLYLD 325
Query: 266 HEGIIARYG----LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ + G D+D+ + + + + +SF+ L+ IE A+ +
Sbjct: 326 SQKQVLMEGLQDKRDADMLSGNVADFQNKNLNLWLAEATNSFLKLSDIERAIQPNFNIE- 384
Query: 315 YAPLIMGCDIAEEGGDNTVVVL 336
+ +G D + + + +
Sbjct: 385 GRTVYIGYDYSMFSDNTAIAFV 406
>gi|257784380|ref|YP_003179597.1| hypothetical protein Apar_0576 [Atopobium parvulum DSM 20469]
gi|257472887|gb|ACV51006.1| hypothetical protein Apar_0576 [Atopobium parvulum DSM 20469]
Length = 496
Score = 45.3 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 36/252 (14%), Positives = 71/252 (28%), Gaps = 17/252 (6%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E + + +P + R GK+ +W + G+ V+ A++
Sbjct: 42 EAQKHELELYMAKDAKGSPAAETIGAAKPRQNGKSFAARLYGIWCAAIC-GMDVVYSAHN 100
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ + + + L + P +L S + +
Sbjct: 101 ADTV-DEFFDMIVNLFTDDETYPDLAELLLKAYRQPGKQYLLFDCGCYKSGKRAIGRLKF 159
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT---ERNANRFWIMTSNPRRL 233
S II DEA D IL ++ + + +I T
Sbjct: 160 STRTTSK---ARGGTRSLIIIDEAQELTDAQLNAILPTVSASKDGSPQVIYIGTPPDPTC 216
Query: 234 SGKFYEIFNKPLD-----DWKRFQIDTRTVEGIDPSFHEGI----IARYGLDSDVTRVEV 284
G ++ + + + ++V D S E + L S +T V
Sbjct: 217 RGTVFKRMHDTAHSDDPGEAWWLEWAAKSVPKEDTSDEEALDFAYETNPALGSRITERAV 276
Query: 285 CGQFPQQDIDSF 296
++ Q D F
Sbjct: 277 LNEWHQMTRDGF 288
>gi|256845626|ref|ZP_05551084.1| predicted protein [Fusobacterium sp. 3_1_36A2]
gi|256719185|gb|EEU32740.1| predicted protein [Fusobacterium sp. 3_1_36A2]
Length = 463
Score = 45.3 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 34/336 (10%), Positives = 86/336 (25%), Gaps = 28/336 (8%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R +GK L +L V + + Q K + S K E+
Sbjct: 52 CRRMGKDLLALYLACKRCIDVSNSVVYYVFPTMKQGKM----MILDGYSNNKKKIIDEII 107
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT- 203
+ P SD L+ D+ ++ E +
Sbjct: 108 DRKVLDLPLKSDKLY---HSDNTIRFKNGSKIYFVGSQDANNKVGGNLDLLVISEMALIQ 164
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ I + ++ + + T R +F ++ + W ++ + +D
Sbjct: 165 NEDIMMYLIPSVVNIKGKIILVSTP---RFGSEFNKMIEEKPQKWFIDILNALDIRAVDE 221
Query: 264 SFHEGIIARYGLD------SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAP 317
+ + ++ + ++ ++++ ++
Sbjct: 222 NGERVYTDEKLENVKTLMSESKFEQDILCNIDVANENAIYAASLLKAEWIKDLNITNKK- 280
Query: 318 LIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+ D+T +V I H + + I ++++ + I
Sbjct: 281 --LYVSEDLGINDSTALVFTVDNTIIHHYANTDKATIHYIEYIKAFMKEHNIKDVEI--- 335
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ L +R + N R
Sbjct: 336 -----ILPHDARNRQDAIDYLTSRREAYNKHFNNVR 366
>gi|120610299|ref|YP_969977.1| phage terminase [Acidovorax citrulli AAC00-1]
gi|120588763|gb|ABM32203.1| phage Terminase [Acidovorax citrulli AAC00-1]
Length = 563
Score = 45.3 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 46/354 (12%), Positives = 93/354 (26%), Gaps = 37/354 (10%)
Query: 25 KLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLNSVNNPNPEVFKGA 81
+ ++ L FF K E + P WQ + +
Sbjct: 23 RQDLADRALGFFEDVLKLNGGEYEAKPFLLAPWQAFVVGSIFGWYTQDGFRRFSIA---Y 79
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISV-ICLANSETQLKTTLWAEVSKWLSLLP---- 136
I G+G GK+ L A + L+ ++ + A ++ L+ + ++L P
Sbjct: 80 IETGKGSGKSPLAAGIGLYGLTADGEQRAEVYAAATKRDQAQILFRDAVSMVNLSPMLQS 139
Query: 137 -----NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD-------TF 184
+ ++ + + + + E
Sbjct: 140 RLVQSGRDEKVWNLFYPATNGFFRTIASDEGQSGPRPHIGLIDEVHEHTTSTVVEMMLAG 199
Query: 185 VGHHNTYGMAIINDEASGTP----DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
+ +I + S LGI E + + F +
Sbjct: 200 RKSRRRALVLMITNSGSDLNTVCGQYHELGIKVCRGELVNDAIFAFICALDEGEDPFKDE 259
Query: 241 FN----KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD--SDVTRVEVCGQFPQQDID 294
P D+K E + G+ V R Q+ Q +
Sbjct: 260 ACWAKVNPSLDYKAH--GQTDGIPGRRYLREQVHTARGVPAKEAVVRRLNFCQWTQAESP 317
Query: 295 SFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD 347
I ++ ++A R P + G D++ V+L V + +
Sbjct: 318 W-IGWDVWKDAQERVPLSLLRNRPAVAGLDLSSTTDLTAFVLLFYPTVADPHWR 370
>gi|240850562|ref|YP_002971962.1| phage terminase, large subunit [Bartonella grahamii as4aup]
gi|240267685|gb|ACS51273.1| phage terminase, large subunit [Bartonella grahamii as4aup]
Length = 441
Score = 45.3 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 45/352 (12%), Positives = 91/352 (25%), Gaps = 40/352 (11%)
Query: 84 AGRGIGKTTLNA-WLVLWLMSTRPG---ISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT A L +++C + L + E+ + +
Sbjct: 27 GGRGSGKTRSFALMAALKGYQFGREGISGTILCARQFQNSLAESSLEEIKRAIEAH---- 82
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+Y ID + +G + DE
Sbjct: 83 --------DFLKDYYKVGESSIKSIDGRIAFQFSGLDRNIASIKSMG----RILLCWVDE 130
Query: 200 ASGTPDVINLGILGFLTERNANRF--WIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTR 256
A + ++ L E +T NP R + + F + KR +I+
Sbjct: 131 AEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRENAPVEKRFRFSDNEAIKRVEINWS 190
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEALNREPCPD 313
+E + + + G + + ++ ++ +E D
Sbjct: 191 DNPKFPKILNEARLDDLRNRPETYKHIWEGDYLKAVQGAYYQKEMLAAEQEGRIGRVARD 250
Query: 314 PYAPLIMGCDIAEEG--GDNTVVV----LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
P + DI G D T + + R + + ++ L + Y
Sbjct: 251 PLMQIRAFWDIGGTGAKADATAIWIAQFVGREIRVLNYYEAQGQPLSEHIGWLRQ--NGY 308
Query: 368 RPDAIIIDANNTGARTC------DYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+++ + L G+ + Q R
Sbjct: 309 EKALMVLPHDGATRDRVHNVSFESALNDAGFETQVIPNQGAGAVKMRIEAVR 360
>gi|209559980|ref|YP_002286452.1| Large terminase [Streptococcus pyogenes NZ131]
gi|209541181|gb|ACI61757.1| Large terminase [Streptococcus pyogenes NZ131]
Length = 429
Score = 45.3 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 34/306 (11%), Positives = 77/306 (25%), Gaps = 25/306 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ RG K+ A + + P +++ + K + + + + L H F
Sbjct: 32 VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQLKVTHLF 91
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI-INDEA 200
+ SL + T + +EA
Sbjct: 92 KFNE-SLPEITVKATGQKILFRGLDDELKITSITVDV------------GLLCWAWFEEA 138
Query: 201 SGTPDV-----INLGILGFLTERN-ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--Q 252
+ I G L + + + + F++ F
Sbjct: 139 YQIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRADTFSGT 198
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
R E +D Y + R+ G++ + F +++ + E
Sbjct: 199 TTFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVD--FDVEKTI 256
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF-DWSKTDLRTTNNKISGLVEKYRPDA 371
G D T++ + + + L+ + I ++
Sbjct: 257 QRVKETSAGMDFGFTQDPTTLICVAVDLINKELWLYNEHYQKAMLTDHIVKMIRDKNMHK 316
Query: 372 IIIDAN 377
I A+
Sbjct: 317 SYIAAD 322
>gi|300871056|ref|YP_003785928.1| phage terminase large subunit [Brachyspira pilosicoli 95/1000]
gi|300688756|gb|ADK31427.1| phage terminase, large subunit [Brachyspira pilosicoli 95/1000]
Length = 453
Score = 45.3 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 38/318 (11%), Positives = 86/318 (27%), Gaps = 44/318 (13%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAIS-AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119
++ + L + I+ GRG GK+ A +++ S ++C +
Sbjct: 2 NININILKPFEKWINTEKRLKIAFGGRGGGKSESIARILI-AKSFEINGVILCAREIQKS 60
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
+ + + + + L +F + + +SK R S E
Sbjct: 61 ISYSTYPLLISIIKELNLNEFFVV-----------KRNEIINKITNSKFIFLGIRECSIE 109
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY- 238
+ +EA + + + + NPR + Y
Sbjct: 110 EIKSIYNVR-----ICFIEEAQTLTQRSYEILEPSIRADKSEIWLAF--NPRFETDFIYR 162
Query: 239 ------------------EIFNKPLDDWKRFQ--IDTRTVEGIDPSFHEGIIARYGLDSD 278
E + K +D I+ ++ ++ L
Sbjct: 163 VVSQFSLYNKVYKDKENKEYYYKEYEDANILITFINYDGNYYFSDILNKSRLSTLKLMPK 222
Query: 279 VTRVEVCGQFPQQDIDSFI--PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
+ G+ + F+ L +E ++ I+ E +V+V
Sbjct: 223 MYEHIWLGKIKSKHGKVFLYSKLKFYDENKEKDKIYSNEHKAIVDPAFGEYNCFTSVIVY 282
Query: 337 RR-GPVIEHLFDWSKTDL 353
+ G I + +
Sbjct: 283 TQIGNDIYLIDSGLMRND 300
>gi|19746248|ref|NP_607384.1| terminase, large subunit [Streptococcus pyogenes MGAS8232]
gi|19748434|gb|AAL97883.1| putative terminase, large subunit [Streptococcus pyogenes MGAS8232]
Length = 431
Score = 45.3 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 33/339 (9%), Positives = 84/339 (24%), Gaps = 23/339 (6%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ RG K+ A + + P +++ + K + + + + L H F
Sbjct: 34 VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQLKVSHLF 93
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ SL + T A +
Sbjct: 94 KFNE-SLPEITVKATGQKILFRGLDDELKITSITVDV----------GALCWAWFEEAYQ 142
Query: 202 GTPDVINLGILGFLTERNA-----NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--QID 254
+ ++ + + + + + F++ F
Sbjct: 143 IETEDKFSTVVESIRGTSDVPDFFKQITVTFNPWSERHWLKRVFFDEETKRADTFSGTTT 202
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
R E +D Y + R+ G++ + F +++ + E
Sbjct: 203 FRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVD--FDVEKTIQR 260
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF-DWSKTDLRTTNNKISGLVEKYRPDAII 373
+G D T++ + + L+ + I ++
Sbjct: 261 VKETSVGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRDKNLHRSY 320
Query: 374 IDANNTGARTCDYLEMLGYH--VYRVLGQKRAVDLEFCR 410
I ++ R ++ G V + G+ +
Sbjct: 321 IAGDSAEKRLIAEIKSKGVSGIVPSIKGKGSIMQGIQFM 359
>gi|266623782|ref|ZP_06116717.1| terminase, large subunit [Clostridium hathewayi DSM 13479]
gi|288864419|gb|EFC96717.1| terminase, large subunit [Clostridium hathewayi DSM 13479]
Length = 440
Score = 45.3 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 26/250 (10%), Positives = 68/250 (27%), Gaps = 17/250 (6%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG K++ + V+ L+ + + + L+ +++ ++ + L F
Sbjct: 167 PGGRGSTKSSFISLEVIDLIMNNDQMHAVVMRQVADTLRGSVYQQILWAIEALELSEEFH 226
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+P + I + + S + P ++G + +
Sbjct: 227 ATV-----SPMEITRISTGQKIYFRGADDPGKVKSIKVPFGYIGI------LWLEELDQF 275
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID-TRTVE-- 259
I + + + NP + + + + K + V
Sbjct: 276 VGPESVRKIEQSVIRGGEVAYIFKSFNPPKTASNWANKYIKVPKASRLVTESTYLDVPPK 335
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ F + ++ D E G F + + + + ++
Sbjct: 336 WLGKPFLDEAEFLKEVNPDAYDNEYMGVANGSGGSVF---DNVTIRKITDEEIAQFDHVL 392
Query: 320 MGCDIAEEGG 329
G D
Sbjct: 393 NGVDWGWYPD 402
>gi|227522324|ref|ZP_03952373.1| phage terminase [Lactobacillus hilgardii ATCC 8290]
gi|227090531|gb|EEI25843.1| phage terminase [Lactobacillus hilgardii ATCC 8290]
Length = 614
Score = 45.3 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 47/351 (13%), Positives = 95/351 (27%), Gaps = 54/351 (15%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+ + + NF + P+ WQ + + +
Sbjct: 78 YYDLDKCRNICNFARMCPDVSQ-NKPIPLMI----WQQAILCLSQGWRTK--EDKQKRFE 130
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRP----GISVICLANSETQLKTTLWAEVSKWLSL 134
+ +S R GK+ L L+L+ + LA + Q K + W + + +
Sbjct: 131 RCMVSVARTNGKSYLLNILILYAYLVEDSDQFNADLCYLAPVDKQSKKS-WRYIKQTFNS 189
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
L F L +D + S ++ H +
Sbjct: 190 LQEMPGFR--KLIKDQNIAINDDVLKSTKTQNQILRMTA------GSAQLDAFHFLFATV 241
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMT--SNPRRLSGKFYEIFNKPLDDWKRFQ 252
+ + DVI+ G + N F+I T SNP+ K ++
Sbjct: 242 DEYGDENFNSDVISKVTSGQVQTSNRQTFFISTAYSNPKVPMYSDVRRLTKAMEKDSNRT 301
Query: 253 ID------TRTVEGIDPSFHEGIIARYG------------------LDSDV-------TR 281
D + + + E + DS +
Sbjct: 302 EDSTLALIWQQDDQDEVDDPETWVKSNPLLDLPAKHDTLLKGLISERDSKLEDGTLNDFI 361
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
+ Q D ++ L I++++ + D +G D++ D
Sbjct: 362 NRNLNMWLQTAKDKYLKLEDIQKSVVSDFEIDNQD-CYVGFDLSHASDDTA 411
>gi|167630979|ref|YP_001681478.1| phage terminase, large subunit, putative [Heliobacterium
modesticaldum Ice1]
gi|167593719|gb|ABZ85467.1| phage terminase, large subunit, putative [Heliobacterium
modesticaldum Ice1]
Length = 543
Score = 45.3 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 76/301 (25%), Gaps = 36/301 (11%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + V + + + + +GK+ L A + L L V
Sbjct: 60 DWQEQIVRDVFGILKPNGYR---QFNTAYVEIPKKMGKSELAAAIALLLTCGDNEERAEV 116
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKH----WFEMQSLSLHPAPWYSDVLHCSLGIDS 166
A Q + ++ + + + P + ++ + +
Sbjct: 117 YGCAADRQQA-SIVFEVAADMVRMCPALNRRVKLLSSTKRLIYLPTNSFYQVLSAEAYSK 175
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM 226
++ + E H + + G+ D + +T + I
Sbjct: 176 HGFNIHGVVFDE--------LHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTQSIC 227
Query: 227 TSNPRRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVEG----IDPSFHEGIIA 271
++ + P DDW ++ + + +
Sbjct: 228 YETHQKAKDILDGRKSDPTFYPVIYGADEADDWTDPKVWKKANPSLGITVSIDKVKAACE 287
Query: 272 ---RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEG 328
+ + + R Q+ +Q + L A + G D++
Sbjct: 288 SAKQNPAEENSFRQLRLNQWVKQAVRWMPMLKWDACAFPVDTESLEGRVCYGGLDLSSTT 347
Query: 329 G 329
Sbjct: 348 D 348
>gi|162447469|ref|YP_001620601.1| bacteriophage terminase-like protein, large subunit [Acholeplasma
laidlawii PG-8A]
gi|161985576|gb|ABX81225.1| bacteriophage terminase-like protein, large subunit [Acholeplasma
laidlawii PG-8A]
Length = 545
Score = 44.9 bits (104), Expect = 0.028, Method: Composition-based stats.
Identities = 28/229 (12%), Positives = 64/229 (27%), Gaps = 23/229 (10%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL-VLWLMSTRPGISVIC 112
W+ ++ + + + R GKTT A + + ++ G+ ++C
Sbjct: 73 WEKAILQAAYG--FKIADTNLRRFNEVILLIARKNGKTTFIAGIDLAEFFLSKGGVDIVC 130
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+N+ Q L+ E++ S + K S
Sbjct: 131 ASNTSEQA-NILFDEINNMREGSKA------LSNEKRSKKNIFHIYSPKSKNKIKKLSAQ 183
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
R + + I++ T + I + + +I+T+
Sbjct: 184 SRNKDGYNIE----------VGCIDEVHEMTDSKVYDAIKQSQSTKEEPLIFIITTEGNT 233
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
+ G + K D R + + + + I D +
Sbjct: 234 VGGFLDSKLDYVRKMIKGEINDERVLPWL---YTQDSINEIYEDKSTWQ 279
>gi|255308171|ref|ZP_05352342.1| type III restriction protein, res subunit [Clostridium difficile
ATCC 43255]
Length = 993
Score = 44.9 bits (104), Expect = 0.028, Method: Composition-based stats.
Identities = 45/278 (16%), Positives = 79/278 (28%), Gaps = 14/278 (5%)
Query: 3 RELPTNPETEQKLFDLMWSDEI--KLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
NP E K +EI K S + + F+ E + PR QL+ +
Sbjct: 218 NMGKGNPVVEGKEKTSYLWEEILTKDSLLDIIKRFYFIQEDDKKSKRAIFPRFHQLDAVR 277
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQ 119
+ A + N + A G GKT AW L S + I +
Sbjct: 278 KIVADLEVNKAGKNYLIQHSA-----GSGKTNTIAWTAHRLSSLHDEDNNAIFDSVIVVT 332
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
+ L ++ + L +K+ + S L ++ +K T + +
Sbjct: 333 DRKVLDKQLQDAIYQLEHKNGLVV----KIDDDKNSSDLADAIVNRAKIIITTIQKFQYA 388
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN-ANRFWIMTSNPRRLSGKFY 238
P II++ S T + L + I N +
Sbjct: 389 LPK-IEQLEKRRYAVIIDEAHSSTSGENMNALKETLAGKTLEEAKIIDAENEKNEKSSID 447
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
++ + I + + R G D
Sbjct: 448 KMNDLIEKRTNLDHISFFAFTATPKNKTMQVFGRIGED 485
>gi|317055978|ref|YP_004104445.1| phage terminase large subunit, PBSX family [Ruminococcus albus 7]
gi|315448247|gb|ADU21811.1| phage terminase, large subunit, PBSX family [Ruminococcus albus 7]
Length = 409
Score = 44.9 bits (104), Expect = 0.029, Method: Composition-based stats.
Identities = 53/425 (12%), Positives = 112/425 (26%), Gaps = 61/425 (14%)
Query: 60 EVVDAHCLNSV-NNPNPEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANSE 117
+ N + + GA+ + GKT+ A ++W M G + +
Sbjct: 7 RFLFKWWANPEYRRYDGIICDGAVRS----GKTSCMALSFLMWSMGRFEGNNFGLCGKTI 62
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
L+ L E+ KW L F + + + G +++Y R
Sbjct: 63 IGLRRNLVTELLKWAEKL----GFTVTENVS-----KNYMDVDFAGKRNRYYLFGGR--- 110
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ I+ DE + P + + R + ++ NP F
Sbjct: 111 --DEASSALIQGVTLAGILLDETALMPRSFVEQAVARCSVRGSKLWF--NCNPDNPYHWF 166
Query: 238 YEIFNKPLDDWKR--FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
+ + + + + Y V G++ +
Sbjct: 167 KREWIDKAAEKNLLYIHFELKDNPSLSEEVKRRYERLYS--GAFYERFVLGRW--SAAEG 222
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV-------VVLRRG-PVIEHLFD 347
I E+ + PD + CD + + R G + +
Sbjct: 223 LIYPMFDEKKYVCDKAPDDCERFAVSCDYGTVNPSSFGLWGLKDDIWYRIGEYYYDSAKE 282
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLE 407
S+ + + L D ++ D + A + G + +
Sbjct: 283 GSRRTDEEHYDALEELAGDRDIDYVVCDPSA--ASFIQCIRRHG------KFRVIQAKND 334
Query: 408 FCRNRRTELHVKMADWLEFASL---INHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAK 464
R + D + L +++ + ES R + K
Sbjct: 335 VVTGIR-----RTQDMIRGGRLMICRGCEDILREFTMYRWEE---------ESGRDRPIK 380
Query: 465 STDYS 469
D++
Sbjct: 381 ENDHA 385
>gi|261886214|ref|ZP_06010253.1| hypothetical protein CfetvA_14768 [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 109
Score = 44.9 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 409 CRN-RRTELHVKMADWLEF--ASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
N R+ E+ + + LE + N LI ++ ++K I + +KR +
Sbjct: 25 FSNTRKEEMALNLKKALEDKLIKIPNDPLLIADIHAIKRTIGAKS--FKYHAKRNEYG-H 81
Query: 466 TDYSDGLMYTFAE-NPPRSDMDFGR 489
D L + R+ G
Sbjct: 82 ADRFWALALALSHIGVVRAKKSGGA 106
>gi|154502292|ref|ZP_02039352.1| hypothetical protein RUMGNA_00105 [Ruminococcus gnavus ATCC 29149]
gi|153797171|gb|EDN79591.1| hypothetical protein RUMGNA_00105 [Ruminococcus gnavus ATCC 29149]
Length = 611
Score = 44.9 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 43/282 (15%), Positives = 77/282 (27%), Gaps = 36/282 (12%)
Query: 6 PTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAH 65
E +Q L+ S + +N V + F W + A + H
Sbjct: 4 KYADERQQNLYKKFPSTHFLSNPTN-VHNTFLWSTFFSRNLHRLAMD------YLGIRLH 56
Query: 66 CLNSVNNPNPEVFK-GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + + I A R K+ + A +PG ++ + + Q K +
Sbjct: 57 LYQQLILYLMGISQLVCIVACRAAAKSFIIALYACCKAIIKPGSKIVLGSATRGQSKLII 116
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
++ L +++ PA +S Y T + F
Sbjct: 117 SEKIKNEL-------------MNMSPALRKEIKDIKDSANESIVYFNNGSTIKVFTANEF 163
Query: 185 VGHHNTYGMAIINDEASGTPDVINL-GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
+ +E I+ I F T R A FYE
Sbjct: 164 A--RGLRSTDAVREEFRQIDKNIDDSVISPFQTIRQAPFMI----------DPFYEGIEC 211
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
+D K I + D + ++ + D R V
Sbjct: 212 LKEDPKDIYISS--SWLDDGHWMWNLVDQAYTDMLNNRTSVM 251
>gi|296316044|ref|YP_003662508.1| DNA packaging terminase subunit 1 [Bovine herpesvirus 5]
gi|40456167|gb|AAR86145.1| UL15 DNA cleavage, packaging protein [Bovine herpesvirus 5]
Length = 737
Score = 44.9 bits (104), Expect = 0.031, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 16/162 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GKT L+ ++T GI + A+ + ++ E+ L +
Sbjct: 259 PRRHGKTWFLVPLIALALATFKGIKIGYTAH-IRKATEPVFEEIVARLRQWFGSERVDHV 317
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ + T G + DEA+
Sbjct: 318 KGEVISFSFPDGAR---------------STIVFASSHNTNGIRGQDFNLLFVDEANFIR 362
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
I+GFL + + ++ ++N + S F D
Sbjct: 363 PEAVQTIVGFLNQASCKIIFVSSTNTGKASTSFLYNLKGASD 404
>gi|308180865|ref|YP_003924993.1| bacteriophage terminase large subunit [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|308046356|gb|ADN98899.1| bacteriophage terminase large subunit [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 632
Score = 44.9 bits (104), Expect = 0.031, Method: Composition-based stats.
Identities = 42/324 (12%), Positives = 91/324 (28%), Gaps = 50/324 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PG 107
WQ M ++ + + +S RG GKT L A + +
Sbjct: 99 MPWQEFIMAMLIGWRNDDGGK---RFSRAIVSVARGQGKTYLMAIITAYSYLIESLGLSN 155
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + + Q L + L+ + F+ + + S
Sbjct: 156 QDYLVSSINYKQTSKIL-GYIKSMLAKIATIEPFKSLIADSGLDTRTLSSQADQVVMSSN 214
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWI 225
+ ++ + D+F + I DE ++ + G + N I
Sbjct: 215 NNKLRAISHEAGQYDSF------HFTTAIFDEIGEIKTRQKVSKIVSGQVKVPNRQFIQI 268
Query: 226 MTSNP-------RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGL--- 275
T+ P + L D + + + +D ++ + +
Sbjct: 269 STAYPDPTVPFHDDERMIQQAMEQDYLRDADTYLGLIWSQDNLDETYKPDMWVKSNPLLD 328
Query: 276 ----------------DSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
DSD + + + +Q DSF+ L +E A+
Sbjct: 329 LPSQREVLLNGLTDKCDSDALSGTLNDFQNKNLNLWLEQSADSFLKLPDVERAIISSFSF 388
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVL 336
D + +G D + + + +
Sbjct: 389 D-DRQVYIGFDYSMFSDNTALAFV 411
>gi|171741108|ref|ZP_02916915.1| hypothetical protein BIFDEN_00175 [Bifidobacterium dentium ATCC
27678]
gi|171276722|gb|EDT44383.1| hypothetical protein BIFDEN_00175 [Bifidobacterium dentium ATCC
27678]
Length = 482
Score = 44.9 bits (104), Expect = 0.033, Method: Composition-based stats.
Identities = 53/462 (11%), Positives = 105/462 (22%), Gaps = 70/462 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ ++ V + + + R GK+TL P +
Sbjct: 35 PWQR-YVADVAGEIDPATGTY--YYDRVILGTPRQCGKSTLIDTEDTRNAQLGPDRKIYY 91
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
LA + + ++ L + +
Sbjct: 92 LAQTGKDAE----KHFKDYVQQLAKSRLAPIACRPRLSNGGM------------EQRFIN 135
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT---------ERNANRF 223
G H T DEA D IL + +
Sbjct: 136 GSFICPLAVTKVAG-HGTQMDKFTIDEAFSLDDETGKLILDGMAPTMNTRLHFTGVQPQI 194
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT---VEGIDPSFHEGIIA-------RY 273
WI ++ S + + + DP + I+ +
Sbjct: 195 WITSTEGTADSTFLNGLLDGLRAGDVPRRTCWFDFGIPADADPEDLQTILKWHPAAGLLW 254
Query: 274 GLD------------SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLI 319
GLD + + D I + + + PD PL+
Sbjct: 255 GLDQLRDFRGQFEGNAAGWARAFGNRRDTGVADRVIDETLWQATVATPIGPDRLDGRPLV 314
Query: 320 --MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
D+ + + +I L E+Y+ +++D
Sbjct: 315 FAAAVDVDATHTSLAAGIRDADGTVTVQLLQVLDGTGRAPGEIMRLCERYK-APLVMDDR 373
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFA---SLINHSG 434
A D L V + + ++ + LI H+
Sbjct: 374 GPNADLHDRLRSQADDVGEPV--------IQFVPMQAGDYLAIGQAFVSGLHNRLIRHAT 425
Query: 435 LIQ-NLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+Q + + + + + + G S + M
Sbjct: 426 DMQLDESAAQCARTWSGDAWRVTRRGSTGLTSP--LEACMLA 465
>gi|118443517|ref|YP_878252.1| PBSX family phage terminase large subunit [Clostridium novyi NT]
gi|118133973|gb|ABK61017.1| phage terminase, large subunit, PBSX family [Clostridium novyi NT]
Length = 419
Score = 44.9 bits (104), Expect = 0.033, Method: Composition-based stats.
Identities = 31/329 (9%), Positives = 79/329 (24%), Gaps = 18/329 (5%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG K++ + +++ M + A ++ V L +
Sbjct: 34 KGGRGSTKSSFISIEIIFNMMKDSKQGKVTNA--------VIFRRVKDTLRGSVFEQMLW 85
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ W + L + + + Y I +E
Sbjct: 86 AIEKLKCESEWEVNYSPLKLTYKPLGTVILFKGADNPLKMKSIKVAKGYIKYIWYEEVDE 145
Query: 203 TP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE- 259
D I + + + P + D + V
Sbjct: 146 FEGYDKIRNINQSLMRGGPKFCVFYSFNPPESQRNWANMEVLETRKDKLVHHSNYLGVPR 205
Query: 260 -GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+ F ++ + G + F + + + +
Sbjct: 206 EWLGKQFILEAEHLKKVNHLKYEHDYLGAVTGTGGEVF---TNVTIRKITDEEIASFDRV 262
Query: 319 IMGCDIAEEGG--DNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
G D TV + ++F + ++ + + ++ + + I+
Sbjct: 263 HRGLDFGYASDPLHYTVNHYDKTRRRLYIFYEIHKAGMSNSSAVETIKQENKSNNRIVAD 322
Query: 377 NNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+ T + LG + +V+
Sbjct: 323 SAEPR-TIAEFKKLGLKIIGAKKGPDSVE 350
>gi|314938435|ref|ZP_07845725.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133a04]
gi|314940850|ref|ZP_07847760.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133C]
gi|314953782|ref|ZP_07856647.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133A]
gi|314994570|ref|ZP_07859832.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133B]
gi|314997239|ref|ZP_07862219.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133a01]
gi|313588686|gb|EFR67531.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133a01]
gi|313591038|gb|EFR69883.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133B]
gi|313594222|gb|EFR73067.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133A]
gi|313600298|gb|EFR79141.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133C]
gi|313642244|gb|EFS06824.1| phage terminase, large subunit, PBSX family [Enterococcus faecium
TX0133a04]
Length = 434
Score = 44.9 bits (104), Expect = 0.033, Method: Composition-based stats.
Identities = 38/300 (12%), Positives = 84/300 (28%), Gaps = 31/300 (10%)
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ GRG GK++ A ++ + R ++ + + + L+ +++ ++ +
Sbjct: 27 ILNIVCKGGRGSGKSSDIAH-IVTQLLMRYAVNAVGIRYVDNTLEQSIYEQMKWAIEKQG 85
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
F+ L +Y + ER + + + I
Sbjct: 86 VSRLFKFNKSPLKITYLP-----------RGNYMIFRGAQNPERIKSLKDSKFPFAIGWI 134
Query: 197 NDEASGTPDVINLGI-----LGFLTERNANRFWIMTSNPRRLSGKFYEIFNK--PLDDWK 249
+ A + I G L + +F+ + P+R + + D+
Sbjct: 135 EELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYETSFQPDNTF 194
Query: 250 RFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN--IIEEALN 307
R I F + + A + E G + +P + +++
Sbjct: 195 IHHSTYRDNPFISKEFLKEVEATRASNPRRAEWEYDG---KAVGSGVVPFDNLQVKKGSI 251
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKIS 361
+ + + G D D V G K R NK
Sbjct: 252 TDEMISNFDNIRNGLDYG-YATDPLAFVRWHYDKKKNGIYAIDEIYGVKISNREFANKAK 310
>gi|325662074|ref|ZP_08150693.1| hypothetical protein HMPREF0490_01431 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471737|gb|EGC74956.1| hypothetical protein HMPREF0490_01431 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 533
Score = 44.9 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 43/357 (12%), Positives = 93/357 (26%), Gaps = 33/357 (9%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
M +E P L D + +E+ F+ KGT WQ + +
Sbjct: 1 MKKEFEYIPTR-FMLEDSYYDEEMANFAVTFIEQLC--HTKGTWAGKKFKLLDWQEQIIR 57
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC--LANSET 118
+ + + I + GK+ L A + L L A
Sbjct: 58 DLFGTLKPNGYR---QFNTAYIEIPKKNGKSELAAAVALLLCCGDGEQRAEIYGCAADRG 114
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
Q T ++ + + + P + + L+ ++ + ++ YS
Sbjct: 115 QA-TIVFDVAADMVRMCPALNK-RCKILTSQKRILFTPTNSFYQVLSAEAYSKHGFNI-- 170
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
F H + + G+ D + +T + I ++
Sbjct: 171 -HGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTNSICYETHQKAKDILE 229
Query: 239 EIFNKP-----------LDDWKRFQIDTRTVEGI--------DPSFHEGIIARYGLDSDV 279
P +DW ++ ++ + + E G +
Sbjct: 230 GRKIDPTFYPVIYGAGEDEDWTDPKVWLKSNPSLGETIGMDKVEAACESAKQNPGE-ENS 288
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
R Q+ +Q + A G D++ + ++
Sbjct: 289 FRQLRLNQWVKQAVRWMPMDKWDACAFPVNEEMLEGRVCYGGLDLSSTTDLTSFCLV 345
>gi|310005828|gb|ADP00213.1| DNA maturase beta subunit [Cyanophage Syn26]
Length = 577
Score = 44.9 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 48/379 (12%), Positives = 95/379 (25%), Gaps = 66/379 (17%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ I A RG+GK+ + VLW + ++ ++ S+ + +
Sbjct: 40 QSGPKRLQIQAFRGVGKSWITGAFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIE 99
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----------PDT 183
KH + + + K + P
Sbjct: 100 TPWLKHLRPKSDDARWSRISFDVLCSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGN 159
Query: 184 FVGHHNTYGMAIINDEASGT-------------PDVINLGILGFLTERNANRFWIMTSNP 230
+ + + EA + L ERN F P
Sbjct: 160 SMTELMREKLLQLCTEAESILTPKDDSRIMYLGTPQTTFTVYRKLAERNYRPFVWPARFP 219
Query: 231 RRLSGKFYEIFNKPLDDWK--RFQIDTRTVEGIDPSFHEGIIARYGL---------DSDV 279
+ ++ I + +D ++ + D + G D+ +
Sbjct: 220 KNITPYEGLIAPQLQEDIDNGAQPGESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSL 279
Query: 280 TRVE----------VCGQFPQQDIDSFI-----------------PLNIIEEALNREPCP 312
+ E V P + D+ I P + + +
Sbjct: 280 SDAEKFPLKMADLVVTSVNPTEAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEW 339
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVL---RRGP-VIEHLFDWSKTDLRTTNNKISGLVEKYR 368
PY I D + G D T + G + + + T I +KY
Sbjct: 340 TPYQETICSVDPSGRGSDETAACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYN 399
Query: 369 PDAIIIDANNTGARTCDYL 387
++++ N G L
Sbjct: 400 VSTLVVE-TNFGDGIVSEL 417
>gi|240850378|ref|YP_002971772.1| phage terminase, large subunit [Bartonella grahamii as4aup]
gi|240267501|gb|ACS51089.1| phage terminase, large subunit [Bartonella grahamii as4aup]
Length = 444
Score = 44.9 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 45/352 (12%), Positives = 91/352 (25%), Gaps = 40/352 (11%)
Query: 84 AGRGIGKTTLNA-WLVLWLMSTRPG---ISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT A L +++C + L + E+ + +
Sbjct: 29 GGRGSGKTRSFALMAALKGYQFGREGISGTILCARQFQNSLAESSLEEIKRAIEAH---- 84
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+Y ID + +G + DE
Sbjct: 85 --------DFLKDYYKVGESSIKSIDGRIAFQFSGLDRNIASIKSMG----RILLCWVDE 132
Query: 200 ASGTPDVINLGILGFLTERNANRF--WIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTR 256
A + ++ L E +T NP R + + F + KR +I+
Sbjct: 133 AEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRENAPVEKRFRFSDNEAIKRVEINWS 192
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEALNREPCPD 313
+E + + + G + ++ ++ +E D
Sbjct: 193 DNPKFPKILNEARLDDLRNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQEGRIGRVARD 252
Query: 314 PYAPLIMGCDIAEEG--GDNTVVV----LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKY 367
P + DI G D T + + R + + ++ L + Y
Sbjct: 253 PLMQIRAFWDIGGTGAKADATAIWIAQFVGREIRVLNYYEAQGQPLSEHVGWLRQ--NGY 310
Query: 368 RPDAIIIDANNTGARTC------DYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+++ + L+ G+ + Q R
Sbjct: 311 EKALMVLPHDGATRDRVHNVSFESALKQAGFQTKVIPNQGAGAVKIRIETVR 362
>gi|58584193|ref|YP_203209.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84625962|ref|YP_453334.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|58428787|gb|AAW77824.1| DNA helicase II [Xanthomonas oryzae pv. oryzae KACC10331]
gi|84369902|dbj|BAE71060.1| DNA helicase II [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 728
Score = 44.9 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 50/378 (13%), Positives = 102/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 14 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 60 VTFT---NKAAGEM---------RHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 107
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + S P + + I
Sbjct: 108 PEGFQVMDSDDQLRLVKRVVQALELDESKYPPKQLSWWINEQKDEGRRPQHIQPEPNDDW 167
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ D +D + D+ +F + +
Sbjct: 168 TEVRRQVYAAYQDR-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 220
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 221 DEFQDTNAIQYAFVRVLAGESGNVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 271
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 272 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGDGDPIDLYAAYNEV 328
Query: 414 TE---LHVKMADWLEFAS 428
E + + W+
Sbjct: 329 DEARYMVERARQWVRDGG 346
>gi|124002988|ref|ZP_01687839.1| hypothetical protein M23134_07453 [Microscilla marina ATCC 23134]
gi|123991638|gb|EAY31046.1| hypothetical protein M23134_07453 [Microscilla marina ATCC 23134]
Length = 537
Score = 44.9 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 77/273 (28%), Gaps = 23/273 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AG+G GKT + L+S PG+ AN++ QL + V L + + E
Sbjct: 33 AGQGAGKTHGAGLISFRLISNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDEY 92
Query: 144 QSLSLH-----PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ P +S H +K + + H I D
Sbjct: 93 LGQGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAILD 152
Query: 199 EASGTPDV-INLGILGFLTERN---ANRFWIMTSNPRRLSGKFYEIFNKPLDDW---KRF 251
E T + + ILG L ++ + ++ G +
Sbjct: 153 ETKDTREEAVQEVILGRLRQQGLYISQTRAGALTSEEYDEGSPVVANLPFNPLYIFTSPA 212
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ-----------FPQQDIDSFIPLN 300
++ + E I A+ + +V G + ++I
Sbjct: 213 KVPWINDWFELSEYEEEIKAKIYDPPQYFKKKVGGDSKFVVISATHLNLKNLPSNYIKKQ 272
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
A +R PL + D +V
Sbjct: 273 EANLASHRHGMLIYGDPLAKSGGEFWKQWDASV 305
>gi|294795014|ref|ZP_06760149.1| phage terminase large subunit (GpA) [Veillonella sp. 3_1_44]
gi|294454376|gb|EFG22750.1| phage terminase large subunit (GpA) [Veillonella sp. 3_1_44]
Length = 634
Score = 44.5 bits (103), Expect = 0.036, Method: Composition-based stats.
Identities = 22/236 (9%), Positives = 62/236 (26%), Gaps = 24/236 (10%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98
G P ++ +Q + M+ P + + + + +GK+ + ++
Sbjct: 37 GLSAEPGRWKTSRAPYQKDIMDAFT----------QPGINRVVVKSASQVGKSDIMNNVL 86
Query: 99 LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVL 158
P +V+ + + + + +S + ++ S +
Sbjct: 87 GRYAHLDP-CAVMMIQPTIELAQDYSKSRISPMIRD------TKVLSQVFYETKSEDGTK 139
Query: 159 HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---- 214
++ G + ++ DE PD
Sbjct: 140 TRDGKNTILSKLFPGGRLIMCGANSPAGLASRPVRVLLADEVDRFPDSAGTEGDPVDLAA 199
Query: 215 --LTERNANRFWIMTSNPRRLSGKFY-EIFNKPLDDWKRFQIDTRTVEGIDPSFHE 267
+T + ++ S + E ++W+ + I + E
Sbjct: 200 KRMTTFWNRVMGLFSTPTNEGSSRIDVEYQTGTQEEWQHECPNCGEYHLIRHTEME 255
>gi|292905266|ref|YP_003541137.1| hypothetical protein Ava_D0014 [Anabaena variabilis ATCC 29413]
gi|75705004|gb|ABA24679.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
Length = 484
Score = 44.5 bits (103), Expect = 0.037, Method: Composition-based stats.
Identities = 58/369 (15%), Positives = 106/369 (28%), Gaps = 45/369 (12%)
Query: 23 EIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAI 82
F+ F + T E W E + + + L V N +I
Sbjct: 31 RAWNDFAYFAEYV----TGKTAAEHHL---EWITELVTGISSQTLELVAGDN-----LSI 78
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
A RG K+T A V W++ P I +I ++ SE+ + + + + + F
Sbjct: 79 LAPRGSAKSTWIAMWVAWVIGHNPSIQIIYVSYSESVALSRS-RIIKRIIESPKYREVFP 137
Query: 143 --MQSLSLHPAPWYSDVLHCSLGIDSKHY--STMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ W + Y T S + + ++ + +
Sbjct: 138 NVLPGKRWSDTDWEIRKDFAGVDSLDSDYTFYATGITGSITSRRSDLVVYDDIIKSSESI 197
Query: 199 EASGTPDV----INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ-- 252
E + + I L + R + + P WK+
Sbjct: 198 ENPEVREKITTNYSEVIRPTLKPGGRQ----VNIGTRFRADDIHCTDFIPAKGWKQIVQQ 253
Query: 253 -----IDTRTVEGIDPSFHEGIIARYGLDSDV-TRVEVCGQFPQQDIDSFIPLNIIEEAL 306
D + V F + DS V + + + S PL I+
Sbjct: 254 AIVDDDDGKEVSYWPERFTLEELQALREDSPVAFSFQYQNRVMRSSETSIDPL-WIKHG- 311
Query: 307 NREPCPDPYAPLIMGCDIA---EEGGDNTVVV----LRRGPVIEHLFDWSKTDLRTTNNK 359
PD + L +G D++ E D TV V + I + + ++
Sbjct: 312 ---EFPDHFDSLCIGGDLSASLRERADYTVFVLGGRVGNKFYILDIRRGRWSGNIEKLDQ 368
Query: 360 ISGLVEKYR 368
I L +
Sbjct: 369 IIELWADWG 377
>gi|224006195|ref|XP_002292058.1| helicase [Thalassiosira pseudonana CCMP1335]
gi|220972577|gb|EED90909.1| helicase [Thalassiosira pseudonana CCMP1335]
Length = 1581
Score = 44.5 bits (103), Expect = 0.037, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 11/144 (7%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL--PN 137
+ A G GKTT+ +L + + P + +A ++ + L +W L P
Sbjct: 948 VLLGAPTGSGKTTVAELALLRMKTQTPNGKCVYIAPLKSLARERL----KEWSKRLGAPP 1003
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-----TYG 192
+W ++ + L + + + R + D N
Sbjct: 1004 LNWKVLELSGDTSHDSRALNNSDVLICTPEKWDLISRGWRGVSGDFVSNASNGKKFVKEV 1063
Query: 193 MAIINDEASGTPDVINLGILGFLT 216
+I DE + + ++
Sbjct: 1064 GLLIIDEIHLLGEERGAVLEAIIS 1087
>gi|302412431|ref|XP_003004048.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102]
gi|261356624|gb|EEY19052.1| ATP-dependent DNA helicase MER3 [Verticillium albo-atrum VaMs.102]
Length = 709
Score = 44.5 bits (103), Expect = 0.037, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMST-RPGI 108
+E + A N ++F + + G GKT + A L +W RPG
Sbjct: 245 ALEEIYAQRFQYFNPMQTQIFHTLYNTPANVLLGSPTGSGKT-VAAELAMWWAFKERPGS 303
Query: 109 SVICLANSETQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L ++ + + + +
Sbjct: 304 KVVYIAPMKALVRER----VKDWGARLAKPLGLKLVELTGDNTPDTRTIKDADVIITTPE 359
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 360 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLAGDRGPILEIIVSRMN 404
>gi|328857391|gb|EGG06508.1| hypothetical protein MELLADRAFT_36161 [Melampsora larici-populina
98AG31]
Length = 824
Score = 44.5 bits (103), Expect = 0.037, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 6/155 (3%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA-EVSKWLSLLPNKHWFEMQS 145
G+GKT L+L G + +A + + W E+ K+ L W
Sbjct: 237 GMGKTIQTISLILSDRKAGDGKQTLVIAPT---VAIIQWRNEIEKFTKGLKVNVWHGGNR 293
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG--HHNTYGMAIINDEASGT 203
+ D++ S + + Y + H+ + +I DEA
Sbjct: 294 STDKKTMKSYDIVLTSYAVLESSFRRQNSGYRKFGELRKEASLLHSIHWHRVILDEAHNI 353
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
D G + ++ + + + G+ Y
Sbjct: 354 KDRSCNTAKGAFELQATFKWCLSGTPLQNRVGELY 388
>gi|319405798|emb|CBI79424.1| phage related protein [Bartonella sp. AR 15-3]
Length = 441
Score = 44.5 bits (103), Expect = 0.038, Method: Composition-based stats.
Identities = 42/360 (11%), Positives = 90/360 (25%), Gaps = 43/360 (11%)
Query: 79 KGAISA---GRGIGKTTLNA-WLVLWLMSTRPG---ISVICLANSETQLKTTLWAEVSKW 131
+ A+ A GRG GKT A L G +++C + L + E+ +
Sbjct: 19 RAAVRAAWGGRGSGKTRSFALMAALKGYQFGMGGISGTILCARQFQNSLAESSLEEIKRA 78
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ + + + + +
Sbjct: 79 VE-----------AHDFLKDYYKVGESTIKSKDGRISFQFSGLDRNIASIKSMGRI---- 123
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRF---WIMTSNPRRLSGKFYEIFNKPLDDW 248
+ DEA + ++ L E W+ + R + +
Sbjct: 124 -LLCWVDEAEPVTETAWQTLIPTLREEGDGWRAELWVTWNPLRENAPVERRFRFSENEGI 182
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEA 305
K +I+ +E + ++ + G + + ++ ++ +E
Sbjct: 183 KGVEINWSDNPKFPQILNEARLDDLKNRAESYQHIWEGGYLKAVQGAYFQKEMLAAEQEG 242
Query: 306 LNREPCPDPYAPLIMGCDIAEEG--GDNTVVV----LRRGPVIEHLFDWSKTDLRTTNNK 359
DP L DI G D T + + R + ++ L
Sbjct: 243 RIGRVARDPLMQLRAFWDIGGTGAKADATAIWIAQFVGREIRVLDYYEAQGQPLSEHIGW 302
Query: 360 ISGLVEKYRPDAIIIDANNTGARTC------DYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ Y +I+ + L G+ + Q R
Sbjct: 303 LRQ--NGYEKALMILPHDGATKDRVHNVSFESALNEAGFETQVIPNQGPGAVKMRIEAVR 360
>gi|49475696|ref|YP_033737.1| Phage related protein [Bartonella henselae str. Houston-1]
gi|49238503|emb|CAF27734.1| Phage related protein [Bartonella henselae str. Houston-1]
Length = 441
Score = 44.5 bits (103), Expect = 0.038, Method: Composition-based stats.
Identities = 39/275 (14%), Positives = 75/275 (27%), Gaps = 31/275 (11%)
Query: 79 KGAISA---GRGIGKTTLNA-WLVLWLMSTRPG---ISVICLANSETQLKTTLWAEVSKW 131
K A+ A GRG GKT A L G +++C + L + E+ +
Sbjct: 19 KAAVRAAWGGRGSGKTRSFALMAALKGYQFGMGGISGTILCARQFQNSLAESSLEEIKRA 78
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY 191
+ +Y ID + +G
Sbjct: 79 IE------------GHDFLKDYYKVGESSIKSIDGRIAFQFSGLDRNIASIKSMG----R 122
Query: 192 GMAIINDEASGTPDVINLGILGFLTERNANRF---WIMTSNPRRLSGKFYEIFNKPLDDW 248
+ DEA + ++ L E W+ + R + +
Sbjct: 123 ILLCWVDEAEPVTETAWQTLIPTLREEGEGWRAELWVTWNPLRDNAPVERRFRFSNNEAI 182
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEA 305
KR +I+ +E + + + G + ++ ++ +E
Sbjct: 183 KRVEINWSDNPKFPKILNEARLDDLKNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQEG 242
Query: 306 LNREPCPDPYAPLIMGCDIAEEG--GDNTVVVLRR 338
DP + DI G D T + + +
Sbjct: 243 RIGRVARDPLMQMRAFWDIGGTGAKADATAIWIAQ 277
>gi|291335182|gb|ADD94806.1| hypothetical protein [uncultured phage MedDCM-OCT-S12-C102]
gi|291336563|gb|ADD96112.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C6]
Length = 555
Score = 44.5 bits (103), Expect = 0.038, Method: Composition-based stats.
Identities = 34/308 (11%), Positives = 67/308 (21%), Gaps = 35/308 (11%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+P+V I G GK+ A ++ M RP + + +S
Sbjct: 61 WKDVDDAIDDPDVDVIYIFGGNRGGKSRYLASRMVRAMVNRPNMRIWSCHSSNDSSIQVQ 120
Query: 125 WAEVSKWLSLLPN----------------------KHWFEMQSLSLHPAPWYSDVLHCSL 162
+ +L + + + D+
Sbjct: 121 QPYIHTYLPQQWLAQKKAVRSVANISFTQKNGFSGRTIVGPNHSQMWFKNYTQDLSTLEG 180
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ S + M I G + + G + E
Sbjct: 181 TELDLIWFDELVPQSWVETLKYRLVSRKGKMLITFTPIEGYSSAVKSAMEGAIIEETREA 240
Query: 223 FWIMTSNPRRLSGKFYEIFNKPLDDWK----RFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
I ++P + G F + + + +
Sbjct: 241 KLIDPNSPGNIPGVPKGHMPYRARTKNGSGKIFWFYSEWNPYTPFDRLQKTLKGRTREEL 300
Query: 279 VTRVE------VCGQFPQQDIDSFIPLNII--EEALNREPCPDPYAPLIMGCDIAEEGGD 330
R V G+FP+ + + + I + P P A
Sbjct: 301 EIRAYGYVSNPVTGKFPRFTDRNIVKASDIPRQGTNYMVCDPTPGDRNWFFL-WARVDDL 359
Query: 331 NTVVVLRR 338
V + R
Sbjct: 360 GRVFIYRE 367
>gi|52081919|ref|YP_080710.1| hypothetical protein BL03501 [Bacillus licheniformis ATCC 14580]
gi|52787305|ref|YP_093134.1| hypothetical protein BLi03618 [Bacillus licheniformis ATCC 14580]
gi|52005130|gb|AAU25072.1| hypothetical protein BL03501 [Bacillus licheniformis ATCC 14580]
gi|52349807|gb|AAU42441.1| putative protein [Bacillus licheniformis ATCC 14580]
Length = 569
Score = 44.5 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 27/310 (8%), Positives = 65/310 (20%), Gaps = 36/310 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG--I 108
P Q+ V K GR KT A + +
Sbjct: 78 PDRIQIFIFGNVYGWIHKDTG--YRRFTKVYWQVGRKNAKTQSLACVASYEAMANNEKMS 135
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V A Q W E+ + + E + + + ++ SK
Sbjct: 136 EVYIGATKTEQA-QICWKEIKAQIEGCELLNKPEQKYRIAYST-IEHPKTNSTIKALSKD 193
Query: 169 YSTMCRTYSEERP-----------------DTFVGHHNTYGMAIINDEASGTPDVINLGI 211
++ + ++ +G M II +
Sbjct: 194 AGKTGDGFNPQCGIIDEYHAHKTSEIYDILESGMGARTQPIMVIITTAGHELNNPAYRVE 253
Query: 212 LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE---- 267
+++ DD K + + +
Sbjct: 254 YDYVSRLLDPNKV-----ETNEQYFVMVNEIDKDDDIKDERNWIKANPILASHEVGKKYL 308
Query: 268 ----GIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
+ + + ++ + ++ + + +G D
Sbjct: 309 RDRLEMALAVPEKMRDFLTKNMNVWVNMRDGGYMDMQAWKDCGSDQFPDLSGRECYVGID 368
Query: 324 IAEEGGDNTV 333
+++ V
Sbjct: 369 LSKRIDLTAV 378
>gi|331701881|ref|YP_004398840.1| Terminase [Lactobacillus buchneri NRRL B-30929]
gi|329129224|gb|AEB73777.1| Terminase [Lactobacillus buchneri NRRL B-30929]
Length = 631
Score = 44.5 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 51/353 (14%), Positives = 101/353 (28%), Gaps = 58/353 (16%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+ + + NF + P+ WQ + + +
Sbjct: 78 YYDLDKCRNICNFARMCPDVSQ-NKPIPLMI----WQQAILCLSQGWRTK--EDKQKRFE 130
Query: 79 KGAISAGRGIGKTTLNAWLVLWL----MSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
+ +S R GK+ L L+L+ S + + LA + Q K + W + + +
Sbjct: 131 RCMVSVARTNGKSYLLNILILYAYLVEASDQFNADLCYLAPVDKQSKKS-WRYIKQTFNS 189
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
L + F L +D + S ++ H +
Sbjct: 190 LQSMPGFR--KLIKDQNIAINDDVLKSTKTQNQILRMTA------GSAQLDAFHFLFATV 241
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMT--SNP--------RRLSGKFYEIFNKP 244
+ + DVI+ G + N F+I T SNP RRL+ + N+
Sbjct: 242 DEYGDENFNSDVISKVTSGQVQTSNRQTFFISTAYSNPKVPMYSDVRRLTKVMEKDSNRT 301
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYG------------------LDSDV------- 279
D + ++ E + DS +
Sbjct: 302 EDSTLALIWQQDDQDEVENP--ETWVKSNPLLDLPAKHDTLLKGLISERDSKLEDGTLND 359
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
+ Q D ++ L I++++ + D +G D++ D
Sbjct: 360 FINRNLNMWLQTAKDKYLKLEDIQKSVVSDFEIDNQD-CYVGFDLSHASDDTA 411
>gi|298253815|ref|ZP_06977404.1| phage terminase, large subunit [Gardnerella vaginalis 5-1]
gi|297532151|gb|EFH71124.1| phage terminase, large subunit [Gardnerella vaginalis 5-1]
Length = 530
Score = 44.5 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 35/298 (11%), Positives = 75/298 (25%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + I + +GK+ L A + L L V
Sbjct: 47 DWQEQIIRDLFGVVKPNGYR---QFNTAYIEIPKKMGKSELAAAVALLLCCGDNEERAEV 103
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q T ++ + + + P + ++ L+ + + ++ YS
Sbjct: 104 YGCAADRQQA-TIVFDVAADMVRMCPALNR-RVKILASQKRIIFLPTNSFYQVLSAEAYS 161
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
F H + + G+ D + +T + I
Sbjct: 162 KHGFNI---HGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTHSICYETH 218
Query: 231 RRLSGKFYE-----------IFNKPLDDWKRFQIDTRTVEGI--------DPSFHEGIIA 271
++ K DDW ++ + + + E
Sbjct: 219 QKAVDIIEGRKIDPTFYPVIYGAKDSDDWTDPKVWKKANPSLGVTVQMEKVKAAFESARQ 278
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
G + R Q+ +Q I G D++
Sbjct: 279 NPGE-ENAFRQLRLNQWVKQSIRWMPMEKWDACGFQVNEEELEGRVCYGGLDLSSTTD 335
>gi|9629858|ref|NP_045342.1| DNA packaging terminase subunit 1 [Bovine herpesvirus 1]
gi|971317|emb|CAA88116.1| unnamed protein product [Bovine herpesvirus 1]
gi|2653331|emb|CAA06117.1| UL15 protein [Bovine herpesvirus type 1.1]
Length = 735
Score = 44.5 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 16/162 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GKT L+ ++T GI + A+ + ++ E+ L +
Sbjct: 257 PRRHGKTWFLVPLIALALATFKGIKIGYTAH-IRKATEPVFEEIVARLRQWFGGERVDHV 315
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ + T G + DEA+
Sbjct: 316 KGEVISFSFPDGAR---------------STIVFASSHNTNGIRGQDFNLLFVDEANFIR 360
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
I+GFL + + ++ ++N + S F D
Sbjct: 361 PEAVQTIVGFLNQASCKIIFVSSTNTGKASTSFLYNLKGASD 402
>gi|209966369|ref|YP_002299284.1| hypothetical protein RC1_3107 [Rhodospirillum centenum SW]
gi|209959835|gb|ACJ00472.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 511
Score = 44.5 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 13/155 (8%)
Query: 28 FSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRG 87
F W L+G P + +++ E+ A R
Sbjct: 3 PVRFTEFLALWNH----LQGRGTPD-----LHLEMADWLEDALARGRRELLLLAF---RD 50
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
GK+++ W ++ P ++ LA T K + V + + P + +
Sbjct: 51 SGKSSIVGLYCAWRLARDPDCRILVLAADLTLAKK-MVRTVKRVVERHPLCAGLKPEKRE 109
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
L A ++ S + ++ D
Sbjct: 110 LWGAEAFTLQRPLVGRDPSMAAQGVGGNFTGSHAD 144
>gi|15674984|ref|NP_269158.1| putative terminase, large subunit [Streptococcus phage 370.3]
gi|13622131|gb|AAK33879.1| putative terminase, large subunit - phage associated [Streptococcus
phage 370.3]
Length = 429
Score = 44.5 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 37/340 (10%), Positives = 84/340 (24%), Gaps = 25/340 (7%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ RG K+ A + + P +++ + K + + + + L H F
Sbjct: 32 VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQLKVTHLF 91
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ SL + T +EA
Sbjct: 92 KFNE-SLPEITVKATGQKILFRGLDDELKITSITVDVGA-----------LCWAWFEEAY 139
Query: 202 GTPDV-----INLGILGFLTERN-ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--QI 253
+ I G L + + + + F++ F
Sbjct: 140 QIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRADTFSGTT 199
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
R E +D Y + R+ G++ + F +++ + E
Sbjct: 200 TFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVD--FDVEKTIQ 257
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF-DWSKTDLRTTNNKISGLVEKYRPDAI 372
G D T++ + + L+ + I ++
Sbjct: 258 RVKETSAGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRDKNLHRS 317
Query: 373 IIDANNTGARTCDYLEMLGYH--VYRVLGQKRAVDLEFCR 410
I ++ R ++ G V + G+ +
Sbjct: 318 YIAGDSAEKRLIAEIKSKGVSGIVPSIKGKGSIMQGIQFM 357
>gi|94988455|ref|YP_596556.1| terminase large subunit [Streptococcus phage 9429.2]
gi|94541963|gb|ABF32012.1| terminase large subunit [Streptococcus phage 9429.2]
Length = 431
Score = 44.5 bits (103), Expect = 0.041, Method: Composition-based stats.
Identities = 37/340 (10%), Positives = 84/340 (24%), Gaps = 25/340 (7%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ RG K+ A + + P +++ + K + + + + L H F
Sbjct: 34 VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQLKVTHLF 93
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ SL + T +EA
Sbjct: 94 KFNE-SLPEITVKATGQKILFRGLDDELKITSITVDVGA-----------LCWAWFEEAY 141
Query: 202 GTPDV-----INLGILGFLTERN-ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--QI 253
+ I G L + + + + F++ F
Sbjct: 142 QIETEDKFSTVVESIRGSLDAPDFFKQITVTFNPWSERHWLKRVFFDEETKRADTFSGTT 201
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
R E +D Y + R+ G++ + F +++ + E
Sbjct: 202 TFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVD--FDVEKTIQ 259
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF-DWSKTDLRTTNNKISGLVEKYRPDAI 372
G D T++ + + L+ + I ++
Sbjct: 260 RVKETSAGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRDKNLHRS 319
Query: 373 IIDANNTGARTCDYLEMLGYH--VYRVLGQKRAVDLEFCR 410
I ++ R ++ G V + G+ +
Sbjct: 320 YIAGDSAEKRLIAEIKSKGVSGIVPSIKGKGSIMQGIQFM 359
>gi|110004640|emb|CAK98975.1| hypothetical terminase large subunit c-terminal truncated protein
[Spiroplasma citri]
Length = 199
Score = 44.5 bits (103), Expect = 0.041, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 6/151 (3%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
+ + + T + + D ++ + +F+ + F WQ F+E
Sbjct: 30 IKKIVSTLVKELKSNKDYYFNHKEANKTISFIEKSCFHTTGEYNKQNFKL-ELWQKAFLE 88
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANSET 118
+ N + + RG GKT L + + L + + +A
Sbjct: 89 ALYGFYDKKTNLRRFKEALLIVE--RGNGKTALASAIALKSLILDNEANAELYSIATKRD 146
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLH 149
Q K + E+ + + + PN +
Sbjct: 147 QAKRV-YEEMRRMIFINPNLNKILKVKRDKI 176
>gi|66394878|ref|YP_239721.1| ORF008 [Staphylococcus phage 85]
gi|148267321|ref|YP_001246264.1| PBSX family phage terminase large subunit [Staphylococcus aureus
subsp. aureus JH9]
gi|150393373|ref|YP_001316048.1| PBSX family phage terminase large subunit [Staphylococcus aureus
subsp. aureus JH1]
gi|189427164|ref|YP_001949840.1| putative terminase, large subunit [Staphylococcus phage phiMR25]
gi|257793419|ref|ZP_05642398.1| phage terminase, large subunit [Staphylococcus aureus A9781]
gi|258418133|ref|ZP_05682398.1| phage terminase [Staphylococcus aureus A9763]
gi|258422108|ref|ZP_05685021.1| phage terminase large subunit [Staphylococcus aureus A9719]
gi|258448907|ref|ZP_05697016.1| phage terminase [Staphylococcus aureus A6224]
gi|258453887|ref|ZP_05701859.1| phage terminase large subunit [Staphylococcus aureus A5937]
gi|282929085|ref|ZP_06336666.1| phage terminase large subunit [Staphylococcus aureus A10102]
gi|295406591|ref|ZP_06816397.1| phage terminase large subunit [Staphylococcus aureus A8819]
gi|297245317|ref|ZP_06929191.1| phage terminase large subunit [Staphylococcus aureus A8796]
gi|62635807|gb|AAX90918.1| ORF008 [Staphylococcus phage 85]
gi|147740390|gb|ABQ48688.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus
subsp. aureus JH9]
gi|149945825|gb|ABR51761.1| phage terminase, large subunit, PBSX family [Staphylococcus aureus
subsp. aureus JH1]
gi|189339075|dbj|BAG48139.1| putative terminase, large subunit [Staphylococcus phage phiMR25]
gi|257787391|gb|EEV25731.1| phage terminase, large subunit [Staphylococcus aureus A9781]
gi|257838926|gb|EEV63405.1| phage terminase [Staphylococcus aureus A9763]
gi|257841903|gb|EEV66339.1| phage terminase large subunit [Staphylococcus aureus A9719]
gi|257857803|gb|EEV80695.1| phage terminase [Staphylococcus aureus A6224]
gi|257863752|gb|EEV86508.1| phage terminase large subunit [Staphylococcus aureus A5937]
gi|282589277|gb|EFB94371.1| phage terminase large subunit [Staphylococcus aureus A10102]
gi|285816567|gb|ADC37054.1| Phage terminase, large subunit [Staphylococcus phage phiSaST5K]
gi|294968736|gb|EFG44759.1| phage terminase large subunit [Staphylococcus aureus A8819]
gi|297177988|gb|EFH37237.1| phage terminase large subunit [Staphylococcus aureus A8796]
gi|315128310|gb|EFT84329.1| phage terminase, large subunit, PBSX family protein [Staphylococcus
aureus subsp. aureus CGS03]
Length = 431
Score = 44.5 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 44/342 (12%), Positives = 91/342 (26%), Gaps = 32/342 (9%)
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
+ N ++ + RG K+ A +++ + +++ + K + + ++
Sbjct: 16 NKFWHNKNFYRV-VKGSRGSKKSKTTAINLIYRIMKYDWANILVVRRFSNTNKQSTYTDL 74
Query: 129 SKWLSLLPNKHWFEMQS----------LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ L H F+ D L +
Sbjct: 75 KWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEA 134
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
+ +TF + + S I + R W+ P F+
Sbjct: 135 YQIETFAKF----STVVESIRGSYDSPEFFKQITVTF-NPWSERHWL---KPT-----FF 181
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ K + + R E +D E Y + R+ G + + F
Sbjct: 182 DEETKLNNTF-SDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDN 240
Query: 299 LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV--VLRRGPVIEHLFDWSKTDLRTT 356
+ + + + G D TVV V+ ++D
Sbjct: 241 FKVED--FDWFEEFKRTQEITHGMDFGFSQDPTTVVSTVVDLKNKKLFIYDEHYKKAM-L 297
Query: 357 NNKISGLVEKYRPDAIII--DANNTGARTCDYLEMLGYHVYR 396
+ I ++ K + I D G R L+ G R
Sbjct: 298 TDDIKQMLIKKGLGDVDIAADYGAGGDRVISELKSKGIKGIR 339
>gi|324115390|gb|EGC09343.1| phage large terminase subunit GpP [Escherichia coli E1167]
Length = 61
Score = 44.5 bits (103), Expect = 0.043, Method: Composition-based stats.
Identities = 7/59 (11%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 416 LHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDG 471
+ +K D + L + + + +++ + + E+ R + A D +
Sbjct: 1 MVLKAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRSATYEASRSEEASHADLAWA 59
>gi|124008727|ref|ZP_01693417.1| hypothetical protein M23134_07327 [Microscilla marina ATCC 23134]
gi|123985803|gb|EAY25676.1| hypothetical protein M23134_07327 [Microscilla marina ATCC 23134]
Length = 536
Score = 44.5 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 43/272 (15%), Positives = 75/272 (27%), Gaps = 22/272 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AG+G GKT + L+S P + AN++ QL + V L + + E
Sbjct: 33 AGQGAGKTHGAGLVSFRLISNFPRVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDEH 92
Query: 144 QSLSLH-----PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ P +S H +K + + H I D
Sbjct: 93 TGEGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAILD 152
Query: 199 EASGTPDV-INLGILGFLTERN-----ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
E T + + ILG L ++ + + S FN +
Sbjct: 153 ETKDTREEAVQEVILGRLRQQGLYISQTRAGALTSEEYDEGSSLANLPFNPLYIFTSPAK 212
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ-----------FPQQDIDSFIPLNI 301
+ + E I + + +V G + ++I
Sbjct: 213 VPWINDWFELNEYEEEIKVKIYDPPQYFKKKVGGDSKFVVISATHLNLKNLPSNYIKKQE 272
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
A +R PL + D +V
Sbjct: 273 ANLASHRHGMLIYGDPLAKSGGEFWKQWDASV 304
>gi|256850663|ref|ZP_05556088.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|256712531|gb|EEU27527.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
Length = 418
Score = 44.5 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 34/363 (9%), Positives = 98/363 (26%), Gaps = 41/363 (11%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLL 135
GRG K+++ + ++ +M ++VIC+ ++ L+ +++ ++
Sbjct: 9 VVCKGGRGSFKSSVISLKLVTMMMFYIAMGKTVNVICIRENQQYLRDSVYNQI------- 61
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
W + + + VG +A+
Sbjct: 62 ---LWAMSILGVESEFRTRVSPMVIQHIRTGSTFYFYGANDPMKLKSNIVG----NVVAV 114
Query: 196 INDEASGTPDVI-NLGILGFLTERNANR----FWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
+E S +V + + + ++ NP R + + +
Sbjct: 115 WFEEFSNLKNVNVFDQSVPTFIRQKPDFVKDVKIFISYNPPRNPYAWVNEWVTQRETDPD 174
Query: 251 FQIDT-----RTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF--IPLNIIE 303
+ +D+ + + I D D R G+ + +++
Sbjct: 175 YFVDSSTYLDDELGFTTKQQLDLIEKYKQNDPDYYRWLYLGEAVGLGTQVYNMKLFKVVD 234
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVV------VLRRGPVIEHLFDWSKTDLRTTN 357
+ E D + + G ++ + + K
Sbjct: 235 RIPDDEYITDIFYGMDTGFMVSATACVACAFTNKYNVYVLDTFYYDPTKYERKLSASEQA 294
Query: 358 NKISGLVEKYRPDAIII-----DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNR 412
++ + + ++ + G Y +M +V A ++ ++
Sbjct: 295 ERVHDFINQITDKYGVLPCNQTIDSADGGIYTQYWQMYNVQWSKVRKLGEAEMIDRVQDL 354
Query: 413 RTE 415
+
Sbjct: 355 AAQ 357
>gi|116196286|ref|XP_001223955.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51]
gi|88180654|gb|EAQ88122.1| hypothetical protein CHGG_04741 [Chaetomium globosum CBS 148.51]
Length = 2013
Score = 44.5 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 48/172 (27%), Gaps = 20/172 (11%)
Query: 57 EFMEVVDA---HCLNSVNNPN-----PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
+ +E + A H N + + + G GKT + W RPG
Sbjct: 1134 QALEEIYAQRFHFFNPMQTQLFHTLYHRPANVLLGSPTGSGKTVAAELAMWWAFRERPGS 1193
Query: 109 SVICLANSETQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L ++ + + + +
Sbjct: 1194 KVVYIAPMKALVRER----VKDWGARLAKPLGLKLVELTGDNTPDTRTIQDADIIITTPE 1249
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1250 KWDGISRSWQTRGYVR-------KVSLVIIDEIHLLAGDRGPILEIIVSRMN 1294
>gi|134298252|ref|YP_001111748.1| hypothetical protein Dred_0375 [Desulfotomaculum reducens MI-1]
gi|134050952|gb|ABO48923.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1]
Length = 526
Score = 44.5 bits (103), Expect = 0.046, Method: Composition-based stats.
Identities = 32/266 (12%), Positives = 78/266 (29%), Gaps = 36/266 (13%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ + +++ N IS R +G TT + LWL TR + + ++ +
Sbjct: 40 ILNEQQDYFYQNMDKFN------IISKSRQLGFTTYSLAYCLWLACTRANTNCLIVSYNV 93
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
++ + + + + +P+K+ P L +++ +
Sbjct: 94 ESTQSI-FERLKQMYASIPDKY-----------KPAEKRNNRIELLLENNSRIIV----- 136
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGI-----LGFLTERNANRFWIMTSNPRR 232
+ ++ E + PD ++ TSN
Sbjct: 137 -KTAGNKSLGRGMTLQYVLLSEFAFYPDDQQRDSLVSLEQALAKNNDSKIVIETTSNGYN 195
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
K + K +K F + HE +A ++ + + ++D
Sbjct: 196 YYQKLFMSAYKGNSKYKSFFFPWFSSAISKQFKHEIELAEKWFRANNKGHRMEPEHLERD 255
Query: 293 IDSF----IPLNIIEEALNREPCPDP 314
+ I ++ + R +
Sbjct: 256 EVALREKGISFKLL---MWRRWKLED 278
>gi|302343154|ref|YP_003807683.1| terminase [Desulfarculus baarsii DSM 2075]
gi|301639767|gb|ADK85089.1| Terminase [Desulfarculus baarsii DSM 2075]
Length = 539
Score = 44.5 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 37/295 (12%), Positives = 67/295 (22%), Gaps = 24/295 (8%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGI 108
R WQ + + V K ++ R GKT L A L L +
Sbjct: 60 RPWQKRIVRALY-----RTRGGRRVVRKALLTLPRKNGKTALAAALALAHLIGPEAEQRG 114
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V A Q + ++AE+ + +P A + S
Sbjct: 115 QVYSAAADRDQA-SIIFAEMEAVIGAVPEF-AARCNVQRFRKAIEDDVTGSVYHALSSDD 172
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER--------NA 220
+ S D + ++ A + + + I +++ +
Sbjct: 173 RKAHGLSPSFVVYDELAQARTRHLFDNLDTGAGARREPLMVVISTQSSDQHHVMTELVDY 232
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA------RYG 274
R + D W D E + R
Sbjct: 233 GRKLLDGVIEDETFLPIIYAAPPDADPWSEDVWRACNPALGDFRALEEMRQFAAQAKRIP 292
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
V + + D + A + P G D+
Sbjct: 293 AKQAVFESLYLNRPTEVDGRFIAQADWNACAGPVDVEALRGRPCWAGLDLGSTTD 347
>gi|300772208|ref|ZP_07082078.1| PBSX family phage terminase [Sphingobacterium spiritivorum ATCC
33861]
gi|300760511|gb|EFK57337.1| PBSX family phage terminase [Sphingobacterium spiritivorum ATCC
33861]
Length = 445
Score = 44.5 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 45/369 (12%), Positives = 91/369 (24%), Gaps = 61/369 (16%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
++ GRG GK+ + V ++ G V+ + ++ E+
Sbjct: 20 ILVTGGRGSGKSFEVSTFVT-RLTFEAGHKVLYSRYTMKSADISVIPEIK---------- 68
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
++ + + S+ +T S + E
Sbjct: 69 -GKIDLDGVSQHFTVKSEDIVNEYSKSEIMFRGIKTSSGNQTANLKSIEGLTTFVGDEME 127
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR--------- 250
+ D + IL + ++ I+ NP Y+ + + +
Sbjct: 128 EWQSEDDYDKLILS-IRKKGIQNRVILIMNPSDDEHFVYKKYIQDTHRVEVIDGVEVQIS 186
Query: 251 -------FQIDTRTV-EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID-------- 294
E + +F I +FP+ +
Sbjct: 187 THPNVLHIHTSYLDNIENVSETFLAEIAEIKRKSEKQAHQAAIAEFPEVHSEEYKRAYHR 246
Query: 295 ---------SFIPLNIIEEAL------NREPCPDPYAPLIMGCDIAEEGGDNTVVVL--- 336
I + A E D P + G D T+V +
Sbjct: 247 AFQRTKYAYVVIGR-WADIAEGVIFTDWEEGDFDESLPYLYGQDYGFSIDPTTLVKVAVD 305
Query: 337 --RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
R+ ++ F ++ Y D II D+ R L LG ++
Sbjct: 306 ERRKRVYVQEKFYSKSQLKLQNVYNMNLAYLDYPNDLIIGDSAED--RLIADLAGLGLNI 363
Query: 395 YRVLGQKRA 403
+
Sbjct: 364 EECDKGPGS 372
>gi|154504557|ref|ZP_02041295.1| hypothetical protein RUMGNA_02062 [Ruminococcus gnavus ATCC 29149]
gi|260590084|ref|ZP_05855997.1| putative phage terminase, large subunit [Blautia hansenii DSM
20583]
gi|153795039|gb|EDN77459.1| hypothetical protein RUMGNA_02062 [Ruminococcus gnavus ATCC 29149]
gi|260539596|gb|EEX20165.1| putative phage terminase, large subunit [Blautia hansenii DSM
20583]
Length = 551
Score = 44.1 bits (102), Expect = 0.047, Method: Composition-based stats.
Identities = 38/311 (12%), Positives = 89/311 (28%), Gaps = 36/311 (11%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--GISVI 111
WQ + V+ E+F I GR GK+ + ++ ++ P G +
Sbjct: 75 WQKAIVSVIFGIQDAEKIRIFREIF---IVIGRKNGKSLFASAIIAYMAYLEPEYGQEIY 131
Query: 112 CLANSETQL---------KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPW---YSDVLH 159
CLA Q E+++ + + + + P + SD +
Sbjct: 132 CLAPKLDQAALVYDGFYQMVQAEDELAELAKKRRSDIYIAESNTVIKPIAFNAKKSDGFN 191
Query: 160 CSLGIDSKH--YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE 217
L + + +S E + +G + I+ + + + +
Sbjct: 192 PQLVVCDEMAAWSGDAGLKQYEVMKSALGARTQPMILSISTAGYINDSIYDELMKRSTS- 250
Query: 218 RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI---DPSFHEGIIARYG 274
+ N + + ++ W + +
Sbjct: 251 -------FLKGNSKERRLLPFLYMIDDVEKWNDIDELKKANPNMGVSVKESFFMDEIAVA 303
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPL---NIIEEA-LNREPCPDPYAPLIMGCDIAEEGG- 329
S + E ++ +S I +E A + + + G D+++
Sbjct: 304 EGSLSKKAEFLTKYCNIKQNSSIAWLEYQTVENAGVEKTLEDFRDCYAVGGIDLSQTTDL 363
Query: 330 -DNTVVVLRRG 339
+VV+ + G
Sbjct: 364 TAASVVIQKDG 374
>gi|310005737|gb|ADP00124.1| DNA maturase beta subunit [Cyanophage NATL1A-7]
Length = 577
Score = 44.1 bits (102), Expect = 0.048, Method: Composition-based stats.
Identities = 48/400 (12%), Positives = 93/400 (23%), Gaps = 68/400 (17%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
W+ + + + + I A RG+GK+ + VLW + P ++ +
Sbjct: 20 WEELDLPSPTRAQYSIADYLQHGPKRLQIQAFRGVGKSWITGAFVLWTLFKDPEKKIMII 79
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
+ S+ + + KH S + + K
Sbjct: 80 SASKERADNMSIFLQKLIIETAWLKHLRPKSEDSRWSRISFDVLCSPHQAPSVKSVGITG 139
Query: 174 RTYSEER----------PDTFVGHHNTYGMAIINDEASGT-------------PDVINLG 210
+ P + + + EA
Sbjct: 140 QLTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKDDSRIMYLGTPQTTFT 199
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK--RFQIDTRTVEGIDPSFHEG 268
+ L ER F P+ L+ I + +D + +
Sbjct: 200 VYRKLAERAYRPFVWPARYPKSLANYEGLIAPQLQEDIDIGAEAGACTDPDRFNDDDLIE 259
Query: 269 IIARYGL-------------------------------------DSDVTRVEVCGQFPQQ 291
A G DS V + ++
Sbjct: 260 REASMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTSVNPYEAPDSVVWCSDPRNV-IKE 318
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL---RRGP-VIEHLFD 347
+P + + + Y I D + G D T + G + +
Sbjct: 319 LPTVGLPGDYFYSPMQLQGEWSKYTETICSVDPSGRGSDETAAAYLSQKNGFIYLHEMRA 378
Query: 348 WSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
+ T I +KY ++I+ N G L
Sbjct: 379 YRDGYTDNTLLNILRGCQKYGVTKLVIE-TNFGDGIVAEL 417
>gi|261420309|ref|YP_003253991.1| type III restriction protein res subunit [Geobacillus sp. Y412MC61]
gi|319767119|ref|YP_004132620.1| type III restriction protein res subunit [Geobacillus sp. Y412MC52]
gi|261376766|gb|ACX79509.1| type III restriction protein res subunit [Geobacillus sp. Y412MC61]
gi|317111985|gb|ADU94477.1| type III restriction protein res subunit [Geobacillus sp. Y412MC52]
Length = 815
Score = 44.1 bits (102), Expect = 0.048, Method: Composition-based stats.
Identities = 48/338 (14%), Positives = 94/338 (27%), Gaps = 51/338 (15%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
PR Q+E +E ++A + + G+GKT L A+ R V
Sbjct: 224 PRFAQVEALERLEAAYEEGYDKAM-------VVMATGLGKTYLAAFFA------RRFSRV 270
Query: 111 ICLANSE---TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ +A+ E Q K + + + L + + E + + + + +
Sbjct: 271 LFIAHREEILRQAKQSFERVIPDRTAGLYDGNQKEGNADMVFASIFTLSMKKHLH----- 325
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
II DE L +T
Sbjct: 326 ------------------SFRPDAFDLIIVDEFHH---AAARSYERVLRYFQPKFLLGIT 364
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ P R K ++ I+ + P + G+ D+D ++++ G
Sbjct: 365 ATPDRSDNKDVYALCDGNVAYRIDFIEAVQRGWLAPFHYYGVY----DDTDYSQIKWLGN 420
Query: 288 FPQQDI--DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL 345
++ + + E+ L L+ I + + R G L
Sbjct: 421 RYDEEELLQVQLREEMAEKILRAWKRYKKTRTLVFCSSI-RQADFLSEYFQRHGCRTVSL 479
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
K + I+ L + +D N G
Sbjct: 480 HS--KQTAISRKQAIAMLERRELDAIFTVDLFNEGVDI 515
>gi|258440753|ref|ZP_05690695.1| phage terminase [Staphylococcus aureus A8115]
gi|282894690|ref|ZP_06302917.1| phage terminase large subunit [Staphylococcus aureus A8117]
gi|257852494|gb|EEV76414.1| phage terminase [Staphylococcus aureus A8115]
gi|282762967|gb|EFC03100.1| phage terminase large subunit [Staphylococcus aureus A8117]
Length = 431
Score = 44.1 bits (102), Expect = 0.048, Method: Composition-based stats.
Identities = 44/342 (12%), Positives = 93/342 (27%), Gaps = 32/342 (9%)
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
+ N ++ + RG K+ A ++ + +++ + K + + ++
Sbjct: 16 NKFWHNKSFYRV-VKGSRGSKKSKTTAINFVYRLMKYDWANILVVRRFSNTNKQSTYTDL 74
Query: 129 SKWLSLLPNKHWFEMQS----------LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ L H F+ D L +
Sbjct: 75 KWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEA 134
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
+ +TF + + S I + R W+ P F+
Sbjct: 135 YQIETFAKF----STVVESIRGSYDSPEFFKQITVTF-NPWSERHWL---KPT-----FF 181
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF-- 296
+ K + + R E +D E Y + R+ G + + F
Sbjct: 182 DEETKLNNTF-SDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFNN 240
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
+ + + + + G +TVV L+ + + + K
Sbjct: 241 FKVEDFDWFAEFKRTQEITHGMDFGFSQDPTTVVSTVVDLKNKKIFIYDEYYKK---AML 297
Query: 357 NNKISGLVEKYRPDAIII--DANNTGARTCDYLEMLGYHVYR 396
+ I ++ K D + I D G R L+ G R
Sbjct: 298 TDDIKQMLIKKGLDDVDIAADYGAGGDRVISELKSKGIKGIR 339
>gi|90961262|ref|YP_535178.1| terminase large subunit [Lactobacillus phage Sal2]
gi|90820456|gb|ABD99095.1| Terminase large subunit [Lactobacillus phage Sal2]
Length = 627
Score = 44.1 bits (102), Expect = 0.048, Method: Composition-based stats.
Identities = 38/324 (11%), Positives = 89/324 (27%), Gaps = 55/324 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PG 107
WQ ++ + +S RG GKT L A L+ +
Sbjct: 99 MDWQKFIFCMLFGWR---NLEGRKRFSRAMVSVARGQGKTYLMAILMCYSYFIESLGLSN 155
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + + Q ++ + + + F+ + ++ + + + +
Sbjct: 156 QDYLVSSINFKQT-NKIFGYIKTMMKHIVKTDMFKDYAATV---GFKAQNDQIVMKEKNN 211
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWI 225
+ + + + I DE + I+ I G + N I
Sbjct: 212 VLRAISHESGQYD--------SYHFTTAIFDEIGEVKSREKISKIISGQVKVPNHQFIQI 263
Query: 226 MTSNP----------------------RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
TS P R I+ + D +
Sbjct: 264 STSYPDPSVPFHEDQKMMQQAMEQDYKRDADNFLGLIWAQDSLDETFKPETWYKSNPLLY 323
Query: 264 SFHEGIIARYG----LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ + G D+D+ + + + + +SF+ L+ IE A+
Sbjct: 324 LDGQKQVLMEGLQDKRDADMLSGNVADFQNKNLNLWLAEATNSFLKLSDIERAIQPNFNI 383
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVL 336
+ + +G D + + + +
Sbjct: 384 E-GRTVYIGYDYSMFSDNTAIAFV 406
>gi|312196810|ref|YP_004016871.1| superfamily I DNA and RNA helicase and helicase subunits-like
protein [Frankia sp. EuI1c]
gi|311228146|gb|ADP81001.1| superfamily I DNA and RNA helicase and helicase subunits-like
protein [Frankia sp. EuI1c]
Length = 468
Score = 44.1 bits (102), Expect = 0.049, Method: Composition-based stats.
Identities = 45/317 (14%), Positives = 73/317 (23%), Gaps = 33/317 (10%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
+ + G GK+TL ++ +A + Q+ + L P+
Sbjct: 39 RGVVVDSPPGAGKSTLVVRAATEFALADEP--LMIVAQTNEQVDDLVEKLARTLLDQAPD 96
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + P D L R + + I
Sbjct: 97 -LRVGRLGRAGYVPPPRIDGLPNVTVGTDMKSLGEPRVTVA-TAAKWAYVKDAAWRFAIV 154
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
DEA L I + F + N D W+ D
Sbjct: 155 DEAYQMRSDALLAI-------ATRFERALFVGDPGQLDPFSTVEN---DRWRGLTWDPMQ 204
Query: 258 VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI----DSFIPLNIIEEALN------ 307
++ R D V R+ V + P+ D+F P
Sbjct: 205 SAV-------AVLLRSNPDLPVHRLPVSWRLPRSAERVVADAFYPFTGFRTGNGPGDRRL 257
Query: 308 --REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
P P G A D V R G + L + V
Sbjct: 258 TFTGTATRPTGPRPAGGPAAGVVDDVLDVAARTGWGLLELPARGTVRTDAEAVRAVAEVA 317
Query: 366 KYRPDAIIIDANNTGAR 382
+ + + GA
Sbjct: 318 RRLLARGPVATSRDGAG 334
>gi|306827214|ref|ZP_07460502.1| PBSX family phage terminase [Streptococcus pyogenes ATCC 10782]
gi|304430571|gb|EFM33592.1| PBSX family phage terminase [Streptococcus pyogenes ATCC 10782]
Length = 435
Score = 44.1 bits (102), Expect = 0.049, Method: Composition-based stats.
Identities = 33/305 (10%), Positives = 73/305 (23%), Gaps = 23/305 (7%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ RG K+ A + + P +++ + K + + + + L H F
Sbjct: 38 VKGSRGSKKSKTTALNFIVRLLKYPWANLLVIRRYSNTNKQSTYTDFKWACNQLKVSHLF 97
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ SL + T +EA
Sbjct: 98 KFNE-SLPEITVKATGQKILFRGLDDELKITSITVDVGA-----------LCWAWFEEAY 145
Query: 202 GTPDV-----INLGILGFLTERN-ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--QI 253
+ I G L + + + + F++ F
Sbjct: 146 QIETEDKFSTVVESIRGTLDVPDFFKQITVTFNPWSERHWLKRVFFDEETKRADTFSGTT 205
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
R E +D Y + R+ G + + F +++ + E
Sbjct: 206 TFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGDWGVAEGLVFDNFEVVD--FDVEKTIQ 263
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF-DWSKTDLRTTNNKISGLVEKYRPDAI 372
G D T++ + + L+ + I ++
Sbjct: 264 RVKETSAGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRDKNLHRS 323
Query: 373 IIDAN 377
I +
Sbjct: 324 YIAGD 328
>gi|291085166|ref|ZP_06570961.1| terminase, ATPase subunit [Citrobacter youngae ATCC 29220]
gi|291072161|gb|EFE10270.1| terminase, ATPase subunit [Citrobacter youngae ATCC 29220]
Length = 106
Score = 44.1 bits (102), Expect = 0.049, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 9/100 (9%)
Query: 299 LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV------VVLRRGPVIEHLFDWSKTD 352
E +R P +G D + G +V I W D
Sbjct: 8 WEDFEPFSDRPFNW---RPAWIGYDPSHTGDSAGCAVLAPPLVAGGKFRILERHQWRGMD 64
Query: 353 LRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
T I L EKY + I IDA + G +
Sbjct: 65 FATQAEAIRELTEKYCVEYIGIDATDIGQGVYQLVRSFFP 104
>gi|148828633|ref|YP_182378.2| DNA packaging terminase subunit 1 [Gallid herpesvirus 1]
gi|5708110|emb|CAB52372.1| terminase [Gallid herpesvirus 1]
gi|329738377|gb|AEB97341.1| DNA packaging terminase subunit 1 [Gallid herpesvirus 1]
Length = 764
Score = 44.1 bits (102), Expect = 0.050, Method: Composition-based stats.
Identities = 45/337 (13%), Positives = 87/337 (25%), Gaps = 37/337 (10%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GKT L+ L+S+ GI + A L+ + + L +
Sbjct: 285 PRRHGKTWFLVPLISLLVSSFEGIRIGYTA----HLRKATEPVFIEIFTRLYKWFGAKQV 340
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ + + +K G + DEA+
Sbjct: 341 EQV------KGETITFTFRNGNKSAIVFA------SSQNTNGLRGQDFNFLFVDEANFIK 388
Query: 205 DVINLGILGFLTERNANRFWIMTSNP-RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
++GFL + N F++ ++N + Y + K
Sbjct: 389 PAALHTVMGFLNQTNCKLFFVSSTNTCHSNTSLLYNLKGKTNSLLNVVTYICDE------ 442
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
I R + + F+ ++ D + I G
Sbjct: 443 -HMPEIQKRTDVTT--------CSCYVLHKPVFVSMDSEVRNTADLFVKDSFMHEIAGGR 493
Query: 324 IAEEGGDNTVVVLR--RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGA 381
+ D T+V +R +I SK ++ ++ V+ A+ TG
Sbjct: 494 AGKYDSDRTLVPVRALDQFLIYRPSTSSKPNISGLGKILTVYVDPAFTTNR--SASGTGI 551
Query: 382 RTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV 418
L + A+ E +
Sbjct: 552 ALVTALRDSMVLMGAEHFYLDALTGEAALEI-AQCVY 587
>gi|296112059|ref|YP_003622441.1| putative terminase large subunit phage [Leuconostoc kimchii IMSNU
11154]
gi|295833591|gb|ADG41472.1| putative terminase large subunit phage [Leuconostoc kimchii IMSNU
11154]
Length = 432
Score = 44.1 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 40/358 (11%), Positives = 94/358 (26%), Gaps = 38/358 (10%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GR K++ + + M + P +V+C LK +++ ++ W
Sbjct: 26 KGGRASTKSSGISIYLAMGMMSDPDANVVCYRKVAGNLKRSVYEQIK----------WAL 75
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + + + + + + +F +
Sbjct: 76 DELHVSWLFRFKTSPMEI-IDRRNGSGFYFSGVDDPSKQKSFKIAKGYVRWLWFEEATEF 134
Query: 203 TPDVINLGILGFLTERNANRFW-----IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR- 256
+ + T + + + PR E DD + T
Sbjct: 135 SNFTEIHTVQLSYTRQKLPKGMQVVTIFSYNPPRNPYDWINEWVESVSDDADFLVVHTTY 194
Query: 257 ---TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
+ + + I D D R + G+ P + +++ + + E D
Sbjct: 195 LDDELHFLSEQYLHDIEKYKHNDYDYYRWQFLGE-PVGLGTNVYKMDLFQRLEHLEDLND 253
Query: 314 PYAPLIMGCDIAEEGGDNTV--VVLRRGPVIEHLFDWS--------KTDLRTTNNKISGL 363
L D+ V + + + W K + I
Sbjct: 254 SVVDLYFSADVGHSVSATAVGCYGVTYHRKVVLIDMWYYSPEGKVDKMAPDDLSKNIHDF 313
Query: 364 VEKYRPDA------IIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
+EK + +D+ Y + G + V K+ ++ +N +
Sbjct: 314 IEKMYAKYGKPISNMTMDSAEASL-RNQYHKDYGVDWHPVAKLKKPDMIDRVQNLLAQ 370
>gi|124004360|ref|ZP_01689206.1| hypothetical protein M23134_05802 [Microscilla marina ATCC 23134]
gi|123990430|gb|EAY29929.1| hypothetical protein M23134_05802 [Microscilla marina ATCC 23134]
Length = 537
Score = 44.1 bits (102), Expect = 0.053, Method: Composition-based stats.
Identities = 42/273 (15%), Positives = 77/273 (28%), Gaps = 23/273 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AG+G GKT + L++ PG+ AN++ QL + V L + + E
Sbjct: 33 AGQGAGKTHGAGLISFRLITNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDEY 92
Query: 144 QSLSLH-----PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ P +S H +K + + H I D
Sbjct: 93 LGQGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAILD 152
Query: 199 EASGTPDV-INLGILGFLTERN---ANRFWIMTSNPRRLSGKFYEIFNKPLDDW---KRF 251
E T + + ILG L ++ + ++ G +
Sbjct: 153 ETKDTREEAVQEVILGRLRQQGLYISQTRVGALTSEEYDEGSPVAANLPFNPLYIFTSPA 212
Query: 252 QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCG-----------QFPQQDIDSFIPLN 300
++ + E I A+ + +V G + ++I
Sbjct: 213 KVPWINDWFELSEYEEEIKAKIYDPPQYFKKKVGGGSKFVVISATHLNLKNLPSNYIQKQ 272
Query: 301 IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
A +R PL + D +V
Sbjct: 273 EANLASHRHGMLIYGDPLAKSGGEFWKQWDASV 305
>gi|313896486|ref|ZP_07830037.1| putative phage terminase, large subunit [Selenomonas sp. oral taxon
137 str. F0430]
gi|312974910|gb|EFR40374.1| putative phage terminase, large subunit [Selenomonas sp. oral taxon
137 str. F0430]
Length = 533
Score = 44.1 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 58/458 (12%), Positives = 114/458 (24%), Gaps = 78/458 (17%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFF----PWGEKGTPLEGFSAPRSWQL 56
M + P T+ D + F+ W K L WQ
Sbjct: 1 MRKLTDYTP-TKFMAEDAHYDKAAADYAVGFIECLCHTKGTWAGKPFELI------DWQE 53
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLA 114
+ + + + I G+ GK+ L A + L L V A
Sbjct: 54 RIIRDIFGILKPNGYR---QFNTAYIEIGKKNGKSELAAAVALLLCCGDGEERAEVYGCA 110
Query: 115 NSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
Q + ++ + + + P ++ + ++ + L ++
Sbjct: 111 ADRQQA-SIVFEVAADMVRMCPALGKRVKILASQKRMVYLPTNSFYQVLSAEA----YSK 165
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIM------- 226
++ F H + + G+ D + +T + I
Sbjct: 166 HGFNIHGV-VFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTQSICYETHQKA 224
Query: 227 --TSNPRRLSGKFY--EIFNKPLDDWKRFQIDTRTVE------GIDPSFHE-GIIARYGL 275
R++ FY K +DW ++ R+ GID +
Sbjct: 225 KDILEGRKIDSTFYPVIYGAKEDEDWTDPEVWKRSNPSLGITVGIDKVQAACDSARQNPA 284
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG------ 329
+ + R Q+ +Q + AL + G D++
Sbjct: 285 EENSFRQLRLNQWVKQSVRWMPMDKWDACALPVDAESLTGRVCYGGLDLSSTTDVTAFVL 344
Query: 330 ------------------------------DNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
D+ + + + +
Sbjct: 345 VFPPTEEDEPFAVLPYFWIPEENIDLRVRHDHVPYDVWQRQGFLQTTEGNVVHYGFIEAF 404
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I L EKY I D + LE +G+ V
Sbjct: 405 IEKLGEKYNIREIAFDRWGA-VQMVQNLEGMGFTVVPF 441
>gi|9632419|ref|NP_049391.1| putative terminase small subunit [Streptococcus phage DT1]
gi|4530139|gb|AAD21879.1| putative terminase small subunit [Streptococcus phage DT1]
Length = 229
Score = 44.1 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 10/124 (8%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PG 107
WQ + ++ + + +S GRG GKT L A L +
Sbjct: 99 MPWQKFILCMLFGWRNANGGK---RFSRAIVSVGRGQGKTYLMAILTAYSYFIESLGLSN 155
Query: 108 ISVICLANSETQLKTTLW---AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
+ + + Q L + + + + P K L LH + L
Sbjct: 156 QDYLVTSINFKQTNKLLGYIKSMMKQIIQNEPFKSLANETELGLHSDQVIMKANNNVLRA 215
Query: 165 DSKH 168
S
Sbjct: 216 ISAE 219
>gi|83722583|ref|YP_443861.1| DNA packaging terminase subunit 1 [Papiine herpesvirus 2]
gi|75905736|gb|ABA29268.1| UL15 [Papiine herpesvirus 2]
Length = 735
Score = 44.1 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 33/266 (12%), Positives = 71/266 (26%), Gaps = 20/266 (7%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
F+ +V L S + + R GKT L+ +++ GI + A+
Sbjct: 231 FLRLVFEIPLFSDAAVRHFRQRATVFLVPRRHGKTWFIVPLIALSLASFRGIKIGYTAH- 289
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ ++ E+ L + + T
Sbjct: 290 IRKATEPVFDEIDACLQGWFGSSRVDHVKGETISFSFPDGSR---------------STI 334
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSG 235
G + DEA+ I+GFL + N ++ ++N + +
Sbjct: 335 VFASSHNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQANCKIIFVSSTNTGKASTS 394
Query: 236 KFYEIFNKPLDDWKRFQIDTRT-VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
Y + + + + + + Y L+ V G +
Sbjct: 395 FLYNLRGAADELLNVVTYICDDHMPRVVTHTNATACSCYILNKPVFITM-DGALRRTADL 453
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIM 320
+ E + D P++
Sbjct: 454 FLADSFMQEIIGGQSREADADRPVLT 479
>gi|227505813|ref|ZP_03935862.1| phage terminase [Corynebacterium striatum ATCC 6940]
gi|227197594|gb|EEI77642.1| phage terminase [Corynebacterium striatum ATCC 6940]
Length = 378
Score = 44.1 bits (102), Expect = 0.056, Method: Composition-based stats.
Identities = 41/309 (13%), Positives = 78/309 (25%), Gaps = 39/309 (12%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
GKT A L+L L++ G + I + ++ FE
Sbjct: 33 RSGKTYTWAILMLSLVAAYTGSAAIVITGK---------------NRDSIYRNVFEPIET 77
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
P V++ + + DE +
Sbjct: 78 LTLFIPVKKYVVYRQGAPRATIFGKQVHIIGANDAGAESKIRGMTIGLAFADEITLLHPA 137
Query: 207 INLGILGFL----------TERNANRFWIMTSNPRRLSG-KFYEIFNKPLD---DWKRFQ 252
+L L T ++ W+ R+ G Y+ +P + DW +
Sbjct: 138 FFKQLLSRLSKSYSKLFCTTNPDSQNHWLRKDYLVRVPGCMHYDTKTQPENQLTDWTYWH 197
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ ++ + Y + G + + I E +P
Sbjct: 198 FTMDDNPSLTTAYKNNLKKEY--TGMWFLRFIQGLWVAAEGA--IYSMWDESKHVVDPED 253
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVL------RRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
P I+ I T ++ R+ ++ T+ T + L
Sbjct: 254 MPPMETIIALGIDYGTTHPTTGIMLGMGTDRKLYAVDEWAPGRLTNAALTADLKEWLTSH 313
Query: 367 YRPDAIIID 375
P I D
Sbjct: 314 DYPQWIYYD 322
>gi|213580952|ref|ZP_03362778.1| hypothetical protein SentesTyph_07004 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 67
Score = 44.1 bits (102), Expect = 0.056, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 18/54 (33%)
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
I W D R + I L E+Y I ID+ G + ++
Sbjct: 14 KFRILERHQWRGMDFRAQADAIKKLTEQYNVTYIGIDSTGVGHGVYENVKAFFP 67
>gi|254426260|ref|ZP_05039976.1| Type III restriction enzyme, res subunit family [Synechococcus sp.
PCC 7335]
gi|196187674|gb|EDX82640.1| Type III restriction enzyme, res subunit family [Synechococcus sp.
PCC 7335]
Length = 1137
Score = 44.1 bits (102), Expect = 0.057, Method: Composition-based stats.
Identities = 44/336 (13%), Positives = 93/336 (27%), Gaps = 38/336 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
RS+Q E + V H K + G GKT L+ L + V+
Sbjct: 357 RSYQQEAIRQVTEHFEQHKAR------KALLVMATGTGKTRTAIALIDVLKTANWAKRVL 410
Query: 112 CLANSETQLKTTLWAEVSKWLSL-LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
LA+ +T L + + LP+ + ++V+ + G +
Sbjct: 411 FLAD-----RTALLTQAYRAFKTHLPSVTPINLTENKNSQQIESANVVLSTYGTMLNAIN 465
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA---NRFWIMT 227
P F I ++ + + ++G A + +
Sbjct: 466 RTGSEQRFFGPGYFDLIVVDEAHRSIYNKYGAVFEYFDGLLVGLTATPRAELDRDTYRIF 525
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGII---ARYGLDSDVTRVEV 284
+ + YE+ N D + + + + + R E
Sbjct: 526 ELQQGVPTFAYELDNAVEDGYLVPPVGVNVPFKFLRNGVKYQDLSPEEKLEYEEKFRDEE 585
Query: 285 CGQFPQQDID-----SFIPLNIIEEA----LNREPCPDPYAPLIMGCDIAEEGGDNTVVV 335
G+ P Q + +++A + R + L T+V
Sbjct: 586 TGEVPDQVNAAAINKWLFNTDTVDQALQLLMERGLKVEGGDQL-----------GKTIVF 634
Query: 336 LRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
R E + + + + +++ + A
Sbjct: 635 ARTHEHAEFIVSRFDLNYPHLKGQFAQVIDSHNAYA 670
>gi|167385831|ref|XP_001737507.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Entamoeba dispar
SAW760]
gi|165899662|gb|EDR26206.1| U5 small nuclear ribonucleoprotein 200 kDa helicase, putative
[Entamoeba dispar SAW760]
Length = 1804
Score = 44.1 bits (102), Expect = 0.057, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 11/137 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT +L + P V+ +A + +K + S W L
Sbjct: 1024 VIVGAPTGSGKTVAAELCMLKIFRDTPDKKVVYIAPMKALVKEKM----SDWKDKLITMG 1079
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
++ + + + + + R ++++ VG +I DE
Sbjct: 1080 KNIVELTGDFTPDSAAIAKADVILTTPEKWDGITRLWTKKSYVQKVG-------LVILDE 1132
Query: 200 ASGTPDVINLGILGFLT 216
+ I +T
Sbjct: 1133 VHLLGEERGPVIEAIVT 1149
>gi|238581544|ref|XP_002389644.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
gi|215452133|gb|EEB90574.1| hypothetical protein MPER_11197 [Moniliophthora perniciosa FA553]
Length = 633
Score = 44.1 bits (102), Expect = 0.059, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 6/149 (4%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA-----EVSKWLSLLPNKHWF 141
G GKT +L L+S P ++ A S + E + + P++
Sbjct: 480 GTGKTVTAVEAILQLLSANPNARILACAPSNSAADLIAMRLRSLGESGLFRAYAPSRDRE 539
Query: 142 EMQ-SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
++ L + L K + + T +G + I DEA
Sbjct: 540 QVPHELLPFTYQNATGHFSVPLLSRMKRFRAVVTTCVSANIIAGIGIPRGHYTHIFVDEA 599
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSN 229
+ + + + + N N
Sbjct: 600 GQATEPEVMIAIKTMADMNTNVVLSGDPK 628
>gi|310792137|gb|EFQ27664.1| Sec63 Brl domain-containing protein [Glomerella graminicola M1.001]
Length = 1974
Score = 44.1 bits (102), Expect = 0.059, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMST-RPGI 108
+E + A N ++F + + G GKT + A L +W RPG
Sbjct: 1119 ALEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKT-VAAELAMWWAFRERPGS 1177
Query: 109 SVICLANSETQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L ++ + + + +
Sbjct: 1178 KVVYIAPMKALVRER----VKDWGARLARPLGLKLVELTGDNTPDTRTIKDADIIITTPE 1233
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1234 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLAGDRGPILEIIVSRMN 1278
>gi|158293118|ref|XP_314465.4| AGAP010491-PA [Anopheles gambiae str. PEST]
gi|157016805|gb|EAA09908.4| AGAP010491-PA [Anopheles gambiae str. PEST]
Length = 1008
Score = 44.1 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 15/159 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q + + P +++AGRG GK+ L + ++V +
Sbjct: 254 QAKAVAQFIDALAEKQLKPP-----TSLTAGRGRGKSAAM-GLAIAGSIAFGYVNVYVTS 307
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
S L T L+ + K +L + + + + ++ ++ +++
Sbjct: 308 PSPENLIT-LFEFILKGFDVLEYQEHTDYTIIRSTNPNFNKAIIRINITRNNRQTIQYIS 366
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG 213
+ +I DEA+ P + +LG
Sbjct: 367 PTDAHLLNAAD--------LLIIDEAAAIPLPMVRAMLG 397
>gi|291229355|ref|XP_002734640.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 1465
Score = 43.7 bits (101), Expect = 0.062, Method: Composition-based stats.
Identities = 49/396 (12%), Positives = 103/396 (26%), Gaps = 32/396 (8%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC----LA 114
++ VD H + N + I G+GKTTL + + T P + A
Sbjct: 302 LKEVDRHVMKDDENFADKPL--LIVGDSGVGKTTLLSNWLHRHQQTHPDDIIAYHFVGCA 359
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
T L V KH + + + + ++
Sbjct: 360 PKTTSETDVLSRIVEDLKYGYKKKHNEKYEDEKNENVKSEKPKTVLDYYRELQEVLSLIN 419
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
G + + E P I G+ ++ + N R+
Sbjct: 420 ENGYHAVIIIDGVNKMDDIGKTKKELYWLPKDIPKGVSLLISCLKDDISKTDEFNERQFD 479
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
E N + I + + + ++ + ++ + + +
Sbjct: 480 ILSVEKLNTEQKEQMMQAILSLRGKELSSEQKLRLMNKEETENPLYLKILLQELVNFGD- 538
Query: 295 SFIPLN-----IIEEALNREPCPDPYAPLIMGCDIAEEGGD------NTVVVLRRGPVIE 343
F L+ I++ E L + + + + ++V R G +
Sbjct: 539 -FFKLDDHIDYILQANSTTELFMKILERLEKDFNSVDSEDNVVAKVMSCILVSRYGLSDQ 597
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
+ + ++ L + +ID D L Y
Sbjct: 598 EIKSIINLPDQLWSSIYFALED------FLIDREGIYGFAYDELSSAVKERYCHGNDNID 651
Query: 404 VDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNL 439
+ F N K+ + + S +I L
Sbjct: 652 MVAAFFEN-------KLKELGPDHRVNIPSRIINEL 680
>gi|291563675|emb|CBL42491.1| phage uncharacterized protein (putative large terminase),
C-terminal domain [butyrate-producing bacterium SS3/4]
Length = 544
Score = 43.7 bits (101), Expect = 0.066, Method: Composition-based stats.
Identities = 72/522 (13%), Positives = 158/522 (30%), Gaps = 60/522 (11%)
Query: 1 MSRELPTNPETEQKLFDLMWSDE---IKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLE 57
+ +P + ET+++L L + + + +F + + P + F PR E
Sbjct: 51 IENRIPQS-ETDKELRSLFMLHKKVLLAAAPFDFESYLLYVEWEREPDKKFYVPR---RE 106
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
M V + + + IS G GK+TL + + W+M P + A+S
Sbjct: 107 VMHPV---VQAMQDLIDDRLDLLTISMPPGTGKSTLGIFFLSWVMGRFPDSQSLASAHS- 162
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
L + + + + ++ ++ + KH + T
Sbjct: 163 ----GMLTRSFYDGVYQIITDSEYLWADVFPGVKMAATNSKEETIDLHKKHRFST-LTCR 217
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL------------TERNANRFWI 225
+ +D SG + ++ L L E
Sbjct: 218 AINASLTGATRCDK-ILYADDLCSGIEEAMSKERLDKLWSAYTNDLKSRKKEGAKEIHIA 276
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE-----------GIDPSFHEGIIARYG 274
+ + G+ E K + + G + E +
Sbjct: 277 TRWSVHDVIGRL-ENQYGGDSRAKFIVLPALDADGESNFNYTYGVGFSRHYFEDMR--NN 333
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV 334
LD + Q +++ + ++ E E + +I CD ++G D +
Sbjct: 334 LDEASFKALFMNQPIEREGLLY---DVDELRRYFELPAEDPDAIIGICDTKDKGSDYAFL 390
Query: 335 --VLRRGPVIEHLFDWSKTDLRTTNN-KISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
G L + ++ ++ + + ++N+ G R + ++
Sbjct: 391 PAAYVYGNDYYIDDCVCDNSLPNIVDARLVDILLRCKVKMCRFESNSAGGRVAEKVQNEV 450
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTG 451
+ R N+ T++ V A W++ L L + S ++ G
Sbjct: 451 KKRGGIT---RITTKFTTANKETKIIVNSA-WVKEHCLFKDDSLYKRQ-SDYGRMMDMLG 505
Query: 452 ELAIESKRVKGAKSTDYSDGLMYT--FAENPPRSDMDFGRCP 491
+ K D DG+ FA++ + ++ + P
Sbjct: 506 SYTVAGKNK----HDDVPDGMAMLAEFAQSLSGARVEVFQRP 543
>gi|153933850|ref|YP_001385269.1| putative phage terminase, large subunit [Clostridium botulinum A
str. ATCC 19397]
gi|152929894|gb|ABS35394.1| putative phage terminase, large subunit [Clostridium botulinum A
str. ATCC 19397]
Length = 548
Score = 43.7 bits (101), Expect = 0.068, Method: Composition-based stats.
Identities = 37/342 (10%), Positives = 82/342 (23%), Gaps = 25/342 (7%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP----GI 108
W+L ++ + ++ + I GRG GK + + W ++T G
Sbjct: 69 DWELFIFALIHCYY---KSSDMVVFDEFLIVMGRGNGKNGFISPVS-WYLTTHYHGIKGY 124
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLP---------NKHWFEMQSLSLHPAPWYSDVLH 159
+V +ANSE Q +T+ + +V + L K + + S+
Sbjct: 125 NVDIIANSEDQAETS-FNDVYEVLEKTWKKSKKFFTKTKEIITNTKTNSYIKYNTSNAKT 183
Query: 160 CSLGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
+ Y + G I V++ +
Sbjct: 184 KDGKRSACLIFDEIHEYENYDTIKVFTSGFGKRKHSRTFYITTNGYVRDGVLDEQLQLGK 243
Query: 216 TERNANRFWIMTSNPRRLSGKFYEIFNKPLD-DWKRFQIDTRTVEGIDPSFHEGIIARYG 274
+ + K E N + ++ + + +
Sbjct: 244 DVLDGKIKDLGLLPLIYKIDKKEEYKNPDMWVKANPSLPYFTELQKEMKKAFKKMKYQNH 303
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV- 333
+ D + + II+ + D A +
Sbjct: 304 IALDFMTKRMNMPAQDNFTAAVPWEKIIKTNRTIPYKDLQGMQCLGALDYAMVTDFASCG 363
Query: 334 -VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ G + ++ K +I
Sbjct: 364 LLFKYNGLRYWVEHTFVCHKALEIESRPIKFPVKEMEQRGLI 405
>gi|115375896|ref|ZP_01463145.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|115367074|gb|EAU66060.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
Length = 172
Score = 43.7 bits (101), Expect = 0.068, Method: Composition-based stats.
Identities = 19/176 (10%), Positives = 44/176 (25%), Gaps = 20/176 (11%)
Query: 320 MGCDIAEEGGDNTVVVLRR----GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
G DI D + + + L + + + + +D
Sbjct: 2 AGFDIGRTR-DRSELAVFEEVAGRFTCRMLKSFEGVPFAEQEAHLRRFLSVLPVARLSVD 60
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHV-KMADWL--EFASLINH 432
+ G + L V + + L +L
Sbjct: 61 RSGIGMNLAENLARDFPQVVAENFTNESKER----------WATDFKILLQRRDVTLPRE 110
Query: 433 SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTFAENPPRSDMDFG 488
L+ + S+K V +G+++ +++R D ++ G
Sbjct: 111 RELVGQIHSIKR-RVLPSGKVSFDAERTNRG-HADKFWAVVLACQRERGPERRGTG 164
>gi|297242701|ref|ZP_06926639.1| phage terminase, large subunit [Gardnerella vaginalis AMD]
gi|296888912|gb|EFH27646.1| phage terminase, large subunit [Gardnerella vaginalis AMD]
Length = 530
Score = 43.7 bits (101), Expect = 0.069, Method: Composition-based stats.
Identities = 35/297 (11%), Positives = 75/297 (25%), Gaps = 30/297 (10%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVI 111
WQ + + + + + I + +GK+ L A + L L V
Sbjct: 48 WQEQIIRDLFGVVKPNGYR---QFNTAYIEIPKKMGKSELAAAVALLLCCGDNEERAEVY 104
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A Q T ++ + + + P + ++ L+ + + ++ YS
Sbjct: 105 GCAADRQQA-TIVFDVAADMVRMCPALNR-RVKILASQKRIIFLPTNSFYQVLSAEAYSK 162
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
F H + + G+ D + +T + I +
Sbjct: 163 HGFNI---HGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTHSICYETHQ 219
Query: 232 RLSGKFYE-----------IFNKPLDDWKRFQIDTRTVEGI--------DPSFHEGIIAR 272
+ K DDW ++ + + + E
Sbjct: 220 KAVDILEGRKIDPTFYPVIYGAKDSDDWTDPKVWKKANPSLGVTVQMEKVKAAFESARQN 279
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
G + R Q+ +Q I G D++
Sbjct: 280 PGE-ENAFRQLRLNQWVKQSIRWMPMEKWDACGFQVNEEELEGRVCYGGLDLSSTTD 335
>gi|295672069|ref|XP_002796581.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb01]
gi|226283561|gb|EEH39127.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb01]
Length = 2012
Score = 43.7 bits (101), Expect = 0.069, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMST-RPGI 108
+E + N ++F + + G GKT + A L +W RPG
Sbjct: 1129 ILEEIYGQRFQFFNPMQTQIFHTLYHTPTNVLLGSPTGSGKT-VAAELAMWWAFRERPGS 1187
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1188 KVVYIAPMKALVRER----VHDWKRRLTVPMGLKLVELTGDNTPDTRTIRDADIIITTPE 1243
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1244 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGSDRGPILEIIVSRMN 1288
>gi|157113448|ref|XP_001657833.1| hypothetical protein AaeL_AAEL006469 [Aedes aegypti]
gi|108877720|gb|EAT41945.1| conserved hypothetical protein [Aedes aegypti]
Length = 1005
Score = 43.7 bits (101), Expect = 0.073, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 15/159 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q + + P +++AGRG GK+ L + ++V +
Sbjct: 255 QAKAVAQFIDALAEKQLKPP-----TSLTAGRGRGKSAAM-GLAISAAIAFGYVNVYVTS 308
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
S L T L+ + K L + + + + ++ ++ +++
Sbjct: 309 PSPENLIT-LFEFIMKGFDALEYQEHTDYTIIRSTNPDFNKAIIRINITRNNRQTIQYIS 367
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG 213
+ +I DEA+ P + +LG
Sbjct: 368 PSDAHLLNAAD--------LLIIDEAAAIPLPLVKAMLG 398
>gi|134299975|ref|YP_001113471.1| hypothetical protein Dred_2129 [Desulfotomaculum reducens MI-1]
gi|134052675|gb|ABO50646.1| conserved hypothetical protein [Desulfotomaculum reducens MI-1]
Length = 527
Score = 43.7 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 32/266 (12%), Positives = 78/266 (29%), Gaps = 36/266 (13%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ + +++ N IS R +G TT + LWL TR + + ++ +
Sbjct: 41 ILNEQQDYFYQNMDKFN------IISKSRQLGFTTYSLAYCLWLACTRANTNCLIVSYNV 94
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
++ + + + + +P+K+ P L +++ +
Sbjct: 95 ESTQSI-FERLKQMYASIPDKY-----------KPAEKRNNRMELLLENNSRIIV----- 137
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGI-----LGFLTERNANRFWIMTSNPRR 232
+ ++ E + PD ++ TSN
Sbjct: 138 -KTAGNKSLGRGMTLQYVLLSEFAFYPDDQQRDSLVSLEQALAKNNDSKIVIETTSNGYN 196
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
K + K +K F + HE +A ++ + + ++D
Sbjct: 197 YYQKLFMSAYKGNSKYKSFFFPWFSSATSKQFKHEIELAEKWFRANNKGHRMEPEHLERD 256
Query: 293 IDSF----IPLNIIEEALNREPCPDP 314
+ I ++ + R +
Sbjct: 257 EVALREKGISFKLL---MWRRWKLED 279
>gi|195124341|ref|XP_002006652.1| GI18468 [Drosophila mojavensis]
gi|193911720|gb|EDW10587.1| GI18468 [Drosophila mojavensis]
Length = 1373
Score = 43.7 bits (101), Expect = 0.075, Method: Composition-based stats.
Identities = 37/365 (10%), Positives = 93/365 (25%), Gaps = 47/365 (12%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
+ G+GKT + A ++ L P +I +A + + +
Sbjct: 61 YQHSIVQAALYRNTLVVLPTGLGKTFIAAVVMYNLHRWYPESKLIFMAPT----RPLVAQ 116
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
+++ ++P ++ L + + + + DT G
Sbjct: 117 QIAACQKIMPF-----CPEDTVELTGRLPRAKRAELWATKRVFFATPQVVQSDMLDTGDG 171
Query: 187 HHNTYGM--AIINDEASGTPDVINLG-ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
Y ++ DEA + L RN + S + + +
Sbjct: 172 LQFPYMSIKLLVVDEAHRAKGRYAYTQVTDSLMARNPYFRMLALSATPGRTMEDVAAVCR 231
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
I V D + + + + V + + P+ ++ I + +
Sbjct: 232 N------LCISHLEVRWDDSIDVRQYVHKRSMRTIVVPLNDRIKEPRAELLQIIDPYLRQ 285
Query: 304 EALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL 363
V+ RG + + + ++ + +
Sbjct: 286 LIT------------------------ANVLKGARGNISRNNLLFDQSRYQEHVARGERH 321
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADW 423
E + + + LE G V+ + + + +
Sbjct: 322 PEHSLIVSNFAMCISL-YHALELLERHGLRVFVNNFDADENGRDKFV-LKDPA---LREL 376
Query: 424 LEFAS 428
+E
Sbjct: 377 VEKVR 381
>gi|9633040|ref|NP_050148.1| hypothetical protein phiadhp40 [Lactobacillus phage phiadh]
gi|5730297|emb|CAB52518.1| hypothetical protein [Lactobacillus phage phiadh]
Length = 624
Score = 43.7 bits (101), Expect = 0.076, Method: Composition-based stats.
Identities = 49/351 (13%), Positives = 99/351 (28%), Gaps = 58/351 (16%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFK 79
+ + F P + G P + WQ ++ N +
Sbjct: 72 YDVDEANRLLRFAK-ICPNVDTGEP----TKLMEWQEFTFALMFGWRDKDNNK---RFTR 123
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTR----PGISVICLANSETQLKTTLWAEVSKWLSLL 135
S RG GKT A LV + + + + Q L+ V+ + +
Sbjct: 124 VIDSVARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMK-LFGYVASMMRKI 182
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
F+ + ++ Y + ++ + + +H +
Sbjct: 183 IQIEPFKSYANEVNL---YIQSDQIIMKKNNNVLRAISLE-----AGQYDSYHFRTAIFD 234
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF----NKPLDDWKRF 251
E + ++ I G + N I TS P + F+E DWKR
Sbjct: 235 EIGEVKS-RETVSKIISGQVKVSNHQFIQISTSYPD-PTVPFHEDQKMIIQAMEQDWKRD 292
Query: 252 QID-----TRTVEGIDPSFHEGIIARYG------------------LDSDV-------TR 281
+ E + DSD+ +
Sbjct: 293 ADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQ 352
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
+ + +Q DS++ L +E+A+ + D + + +G D + +
Sbjct: 353 TKNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHE-VFIGFDYSMFSDNTA 402
>gi|331269396|ref|YP_004395888.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
BKT015925]
gi|329125946|gb|AEB75891.1| phage terminase, large subunit, PBSX family [Clostridium botulinum
BKT015925]
Length = 419
Score = 43.7 bits (101), Expect = 0.077, Method: Composition-based stats.
Identities = 33/359 (9%), Positives = 92/359 (25%), Gaps = 20/359 (5%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGA--ISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
Q ++ + A + ++ + GRG K++ + ++ ++++
Sbjct: 4 QRVKLKSIIAPSFHQIHKDIKSGLYTHHWLKGGRGSTKSSFISIEII--------LNIMK 55
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+ E ++ V L + + W + L S +
Sbjct: 56 DSQEEKLTNAVIFRRVKDTLRGSVFEQMLWAIGKLKCESQWEVNFSPLKLTFKSTGQVVL 115
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNP 230
+ + Y I +E D I + + + P
Sbjct: 116 FKGADNPLKMKSIKVAKGYIKYIWYEEVDEFEGYDKIRNINQSLMRGGPKFCVFYSFNPP 175
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
+ D + +V + F ++ + G
Sbjct: 176 ESQRNWANMEVLQTRKDKLVHHSNYLSVPKEWLGEQFILEAEHIKKVNPTKYEHDYLGAV 235
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG--DNTVVVLRRGPVIEHLF 346
+ F + + + + G D TV + ++F
Sbjct: 236 TGTGGEVF---TNVTIRKMTDEEIANFDRVHRGLDFGYASDPLHYTVNHYDKTRRRLYIF 292
Query: 347 DWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
+ ++ + + ++ + + I+ + T + LG + +V+
Sbjct: 293 YEIHKAGMSNSSAVETIKQENKSNNRIVADSAEPR-TIAEFKKLGLKIIGAKKGPDSVE 350
>gi|326435438|gb|EGD81008.1| ASCC3L1 protein [Salpingoeca sp. ATCC 50818]
Length = 2150
Score = 43.7 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 29/222 (13%)
Query: 6 PTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGT---------PLEGFSAPRSWQL 56
P P+ ++ W + +F P T P+ P ++Q
Sbjct: 1260 PMPPQYFVRVVSDRWIGSETVLPISFRHLILPERFPPTTELLDLQPLPVTALKKP-AYQR 1318
Query: 57 ------EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
++ + N++ + + VF + A G GKT +L S P
Sbjct: 1319 FYVNRFKYFNAIQTQVFNALYDSDDNVF---VGAPTGSGKTVCAELAMLRSFSQNPNAKC 1375
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
I +A + + + + K + A + + +
Sbjct: 1376 IYVAPLQE-VCNRMLPAWKEMFGKGLGKTVVGLTGDM--SADLKLLASANVVVATPEQWD 1432
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
+ R + + R H I D+A +
Sbjct: 1433 VLSRRWKQRR-------HVQNIALFIVDDAHMIGAENGPVLE 1467
>gi|253991590|ref|YP_003042946.1| DNA-dependent helicase II [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211638468|emb|CAR67090.1| dna helicase ii (ec 3.6.1.-) [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253783040|emb|CAQ86205.1| DNA helicase II [Photorhabdus asymbiotica]
Length = 723
Score = 43.7 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 49/377 (12%), Positives = 100/377 (26%), Gaps = 43/377 (11%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+E ++ +V P + + AG G GKT + + WL+S +A +
Sbjct: 9 LLESLNDKQREAVAAPRTNML---VLAGAGSGKTRVLVHRIAWLLSVENASPFSIMAVTF 65
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
T AE+ + L M W + + H+
Sbjct: 66 T---NKAAAEMRHRIENLIGTSQGGM---------WIGTFHGLAHRLLRAHHLDANLPQD 113
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ D+ + + +A D + +
Sbjct: 114 FQILDSED----QHRLLKRIIKAMNLDDKQWPARQAMWYINGKKDEGLRPQHIESYGNPV 169
Query: 238 YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
++K + +Q +D + L+ G+F +D F
Sbjct: 170 EMTWHKV---YLAYQEACDRAGLVDFAELLLRAHELWLNKPQILQHYRGRFTNILVDEFQ 226
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD----WSKTDL 353
N I+ A + +I+G D+ + RG +E++ +S +
Sbjct: 227 DTNSIQYAWIHLLAGETGNVMIVG-------DDDQSIYGWRGAQVENIQRFLKDFSGAET 279
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR--AVDLEFCRN 411
+ +I N+ L G + +D
Sbjct: 280 IRLEQNYRSTSNILKVANTLIANNSDRLG--KNLWTDGVEGEPISLYSAFNELDEARYV- 336
Query: 412 RRTELHVKMADWLEFAS 428
++ +WLE
Sbjct: 337 -----VSRIKNWLENGG 348
>gi|188579188|ref|YP_001916117.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188523640|gb|ACD61585.1| DNA helicase II [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 728
Score = 43.7 bits (101), Expect = 0.079, Method: Composition-based stats.
Identities = 49/378 (12%), Positives = 102/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 14 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 60 VTFT---NKAAGEM---------RHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 107
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + S P + + I
Sbjct: 108 PEGFQVMDSDDQLRLVKRVVQALELDESKYPPKQLSWWINEQKDEGRRPQHIQPEPNDDW 167
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ + +D + D+ +F + +
Sbjct: 168 TEVRRQVYAAYQER-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 220
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 221 DEFQDTNAIQYAFVRVLAGESGNVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 271
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 272 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGDGDPIDLYAAYNEV 328
Query: 414 TE---LHVKMADWLEFAS 428
E + + W+
Sbjct: 329 DEARYMVERARQWVRDGG 346
>gi|163868206|ref|YP_001609414.1| phage related protein [Bartonella tribocorum CIP 105476]
gi|163869068|ref|YP_001610302.1| hypothetical protein Btr_2286 [Bartonella tribocorum CIP 105476]
gi|161017861|emb|CAK01419.1| phage related protein [Bartonella tribocorum CIP 105476]
gi|161018749|emb|CAK02307.1| phage-related protein [Bartonella tribocorum CIP 105476]
Length = 442
Score = 43.7 bits (101), Expect = 0.079, Method: Composition-based stats.
Identities = 33/267 (12%), Positives = 70/267 (26%), Gaps = 28/267 (10%)
Query: 84 AGRGIGKTTLNAWLVLW----LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GRG GKT A + +++C + L + E+ + +
Sbjct: 27 GGRGSGKTRSFALMAALKGYQFGMQGISGTILCARQFQNSLAESSLEEIKRAIE------ 80
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + + + + DE
Sbjct: 81 -----AHDFLSEYYKVGEASIKSNDGRIAFQFSGLDRNIASIKSMGRI-----LLCWVDE 130
Query: 200 ASGTPDVINLGILGFLTERNANRF--WIMTSNPRRLSGKFYEIFN-KPLDDWKRFQIDTR 256
A + ++ L E +T NP R + F + KR +I+
Sbjct: 131 AEPVTETAWQTLIPTLREEGDGWRAELWVTWNPLRDNAPVESRFRFSDNEAIKRVEINWS 190
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII---EEALNREPCPD 313
+E + + + G + ++ ++ +E D
Sbjct: 191 DNPKFPKILNEARLDDLRNRPETYKHIWEGAYLTAVQGAYYQKEMLAAEQEGRIGRVARD 250
Query: 314 PYAPLIMGCDIAEEG--GDNTVVVLRR 338
P + DI G D T + + +
Sbjct: 251 PLMQIRAFWDIGGTGAKADATAIWIAQ 277
>gi|288916279|ref|ZP_06410658.1| Terminase [Frankia sp. EUN1f]
gi|288352258|gb|EFC86456.1| Terminase [Frankia sp. EUN1f]
Length = 546
Score = 43.4 bits (100), Expect = 0.083, Method: Composition-based stats.
Identities = 35/257 (13%), Positives = 69/257 (26%), Gaps = 35/257 (13%)
Query: 18 LMW--SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQL-EFMEVV-DAHCLNSVNNP 73
+W D FV KG WQ E + + +
Sbjct: 10 QLWHFDDARADRAQRFVERGL-VHTKGRHARRPFLLEPWQRDEIIRPMFGTVMYDPQLEQ 68
Query: 74 NPEVFKGA-ISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKW 131
++ A I GR GK+ L + L L+ + + + A + ++ +
Sbjct: 69 WVRQYRLAWIELGRKNGKSELLSALALYFLCADGEESAEVYGAACDRDQAALVYNVAKRM 128
Query: 132 LSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
+ L P E+ ++ ++ L D+ G+
Sbjct: 129 VELSPVLSKRLEVLDSKKRIIDPKTNSVYQVLAADAG------------------GNLGQ 170
Query: 191 YGMAIINDEASGTPD-VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK 249
AI+ DE P+ + + + R+ T+ + E
Sbjct: 171 NPHAIVFDEVLTQPNRELWDALRTGMGARSQPIMIAATTAGNTGNDFCLEEHE------- 223
Query: 250 RFQIDTRTVEGIDPSFH 266
+ + DP
Sbjct: 224 -YSLSVAESPDTDPHRL 239
>gi|270291373|ref|ZP_06197595.1| phage terminase, large subunit [Pediococcus acidilactici 7_4]
gi|270280219|gb|EFA26055.1| phage terminase, large subunit [Pediococcus acidilactici 7_4]
Length = 386
Score = 43.4 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 16/184 (8%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PGIS 109
WQ M ++ + + +S RG GKT L A + +
Sbjct: 101 WQKFIMAMLIGWRNDDGGK---RFSRAIVSVARGQGKTYLMAIITAYSFLIESLGLSNQD 157
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + + Q L + L+ + F+ + + S +
Sbjct: 158 YLVSSINYKQTSKIL-GYIKSMLAKIATIEPFKSLIADSGLDTRTLSSQSDQVVMSSNNN 216
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMT 227
++ + D+F + I DE I+ + G + RN I T
Sbjct: 217 KLRAISHEAGQYDSF------HFTTAIFDEIGEIKTRQKISKIVSGQVKVRNKQFIQIST 270
Query: 228 SNPR 231
+ P
Sbjct: 271 AYPD 274
>gi|228986818|ref|ZP_04146946.1| Terminase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228772900|gb|EEM21338.1| Terminase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 555
Score = 43.4 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 50/362 (13%), Positives = 91/362 (25%), Gaps = 37/362 (10%)
Query: 16 FDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNP 75
DL + DE+ NF GEK + + +Q + V +
Sbjct: 40 DDLYFDDEMIEDCINF-------GEKW-----YFPLQPFQKFLIAFVFLFYKKNGRVFYR 87
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTR---PGISVICLANSETQLKTTLWAEVSKWL 132
+ GRG GK L + ++ +L+S P ++ +ANSE Q KT+
Sbjct: 88 KFLWML---GRGGGKNGLISVIIHFLISELHGIPEYNISVVANSEEQAKTSPDEVHKCVK 144
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC-----------RTYSEERP 181
+ F+ S + + D+K
Sbjct: 145 RNEILQRAFKTTLTQTVSKATGSILKFRTSNGDTKDGLRDGAVVFDEIHQYESNKDVRVH 204
Query: 182 DTFVGHHNTYGMAIINDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
+ +G I + D + L +
Sbjct: 205 ISGLGKKKNPREFYIGTDGYVRDGFLDKQKEKAMKVLNGEARPNAIFPFICKLNDEKEVD 264
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD--VTRVEVCGQFPQQDIDSF 296
+ N + + + EG+ + E S+ + S
Sbjct: 265 DFDNWEMANPMLSHPLSEYAEGLLETIKEEYEDLEDDPSNREEFMTKRMNLPVTNLERSV 324
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV--VVLRRGPVIEHLFDWSKTDLR 354
+ I A NR I D A + + G I + + +
Sbjct: 325 AKWSEI-LATNRPFPDLYAQECIGALDFASIRDFAACGLLFRQNGEYIFKTHSFVRKEFV 383
Query: 355 TT 356
Sbjct: 384 DI 385
>gi|289619624|emb|CBI53907.1| unnamed protein product [Sordaria macrospora]
Length = 2051
Score = 43.4 bits (100), Expect = 0.087, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMST-RPGI 108
+E + A N +VF + + G GKT + L +W RPG
Sbjct: 1170 ALEEIYAQRFQYFNPMQTQVFHTLYHTPANVLLGSPTGSGKT-VACELAMWWAFRERPGS 1228
Query: 109 SVICLANSETQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L ++ + + + +
Sbjct: 1229 KVVYIAPMKALVRER----VKDWGARLAKPLGLKLVELTGDNTPDTRTIQDADIIITTPE 1284
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1285 KWDGISRSWQTRGYVR-------KVSLVIIDEIHLLAGDRGPILEIIVSRMN 1329
>gi|290474254|ref|YP_003467131.1| Gp48 [Xenorhabdus bovienii SS-2004]
gi|289173564|emb|CBJ80344.1| Gp48 [Xenorhabdus bovienii SS-2004]
Length = 489
Score = 43.4 bits (100), Expect = 0.088, Method: Composition-based stats.
Identities = 47/409 (11%), Positives = 87/409 (21%), Gaps = 60/409 (14%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ I R +G TT + L +A++ K +V LP++
Sbjct: 48 RNIILKARQLGFTTEVCIIQLDAALF-ESAKCALIAHTLNDAKRLFREKVKYAYDQLPDE 106
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
S + + +
Sbjct: 107 IKA---------------ANPASNDAAGELVFRKGGSLYVSTSFRGGTLRYLHVSE-FGK 150
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD-----------D 247
+ P + G + + F + S +G F++ D
Sbjct: 151 ICAKFPHKAREIVTGAFEAVSTDCFTTIESTAEGRAGYFFDYCQTAEKAQLQGKQLSNLD 210
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
WK F E R E+ G+ Q + A
Sbjct: 211 WKFFFFSWWKNPQYAIDPVEAWPQRLVD----YFAELSGKHGIQLNER---QKAWYLAKE 263
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR------------- 354
+ D A + ++ + K
Sbjct: 264 KTLGDDMKREYPSIPSEAFQQSVEGAYYAKQFRWLYENKRIGKLPDNSHLPVHTFWDIGV 323
Query: 355 --TTNNKISGLVEKYRPDAIIIDANNTGA-RTCDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
+T V + + + G L+ GY G + EF +
Sbjct: 324 GDSTAIWFVREVGEEFHVIDYYENSGEGLRHYMKVLKDKGYIYGDHWGPHDIDNREFGAD 383
Query: 412 RRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRV 460
++ + I+ K + V IES R
Sbjct: 384 AKSR-----RELAREGYEIDGQKYSMIFKVVPKVGVDTG----IESVRE 423
>gi|257468550|ref|ZP_05632644.1| putative phage terminase, large subunit [Fusobacterium ulcerans
ATCC 49185]
gi|317062808|ref|ZP_07927293.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
gi|313688484|gb|EFS25319.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
Length = 568
Score = 43.4 bits (100), Expect = 0.088, Method: Composition-based stats.
Identities = 34/322 (10%), Positives = 74/322 (22%), Gaps = 60/322 (18%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS-TRPGISV 110
R +Q + + + I GR GK+ L+ + S +
Sbjct: 70 RGFQDFIIGSLHGWRRKRTKE--RRFREAYIQVGRRNGKSFLSGEQATFFSSYLGMKDRI 127
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
C A + Q +W ++ ++ + L
Sbjct: 128 FCAATKQEQA-NIVWDDI----RNFIESDVDLIELYKVKEHDRTIKSLITD--------- 173
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSN 229
+ G + I DE P + + +L + + +T+
Sbjct: 174 -TVIKSLGRDTKSMDGF---GNILAICDELHAHPNNQMYKLLLDGQADVDNALTLAITTA 229
Query: 230 PRRLSGKFYEIF-------NKPLDDWKRFQIDTRTVEGIDPSFHEGI------------- 269
L+ YE + +D F + D +
Sbjct: 230 GFNLNSFCYEHYQFCEKILEGLVDKESLFIFICEMDKDDDIWEPKNWLKANPYFLFNEDG 289
Query: 270 -----------------IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA-LNREPC 311
+ G D + + +I L +
Sbjct: 290 TINEKKLARYAEKAIDAKEKGGEDLTNFLTKQLNMWVTAKGGQYIDLAKFKSCESELTLK 349
Query: 312 PDPYAPLIMGCDIAEEGGDNTV 333
+G D+++ G ++
Sbjct: 350 DMKGRKAYLGFDLSKGGDLTSI 371
>gi|225574768|ref|ZP_03783378.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM
10507]
gi|225037968|gb|EEG48214.1| hypothetical protein RUMHYD_02845 [Blautia hydrogenotrophica DSM
10507]
Length = 428
Score = 43.4 bits (100), Expect = 0.088, Method: Composition-based stats.
Identities = 39/263 (14%), Positives = 79/263 (30%), Gaps = 14/263 (5%)
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
+ + G GK+ A L + G ++IC+ S+ + + +AE++
Sbjct: 12 REVDRSQKRYIVMKGSAGSGKSVDTAQNYLLRLMQDKGRNLICIRKSDITNRDSTYAELT 71
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
F Q L + + + E+ +
Sbjct: 72 GAAYR-----IFGDQVDRYWNIKQSPLSLTFRPNGNQIIFRGVNDEKQREKLKSITFQRG 126
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTE---RNANRFWIMTSNPRRLSGKFYEIFNK-PL 245
I +EA+ I L + MT NP + ++F P
Sbjct: 127 KLTDVWI-EEATEITQADFEIIDDRLRGELPPDQFYQIRMTFNPVNKNHWIKKVFFDTPD 185
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
+ ID ++H + R +D + ++ G + ++ I N E
Sbjct: 186 SNVLTHHSTYLDNRFIDAAYHARMARRKEVDPEGYQIYGLGNW--GEVGGLILHNWAVEN 243
Query: 306 LNREPCPDPYAPLIMGCDIAEEG 328
+++ D Y + +G D
Sbjct: 244 ISQN--LDDYDDIAIGQDFGFNH 264
>gi|225683146|gb|EEH21430.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb03]
Length = 2011
Score = 43.4 bits (100), Expect = 0.089, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMST-RPGI 108
+E + N ++F + + G GKT + A L +W RPG
Sbjct: 1129 ILEEIYGQRFQFFNPMQTQIFHTLYHTPTNVLLGSPTGSGKT-VAAELAMWWAFRERPGS 1187
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1188 KVVYIAPMKALVRER----VHDWKRRLTVPMGLKLVELTGDNTPDTKTIRDSDIIITTPE 1243
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1244 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGSNRGPILEIIVSRMN 1288
>gi|282857748|ref|ZP_06266957.1| DNA maturase B [Pyramidobacter piscolens W5455]
gi|282584418|gb|EFB89777.1| DNA maturase B [Pyramidobacter piscolens W5455]
Length = 591
Score = 43.4 bits (100), Expect = 0.090, Method: Composition-based stats.
Identities = 31/238 (13%), Positives = 65/238 (27%), Gaps = 22/238 (9%)
Query: 36 FPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA 95
+PW W+ + + N + I A RG+GK+ + +
Sbjct: 5 YPWQNSKLKDFRAFLYVVWKHLNLPEPTPLQYDIANYLQTGPKRKIIEAFRGVGKSWITS 64
Query: 96 WLVLWLMSTRPGISVICLANSETQL---KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP 152
LW + P ++++ ++ S+ + T + + L P K F +
Sbjct: 65 AYALWRLYWNPQLNILVVSASKERADSFSTFTLRLIDEMGILSPLKPDFNKGQRNSKI-A 123
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
+ S K + + II D+ + + +
Sbjct: 124 FDVGPARASHAPSVKSVGIYGQLT------------GSRADVIIADDIEISNNSYTQMMR 171
Query: 213 GFLTERNANRFWIMTSNPR------RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPS 264
L+E I+ ++N D +I V +
Sbjct: 172 DKLSEAVKEFDAILKPADDAEITYLGTPQVEMSLYNALRDRGYSTRIWPARVPSAEKR 229
>gi|21244868|ref|NP_644450.1| DNA-dependent helicase II [Xanthomonas axonopodis pv. citri str.
306]
gi|21110576|gb|AAM38986.1| DNA helicase II [Xanthomonas axonopodis pv. citri str. 306]
Length = 730
Score = 43.4 bits (100), Expect = 0.091, Method: Composition-based stats.
Identities = 49/378 (12%), Positives = 101/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 16 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 61
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 62 VTFT---NKAAGEM---------RHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 109
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + S P + + I
Sbjct: 110 PEGFQVMDSDDQLRLVKRVVQALELDESKYPPKQMSWWINEQKDEGRRPQHIQPEPNDDW 169
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ + +D + D+ +F + +
Sbjct: 170 TEVRRQVYAAYQER-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 222
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 223 DEFQDTNAIQYAFVRVLAGESGNVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 273
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 274 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGNGDPIDLYAAYNEV 330
Query: 414 TEL---HVKMADWLEFAS 428
E + W+
Sbjct: 331 DEARYVVERARQWVRDGG 348
>gi|284007375|emb|CBA72767.1| phage terminase large subunit [Arsenophonus nasoniae]
Length = 141
Score = 43.4 bits (100), Expect = 0.092, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 24/105 (22%), Gaps = 4/105 (3%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
F F P WQ + + S +
Sbjct: 41 DTPTVARFIAFSSLCPHVKGHLRGKPIQLEP--WQQFAIANILGFKEVSTGR--RKYRSA 96
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
I R K+TL A L W + G I A ++
Sbjct: 97 YIQVPRKNAKSTLAAILANWFLLMENGQQDIYTAAVSRDQARIVF 141
>gi|18071222|ref|NP_542306.1| hypothetical protein PBC5p46 [Sinorhizobium phage PBC5]
gi|17940328|gb|AAL49572.1|AF448724_9 unknown [Sinorhizobium phage PBC5]
Length = 514
Score = 43.4 bits (100), Expect = 0.092, Method: Composition-based stats.
Identities = 29/317 (9%), Positives = 68/317 (21%), Gaps = 57/317 (17%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P Q + + + + + R G +TL ++L
Sbjct: 42 PNEPQRKLLRRMWH--------------RNIVPKARQRGFSTLIQIIILDACLFNENQRA 87
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ--SLSLHPAPWYSDVLHCSLGIDSKH 168
+A + ++ LP ++ + ++ + +
Sbjct: 88 AIIAQDRVTASKIMRNKIEFAYDRLPPWLRQKVPIVTDNVEEKIFANGSSIQVSTSARGD 147
Query: 169 -----------YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE 217
E+ T GM I A G ++ L
Sbjct: 148 TLNWLHISEFGIICFESPTKAEKIVTGSLAAAAQGMIFIESTAKGRDGAYYNMVMEALAL 207
Query: 218 RNANRFW-------------------------IMTSNPRRLSGKFYEIFNKPLDDWKRFQ 252
A + I+ + + +P+ + KR
Sbjct: 208 AEAGKRLNRLQYRLHFASWWDADEYAMDPHGVIIEPKDHKYFDELEREIGRPISEAKRAW 267
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP 312
+ + + +V V G + + +
Sbjct: 268 YVSTRRSDFADEDEKMWQEYPSTVREAFKVSVEGVILAKQMSIARS-----QNRITRVPY 322
Query: 313 DPYAPLIMGCDIAEEGG 329
P P+ D+ +
Sbjct: 323 RPELPVNTFWDLGVDDD 339
>gi|37528453|ref|NP_931798.1| DNA-dependent helicase II [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787891|emb|CAE17008.1| DNA helicase II [Photorhabdus luminescens subsp. laumondii TTO1]
Length = 720
Score = 43.4 bits (100), Expect = 0.098, Method: Composition-based stats.
Identities = 48/377 (12%), Positives = 99/377 (26%), Gaps = 43/377 (11%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+E ++ +V P + + AG G GKT + + WL+S +A +
Sbjct: 6 LLESLNDKQREAVAAPRTNML---VLAGAGSGKTRVLVHRIAWLLSVEKASPFSVMAVTF 62
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
T AE+ + L M W + + H+
Sbjct: 63 T---NKAAAEMRHRIENLIGTSQGGM---------WIGTFHGLAHRLLRAHHLDANLPQD 110
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ D+ + + +A D G + +
Sbjct: 111 FQILDSEDQNRLLKRII----KAMNLDDKQWPARQGMWYINGKKDEGLRPQHIESYGNPV 166
Query: 238 YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
+ ++ +Q +D + L+ G+F +D F
Sbjct: 167 EATW---QKIYQAYQEACDRAGLVDFAELLLRAHELWLNKPQILQHYRGRFTNILVDEFQ 223
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD----WSKTDL 353
N I+ A + +I+G D+ + RG +E++ + +
Sbjct: 224 DTNSIQYAWIHLLAGETGKVMIVG-------DDDQSIYGWRGAQVENIQRFLKDFPGAET 276
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ--KRAVDLEFCRN 411
+ +I N+ L G + +D
Sbjct: 277 IRLEQNYRSTSNILKVANTLIANNSDRLG--KNLWTDGVEGEPISLYCAFNELDEARYV- 333
Query: 412 RRTELHVKMADWLEFAS 428
++ +WLE
Sbjct: 334 -----VSRIKNWLENGG 345
>gi|305662656|ref|YP_003858944.1| DNA topoisomerase (ATP-hydrolyzing) [Ignisphaera aggregans DSM
17230]
gi|304377225|gb|ADM27064.1| DNA topoisomerase (ATP-hydrolyzing) [Ignisphaera aggregans DSM
17230]
Length = 1228
Score = 43.4 bits (100), Expect = 0.099, Method: Composition-based stats.
Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 13/162 (8%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNP----------EVFKGAISAGRGIGKTTLNAWLVLWL 101
W E + ++ + + +P A+ A GIGK+TL L+
Sbjct: 43 DVWFKEIRDFIEFFRMATGFSPWSLQTYWIKRLLSGESFAMVAPTGIGKSTLLGVYALYR 102
Query: 102 MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
+ + + K ++++S++L +K++ L + S
Sbjct: 103 AYFYR-SKIYIITPTREIAKQ-FYSKISEYLRT-ISKNFHGADKLRIIFYDSSSKNHKDI 159
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L + +++ + T S V ++ +I D+
Sbjct: 160 LKLINENMFDILITSSSFLSRHHVIVDSSKIDIVIADDLDSI 201
>gi|302385167|ref|YP_003820989.1| Terminase [Clostridium saccharolyticum WM1]
gi|302195795|gb|ADL03366.1| Terminase [Clostridium saccharolyticum WM1]
Length = 560
Score = 43.4 bits (100), Expect = 0.099, Method: Composition-based stats.
Identities = 47/359 (13%), Positives = 87/359 (24%), Gaps = 42/359 (11%)
Query: 13 QKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNN 72
+ D+ +D+ + + +F F WQ + + D + N
Sbjct: 38 FETEDIYTNDDQLERYISLARYF-----------PFEQVFPWQKFVIGLHDCTYW--IEN 84
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---VICLANSETQLKTTLWAEVS 129
P GRG GK AW + LMS GI V AN+E Q + ++
Sbjct: 85 DMPRWPDLFCELGRGAGKDGTIAWESVCLMSPYNGIREYDVDICANNEDQAMRPVRDVIA 144
Query: 130 KWLS---LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR------------ 174
+ + K +F + S + + K
Sbjct: 145 AFERPEVMGKLKRFFYWTKEQVRSLKTNSFMKGRTNSPKGKDGLRSGICIFNEIHQYEDY 204
Query: 175 -TYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPRR 232
+ H N + P D + G L + +
Sbjct: 205 ANINVFTTGLGKKKHPRRSYYTTNGDVREGPLDDLIETSEGILRGGEPDNGLLPFICK-- 262
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIA--RYGLDSDVTRVEVCGQFPQ 290
+ ++W + + + + +
Sbjct: 263 ---LDKKEDVDQEENWPMANPSLPYLPNLMEEIRKEYREWKKNPARLPAFMTKRMNIPDG 319
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV-VVLRRGPVIEHLFDW 348
+ I A NRE G D ++ V + R G + +
Sbjct: 320 TSEIKVTEWDNI-IATNRELPDLIGWSCTCGIDYSKLTDFAAVNLHFRDGDKRYDINHY 377
>gi|73748202|ref|YP_307441.1| hypothetical protein cbdb_A296 [Dehalococcoides sp. CBDB1]
gi|73659918|emb|CAI82525.1| hypothetical protein cbdbA296 [Dehalococcoides sp. CBDB1]
Length = 405
Score = 43.4 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 38/318 (11%), Positives = 82/318 (25%), Gaps = 42/318 (13%)
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE---ERPDTFVG 186
K L ++ + ++ + Y +
Sbjct: 43 KNLVKCAPTFKPQLNISMMRLKDRLNEAGFTDIYHTEGGYIIRLNQARAVFLSAEPSASV 102
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
NT + + DEA + + + S
Sbjct: 103 VGNTAHLLLEVDEAQDVNKEKYSKEFKPMGATTNVTTVLYGTTWDSFSLLEEIKEQNIEK 162
Query: 247 DWK-----RFQIDTRTVEGIDPSFHEGI---IARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ K F+ D V +P++ R G + + + F
Sbjct: 163 EQKDGLKRHFRYDWEAVAAHNPTYLAYALSEKERLGKNHPLFLAQYRLLPVSGGGGMFSN 222
Query: 299 --LNIIEEALNREPCPDPYAPLIMGCDIAEEGG--------------DNTVVVLRRGP-- 340
L++++ + P+ + G D+A E D++V+ + +
Sbjct: 223 EQLDLLKGNHPCQVYPEKGKVYVAGLDLAGEDSQTGGISPTTVNLRRDSSVLTIAQLDYT 282
Query: 341 -----------VIEHLFDWSKTDLRTTNNKISGLVEK-YRPDAIIIDANNTGARTCDYLE 388
+ + W T K+ L+ K ++ + +DA G +L
Sbjct: 283 FAKAPYNLPQVRLVCHYSWQGTRHALLYEKLVELLGKVWKCRKVAVDATGLGQPVASFLR 342
Query: 389 M-LGYHVYRVLGQKRAVD 405
LG + V Q +
Sbjct: 343 ESLGSRILPVPFQPARAE 360
>gi|111184763|gb|ABH08471.1| putative terminase ATPase subunit [Human herpesvirus 3]
gi|157965750|gb|ABW06896.1| DNA packaging protein [Human herpesvirus 3]
Length = 743
Score = 43.4 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 44/163 (26%), Gaps = 16/163 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GKT L+ +M+T GI V A ++ S L
Sbjct: 264 PRRHGKTWFLVPLIALVMATFRGIKVGYTA----HIRKATEPVFEGIKSRLEQWFGANYV 319
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ + Y T G + DEA+
Sbjct: 320 D--------HVKGESITFSFTDGSY----STAVFASSHNTNGIRGQDFNLLFVDEANFIR 367
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
I+GFL + N ++ ++N + S F D
Sbjct: 368 PDAVQTIVGFLNQTNCKIIFVSSTNTGKASTSFLYNLRGSSDQ 410
>gi|83721852|emb|CAI44887.1| putative terminase ATPase subunit [Human herpesvirus 3]
gi|94481989|gb|ABF21689.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482063|gb|ABF21762.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482137|gb|ABF21835.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|116489977|gb|ABJ98890.1| ORF45/42 [Human herpesvirus 3]
Length = 747
Score = 43.4 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 44/163 (26%), Gaps = 16/163 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GKT L+ +M+T GI V A ++ S L
Sbjct: 268 PRRHGKTWFLVPLIALVMATFRGIKVGYTA----HIRKATEPVFEGIKSRLEQWFGANYV 323
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ + Y T G + DEA+
Sbjct: 324 D--------HVKGESITFSFTDGSY----STAVFASSHNTNGIRGQDFNLLFVDEANFIR 371
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
I+GFL + N ++ ++N + S F D
Sbjct: 372 PDAVQTIVGFLNQTNCKIIFVSSTNTGKASTSFLYNLRGSSDQ 414
>gi|9625919|ref|NP_040165.1| DNA packaging terminase subunit 1 [Human herpesvirus 3]
gi|139650|sp|P09294|TRM3_VZVD RecName: Full=Tripartite terminase subunit UL15 homolog; AltName:
Full=DNA-packaging protein 45; AltName: Full=Terminase
large subunit; Contains: RecName: Full=Gene 42 protein
gi|5869808|emb|CAB55553.1| putative ATPase subunit of terminase [Human herpesvirus 3 strain
Dumas]
gi|46981453|gb|AAT07724.1| DNA packaging protein [Human herpesvirus 3]
gi|46981524|gb|AAT07800.1| DNA packaging protein [Human herpesvirus 3]
gi|94481841|gb|ABF21543.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94481915|gb|ABF21616.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482211|gb|ABF21908.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482285|gb|ABF21981.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482359|gb|ABF22054.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482433|gb|ABF22127.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482507|gb|ABF22200.1| putative ATPase subunit of terminase [Human herpesvirus 3]
gi|94482581|gb|ABF22273.1| putative ATPase subunit of terminase [Human herpesvirus 3]
Length = 747
Score = 43.4 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 44/163 (26%), Gaps = 16/163 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GKT L+ +M+T GI V A ++ S L
Sbjct: 268 PRRHGKTWFLVPLIALVMATFRGIKVGYTA----HIRKATEPVFEGIKSRLEQWFGANYV 323
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ + Y T G + DEA+
Sbjct: 324 D--------HVKGESITFSFTDGSY----STAVFASSHNTNGIRGQDFNLLFVDEANFIR 371
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
I+GFL + N ++ ++N + S F D
Sbjct: 372 PDAVQTIVGFLNQTNCKIIFVSSTNTGKASTSFLYNLRGSSDQ 414
>gi|56420639|ref|YP_147957.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426]
gi|56380481|dbj|BAD76389.1| DNA/RNA helicase [Geobacillus kaustophilus HTA426]
Length = 815
Score = 43.0 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 48/338 (14%), Positives = 94/338 (27%), Gaps = 51/338 (15%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
PR Q+E +E ++A + + G+GKT L A+ R V
Sbjct: 224 PRFAQVEALERLEAAYEEGYDKAM-------VVMATGLGKTYLAAFFA------RRFSRV 270
Query: 111 ICLANSE---TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ +A+ E Q K + + + L + + E + + + + +
Sbjct: 271 LFIAHREEILRQAKQSFERVIPDRTAGLYDGNQKEGNADMVFASIFTLSMKKHLH----- 325
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
II DE L +T
Sbjct: 326 ------------------SFRPDAFDLIIVDEFHH---AAARSYERVLCYFQPKFLLGIT 364
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ P R K ++ I+ + P + G+ D+D ++++ G
Sbjct: 365 ATPDRSDNKDVYALCDGNVAYRIDFIEAVQRGWLAPFHYYGVY----DDTDYSQIKWLGN 420
Query: 288 FPQQDI--DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL 345
++ + + E+ L L+ I + + R G L
Sbjct: 421 RYDEEELLQVQLREEMAEKILRAWKRYKKTRTLVFCSSI-RQADFLSEYFQRHGCRTISL 479
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
K + I+ L + +D N G
Sbjct: 480 HS--KQTAISRKQAIAMLERRELDAIFTVDLFNEGVDI 515
>gi|124009888|ref|ZP_01694555.1| hypothetical protein M23134_06477 [Microscilla marina ATCC 23134]
gi|123984124|gb|EAY24490.1| hypothetical protein M23134_06477 [Microscilla marina ATCC 23134]
Length = 539
Score = 43.0 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 45/272 (16%), Positives = 78/272 (28%), Gaps = 22/272 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
AG+G GKT + L++ PG+ AN++ QL + V L + + E
Sbjct: 36 AGQGAGKTHGAGLISFRLITNFPGVFGFMGANTDMQLTDSTLYRVFLVWKDLGLEEYDEY 95
Query: 144 QSLSLH-----PAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ P +S H +K + + H I D
Sbjct: 96 LGQGDYVVGTQPPRHFSREGHAFKSYRNKISFWNGCVVFIGSLENYKAHDGKEFAWAILD 155
Query: 199 EASGTPDV-INLGILGFLTERN---ANRFWIMTSNPRRLSGKFYEI--FNKPLDDWKRFQ 252
E T + + ILG L ++ + +TS FN +
Sbjct: 156 ETKDTREEAVQEVILGRLRQQGLYISEATQALTSEEYDEGSPVVANLPFNPLYIFTSPAK 215
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ-----------FPQQDIDSFIPLNI 301
+ + E I A+ + +V G + ++I
Sbjct: 216 VPWINDWFELSEYEEEIKAKIYNPPQYFKKKVGGDSKFVVISATHLNLKNLPSNYIEKQE 275
Query: 302 IEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
A +R PL + D +V
Sbjct: 276 ANLASHRHGMLIYGDPLAKSGGEFWKQWDASV 307
>gi|312162838|ref|YP_003933823.1| DNA packaging terminase subunit 1 [Saimiriine herpesvirus 1]
gi|308096471|gb|ADO13811.1| DNA packaging terminase subunit 1 [Saimiriine herpesvirus 1]
Length = 745
Score = 43.0 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 30/190 (15%), Positives = 53/190 (27%), Gaps = 17/190 (8%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
F+ +V L S + + R GKT LV +++ GI + A+
Sbjct: 239 FLRLVFETPLFSDAAVRHFRQRATVFLVPRRHGKTWFLVPLVALSLASFRGIKIGYTAH- 297
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ ++ E+ L E + T
Sbjct: 298 IRKAIEPVFDEIDACLRSWFGAARVEHVKGETISFSFPDGSR---------------STI 342
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
G + DEA+ I+GFL + N ++ ++N + S
Sbjct: 343 VFASSHNTNGIRGQDFNLLFVDEANFIRPEAVQTIMGFLNQANCKIIFVSSTNTGKASTS 402
Query: 237 FYEIFNKPLD 246
F D
Sbjct: 403 FLYNLRGSAD 412
>gi|255683197|ref|YP_003084405.1| UL15 [Duck enteritis virus]
gi|254840012|gb|ACT83557.1| UL15 [Anatid herpesvirus 1]
Length = 739
Score = 43.0 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 25/203 (12%), Positives = 54/203 (26%), Gaps = 18/203 (8%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
F+ +V L S + + + R GKT L+ ++ GI + A+
Sbjct: 233 FLRIVFDIPLFSETSLRHFRQRATVFLVPRRHGKTWFIVPLIALALTKFRGIKIGYTAH- 291
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ ++ E+ + E + T
Sbjct: 292 IRKATEPVFDEIDARIRRWFGNGRVEHIKGETISFSFQDGSK---------------STV 336
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSG 235
+ + DEA+ I+GFL + N ++ ++N + +
Sbjct: 337 TFASSHNTNSLRGQDFNLLFVDEANFIRSDAVQTIVGFLNQTNCKIIFVSSTNTGKSSTS 396
Query: 236 KFYEIFNKPLDDWKRFQIDTRTV 258
Y + +
Sbjct: 397 FLYNLKGATDELLNVVTYICDDH 419
>gi|90962732|ref|YP_536647.1| Type III restriction-modification system restriction subunit
[Lactobacillus salivarius UCC118]
gi|90821926|gb|ABE00564.1| Type III restriction-modification system restriction subunit
[Lactobacillus salivarius UCC118]
gi|300215361|gb|ADJ79774.1| Type III restriction-modification system restriction subunit
[Lactobacillus salivarius CECT 5713]
Length = 875
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 71/242 (29%), Gaps = 25/242 (10%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVV 62
+ + +K+ D + I+ + + E R +Q E + +
Sbjct: 6 QVVQKELPLLKKIEDFRQASLIEDDPAYYFK-----IEDYIKDNLKHNLRPYQAEALYAL 60
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL-- 120
+ N +F A G GKT A +L+L +T + I +AN+ +
Sbjct: 61 -NYTQTREEPHNQVLFNMAT----GSGKTDTMAGAILYLYNTHKYRNFIFVANTNAVVSK 115
Query: 121 -KTTLWAE--VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
K E ++ S+ P Y + L + +
Sbjct: 116 TKENFLNENSPKYLFKSPITIDGRRIEIRSVDRFPSYQEPDIIYLKLTTIQSLANELGSI 175
Query: 178 EERPDTFVGHHNTYGMAIINDEAS---------GTPDVINLGILGFLTERNANRFWIMTS 228
E T+ M I+ DEA + +L + N++ + +
Sbjct: 176 RENGLTYEEL-EKNKMVILADEAHHFNASTKSQKVEEKSWEILLDKIRNINSDNRQLEFT 234
Query: 229 NP 230
Sbjct: 235 AT 236
>gi|67480341|ref|XP_655520.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56472666|gb|EAL50132.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
Length = 1804
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 11/137 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT +L + P V+ +A + +K L S W L
Sbjct: 1024 VIVGAPTGSGKTVAAELCMLKIFRDTPDKKVVYIAPMKALVKEKL----SDWKDKLKTLG 1079
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
++ + + + + + R ++++ VG II DE
Sbjct: 1080 KNIVELTGDFTPDSAAIAKADIILTTPEKWDGITRLWTKKSYVQKVG-------LIILDE 1132
Query: 200 ASGTPDVINLGILGFLT 216
+ I +T
Sbjct: 1133 VHLLGEERGPVIEAIVT 1149
>gi|290891543|ref|ZP_06554600.1| hypothetical protein AWRIB429_1990 [Oenococcus oeni AWRIB429]
gi|290478796|gb|EFD87463.1| hypothetical protein AWRIB429_1990 [Oenococcus oeni AWRIB429]
Length = 636
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 49/366 (13%), Positives = 103/366 (28%), Gaps = 51/366 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + ++ + IS GRG GKT + A L+ + S +
Sbjct: 99 MEWQKFMLSLLIGWRNKEGGK---RFSRAIISVGRGQGKTYMLAILMAY--SFFVESRGL 153
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+N + + + + K L + +++P +D SL D
Sbjct: 154 --SNQDFLVSSINAKQTGKLYGYLKS---MINVLRTINPWKNIADKTDLSLQADKIIMRN 208
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSN 229
+ + + I DE + I+ + G + N I T+
Sbjct: 209 HNNVIRPISHEAGQYD-SYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQISTAY 267
Query: 230 PR-------RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF-HEGIIARYG------- 274
P + L D + + + +D ++ E +
Sbjct: 268 PDPTVPFHEDEKMLQQAMEQDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPLLDLASE 327
Query: 275 -----------LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
D+DV + + + DIDS++ L +E+A+ E
Sbjct: 328 HDNLMQGLLDKRDNDVLTGAVHDFQCKNLNMWLSSDIDSYLNLADVEKAIVPEFNIY-GQ 386
Query: 317 PLIMGCDIAEEGGDNTVVVLR----RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
+G D + + V + + + I ++ +
Sbjct: 387 RCYVGVDYSMSSDNTAVAFVYPYVSEEGQAKWHVEQHSFIPFQAAGSIEAKEKQDGINYR 446
Query: 373 IIDANN 378
++
Sbjct: 447 ELETKG 452
>gi|322507236|gb|ADX02690.1| Putative phage terminase [Acinetobacter baumannii 1656-2]
Length = 378
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 43/319 (13%), Positives = 87/319 (27%), Gaps = 38/319 (11%)
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A + Q++ + + + W ++ D+ + Y T
Sbjct: 3 YFAPTYPQIRDIFFPTIEEV-----AFDWG--LKTKVYETNKEVDI------YYGRQYRT 49
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNA----NRFWIM 226
S E+P T VG + + D + I+ + + A
Sbjct: 50 TIICRSMEKPATIVGFKIGHALIDELDVMAKVKAQQAWRKIIARMRYKQAGLLNGIDVAT 109
Query: 227 TSNPRRLSGKFY----EIFNKPLDDWKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTR 281
T + + + + + Q T E + + + Y +
Sbjct: 110 TPEGFKFTYEQFVKEANKSEAKRKLYGMIQASTYDNEANLPDDYISSLYESY--PPQLIS 167
Query: 282 VEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPV 341
+ GQF + P + + + PL++G D V V+R G
Sbjct: 168 AYLRGQFVNLTSGAVYP-DFDRVLNHTDEEIKKGEPLLIGMDFNVLKMAAVVYVIREG-- 224
Query: 342 IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDY---------LEMLGY 392
+ +R T + E++ I + + +G T L+ G+
Sbjct: 225 -KPRALDELVGVRDTPTMCQLINERFPDHDITVIPDASGQATSSKNFSESDHAILKKNGF 283
Query: 393 HVYRVLGQKRAVDLEFCRN 411
V D N
Sbjct: 284 KVEVNGVNPGIKDRITAVN 302
>gi|260588227|ref|ZP_05854140.1| putative prophage, terminase, ATPase subunit [Blautia hansenii DSM
20583]
gi|260541365|gb|EEX21934.1| putative prophage, terminase, ATPase subunit [Blautia hansenii DSM
20583]
Length = 620
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 37/313 (11%), Positives = 78/313 (24%), Gaps = 45/313 (14%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
RG GK+T+ A + + + Q + + ++
Sbjct: 81 SRGAGKSTMLALYFMTKGLLFNNYWAYICSGNADQAQE-TFRKIEDIAKKNIESMTGLTD 139
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
++ Y ++ + G A+ DE S
Sbjct: 140 VFVNELVKNQANTDGFVRSPMGFTYKLYNGSFVKTLNSNIDGKRGKRANAVCFDEGSWLS 199
Query: 205 DVINLGILGFLTERNANR-----------------FWIMTSNPRRLSGKFYEIFNKPL-- 245
+ I I G T N + S+ + FY +
Sbjct: 200 EEIFNVI-GAFTAVNKEFKLGGDIDVNAIPREIPNQLLYASSASSVDTAFYNKYRDFSKK 258
Query: 246 -----DDWKRFQIDTRTVEGIDPSFH---------EGIIARYGLDSDVTRVEVCGQFPQQ 291
D + I+ V E + + + E +F +
Sbjct: 259 MLLGDDRYFVADINCDIVIHATQKGIPLNKSLLSQETVDNEMRNNPEKALREYYNRFTKD 318
Query: 292 DI-DSFIPLNIIEEALNREPCP----DPYAPLIMGCDIAEEGGDNTVVV-----LRRGPV 341
+ I ++I + ++ D A ++TV++ G
Sbjct: 319 GGVNQIIKRSLIVRNSEKYVPVMYNDTGKRKFVLCYDPARNIDNSTVLISEILDADEGYK 378
Query: 342 IEHLFDWSKTDLR 354
++ + + TDL
Sbjct: 379 LKIVNSVNFTDLN 391
>gi|145603324|ref|XP_369340.2| hypothetical protein MGG_06124 [Magnaporthe oryzae 70-15]
gi|145011578|gb|EDJ96234.1| hypothetical protein MGG_06124 [Magnaporthe oryzae 70-15]
Length = 1998
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 45/147 (30%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W RPG V+ +A + ++ V W +
Sbjct: 1167 HTPANVLLGSPTGSGKT-VAAELAMWWAFRERPGSKVVYIAPMKALVRER----VKDWGA 1221
Query: 134 LLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L + ++ + + + + + + R++
Sbjct: 1222 RLAQPMGLKLVELTGDNTPDTRTIKDADVIITTPEKWDGISRSWQTRGYVR-------QV 1274
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1275 SLVIIDEIHLLAGDRGPILEIIVSRMN 1301
>gi|322707444|gb|EFY99022.1| activating signal cointegrator 1 complex subunit 3 [Metarhizium
anisopliae ARSEF 23]
Length = 1969
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W RP V+ +A + ++ V W
Sbjct: 1150 HTPANVLLGSPTGSGKT-VAAELAMWWAFRERPKSKVVYIAPMKALVRER----VKDWGK 1204
Query: 134 LLPNKHWFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L ++ + + + + + + R++
Sbjct: 1205 RLAQPLGLKIVELTGDNTPDTRTIKDADIIITTPEKWDGISRSWQTRGYVR-------QV 1257
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1258 SLVIIDEIHLLAGDRGPILEIIVSRMN 1284
>gi|317487266|ref|ZP_07946061.1| hypothetical protein HMPREF0179_03424 [Bilophila wadsworthia 3_1_6]
gi|316921456|gb|EFV42747.1| hypothetical protein HMPREF0179_03424 [Bilophila wadsworthia 3_1_6]
Length = 601
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 22/194 (11%), Positives = 49/194 (25%), Gaps = 16/194 (8%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ I A RG+GK+ + A V+W + P + + L+ S+ + +
Sbjct: 36 QHGPRRKIIEAFRGVGKSWITAAYVVWRLRQNPNLKFMVLSASKDRADNFTTFCLRLINE 95
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+ + + + +
Sbjct: 96 IPILQCLIPRADQRCSKLSFDVGPARADHAPSVTSKGIFSQITGGRADE----------- 144
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR----RLSGKFYEIFNKPLDDWK 249
II+D+ + + L+E I+ ++N+ D
Sbjct: 145 -IISDDVEVPNNSFTQAMRDKLSEAVKEFDAILKPGGTITYLGTPQTEQSLYNQLPDRGY 203
Query: 250 RFQIDTRTVEGIDP 263
+I D
Sbjct: 204 AIRIWPARYPSEDQ 217
>gi|206603136|gb|EDZ39616.1| Protein of unknown function [Leptospirillum sp. Group II '5-way
CG']
Length = 292
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 25/192 (13%), Positives = 61/192 (31%), Gaps = 11/192 (5%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRG-IGKTTLNAWLVLWLMSTRPGISVICL 113
Q E + L +V + ++++G+G +GKT + A L T ++
Sbjct: 4 QAEGLRN-RESLLAAVEKKSSPPRIISVTSGKGGVGKTNVTANLAYAFSETFGKKVLVLD 62
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A+ L+ +W F+ +SLS + + + + +
Sbjct: 63 ADMGLGNMDVLFNLRPRWTLR---DFLFDNRSLSDVLVEGPAGIRILPAASGVEEMTALS 119
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ + F + + +I+ +G + + + ++T P
Sbjct: 120 PEQNLKLISAFDQLEADFDILLIDT-GAGISENVL-----TFNLASQETLIVVTPEPTSR 173
Query: 234 SGKFYEIFNKPL 245
+ F +
Sbjct: 174 TDAFALMKVLNR 185
>gi|77462906|ref|YP_352410.1| putative terminase large subunit / phage terminase [Rhodobacter
sphaeroides 2.4.1]
gi|77387324|gb|ABA78509.1| putative terminase large subunit / phage terminase [Rhodobacter
sphaeroides 2.4.1]
Length = 510
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 53/380 (13%), Positives = 96/380 (25%), Gaps = 60/380 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGIS 109
WQ + + + V + RG KT+L A L L P
Sbjct: 23 PWQERIVRAIYGPRHPDGSR---IVKTVFLLVPRGNRKTSLAAALALLHTLGPERVPAGQ 79
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
VI A Q + E + + + + ++ A + +
Sbjct: 80 VIFAACDREQA-GIGFREAANIIRA----DKRLVAATRIYDAHNSAKKIVFRAED----- 129
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTS 228
T S D H + DE + + + + I T+
Sbjct: 130 ----VTLSAISSDGG-AQHGRTPAFTLIDELHAWKGRDLWEALKSGTAKVADSLTVIATT 184
Query: 229 NPRRLSGKFYEIF----------------------NKPLDDWKRFQIDTRTVEGIDPSF- 265
R E + +P DDW + G+ F
Sbjct: 185 AGRGADTVAAEQYAYALAVARGEIVNPAFLPILFAPEPGDDWTDEATWHKVNPGLRHGFP 244
Query: 266 -------HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD-PYAP 317
D+ R ++ D + + E + P
Sbjct: 245 SLEGLRTLAKEAEGRPSDAYAFRQFNLNEWMANSRDPLFDFDTYDARRFAEDLDELEGLP 304
Query: 318 LIMGCDIAEEGGDNTVVVLR---RGPVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAII 373
+G D++ G + VV G + + W D G+ E++R + +
Sbjct: 305 CWIGVDLSISGDLSAVVAAWKHPDGQISVKPWFWVPGDDLKVRADRDGVPYERWRDEGHL 364
Query: 374 IDANN---TGARTCDYLEML 390
I + D + L
Sbjct: 365 IATPGAIIDQSAVADQIREL 384
>gi|256826731|ref|YP_003150690.1| phage terminase, large subunit, PBSX family [Cryptobacterium curtum
DSM 15641]
gi|256582874|gb|ACU94008.1| phage terminase, large subunit, PBSX family [Cryptobacterium curtum
DSM 15641]
Length = 426
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 36/301 (11%), Positives = 76/301 (25%), Gaps = 27/301 (8%)
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
GRG K++ + +++ L++T P ++ + L+ T++ + + L F
Sbjct: 32 GGRGSTKSSFISLVIVLLVATFPWVNAVVFRRQANTLRDTVYGQFLWAIGALGLDGCFYT 91
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
L + G+D + DE +G
Sbjct: 92 SKSPLEIVYLRTGQKIIFRGLDDPKKRKGAVFPVGYCAVQW---------FEELDEFNGW 142
Query: 204 PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT------ 257
D L + + + NP R + + + +D T
Sbjct: 143 DD--ISSTLRTYRRGGSRFWTFYSYNPPRSLWSWVNKKALEMQRKRGCVVDHSTYLDVID 200
Query: 258 ---VEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ + F E R E G+ F + + + +
Sbjct: 201 GGHSDWLGEKFIEDADYEKEEHPTGYRWEFLGEITGTGGSVF---ENVVQVSLSDKEVES 257
Query: 315 YAPLIMGCDIAEEGG-DNTVVVLRRGPV---IEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
+ L G D V+ + + + + YR
Sbjct: 258 FDNLRCGVDWGWFPDPWRFVMCEWQPARRRLVLFRELSANRTTPQDTGAMVREALTYRDA 317
Query: 371 A 371
Sbjct: 318 R 318
>gi|198274524|ref|ZP_03207056.1| hypothetical protein BACPLE_00672 [Bacteroides plebeius DSM 17135]
gi|198272578|gb|EDY96847.1| hypothetical protein BACPLE_00672 [Bacteroides plebeius DSM 17135]
Length = 482
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 42/344 (12%), Positives = 98/344 (28%), Gaps = 17/344 (4%)
Query: 58 FMEVVDAHCLNSVNNPNP-EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI--CLA 114
F++ V + + + +++ A+S GK+ +++ + W++ P SV+ C +
Sbjct: 48 FLKKVAEAFMRVYESYSAGIIYRLAVSMPPRAGKSYISSLFIAWMLGHFPEESVMRNCCS 107
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH------CSLGIDSKH 168
++ + ++ K ++ + W + +G
Sbjct: 108 DTLYNKLSYDARDIVKSKRFHEIFPDIYLKGDKQNVKSWNVEGARQVSYFGGGVGGTVIG 167
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ +++ + + + GT D G L +
Sbjct: 168 FGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHDSRIEG-NCCLIDIGTRWSANDVL 226
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
+GK+ EI D V + + R D + E +
Sbjct: 227 GRLEEAGKYNEIIRIAALDENERSF-CEDVHTTE----YYLELRSETDESIWMAEYMQEP 281
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV-VVLRRGPVIEHLFD 347
+ F +++ L P + + D GP
Sbjct: 282 FEAKGLLFPKSSLMRFKLADIAGKRPDGTIGACDTADKGDDDFCAPFAKVFGPKYFITDV 341
Query: 348 WSKTDLRTTNN-KISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
D +++ +V D + I++NN G + L
Sbjct: 342 LFTKDPVEVTEPRLAQMVIDTECDQLRIESNNGGRIFAINVRKL 385
>gi|325681270|ref|ZP_08160800.1| phage terminase, large subunit, PBSX family [Ruminococcus albus 8]
gi|324107192|gb|EGC01478.1| phage terminase, large subunit, PBSX family [Ruminococcus albus 8]
Length = 419
Score = 43.0 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 31/280 (11%), Positives = 74/280 (26%), Gaps = 23/280 (8%)
Query: 87 GIGKTTLNA-WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GKT+ A ++W M + + L+ L E+ KW L F +
Sbjct: 40 RSGKTSCMALSFLMWSMGRFDKRNFGLCGKTIVSLRRNLLTELLKWAEKL----GFTVTE 95
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
++ + +D + + + ++ DE + P
Sbjct: 96 ----------NLSKNYMDVDFGGRRNRYYLFGGKDEGSASLIQGVTLAGVLMDETALMPR 145
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--QIDTRTVEGIDP 263
+ + + ++ NP F + D + +
Sbjct: 146 SFVEQAVARCSVTGSKLWF--NCNPDNPYHWFKREWIDKADSKNLLYVHFELSDNPSLSE 203
Query: 264 SFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
+ + Y V G++ + + + E P ++ CD
Sbjct: 204 AVIKRYERLY--TGAFYERFVRGRWSAAEGLVYPMFD--ERKYVCGELPQDCGRFVVSCD 259
Query: 324 IAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGL 363
+ + + G + L ++ R + +
Sbjct: 260 YGTVNPSSFGLWGQSGGIWYRLAEYYYDSAREGSRRTDEE 299
>gi|270339484|ref|YP_003331564.1| DNA packaging terminase subunit 1 [Felid herpesvirus 1]
gi|254940200|gb|ACT88343.1| DNA packaging terminase subunit 1 [Felid herpesvirus 1]
Length = 734
Score = 43.0 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 16/163 (9%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R GKT L+ ++T GI V A+ + ++ E+ L WF +
Sbjct: 260 PRRHGKTWFLVPLIAVTLATIKGIKVGYTAH-IRKATEPVFEEIGARLRQ-----WFGV- 312
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ S T G + DEA+
Sbjct: 313 -----SRVDHVKGETISFSFPDG----AKSTIVFASSHNTNGIRGQDFNLLFVDEANFIR 363
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
I+GFL + N ++ ++N + S F D+
Sbjct: 364 PEAVQTIIGFLNQTNCKIIFVSSTNTGKSSTSFLYNLRGAADE 406
>gi|21241826|ref|NP_641408.1| phage-related DNA maturase [Xanthomonas axonopodis pv. citri str.
306]
gi|21107205|gb|AAM35944.1| phage-related DNA maturase [Xanthomonas axonopodis pv. citri str.
306]
Length = 526
Score = 43.0 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 40/156 (25%), Gaps = 18/156 (11%)
Query: 25 KLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA 84
F NF F W P +P Q + + + + A
Sbjct: 15 WEDFRNFA--FDLWTHLALP-----SPTPVQYDICSYL-----------QHGPRRRMVQA 56
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
RG+GK+ L A V WL+ P ++ ++ S+ + + P H
Sbjct: 57 FRGVGKSFLTAGYVCWLLWKDPQHKIMVVSASKERADAFSVFVKQIIETFEPLSHLRPRS 116
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+ K +
Sbjct: 117 DQRNSNLAFDVGPALPDQSPSVKSVGITGQLTGSRA 152
>gi|195436432|ref|XP_002066172.1| GK22219 [Drosophila willistoni]
gi|194162257|gb|EDW77158.1| GK22219 [Drosophila willistoni]
Length = 1284
Score = 43.0 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 29/239 (12%), Positives = 65/239 (27%), Gaps = 17/239 (7%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ G+GKT + A L+ P +I +A + + +++ ++P
Sbjct: 81 TLVVLPTGLGKTFIAAVLMYNYYRWYPKGKIIFMAPTRPLVSQ----QIAACQKIMPFTD 136
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT---YGMAII 196
++ P V L + + + + D H+ ++
Sbjct: 137 QDTVELTGRLPR-----VKRMELWRTKRVFFATPQVVHSDMLDQADQSHSFPFGSVKLLV 191
Query: 197 NDEASGTPDVINLG-ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP---LDDWKRFQ 252
DEA + L N + S + + + + R++
Sbjct: 192 VDEAHRAKGRYAYTQVTESLMAHNPQFRMLALSATPGRTMEDVAAVCRNLYISNLAVRWE 251
Query: 253 IDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
I I+ D E Q + + I +++ A
Sbjct: 252 NSIDVQPYIHKRTIRTILVSL-KDRIKEPRERLLQIIEPYLRQLIQAEVLKGARGNITK 309
>gi|85105138|ref|XP_961895.1| activating signal cointegrator 1 complex subunit 3 [Neurospora crassa
OR74A]
gi|28923479|gb|EAA32659.1| activating signal cointegrator 1 complex subunit 3 [Neurospora crassa
OR74A]
Length = 2066
Score = 43.0 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 22/171 (12%)
Query: 59 MEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMST-RPGIS 109
+E + A N +VF + + G GKT + L +W RPG
Sbjct: 1166 LEEIYAQRFQYFNPMQTQVFHTLYHTPANVLLGSPTGSGKT-VACELAMWWAFRERPGSK 1224
Query: 110 VICLANSETQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V+ +A + ++ V W L ++ + + + +
Sbjct: 1225 VVYIAPMKALVRER----VKDWGARLAKPLGLKLVELTGDNTPDTRTIQDADIIITTPEK 1280
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1281 WDGISRSWQTRGYVR-------KVSLVIIDEIHLLAGDRGPILEIIVSRMN 1324
>gi|226288385|gb|EEH43897.1| activating signal cointegrator 1 complex subunit 3 [Paracoccidioides
brasiliensis Pb18]
Length = 2011
Score = 43.0 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMST-RPGI 108
+E + N ++F + + G GKT + A L +W RPG
Sbjct: 1129 ILEEIYGQRFQFFNPMQTQIFHTLYHTPTNVLLGSPTGSGKT-VAAELAMWWAFRERPGS 1187
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1188 KVVYIAPMKALVRER----VHDWKRRLTVPMGLKLVELTGDNTPDTRTIRDADIIITTPE 1243
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1244 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGSNRGPILEIIVSRMN 1288
>gi|82751447|ref|YP_417188.1| phage-associated terminase large subunit [Staphylococcus aureus
RF122]
gi|215401206|ref|YP_002332511.1| putative terminase large subunit [Staphylococcus phage
phiSauS-IPLA88]
gi|82656978|emb|CAI81415.1| phage-associated terminase large subunit [Staphylococcus aureus
RF122]
gi|215260433|gb|ACJ64564.1| gp36 [Staphylococcus phage phiSauS-IPLA88]
Length = 429
Score = 43.0 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 38/341 (11%), Positives = 95/341 (27%), Gaps = 16/341 (4%)
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
+ N ++ + RG K+ A ++ + +++ + K + + ++
Sbjct: 16 NKFWHNKSFYRV-VKGSRGSKKSKTTAINFIYRIMKYDWANILVVRRFSNTNKQSTYTDL 74
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH 188
+ L H F+ + G+D T + +
Sbjct: 75 KWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKIT--SITVDTGILCWAWFE 132
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP----RRLSGKFYEIFNKP 244
Y + ++ I G + + +T NP L F++ K
Sbjct: 133 EAYQIETFAKFSTVV-----ESIRGSYDSPDFFKQITVTFNPWSERHWLKSTFFDEETKL 187
Query: 245 LDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEE 304
+ + R E +D E Y + R+ G + + F + +
Sbjct: 188 NNTF-SDTTTYRVNEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNFKVTD- 245
Query: 305 ALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF-DWSKTDLRTTNNKISGL 363
+ + G D T++ + L+ ++ + I +
Sbjct: 246 -FDWREKFKRTQEIAHGMDFGFTFDPTTLINTVVDLKNKELWIYDEHSEKAMLTDDIINM 304
Query: 364 VEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
+++ I A++ R + G + +
Sbjct: 305 IKRKGYQDAHIVADSAEKRLITEISRKGVPNIKPSVKGANT 345
>gi|313896443|ref|ZP_07829994.1| putative phage terminase, large subunit [Selenomonas sp. oral taxon
137 str. F0430]
gi|312974867|gb|EFR40331.1| putative phage terminase, large subunit [Selenomonas sp. oral taxon
137 str. F0430]
Length = 533
Score = 43.0 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 34/298 (11%), Positives = 79/298 (26%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + I G+ GK+ L A + L L V
Sbjct: 50 DWQERIIRDIFGILKPNGYR---QFNTAYIEIGKKNGKSELAAAVALLLCCGDGEERAEV 106
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q + ++ + + + P ++ + ++ + L ++
Sbjct: 107 YGCAADRQQA-SIVFEVAADMVRMCPALGKRVKILASQKRMVYLPTNSFYQVLSAEA--- 162
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
++ F H + + G+ D + +T + I
Sbjct: 163 -YSKHGFNIHGV-VFDELHTQANRKLFDVMTKGSGDARMQPLYFLITTAGTDTQSICYET 220
Query: 230 PRRLSGKFYE-----------IFNKPLDDWKRFQIDTRTVE------GIDPSFHE-GIIA 271
++ K +DW ++ R+ GID
Sbjct: 221 HQKAKDILEGRKIDPTFYPVIYGAKEDEDWTDPEVWKRSNPSLGITVGIDKVQAACDSAR 280
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + + R Q+ +Q + A+ + G D++
Sbjct: 281 QNPAEENSFRQLRLNQWVKQSVRWMPMDRWDACAIPVDADGLEGRVCYGGLDLSSTMD 338
>gi|315162200|gb|EFU06217.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
Length = 546
Score = 43.0 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 53/387 (13%), Positives = 103/387 (26%), Gaps = 46/387 (11%)
Query: 16 FDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
DL +++ ++ F +FFP +Q V + N
Sbjct: 40 DDLYIDEKMLENYIKFSEKYFFPLSI-------------YQKFIATFVFMYWKN---KDR 83
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI---CLANSETQLKTTLWAEVSKW 131
+ ++ GRG GK + L + +S GI ANSE Q K + EV
Sbjct: 84 VVFREFLVTLGRGGGKNGFLSTLGAFFISELHGIRGYNSTITANSEDQAK-MSFDEVYNV 142
Query: 132 LSLLPNKHWFEMQSLSLHPAP-------WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ K F + + ++ D + + P
Sbjct: 143 ILSRNLKKHFNAKKSVITGKAMAAEFKFRTNNPKTMDSARDGCLFFDEIHGFINNSPVKV 202
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G+ + + GF ++ I+T R+ +
Sbjct: 203 Q----RSGLGKVKHARTWYFGTNGYVREGFYDKQIERSMKILTGKTDRIGYFPFICKLDS 258
Query: 245 LDDWKRFQIDTRTVEGIDP--SFHEGIIARYGLD------SDVTRVEVCGQFPQQDIDS- 295
+D+ + + + + E I D R E + +
Sbjct: 259 IDELNDMNMWAKANPMFNEKTEYAEQIFEEVKEDYLDLEEEPSGRQEFVIKRMNFTEGND 318
Query: 296 ---FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG-PVIEHLFDWSKT 351
+ A N+E + G D A ++ +L + L
Sbjct: 319 ERDVTTPEKLR-ATNQEIPELKGMSCVAGFDYASISDFASIGLLFKKEDKYIWLSHSFVR 377
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANN 378
K+ +E++ I +
Sbjct: 378 KGFLEKVKVKAPIEEWEEQGFITIVDG 404
>gi|332088051|gb|EGI93176.1| hypothetical protein SB521682_2984 [Shigella boydii 5216-82]
Length = 753
Score = 42.6 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 21/201 (10%), Positives = 50/201 (24%), Gaps = 11/201 (5%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGK---TTLNAWLVLWLMSTRPG 107
P +WQ EF + P ++ G G+ + L ++ R
Sbjct: 455 PDAWQREFFIARLGWMVQRPERRCPISI-LHVATAHGTGRGWVSQLMERVLGPWNCARTR 513
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ ++C + Q L+ + + + + + K
Sbjct: 514 MKILC----DNQFHDYLYNTLLCTIDEVRENDKRYEVNDKIRDVLTEPRFEVNRKYGSKK 569
Query: 168 HY-STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN--ANRFW 224
+ D +A++ + + G L++ + A +W
Sbjct: 570 TMDIYTGFLFYTNHFDALALPEEDRRIAVLGGPDFAATEEHYASLYGALSDSDFIAQVYW 629
Query: 225 IMTSNPRRLSGKFYEIFNKPL 245
+ K
Sbjct: 630 YLMGVDLSRFNWQRAPETKER 650
>gi|171690334|ref|XP_001910092.1| hypothetical protein [Podospora anserina S mat+]
gi|170945115|emb|CAP71226.1| unnamed protein product [Podospora anserina S mat+]
Length = 1993
Score = 42.6 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W PG V+ +A + ++ V W
Sbjct: 1155 HRPVNVLLGSPTGSGKT-VAAELAMWWAFREHPGSKVVYIAPMKALVRER----VKDWGD 1209
Query: 134 LLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L ++ + + + + + + R++
Sbjct: 1210 RLAKPLGLRLVELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQTRGYVR-------KV 1262
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
++ DE + ++ N
Sbjct: 1263 SLVVIDEIHLLAGDRGPILEIIVSRMN 1289
>gi|302306720|ref|NP_983089.2| ABR142Wp [Ashbya gossypii ATCC 10895]
gi|299788653|gb|AAS50913.2| ABR142Wp [Ashbya gossypii ATCC 10895]
Length = 1958
Score = 42.6 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 39/141 (27%), Gaps = 12/141 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W PG V+ +A + ++ L K
Sbjct: 1153 VFVGSPTGSGKT-VVAELAIWHAFRDFPGSKVVYIAPMKALVRERLHD---------WKK 1202
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ L S + D+ T + + +I D
Sbjct: 1203 RITPVTGDRLVELTGDSVPDPRDVK-DATIIITTPEKFDGISRNWQTRKFVQNVSLVIMD 1261
Query: 199 EASGTPDVINLGILGFLTERN 219
E + ++ N
Sbjct: 1262 EIHLLASDRGPILEMIVSRMN 1282
>gi|229194206|ref|ZP_04321061.1| phage terminase, large subunit [Bacillus cereus ATCC 10876]
gi|228589267|gb|EEK47231.1| phage terminase, large subunit [Bacillus cereus ATCC 10876]
Length = 539
Score = 42.6 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 36/346 (10%), Positives = 80/346 (23%), Gaps = 31/346 (8%)
Query: 7 TNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHC 66
+ + ++ L + + F WQ ++
Sbjct: 8 KSCKEQKLLMKYVRKMLSRDDIYFNAKAAEDSINVPAKYFPFEL-FPWQKFLNALMYGVR 66
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---VICLANSETQLKTT 123
+ + I GRG GKT A+ ++M+ GI+ + +A SE Q K
Sbjct: 67 FKK--DDRIVFDEVLILMGRGGGKTGYMAYDSFYMMTGHHGINNYDIDVVATSEDQAKR- 123
Query: 124 LWAEVSKWLS-----------LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+ +V +S + + + S+
Sbjct: 124 TFTDVYNVISTPSFKEKFKKIFKWTLEEIQHKKTNSVMNYNTSNSRTKDGKRTGCVIFDE 183
Query: 173 CRTYSEER----PDTFVGHHNTYGMAIINDEASGTP---DVINLGILGFLTERNANRFWI 225
Y + G + + D + L+ + ++
Sbjct: 184 AHEYENYDNINVYTSGQGKVRGSRIIYTTTDGHVRGGPLDDLKETAKLILSGEIEDIHFL 243
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
G+ + + ++ ++ + L + +
Sbjct: 244 PFICKLDSEGEVDD--PANWEKANPSLPYNDELKIKMKREYQKMQRNSKLRVEFMTKRMN 301
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYA-PLIMGCDIAEEGGD 330
E +P PD I D A+
Sbjct: 302 IPISNILETVC---TWDELERTNQPIPDLSGFECIGAVDFAQVRDF 344
>gi|322695748|gb|EFY87551.1| activating signal cointegrator 1 complex subunit 3 [Metarhizium
acridum CQMa 102]
Length = 1950
Score = 42.6 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 50/171 (29%), Gaps = 22/171 (12%)
Query: 59 MEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMST-RPGIS 109
+E + A N ++F + + G GKT + A L +W RP
Sbjct: 1107 LEEIYAQRFQFFNPMQTQIFHTLYHTSANVLLGSPTGSGKT-VAAELAMWWAFRERPKSK 1165
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS-LSLHPAPWYSDVLHCSLGIDSKH 168
V+ +A + ++ V W L ++ + + + +
Sbjct: 1166 VVYIAPMKALVRER----VKDWGKRLAQPLGLKIVELTGDNTPDTRTIKDADIIITTPEK 1221
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1222 WDGISRSWQTRGYVR-------QVSLVIIDEIHLLAGDRGPILEIIVSRMN 1265
>gi|227329421|ref|ZP_03833445.1| phage terminase GpA [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 628
Score = 42.6 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 37/257 (14%), Positives = 71/257 (27%), Gaps = 30/257 (11%)
Query: 22 DEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGA 81
KL S F G S+Q E ++++D P+ K
Sbjct: 19 PPQKLLPSEFA-ETHLVLPDGASAGQKIRLYSFQREMLDIIDD----------PQYRKVV 67
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I KTT+ + + M T ++ + +LK ++ K + + +
Sbjct: 68 YKTSAQIAKTTILNSALFYWMYT-DSSNIGIAQATGNELKQWKAGKIDKTIEQVSVLNNL 126
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + ++ L + Y + II DE S
Sbjct: 127 I---TDKNDKRYANNANQIQLRDGNFLYFM--------SLGSPNHLRGKTLKRIILDEVS 175
Query: 202 GTPDVINLG-----ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
G +T+ A +++S P F D + F ++
Sbjct: 176 AVDLNDPEGNPIRLAEQRITDFGAEGKVLISSTPTFSGDAIDIEFQN--SDQRHFHVNCP 233
Query: 257 TVEGIDPSFHEGIIARY 273
+ E I +
Sbjct: 234 HCQYEHELLFENIQFDW 250
>gi|194366277|ref|YP_002028887.1| Terminase [Stenotrophomonas maltophilia R551-3]
gi|194349081|gb|ACF52204.1| Terminase [Stenotrophomonas maltophilia R551-3]
Length = 602
Score = 42.6 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 28/247 (11%), Positives = 58/247 (23%), Gaps = 23/247 (9%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+ E F E + F Q + +
Sbjct: 32 YFDQEAADKKIAFFEEVLRLSEGQFEGKPFQL-HPSQAFKIGSLFGWKQADGAR---RFR 87
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ I G+G GK+ + + L + G V +A+ + Q L+ + K + P
Sbjct: 88 RAYIEEGKGNGKSPMAGGIALIGLCADQEAGAQVYAVASHKDQA-GILFRDAVKMVKASP 146
Query: 137 N-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
K E S+ Y +
Sbjct: 147 ALKKRLEFSGGEGKEYNIAHHKSQSYFRPASRDVGKTGSGYRPH--------------FV 192
Query: 196 INDEASGTPD-VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
+ DE D I + R + +++T++ + + +
Sbjct: 193 LADEVHEMADGKIIEMMENGFKFRRSPLLFMITNSGSDRNSVAWAEHEHAVKVAAGHHEA 252
Query: 255 TRTVEGI 261
+
Sbjct: 253 VNDPTFV 259
>gi|119385360|ref|YP_916416.1| phage terminase [Paracoccus denitrificans PD1222]
gi|119375127|gb|ABL70720.1| phage Terminase [Paracoccus denitrificans PD1222]
Length = 544
Score = 42.6 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 44/355 (12%), Positives = 85/355 (23%), Gaps = 51/355 (14%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMS------TRPGISVICLA 114
+ V + + + GRG KT L+A L L + +P +I A
Sbjct: 65 LANFQKKFVKGAFGKGVTVGVLSIGRGNAKTALSAGLALAELVGALQEDPQPNREIIFAA 124
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ Q + + V +++ LP + +
Sbjct: 125 RNRDQAR-IAFNFVLGYINGLPESDQAQFTIRRGSKLEI--------------EFGGNGG 169
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE----RNANRFWIMTSNP 230
+ I DE + + + R+ I TS P
Sbjct: 170 GLARCIAADGKSILGGAPTLAIMDERAAWEREKGDNLENAILSGLGKRDGRALIISTSAP 229
Query: 231 RRLSGKFYEIFNKPLDDWKRFQ------------------IDTRTVEGIDPSFH----EG 268
+ + P + + G P + +
Sbjct: 230 DDTNTFSRWLDEPPPGSYVQEHRPPFGLPADDLESLLLANPGAAEGIGSTPEWLLSAAKT 289
Query: 269 IIARYGLDSDVTRVEVCGQFPQQDIDSFIPL--NIIEEALNREPCPDPYAPLIMGCDIAE 326
IAR G R + + S + + + E P P I+G D+
Sbjct: 290 AIARGGAALSSFRNLNRNERVSIENRSVLVTVDEWLSAEVAPEDLPPREGPCILGVDLGG 349
Query: 327 EGGDNTVVVLR-RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
+ +E L + + +Y + + G
Sbjct: 350 SRSMSAAAFYWPETGRLEALGTFPAFPSLADRGAADAVAHRYVEMHERGELSVMG 404
>gi|324504396|gb|ADY41899.1| ATP-dependent RNA helicase DDX20 [Ascaris suum]
Length = 937
Score = 42.6 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 24/207 (11%), Positives = 56/207 (27%), Gaps = 18/207 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLM-STRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ A G GKT + A + L + + R V+ +A + L P
Sbjct: 61 VQAKSGTGKTLVFALMALEGLNAQRRQPQVMIIAPTREIAMQIAVT----VRRLAPPVIH 116
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ I + + T + + + DEA
Sbjct: 117 VGVFVGGGRSVADDIK------EIRKGVHIAVGTTGRLCQLVNDDLLPTNHVHLFVLDEA 170
Query: 201 SGTPDVINLGILGFL--TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
+ + FL + N + + ++ E + + +++ V
Sbjct: 171 DKLMEENFQKDINFLFSSLPNNKQMAVFSATYPGDLD---ETLARYMKKAHLIRLNAEDV 227
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVC 285
+ + + + Y D + +
Sbjct: 228 QLL--GIKQYVAMSYSEDGPTSLHRLL 252
>gi|257421722|ref|ZP_05598712.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|257163546|gb|EEU93506.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|295112637|emb|CBL31274.1| Phage terminase-like protein, large subunit [Enterococcus sp. 7L76]
Length = 546
Score = 42.6 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 55/388 (14%), Positives = 105/388 (27%), Gaps = 48/388 (12%)
Query: 16 FDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
DL +++ ++ F +FFP +Q V + N
Sbjct: 40 DDLYIDEKMLENYIKFSEKYFFPLSI-------------YQKFIATFVFMYWKN---KDR 83
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI---CLANSETQLKTTLWAEVSKW 131
+ ++ GRG GK + L + +S GI ANSE Q K + EV
Sbjct: 84 VVFREFLVTLGRGGGKNGFLSTLGAFFISELHGIRGYNSTITANSEDQAK-MSFDEVYNV 142
Query: 132 LSLLPNKHWFEMQSLSLHPAP-------WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ K F + + ++ D + + P
Sbjct: 143 ILSRNLKKHFNAKKSVITGKAMAAEFKFRTNNPKTMDSARDGCLFFDEIHGFINNSPVKV 202
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G+ + + GF ++ I+T R+ +
Sbjct: 203 Q----RSGLGKVKHARTWYFGTNGYVREGFYDKQIERSMKILTGKTDRIGYFPFICKLDS 258
Query: 245 LDDWKRFQIDTRTVEGIDP--SFHEGIIARYGLD------SDVTRVEVCGQFPQQDI--- 293
+D+ + + + + E I D R E +
Sbjct: 259 IDELNDMNMWAKANPMFNEKTEYAEQIFEEVKEDYLDLEEEPSGRQEFVIKRMNFTEGND 318
Query: 294 --DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG-PVIEHLFDWSK 350
D P ++ A N+E + G D A ++ +L + L
Sbjct: 319 ERDVTTPEKLL--ATNQEIPELKGMSCVAGFDYASISDFASIGLLFKKEDKYIWLSHSFV 376
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANN 378
K+ +E++ I +
Sbjct: 377 RKGFLEKVKVKAPIEEWEEQGFITIVDG 404
>gi|253579099|ref|ZP_04856370.1| DNA/RNA helicase superfamily II protein [Ruminococcus sp.
5_1_39B_FAA]
gi|251850042|gb|EES78001.1| DNA/RNA helicase superfamily II protein [Ruminococcus sp.
5_1_39BFAA]
Length = 1053
Score = 42.6 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 62/203 (30%), Gaps = 28/203 (13%)
Query: 43 TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM 102
L+ P ++Q E ++ + A ++ +SA G+GKT + A+
Sbjct: 320 RSLQVSIRPYAYQQEILDNLAA------EREVYGHYRNLVSAATGVGKTIIAAFDYKAFK 373
Query: 103 STRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
P ++ +A+ K L + K+ +L + ++ E+ P +
Sbjct: 374 EKNPRARLLFVAHR----KEILEQSIQKFQEVLNDFNFGELYVDGYKPTDIEHLFISIQS 429
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+K + Y II DE L
Sbjct: 430 FNSAKLSQWTSK---------------DYYDFIIVDEFHH---AAADSYQELLAYYEPKI 471
Query: 223 FWIMTSNPRRLSGKFYEIFNKPL 245
+T+ P R+ GK +
Sbjct: 472 LLGLTATPDRMDGKDILKYFDGR 494
>gi|46124035|ref|XP_386571.1| hypothetical protein FG06395.1 [Gibberella zeae PH-1]
Length = 1968
Score = 42.6 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKW-L 132
+ + G GKT + A L +W RP V+ +A + ++ V W +
Sbjct: 1148 HTPANVLLGSPTGSGKT-VAAELAMWWAFRERPKSKVVYIAPMKALVRER----VKDWGV 1202
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L ++ + + + + + + R++
Sbjct: 1203 RLARPLGLKLVELTGDNTPDTRTIQDADIIITTPEKWDGISRSWQTRGYVR-------QV 1255
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1256 SLVIIDEIHLLAGDRGPILEIIVSRMN 1282
>gi|213402789|ref|XP_002172167.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275]
gi|212000214|gb|EEB05874.1| antiviral helicase SLH1 [Schizosaccharomyces japonicus yFS275]
Length = 1949
Score = 42.6 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 12/141 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
I A G GKT + A L W PG V+ +A + +K L ++ + +
Sbjct: 1158 VFIGAPTGSGKT-MAAELATWWAFREHPGSKVVYIAPMKALVKERLKDWGARLVEPM--- 1213
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
H ++ + + + + + + R + + +I D
Sbjct: 1214 HINMIELTGDTSPDSKTIMGADIIITTPEKWDGITRNWRTRKYV-------QNVSLVIID 1266
Query: 199 EASGTPDVINLGILGFLTERN 219
E + ++ N
Sbjct: 1267 EIHLLGSDRGPILEMIVSRMN 1287
>gi|195136690|ref|XP_002012487.1| GI16508 [Drosophila mojavensis]
gi|193906452|gb|EDW05319.1| GI16508 [Drosophila mojavensis]
Length = 293
Score = 42.6 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 28/238 (11%), Positives = 65/238 (27%), Gaps = 18/238 (7%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
+ G+GKT + A ++ L P +I +A + + +
Sbjct: 61 YQHSIVQAALYRNTLVVLPTGLGKTFIAAVVMYNLHRWYPESKLIFMAPT----RPLVAQ 116
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
+++ ++P ++ L + + + + DT G
Sbjct: 117 QIAACQKIMPF-----CPEDTVELTGRLPRAKRAELWATKRVFFATPQVVQSDMLDTGDG 171
Query: 187 HHNTYGM--AIINDEASGTPDVINLG-ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
Y ++ DEA + L RN + S + + +
Sbjct: 172 LQFPYMSIKLLVVDEAHRAKGRYAYTQVTDSLMARNPYFRMLALSATPGRTMEDVAAVCR 231
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI 301
I V D + + + + V + + P+ + I +
Sbjct: 232 N------LCISHLEVRWDDSIDVRQYVHKRSMRTIVVPLNDRIKEPRAQLLQIIDPYL 283
>gi|308071887|emb|CBW54808.1| putative DNA maturase B [Pantoea phage LIMElight]
Length = 614
Score = 42.6 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 64/231 (27%), Gaps = 13/231 (5%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
+ + + K ++A RG K+TL A +W + V+ L+
Sbjct: 55 MRFLGFELTDMQADIADYMQYGPRKKMVAAQRGEAKSTLAALYSVWRLIQDQRCRVLILS 114
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
E Q V + + P W + S + + +HC L K S C
Sbjct: 115 GGEQQASEVA-TLVIRLIETWPLLCWLKADSTRGDRTSYTAYDVHCDLKPLDKSPSVACI 173
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ + G +I D+ T + + L + + I T
Sbjct: 174 GVTA----SLQGKRAD---LLIPDDIETTKNGMTQTEREKLLTVSKDFAAICTHGDT--- 223
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEV 284
+ +K V + RYG E+
Sbjct: 224 -LYLGTPQTKDSIYKTLPARGFEVRVWPGRIPSLEMEERYGETLAPYIHEL 273
>gi|145295971|ref|YP_001138792.1| hypothetical protein cgR_1895 [Corynebacterium glutamicum R]
gi|57158129|dbj|BAD84098.1| hypothetical protein [Corynebacterium glutamicum]
gi|140845891|dbj|BAF54890.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 549
Score = 42.6 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 42/419 (10%), Positives = 104/419 (24%), Gaps = 36/419 (8%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + N R GKT L+ ++ W + ++ A
Sbjct: 86 QQAYAALYQPRRYGLPNGKLRFSLSLTLLSRQQGKTLLSKIVIEWFLFRMRVSEMMISAQ 145
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST---- 171
L+ E+ + L+P + + + + + +
Sbjct: 146 DYNHA-NKLFEEIRDEVDLIPALRKKQAKISNNNGNKYIKSTAGGHMRPIGVIKGAGRGA 204
Query: 172 -----------MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
++ + G + A V+ I E
Sbjct: 205 TNEFLYLDELREQSSWGGWNSLSSTTIAVLNGFILATSNAGDADAVVLNEIQDKAQEAID 264
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
TS + + W++ T S +
Sbjct: 265 QGRTEHTSTFLIEWSADPVLDYRDERAWRQGNPSLGTGRLTMDSLRGEME---TKSESAF 321
Query: 281 RVEVCGQFPQQDIDS---FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
R E Q + +D+ IP++ + + + + + + V V
Sbjct: 322 RTENLCQRVDKLVDAITPVIPISEWDVFGRAQKPKFDSSSVCVEVSPVDGQTRVVVNVRT 381
Query: 338 RGPVIEHLFDWSKTD--LRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVY 395
+G ++D + T + LV++ PD +++D + + L +G
Sbjct: 382 KGNGHFLSVAPFESDMSIDETVTAVKSLVDQIDPDVVVVDKKSAAHVLIEPLSRVGVETQ 441
Query: 396 RVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS-GLIQNLKSLKSFIVPNTGEL 453
+ + + + + + S + G++
Sbjct: 442 SPDYASML-----------QTWTDFERYFAEGKIFHEQSQVWADELSTSKLRMDTKGQV 489
>gi|30089892|ref|NP_839922.1| putative terminase large subunit [Lactococcus phage P335 sensu
lato]
gi|21954681|gb|AAM83070.1|AF489521_31 putative terminase large subunit [Lactococcus phage 4268]
Length = 646
Score = 42.6 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 49/366 (13%), Positives = 103/366 (28%), Gaps = 51/366 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + ++ + IS GRG GKT + A L+ + S +
Sbjct: 109 MEWQKFMLSLLIGWRNKEGGK---RFSRAIISVGRGQGKTYMLAILMAY--SFFVESRGL 163
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+N + + + + K L + +++P +D SL D
Sbjct: 164 --SNQDFLVSSINAKQTGKLYGYLKS---MINVLRTINPWKNIADKTDLSLQADKIIMRN 218
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSN 229
+ + + I DE + I+ + G + N I T+
Sbjct: 219 HNNVIRPISHEAGQYD-SYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQISTAY 277
Query: 230 PR-------RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF-HEGIIARYG------- 274
P + L D + + + +D ++ E +
Sbjct: 278 PDPTVPFHEDEKMLQQAMEQDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPLLDLASE 337
Query: 275 -----------LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
D+DV + + + DIDS++ L +E+A+ E
Sbjct: 338 HDNLMQGLLDKRDNDVLTGAVHDFQCKNLNMWLSSDIDSYLNLADVEKAIVPEFNIY-GQ 396
Query: 317 PLIMGCDIAEEGGDNTVVVLR----RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
+G D + + V + + + I ++ +
Sbjct: 397 RCYVGVDYSMSSDNTAVAFVYPYVSEEGQAKWHVEQHSFIPFQAAGSIEAKEKQDGINYR 456
Query: 373 IIDANN 378
++
Sbjct: 457 ELETKG 462
>gi|331652431|ref|ZP_08353450.1| putative phage terminase [Escherichia coli M718]
gi|331050709|gb|EGI22767.1| putative phage terminase [Escherichia coli M718]
Length = 283
Score = 42.6 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 78/273 (28%), Gaps = 33/273 (12%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
+ + P FK I AG G GKT + + + PGI+ A + Q++
Sbjct: 10 NVPQARFLSMPHKFKAYI-AGFGSGKTWVGCGGICKGIWEHPGINQGYFAPTYPQIRDIF 68
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ V E + ++ + Y S E+P T
Sbjct: 69 YPTV-------------EEVAADWGLNVKINEGNKEVHFYYGRQYRGTTICRSMEKPQTI 115
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTER------NANRFWIMTSNPRRLSGKFY 238
VG + DE P + R +T+ P +
Sbjct: 116 VGFKIGNAL---VDELDILPKEKARTAWRKIIARMRYKIDGLRNGIDVTTTPEGFKFVYE 172
Query: 239 EIFNKPLDD------WKRFQIDTRTVE-GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ + + Q T E + + ++ Y ++ + + GQF
Sbjct: 173 QFVKAVREKTELASLYGLVQASTFDNEKNLPADYIPSLLESY--PPELIKAYLRGQFTNL 230
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI 324
+ + N E P P+ +G D
Sbjct: 231 TSGTVYH-QFDRKLNNCEEVEQPGEPIYIGMDF 262
>gi|290473742|ref|YP_003466616.1| putative phage terminase, large subunit [Xenorhabdus bovienii
SS-2004]
gi|289173049|emb|CBJ79822.1| putative phage terminase, large subunit [Xenorhabdus bovienii
SS-2004]
Length = 578
Score = 42.6 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 42/349 (12%), Positives = 95/349 (27%), Gaps = 39/349 (11%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISA----GRGIGKTTLNAWLVLWL--MSTRPGISVICL 113
E L + + P + + +A R K+TL++ + L++ + G V
Sbjct: 96 EQTGEIVLRNDGSGRPVMVRRYRTAYNEVARKNAKSTLSSGIGLYMTGADSEGGAEVYSA 155
Query: 114 ANSETQLKTTLWAEVSKWLSLLP---------NKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
A + Q + ++ + + NK + + P SD +
Sbjct: 156 ATTRDQAR-IVFEDAKNMIKQARPTLGRLFAFNKLAIYQEQSASKFEPLSSDANNLDGLN 214
Query: 165 DSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDE-------ASGTPDVINLGILG 213
+ +T G + I D + G
Sbjct: 215 IHCGIVDELHAHKTRDVWDVLETATGARLQSLLFGITTAGFNKEGICYELRDYAVKVLRG 274
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY 273
+ + + F+ + + F E + + + + E + AR
Sbjct: 275 QV---DDDTFFGIIYTLDKEDDPFDETVWQKANPGLGICKRWDDLRRLAKKAREQVSAR- 330
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
+ + + L + P P+ +G D+A +
Sbjct: 331 ----HNFFTKHMNLWVTAESAWMDMLKWDDSEPLAPPHELKTYPMWVGVDLANKIDICAA 386
Query: 334 VVLRRGP---VIEHLFDWSKTDLRTTNNK-ISGLVEKYRPDAIIIDANN 378
V + +G V W D ++ ++ L K+ + +
Sbjct: 387 VKVWQGNNGHVHADFKFWLPEDRIERCSRQMAELYRKWGEMGALTLTDG 435
>gi|308061499|gb|ADO03387.1| phage-related CUP0950-like protein [Helicobacter pylori Cuz20]
Length = 519
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 47/417 (11%), Positives = 112/417 (26%), Gaps = 54/417 (12%)
Query: 9 PETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLN 68
++ L +L + + F FV K E +W ++++ V
Sbjct: 2 DNKQRALKELAIRELARRDFYQFVR------LKWERYENKPFLDNWHIKYLCRVLECTQP 55
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAW-LVLWLMSTRPGISVIC----------LANSE 117
+ + + + ++ GKT + A + W + + +AN
Sbjct: 56 NTCQSDELIRRLILNMPPSYGKTEIIARCFIAWSLGKDRTKKIFYISYSDELCRKIANQV 115
Query: 118 TQLKT------TLWAEVSKWLSL------LPNKHWFEMQSLSLHPAPWYS------DVLH 159
L + E ++L L + +L +++ D +
Sbjct: 116 RDLMDSFFYKSVFFDEPLEFLQNNSREFILREGGGLFVTTLKSALTGFHANQILIDDPIK 175
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII---NDEASGTPDVINLGILGFLT 216
S K + + + E + + + ++ G +
Sbjct: 176 VSGMSYKKEVNLVNTNFKESVISRLQDTESNITILMQRLGANDLCGFLQSRREFDEETIK 235
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
+ + N + K + + D F+ + E + + G D
Sbjct: 236 KW--RIIQLKALNENKEIYKIKDFEHIREKDTPLFEAKH------NKEQLETLRLQMGND 287
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL 336
+ F P + + + + Y + +++ + +VV+
Sbjct: 288 E--FYSQYQQDPVVSSGGYFDPQYLKKVFTHELGEMNTYIFVDNALSLSQNADNRAIVVV 345
Query: 337 -----RRGPVIEHLFDWSKT-DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL 387
L + T I EKY+ I+++ G L
Sbjct: 346 GVENYNESVRYIVLDCFFGIWSEEETIKHILAAKEKYKDAKAFIESDGGGLVLYRLL 402
>gi|257891069|ref|ZP_05670722.1| terminase large subunit [Enterococcus faecium 1,231,410]
gi|257893878|ref|ZP_05673531.1| terminase large subunit [Enterococcus faecium 1,231,408]
gi|260558861|ref|ZP_05831050.1| terminase large subunit [Enterococcus faecium C68]
gi|257827429|gb|EEV54055.1| terminase large subunit [Enterococcus faecium 1,231,410]
gi|257830257|gb|EEV56864.1| terminase large subunit [Enterococcus faecium 1,231,408]
gi|260075320|gb|EEW63633.1| terminase large subunit [Enterococcus faecium C68]
Length = 432
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 36/271 (13%), Positives = 77/271 (28%), Gaps = 25/271 (9%)
Query: 77 VFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ GRG GK++ A ++ + R ++ + + + L+ +L+ ++ +
Sbjct: 25 ILNIVCKGGRGSGKSSDIAH-IVTQLLMRYAVNAVGIRYVDNTLEQSLYEQMKWAIEQQG 83
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
H F+ L +Y + ER + + + I
Sbjct: 84 VSHLFKFNKSPLKITYLP-----------RGNYMIFRGAQNPERIKSLKDSKFPFAIGWI 132
Query: 197 NDEASGTPDVINLGI-----LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+ A + I G L + +F+ + P+R + + F
Sbjct: 133 EELAEFKTEDEVTTITNSLLRGELDDGLFYKFFYSYNPPKRKQSWVNKKYETSFQPKNTF 192
Query: 252 --QIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLN--IIEEALN 307
+ I F + A + E G + +P + IE
Sbjct: 193 IHHSTYKDNPFISKEFLSEVEAARARNPRRAEWEYDG---KAIGSGVVPFDNLRIEAGSI 249
Query: 308 REPCPDPYAPLIMGCDIAEEGGDNTVVVLRR 338
+ + + G D D V
Sbjct: 250 TDEMVANFDNIRQGLDYG-YATDPLAFVRWH 279
>gi|163941507|ref|YP_001646391.1| terminase [Bacillus weihenstephanensis KBAB4]
gi|163863704|gb|ABY44763.1| Terminase [Bacillus weihenstephanensis KBAB4]
Length = 555
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 62/400 (15%), Positives = 107/400 (26%), Gaps = 49/400 (12%)
Query: 5 LPTNPETEQKL----------FDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSW 54
+ N E EQ + DL + DE+ NF GEK + + +
Sbjct: 19 VKFNKEREQLIEYLEEYVLNRDDLYFDDEMIEDCINF-------GEKW-----YFPLQPF 66
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR---PGISVI 111
Q + V + + GRG GK L + ++ +L+S P ++
Sbjct: 67 QKFLIAFVFLFYKKNGRVFYRKFLWML---GRGGGKNGLISVIIHFLISELHGIPEYNIS 123
Query: 112 CLANSETQLKTTLWAEVSKWLSLL-PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ANSE Q KT+ EV K + + F+ S + + D+K
Sbjct: 124 VVANSEEQAKTSP-DEVHKCIKKNEVLQRAFKTTLTQTVSKATESVLKFRTSNGDTKDGL 182
Query: 171 TMC-----------RTYSEERPDTFVGHHNTYGMAIINDEASGTP---DVINLGILGFLT 216
+ +G I + D + L
Sbjct: 183 RDGAVVFDEIHQYESNKDVRVHISGLGKKKNPREFYIGTDGYVRDGFLDKQKEKAMKVLN 242
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
+ +I N L + Q + EG+ + E
Sbjct: 243 GEARPNAVFPFICKLNDEKEVDDIDNWELANPMLSQPLSEYAEGLLETIKEEYEDLEDDP 302
Query: 277 SD--VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV- 333
S+ + S + I A NR I D A
Sbjct: 303 SNREEFMTKRMNLPVTNLERSVAKWSEI-LATNRPFPDLYAQECIGALDFASIRDFAACG 361
Query: 334 -VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
+ + G I + + + S +Y+
Sbjct: 362 LLFRQNGEYIFKTHSFVRKEFVDIYYGYSKKAGEYKKQKF 401
>gi|322412526|gb|EFY03434.1| terminase large subunit [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 435
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 36/340 (10%), Positives = 83/340 (24%), Gaps = 25/340 (7%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ RG K+ A + + +++ + K + + + + L H F
Sbjct: 38 VKGSRGSKKSKTTALNFVVRLLKYEWANLLVIRRYSNTNKQSTYTDFKWACNQLKVSHLF 97
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ SL + T +EA
Sbjct: 98 KFNE-SLPEITVKATGQKILFRGLDDELKITSITVDVGA-----------LCWAWFEEAY 145
Query: 202 GTPDV-----INLGILGFLTERN-ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--QI 253
+ I G L + + + + F++ F
Sbjct: 146 QIETEDKFSTVVESIRGTLDVPDFFKQITVTFNPWSERHWLKRVFFDEETKRADTFSGTT 205
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD 313
R E +D Y + R+ G++ + F +++ + E
Sbjct: 206 TFRVNEWLDDVDKRRYEDLYKTNPRRARIVCDGEWGVAEGLVFDNFEVVD--FDVEKTIQ 263
Query: 314 PYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF-DWSKTDLRTTNNKISGLVEKYRPDAI 372
G D T++ + + L+ + I ++
Sbjct: 264 RIKETSAGMDFGFTQDPTTLICVAVDLANKELWLYNEHYQKAMLTDHIVKMIRDKNLHRS 323
Query: 373 IIDANNTGARTCDYLEMLGYH--VYRVLGQKRAVDLEFCR 410
I ++ R ++ G V + G+ +
Sbjct: 324 YIAGDSAEKRLIAEIKSKGVSGIVPSIKGKGSIMQGIQFM 363
>gi|321448120|gb|EFX61322.1| hypothetical protein DAPPUDRAFT_340135 [Daphnia pulex]
Length = 157
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 46 EGFSAPRSWQ-LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
A +WQ E H + + + AGRG GKT A +
Sbjct: 22 AHQQAAFNWQFRWLNEQALKHQIEPAGDWWNIWL---LLAGRGAGKTRAAAETLASWAWE 78
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
+PG + A + LK T + S + ++P + S
Sbjct: 79 QPGTRWLVSAPTSGDLKGTCFEGESGLIKVIPPLLIAKYNS 119
>gi|217958118|ref|YP_002336662.1| putative phage terminase, large subunit [Bacillus cereus AH187]
gi|217065806|gb|ACJ80056.1| putative phage terminase, large subunit [Bacillus cereus AH187]
gi|282765821|gb|ADA84944.1| putative phage terminase large subunit [Bacillus phage 11143]
Length = 555
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 52/364 (14%), Positives = 90/364 (24%), Gaps = 41/364 (11%)
Query: 16 FDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNP 75
DL + DE+ F GEK + +S+Q + V +
Sbjct: 40 DDLYFDDEMIEKCIRF-------GEKW-----YFPLQSFQKFLIAFVFLFYKKNSRVFYR 87
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWL---MSTRPGISVICLANSETQLKTTLWAEVSKWL 132
+ GRG GK L + ++ +L M P ++ +ANSE Q KT+
Sbjct: 88 KFLWML---GRGGGKNGLISVIIHFLISEMHGIPEYNISVVANSEEQAKTSPDEVHKCVK 144
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC-----------RTYSEERP 181
+ F+ S + + D+K
Sbjct: 145 RNEILQRAFKTTLTQTVSKATGSVLKFRTSNGDTKDGLRDGAVVFDEIHQYESNKDVRVH 204
Query: 182 DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
+ +G I + ++ + N E+
Sbjct: 205 ISGLGKKKNPREFYIGTDGYVRDGFLDKQKEKAMKVLNGEARPNAIFPFICKLNDEREV- 263
Query: 242 NKPLDDW-----KRFQIDTRTVEGIDPSFHEGIIARYGLDSD--VTRVEVCGQFPQQDID 294
D+W Q + EG+ + E S+ +
Sbjct: 264 -DDPDNWEMANPMLSQPLSEYAEGLLETIKEEYEDLEDDPSNREEFMTKRMNLPVTNLER 322
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV--VVLRRGPVIEHLFDWSKTD 352
S I A NR I D A + G I + + +
Sbjct: 323 SVAKWEEI-VATNRPFPDLYGRECIGALDFASIRDFAACGLLFRVDGEYIFKTHSFVRKE 381
Query: 353 LRTT 356
Sbjct: 382 FVDI 385
>gi|257081783|ref|ZP_05576144.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256989813|gb|EEU77115.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|315573880|gb|EFU86071.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
gi|315580364|gb|EFU92555.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
Length = 546
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 55/388 (14%), Positives = 105/388 (27%), Gaps = 48/388 (12%)
Query: 16 FDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
DL +++ ++ F +FFP +Q V + N
Sbjct: 40 DDLYIDEKMLENYIKFSEKYFFPLSI-------------YQKFIATFVFMYWKN---KDR 83
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI---CLANSETQLKTTLWAEVSKW 131
+ ++ GRG GK + L + +S GI ANSE Q K + EV
Sbjct: 84 VVFREFLVTLGRGGGKNGFLSTLGAFFISELHGIRGYNSTITANSEDQAK-MSFDEVYNV 142
Query: 132 LSLLPNKHWFEMQSLSLHPAP-------WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ K F + + ++ D + + P
Sbjct: 143 ILSRNLKKHFNAKKSVITGKAMAAEFKFRTNNPKTMDSARDGCLFFDEIHGFINNSPVKV 202
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G+ + + GF ++ I+T R+ +
Sbjct: 203 Q----RSGLGKVKHARTWYFGTNGYVREGFYDKQIERSMKILTGKTDRIGYFPFICKLDS 258
Query: 245 LDDWKRFQIDTRTVEGIDP--SFHEGIIARYGLD------SDVTRVEVCGQFPQQDI--- 293
+D+ + + + + E I D R E +
Sbjct: 259 IDELNDMNMWAKANPMFNEKTEYAEQIFEEVKEDYLDLEEEPSGRQEFVIKRMNFTEGND 318
Query: 294 --DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG-PVIEHLFDWSK 350
D P ++ A N+E + G D A ++ +L + L
Sbjct: 319 ERDVTTPEKLL--ATNQEIPELKGMSCVAGFDYASISDFASIGLLFKKEDKYIWLSHSFV 376
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANN 378
K+ +E++ I +
Sbjct: 377 RKGFLEKVKVKAPIEEWEEQGFITIVDG 404
>gi|229199651|ref|ZP_04326296.1| phage terminase, large subunit [Bacillus cereus m1293]
gi|228583797|gb|EEK41970.1| phage terminase, large subunit [Bacillus cereus m1293]
Length = 536
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 50/370 (13%), Positives = 99/370 (26%), Gaps = 50/370 (13%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
EK P FS +WQ + + + GRG GK ++
Sbjct: 43 EKPAPYFPFSL-FAWQRFCNAFIYGVRYADGRL---MFDRYLLLLGRGAGKNGYISYDCF 98
Query: 100 WLMSTRPGIS---VICLANSETQLKTTLWA-----EVSKWLSLL-----PNKHWFEMQSL 146
+++S GI + +A SE Q KT+ E K+ L +K +
Sbjct: 99 YMLSGHHGIKNYDIDIVATSEDQAKTSFEDVLNILETPKFARKLKKVFYKSKILIKHIKT 158
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEA-- 200
S+ Y + + +G + I +
Sbjct: 159 KSKFEFNTSNARTKDGKRSGTVIFDELHEYEDYSNIKVFTSGLGKKKDPRIFYITTDGNV 218
Query: 201 -SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI---------FNKPLDDWKR 250
G D + L + + + ++ + + +
Sbjct: 219 RGGVLDDMKEEAQMVLNKELPDSTLFPFICKLDEEQEVHDESMWEKANPSYRYNENLQHK 278
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ + ++ E + R L + TR EV + + P +I
Sbjct: 279 MRKEYHDMKRNSALRIEFMTKRMNLPVEDTRKEVATYEERLATEQPFPDDI--------- 329
Query: 311 CPDPYAPLIMGCDIAEEGGDNTV--VVLRRGPVI---EHLFDWSKTDLRTTNNKISGLVE 365
I D A+ +V + + G + L+ N I +
Sbjct: 330 ---QGIECIGAVDFAQIRDFCSVGILFKKDGKRYWMQHTFMHHTAPKLQDINQDIIKIAI 386
Query: 366 KYRPDAIIID 375
+ ++ D
Sbjct: 387 EKGLLTVVYD 396
>gi|325182937|emb|CCA17392.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
gi|325189887|emb|CCA24367.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 1653
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 43/307 (14%), Positives = 79/307 (25%), Gaps = 48/307 (15%)
Query: 27 SFSNFVLHFFPWGE-------KGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFK 79
++F E L+ P ++Q + N
Sbjct: 126 DPVATSKYYFTDEECKATLPIDTQALKTLVFPGNYQ---IREYQVSIAEKAMYHN----- 177
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+S G+GKT + + ++ P VI LA ++ V++ + +
Sbjct: 178 TLVSLPTGLGKTLIASVVMHNFYRWFPNGKVIFLAPTK--------PLVTQQIQACYEIN 229
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + + T ++ + F H + +I DE
Sbjct: 230 GLPLDQTAEIQGNVPKESRRKWWKQKRIFFCTPQSFTNDVKEGIFKDAH--QIVCLIIDE 287
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A R + + +R + F + K I E
Sbjct: 288 AH--------------RARGNYAYCMAIQELKRYTNWFRIVALSATPGSKVEFI----QE 329
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVC-----GQFPQQDIDSFIPLNIIEEALNREPCPDP 314
I I AR DSDV + + P + I I
Sbjct: 330 IITNLQISHIEARTMDDSDVKKYMFERKEEIIKCPVSEEIKVIGNLIDRLLEKLLHRLAQ 389
Query: 315 YAPLIMG 321
Y + G
Sbjct: 390 YGVMQAG 396
>gi|310641564|ref|YP_003946322.1| gtp-binding signal recognition srp54 g [Paenibacillus polymyxa SC2]
gi|309246514|gb|ADO56081.1| GTP-binding signal recognition SRP54 G [Paenibacillus polymyxa SC2]
Length = 481
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 3/118 (2%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
S T PE Q++ + + E++ + + P + W+ F E
Sbjct: 204 SSMESTWPEALQEICEHVLEQEVERDLLEYWIEQVYVRRSEHPFAPET--FDWEQAFREE 261
Query: 62 VDAHCLNSVNNPNPEVFK-GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
V + ++ + K ++ G+GKTT A L + +++
Sbjct: 262 VTSFIQTRLDKGISQDTKIVYVAGPTGVGKTTTIAKLAAEQLFKHHRKVGFITSDTYR 319
>gi|118380585|ref|XP_001023456.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila]
gi|89305223|gb|EAS03211.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila SB210]
Length = 1858
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 11/122 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
++ G+GKT + A ++L P + LA + + + E L+
Sbjct: 154 TLVALPTGLGKTFIAATVILNYYLWFPKGKIFFLAPTRPLVNQQM--ECLSQFELINKND 211
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
FEM Y + + + + +T + + + +I DE
Sbjct: 212 IFEMT-------GNYPIPKRRDVYLRKRIFFCTPQTLENDLIE--QRYDGYNLSLVIFDE 262
Query: 200 AS 201
A
Sbjct: 263 AH 264
>gi|332969227|gb|EGK08257.1| DNA/RNA helicase [Desmospora sp. 8437]
Length = 788
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 47/346 (13%), Positives = 102/346 (29%), Gaps = 45/346 (13%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
G +E P Q E + +DA + + G+GKT ++A
Sbjct: 188 SDGRLVETVITPHEIQREALRSLDATMEEGYDRAM-------VVMATGLGKTYMSA---- 236
Query: 100 WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
+ ++ +A+ E L+ E L ++ +
Sbjct: 237 FFADQMKFGKILFIAHREEILR------------------QAEATFLGVNSSWRTGFFNG 278
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
D++ T S II DE ++G +
Sbjct: 279 SRKERDAEVLFASIHTLSMLHH--LSSFRPDEFDLIIVDEFHHAAAKSYRRVIGHF---H 333
Query: 220 ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
MT+ P RL G + ++ + + + P ++GI D D
Sbjct: 334 PRFLLGMTATPDRLDGGDIYVLCDNNLAFQMDFVQAIERKFLVPFRYQGIY----DDIDY 389
Query: 280 TRVEV-CGQFPQQD-IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
+++ G++ ++ ++I ++ ++ + L+ + + + +
Sbjct: 390 SQIRYADGRYNREQLDQAYIQESMAKKIHQKWMEFRQSRTLVFCSSV-RQAQFLSDYFNQ 448
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
+G L +K + + L E +D N G
Sbjct: 449 QGNKTVALHAGTKNRIEA----VRALREGRIEAIFTVDLFNEGVDI 490
>gi|297620908|ref|YP_003709045.1| hypothetical protein wcw_0671 [Waddlia chondrophila WSU 86-1044]
gi|297376209|gb|ADI38039.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
Length = 499
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 54/464 (11%), Positives = 106/464 (22%), Gaps = 93/464 (20%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNS 69
+ K + + SD + L W T P Q + + + +
Sbjct: 3 TQDVKEAEKLLSDPVWR------LSHLYWIIDKTGSLKLFKPNWAQEKLYQEM---WYCN 53
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
I R +G +T L L +A++ L+ V
Sbjct: 54 -----------LILKARQLGISTFIGLLFLDRCLFNSNQHAGIIAHTREDA-EILFRRVK 101
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
LP + + L + + + + T H
Sbjct: 102 FAYDHLPP---------EIKSLRRANTDNARELQLSNGSTLRVGTSMR---SSTLQYLH- 148
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD--- 246
++ + P+ I G L ++ + S G FYE+ +
Sbjct: 149 ---ISEFGKICAKYPEKAREIITGSLNAIAPGQYIFIESTAEGREGYFYEMCKEAQAAQD 205
Query: 247 --------DWKRFQIDT-------------------------------RTVEGIDPSFHE 267
D++ R++ +++
Sbjct: 206 SGKKLTSLDFRFHFFPWHGHQAYKIDSQTLELPSHMQRYFSRLEGILGRSLSPEQKAWYI 265
Query: 268 GIIARYGLD-SDVTRVEVCGQFPQQDIDSFIPLNIIE---EALNREPCPDPYAPLIMGCD 323
G D F + + I+E R D P+ D
Sbjct: 266 KRSETQGEDMKREFPSTPEEAFEVSNEGLYYGRQIVEARQHGRIRNVYYDANVPVHTAWD 325
Query: 324 IAEEGGDNTVVVLRRGP----VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN- 378
+ D+T + + + ++ S L + Y + DA
Sbjct: 326 LGY--NDSTAIWWYQVCGQEIHLLEYYENSGEPLTHYLQIVKSKPYVYGKHIVPHDAAVH 383
Query: 379 ---TGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVK 419
TG + G ++ RN
Sbjct: 384 EYSTGLSRVEVARNHGVSFTIAPKIDLIEGIDAVRNIFNRCWFN 427
>gi|254284934|ref|ZP_04959900.1| phage terminase large subunit (GpA) [Vibrio cholerae AM-19226]
gi|150424937|gb|EDN16714.1| phage terminase large subunit (GpA) [Vibrio cholerae AM-19226]
Length = 632
Score = 42.6 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 45/365 (12%), Positives = 90/365 (24%), Gaps = 40/365 (10%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P K G +GK+ ++ W + P +I + +E+ + + ++ +
Sbjct: 11 PTYSKITFVMGTQMGKSATMQNVIGWRLDDLPAP-IIYVGPTESNINNVVEPKIMEMFRE 69
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE-ERPDTFVGHHNTYGM 193
+ H L + + ++ + + D + G
Sbjct: 70 CQSLWIKYDDKSPKHKKRIGGVSLRFAWAGSATELASDSAVITLVDELDRPDANATGEGS 129
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
EA G D LG + + ++
Sbjct: 130 LSEIAEARG--DAYIDSKLGLTSTPTHGKASTFVHPETGVT----------------HWA 171
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD-IDSFIPLNIIEEALNREPCP 312
+ P + E TR E P D + FIP + E
Sbjct: 172 VAPKGKVSSPIWLEW--------EQGTRHEWAVPCPDPDCGEYFIPRS--------ELLW 215
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
P C A D ++ G IE G K D
Sbjct: 216 WPGKGTDKECSPAAASRDARLICPHCGGQIEDKHRKLMN--AQGVAIAPGQYAKRHDDHS 273
Query: 373 IIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH 432
++ + + ML L +++ ++ L+ +
Sbjct: 274 VLITQGDDSAVVPFHSMLHPLEDNNHFSIWVSGLCSFSGKKSYGYL-ARKLLQAQRSGDP 332
Query: 433 SGLIQ 437
+ L+
Sbjct: 333 NQLLS 337
>gi|307315429|ref|ZP_07594994.1| protein of unknown function DUF264 [Sinorhizobium meliloti BL225C]
gi|306898808|gb|EFN29464.1| protein of unknown function DUF264 [Sinorhizobium meliloti BL225C]
Length = 477
Score = 42.6 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 51/439 (11%), Positives = 100/439 (22%), Gaps = 53/439 (12%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL---------WL 101
P + Q EF A AG +GKT A W
Sbjct: 43 PYAKQREFHAAGAAFRERLFM------------AGNQLGKTLAGAAEAAMHLTGRYPDWW 90
Query: 102 MSTRPGISVICLA--NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
R ++ LA S + + + + ++ +
Sbjct: 91 QGRRFDRPIVMLAGSESYELTRDGVQRLLIGPPLNEEEWGTGFLPKAAIKATTRRAGASG 150
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ +H S T + + + + + DV GI R
Sbjct: 151 ALDSVTVRHVSGRASTLLFKAYEQGRAKWQANTVDYVWFDEEPPEDVYFEGITRTNATRG 210
Query: 220 ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
A + + R LS + D + E P + +I Y
Sbjct: 211 A--IAVTFTPLRGLSAVVARYLMEKSPDRAVITMTIEDAEHYTPQERQRVIDSYPAHERE 268
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
R P P+ E + I G D + V
Sbjct: 269 ARTR---GVPALGSGRIFPVT-EESIRIDPFEIPKHWVQIGGLDFGWDHPFAAVGCAWDR 324
Query: 340 ----PVIEHLFDWSKTDLRTTNNKISGLVEKY---RPDAIIIDANNTGARTCDYLEMLGY 392
+ ++ + + P + +G + G
Sbjct: 325 DADVFHVTKIYREREATPIIHAAALKPWGAAMPWAWPHDGLQHDKGSGEQLAAQYRAQGL 384
Query: 393 HVYRVL-------GQKRAVDLEFCRNRRTELHVKMA---DWLEFASLIN--HSGLIQNLK 440
+ A + + ++ + +W E L + +++
Sbjct: 385 ALLPERATFDDGTNGVEAGLSDMLQRMQSGRWKVFSTCTEWFEEFRLYHRKDGRIVKE-- 442
Query: 441 SLKSFIVPNTGELAIESKR 459
+ + A+ KR
Sbjct: 443 ---RDDLISASRYALMMKR 458
>gi|269124153|ref|YP_003306730.1| type III restriction protein res subunit [Streptobacillus
moniliformis DSM 12112]
gi|268315479|gb|ACZ01853.1| type III restriction protein res subunit [Streptobacillus
moniliformis DSM 12112]
Length = 751
Score = 42.6 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 37/277 (13%), Positives = 84/277 (30%), Gaps = 16/277 (5%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ L S + K + + G GKT + + + V +
Sbjct: 9 FQENAVDFLFSKTTDSNSKPKIVMQSPTGSGKTIILVAYIEKYLDFHRDSVVCWFCPGKG 68
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+L+ ++ ++ L + F++ + A Y D+ R
Sbjct: 69 ELEEQSKEKMERFAPTLKTGNVFDILNTGFESATTYFINWETITKKDNTAIRDSERK--- 125
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLG---ILGFLTERNANRFWIMTSNPR-RLS 234
+ HN I+ + ++ NA +++ P R+
Sbjct: 126 NLFERISEAHNRNLNFIVI-----IDEEHQNNTSKAEDIISSINAKYEIRVSATPNKRVV 180
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG---LDSDVTRVEVCGQFPQQ 291
G+FYEI + + +G+D + E I+ +D R ++ + +
Sbjct: 181 GEFYEIPEIDVINEGLTTRFMYINDGLDTAHVENILHETDILLEKADEVRKKISRAYIDE 240
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEG 328
D PL +++ + + + + E
Sbjct: 241 KED-IRPLVLVQFPNLNDDLIEHVEEKLNLMGYSYEN 276
>gi|169343347|ref|ZP_02864353.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
gi|169298524|gb|EDS80608.1| phage terminase, large subunit, pbsx family [Clostridium
perfringens C str. JGS1495]
Length = 415
Score = 42.6 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 38/306 (12%), Positives = 85/306 (27%), Gaps = 27/306 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ GRG K+T A +++ M P + + L K + + ++ + L H
Sbjct: 32 VKGGRGSKKSTTTAMWIIYNMMKYPLANTLVLRRVFNTHKDSTYTQLKWAANNLGVSHL- 90
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
W+ + + R + T + Y +EA
Sbjct: 91 -----------WHFSKSPLEITYKPTGQKILFRGLDDPMSITSITVEIGYLCWAWFEEAF 139
Query: 202 GTPDV-----INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
+ +++ I G L + + + F+ D+ + +
Sbjct: 140 QVMNEDDFNKVDMSIRGELPMGYFKQITLSFNPWSEKHWLKKRFFDTKDDNILALTTNYK 199
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
E + + + + ++E G++ D + N E + +
Sbjct: 200 CNEFLGDDDRKLFESMKENNPRRYKIEGLGEW--GIADGLVYENFTELEFDVKEISKRKG 257
Query: 317 PL-IMGCDIAEEGGDNTVVVLRRGPVIEHL-----FDWSKTDLRTTNNKISGLVEKYRPD 370
+ + G D + + L N I + Y +
Sbjct: 258 IISVFGLDFGYTNDPTAFICCLVDEKTKELFIFDEHYQKAMSNTDIVNMIK--YKGYSKE 315
Query: 371 AIIIDA 376
II D+
Sbjct: 316 KIIADS 321
>gi|163795352|ref|ZP_02189319.1| hypothetical protein BAL199_14577 [alpha proteobacterium BAL199]
gi|163798210|ref|ZP_02192143.1| hypothetical protein BAL199_30625 [alpha proteobacterium BAL199]
gi|163798301|ref|ZP_02192229.1| hypothetical protein BAL199_00065 [alpha proteobacterium BAL199]
gi|159176414|gb|EDP61001.1| hypothetical protein BAL199_00065 [alpha proteobacterium BAL199]
gi|159176504|gb|EDP61085.1| hypothetical protein BAL199_30625 [alpha proteobacterium BAL199]
gi|159179338|gb|EDP63869.1| hypothetical protein BAL199_14577 [alpha proteobacterium BAL199]
Length = 482
Score = 42.6 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 48/454 (10%), Positives = 108/454 (23%), Gaps = 42/454 (9%)
Query: 24 IKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAIS 83
+ +F L F G G +W ++ + + I+
Sbjct: 11 VLNAFLREDLSSFIARSFGVVAPGIDYHTNWHIDLLADRLTDVWEGRTK------RLIIN 64
Query: 84 AGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK-----WLSLLPNK 138
K+T + + M S I A+ L L + + W S +
Sbjct: 65 LPPRSLKSTAVSVAFVAWMLGHTPTSRIICASYGADLALKLARDCRRIMGSDWYSQAFPR 124
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMA 194
+ + S + + P D +
Sbjct: 125 TRMNPLKTAEGDFETTAGGYRLSSSLGGTLTGRGGMCLIVDDPIKPTDALSPVKRKAVIE 184
Query: 195 IIN-DEASGTPDVINLGILGFLTE---RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
S D + ++ + + + + + LS ++
Sbjct: 185 WFTGTLLSRLDDKTDGAVIVVMQRVHVDDLTGYLLEKAGWTLLSLPAIATEDEAFTLADG 244
Query: 251 FQIDTRTVEGIDPSFHE-GIIARYGLDSDVTRVEVC-GQFPQQDIDSFIPLNIIEE---- 304
+ R E +DP ++ R D E Q P + + I ++ +
Sbjct: 245 RIVGRRVGEPLDPRRESLEVLDRVRADMGSYHFEAQYQQAPVPERGNLIHMDWFQTYDTV 304
Query: 305 ALNREPCPDPYAPLIMGCDIAEEGGDNTVV--VLRRGPVIEHLFDWSKTDLRTTNNKISG 362
+ + + +R + D T ++
Sbjct: 305 PTGTAYDDSIVQSWDTAMTAHDGSDWSVGMTWAVRGTDYYLIDVHRERADFPTMKRRVVE 364
Query: 363 LVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD 422
L +++ D ++I+ +G L V + + E + T
Sbjct: 365 LKARFKADTVLIEEAGSGQALIQQLRS-DTDVRPIAIRPVGSKAERMGAQTTY------- 416
Query: 423 WLEFASL------INHSGLIQNLKSLKSFIVPNT 450
+E + L L + +
Sbjct: 417 -IEAGRVKLPTTAPWLDDLRSELAAFPFGRHDDQ 449
>gi|15965769|ref|NP_386122.1| DNA packaging protein GP2 [Sinorhizobium meliloti 1021]
gi|15075038|emb|CAC46595.1| DNA packaging protein GP2 [Sinorhizobium meliloti 1021]
Length = 477
Score = 42.6 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 51/439 (11%), Positives = 100/439 (22%), Gaps = 53/439 (12%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL---------WL 101
P + Q EF A AG +GKT A W
Sbjct: 43 PYAKQREFHAAGAAFRERLFM------------AGNQLGKTLAGAAEAAMHLTGRYPDWW 90
Query: 102 MSTRPGISVICLA--NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
R ++ LA S + + + + ++ +
Sbjct: 91 QGRRFDRPIVMLAGSESYELTRDGVQRLLIGPPLNEEEWGTGFLPKAAIKATTRRAGASG 150
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ +H S T + + + + + DV GI R
Sbjct: 151 ALDSVTVRHVSGRASTLLFKAYEQGRAKWQANTVDYVWFDEEPPEDVYFEGITRTNATRG 210
Query: 220 ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
A + + R LS + D + E P + +I Y
Sbjct: 211 A--IAVTFTPLRGLSAVVARYLMEKSPDRAVITMTIEDAEHYTPQERQRVIDSYPAHERE 268
Query: 280 TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG 339
R P P+ E + I G D + V
Sbjct: 269 ARTR---GVPALGSGRIFPVT-EESIRIDPFEIPKHWVQIGGLDFGWDHPFAAVGCAWDR 324
Query: 340 ----PVIEHLFDWSKTDLRTTNNKISGLVEKY---RPDAIIIDANNTGARTCDYLEMLGY 392
+ ++ + + P + +G + G
Sbjct: 325 DADVFHVTKIYREREATPIIHAAALKPWGAAMPWAWPHDGLQHDKGSGEQLAAQYRAQGL 384
Query: 393 HVYRVL-------GQKRAVDLEFCRNRRTELHVKMA---DWLEFASLIN--HSGLIQNLK 440
+ A + + ++ + +W E L + +++
Sbjct: 385 ALLPERATFDDGTNGVEAGLSDMLQRMQSGRWKVFSTCTEWFEEFRLYHRKDGRIVKE-- 442
Query: 441 SLKSFIVPNTGELAIESKR 459
+ + A+ KR
Sbjct: 443 ---RDDLISASRYALMMKR 458
>gi|253573539|ref|ZP_04850882.1| GTP-binding signal recognition particle SRP54 G [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251847067|gb|EES75072.1| GTP-binding signal recognition particle SRP54 G [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 472
Score = 42.2 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 11/112 (9%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLE---FMEVVDAHC 66
+Q+L E+ + V W G L Q + H
Sbjct: 215 SIQQQLMSQEVGPELADRWVEEVYEA--WLSSGKTLSD----DDMQARLRTIVNSFLDHR 268
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+++ + I+ G+GKTT A L + A++
Sbjct: 269 IDAGIGDQTRI--VYIAGPTGVGKTTTIAKLAADQIFRLHKKVGFITADTYR 318
>gi|240281429|gb|EER44932.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
capsulatus H143]
Length = 1999
Score = 42.2 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR-PGI 108
+E + A N ++F + + G GKT + A L +W PG
Sbjct: 1106 ILEDIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGS 1164
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1165 KVVYIAPMKALVRER----VQDWRRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPE 1220
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1221 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGSDRGPILEIIVSRMN 1265
>gi|83591582|ref|YP_425334.1| Type III restriction enzyme, res subunit [Rhodospirillum rubrum
ATCC 11170]
gi|83574496|gb|ABC21047.1| Type III restriction enzyme, res subunit [Rhodospirillum rubrum
ATCC 11170]
Length = 1014
Score = 42.2 bits (97), Expect = 0.18, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 15/137 (10%)
Query: 37 PWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
W + P G R W H + NPE+ + A+ G GKTT+ A
Sbjct: 140 IWLTEVAPKLGKKGERFW---------DHIKGANEQANPELLRLALKLATGAGKTTVMAM 190
Query: 97 LVLWL---MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPW 153
L+ W P + + L LPN ++ L PA
Sbjct: 191 LIAWQTVNAVRHPNSKTF-SRGFLLVAPGITIRDRLRVL--LPNDPESYYRNRELVPADM 247
Query: 154 YSDVLHCSLGIDSKHYS 170
+D + I + H
Sbjct: 248 LADTERAKIVITNYHAF 264
>gi|217971577|ref|YP_002356328.1| type III restriction protein res subunit [Shewanella baltica OS223]
gi|217496712|gb|ACK44905.1| type III restriction protein res subunit [Shewanella baltica OS223]
Length = 1055
Score = 42.2 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 16/149 (10%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFV----------LHFFPWGEKGTPLEGFSAP 51
++E+P E F+ W FS G + + P
Sbjct: 261 TQEIPHIIEKSLSTFETYWESNEFELFSGDASSKEKLNNALKEAKGSGTESSSFHFDIKP 320
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+ Q E +E + V FK I A G GKT ++A+ P + +
Sbjct: 321 FAHQREILEQLA------VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPDANFL 374
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+A+ + L+ L A + + W
Sbjct: 375 FVAHRQEILQQALSAYRGVLKNNQFGELW 403
>gi|152998912|ref|YP_001364593.1| type III restriction protein res subunit [Shewanella baltica OS185]
gi|151363530|gb|ABS06530.1| type III restriction protein res subunit [Shewanella baltica OS185]
Length = 1055
Score = 42.2 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 16/149 (10%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFV----------LHFFPWGEKGTPLEGFSAP 51
++E+P E F+ W FS G + + P
Sbjct: 261 TQEIPHIIEKSLSTFETYWESNEFELFSGDASSKEKLNNALKEAKGSGTESSSFHFDIKP 320
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+ Q E +E + V FK I A G GKT ++A+ P + +
Sbjct: 321 FAHQREILEQLA------VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPDANFL 374
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+A+ + L+ L A + + W
Sbjct: 375 FVAHRQEILQQALSAYRGVLKNNQFGELW 403
>gi|126172615|ref|YP_001048764.1| type III restriction enzyme, res subunit [Shewanella baltica OS155]
gi|125995820|gb|ABN59895.1| type III restriction enzyme, res subunit [Shewanella baltica OS155]
Length = 1055
Score = 42.2 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 16/149 (10%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFV----------LHFFPWGEKGTPLEGFSAP 51
++E+P E F+ W FS G + + P
Sbjct: 261 TQEIPHIIEKSLSTFETYWESNEFELFSGDASSKEKLNNALKEAKGSGTESSSFHFDIKP 320
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+ Q E +E + V FK I A G GKT ++A+ P + +
Sbjct: 321 FAHQREILEQLA------VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPDANFL 374
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+A+ + L+ L A + + W
Sbjct: 375 FVAHRQEILQQALSAYRGVLKNNQFGELW 403
>gi|261189015|ref|XP_002620920.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis SLH14081]
gi|239591924|gb|EEQ74505.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis SLH14081]
Length = 2024
Score = 42.2 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR-PGI 108
+E + A N ++F + + G GKT + A L +W PG
Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGS 1189
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1190 KVVYIAPMKALVRER----VHDWRRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPE 1245
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1246 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1290
>gi|255933656|ref|XP_002558207.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582826|emb|CAP81028.1| Pc12g14010 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 2009
Score = 42.2 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR-PGI 108
+E + N ++F + + G GKT + A L +W PG
Sbjct: 1132 ILEEIYGQRFQFFNPMQTQIFHLLYHTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGS 1190
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + + ++ + + + +
Sbjct: 1191 KVVYIAPMKALVRER----VQDWRKRLTRQMGLKLVELTGDNTPDTRTIRDADIIITTPE 1246
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1247 KWDGISRSWQTRDYVR-------KVSLVIIDEIHLLGGDRGPILEIIVSRMN 1291
>gi|326536951|ref|YP_004306358.1| DNA packaging protein B [Pseudomonas phage phiIBB-PF7A]
gi|318054527|gb|ADV35703.1| DNA packaging protein B [Pseudomonas phage phiIBB-PF7A]
Length = 588
Score = 42.2 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL-ANSETQLKTTLWAEVSKWLSLLP 136
+ + A RGIGK+ + V+W + P + ++ + AN + +++ + + + LLP
Sbjct: 51 RRFILQAFRGIGKSFITCAFVVWKLWNNPDLKIMIVSANKDRADANSVF--IKRIIDLLP 108
Query: 137 NKHWFEMQSL-SLHPAPWYSDVLHCSLGIDSKHYSTMC 173
H + ++ + K
Sbjct: 109 FLHELKPRAGQRDSSLSFDVGPARPDHSPSVKSVGVTG 146
>gi|239609198|gb|EEQ86185.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis ER-3]
Length = 2024
Score = 42.2 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR-PGI 108
+E + A N ++F + + G GKT + A L +W PG
Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGS 1189
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1190 KVVYIAPMKALVRER----VHDWRRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPE 1245
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1246 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1290
>gi|327355898|gb|EGE84755.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
dermatitidis ATCC 18188]
Length = 2024
Score = 42.2 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR-PGI 108
+E + A N ++F + + G GKT + A L +W PG
Sbjct: 1131 ILEEIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGS 1189
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1190 KVVYIAPMKALVRER----VHDWRRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPE 1245
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1246 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1290
>gi|166031465|ref|ZP_02234294.1| hypothetical protein DORFOR_01162 [Dorea formicigenerans ATCC
27755]
gi|166028870|gb|EDR47627.1| hypothetical protein DORFOR_01162 [Dorea formicigenerans ATCC
27755]
Length = 670
Score = 42.2 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 38/380 (10%), Positives = 98/380 (25%), Gaps = 36/380 (9%)
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
GRG K++ + ++ L+ + + + ++ +++ +V + L F+
Sbjct: 290 PGGRGSTKSSFVSLNIIDLIMKNSEMHAVVMRQVADTMRGSIYQQVKWAIDALGLSEEFD 349
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+P I + + S + P ++G + +
Sbjct: 350 ATV-----SPLEITRKSTGQKIYFRGADDPGKVKSIKVPFGYIGI------LWLEELDQF 398
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID-TRTVE-- 259
T I + + T NP + + + + K + +
Sbjct: 399 TGPESVRKIEQSVIRGGDVAYIFKTFNPPKSASNWANKYIKIPKATRLVTESTYLDIPQK 458
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ F + + D E G F + + + + +
Sbjct: 459 WLGKPFIDEAQFLKETNPDAYENEYLGVPNGSGGSVF---DNLVIRAITDEEIAQFDNIK 515
Query: 320 MGCDIAEEGGDNTVV-----VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
G D V R I + K + T ++ L D +
Sbjct: 516 NGVDWGFYPDKYAFVRVHYDAARLRLYIWQEYTCQKKRNKQTAEELIKLGI-TGNDLLTC 574
Query: 375 DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD-WLEFASLINHS 433
D+ ++ + G + D + + + + ++
Sbjct: 575 DSAE--NKSIEDYRAYGLFARPAN---KGPDSRTYSYKWLQ---SLREIIIDNVRCP--- 623
Query: 434 GLIQNLKSLKSFIVPNTGEL 453
+ + GE+
Sbjct: 624 -VAAQEFMEYEYERDKDGEV 642
>gi|254452480|ref|ZP_05065917.1| phage DNA Packaging Protein [Octadecabacter antarcticus 238]
gi|198266886|gb|EDY91156.1| phage DNA Packaging Protein [Octadecabacter antarcticus 238]
Length = 275
Score = 42.2 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 27/283 (9%), Positives = 65/283 (22%), Gaps = 44/283 (15%)
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD 278
+T+ P+ + + + T + +
Sbjct: 9 GKKPRACVTTTPKNVEILKDLMA---RKSTVQTHATTHANRAYLADSFLTEVQERYAGTR 65
Query: 279 VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDI---AEEGGDNTVVV 335
+ R E+ G + ++ A +++ D A D ++
Sbjct: 66 LGRQELEGVLLADVDGALWTSARLQAAHM--SKLPEMDRIVVAVDPPAGANATSDACGII 123
Query: 336 L----------RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCD 385
+ + ++++ D ++ + N GA
Sbjct: 124 VAGMVSQGPVSDWMIYVIEDASVQGVSPYEWAAAAIAAMDRHGADRMVAEVNQGGAMVET 183
Query: 386 YLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH--VKMADWLEFASLINHSGLIQNLKSLK 443
+ + V L+ ++ L L + Q + +
Sbjct: 184 IVRSIDPSVSYRAVHATR-GKAMHAEPVAALYEQGRVRHALGLGELE--DEMCQ--MTAQ 238
Query: 444 SFIVPNTGELAIESKRVKGAKSTDYSDGLMYT----FAENPPR 482
+ G S D D L++ F E R
Sbjct: 239 GYG---------------GTGSPDRVDALVWALTDLFLEPAKR 266
>gi|77463780|ref|YP_353284.1| Phage terminase-like protein large subunit [Rhodobacter sphaeroides
2.4.1]
gi|77388198|gb|ABA79383.1| Phage terminase-like protein large subunit [Rhodobacter sphaeroides
2.4.1]
Length = 551
Score = 42.2 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 47/345 (13%), Positives = 87/345 (25%), Gaps = 23/345 (6%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISA-GRGIGKTTLNAWLVLWLMS------TRPGISVICLA 114
+ V + + GRG KT L+A L L + +P ++ A
Sbjct: 72 LAEFQCRFVRGSMAPGVMVGVLSIGRGNAKTALSAGLALAELVGALHPKPQPKREILFAA 131
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI----DSKHYS 170
+ Q KT + + ++ LP + + L D K
Sbjct: 132 RNRDQAKTA-FQFLVGYIDGLPEEDRAGFTIRRGSKLEVEFEGNGGGLARVIAADGKSIL 190
Query: 171 TMCRTYS-EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
T + + + I + + N W+
Sbjct: 191 GGAPTLALMDERAAWEREKGDNLENAILSGLGKRDGRALIISTSAPDDANTFSRWLDEPP 250
Query: 230 PRRLSGKFYEIFNKPLDDWKRF---QIDTRTVEGIDPSFH----EGIIARYGLDSDVTRV 282
P + F P DD G P + IAR G R
Sbjct: 251 PGTYVQEHRPAFGLPADDLPSLLEANPGAAEGIGSTPEWLVAQARRAIARGGSALSSFRN 310
Query: 283 EVCGQFPQQDIDSFIPL--NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR-RG 339
+ + S + + + + P P ++G D+ +
Sbjct: 311 LNRNERVSTEDRSVLVTVDEWLSAEVAPDELPPRSGPCVLGVDLGGSRSMSAAAFYWPET 370
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+E L + + G+ ++Y + G T
Sbjct: 371 GRLEALGTFPASPSLADRGAADGVSDRYVQMEARGELTVMGDATV 415
>gi|221195393|ref|ZP_03568448.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
gi|221184580|gb|EEE16972.1| conserved hypothetical protein [Atopobium rimae ATCC 49626]
Length = 427
Score = 42.2 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 40/315 (12%), Positives = 83/315 (26%), Gaps = 22/315 (6%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
RG KTT + +M T+P +V L SE + ++ V K L ++ E+
Sbjct: 52 RGSYKTTSLEVALWVIMLTQPDKTVGFLRKSEADVSEV-FSAVEKMLRADVTQYIAEIIY 110
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
S + + Y + + D+ D
Sbjct: 111 GRPVRVTTASSTELSCDIACNVSGVSQVSGYGIGGS-----LTGKHWDIVCTDDIVTVRD 165
Query: 206 VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK------RFQIDTRTVE 259
+ + + N + G+ D +
Sbjct: 166 RYSRAER-----ERTKQVYRELQNVKNRGGRIVNTGTPWHKDDAFQLMPEPVRWPWDKTG 220
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
+ E + + + + ++ F + ++E D +
Sbjct: 221 LVTQEEAETLKKQM--THSLFAANYELRHVAEEGAVF--EGECQSFTDKELLYDGLMHVD 276
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNT 379
++G T + R H + +T + +I L + R + ++ N
Sbjct: 277 AAYG-GKDGTAITCIQWRDSEPYVHGELYRETHVDKCMARILELHRELRLGTVYMEKNAD 335
Query: 380 GARTCDYLEMLGYHV 394
D LE V
Sbjct: 336 KGYVADKLEGYRLPV 350
>gi|242815191|ref|XP_002486521.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714860|gb|EED14283.1| DEAD/DEAH box helicase, putative [Talaromyces stipitatus ATCC 10500]
Length = 2030
Score = 42.2 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMST-RPGI 108
+E + N ++F + + G GKT + L +W RPG
Sbjct: 1130 ILEEIYGQRFQFFNPMQTQLFHTLYHTSANVLLGSPTGSGKT-VACELAMWWAFRERPGS 1188
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1189 KVVYIAPMKALVRER----VQDWRKRLTAAMGLKLVELTGDNTPDTRTIRDADIIITTPE 1244
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1245 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1289
>gi|149198974|ref|ZP_01876015.1| hypothetical protein LNTAR_19957 [Lentisphaera araneosa HTCC2155]
gi|149137969|gb|EDM26381.1| hypothetical protein LNTAR_19957 [Lentisphaera araneosa HTCC2155]
Length = 882
Score = 42.2 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 25/197 (12%), Positives = 58/197 (29%), Gaps = 20/197 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q ++ ++ H + K I A G GKTTL + + + +
Sbjct: 14 RPYQQRVLDALEEHLDDK---------KLHIVAAPGAGKTTLGI-----EVFRKLEKNAL 59
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL---SLHPAPWYSDVLHCSLGIDSKH 168
L+ + ++ + + + W S + + + +
Sbjct: 60 VLSPT-RIIRDQWLNRLEDFCDFSMDLPWLSRSLDELASFNSVTYQALYSKLRGAGEEGS 118
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGM-AIINDEASGTPDVINLGILGFL-TERNANRFWIM 226
+E FV + + A+I DEA + + + + +
Sbjct: 119 EVDGAIKLTETAVKDFVDLLEKHKIGALILDEAHHLRSEWYKVLDELMQLKEDLTIVSLT 178
Query: 227 TSNPRRLSGKFYEIFNK 243
+ P G + +
Sbjct: 179 ATPPYDSKGHEWIRYES 195
>gi|108762724|ref|YP_635377.1| CRISPR-associated helicase Cas3 [Myxococcus xanthus DK 1622]
gi|108466604|gb|ABF91789.1| CRISPR-associated helicase Cas3 [Myxococcus xanthus DK 1622]
Length = 746
Score = 42.2 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 37/334 (11%), Positives = 69/334 (20%), Gaps = 38/334 (11%)
Query: 56 LEFMEVVDAHCLNS-------VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
E + V L + AG G GKT A LW PG
Sbjct: 254 AEALRAVVERRLAGHTPRPFQEEVARSAAPLTLVRAGCGSGKT---AAAYLWAARQHPGR 310
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS-- 166
+ + + +H + + S D
Sbjct: 311 PLWLTYPTMGTATEGFRDYLHGADVEARLQHSRAEVDFDIFGLRDGAAPGTSSRDQDRLD 370
Query: 167 --KHYSTMCRTYSEERPDTFVGHHNTYGMAI--------INDEASGTPDVINLGILGFL- 215
+ + + + + V A + DE D + +L FL
Sbjct: 371 ALRSWGADAMSCTADTVLGLVQSQRQGLYAWPGLCAACVVFDEVHAYDDRLFGCLLRFLE 430
Query: 216 TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGL 275
+ S P + + +E + + +
Sbjct: 431 ALPGIPALLMTASLPATRLDVLRGMCERVHGRSLAEVEGPEDLETLPRYQRLDVAEPWA- 489
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVV 335
+ + + N ++ + + + D V
Sbjct: 490 --------LVAECLRDHGKVLWVSNTVDRCMRTAEAGTSHGARALLYHSRFRYEDR---V 538
Query: 336 LRRGPVIEHLFDWSK---TDLRTTNNKISGLVEK 366
R G VIE + L
Sbjct: 539 RRHGDVIEAFATEGRAAFASTTQVAEMSLDLSAD 572
>gi|305665667|ref|YP_003861954.1| hypothetical protein FB2170_05195 [Maribacter sp. HTCC2170]
gi|88710424|gb|EAR02656.1| hypothetical protein FB2170_05195 [Maribacter sp. HTCC2170]
Length = 878
Score = 42.2 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 25/202 (12%), Positives = 52/202 (25%), Gaps = 39/202 (19%)
Query: 33 LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT 92
FPW R +Q +F+ H L++ + A G GKT
Sbjct: 9 KFKFPW-------------RKYQEQFLRHFAEHVLDNH---------LHVIAPPGSGKTL 46
Query: 93 LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP 152
L ++ + G + L+ + ++W L +
Sbjct: 47 LGIEIL-----RQIGKKTLVLSPTL--------TIRNQWEDRL----QQYFTTGRPFVNT 89
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
+ + + + D + I+ DEA + +
Sbjct: 90 SFDINEPRDITFSTYQGLHAFFKKQNDVQDFLEHFKSKGIKTIVLDEAHHLKNEWWKCLF 149
Query: 213 GFLTERNANRFWIMTSNPRRLS 234
++ + + P S
Sbjct: 150 ALKEDQGLTIVALTATPPFDSS 171
>gi|302894383|ref|XP_003046072.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726999|gb|EEU40359.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1970
Score = 42.2 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKW-L 132
+ + G GKT + A L +W RP V+ +A + ++ V W
Sbjct: 1149 HTPANVLLGSPTGSGKT-VAAELAMWWAFRERPKSKVVYIAPMKALVRER----VKDWGA 1203
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L ++ + + + + + + R++
Sbjct: 1204 RLARPLGLKLVELTGDNTPDTRTIQDADVIITTPEKWDGISRSWQTRGYVR-------QV 1256
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1257 SLVIIDEIHLLAGDRGPILEIIVSRMN 1283
>gi|88861280|ref|ZP_01135912.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2]
gi|88816761|gb|EAR26584.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2]
Length = 721
Score = 42.2 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 58/411 (14%), Positives = 118/411 (28%), Gaps = 61/411 (14%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E ++ ++ ++V P + + AG G GKT + + WLM A +
Sbjct: 5 ELLDGLNDKQRDAVAAPLQNML---VLAGAGSGKTRVLVHRIAWLMQVENASPYSIFAVT 61
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
T NK EM+S + + H
Sbjct: 62 FT------------------NKAAKEMRSRVEETLKTSAGGMWIGTFHGLAHRILRAHHR 103
Query: 177 SEERPDTFVGHHNTYGMAII-------NDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
P+ F + + +I N + P + + I
Sbjct: 104 EAHLPEAFQILDSDDQIRMIRRLLKAMNIDEKKWPPKQISWYISAKKDEALRPKDIK--- 160
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+ L+ + +Q +D + +S +FP
Sbjct: 161 ------AYDVNEQMFLNVYTAYQDACDRAGLVDFAEILLRCYELLKNSPTLLRHYQQRFP 214
Query: 290 QQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS 349
+D F N I+ A + +I+G D+ + RG IE++ +
Sbjct: 215 HMLVDEFQDTNTIQYAWLKLIAGTGGNVMIVG-------DDDQSIYGWRGAKIENIRRF- 266
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
L + + L + YR + I+ A + E +G ++ + + +
Sbjct: 267 ---LTDFDAQTIRLEQNYRSTSTIL--TAANALIANNSERMGKSLWTEGSEGDPISIYAA 321
Query: 410 RNRRTEL---HVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
N E K+ WL + + + ++ + + E+
Sbjct: 322 YNELDEARFIVGKIKTWLNAGNALQDAAIL--------YRNNAQSRILEEA 364
>gi|255974945|ref|ZP_05425531.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|307285453|ref|ZP_07565592.1| hypothetical protein HMPREF9515_02836 [Enterococcus faecalis
TX0860]
gi|255967817|gb|EET98439.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|306502677|gb|EFM71942.1| hypothetical protein HMPREF9515_02836 [Enterococcus faecalis
TX0860]
Length = 546
Score = 42.2 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 56/388 (14%), Positives = 105/388 (27%), Gaps = 48/388 (12%)
Query: 16 FDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
DL +++ ++ F +FFP +Q V + N
Sbjct: 40 DDLYIDEKMLENYIKFSEKYFFPLSI-------------YQKFIATFVFMYWKN---KDR 83
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI---CLANSETQLKTTLWAEVSKW 131
+ ++ GRG GK + L + +S GI ANSE Q K + EV
Sbjct: 84 VVFREFLVTLGRGGGKNGFLSTLGAFFISELHGIRGYNSTITANSEDQAK-MSFDEVYNV 142
Query: 132 LSLLPNKHWFEMQSLSLHPAP-------WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ K F + + ++ D + + P
Sbjct: 143 ILSRNLKKHFNAKKSVITGKAMAAEFKFRTNNPKTMDSARDGCLFFDEIHGFINNSPVKV 202
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP 244
G+ + + GF ++ I+T R+ +
Sbjct: 203 Q----RSGLGKVKHARTWYFGTNGYVREGFYDKQIERSMKILTGKTDRIGYFPFICKLDS 258
Query: 245 LDDWKRFQIDTRTVEGIDP--SFHEGIIARYGLD------SDVTRVEVCGQFPQQDI--- 293
+D+ + + + + E I D R E +
Sbjct: 259 IDELNDMNMWAKANPMFNEKTEYAEQIFEEVKEDYLDLEEEPSGRQEFVIKRMNFTEGND 318
Query: 294 --DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG-PVIEHLFDWSK 350
D P ++ A N+E + G D A ++ +L + L
Sbjct: 319 ERDVTTPEKLL--ATNQEIPELKGMSCVAGFDYASISDFASIGLLFKKEDKYIWLSHSFV 376
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANN 378
K+ VE++ I +
Sbjct: 377 RKGFLEKVKVKAPVEEWEEQGFITIVDG 404
>gi|185178777|ref|ZP_02964578.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 5 str.
ATCC 27817]
gi|184209393|gb|EDU06436.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 5 str.
ATCC 27817]
Length = 470
Score = 42.2 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 17/159 (10%), Positives = 46/159 (28%), Gaps = 16/159 (10%)
Query: 54 WQLEFMEVVDAH-CLNSVNNPNPEVFKGAIS------AGRGIGKTTLNAWLVLWLMSTRP 106
+Q ++ + + + A G GKT A +L +
Sbjct: 8 YQKWILDSLADQKIFEPTPIQTKAIPLISKKENVIGIAPTGTGKTLAFALPILNNLDLSQ 67
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ I +A + ++ +++++ + P L + + +
Sbjct: 68 KLQAIIIAPTRELVRQI-FSKIALFKKQQPL--------LQIKMLIGGESIDKQINSQLN 118
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
K + + ++ + ++ DEA D
Sbjct: 119 KAHIIVATPTRLKQVLSSQVLDLRSINTLVFDEADMLMD 157
>gi|171920644|ref|ZP_02931883.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 13 str.
ATCC 33698]
gi|188024390|ref|ZP_02997054.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 7 str.
ATCC 27819]
gi|188518412|ref|ZP_03003908.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar
11 str. ATCC 33695]
gi|188524231|ref|ZP_03004285.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 12 str.
ATCC 33696]
gi|195867393|ref|ZP_03079397.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 9 str.
ATCC 33175]
gi|198273326|ref|ZP_03205862.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 4 str.
ATCC 27816]
gi|209554212|ref|YP_002285037.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 10 str.
ATCC 33699]
gi|225550559|ref|ZP_03771508.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 2 str.
ATCC 27814]
gi|225551102|ref|ZP_03772048.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 8 str.
ATCC 27618]
gi|171903372|gb|EDT49661.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 13 str.
ATCC 33698]
gi|188018658|gb|EDU56698.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 7 str.
ATCC 27819]
gi|188998157|gb|EDU67254.1| superfamily II DNA and RNA helicase [Ureaplasma urealyticum serovar
11 str. ATCC 33695]
gi|195660020|gb|EDX53400.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 12 str.
ATCC 33696]
gi|195660869|gb|EDX54122.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 9 str.
ATCC 33175]
gi|198249846|gb|EDY74626.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 4 str.
ATCC 27816]
gi|209541713|gb|ACI59942.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 10 str.
ATCC 33699]
gi|225378917|gb|EEH01282.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 8 str.
ATCC 27618]
gi|225379713|gb|EEH02075.1| ATP-dependent RNA helicase [Ureaplasma urealyticum serovar 2 str.
ATCC 27814]
Length = 445
Score = 42.2 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 17/159 (10%), Positives = 46/159 (28%), Gaps = 16/159 (10%)
Query: 54 WQLEFMEVVDAH-CLNSVNNPNPEVFKGAIS------AGRGIGKTTLNAWLVLWLMSTRP 106
+Q ++ + + + A G GKT A +L +
Sbjct: 8 YQKWILDSLADQKIFEPTPIQTKAIPLISKKENVIGIAPTGTGKTLAFALPILNNLDLSQ 67
Query: 107 GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
+ I +A + ++ +++++ + P L + + +
Sbjct: 68 KLQAIIIAPTRELVRQI-FSKIALFKKQQPL--------LQIKMLIGGESIDKQINSQLN 118
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
K + + ++ + ++ DEA D
Sbjct: 119 KAHIIVATPTRLKQVLSSQVLDLRSINTLVFDEADMLMD 157
>gi|212545286|ref|XP_002152797.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
gi|210065766|gb|EEA19860.1| DEAD/DEAH box helicase, putative [Penicillium marneffei ATCC 18224]
Length = 2022
Score = 42.2 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 51/175 (29%), Gaps = 22/175 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMST-R 105
Q +E + N ++F + + G GKT + L +W R
Sbjct: 1125 QNPILEEIYGQRFQFFNPMQTQLFHTLYHTSANVLLGSPTGSGKT-VACELAMWWAFRER 1183
Query: 106 PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGI 164
PG V+ +A + ++ V W + + ++ + + +
Sbjct: 1184 PGSKVVYIAPMKALVRER----VQDWRKRITTAMGLKLVELTGDNTPDTRTIRDADIIIT 1239
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + + R++ +I DE + ++ N
Sbjct: 1240 TPEKWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1287
>gi|188589030|ref|YP_001921500.1| putative phage terminase, large subunit [Clostridium botulinum E3
str. Alaska E43]
gi|188499311|gb|ACD52447.1| putative phage terminase, large subunit [Clostridium botulinum E3
str. Alaska E43]
Length = 551
Score = 42.2 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 41/334 (12%), Positives = 94/334 (28%), Gaps = 31/334 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS--- 109
W+ + AHC ++ I GRG GK + + + + GI
Sbjct: 68 PWEKFIIG--LAHCY--YDDDTLVFDTFIIYMGRGGGKNGFISSISWYFTTKFHGIKEYN 123
Query: 110 VICLANSETQLKTT---LWAEVSKWLSLLPNKHWFEM----QSLSLHPAPWYSDVLHCSL 162
+ +ANSE Q KT+ ++ + L + ++ + + S+
Sbjct: 124 IDIVANSEDQAKTSFDDVYNVIEDNKKLSKAFYNTKVKIVYKKTRSYLKYNTSNARTKDG 183
Query: 163 GIDSKHYSTMCRTY-SEERPDTFVGHHNTY---GMAIINDEA---SGTPDVINLGILGFL 215
+ Y + + F +I+ + G D L
Sbjct: 184 LRPACIIFDEIHEYENYDNIKVFKSALGKKKHCRTFMISTDGYVRGGVLDDYLEISKSIL 243
Query: 216 TERN--ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARY 273
N + ++ + +++ K ++ + ++ + + +
Sbjct: 244 NGENKSSRMMPLLYHLEDKKEVDNRDMWEKANPSFRYLK----NLQVVMDQEYIDMQTNV 299
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
L + + I A N+E A +G D A+
Sbjct: 300 QLYT-EFMTKRMNMPEGNKDREVTSWENI-LATNQEIPDLKGATCRIGIDYAKTTDFVCA 357
Query: 334 -VVLRRGPVIEHL-FDWSKTDLRTTNNKISGLVE 365
++ + + W + + + L E
Sbjct: 358 GLLFKYKEKYVWISHTWVCRNSKDLKRIKAPLEE 391
>gi|242020386|ref|XP_002430636.1| activating signal cointegrator 1 complex subunit 3, helc1, putative
[Pediculus humanus corporis]
gi|212515808|gb|EEB17898.1| activating signal cointegrator 1 complex subunit 3, helc1, putative
[Pediculus humanus corporis]
Length = 2141
Score = 42.2 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 41/140 (29%), Gaps = 10/140 (7%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + + PG V+ +A + ++ + + L K
Sbjct: 1315 VLLGAPTGSGKTVVAEIAMFRVFRVYPGAKVVYIAPLKALVRERMEDWKIRLEKNLKRK- 1373
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
++ + + + + + R++ II DE
Sbjct: 1374 --VVELTGDVSPDVKAINAADVIVTTPEKWDGISRSWQTRNYVR-------KVALIIIDE 1424
Query: 200 ASGTPDVINLGILGFLTERN 219
+ + ++ N
Sbjct: 1425 IHLLGEDRGPVLEVIVSRTN 1444
>gi|241894907|ref|ZP_04782203.1| terminase large subunit [Weissella paramesenteroides ATCC 33313]
gi|241871915|gb|EER75666.1| terminase large subunit [Weissella paramesenteroides ATCC 33313]
Length = 604
Score = 42.2 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 42/380 (11%), Positives = 95/380 (25%), Gaps = 36/380 (9%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGIS 109
+ WQ + + + GR GKTT+ + L +++ G
Sbjct: 113 QPWQHFVLGNIFGWVDKETGLRRFNEGLIFV--GRKNGKTTIQSGLAIYMAGFDGENGAE 170
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL--GIDSK 167
V LAN + Q + ++ + K F+ + SL SK
Sbjct: 171 VYALANMKAQAGRLVDETIAMIDASEFLKKRFKTTKSMHKVEHQRTHSTILSLSAEKHSK 230
Query: 168 HYSTMCRTYSEERPD-----------TFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
+E + +G I+ + +
Sbjct: 231 DGFNTSFAVFDEIHEYKDYELIEVMRRSMGQRMQPLTVYISTAGTVLDGPMTDFFRSGKE 290
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
+ + L+ + W + + ++G+ + R
Sbjct: 291 TLEQYDENLNERSFYYLAKIDDVKEADNPEMWIKANPNLPMMDGLSLLSNYKKDMRTPQQ 350
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLIMGCDIAEEGGDNTV- 333
+ F + S + I + E P + G D+++
Sbjct: 351 RRDWITKQFNLFSESGEQSLLDAETILANNDEIDESELAGIHP-VAGFDLSDTEDFTAAA 409
Query: 334 ---------VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTC 384
+ +++ I + + N+ E +D
Sbjct: 410 LEFPLPDGRIFIKQHTWIPQARYDREEQYKERFNEWIEADEMTVLPGEHVDH----GAVY 465
Query: 385 DYLEMLG--YHVYRVLGQKR 402
D+L + Y + ++
Sbjct: 466 DWLIEMDKQYTIRQINYDPA 485
>gi|148753573|ref|NP_944422.2| DNA packaging terminase subunit 1 [Psittacid herpesvirus 1]
Length = 795
Score = 42.2 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 28/202 (13%), Positives = 56/202 (27%), Gaps = 18/202 (8%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ V L S + + ++ R GKT L+ L+S G+ + A+
Sbjct: 292 LAEVFNTPLFSSPALHHFKQRTSVFLVPRRHGKTWFLVPLISLLVSCFEGLRIGYTAH-L 350
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
+ ++ E+ + +H + G S
Sbjct: 351 RKATKPVFEEIY-------ARLCRWYGEDRVHQIKGETIAFSFKNGARSSIVFA------ 397
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN-PRRLSGK 236
G + DEA+ I+GFL + N F++ ++N + +
Sbjct: 398 --SSQNTNGLRGQDFNFLFVDEANFIKPGAMHTIMGFLNQTNCKLFFVSSTNTGQSSTSL 455
Query: 237 FYEIFNKPLDDWKRFQIDTRTV 258
Y +
Sbjct: 456 LYNLKGSSNSLLNVVTYICDDH 477
>gi|313895751|ref|ZP_07829307.1| putative phage terminase, large subunit [Selenomonas sp. oral taxon
137 str. F0430]
gi|312975877|gb|EFR41336.1| putative phage terminase, large subunit [Selenomonas sp. oral taxon
137 str. F0430]
Length = 533
Score = 42.2 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 32/298 (10%), Positives = 78/298 (26%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + + GK+ L A + L L V
Sbjct: 50 DWQERIIRDIFGILKPNGYR---QFNTAYVEIPKKQGKSELAAAIALLLCCGDGEERAEV 106
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q + ++ + + + P ++ + ++ + L ++
Sbjct: 107 YGCAADRQQA-SIVFEVAADMVRMCPALSKRVKILASQKRMVYLPTNSFYQVLSAEA--- 162
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
++ F H + + G+ D + +T + I
Sbjct: 163 -YSKHGFNIHGV-VFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTQSICYET 220
Query: 230 PRRLSGKFYE-----------IFNKPLDDWKRFQIDTRTVE------GIDPSFHE-GIIA 271
++ K +DW ++ R+ GID
Sbjct: 221 HQKAKDILEGRKIDPTFYPVIYGAKEDEDWTDPEVWKRSNPSLGITVGIDKVQAACDSAR 280
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + + R Q+ +Q + A+ + G D++
Sbjct: 281 QNPAEENSFRQLRLNQWVKQSVRWMPMDKWDACAIPVDAESLEGRVCYGGLDLSSTMD 338
>gi|269986940|gb|EEZ93216.1| type III restriction protein res subunit [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 508
Score = 42.2 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 25/217 (11%), Positives = 59/217 (27%), Gaps = 14/217 (6%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119
E ++ + + + G+GKT ++A L + + P V+ LA ++
Sbjct: 6 EEIENREYQTKIFETAKTGNTLVVLPTGLGKTIISAMLANYRLEKYPSSKVLFLAPTKPL 65
Query: 120 LKT--TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
++ + + + ++ ++ D + +S
Sbjct: 66 ANQHYRTFSSLLSLKQGMASGSVSSSSRGKIYEDAQIIFATPQTIENDMEKKVIDFSDFS 125
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
D HH + + + + +LG ++R I T +
Sbjct: 126 LLIVD--EAHHAIGNYSYVKIAKLYSEQSFHPLLLGLTASPASDREKIKTI---CSNLHI 180
Query: 238 YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
+ + DD I I
Sbjct: 181 ANVEIRSDDDQDVI-------PYIQKKEINEIKVDLP 210
>gi|320582067|gb|EFW96285.1| hypothetical protein HPODL_1942 [Pichia angusta DL-1]
Length = 2061
Score = 42.2 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 8/154 (5%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
++ F + + ++ W + V + ++ +
Sbjct: 1901 HPQLTYDFLSGFFDTLDYCQEQEQDAYVIYTSPWIKNIFKHVYSADSIKGPRRTSDLIRK 1960
Query: 81 AISAGRGIGKTTLNAWLV-LWLMSTRPGISV------ICLANSETQLKTTLWAEVSKWLS 133
+ A R K+T A+ + +W V I A + + + W E++K+
Sbjct: 1961 FVRASRKS-KSTTLAFALYIWGELCLEDRLVEIVIDEIISAAIDHEAEGHGWEEITKYWP 2019
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
L P + L ++ + L +
Sbjct: 2020 LTPTVEICGLLIHRLRERSYFINNDESELDFLKE 2053
>gi|312900430|ref|ZP_07759739.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0470]
gi|311292452|gb|EFQ71008.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0470]
Length = 451
Score = 42.2 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 36/312 (11%), Positives = 73/312 (23%), Gaps = 43/312 (13%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
+ + GRG GK+ ++ + P +S + + + + +++A + +
Sbjct: 30 LRYVLKGGRGSGKSFHIPMRIMLDIMEYP-VSALGVRKVQNTILKSVYANFKGAANAMGV 88
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+H F + D + E+ + + I
Sbjct: 89 RHLFR-----------FVDSKLEITYRPRGNKIYFAGADDPEKIKSIKDADFPLAIMWIE 137
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL---SGKFYEIFNKPLDDWKR---- 250
+ A + I + + S + + FY +N P
Sbjct: 138 ELAEFKTEDEVTTIENSVLREELEGKIVNESKRKNVYPFDYSFYYSYNPPKRRQSWVNKK 197
Query: 251 ------------FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
+ F E R E G+ +P
Sbjct: 198 YESSFIDNNTYVHHSTYLGNHHLSKKFIEEAENVKANKPLKYRWEYLGEAIGSG---VVP 254
Query: 299 LN--IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRR------GPVIEHLFDWSK 350
IE+ + + + G D D V G K
Sbjct: 255 FGNLKIEKGCITDEMVANFDNIRNGLDFG-YATDPLAFVRWHYDKKKNGIYAIDEIYGVK 313
Query: 351 TDLRTTNNKISG 362
R K+
Sbjct: 314 ISNRELAKKVRA 325
>gi|325092077|gb|EGC45387.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
capsulatus H88]
Length = 2017
Score = 42.2 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR-PGI 108
+E + A N ++F + + G GKT + A L +W PG
Sbjct: 1133 ILEDIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGS 1191
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1192 KVVYIAPMKALVRER----VQDWRRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPE 1247
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1248 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1292
>gi|285016934|ref|YP_003374645.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73]
gi|283472152|emb|CBA14659.1| probable atp-dependent dna helicase protein [Xanthomonas
albilineans]
Length = 733
Score = 42.2 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 51/386 (13%), Positives = 98/386 (25%), Gaps = 49/386 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL A
Sbjct: 14 QREAVSAPPGHYL--------------VLAGAGSGKTRVLTHRIAWLHEVHGVPVHGMFA 59
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 60 VTFT---NKAAGEM---------RHRADLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 107
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASG-TPDVINLGILGFLTERNANRFWIMTSNPRRL 233
S + D + + G P + + I
Sbjct: 108 PESFQVLDADDQLRLVKRVVQQLELDEGKFPPKQIAWWINQQKDEGRRAQHIQPEPHDVW 167
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + +D + D+ +F + +
Sbjct: 168 INTLRNAYALYQER-------CDRAGLVDFAELLLRAHELLRDTPALLAYYRARFAEILV 220
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R D ++G D+ + RG +E++ + K
Sbjct: 221 DEFQDTNAIQYAFVRVLAGDSGRVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 271
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
I I+ N A + +G ++ G +DL N
Sbjct: 272 FPGAQTIRLEQNYRSSANIL---NAANAVIAHNPDRIGKQLWTDSGDGEPIDLYAAYNEV 328
Query: 414 TELHV---KMADWLEFASLINHSGLI 436
E + W+ + + ++
Sbjct: 329 DEARYVLERARQWVRDGGSYSEAAVL 354
>gi|284801430|ref|YP_003413295.1| type III restriction enzyme [Listeria monocytogenes 08-5578]
gi|284994572|ref|YP_003416340.1| type III restriction enzyme [Listeria monocytogenes 08-5923]
gi|284056992|gb|ADB67933.1| type III restriction enzyme [Listeria monocytogenes 08-5578]
gi|284060039|gb|ADB70978.1| type III restriction enzyme [Listeria monocytogenes 08-5923]
Length = 925
Score = 42.2 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 31/217 (14%), Positives = 63/217 (29%), Gaps = 18/217 (8%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q E M +P +F A G GKT L A L+L+L + +
Sbjct: 49 RDYQDEAMRNYHYTQTQINPSPQHVLFNMAT----GSGKTDLMAGLILYLYQEHKYQNFL 104
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
N+ + L T V++ + E++ ++ S+
Sbjct: 105 FTVNTNSVLMKTKDNLVNENNDKYLFQEKIEIEGQRIYIRQVERFPCVRQNNTIYIKLSS 164
Query: 172 MCRTYSEERP--DTFVGH--HNTYGMAIINDEASGTP----------DVINLGILGFLTE 217
+ + + + +G + + + ++ DEA + I L
Sbjct: 165 VQKLSDDLFVLKENTMGLSDYENHPVVVLADEAHHYSASTKSEKEAENTWESAINKILRA 224
Query: 218 RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
R+ + E D ++
Sbjct: 225 RDNEEQKNLLLEFTATVDFDKEAIYNKYRDKVVYRYP 261
>gi|224004514|ref|XP_002295908.1| RNA or DNA helicase [Thalassiosira pseudonana CCMP1335]
gi|209585940|gb|ACI64625.1| RNA or DNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 2088
Score = 41.8 bits (96), Expect = 0.24, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL--LPN 137
+ A G GK+ + ++ ++ P + +A E + S W +
Sbjct: 1268 CLVCAPSGSGKSACAEFAIMRMLVNDPNGKCVYIAPKE----EIAFNTFSDWKTRFGSIL 1323
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
+ +Q + +K + + R + + +
Sbjct: 1324 RGGQVVQLTGEVTPDLKFIAEARIIVCTAKQWDAISRRWRQRKA 1367
>gi|319642230|ref|ZP_07996889.1| terminase large subunit [Bacteroides sp. 3_1_40A]
gi|317386086|gb|EFV67006.1| terminase large subunit [Bacteroides sp. 3_1_40A]
Length = 482
Score = 41.8 bits (96), Expect = 0.24, Method: Composition-based stats.
Identities = 46/345 (13%), Positives = 103/345 (29%), Gaps = 19/345 (5%)
Query: 58 FMEVVDAHCLNSVNNPNP-EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI--CLA 114
F++ V + + + +++ A+S GK+ +++ + W++ P SV+ C +
Sbjct: 48 FLKKVAEAFMRVYESYSAGIIYRLAVSMPPRAGKSYISSLFIAWMLGHFPEESVMRNCCS 107
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH------CSLGIDSKH 168
++ + ++ K ++ + W + +G
Sbjct: 108 DTLYNKLSYDARDIVKSKRFHEIFPDIYLKGDKQNVKSWNVEGARQVSYFGGGVGGTVIG 167
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ +++ + + + GT D G L +
Sbjct: 168 FGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHDSRIEG-NCCLIDIGTRWSANDVL 226
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
+GK+ EI D V + + R D + E +
Sbjct: 227 GRLEEAGKYNEIIRIAALDENERSF-CEDVHTTE----YYLELRSETDESIWMAEYMQEP 281
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV--VVLRRGPVIEHLF 346
+ F +++ L P +I CD A++G D+ G
Sbjct: 282 FEAKGLLFPKSSLMRFKLADIAGKRPDG-VIGACDTADKGDDDFCAPFAKVFGQKYFITD 340
Query: 347 DWSKTDLRTTNN-KISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
D ++ +V D + I++NN G + L
Sbjct: 341 VLFTKDPVEVTEPHLAQMVIDTECDQLRIESNNGGRIFAINVRKL 385
>gi|237794637|ref|YP_002862189.1| putative phage terminase, large subunit [Clostridium botulinum Ba4
str. 657]
gi|229260548|gb|ACQ51581.1| putative phage terminase, large subunit [Clostridium botulinum Ba4
str. 657]
Length = 543
Score = 41.8 bits (96), Expect = 0.24, Method: Composition-based stats.
Identities = 41/295 (13%), Positives = 80/295 (27%), Gaps = 25/295 (8%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI- 111
W+ + +V + + N I GRG GK + L + ++ G
Sbjct: 66 PWEKFIVGLVHCYYDDGTVVWNTFF----IMMGRGAGKNGFISALSWYFTTSFHGKRGYN 121
Query: 112 --CLANSETQLKTT---LWAEVSKWLSLLPN----KHWFEMQSLSLHPAPWYSDVLHCSL 162
+ANSE Q KT+ ++ + L K + + S+
Sbjct: 122 VDIVANSEEQAKTSFDDVYEVIDDNKRLQKAFYYTKEKIVYKKTRSYLKFNTSNARTKDG 181
Query: 163 GIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEA---SGTPDVINLGILGFL 215
+ Y + + +G + +I+ G D L
Sbjct: 182 LRPACVIFDEIHEYEDYSNIKVFKSALGKKEHSRVFMISTNGNVRGGVLDDYLEIADDIL 241
Query: 216 TERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGL 275
N I RL + + + ++ +E + + L
Sbjct: 242 KGENKTMRMIPII--YRLDDDTEVDNKELWEKANPSIRYFKHLKLEMEQEYEDMQYQPQL 299
Query: 276 DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
+ + + Q + I +A N+E + G D A
Sbjct: 300 -AIEFMTKRMNRPAQDAYTVVAEWDKI-KATNQEIPELTGCSCVGGVDYASIRDF 352
>gi|145493391|ref|XP_001432691.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399805|emb|CAK65294.1| unnamed protein product [Paramecium tetraurelia]
Length = 733
Score = 41.8 bits (96), Expect = 0.24, Method: Composition-based stats.
Identities = 29/208 (13%), Positives = 62/208 (29%), Gaps = 20/208 (9%)
Query: 11 TEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV-VDAHCLNS 69
E K+ M ++ +F G++ ++ F+ W E + +
Sbjct: 303 PEFKIDLRMKPTKVFDAFLE---EQGDQGDEEQAVDKFTF-NWWCKEGIRANIAKIRQEF 358
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC------LANSETQLKTT 123
V+ N + + AI+ GIGK+T+ + + I + + QLKT
Sbjct: 359 VDYHNLKPIRIAITGPPGIGKSTIANQISTYFSIPHITIKELIQEYLNQTSEEVEQLKTN 418
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER--- 180
L ++ + ++ + + P+ + + +
Sbjct: 419 LEENRAQLVEEARAQYDIQREKRKQLKQPYIPFDDSKIEARLTDEQLITIYKWRLMQNDC 478
Query: 181 ------PDTFVGHHNTYGMAIINDEASG 202
D + H N E G
Sbjct: 479 QNRGFILDNYPKTHAQARQLFYNTEGEG 506
>gi|313124420|ref|YP_004034679.1| DNA or RNA helicase of superfamily ii [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280983|gb|ADQ61702.1| DNA or RNA helicase of superfamily II [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 1046
Score = 41.8 bits (96), Expect = 0.24, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 28/193 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
LE P ++Q E ++ + A ++ + A G+GKT + A+ ++
Sbjct: 316 LETSIRPYNYQQEILDRLQA------EREVYGHYRNLLVAATGVGKTVIAAFDFKRYLAE 369
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
P ++ +A+ + L+ +L Q + + L
Sbjct: 370 HPHARLLFVAHRQEILEQSL-------------------QKFREVLSDFNFGQLLVGQYK 410
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
S + Y II DE L+
Sbjct: 411 TDDVSQLFVSIQSFNSEKMADLLPSDYYDFIIIDEFHH---AAAKSYQKLLSHFKPKILL 467
Query: 225 IMTSNPRRLSGKF 237
+T+ P R+ G+
Sbjct: 468 GLTATPDRMDGQD 480
>gi|78049804|ref|YP_365979.1| DNA-dependent helicase II [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325926001|ref|ZP_08187367.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118]
gi|78038234|emb|CAJ25979.1| DNA helicase II [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|325543597|gb|EGD15014.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118]
Length = 723
Score = 41.8 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 49/378 (12%), Positives = 101/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 9 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 54
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 55 VTFT---NKAAGEM---------RHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 102
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + S P + + I
Sbjct: 103 PEGFQVMDSDDQLRLVKRVVQALELDESKYPPKQMSWWINEQKDEGRRPQHIQPEPNDDW 162
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ + +D + D+ +F + +
Sbjct: 163 TEVRRQVYAAYQER-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 215
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 216 DEFQDTNAIQYAFVRVLAGESGNVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 266
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 267 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGDGDPIDLYAAYNEV 323
Query: 414 TEL---HVKMADWLEFAS 428
E + W+
Sbjct: 324 DEARYVVERARQWVRDGG 341
>gi|294625145|ref|ZP_06703789.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292600564|gb|EFF44657.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 728
Score = 41.8 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 49/378 (12%), Positives = 101/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 14 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 60 VTFT---NKAAGEM---------RHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 107
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + S P + + I
Sbjct: 108 PEGFQVMDSDDQLRLVKRVVQALELDESKYPPKQMSWWINEQKDEGRRPQHIQPEPNDDW 167
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ + +D + D+ +F + +
Sbjct: 168 TEVRRQVYAAYQER-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 220
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 221 DEFQDTNAIQYAFVRVLAGESGNVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 271
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 272 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGDGDPIDLYAAYNEV 328
Query: 414 TEL---HVKMADWLEFAS 428
E + W+
Sbjct: 329 DEARYVVERARQWVRDGG 346
>gi|218901723|ref|YP_002449557.1| putative phage terminase, large subunit [Bacillus cereus AH820]
gi|218535697|gb|ACK88095.1| putative phage terminase, large subunit [Bacillus cereus AH820]
Length = 534
Score = 41.8 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 51/370 (13%), Positives = 101/370 (27%), Gaps = 50/370 (13%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
EK P FS +WQ + + + GRG GK ++
Sbjct: 41 EKPAPYFSFSL-FAWQRFCNAFIYGVRYADGRL---MFDRYLLLLGRGAGKNGYISYDSF 96
Query: 100 WLMSTRPGIS---VICLANSETQLKTTLWA-----EVSKWLSLL-----PNKHWFEMQSL 146
++++ GI + +A SE Q KT+ E K++ L +K +
Sbjct: 97 YMLTGHHGIKNYDIDIVATSEDQAKTSFQDVYDILEAPKFMRKLKKVFYKSKILIKHLKT 156
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEA-- 200
S+ Y + + +G + I +
Sbjct: 157 KSKFEFNTSNARTKDGKRSGAVIFDELHEYEDYSNIKVFTSGLGKKKDPRIFYITTDGNV 216
Query: 201 -----SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWK-----R 250
D + + L + F N + + + P + +
Sbjct: 217 RGGVLDDMKDEAQMVLNKELPDSTLFPFICKLDNEKEVHDESMWEKANPSYRYNENLQHK 276
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
+ + ++ E + R L + TR EV + + P +I
Sbjct: 277 MRKEYHDMKRNSALRIEFMTKRMNLPVEDTRKEVATYEERLATEQPFPDDI--------- 327
Query: 311 CPDPYAPLIMGCDIAEEGGDNT--VVVLRRGPVI---EHLFDWSKTDLRTTNNKISGLVE 365
I D A+ + V+ + G + L+ N I +
Sbjct: 328 ---QGIECIGAVDFAQIRDFCSVGVLFKKDGKRYWMQHTFMHHTAPKLQDINPDIIRIAI 384
Query: 366 KYRPDAIIID 375
+ ++ D
Sbjct: 385 EKGLLTVVYD 394
>gi|28197981|ref|NP_778295.1| DNA-dependent helicase II [Xylella fastidiosa Temecula1]
gi|28056041|gb|AAO27944.1| DNA helicase II [Xylella fastidiosa Temecula1]
gi|307579063|gb|ADN63032.1| DNA-dependent helicase II [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 728
Score = 41.8 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 60/378 (15%), Positives = 106/378 (28%), Gaps = 49/378 (12%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+ N I AG G GKT + ++WL + + + +
Sbjct: 7 LYHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWL-------NEVNGVPT-HSMM 58
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
+ + + ++S H++ + +
Sbjct: 59 AVTFTNKAAGEIQQRIDLQLRHGKRGMWIGTFHSLAHRLLRL----HWNDATLPENFQVI 114
Query: 182 DTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF 241
D+ + +LG+ L +WI T + I
Sbjct: 115 DSDDQLRLVKRVI------------QSLGLNDTLFPPKQAMWWINTQKDEGR--RPEHIQ 160
Query: 242 NKPLDDW--------KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ DDW +Q +D S D+ +F + I
Sbjct: 161 PESHDDWIETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALLTHYRSRFREILI 220
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R D +G D+ + RG +EH+ + K D
Sbjct: 221 DEFQDTNAIQYAFVRVLANDTGHIFAVG-------DDDQAIYGWRGAKVEHVQHFLK-DF 272
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
L + YR A I+DA N A + +G ++ G ++DL N
Sbjct: 273 PNVQ--TIRLEQNYRSSANILDAAN--AIIAHNPDRIGKRLWTESGVGESIDLYAAYNEI 328
Query: 414 TEL---HVKMADWLEFAS 428
E + W+
Sbjct: 329 DEARYIVERARQWVRDGG 346
>gi|239931606|ref|ZP_04688559.1| type III restriction-modification enzyme, R/helicase subunit
[Streptomyces ghanaensis ATCC 14672]
gi|291439978|ref|ZP_06579368.1| type III restriction enzyme [Streptomyces ghanaensis ATCC 14672]
gi|291342873|gb|EFE69829.1| type III restriction enzyme [Streptomyces ghanaensis ATCC 14672]
Length = 1064
Score = 41.8 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 15/106 (14%)
Query: 18 LMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
W+D + F G R W + H + N +
Sbjct: 102 EYWTDPERERKLFFAQVEAVETAIYLTEVGTKLGRPW-------IKTHLEETNQEHNAGL 154
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMS--------TRPGISVICLAN 115
+ A+ G GKT + A L+ W + R + +A
Sbjct: 155 PRVALKMATGAGKTVVMAMLIAWNVLNKVASPQDARFAKRFLLVAP 200
>gi|330992641|ref|ZP_08316586.1| phage DNA packaging protein [Gluconacetobacter sp. SXCC-1]
gi|329760295|gb|EGG76794.1| phage DNA packaging protein [Gluconacetobacter sp. SXCC-1]
Length = 437
Score = 41.8 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 58/447 (12%), Positives = 115/447 (25%), Gaps = 76/447 (17%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ + G GKT + ++ G + ++
Sbjct: 11 QRRANRLLGSAATHILLRGGARSGKTFVLVRAMVIRALRAGGT------------RHGIF 58
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPA-PWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
L F + P PW ++ + + +ER +
Sbjct: 59 RHRLNALRATVVADTFPAVMRACFPTVPWALSRTDWTVELPNGSSIVFGGLDDDERTEKI 118
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT-----SNPRRLSGKFYE 239
+G + +EAS G L R A + + +NP S Y
Sbjct: 119 LGL---EFATVYLNEASQIT----YGARNMLLTRLAQKSPLALKEYVDANPPTTSHWLYR 171
Query: 240 IFNK--------PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+F + PLD + + E + L R + G++
Sbjct: 172 VFEEGVEPTSGTPLDRARHATMQLNPAGNRANLSAEYMAQLAALPERERRRFMEGEYQHA 231
Query: 292 DIDSFIPLNIIEEALN-----REPCPDPYAPLIMGCDIA------EEGGDNTVVVL---- 336
+ + A R +++ D + + D +V+
Sbjct: 232 VDGALWRMEDFARAAAITPATRGAIAAHMRRIVVAVDPSGCSGPEDMRSDEIGIVVCGVD 291
Query: 337 --RRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
G V+ L + + I+ + N GA L L +
Sbjct: 292 AAGAGHVLADLSRRD--SPAGWARAALQAQADWGAERIVAEQNFGGALVEATLRGLNPNA 349
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH---SGLIQNLKSLKSFIVPNTG 451
+ R E + + + +H + L L +G
Sbjct: 350 ALTMVSASRGKAA-----RAEPVAALYE---QGRVTHHGTFAALETQLCQ-----FSASG 396
Query: 452 ELAIESKRVKGAKSTDYSDGLMYTFAE 478
GA+S D +D L++ ++
Sbjct: 397 Y--------HGAQSPDRADALVWALSD 415
>gi|300933463|ref|ZP_07148719.1| Terminase [Corynebacterium resistens DSM 45100]
Length = 532
Score = 41.8 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 39/297 (13%), Positives = 82/297 (27%), Gaps = 30/297 (10%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG---ISV 110
WQ + + + + + + + GK+ L A + L L++ G V
Sbjct: 49 WQEQIVRDLFGTI---KPDGYRQFTTAYVEIPKKQGKSELAAAIAL-LLTCGDGEQAAEV 104
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q + ++ + + P ++ LS Y + ++ YS
Sbjct: 105 YGCAADRQQA-SIVFEVAADMIRQSPA-LSKRVKILSSQKRIIYKPTNSFYQVLSAEAYS 162
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
S F H A+ + G+ D + +T + I
Sbjct: 163 KHGFNIS---GVVFDELHTQPNRALFDVMTKGSGDARTQPLYFLITTAGTDTHSICYEQH 219
Query: 231 RRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVEGI-DPSFHEGII------AR 272
++ + P DDW ++ + + E + +
Sbjct: 220 QKARDILAGKKHDPTFYPVIYGAELDDDWTDEKVWHKANPSLGVTVPVEKVRAACNSARQ 279
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + R Q+ +Q + A + P G D+A
Sbjct: 280 NPAEENSFRQLRLNQWVKQSVRWMPMHIWDACADPVDLDELEGRPCYGGLDLASTTD 336
>gi|229061295|ref|ZP_04198644.1| Terminase [Bacillus cereus AH603]
gi|228718020|gb|EEL69662.1| Terminase [Bacillus cereus AH603]
Length = 549
Score = 41.8 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 53/363 (14%), Positives = 96/363 (26%), Gaps = 39/363 (10%)
Query: 16 FDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNP 75
DL + DE+ NF GEK + + +Q + V +
Sbjct: 34 DDLYFDDEMIEDCINF-------GEKW-----YFPLQPFQKFLIAFVFLFYKKNGRVFYR 81
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTR---PGISVICLANSETQLKTTLWAEVSKWL 132
+ GRG GK L + ++ +L+S P ++ +ANSE Q KT+ EV K +
Sbjct: 82 KFLWML---GRGGGKNGLISVIIHFLISELHGIPEYNISVVANSEEQAKTSP-DEVHKCV 137
Query: 133 SLL-PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC-----------RTYSEER 180
K F+ S + + D+K
Sbjct: 138 KKNEVLKRAFKTTLTQTVSKATESVLKFRTSNGDTKDGLRDGAVVFDEIHQYESNKDVRV 197
Query: 181 PDTFVGHHNTYGMAIINDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ +G I + D + L +
Sbjct: 198 HISGLGKKKNPREFYIGTDGYVRDGFLDKQKEKAMKVLNGEARPNAVFPFICKLNDETEV 257
Query: 238 YEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD--VTRVEVCGQFPQQDIDS 295
++ N L + + + EG+ + E S+ + S
Sbjct: 258 DDLDNWDLANPMLSKPLSEYAEGLLETIKEEYEDLEDDPSNREEFMTKRMNLPVTNLERS 317
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV--VVLRRGPVIEHLFDWSKTDL 353
+ I A R I D A + + G + + + +
Sbjct: 318 VAKWSEI-LATERPFPDLHGQECIGSLDFASIRDFAACGLLFRQSGEYLFKTHSFVRKEF 376
Query: 354 RTT 356
Sbjct: 377 VDI 379
>gi|154272686|ref|XP_001537195.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
capsulatus NAm1]
gi|150415707|gb|EDN11051.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
capsulatus NAm1]
Length = 1992
Score = 41.8 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR-PGI 108
+E + A N ++F + + G GKT + A L +W PG
Sbjct: 1133 ILEDIYAQRFQFFNPMQTQIFHTLYHTAANVLLGSPTGSGKT-VAAELAMWWAFREKPGS 1191
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1192 KVVYIAPMKALVRER----VQDWRRRLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPE 1247
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1248 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1292
>gi|308051343|ref|YP_003914909.1| ABC transporter [Ferrimonas balearica DSM 9799]
gi|307633533|gb|ADN77835.1| ABC transporter related protein [Ferrimonas balearica DSM 9799]
Length = 190
Score = 41.8 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 23/188 (12%), Positives = 65/188 (34%), Gaps = 13/188 (6%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
+ + ++ + + ++ G GKTTL +++ + +
Sbjct: 7 LLYSIGSNTIIKNLSLEFGHGDTLVTGPNGCGKTTLL--MIICGLIN--PTRGSVTVDKA 62
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY-------S 170
Q T ++ ++ ++ P +++ Q LSL + D ID
Sbjct: 63 FQSGTQTFSLSTEAIT--PPQNFTASQLLSLFNRYNHVDAERQCELIDKTEMCQFLNFNI 120
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
T S+++ + ++++ +G + L L++ + + +N
Sbjct: 121 GELSTGSKKKLSLITAISKRSKILLLDEPFNGLDNESLLVFESTLSDDTRGKIIVDHNNK 180
Query: 231 RRLSGKFY 238
+++ F+
Sbjct: 181 LKINNTFH 188
>gi|260880948|ref|ZP_05403222.2| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
gi|260850003|gb|EEX70010.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
Length = 546
Score = 41.8 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 42/377 (11%), Positives = 91/377 (24%), Gaps = 58/377 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISVI 111
W F + + + + N E K +S+ RG K+TL++ VLW ++
Sbjct: 41 PWSEAFHKWLIHKYEDIIFNHKDEQNKVCVSSPRGHAKSTLSSFAFVLWCALYGYKKFIV 100
Query: 112 CLANSETQLKTTLWAEVSKWLSLLP--------NKHWFEMQSLSLHPAPWYSDVLHCSLG 163
++ + K + + + P K+ S L + +
Sbjct: 101 IISATAIVAKQFILN-IRDAIEFNPLIKRDFGSLKNDSLWNSQELLLRTGAYIICKGANA 159
Query: 164 IDSKHYSTMCRT--------YSEERPDTFVGHHN---------------TYGMAIIND-- 198
R S+E D+ + I
Sbjct: 160 QLRGLQFGGTRPDLALLDDMESQEEVDSPTQVDSLEHWLTADVIPMLSVDGDAIFIGTVL 219
Query: 199 -------------EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
+ ++ + N W Y
Sbjct: 220 SYNSVLWRLLTEARFASWERKRFQAVIE-FSPSNLWAEWESIMTDLSRGDNAYREAKNFY 278
Query: 246 DDWKRFQIDTRTV--EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
++ K +D V + ++ + + E P + +E
Sbjct: 279 NEHKEEMLDGAKVLWPDQRKDQYLYLMEKRLESEESFASEYQND-PMTENLRVFKTEWLE 337
Query: 304 EAL--NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG----PVIEHLFDWSKTDLRTTN 357
+ L + + ++VL RG + ++ + +
Sbjct: 338 NNYYEETPDIKEVNIALDPAVSTSRTADYSVILVLGRGTDNYFYVLECDAQKRSGDKLID 397
Query: 358 NKISGLVEKYRPDAIII 374
+ + YR II
Sbjct: 398 DAKKIIATYYRYRPKII 414
>gi|29366741|ref|NP_813786.1| DNA packaging protein B [Pseudomonas phage gh-1]
gi|29243600|gb|AAO73179.1|AF493143_40 DNA packaging protein B [Pseudomonas phage gh-1]
Length = 582
Score = 41.8 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK-TTLWAEVSKWLSLLP 136
+ + A RGIGK+ + V+W + P + + ++ S+ + +++ + + + LLP
Sbjct: 51 RRFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSVF--IKRIIDLLP 108
Query: 137 NKHWFEM-QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
H + + K +
Sbjct: 109 FLHELKPGPGQRDSSLAFDVGPAKPDHSPSVKSVGITGQLTGSRA 153
>gi|269955350|ref|YP_003325139.1| hypothetical protein Xcel_0542 [Xylanimonas cellulosilytica DSM
15894]
gi|269304031|gb|ACZ29581.1| phage uncharacterized protein [Xylanimonas cellulosilytica DSM
15894]
Length = 495
Score = 41.8 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 38/345 (11%), Positives = 81/345 (23%), Gaps = 39/345 (11%)
Query: 87 GIGKTTLNA-WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS 145
GK+TL W WL++ RP + +A+ + + + ++ + ++
Sbjct: 66 QEGKSTLATKWAPTWLLNQRPDTRI-VIASYAATVARRMGRLIRSEITTHADSLDIRLKD 124
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ + + R D + + AS
Sbjct: 125 DVAAQNEFEIKGHIGGVYAVGVGGALTSRPADVLIIDDPLKDREQADSDTYRERAS---- 180
Query: 206 VINLGILGFLTERNANRFWIMT-SNPRRLSGKFYEIFNKPLDDWKRFQ------IDTRTV 258
A I+T + L+G+ + + D
Sbjct: 181 DWWTSTASSRLAPGAPVILILTRWHHDDLAGRLMAAEDGKQWRYVNIPAQADYDPDAGET 240
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQ-----------FPQQDIDSFIPLNIIEEALN 307
+ + E +I+ G P P +
Sbjct: 241 DPLGRQPGEYMISARGRTHTQWEQRRMQAGPRDWNALYQGRPTAGSGDLFPKEWARYSQP 300
Query: 308 REPC------PDPYAPLIMGCDIAEEGGDNTV-------VVLRRGPVIEHLFD-WSKTDL 353
P + D V LR+G + L ++ +
Sbjct: 301 MHIVRDDGSCWVPGTGFELVQSWDFTFKDKPTSDFVVGQVWLRQGVTMFLLDQVRARMNF 360
Query: 354 RTTNNKISGLVEKYRPD-AIIIDANNTGARTCDYLEMLGYHVYRV 397
+ I + K+ A +++ G L + V
Sbjct: 361 TASLAAIKAMTAKWPQAVAKLVEDKANGTAIITSLSATVPGIIAV 405
>gi|145486706|ref|XP_001429359.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124396451|emb|CAK61961.1| unnamed protein product [Paramecium tetraurelia]
Length = 733
Score = 41.8 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 11/174 (6%)
Query: 11 TEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV-VDAHCLNS 69
E K+ M ++ +F G++ ++ F+ W E + +
Sbjct: 303 PEFKIDLRMKPTKVFDAFLE---EQGDQGDEEQAVDKFTF-NWWCKEGIRANIAKIRQEF 358
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC------LANSETQLKTT 123
V+ N + + AI+ GIGK+T+ + + I + + QLKT
Sbjct: 359 VDYHNLKPIRIAITGPPGIGKSTIANQISTYFSIPHITIKELIQEYLNQTSEEVEQLKTN 418
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
L ++ + ++ + + P+ + +
Sbjct: 419 LEENRAQLIEEARAQYDIQREKRKQLKQPYIPFDDSKIEARLTDEQLITIYKWR 472
>gi|255320900|ref|ZP_05362074.1| putative phage terminase, large subunit [Acinetobacter
radioresistens SK82]
gi|255302069|gb|EET81312.1| putative phage terminase, large subunit [Acinetobacter
radioresistens SK82]
Length = 612
Score = 41.8 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 34/292 (11%), Positives = 76/292 (26%), Gaps = 29/292 (9%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW--LMSTRPGIS 109
WQ+ + + I + GK+T A + L+ + G
Sbjct: 109 EPWQVFATLNMFGW---ADLEGKRRFIYVYIEVAKKNGKSTWLAAIALYLGFLDGEMGAE 165
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLP---NKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
V A S Q K ++++ K + P + E ++ S + S
Sbjct: 166 VYTAATSAEQAK-IVFSDAKKMVEYSPKMRTRFGIEFSQYTVFQTETNSVLKALSQDRAG 224
Query: 167 KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW-- 224
+ H T M I + + + + ++ +
Sbjct: 225 TKDGLNVHGAIIDELHA----HKTADMYDILSNGIAAREEPLIAAISTAGDDTTSKCYQE 280
Query: 225 ------IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-------GIIA 271
I+ + DDW ++ + S E +
Sbjct: 281 RQVVVDILKNKAVHDQYFGMIFCLDRGDDWLDPKVWPKANPNYGISVTEKYLHSVFEKVK 340
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD 323
+TR + ++ I + E+A + + + + +
Sbjct: 341 ISPKQESITRQKHLNEWVGAIDGW-ISPTVWEKAEDSKVIEESFEGQLCFGG 391
>gi|224823662|ref|ZP_03696771.1| Terminase [Lutiella nitroferrum 2002]
gi|224604117|gb|EEG10291.1| Terminase [Lutiella nitroferrum 2002]
Length = 540
Score = 41.8 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 8/123 (6%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+S NFV +F + WQL + + N
Sbjct: 20 YFSPAHAWHCINFVQGWFVHTTGPLGGKPIVL-DGWQLFWTAALIGWREIDTNLRRFRTG 78
Query: 79 KGAISAGRGIGKTTLNA--WLVLWLMSTRPGISVICLANSETQLKTTL---WAEVSKWLS 133
++ R GK+T A LW+M G V +A + Q +A V +W+
Sbjct: 79 YEEVA--RKNGKSTWMAPIGTYLWMMDGEEGAQVYTIATTRAQAMPVFKPAFANVKRWVR 136
Query: 134 LLP 136
P
Sbjct: 137 KSP 139
>gi|194901062|ref|XP_001980071.1| GG16932 [Drosophila erecta]
gi|190651774|gb|EDV49029.1| GG16932 [Drosophila erecta]
Length = 2183
Score = 41.8 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 9/140 (6%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ P V+ +A + +K + ++
Sbjct: 1355 VLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIGDWEQRFQRSSLGLK 1414
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E+ + + + + + R++ + I+ DE
Sbjct: 1415 VVELTGDVTPDIQAIRESQL--IVTTPEKWDGISRSWQTREYV-------QHVSLIVIDE 1465
Query: 200 ASGTPDVINLGILGFLTERN 219
+ I ++ N
Sbjct: 1466 IHLLGEDRGPVIEVIVSRTN 1485
>gi|67524049|ref|XP_660086.1| hypothetical protein AN2482.2 [Aspergillus nidulans FGSC A4]
gi|40744644|gb|EAA63800.1| hypothetical protein AN2482.2 [Aspergillus nidulans FGSC A4]
gi|259487904|tpe|CBF86944.1| TPA: DEAD/DEAH box helicase, putative (AFU_orthologue; AFUA_4G03070)
[Aspergillus nidulans FGSC A4]
Length = 2015
Score = 41.8 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W RPG V+ +A + ++ V W
Sbjct: 1146 HTAANVLLGSPTGSGKT-VAAELAMWWAFRERPGSKVVYIAPMKALVRER----VMDWGR 1200
Query: 134 LLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L + ++ + + + + + + R++
Sbjct: 1201 RLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYVR-------KV 1253
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1254 SLVIIDEIHLLGGDRGPILEIIVSRMN 1280
>gi|182680607|ref|YP_001828767.1| DNA-dependent helicase II [Xylella fastidiosa M23]
gi|182630717|gb|ACB91493.1| DNA helicase II [Xylella fastidiosa M23]
Length = 723
Score = 41.8 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 60/379 (15%), Positives = 107/379 (28%), Gaps = 50/379 (13%)
Query: 62 VDAHCLNSVNNPNPEVFK-GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ H + I AG G GKT + ++WL + + + +
Sbjct: 1 MLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWL-------NEVNGVPT-HSM 52
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+ + + ++S H++ + +
Sbjct: 53 MAVTFTNKAAGEIQQRIDLQLRHGKRGMWIGTFHSLAHRLLRL----HWNDATLPENFQV 108
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
D+ + +LG+ L +WI T + I
Sbjct: 109 IDSDDQLRLVKRVI------------QSLGLNDTLFPPKQAMWWINTQKDEGR--RPEHI 154
Query: 241 FNKPLDDW--------KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
+ DDW +Q +D S D+ +F +
Sbjct: 155 QPESHDDWIETQRRIYTEYQERCNRAGLVDFSELLLRAHELLRDTPALLTHYRSRFREIL 214
Query: 293 IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTD 352
ID F N I+ A R D +G D+ + RG +EH+ + K D
Sbjct: 215 IDEFQDTNAIQYAFVRVLANDTGHIFAVG-------DDDQAIYGWRGAKVEHVQHFLK-D 266
Query: 353 LRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNR 412
L + YR A I+DA N A + +G ++ G ++DL N
Sbjct: 267 FPNVQ--TIRLEQNYRSSANILDAAN--AIIAHNPDRIGKRLWTESGVGESIDLYAAYNE 322
Query: 413 RTEL---HVKMADWLEFAS 428
E + W+
Sbjct: 323 IDEARYIVERARQWVRDGG 341
>gi|258578215|ref|XP_002543289.1| potential translation-regulating helicase [Uncinocarpus reesii 1704]
gi|237903555|gb|EEP77956.1| potential translation-regulating helicase [Uncinocarpus reesii 1704]
Length = 1899
Score = 41.8 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 43/142 (30%), Gaps = 14/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W PG ++ +A + ++ V W L
Sbjct: 1120 VLLGSPTGSGKT-VAAELAMWWAFREKPGSKIVYIAPMKALVRER----VQDWRRRLAIP 1174
Query: 139 HWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ ++ + + + + + + R++ +I
Sbjct: 1175 LGLKLVELTGDNTPDTRTIRNADMIITTPEKWDGISRSWQTRGYVR-------QVSLVII 1227
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + ++ N
Sbjct: 1228 DEIHLLGGDRGPILEIIVSRMN 1249
>gi|302422104|ref|XP_003008882.1| DEAD/DEAH box helicase [Verticillium albo-atrum VaMs.102]
gi|261352028|gb|EEY14456.1| DEAD/DEAH box helicase [Verticillium albo-atrum VaMs.102]
Length = 1801
Score = 41.8 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 43/361 (11%), Positives = 95/361 (26%), Gaps = 42/361 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P +WQ + ++ +DA+ + A GKT ++ + + ++ +
Sbjct: 754 PDAWQRKVLDTIDANN------------SLMVVAPTSAGKTFISFYAMKKILQANDDDVL 801
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ +A ++ + AEV+ S + + + +H + + + + +
Sbjct: 802 VYVAPTKALVNQIA-AEVAARYSKSYTREGKSVWA--IHTRDYRVNNPTGCQVLVTVPHV 858
Query: 171 TMCRTYSEERPDTFVG-HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ D + G + + L I S
Sbjct: 859 LQTMLLAPSNSDRPSAWARRVKRIIFDEVHCIGQAEDGIVWEQLLLLAPCP---IIALSA 915
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFP 289
+G+F++ V + ++ SD+ R V
Sbjct: 916 TVGNAGEFHD---------------WLAVSQAQKGYKMELVVHNARYSDL-RKFVYCPPK 959
Query: 290 QQDIDSF-----IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEH 344
Q +D +P+ I++ R P P+ DI D+ + R
Sbjct: 960 QLKMDVLAKQDQLPIPGIDQGEERNPRFFFTHPIAALLDINRGSLDDVSLEPRD-CWTLW 1018
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
K D + A L+ V
Sbjct: 1019 KCMDKHQTTDFPVAKSLDPGSTLPKIISKADILSWEAGLKKVLQQW-MVVPESPFSAVRT 1077
Query: 405 D 405
+
Sbjct: 1078 E 1078
>gi|225555208|gb|EEH03501.1| activating signal cointegrator 1 complex subunit 3 [Ajellomyces
capsulatus G186AR]
Length = 2017
Score = 41.8 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 50/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR-PGI 108
+E + A N ++F + + G GKT + A L +W PG
Sbjct: 1133 ILENIYAQRFQFFNPMQTQIFHTLYHTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGS 1191
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLL-PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L ++ + + + +
Sbjct: 1192 KVVYIAPMKALVRER----VQDWRRRLTAPMDLKLVELTGDNTPDTRTIRDADIIITTPE 1247
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1248 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1292
>gi|254500214|ref|ZP_05112365.1| hypothetical protein SADFL11_250 [Labrenzia alexandrii DFL-11]
gi|254505306|ref|ZP_05117454.1| hypothetical protein SADFL11_PLAS4 [Labrenzia alexandrii DFL-11]
gi|222436150|gb|EEE42832.1| hypothetical protein SADFL11_PLAS4 [Labrenzia alexandrii DFL-11]
gi|222436285|gb|EEE42964.1| hypothetical protein SADFL11_250 [Labrenzia alexandrii DFL-11]
Length = 627
Score = 41.8 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 37/330 (11%), Positives = 78/330 (23%), Gaps = 32/330 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRP-GISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
I A RG+GK+ + A V+WL+ P V+ ++ S + K + + +P W
Sbjct: 88 IRAFRGLGKSYITAAFVIWLLMRNPKDEKVMVVSASSGKAKQ-FVDQTKGIIQSMPEIRW 146
Query: 141 FEMQSLSLHPAPW-YSDVLHCSLGIDSKHYSTMCRTYSEE-RPDTFVGHHNTYGMAIIND 198
+D + S+ +S R + + N
Sbjct: 147 LLEGDRQEGATRRDKADEFDVAGASLSQSHSVTARGITGQITGSRATTLIADDIEIESNS 206
Query: 199 EASGTPDVINLGIL----GFLTERNANRFWIMTSNPRRLSG----------------KFY 238
+ I +L + I P+
Sbjct: 207 KTEEARQRILNVVLSDFVPVTKTEHGKGDIIFLGTPQTEESVYNVLVIEMGFSCFCIPVR 266
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
++ ++ + P + +
Sbjct: 267 YPTADKRKNYVLITEGREEIDILAPYLRYMRDRSEVREGRAIDTRFSDEEMNAIEAKGRS 326
Query: 299 LNIIEEALNREPCPDPYAPL----IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT--- 351
++ L+ PL ++ + T+ R I + D
Sbjct: 327 TFALQYMLDTSLSDAERYPLRQHDLIVFECNPTKAPVTIQWGRHSDKINVIKDIPNLGFS 386
Query: 352 -DLRTTNNKISGLVEKYRPDAIIIDANNTG 380
D + Y + +D + G
Sbjct: 387 GDYLLRPLFVDQEWRDYEQSVLFVDPSGRG 416
>gi|138895652|ref|YP_001126105.1| DNA/RNA helicase [Geobacillus thermodenitrificans NG80-2]
gi|134267165|gb|ABO67360.1| DNA/RNA helicase [Geobacillus thermodenitrificans NG80-2]
Length = 815
Score = 41.4 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 43/319 (13%), Positives = 87/319 (27%), Gaps = 47/319 (14%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
PR Q+E +E ++A + + G+GKT L A+ R V
Sbjct: 224 PRFAQVEALERLEAAYEEGYDKAM-------VVMATGLGKTYLAAFFA------RRFSRV 270
Query: 111 ICLANSE---TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ +A+ E Q K + + + + + H + + + + + +
Sbjct: 271 LFIAHREEILRQAKQSFECVIPDRTAGIYDGHQKDGNADMVFASIFTLSMKKHLF----- 325
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
I+ DE L +T
Sbjct: 326 ------------------SFRPDSFDLIVVDEFHH---AAARSYERVLRYFRPEFLLGIT 364
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ P R K ++ I+ + P + G+ D+D ++++ G
Sbjct: 365 ATPDRNDNKDVYAICDGNVAYRIDFIEAVQRGWLAPFHYYGVY----DDTDYSQIKWLGS 420
Query: 288 FPQQDI-DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF 346
++ + E + R ++ C + RRG L
Sbjct: 421 RYDEEELLQVQLREEMAENILRAWEQYKKTRTLVFCSSIRQADFLCEYFRRRGYRTVSLH 480
Query: 347 DWSKTDLRTTNNKISGLVE 365
T R + E
Sbjct: 481 SKQTTIPRQQAIAMLEQCE 499
>gi|333028964|ref|ZP_08457027.1| hypothetical protein STTU_p0001 [Streptomyces sp. Tu6071]
gi|332742172|gb|EGJ72614.1| hypothetical protein STTU_p0001 [Streptomyces sp. Tu6071]
Length = 911
Score = 41.4 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 32/239 (13%), Positives = 57/239 (23%), Gaps = 24/239 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNP--EVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
R Q+E M + + + + + G GKT A L L P
Sbjct: 19 RKHQVELMSDLRKWVRVAARESARTERGARATVVSATGTGKTISAAAAALEL---FPSGR 75
Query: 110 VICLANSETQLKTT------------LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDV 157
V+ + + L T + S LL + + + A W
Sbjct: 76 VLVMVPTLDLLVQTAQSWRAVGHTAPMVGVCSLPRDLLLEELRVRTTTHPIRLALWAGSG 135
Query: 158 LHCSLGIDSKHYSTMCRTYSEERPDTFVGH---HNTYGMAIINDEA---SGTPDVINLGI 211
L S + E G + DEA +G+ + I
Sbjct: 136 PVVVLATYSSLVGEDGQGGPLEAALAGAGLYGQRMDGFDLAVVDEAHRTAGSAEKAWAAI 195
Query: 212 LGFLTERNA-NRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI 269
A + T + + + G ++ +
Sbjct: 196 HDNARFPAAHRLYLTATPRVLAPARPARHEGEEGRGEAPALVTMANDPAGEYGAWIHEL 254
>gi|284446123|gb|ADB87625.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
Length = 742
Score = 41.4 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 51/180 (28%), Gaps = 26/180 (14%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P ++A RG GK+ + +LM+ +++ + + + + V K L
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
L K+ + + + N G
Sbjct: 288 LNVKYKLTTSKDGKIMKITTGESRVKWV--------------------SPDLARNEEGDL 327
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG-KFYEIFNKPLDDWKRFQI 253
I+ DEA+ IL + + T + SG F + N+ I
Sbjct: 328 IVVDEAAAIGMEFLDYIL----QGWDKTILVTTVHGYEGSGKAFLKYVNRLKSKVLLKHI 383
>gi|229581726|ref|YP_002840125.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
islandicus Y.N.15.51]
gi|228012442|gb|ACP48203.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
islandicus Y.N.15.51]
Length = 742
Score = 41.4 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 51/180 (28%), Gaps = 26/180 (14%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P ++A RG GK+ + +LM+ +++ + + + + V K L
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
L K+ + + + N G
Sbjct: 288 LNVKYKLTTSKDGKIMKITTGESRVKWV--------------------SPDLARNEEGDL 327
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG-KFYEIFNKPLDDWKRFQI 253
I+ DEA+ IL + + T + SG F + N+ I
Sbjct: 328 IVVDEAAAIGMEFLDYIL----QGWDKTILVTTVHGYEGSGKAFLKYVNRLKSKVLLKHI 383
>gi|229579609|ref|YP_002838008.1| protein of unknown function DUF699 ATPase [Sulfolobus islandicus
Y.G.57.14]
gi|317412141|sp|C3N792|TMCA_SULIY RecName: Full=Putative tRNA(Met) cytidine acetyltransferase
gi|228010324|gb|ACP46086.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
islandicus Y.G.57.14]
Length = 743
Score = 41.4 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 51/180 (28%), Gaps = 26/180 (14%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P ++A RG GK+ + +LM+ +++ + + + + V K L
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
L K+ + + + N G
Sbjct: 288 LNVKYKLTTSKDGKIMKITTGESRVKWV--------------------SPDLARNEEGDL 327
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG-KFYEIFNKPLDDWKRFQI 253
I+ DEA+ IL + + T + SG F + N+ I
Sbjct: 328 IVVDEAAAIGMEFLDYIL----QGWDKTILVTTVHGYEGSGKAFLKYVNRLKSKVLLKHI 383
>gi|227830703|ref|YP_002832483.1| protein of unknown function DUF699 ATPase [Sulfolobus islandicus
L.S.2.15]
gi|227457151|gb|ACP35838.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
islandicus L.S.2.15]
Length = 742
Score = 41.4 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 51/180 (28%), Gaps = 26/180 (14%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P ++A RG GK+ + +LM+ +++ + + + + V K L
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
L K+ + + + N G
Sbjct: 288 LNVKYKLTTSKDGKIMKITTGESRVKWV--------------------SPDLARNEEGDL 327
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG-KFYEIFNKPLDDWKRFQI 253
I+ DEA+ IL + + T + SG F + N+ I
Sbjct: 328 IVVDEAAAIGMEFLDYIL----QGWDKTILVTTVHGYEGSGKAFLKYVNRLKSKVLLKHI 383
>gi|291335709|gb|ADD95314.1| DNA packaging protein B [uncultured phage MedDCM-OCT-S05-C139]
Length = 309
Score = 41.4 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 18/195 (9%), Positives = 45/195 (23%), Gaps = 17/195 (8%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ I A RG+GK+ + VLW + P ++ ++ S+ + +
Sbjct: 40 QSGPKRLQIQAFRGVGKSWITGAFVLWTLFNDPEKKIMIISASKERADNMSIFLQKLIIE 99
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
H + K + G +
Sbjct: 100 TPWLNHLQPKSDDGRWSRISFDVACSPHQAPSVKSVGITGQLT---------GSRADLMI 150
Query: 194 A-IINDEASGTPDVINLGI-------LGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
I + +++ + LT ++ +R + + +
Sbjct: 151 LDDIEVPGNSMTELMREKLLQLCTEAESILTPKDDSRIMYLGTPQTTFTIYRKLAARNYR 210
Query: 246 DDWKRFQIDTRTVEG 260
+
Sbjct: 211 PFVWTARYPRNNTPY 225
>gi|71275503|ref|ZP_00651789.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
gi|71900751|ref|ZP_00682872.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
gi|170729288|ref|YP_001774721.1| DNA-dependent helicase II [Xylella fastidiosa M12]
gi|71163803|gb|EAO13519.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon]
gi|71729481|gb|EAO31591.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
gi|167964081|gb|ACA11091.1| DNA helicase II [Xylella fastidiosa M12]
Length = 723
Score = 41.4 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 53/372 (14%), Positives = 101/372 (27%), Gaps = 36/372 (9%)
Query: 62 VDAHCLNSVNNPNPEVFK-GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ H + I AG G GKT + ++WL + + + +
Sbjct: 1 MLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWL-------NEVNGVPT-HSM 52
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+ + + ++S H++ + +
Sbjct: 53 MAVTFTNKAAGEIQQRIDLQLRHGKRGMWIGTFHSLAHRLLRL----HWNDATLPENFQV 108
Query: 181 PDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
D+ + + + P + + + I P
Sbjct: 109 IDSDDQLRLVKRVIQSLGLNDTLFPPKQAMWWINTQKDEGRRPEHI---QPESHDDWIET 165
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+ +Q +D S D+ +F + ID F
Sbjct: 166 QRRI----YTEYQERCNRAGLVDFSELLLRAHELLRDTPALLTHYRSRFREILIDEFQDT 221
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
N I+ A R D +G D+ + RG +EH+ + K D
Sbjct: 222 NAIQYAFVRVLANDTGHIFAVG-------DDDQAIYGWRGAKVEHVQHFLK-DFPNVQ-- 271
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL--- 416
L + YR A I+DA N A + +G ++ G ++DL N E
Sbjct: 272 TIRLEQNYRSSANILDAAN--AIIAHNPDRIGKRLWTESGVGESIDLYAAYNEIDEARYI 329
Query: 417 HVKMADWLEFAS 428
+ W+
Sbjct: 330 VERARQWVRDGG 341
>gi|229585247|ref|YP_002843749.1| hypothetical protein M1627_1829 [Sulfolobus islandicus M.16.27]
gi|228020297|gb|ACP55704.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
islandicus M.16.27]
Length = 742
Score = 41.4 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 21/141 (14%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P ++A RG GK+ + +LM+ +++ + + + + V K L
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
L K+ + S + + N G
Sbjct: 288 LNVKYKLTTSKDGKIMK--------------------IATGESRVKWVSPDLARNEEGDL 327
Query: 195 IINDEASGTPDVINLGILGFL 215
I+ DEA+ IL
Sbjct: 328 IVVDEAAAIGMEFLDYILQGW 348
>gi|166710261|ref|ZP_02241468.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 728
Score = 41.4 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 52/391 (13%), Positives = 97/391 (24%), Gaps = 75/391 (19%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL
Sbjct: 14 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWL------------- 46
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ +PN F + + +
Sbjct: 47 ---------------NEVQGVPNHGIFAVTFTNKAAGEMRHRTDLQLRNGSRGMWIGTFH 91
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDV---INLGILGFLTERN--ANRFWIMTSN 229
+ H + + D + + + + N
Sbjct: 92 GL----AHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAMELDETKYPPKQLSWWIN 147
Query: 230 PRRLSGKF-YEIFNKPLDDWK--------RFQIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
++ G+ I +P DDW +Q +D + D+
Sbjct: 148 EQKDEGRRPQHIQPEPNDDWTEVRRQVYAAYQERCDRSGLLDFAELLLRAHELLRDTPAL 207
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP 340
+F + +D F N I+ A R + ++G D+ + RG
Sbjct: 208 LAHYRARFREILVDEFQDTNAIQYAFVRVLAGESGNVFVVG-------DDDQAIYGWRGA 260
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
+E++ + K + I+ AN A E +G ++ G
Sbjct: 261 KVENVQRFLK--DFPGAQTVRLEQNYRSSANILGAAN---AVIAHNPERIGKQLWTDSGD 315
Query: 401 KRAVDLEFCRNRRTEL---HVKMADWLEFAS 428
+DL N E + W+
Sbjct: 316 GGPIDLYAAYNEVDEARYVVERARQWVRDGG 346
>gi|303321375|ref|XP_003070682.1| activating signal cointegrator 1 complex subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110378|gb|EER28537.1| activating signal cointegrator 1 complex subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1970
Score = 41.4 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR-PGI 108
+E + N ++F + + G GKT + A L +W PG
Sbjct: 1121 ALEEIYGQRFQFFNPMQTQIFHTLYHTSANVLLGSPTGSGKT-VAAELAMWWAFREKPGS 1179
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1180 KVVYIAPMKALVRER----VQDWRRRLAMPLGLKLVELTGDNTPDTRTIRNADIIITTPE 1235
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1236 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1280
>gi|198450789|ref|XP_001358130.2| GA18736 [Drosophila pseudoobscura pseudoobscura]
gi|198131191|gb|EAL27267.2| GA18736 [Drosophila pseudoobscura pseudoobscura]
Length = 2182
Score = 41.4 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 9/140 (6%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ P V+ +A + +K + ++
Sbjct: 1353 VLLGAPTGSGKTIVAELAIFRALNENPKCKVVYIAPLKALVKERIGDWEKRFHRSSLGLK 1412
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E+ + + + + + R++ + I+ DE
Sbjct: 1413 VVELTGDVTPDIQAIRESQL--IVTTPEKWDGISRSWQTREYV-------QHVSLIVIDE 1463
Query: 200 ASGTPDVINLGILGFLTERN 219
+ I ++ N
Sbjct: 1464 IHLLGEDRGPVIEVIVSRTN 1483
>gi|195143553|ref|XP_002012762.1| GL23759 [Drosophila persimilis]
gi|194101705|gb|EDW23748.1| GL23759 [Drosophila persimilis]
Length = 2182
Score = 41.4 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 9/140 (6%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ P V+ +A + +K + ++
Sbjct: 1353 VLLGAPTGSGKTIVAELAIFRALNENPKCKVVYIAPLKALVKERIGDWEKRFHRSSLGLK 1412
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E+ + + + + + R++ + I+ DE
Sbjct: 1413 VVELTGDVTPDIQAIRESQL--IVTTPEKWDGISRSWQTREYV-------QHVSLIVIDE 1463
Query: 200 ASGTPDVINLGILGFLTERN 219
+ I ++ N
Sbjct: 1464 IHLLGEDRGPVIEVIVSRTN 1483
>gi|71899705|ref|ZP_00681857.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
gi|71730500|gb|EAO32579.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1]
Length = 723
Score = 41.4 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 53/372 (14%), Positives = 101/372 (27%), Gaps = 36/372 (9%)
Query: 62 VDAHCLNSVNNPNPEVFK-GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ H + I AG G GKT + ++WL + + + +
Sbjct: 1 MLDHLNQNQREAVAAAPGHYLILAGAGSGKTRVLTHRIVWL-------NEVNGVPT-HSM 52
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+ + + ++S H++ + +
Sbjct: 53 MAVTFTNKAAGEIQQRIDLQLRHGKRGMWIGTFHSLAHRLLRL----HWNDATLPENFQV 108
Query: 181 PDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
D+ + + + P + + + I P
Sbjct: 109 IDSDDQLRLVKRVIQSLGLNDTLFPPKQAMWWINTQKDEGRRPEHI---QPESHDDWIET 165
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+ +Q +D S D+ +F + ID F
Sbjct: 166 QRRI----YTEYQERCNRAGLVDFSELLLRAHELLRDTPALLTHYRSRFREILIDEFQDT 221
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
N I+ A R D +G D+ + RG +EH+ + K D
Sbjct: 222 NAIQYAFVRVLANDTGHIFAVG-------DDDQAIYGWRGAKVEHVQHFLK-DFPNVQ-- 271
Query: 360 ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL--- 416
L + YR A I+DA N A + +G ++ G ++DL N E
Sbjct: 272 TIRLEQNYRSSANILDAAN--AIIAHNPDRIGKRLWTESGVGESIDLYAAYNEIDEARYI 329
Query: 417 HVKMADWLEFAS 428
+ W+
Sbjct: 330 VERARQWVRDGG 341
>gi|320035817|gb|EFW17757.1| DEAD/DEAH box helicase [Coccidioides posadasii str. Silveira]
Length = 1970
Score = 41.4 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR-PGI 108
+E + N ++F + + G GKT + A L +W PG
Sbjct: 1121 ALEEIYGQRFQFFNPMQTQIFHTLYHTSANVLLGSPTGSGKT-VAAELAMWWAFREKPGS 1179
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1180 KVVYIAPMKALVRER----VQDWRRRLAMPLGLKLVELTGDNTPDTRTIRNADIIITTPE 1235
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1236 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1280
>gi|194015398|ref|ZP_03054014.1| nickel ABC transporter, periplasmic nickel-binding protein
[Bacillus pumilus ATCC 7061]
gi|194012802|gb|EDW22368.1| nickel ABC transporter, periplasmic nickel-binding protein
[Bacillus pumilus ATCC 7061]
Length = 540
Score = 41.4 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 10/116 (8%), Positives = 26/116 (22%), Gaps = 3/116 (2%)
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART-CDYLEMLGYHVYRVLGQK 401
+ L ++ + + T + + +
Sbjct: 380 LEFSMMYDSAESIQKAMAETLQAEWGAIGVGVKLEGVELATQVQRFKANKFDMNFFSNYG 439
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
D N + + + + N LI+ + + S N + S
Sbjct: 440 APYDPHTFMNVVSSDGFGFKEAIS--AYPNKDKLIKEMSEIPSTTNENKRKALYSS 493
>gi|329295805|ref|ZP_08253141.1| phage terminase large subunit [Plautia stali symbiont]
Length = 470
Score = 41.4 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 50/168 (29%), Gaps = 17/168 (10%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGIS--VICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ AG+G GK+ L A + L+ + V A + Q L+ + + P
Sbjct: 3 YVEAGKGSGKSPLAAGIGLYCLVADNEARAEVYAAATKKDQAM-ILFRDAVAMVDQSP-- 59
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
++ + L R S + + H A+I++
Sbjct: 60 ---KLAKRIQKSGGAGKEWNLAFLQAR-----AFFRPISADDGQSGPRPHC----ALIDE 107
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
+ + + R +++T++ + Y+
Sbjct: 108 IHEHKSNQVVEMMRAGTKGRQQALIFMITNSGHNKTSVCYDYHEYGRK 155
>gi|159482689|ref|XP_001699400.1| predicted protein [Chlamydomonas reinhardtii]
gi|158272851|gb|EDO98646.1| predicted protein [Chlamydomonas reinhardtii]
Length = 231
Score = 41.4 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 24/223 (10%), Positives = 56/223 (25%), Gaps = 19/223 (8%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119
+ V + V + G+GKT + A ++L P ++ A ++
Sbjct: 15 QEVREYQFRMVRGAL--FANTLVCLPTGLGKTLIAAVVILNFYRWFPDGKLVFTAPTK-- 70
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYS---DVLHCSLGIDSKHY----STM 172
V + K ++ A + + + +
Sbjct: 71 ------PLVEQQHRACLEKTHIPKGETTVLTAGRAKRGDEAGSAAAESRRELWSSRRVFF 124
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTSNPR 231
C + + I+ DE + + L L + S
Sbjct: 125 CTPQILDNDIANGVCPRDKLVLIVVDECHRVTGNAAPVAALTELRRTGLAVRVVGLSATP 184
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
+ + + + L + + + P H + G
Sbjct: 185 GKNAEAVQEVVRHLGVSRVE-FRSDEDPDVSPHVHNKQVRLGG 226
>gi|148724503|ref|YP_001285469.1| DNA packaging protein [Cyanophage Syn5]
gi|145588148|gb|ABP87967.1| DNA packaging protein [Synechococcus phage Syn5]
Length = 574
Score = 41.4 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
+ ISA RG+GK+ + A VLW++ P ++ ++ S+ +
Sbjct: 42 QHGPKRLQISAFRGVGKSWITAAFVLWVLFVDPDRKIMVISASKERADN 90
>gi|119180556|ref|XP_001241737.1| hypothetical protein CIMG_08900 [Coccidioides immitis RS]
Length = 1970
Score = 41.4 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 22/172 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR-PGI 108
+E + N ++F + + G GKT + A L +W PG
Sbjct: 1121 ALEEIYGQRFQFFNPMQTQIFHTLYHTSANVLLGSPTGSGKT-VAAELAMWWAFREKPGS 1179
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSK 167
V+ +A + ++ V W L + ++ + + + +
Sbjct: 1180 KVVYIAPMKALVRER----VQDWRRRLAMPLGLKLVELTGDNTPDTRTIRNADIIITTPE 1235
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + R++ +I DE + ++ N
Sbjct: 1236 KWDGISRSWQTRGYVR-------QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1280
>gi|213586958|ref|ZP_03368784.1| probable terminase subunit [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 67
Score = 41.4 bits (95), Expect = 0.34, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 17/54 (31%)
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY 392
I W D R + I L ++Y I ID+ G ++
Sbjct: 14 KFRILERHQWRGMDFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYLNVKDFFP 67
>gi|307294548|ref|ZP_07574390.1| phage uncharacterized protein [Sphingobium chlorophenolicum L-1]
gi|306879022|gb|EFN10240.1| phage uncharacterized protein [Sphingobium chlorophenolicum L-1]
Length = 488
Score = 41.4 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 44/486 (9%), Positives = 117/486 (24%), Gaps = 61/486 (12%)
Query: 18 LMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEV 77
++ FS F+ F G +W ++ +E +N
Sbjct: 7 QARDALLRQEFSVFLRFAF-----AEVGGGRDYLHNWHIDAIEHQLDRIRLGLNR----- 56
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN-----SETQLKTTLWAEVSKWL 132
+ ++ K+ + + M R A+ +E + L + W
Sbjct: 57 -RLIVAMAPRHLKSVTVSTAWVAWMLGRDPSLRFICASYGYDLAEKHARDCLRIMSTDWY 115
Query: 133 SLLPN------KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
+ + ++ + S + + + +
Sbjct: 116 QRAFPHVRLSRRTVLDFETTAGGGRLSTSVGGVITGRGANIIVIDDPMKADDALSEARRE 175
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK----FYEIFN 242
+ + + ++ L E + + N L E+
Sbjct: 176 EVREWYFTSLVSRLDDQAKSSIIVVMQRLHEADLAGELLRKGNWEELRLSAIATTDELIP 235
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNII 302
+ + + + + + V + + P + +F+
Sbjct: 236 LIRGRFHQRRTGFPLHP--ARLSLATLKEKQAEEPYVFAAQYQQE-PVSRVGAFVQAQW- 291
Query: 303 EEALNREPCPDPYAPLIMGCDIA---EEGGDNTV-VVLR--RGPVIEHLFDWSKTDLRTT 356
P ++ D A D +V + R +G + +
Sbjct: 292 ---FGTYDEPPRSGTVVQSWDTAVKTTVRSDWSVGITARYHQGRFYILDVFRKRVEFAEL 348
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGY--HVYRVLGQKRAVDLEFCRNRRT 414
+ ++ ++I+ ++G + L + Q A + + +
Sbjct: 349 MRFLCTACREHAVTRLLIEDRSSGQQLIQQLREDAPIGVTLPIPVQPSADKMTRFEAQAS 408
Query: 415 ELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMY 474
+ + + S + + L A+ D +D L
Sbjct: 409 RI--QAGMVVLPRSAPWVADFVAELVGFP------------------NARHDDQADALAQ 448
Query: 475 TFAENP 480
A P
Sbjct: 449 MLAHPP 454
>gi|197303511|ref|ZP_03168550.1| hypothetical protein RUMLAC_02233 [Ruminococcus lactaris ATCC
29176]
gi|197297509|gb|EDY32070.1| hypothetical protein RUMLAC_02233 [Ruminococcus lactaris ATCC
29176]
Length = 542
Score = 41.4 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 34/345 (9%), Positives = 87/345 (25%), Gaps = 30/345 (8%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDA 64
L T L + F+ + K + P WQ + + +
Sbjct: 13 LKNYQPTRFMLPTSHYDKTKADRAVAFIENLCHTKGKWAGKRFWLLP--WQEQLIRDIFG 70
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTT 123
+ N F + + +GK+ L A + L+L+ + + A ++ Q +
Sbjct: 71 IVKSDGNRQFRTAF---VEICKKVGKSELAAAIALYLLYADNEPSAEVYGAAADRQQASI 127
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD- 182
++ + + + P + S + V + + G + + +
Sbjct: 128 VFDVARQMVEMSPA-----LMKRSKLMSATKRIVNYGNAGFYQVLSAEVGSKHGFSISGL 182
Query: 183 TFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF- 241
F H + + + D + +T +R I +
Sbjct: 183 VFDEIHTQPNRQLYDVLTKYSSDARQNPLHFIITTAGNDRHSIAFELHTKAVDILEGRRV 242
Query: 242 --------------NKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR---YGLDSDVTRVEV 284
D+ ++++ +D D +
Sbjct: 243 DPTFYPVVYGLKDDEDWEDEANWYKVNPSLGYTVDIERLRDAYREAKQNPADEITFKWLR 302
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ ++ + + G D++ G
Sbjct: 303 MNMWVSSTTSWIPDAIFMKGSEPIDMRLLEGRDCYAGLDLSSTGD 347
>gi|195501254|ref|XP_002097724.1| GE24317 [Drosophila yakuba]
gi|194183825|gb|EDW97436.1| GE24317 [Drosophila yakuba]
Length = 2183
Score = 41.4 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 9/140 (6%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ P V+ +A + +K + ++
Sbjct: 1355 VLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERISDWEQRFQRSSLGLK 1414
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E+ + + + + + R++ + I+ DE
Sbjct: 1415 VVELTGDVTPDIQAIRESQL--IVTTPEKWDGISRSWQTREYV-------QHVSLIVIDE 1465
Query: 200 ASGTPDVINLGILGFLTERN 219
+ I ++ N
Sbjct: 1466 IHLLGEDRGPVIEVIVSRTN 1485
>gi|104774537|ref|YP_619517.1| putative helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103423618|emb|CAI98564.1| Putative helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
Length = 1044
Score = 41.4 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 28/193 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
LE P ++Q E ++ + A +K + A G+GKT + A+ ++
Sbjct: 314 LETSIRPYNYQQEILDRMQA------EREVYSHYKNLLVAATGVGKTVIAAFDFKRYLAE 367
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
P ++ +A+ + L+ +L Q + L
Sbjct: 368 HPHARLLFVAHRQEILEQSL-------------------QKFREVLNDFNFGHLLVGQYK 408
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
S + Y II DE L+
Sbjct: 409 TDDVSQLFVSIQSFNSEKIADLLPSDYYDFIIIDEFHH---AAAKSYQKLLSHFKPKILL 465
Query: 225 IMTSNPRRLSGKF 237
+T+ P R+ G+
Sbjct: 466 GLTATPDRMEGQD 478
>gi|323477799|gb|ADX83037.1| ATPase of unknown function [Sulfolobus islandicus HVE10/4]
Length = 726
Score = 41.4 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 21/141 (14%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P ++A RG GK+ + +LM+ +++ + + + + V K L
Sbjct: 213 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 271
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
L K+ + + + N G
Sbjct: 272 LNVKYKLTTSKDGKIMKITTGESRVKWV--------------------SPDLARNEEGDL 311
Query: 195 IINDEASGTPDVINLGILGFL 215
I+ DEA+ IL
Sbjct: 312 IVVDEAAAIGMEFLDYILQGW 332
>gi|238620206|ref|YP_002915032.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
islandicus M.16.4]
gi|238381276|gb|ACR42364.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
islandicus M.16.4]
Length = 742
Score = 41.4 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 21/141 (14%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P ++A RG GK+ + +LM+ +++ + + + + V K L
Sbjct: 229 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 287
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
L K+ + + + N G
Sbjct: 288 LNVKYKLTTSKDGKIMKITTGESRVKWV--------------------SPDLARNEEGDL 327
Query: 195 IINDEASGTPDVINLGILGFL 215
I+ DEA+ IL
Sbjct: 328 IVVDEAAAIGMEFLDYILQGW 348
>gi|114564992|ref|YP_752506.1| type III restriction enzyme, res subunit [Shewanella frigidimarina
NCIMB 400]
gi|114336285|gb|ABI73667.1| type III restriction enzyme, res subunit [Shewanella frigidimarina
NCIMB 400]
Length = 1061
Score = 41.4 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 10/136 (7%)
Query: 6 PTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFS-APRSWQLEFMEVVDA 64
+E +LF D + + L G F P + Q E +E +
Sbjct: 287 SYWQSSEFELFK---GDIESKNKLHEALREAKGGYSDDSAFHFDIKPFAHQREILEQL-- 341
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
V + +K + A G GKT ++A+ P + + +A+ + LK L
Sbjct: 342 ----DVERTVHQRYKNLVVAATGTGKTLISAFDFARFYKQHPEANFLFVAHRQEILKQAL 397
Query: 125 WAEVSKWLSLLPNKHW 140
A + + W
Sbjct: 398 SAYRGVLKNNQFGELW 413
>gi|325126369|gb|ADY85699.1| Putative helicase [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 1046
Score = 41.4 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 28/193 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
LE P ++Q E ++ + A +K + A G+GKT + A+ ++
Sbjct: 316 LETSIRPYNYQQEILDRMQA------EREVYSHYKNLLVAATGVGKTVIAAFDFKRYLAE 369
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
P ++ +A+ + L+ +L Q + L
Sbjct: 370 HPHARLLFVAHRQEILEQSL-------------------QKFREVLNDFNFGHLLVGQYK 410
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
S + Y II DE L+
Sbjct: 411 TDDVSQLFVSIQSFNSEKIADLLPSDYYDFIIIDEFHH---AAAKSYQKLLSHFKPKILL 467
Query: 225 IMTSNPRRLSGKF 237
+T+ P R+ G+
Sbjct: 468 GLTATPDRMDGQD 480
>gi|316966601|gb|EFV51154.1| putative Sec63 domain protein [Trichinella spiralis]
Length = 1792
Score = 41.4 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 39/165 (23%), Gaps = 23/165 (13%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
Q + V + N + A G GKT +L L P +
Sbjct: 1073 PIQTQVFRVFYENKDN-----------VFVGAPHGSGKTICAELAILQLFKKNPNGKCVY 1121
Query: 113 LANSETQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+A E L ++ KW L + + + +
Sbjct: 1122 IAPLEP-LCDIVYE---KWELKFGKKMGKSVVILTGETAVDLKLLAKGQVIISTPEKWDV 1177
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
+ R + + + H I D+ +
Sbjct: 1178 LSRRWKQRK-------HVQNVGLYIADDLHFVGGENGPVYEVTCS 1215
>gi|157693822|ref|YP_001488284.1| oligopeptide ABC transporter substrate-binding protein [Bacillus
pumilus SAFR-032]
gi|157682580|gb|ABV63724.1| oligopeptide ABC superfamily ATP binding cassette transporter,
binding protein [Bacillus pumilus SAFR-032]
Length = 540
Score = 41.4 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 10/116 (8%), Positives = 26/116 (22%), Gaps = 3/116 (2%)
Query: 343 EHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART-CDYLEMLGYHVYRVLGQK 401
+ L ++ + + T + + +
Sbjct: 380 LEFSMMYDSAESIQKAMAETLQAEWGAIGVGVKLEGVELATQVQRFKANKFDMNFFSNYG 439
Query: 402 RAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
D N + + + + N LI+ + + S N + S
Sbjct: 440 APYDPHTFMNVVSSDGFGFKEAIS--AYPNKDKLIKEMSEIPSTTNENKRKALYSS 493
>gi|325923795|ref|ZP_08185410.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865]
gi|325545728|gb|EGD16967.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865]
Length = 723
Score = 41.4 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 49/378 (12%), Positives = 101/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 9 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 54
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 55 VTFT---NKAAGEM---------RHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 102
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + S P + + I
Sbjct: 103 PEGFQVMDSDDQLRLVKRVVQSLELDESKYPPKQMSWWINEQKDEGRRPQHIQPEPNDDW 162
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ + +D + D+ +F + +
Sbjct: 163 TEVRRQVYAAYQER-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 215
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 216 DEFQDTNAIQYAFVRVLAGETGHVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 266
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 267 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGDGDPIDLYAAYNEV 323
Query: 414 TEL---HVKMADWLEFAS 428
E + W+
Sbjct: 324 DEARYVVERARQWVRDGG 341
>gi|312881427|ref|ZP_07741222.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122]
gi|309370909|gb|EFP98366.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122]
Length = 724
Score = 41.4 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 53/381 (13%), Positives = 110/381 (28%), Gaps = 40/381 (10%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+D + + AG G GKT + + WLMS ++ + T
Sbjct: 8 IDGLNEKQRAAVAAPIENLLVLAGAGSGKTRVLVHRIAWLMSVEEASPFSIMSVTFT--- 64
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
NK EM+ + + H + P
Sbjct: 65 ---------------NKAAAEMRGRIEELMMGSASGMWNGTFHGLCHRILRAHYLDAKLP 109
Query: 182 DTFVGHHNTY--GMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
+ F + + +A + + S+ + +
Sbjct: 110 EDFQIIDSDDQQRLLRRLIKAQNLDEKQWPARQVSWWINGKKDEGLRPSHIDTFNDPVTQ 169
Query: 240 IFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPL 299
+ + ++ +Q +D + D+ R +F +D F
Sbjct: 170 TYLQL---YRAYQEACDRAGLVDFAEILLRAQELLRDNKHIRQHYQTRFKHILVDEFQDT 226
Query: 300 NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNK 359
N I+ A R +I+G D+ + RG +E++ + +
Sbjct: 227 NNIQYAWLRLMAGPDTHVMIVG-------DDDQSIYGWRGAKVENIEKF----TVEFPSV 275
Query: 360 -ISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE--- 415
L + YR I+DA+N A + E +G ++ + + N E
Sbjct: 276 NTIRLEQNYRSTKTILDASN--ALIANNTERMGKELWTDGSAGEPISVYSAYNELDEARF 333
Query: 416 LHVKMADWLEFASLINHSGLI 436
K+ +W E ++ + ++
Sbjct: 334 AVSKIKEWQEKGGVLTDTAML 354
>gi|307318836|ref|ZP_07598268.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
gi|306895557|gb|EFN26311.1| protein of unknown function DUF264 [Sinorhizobium meliloti AK83]
Length = 477
Score = 41.4 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 55/441 (12%), Positives = 102/441 (23%), Gaps = 57/441 (12%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL---------WL 101
P + Q EF A AG +GKT A W
Sbjct: 43 PYAKQREFHAAGAAFRERLFM------------AGNQLGKTLAGAAEAAMHLTGRYPDWW 90
Query: 102 MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ----SLSLHPAPWYSDV 157
R ++ LA SE+ V + L P ++ +
Sbjct: 91 QGRRFDRPIVMLAGSES--YELTRDGVQRLLIGPPLHEEEWGTGFLPKAAIKATTRRAGA 148
Query: 158 LHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE 217
+ +H S T + + + + + DV GI
Sbjct: 149 SGALDSVTVRHVSGRASTLLFKAYEQGRAKWQANTVDYVWFDEEPPEDVYFEGITRTNAT 208
Query: 218 RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS 277
R A + + R LS + D + E P + +I Y
Sbjct: 209 RGA--IAVTFTPLRGLSAVVARYLMEKSPDRAVITMTIEDAEHYTPQERQRVIDSYPAHE 266
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
R P P+ E + I G D + V
Sbjct: 267 REARTR---GVPALGSGRIFPVT-EESIRIDPFEIPKHWVQIGGLDFGWDHPFAAVGCAW 322
Query: 338 RG----PVIEHLFDWSKTDLRTTNNKISGLVEKY---RPDAIIIDANNTGARTCDYLEML 390
+ ++ + + P + +G +
Sbjct: 323 DRDADVFHVTKIYREREATPIIHAAALKPWGAAMPWAWPHDGLQHDKGSGEQLAAQYRAQ 382
Query: 391 GYHVYRVL-------GQKRAVDLEFCRNRRTELHVKMA---DWLEFASLIN--HSGLIQN 438
G + A + + ++ + +W E L + +++
Sbjct: 383 GLALLPERATFDDGTNGVEAGLSDMLQRMQSGRWKVFSTCTEWFEEFRLYHRKDGRIVKE 442
Query: 439 LKSLKSFIVPNTGELAIESKR 459
+ + A+ KR
Sbjct: 443 -----RDDLISASRYALMMKR 458
>gi|332027148|gb|EGI67241.1| Activating signal cointegrator 1 complex subunit 3 [Acromyrmex
echinatior]
Length = 2120
Score = 41.4 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 15/141 (10%), Positives = 38/141 (26%), Gaps = 12/141 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + P V+ +A + ++ ++ W L +
Sbjct: 1310 VLLGAPTGSGKTIAAEIAMFRVFKQNPDQKVVYIAPLKALVRER----INDWKERLEERL 1365
Query: 140 WFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ + + + + R++ I+ D
Sbjct: 1366 GKRVVELTGDVSPDIKMIASASVIVTTPEKWDGISRSWQTRSYV-------KKVALIVID 1418
Query: 199 EASGTPDVINLGILGFLTERN 219
E + + ++ N
Sbjct: 1419 EIHLLGEDRGPVLEVIISRTN 1439
>gi|289666094|ref|ZP_06487675.1| DNA-dependent helicase II [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 723
Score = 41.4 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 49/378 (12%), Positives = 101/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 9 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 54
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 55 VTFT---NKAAGEM---------RHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 102
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + S P + + I
Sbjct: 103 PEGFQVMDSDDQLRLVKRVVQSLELDESKYPPKQMSWWINEQKDEGRRPQHIQPEPNDDW 162
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ + +D + D+ +F + +
Sbjct: 163 TEVRRQVYAAYQER-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 215
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 216 DEFQDTNAIQYAFVRVLAGESGNVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 266
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 267 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGDGDPIDLYAAYNEV 323
Query: 414 TEL---HVKMADWLEFAS 428
E + W+
Sbjct: 324 DEARYVVERARQWVRDGG 341
>gi|167757877|ref|ZP_02430004.1| hypothetical protein CLOSCI_00208 [Clostridium scindens ATCC 35704]
gi|167664531|gb|EDS08661.1| hypothetical protein CLOSCI_00208 [Clostridium scindens ATCC 35704]
Length = 558
Score = 41.4 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 47/352 (13%), Positives = 92/352 (26%), Gaps = 40/352 (11%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFF----PWGEKGTPLEGFSAPRSWQLEF 58
R+L T+ K D ++S E+ F+ W K L WQ +
Sbjct: 27 RKLKKYKPTKFKAKDSVYSQEMADYAVAFIECLCHTKGTWAGKPFELI------DWQEQI 80
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANS 116
+ + + + I + GK+ L A + L L V A
Sbjct: 81 IRDLFGTLKPNGYR---QFNTAYIEIPKKQGKSELAAAVALLLCCGDGEERAEVYGCAAD 137
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
Q + ++ + + + P ++ L+ Y + ++ YS
Sbjct: 138 RQQA-SIVFEVAADMVRMCPA-LSKRVKILASQKRIIYQPTNSFYQVLSAEAYSKHGFNI 195
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
F H + + G+ D + +T + I ++
Sbjct: 196 ---HGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTNSICYETHQKAKDI 252
Query: 237 FYEIFNKP-----------LDDWKRFQIDTRTVEGID--------PSFHEGIIARYGLDS 277
P DDW ++ + +D + E G
Sbjct: 253 LEGRKIDPTFYPVIYGAEESDDWTDPKVWKKANPSLDITVGIDKVKAACESAKQNPGE-E 311
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ R Q+ +Q + A G D++
Sbjct: 312 NSFRQLRLNQWVKQAVRWMPMEKWDACAFPVSEDDLEGRICYGGLDLSSTTD 363
>gi|227827980|ref|YP_002829760.1| hypothetical protein M1425_1713 [Sulfolobus islandicus M.14.25]
gi|227459776|gb|ACP38462.1| protein of unknown function DUF699 ATPase putative [Sulfolobus
islandicus M.14.25]
Length = 726
Score = 41.4 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 21/141 (14%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P ++A RG GK+ + +LM+ +++ + + + + V K L
Sbjct: 213 PGKRILVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 271
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
L K+ + + + N G
Sbjct: 272 LNVKYKLTTSKDGKIMKITTGESRVKWV--------------------SPDLARNEEGDL 311
Query: 195 IINDEASGTPDVINLGILGFL 215
I+ DEA+ IL
Sbjct: 312 IVVDEAAAIGMEFLDYILQGW 332
>gi|228955836|ref|ZP_04117810.1| Terminase [Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228803845|gb|EEM50490.1| Terminase [Bacillus thuringiensis serovar kurstaki str. T03a001]
Length = 543
Score = 41.0 bits (94), Expect = 0.40, Method: Composition-based stats.
Identities = 52/337 (15%), Positives = 87/337 (25%), Gaps = 35/337 (10%)
Query: 16 FDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNP 75
DL + DE+ NF GEK + + +Q + V +
Sbjct: 22 DDLYFDDEMIEDCINF-------GEKW-----YFPMQPFQKFLIAFVFLFYKKNGRVFYR 69
Query: 76 EVFKGAISAGRGIGKTTLNAWLVLWLMSTR---PGISVICLANSETQLKTTLWAEVSKWL 132
+ GRG GK L + ++ +L+S P ++ +ANSE Q KT+
Sbjct: 70 KFLWML---GRGGGKNGLISVIIHFLISELHGIPEYNISVVANSEEQAKTSPDEVHKCVK 126
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC-----------RTYSEERP 181
K F+ S + + D+K
Sbjct: 127 KNEVLKRAFKTTLTQTVSKATESVLKFRTSNGDTKDGLRDGAVVFDEIHQYESNKDVRVH 186
Query: 182 DTFVGHHNTYGMAIINDEASGTP---DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
+ +G I + D + L +
Sbjct: 187 ISGLGKKKNPREFYIGTDGYVRDGFLDKQKEKAMKVLNGEARPNAVFPFICKLNDETEVD 246
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSD--VTRVEVCGQFPQQDIDSF 296
+I N L + + + EG+ + E S+ + S
Sbjct: 247 DIDNWELANPMLSKPLSEYAEGLLETIKEEYEDLEDDPSNREEFMTKRMNLPVTDLERSV 306
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
I A NRE I D A +
Sbjct: 307 AKWEEI-AATNRELPDLRGHECIGALDYASIRDFASC 342
>gi|153006821|ref|YP_001381146.1| type III restriction protein res subunit [Anaeromyxobacter sp.
Fw109-5]
gi|152030394|gb|ABS28162.1| type III restriction protein res subunit [Anaeromyxobacter sp.
Fw109-5]
Length = 1418
Score = 41.0 bits (94), Expect = 0.40, Method: Composition-based stats.
Identities = 55/413 (13%), Positives = 108/413 (26%), Gaps = 48/413 (11%)
Query: 37 PWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
P + PL P Q + ++ + A + + + G+GKT L A+
Sbjct: 317 PGETEAEPLTAAPDPHEIQRDALDALAATRADGE-------KRALVVMATGLGKTLLAAY 369
Query: 97 LVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD 156
ST + +L + L +
Sbjct: 370 DADAFRSTLDHPIRVLFIAHRRELLVQAATTFRRVLRGAMPDLRVGWFA----------- 418
Query: 157 VLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
L D + RP+ ++ DE L+
Sbjct: 419 EDRSELEAD----IVVASVQKLSRPENLERLAAERFDYVVVDE---VHHAEAPSYRRILS 471
Query: 217 ERNANRFWIMTSNPRR-LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE-GIIARYG 274
+ +T+ P R G +F+ L + + ++ Y
Sbjct: 472 RIDPGFLLGLTATPDRADEGDVLGLFDDNLPFRADLGVGIEAKRLVPFAYFGLKDTVDYS 531
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVV 334
D+ R P++ ++ +E + L+ C I
Sbjct: 532 HDNIPWRNRR--FDPKRLEEAVQTQERMERLWSALGEHGGMRTLVFCCSIP-HAEFAKRW 588
Query: 335 VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART----------- 383
+ RG + + +D R+ ++ L +D N G
Sbjct: 589 LEGRGVRVRAVHSDPGSDDRSRA--LADLAAGRIDAVCAVDLFNEGVDVPLVDRVVMLRP 646
Query: 384 ----CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH 432
+L+ LG + G++R ++F N R L ++ L
Sbjct: 647 TESPVVFLQQLGRGLRIAEGKERLTVIDFVGNHRVFL-DRVRTLLSLGDARPD 698
>gi|262403670|ref|ZP_06080228.1| phage protein [Vibrio sp. RC586]
gi|262350174|gb|EEY99309.1| phage protein [Vibrio sp. RC586]
Length = 550
Score = 41.0 bits (94), Expect = 0.41, Method: Composition-based stats.
Identities = 34/308 (11%), Positives = 71/308 (23%), Gaps = 19/308 (6%)
Query: 85 GRGIGKTTLNAWLV-LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
R GKTT N + LWL PG ++ S K + A +
Sbjct: 130 PRDHGKTTRNTQAMPLWLALNHPGSFIVICGASADSAKEMMDAIKDDLEDNELILDDYGE 189
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + S+ + + + E+
Sbjct: 190 QRGNTWTKRKIKLANGSSIVAVGRGQRLRGIK---NKYQRPTHIICDDLLDDKEVESPTL 246
Query: 204 PDVINLGILGFLTERNANRFWIM---TSNPRRLSGKFYEIFNKPL-DDWKRFQIDTRTV- 258
+ I+ +P L + +W + T
Sbjct: 247 RRQAERWFKRVIMNLGKGALTIIANTIMHPDDLPSRLLNQIEDGRLPNWLGLRFSAITPS 306
Query: 259 --EGIDPSF-HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--- 312
+ + + + E + P D D+ + E
Sbjct: 307 GRPLFPSRWSLQDLENKRIASGSAWWTEWMNR-PIADEDADFKEDWFVYFKPYELDLRDC 365
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT---DLRTTNNKISGLVEKYRP 369
+ + + VV R + ++K +I + ++RP
Sbjct: 366 TIGMAVDPATGLKKGDWSFIAVVARHKITMVDHVLFAKGWKESDLQFAQRIVDVYLQHRP 425
Query: 370 DAIIIDAN 377
++ +
Sbjct: 426 SFVMFETV 433
>gi|156839586|ref|XP_001643482.1| hypothetical protein Kpol_489p5 [Vanderwaltozyma polyspora DSM
70294]
gi|156114095|gb|EDO15624.1| hypothetical protein Kpol_489p5 [Vanderwaltozyma polyspora DSM
70294]
Length = 1048
Score = 41.0 bits (94), Expect = 0.41, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 28/170 (16%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR----PGISV 110
Q E + N IS+ G GKT L +L L+ I +
Sbjct: 2 QSEAFRYIYDTDEN-----------CVISSPTGSGKTVLFELAILRLLRDNNYSADNIKI 50
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ +A + K+ + + W S N + S + + ++
Sbjct: 51 LYIAPT----KSLCYEQSKNWSSKFLNLSVGMLTSDTSYS--------ETDKVRNANIII 98
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAII-NDEASGTPDVINLGILGFLTERN 219
T + + +I DE + + LT N
Sbjct: 99 TTPEKWDLLTRKWEDYKRLFELVKLILVDEIHMLKERRGSALEVVLTRMN 148
>gi|315923207|ref|ZP_07919447.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313697082|gb|EFS33917.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 471
Score = 41.0 bits (94), Expect = 0.42, Method: Composition-based stats.
Identities = 46/361 (12%), Positives = 95/361 (26%), Gaps = 51/361 (14%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF-KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI--CLA 114
F++ V + + + + + A+S GK+ +++ + W+ P SV+ C +
Sbjct: 37 FLKKVAEAFMRVYESYSASIIYRLAVSMPPRAGKSYISSLFIAWMYGHFPEESVMRNCCS 96
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
++ + + L D ++ +
Sbjct: 97 DTL-------------------YNKLSYDTRDVVKSRRFKEIFPDIHLKGDKQNV----K 133
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEAS--GTPDVINLGILGFLTERNANRFW-------- 224
++S E G +I AS D + + L++ N + W
Sbjct: 134 SWSVEGARQVSYFGGGVGGTVIGFGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHD 193
Query: 225 -------IMTSNPRRLSGKFYEIFNKPLDDWK-RFQIDTRTVEGI----DPSFHEGIIAR 272
M R S + + +I D E
Sbjct: 194 SRIEGSCCMIDIGTRWSSNDVLGRMEEAGKYNEIIRIAALDENDETFCADVHTTEYYKEL 253
Query: 273 YGL-DSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
D + E + + F +++ L P L + D
Sbjct: 254 RSETDESIWMAEYMQEPFEAKGLLFPKSSLMRFKLADIAGKKPDGTLGACDTADKGDDDF 313
Query: 332 TV-VVLRRGPVIEHLFDWSKTDLRTTNN-KISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
GP D +++ +V D + I++NN G +
Sbjct: 314 CAPFAKVFGPKYFITDILFTKDPVEVTEPRLAQMVIDTECDQLRIESNNGGRIFAINVRK 373
Query: 390 L 390
L
Sbjct: 374 L 374
>gi|293611312|ref|ZP_06693609.1| predicted protein [Acinetobacter sp. SH024]
gi|292826323|gb|EFF84691.1| predicted protein [Acinetobacter sp. SH024]
Length = 1043
Score = 41.0 bits (94), Expect = 0.42, Method: Composition-based stats.
Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 21/205 (10%)
Query: 9 PETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLN 68
PE L + SD + +F G+ +E P + E + +V ++
Sbjct: 204 PEQPLSLVTELKSDINQKETYSF-RGRSGTEGFGSKVEELYFPLPYNKEQITIVQNLLIS 262
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
S + G GKT A ++ ++ G V+ A LKT
Sbjct: 263 SG---------VVVQGPPGTGKTHSIANIICHYLAN--GKKVLVTAQQSHVLKTV----- 306
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVL-HCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+P++ + S + + L + +
Sbjct: 307 ---HEKIPDELKPLVVSRIGSSKESKNQLESSIDLIVQKITQMNVAEVRKTIEVLKHQID 363
Query: 188 HNTYGMAIINDEASGTPDVINLGIL 212
HN + MA+I+ E + I
Sbjct: 364 HNHHEMALIDREIYNFAEKHYQNIE 388
>gi|254476244|ref|ZP_05089630.1| conserved hypothetical protein [Ruegeria sp. R11]
gi|214030487|gb|EEB71322.1| conserved hypothetical protein [Ruegeria sp. R11]
Length = 1106
Score = 41.0 bits (94), Expect = 0.42, Method: Composition-based stats.
Identities = 32/214 (14%), Positives = 56/214 (26%), Gaps = 24/214 (11%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E ++ V + + + G GKT + A +L R G + +NS
Sbjct: 706 EGLDAVAGTIAAVRDLDCSVLP---VQGPPGTGKTYVTARAIL--ALLREGKRIGVASNS 760
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP------WYSDVLHCSLGIDSKHYS 170
+K L + P+ S ++P + L +
Sbjct: 761 HEAVKNVLLGVLEALAPEDPDIEILHKLSDDIYPDDCPIARVTDNGRAEEGLHLVGGTVF 820
Query: 171 TMCRTYSEERPDTF----VGHHNTYGMAIINDEASGT-----PDVINLGILGF----LTE 217
R + +R D G + I A P + I G L
Sbjct: 821 FFAREANRQRFDYIFVDEAGQVGLANLVAIATAARNLVLVGDPQQLPQVIQGSHPAPLDL 880
Query: 218 RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+G F ++ + D F
Sbjct: 881 SGLEYLLNGAPTIPPDAGVFLDVSRRMHPDICGF 914
>gi|294666234|ref|ZP_06731487.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292604007|gb|EFF47405.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 728
Score = 41.0 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 49/378 (12%), Positives = 101/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 14 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 60 VTFT---NKAAGEM---------RHRTDLQLRNGSRWIWIGTFHGLAHRLLRLHWQDARL 107
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + S P + + I
Sbjct: 108 PEGFQVMDSDDQLRLVKRVVQALELDESKYPPKQMSWWINEQKDEGRRPQHIQPEPNDDW 167
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ + +D + D+ +F + +
Sbjct: 168 TEVRRQVYAAYQER-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 220
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 221 DEFQDTNAIQYAFVRVLAGESGNVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 271
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 272 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGDGDPIDLYAAYNEV 328
Query: 414 TEL---HVKMADWLEFAS 428
E + W+
Sbjct: 329 DEARYVVERARQWVRDGG 346
>gi|169786937|ref|YP_001708749.1| putative DNA helicase [Acinetobacter baumannii AYE]
gi|169147098|emb|CAM84758.1| putative DNA helicase [Acinetobacter baumannii AYE]
Length = 1579
Score = 41.0 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 21/205 (10%)
Query: 9 PETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLN 68
PE L + SD + +F G+ +E P + E + +V ++
Sbjct: 402 PEQPLSLVTELKSDINQKETYSF-RGRSGTEGFGSKVEELYFPLPYNKEQITIVQNLLIS 460
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
S + G GKT A ++ ++ G V+ A LKT
Sbjct: 461 SG---------VVVQGPPGTGKTHSIANIICHYLAN--GKKVLVTAQQSHVLKTV----- 504
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVL-HCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
+P++ + S + + L + +
Sbjct: 505 ---HEKIPDELKPLVVSRIGSSKESKNQLESSIDLIVQKITQMNVAEVRKTIEVLKHQID 561
Query: 188 HNTYGMAIINDEASGTPDVINLGIL 212
HN + MA+I+ E + I
Sbjct: 562 HNHHEMALIDREIYNFAEKHYQNIE 586
>gi|325916758|ref|ZP_08179012.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC
35937]
gi|325537012|gb|EGD08754.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC
35937]
Length = 723
Score = 41.0 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 49/378 (12%), Positives = 101/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 9 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 54
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 55 VTFT---NKAAGEM---------RHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 102
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + S P + + I
Sbjct: 103 PEGFQVMDSDDQLRLVKRVVQSLELDESKYPPKQMSWWINEQKDEGRRPQHIQPEPNDDW 162
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ + +D + D+ +F + +
Sbjct: 163 TEVRRQVYAAYQER-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 215
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 216 DEFQDTNAIQYAFVRVLAGETGHVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 266
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 267 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGDGDPIDLYAAYNEV 323
Query: 414 TE---LHVKMADWLEFAS 428
E + W+
Sbjct: 324 DEARYAVERARQWVRDGG 341
>gi|217964657|ref|YP_002350335.1| phage terminase, large subunit [Listeria monocytogenes HCC23]
gi|217333927|gb|ACK39721.1| putative phage terminase, large subunit [Listeria monocytogenes
HCC23]
gi|307570778|emb|CAR83957.1| phage terminase large subunit [Listeria monocytogenes L99]
Length = 546
Score = 41.0 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 53/355 (14%), Positives = 99/355 (27%), Gaps = 46/355 (12%)
Query: 15 LFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
+ D ++ DE ++ NF+ W + +Q V +
Sbjct: 38 IRDDLYFDETRID--NFIRFAEKW---------YYKLEPFQKFIAAFVFLYRKKDDEVHF 86
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---VICLANSETQLKTTLWAEVSKW 131
E+F ++ GRG GK + L + +S GI + +ANSE Q T+ + +V
Sbjct: 87 KEIF---LTFGRGGGKNGFISVLAHFFISPLHGIKRYSISIVANSEEQAMTS-FDDVFNC 142
Query: 132 LSLLP-------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP--- 181
+ + ++ S+ G D+ Y ++
Sbjct: 143 IKDNKLTGSFKNARAKITGKATDSILKARTSNADTKDGGRDACVIFDEVHRYENQKTVDV 202
Query: 182 -DTFVGHHNTYGMAIINDEA---SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKF 237
+ +G + I + G D + L + + + S
Sbjct: 203 FTSGLGKVPNSRIFYIGTDGFVREGFNDKLKERTEAILKNESDDDRFFGFICKLDNS--- 259
Query: 238 YEIFNKPLDDWKRFQIDTRTVEG-IDPSFHEGIIARY------GLDSDVTRVEVCGQFPQ 290
K W++ G + +E + +Y + +
Sbjct: 260 --EEVKDEKFWEKANPMLSQPRGAYAETLYEEVKRQYKNLQFNPSAREEFMTKRMNLPEV 317
Query: 291 QDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV-VVLRRGPVIEH 344
P I A NRE I D A V ++ R G
Sbjct: 318 DLEKVVAPWKDI-LATNREMPELRNRACIGAFDYASVKDFAAVGLLFRVGDDYIW 371
>gi|195570614|ref|XP_002103302.1| GD19029 [Drosophila simulans]
gi|194199229|gb|EDX12805.1| GD19029 [Drosophila simulans]
Length = 2182
Score = 41.0 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 9/140 (6%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ P V+ +A + +K + ++
Sbjct: 1354 VLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLK 1413
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E+ + + + + + R++ + I+ DE
Sbjct: 1414 VVELTGDVTPDIQAIRESQL--IVTTPEKWDGISRSWQTREYV-------QHVSLIVIDE 1464
Query: 200 ASGTPDVINLGILGFLTERN 219
+ I ++ N
Sbjct: 1465 IHLLGEDRGPVIEVIVSRTN 1484
>gi|195328689|ref|XP_002031047.1| GM24241 [Drosophila sechellia]
gi|194119990|gb|EDW42033.1| GM24241 [Drosophila sechellia]
Length = 2181
Score = 41.0 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 9/140 (6%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ P V+ +A + +K + ++
Sbjct: 1353 VLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLK 1412
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E+ + + + + + R++ + I+ DE
Sbjct: 1413 VVELTGDVTPDIQAIRESQL--IVTTPEKWDGISRSWQTREYV-------QHVSLIVIDE 1463
Query: 200 ASGTPDVINLGILGFLTERN 219
+ I ++ N
Sbjct: 1464 IHLLGEDRGPVIEVIVSRTN 1483
>gi|148750837|ref|YP_001285878.1| putative terminase large subunit [Lactobacillus phage LL-H]
gi|134105522|gb|ABO60921.1| putative terminase large subunit [Lactobacillus phage LL-H]
Length = 433
Score = 41.0 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 41/403 (10%), Positives = 112/403 (27%), Gaps = 51/403 (12%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS----TRPGISVIC 112
+ ++ H N P GRG K+++ + +++ M +V+C
Sbjct: 4 RLTDQINPHFRKLWNTRRPY---VIAKGGRGSFKSSVISIKLVFDMIKAINAGHKANVVC 60
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+ + + L+ +++ ++ + +L F ++ L +
Sbjct: 61 IRENASYLRDSVYNQILWAMDILKVSDQFRTRASPLKI-----------------EHIQS 103
Query: 173 CRTYSEERPDTFVGHHNTY---GMAIINDEASGTPD-VINLGILGFLTERNANR-----F 223
T+ + + + +A+ +E + + + + +
Sbjct: 104 GSTFYFYGANDPMKLKSNNVGDIIAVWFEEFANLKNIDVFDQAVPTFIRQKPAWLGQAKV 163
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR----TVEGIDPSFHEGIIARYGLDSDV 279
+ + P+ E + +D F + + + I + D D
Sbjct: 164 YCSYNPPKNPYLWINEWITQKENDPNFFIDHSTYLDDKLGFTTKQQLDMIDSYKENDFDY 223
Query: 280 TRVEVCGQFPQQDIDSF--IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV---- 333
R G+ + + + ++ + + D Y + G +++
Sbjct: 224 YRWLYLGEVVGLGTNVYNMDLFHPVDSIPDGDYITDVYYGMDAGHEVSATTVVAVGLTRK 283
Query: 334 --VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLG 391
V L +K I +++ T L+
Sbjct: 284 GDVYLLDTYYYSPAGKTNKKPPSELAKDIHDFIDQVTEKYDKYPTRLTMDSAEGALDNQY 343
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSG 434
Y +Y + K E ++ ++ D L +
Sbjct: 344 YSMYGIRWHKVHKLKEV------DMIDRVQDLLAQGRVYYLDQ 380
>gi|15291373|gb|AAK92955.1| GH18520p [Drosophila melanogaster]
Length = 774
Score = 41.0 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 9/140 (6%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ P V+ +A + +K + ++
Sbjct: 267 VLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLK 326
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E+ + + + + + R++ + I+ DE
Sbjct: 327 VVELTGDVTPDIQAIRESQL--IVTTPEKWDGISRSWQTREYV-------QHVSLIVIDE 377
Query: 200 ASGTPDVINLGILGFLTERN 219
+ I ++ N
Sbjct: 378 IHLLGEDRGPVIEVIVSRTN 397
>gi|24647182|ref|NP_650472.2| CG5205 [Drosophila melanogaster]
gi|23171378|gb|AAF55204.2| CG5205 [Drosophila melanogaster]
Length = 2183
Score = 41.0 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 9/140 (6%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ P V+ +A + +K + ++
Sbjct: 1355 VLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPLKALVKERIADWEQRFQRSSLGLK 1414
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E+ + + + + + R++ + I+ DE
Sbjct: 1415 VVELTGDVTPDIQAIRESQL--IVTTPEKWDGISRSWQTREYV-------QHVSLIVIDE 1465
Query: 200 ASGTPDVINLGILGFLTERN 219
+ I ++ N
Sbjct: 1466 IHLLGEDRGPVIEVIVSRTN 1485
>gi|50302989|ref|XP_451432.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640563|emb|CAH03020.1| KLLA0A09889p [Kluyveromyces lactis]
Length = 1960
Score = 41.0 bits (94), Expect = 0.44, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 12/139 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ + G GKT + A L +W PG V+ +A + ++ + K
Sbjct: 1155 VGSPTGSGKT-VVAELAIWHAFRDYPGSKVVYIAPMKALVRERV---------NDWRKRI 1204
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + S + D+ T + + II DE
Sbjct: 1205 TPVTGDRIVELTGDSVPDPQDIK-DATIVITTPEKFDGISRNWQTRKFVQNVSLIIMDEI 1263
Query: 201 SGTPDVINLGILGFLTERN 219
+ ++ N
Sbjct: 1264 HLLASDRGPILEMIVSRMN 1282
>gi|323475068|gb|ADX85674.1| ATPase of unknown function [Sulfolobus islandicus REY15A]
Length = 726
Score = 41.0 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 21/135 (15%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
P ++A RG GK+ + +LM+ +++ + + + + V K L
Sbjct: 213 PGKRVLVVTAARGRGKSASIGLFLSYLMTEEKFGNILVTSPTYYSSQEI-FNFVIKGLDA 271
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
L K+ + + + N G
Sbjct: 272 LNVKYKLTTSKDGKIMKITTGESRVKWV--------------------SPDLARNEEGDL 311
Query: 195 IINDEASGTPDVINL 209
I+ DEA+
Sbjct: 312 IVVDEAAAIGMEFLD 326
>gi|304413632|ref|ZP_07395076.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella
insecticola LSR1]
gi|304283723|gb|EFL92117.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella
insecticola LSR1]
Length = 715
Score = 41.0 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 49/381 (12%), Positives = 100/381 (26%), Gaps = 49/381 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GK+ + + WL+S +A
Sbjct: 12 QREAVATRYKHLL--------------VLAGAGSGKSRVLVHRIAWLLSQEDISPFSIIA 57
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T AE+ + L H + + H+
Sbjct: 58 VTFT---NKSAAEMRHRIENLGRAHNGMWVGTFHGL----------AHRLLRIHHLAANL 104
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ D+ + ++ + + N
Sbjct: 105 PQDFQVLDSDDQLRFVKRII----KSLDLDEKKWSPRQAISYINGKKDMMLRPENIENYG 160
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
I+ + ++ + +D + L++ +F +D
Sbjct: 161 NPVENIWLRI---YQAYHDACHRTGSVDFAELLLRAHELWLNNPCILQHYRQRFSHILVD 217
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR 354
F N I+ A D +I+G D+ + RG +E++ +
Sbjct: 218 EFQDTNKIQYAWIHLLAGDQATVMIVG-------DDDQSIYGWRGAQVENI--QLFLNDF 268
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRT 414
T + I+ AN+ + +G +++ A+ L N
Sbjct: 269 TGAETLRLEQNYRSTHHILTAANSL---IAHNTKRMGKNLWTKRATGEAISLYSAINELD 325
Query: 415 EL---HVKMADWLEFASLINH 432
E K+ W L+
Sbjct: 326 EARFVVSKIKTWQSQGGLLKD 346
>gi|260174972|ref|ZP_05761384.1| hypothetical protein BacD2_24155 [Bacteroides sp. D2]
Length = 481
Score = 41.0 bits (94), Expect = 0.46, Method: Composition-based stats.
Identities = 42/344 (12%), Positives = 98/344 (28%), Gaps = 17/344 (4%)
Query: 58 FMEVVDAHCLNSVNNPNPEVF-KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI--CLA 114
F++ V + + + + + A+S GK+ +++ + W+ P SV+ C +
Sbjct: 47 FLKKVAEAFMRVYESYSASIIYRLAVSMPPRAGKSYISSLFIAWMYGHFPEESVMRNCCS 106
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH------CSLGIDSKH 168
++ + +V K ++ + W + +G
Sbjct: 107 DTLYNKLSYDTRDVVKSRRFKEIFPDIHLKGDKQNVKSWSVEGARQVSYFGGGVGGTVIG 166
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ +++ + + + GT D G + +
Sbjct: 167 FGASMLAMTDDLYKSLEDALSDNNNEKVWSWKQGTHDSRIEG-SCCMIDIGTRWSSNDVL 225
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
+GK+ EI D V +++ + + D + E +
Sbjct: 226 GRMEEAGKYNEIIRIAALDENDETF-CADVHTT--EYYKELRSET--DESIWMAEYMQEP 280
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV-VVLRRGPVIEHLFD 347
+ F +++ L P L + D GP
Sbjct: 281 FEAKGLLFPKSSLMRFKLADIAGKKPDGTLGACDTADKGDDDFCAPFAKVFGPKYFITDI 340
Query: 348 WSKTDLRTTNN-KISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
D +++ +V D + I++NN G + L
Sbjct: 341 LFTKDPVEVTEPRLAQMVIDTECDQLRIESNNGGRIFAINVRKL 384
>gi|308449036|ref|XP_003087834.1| hypothetical protein CRE_16583 [Caenorhabditis remanei]
gi|308252534|gb|EFO96486.1| hypothetical protein CRE_16583 [Caenorhabditis remanei]
Length = 411
Score = 41.0 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 45/180 (25%), Gaps = 18/180 (10%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + A + + IS R +GKT ++ L P ++VI
Sbjct: 47 DEWQAGLGRAMLA--KRASGLYAAGIGGIIISICRQVGKTFTIGSIIFALCIIFPKLTVI 104
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ T +Q + + +
Sbjct: 105 WTAHHSRTSNETF----------------ESLQGFAQKRKVAPHIRQIRRVNGQQQITFK 148
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
++ G ++ DEA + ++ +M + PR
Sbjct: 149 NGSRIMFGARESGFGRGFAGVDVVVADEAQILGNKALEDMVPATNASKNPLIILMGTPPR 208
>gi|297587082|ref|ZP_06945727.1| phage terminase [Finegoldia magna ATCC 53516]
gi|297575063|gb|EFH93782.1| phage terminase [Finegoldia magna ATCC 53516]
Length = 529
Score = 41.0 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 78/298 (26%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ E + + ++ + I + +GK+ L A + L L V
Sbjct: 46 DWQEEIIRDLFGIVKDTGYR---QFNTAYIEIPKKMGKSELAAAVALLLTCGDGEERAEV 102
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q T ++ + + + P ++ + ++ + L ++
Sbjct: 103 YGCAADRQQA-TIVFDVAADMVRMSPALSKRVKILASQKRMIYKPTNSFYQVLSAEA--- 158
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
++ F H + + G+ D + +T + I
Sbjct: 159 -YSKHGFNIHGV-VFDELHTQPNRKLFDVMTKGSGDARTQPLYFLITTAGTDTKSICYET 216
Query: 230 PRRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVEGIDPSF-HEGIIA------ 271
++ P DDW ++ + + + E +
Sbjct: 217 HQKAVDILEGRKTDPTFYPVIYGADREDDWTDEKVWHKANPSLGITVPIEKVRQACESAK 276
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + + R Q+ +Q I G D++
Sbjct: 277 QNPTEENAFRQLRLNQWVKQAIRWMPMEKWDLCNFAVNEEELKGRVCYGGLDLSSTTD 334
>gi|304439214|ref|ZP_07399132.1| phage terminase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372346|gb|EFM25934.1| phage terminase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 529
Score = 41.0 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 78/298 (26%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ E + + ++ + I + +GK+ L A + L L V
Sbjct: 46 DWQEEIIRDLFGIVKDTGYR---QFNTAYIEIPKKMGKSELAAAVALLLTCGDGEERAEV 102
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q T ++ + + + P ++ + ++ + L ++
Sbjct: 103 YGCAADRQQA-TIVFDVAADMVRMSPALSKRVKILASQKRMIYKPTNSFYQVLSAEA--- 158
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
++ F H + + G+ D + +T + I
Sbjct: 159 -YSKHGFNIHGV-VFDELHTQPNRKLFDVMTKGSGDARTQPLYFLITTAGTDTKSICYET 216
Query: 230 PRRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVEGIDPSF-HEGIIA------ 271
++ P DDW ++ + + + E +
Sbjct: 217 HQKAVDILEGRKTDPTFYPVIYGADREDDWTDEKVWHKANPSLGITVPIEKVRQACESAK 276
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + + R Q+ +Q I G D++
Sbjct: 277 QNPTEENAFRQLRLNQWVKQAIRWMPMEKWDLCNFAVNEEELKGRVCYGGLDLSSTTD 334
>gi|183600188|ref|ZP_02961681.1| hypothetical protein PROSTU_03732 [Providencia stuartii ATCC 25827]
gi|188022485|gb|EDU60525.1| hypothetical protein PROSTU_03732 [Providencia stuartii ATCC 25827]
Length = 630
Score = 41.0 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 48 FSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM---ST 104
F P WQ + ++ ++ + + + +I AG G GKT A +L+
Sbjct: 3 FIRPDHWQPQGIDDLEPNAWQA----LRQRESTSIIAGPGAGKTEFLAQKAAYLLETGLC 58
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
P ++ ++ K + L N+
Sbjct: 59 PPNKKILAISFKTDAAKNLADRVKERCPEELSNR 92
>gi|182625300|ref|ZP_02953074.1| putative phage terminase, large subunit [Clostridium perfringens D
str. JGS1721]
gi|177909458|gb|EDT71905.1| putative phage terminase, large subunit [Clostridium perfringens D
str. JGS1721]
Length = 548
Score = 41.0 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 42/348 (12%), Positives = 84/348 (24%), Gaps = 30/348 (8%)
Query: 54 WQLEFMEVVD--AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW-LMSTRPGISV 110
WQ F+E + + V + GR GKT + + L G +
Sbjct: 57 WQKAFVEAIFSIKIYDDEVGRYVRKYQDVLFLVGRKNGKTPFISAICLAEWFCGEMGKKI 116
Query: 111 ICLANSETQLKTTL---------WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
+C +N+ Q L + K +F + C
Sbjct: 117 LCASNNYEQAGLMLDAMDAMREESPRLEKVTRKTVKGIFFGNPKQKKKKGKFTRQNKGCI 176
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN------------L 209
I +K + R D + + + S + +
Sbjct: 177 KKISAKTGAKEGRNIGIGAVDEVFEMKDDSIVMPVRQALSTQDEPLYFELTTEGFTNDGY 236
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI 269
+ R A + I D+ + + SF +
Sbjct: 237 LDERLIEARQALKGEIERPRWLIWLYTQDSEQEVWQDEATWVKSNPGLGVIKKWSFLRKM 296
Query: 270 IARYGLDSDVTRVEVC---GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM--GCDI 324
I S+ R V Q + +++ + I ++ + I D+
Sbjct: 297 IDE-AKTSNSKRAFVLAKDFNIKQNNGAAWLQEDDIVNGNDKHFTLEDLRGSIAIGAVDL 355
Query: 325 AEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAI 372
+E L +++ E ++ A
Sbjct: 356 SETTDLTAAKALVIKDKFKYIIQMYFIPEGKLERCSKEDAEMFKAWAR 403
>gi|116514657|ref|YP_813563.1| superfamily II DNA/RNA helicase [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|116093972|gb|ABJ59125.1| DNA or RNA helicase of superfamily II [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 1046
Score = 41.0 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 28/193 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
LE P ++Q E ++ + A +K + A G+GKT + A+ ++
Sbjct: 316 LETSIRPYNYQQEILDRLQA------EREVYSHYKNLLVAATGVGKTVIAAFDFKRYLAE 369
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
P ++ +A+ + L+ +L Q + L
Sbjct: 370 HPHARLLFVAHRQEILEQSL-------------------QKFREVLNDFNFGHLLVGQYK 410
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
S + Y II DE L+
Sbjct: 411 TDDVSQLFVSIQSFNSEKIADLLPSDYYDFIIIDEFHH---AAAKSYQKLLSHFKPKILL 467
Query: 225 IMTSNPRRLSGKF 237
+T+ P R+ G+
Sbjct: 468 GLTATPDRMDGQD 480
>gi|270296849|ref|ZP_06203048.1| PBSX family phage terminase, large subunit [Bacteroides sp. D20]
gi|270272836|gb|EFA18699.1| PBSX family phage terminase, large subunit [Bacteroides sp. D20]
Length = 422
Score = 41.0 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 42/367 (11%), Positives = 100/367 (27%), Gaps = 53/367 (14%)
Query: 80 GAISAGRGIGKTTLNAWLV--LWLMSTRPGI---SVICLANSETQLKTTLWAEVSKWLSL 134
I+ GRG GK+ + + L T ++ + ++ E+ +
Sbjct: 20 ILITGGRGSGKSFNASTFIERLTFEMTPVEKIVHQILYTRYTMVSAGMSIIPEMME---- 75
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
++ + + S+ +T S +
Sbjct: 76 -------KIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSI--QGITT 126
Query: 195 IINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------ 247
+ DEA + I+ + ++ I+ NP + Y+ + +
Sbjct: 127 FVCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDG 186
Query: 248 --------WKRFQIDTR---TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
I T ++ + P F + + + + V G++ +
Sbjct: 187 VQVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVSNPEKYAHVVIGRWADVAEGAV 246
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
I + + G D + + +L + +
Sbjct: 247 FKKWGIVDEFPAWAK-----KVAFGQDFGYTHDPSASIRCGIVDNALYLDEVDYRTGLLS 301
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA--------VDLEF 408
++ I L RP + + A++ R + G +Y V + D+E
Sbjct: 302 SDIIKTL----RPWGLKVIADSADPRLIQEIHNGGIKIYAVEKGAGSINAGIDKMKDMEI 357
Query: 409 CRNRRTE 415
+R+
Sbjct: 358 YITKRSY 364
>gi|260579078|ref|ZP_05846977.1| prophage LambdaSa04, terminase, large subunit [Corynebacterium
jeikeium ATCC 43734]
gi|258602829|gb|EEW16107.1| prophage LambdaSa04, terminase, large subunit [Corynebacterium
jeikeium ATCC 43734]
Length = 532
Score = 41.0 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 39/297 (13%), Positives = 81/297 (27%), Gaps = 30/297 (10%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG---ISV 110
WQ + + + + + + + GK+ L A + L L++ G V
Sbjct: 49 WQEQIVRDLFGTI---KPDGYRQFTTAYVEIPKKQGKSELAAAIAL-LLTCGDGEQAAEV 104
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q + ++ + + P ++ LS Y + ++ YS
Sbjct: 105 YGCAADRQQA-SIVFEVAADMIRQSPA-LSKRVKILSSQKRIIYKPTNSFYQVLSAEAYS 162
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
S F H A+ + G+ D + +T + I
Sbjct: 163 KHGFNIS---GVVFDELHTQPNRALFDVMTKGSGDARTQPLYFLITTAGTDTHSICYEQH 219
Query: 231 RRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVE------GIDPSFHE-GIIAR 272
++ + P DDW ++ + +D +
Sbjct: 220 QKARDILAGKKHDPTFYPVIYGADLDDDWTDEKVWHKANPSLGVTVPVDKVRAACNSARQ 279
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + R Q+ +Q + A + P G D+A
Sbjct: 280 NPAEENSFRQLRLNQWVKQSVRWMPMHIWDACADPVDLDELEGRPCYGGLDLASTTD 336
>gi|194744070|ref|XP_001954518.1| GF18303 [Drosophila ananassae]
gi|190627555|gb|EDV43079.1| GF18303 [Drosophila ananassae]
Length = 2184
Score = 41.0 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 9/140 (6%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ P V+ +A + +K + ++
Sbjct: 1356 VLLGAPTGSGKTIVAEIAIFRALNQNPKSKVVYIAPLKALVKERISDWEQRFQRSSLGLK 1415
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E+ + + + + + R++ + I+ DE
Sbjct: 1416 VVELTGDVTPDIQAIRESQL--IVTTPEKWDGISRSWQTREYV-------QHVSLIVIDE 1466
Query: 200 ASGTPDVINLGILGFLTERN 219
+ I ++ N
Sbjct: 1467 IHLLGEDRGPVIEVIVSRTN 1486
>gi|194473846|ref|YP_002048670.1| DNA maturase B [Morganella phage MmP1]
gi|194307067|gb|ACF42049.1| DNA maturase B [Morganella phage MmP1]
Length = 586
Score = 41.0 bits (94), Expect = 0.50, Method: Composition-based stats.
Identities = 43/289 (14%), Positives = 77/289 (26%), Gaps = 43/289 (14%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
MS N + L K F F+ F W P P Q++
Sbjct: 1 MSNVRKQNQSNLKTL---------KADFIAFL--FVLWKALNLP-----PPTRCQIDMAR 44
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
V NP+ K + A RGIGK+ + V+WL+ P + V+ ++ S+ +
Sbjct: 45 TVA----------NPKNKKFILQAFRGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERA 94
Query: 121 K-TTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+++ + + LLP Q + + K +
Sbjct: 95 DANSIF--IKNIIELLPFLSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGITGQLT-- 150
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL--GFLTERNANRFWIMTSNPRRLSGK 236
N GT + + + L + I P+
Sbjct: 151 --GSRADIILADDVEIPSNSATQGTREKLWTQVQEFAALLKPLDTSRVIYLGTPQ-TEMT 207
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
Y+ P E + + + + E
Sbjct: 208 LYKELEDNRGYSTIIWPAYY------PRNKEEAMHYGDRLAPMLKAEYD 250
>gi|153818431|ref|ZP_01971098.1| conserved hypothetical protein, putative [Vibrio cholerae NCTC
8457]
gi|126510990|gb|EAZ73584.1| conserved hypothetical protein, putative [Vibrio cholerae NCTC
8457]
Length = 550
Score = 41.0 bits (94), Expect = 0.50, Method: Composition-based stats.
Identities = 34/308 (11%), Positives = 71/308 (23%), Gaps = 19/308 (6%)
Query: 85 GRGIGKTTLNAWLV-LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM 143
R GKTT N + LWL PG ++ S K + A +
Sbjct: 130 PRDHGKTTRNTQAMPLWLALNHPGSFIVICGASADSAKEMMDAIKDDLEDNELILDDYGE 189
Query: 144 QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT 203
Q + S+ + + + E+
Sbjct: 190 QRGNTWTKRKIKLANGSSIVAVGRGQRLRGIK---NKYQRPTHIICDDLLDDKEVESPTL 246
Query: 204 PDVINLGILGFLTERNANRFWIM---TSNPRRLSGKFYEIFNKPL-DDWKRFQIDTRTV- 258
+ I+ +P L + +W + T
Sbjct: 247 RRQAERWFKRVIMNLGKGALTIIANTIMHPDDLPSRLLNQIEDGRLPNWLGLRFSAITPS 306
Query: 259 --EGIDPSF-HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCP--- 312
+ + + + E + P D D+ + E
Sbjct: 307 GRPLFPSRWSLQDLENKRIASGSAWWTEWMNR-PIADEDADFKEDWFIYFKPYELDLRDC 365
Query: 313 DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT---DLRTTNNKISGLVEKYRP 369
+ + + VV R + ++K +I + ++RP
Sbjct: 366 TIGMAVDPATGLKKGDWSFIAVVARHKITMVDHVLFAKGWKESDLQFAQRIVDVYLQHRP 425
Query: 370 DAIIIDAN 377
++ +
Sbjct: 426 SFVMFETV 433
>gi|38229138|ref|NP_938233.1| hypothetical protein D3112p26 [Pseudomonas phage D3112]
gi|37595189|gb|AAQ94464.1| hypothetical protein [Pseudomonas phage D3112]
Length = 551
Score = 41.0 bits (94), Expect = 0.50, Method: Composition-based stats.
Identities = 31/246 (12%), Positives = 62/246 (25%), Gaps = 9/246 (3%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANS 116
+ + +P+ AI+A RG K+TL + V+W + T + + ++
Sbjct: 65 ALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDA 124
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFE--MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
Q T L A ++ F + + +
Sbjct: 125 FEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKRMRGL 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---LTERNANRFWIMTSNPR 231
P N + D + + L + I+
Sbjct: 185 ---RHGPHRPDLVVGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTIL 241
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ PL ++F+ +D + D V +E +
Sbjct: 242 HYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWEKWEELLLNSDDEGVAALEFYQERAAA 301
Query: 292 DIDSFI 297
D I
Sbjct: 302 MEDGAI 307
>gi|60681904|ref|YP_212048.1| hypothetical protein BF2425 [Bacteroides fragilis NCTC 9343]
gi|265763954|ref|ZP_06092522.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|60493338|emb|CAH08123.1| hypothetical protein BF2425 [Bacteroides fragilis NCTC 9343]
gi|263256562|gb|EEZ27908.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 568
Score = 41.0 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 24/191 (12%), Positives = 49/191 (25%), Gaps = 9/191 (4%)
Query: 73 PNPEVFKGAISAGRGIGKTTLN----AWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
+ + GRG+ K+T+ + ++ M PG + + N+ T L+ + V
Sbjct: 30 DWIDTTNLVVVGGRGLAKSTVIQARRSADCVYDM---PGAPLAFVGNTYTNLRDNIMPAV 86
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH 188
L+ S P W + D
Sbjct: 87 KTGWELMGLYEGVHYVSSCRPPESWRRRCSVIVDDYKNTVSFFNGCIIFLGSLDHPSLLA 146
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ + DE+ PD + L ++ ++ D +
Sbjct: 147 GKSVVHLFFDESKYAPDNKVNRAMPVLRGDAIRYGCSHYFLGVTITTDMPDVLEGEYDWY 206
Query: 249 KRFQIDTRTVE 259
F+
Sbjct: 207 --FRYVCLVDP 215
>gi|212715964|ref|ZP_03324092.1| hypothetical protein BIFCAT_00876 [Bifidobacterium catenulatum DSM
16992]
gi|212661331|gb|EEB21906.1| hypothetical protein BIFCAT_00876 [Bifidobacterium catenulatum DSM
16992]
Length = 477
Score = 41.0 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 42/420 (10%), Positives = 96/420 (22%), Gaps = 77/420 (18%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ F+ ++ + + + R IGKT + L + R VI
Sbjct: 39 DLWQKGFLYLLFGKRADGKYACGSGGAVLS--SCRQIGKTFTVGNAIFILCAGRANTLVI 96
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
A+ +A++ L+ + + +
Sbjct: 97 WTAHHTRT-SDETFADMCDMTHN---------PKLARYVENVRRANGQQEIRFTNGSRIM 146
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL-TERNANRFWIMTSNP 230
+ G H+ + DEA ++ + T N ++
Sbjct: 147 FGARENGFG----RGLHSAD--IEVFDEAQILTVKALDNLIPIVNTSPNPLVVFMGNPPK 200
Query: 231 RRLSGKFYEIFNK------------------------PLDDWKRFQIDTRTVEGIDPSFH 266
+ + + W + +
Sbjct: 201 PGDQSEAFGEKRDLALGGDAEGMLYVELAADRDADSDDREAWAKANPSY--PKRTSEQAI 258
Query: 267 EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAE 326
+ DS R E G + + I + + + D+
Sbjct: 259 MRMRNLLAEDS--FRREALGIWDEHVAVRAIDPKLWK--QSETMQVPDGGIPSFALDMP- 313
Query: 327 EGGDNTVVVLRRGPVIEH---------LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
D + +V+ + + D + + + + A++IDA
Sbjct: 314 --PDRSTLVIGNALKLHDGTALIQMAAIEDAHRNGTQWAVEWLRERWPE--TAAVVIDAQ 369
Query: 378 NTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS---LINHSG 434
+ L+ V + + + D L L + +
Sbjct: 370 SPAMSLLSELQKAHVRVTITSMAEMG-----------RAYGRFQDMLNDGQLKHLPDDAQ 418
>gi|146328895|ref|YP_001209648.1| phage terminase, large subunit [Dichelobacter nodosus VCS1703A]
gi|146232365|gb|ABQ13343.1| phage terminase, large subunit [Dichelobacter nodosus VCS1703A]
Length = 424
Score = 41.0 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 32/336 (9%), Positives = 84/336 (25%), Gaps = 38/336 (11%)
Query: 91 TTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHP 150
+ A ++ P +C+ E+ K L
Sbjct: 34 SHFFAERIVEEHIINPNRKTVCI------------REIQKSLRHSVKALVESKIEALGVS 81
Query: 151 APWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG 210
+ + + + D+ +EA
Sbjct: 82 SAFDIQRDLILNRGGNGLMIFQG--MQDHTADSIKSL--EDFDCAWIEEAQSISKRSLSL 137
Query: 211 ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKP-LDDWKRFQIDTRTVEGIDPSFHEGI 269
+ + ++N+ + + NP+ + + ++ ++ R E I
Sbjct: 138 LRPTIRKQNSEIW--ASWNPQLKTDPIDQFLRVDCPENSITVAVNLRDNPFAS----EEI 191
Query: 270 IARYGLDSDVTRVEVC-------GQFPQQDIDSFIPLNIIEEALNR----EPCPDPYAPL 318
Y D + + + G+F ++ + + + +P+ +
Sbjct: 192 WREYRDDRERAKRKAAAGDKNAWGEFEHIWHGAYRSHSAAQVLAGCYRVADFAIEPHWSI 251
Query: 319 IMGCDIAEEGGDNTVV--VLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
G D +V L + ++ + + + T + L +I A
Sbjct: 252 YHGVDWGFASDPTVLVRCYLDEAARVLYIAEEAYGEHVETVDVPQLLSTITNSAQYVIRA 311
Query: 377 NNTGARTCDYLEMLGYHVYRV--LGQKRAVDLEFCR 410
++ + G+ + R Q D
Sbjct: 312 DDARPELISHCRNHGFPLMRAAGKWQGSIEDGVSFL 347
>gi|53713628|ref|YP_099620.1| hypothetical protein BF2339 [Bacteroides fragilis YCH46]
gi|52216493|dbj|BAD49086.1| hypothetical protein [Bacteroides fragilis YCH46]
Length = 568
Score = 41.0 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 24/191 (12%), Positives = 49/191 (25%), Gaps = 9/191 (4%)
Query: 73 PNPEVFKGAISAGRGIGKTTLN----AWLVLWLMSTRPGISVICLANSETQLKTTLWAEV 128
+ + GRG+ K+T+ + ++ M PG + + N+ T L+ + V
Sbjct: 30 DWIDTTNLVVVGGRGLAKSTVIQARRSADCVYDM---PGAPLAFVGNTYTNLRDNIMPAV 86
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH 188
L+ S P W + D
Sbjct: 87 KTGWELMGLYEGVHYVSSCRPPESWRRRCSVIVDDYKNTVSFFNGCIIFLGSLDHPSLLA 146
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ + DE+ PD + L ++ ++ D +
Sbjct: 147 GKSVVHLFFDESKYAPDNKVNRAMPVLRGDAIRYGCSHYFLGVTITTDMPDVLEGEYDWY 206
Query: 249 KRFQIDTRTVE 259
F+
Sbjct: 207 --FRYVCLVDP 215
>gi|160915221|ref|ZP_02077434.1| hypothetical protein EUBDOL_01229 [Eubacterium dolichum DSM 3991]
gi|158433020|gb|EDP11309.1| hypothetical protein EUBDOL_01229 [Eubacterium dolichum DSM 3991]
Length = 444
Score = 41.0 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 32/250 (12%), Positives = 74/250 (29%), Gaps = 17/250 (6%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ + + N + + +++GR K++ A + +L+ + + + +
Sbjct: 10 LSDIIIPKFQPLVNDREHMHQI-LTSGRAGTKSSAMAIMADFLIVSEDDSAAVIMRKHHN 68
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+L+ T++ E + + L + S + + Y T + +
Sbjct: 69 KLRKTVYQECVRAIGRLGLSKKHFTITRSPMQITYK--------KNGNTIYFTGSDSIDD 120
Query: 179 ERPDTFVGHHNTYGMAIINDEA--SGTPDVINLGILGFLTERNAN--RFWIMTSNPRRLS 234
+ +H + E G + L I+ N R + + P+
Sbjct: 121 TKGMIDEKNHIRLVVLDELTEFFDKGEGEDEILNIVATFVRGNDEDFRMMYLYNPPKNPK 180
Query: 235 GKFYEIFNKPLDDWKRFQI--DTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
E K I D R V + + A D + R G+
Sbjct: 181 APVNEWCRKMEQRADCIHIHTDYRDVPMKWLGRKLIDEAEAMKLADFKMYRWIWLGEAVG 240
Query: 291 QDIDSFIPLN 300
D + +
Sbjct: 241 LDDLIYYMFD 250
>gi|300811800|ref|ZP_07092271.1| helicase C-terminal domain protein [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300497216|gb|EFK32267.1| helicase C-terminal domain protein [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 1046
Score = 40.7 bits (93), Expect = 0.53, Method: Composition-based stats.
Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 28/193 (14%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
LE P ++Q E ++ + A +K + A G+GKT + A+ ++
Sbjct: 316 LETSIRPYNYQQEILDRLQA------EREVYGHYKNLLVAATGVGKTVIAAFDFKRYLAE 369
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
P ++ +A+ + L+ +L Q + L
Sbjct: 370 HPHARLLFVAHRQEILEQSL-------------------QKFREVLNDFNFGHLLVGQYK 410
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW 224
S + Y II DE L+
Sbjct: 411 TDDVSQLFVSIQSFNSEKMADLLPSDYYDFIIIDEFHH---AAAKSYQKLLSHFKPKILL 467
Query: 225 IMTSNPRRLSGKF 237
+T+ P R+ G+
Sbjct: 468 GLTATPDRMDGQD 480
>gi|26989017|ref|NP_744442.1| DNA maturase B [Pseudomonas putida KT2440]
gi|24983840|gb|AAN67906.1|AE016423_1 DNA maturase B [Pseudomonas putida KT2440]
Length = 562
Score = 40.7 bits (93), Expect = 0.54, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 2/110 (1%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ + I A RG+GK+ + A V WL+ P + ++ ++ S +
Sbjct: 34 QYDIARYLQHGPRRCVIEAFRGVGKSWVTAAFVCWLLWRNPQLRILVVSASSARA-DAFS 92
Query: 126 AEVSKWLSLLP-NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ V + + +P +H + K M +
Sbjct: 93 SFVKRLIHEMPLLQHLKPGPDQIDKMVAFEVAPALPDQSPSVKSVGIMGQ 142
>gi|260948128|ref|XP_002618361.1| hypothetical protein CLUG_01820 [Clavispora lusitaniae ATCC 42720]
gi|238848233|gb|EEQ37697.1| hypothetical protein CLUG_01820 [Clavispora lusitaniae ATCC 42720]
Length = 1910
Score = 40.7 bits (93), Expect = 0.54, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 14/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W PG V+ +A + ++ V W + L
Sbjct: 1130 VFVGSPTGSGKT-VVAELAIWHAFKEFPGSKVVYIAPMKALVRER----VDDWRTRL--- 1181
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIIN 197
+ D L + + + + +I
Sbjct: 1182 ----CKPTGRKLVELTGDSLPEARDVRESDIIITTPEKFDGISRNWQTRKFVQEISLVIM 1237
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + ++ N
Sbjct: 1238 DEIHLLASDRGPILEMIVSRMN 1259
>gi|296133028|ref|YP_003640275.1| flagellar biosynthetic protein FlhF [Thermincola sp. JR]
gi|296031606|gb|ADG82374.1| flagellar biosynthetic protein FlhF [Thermincola potens JR]
Length = 389
Score = 40.7 bits (93), Expect = 0.55, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 7/121 (5%)
Query: 4 ELPTNPETEQKLFDLMWSDEIKLS----FSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFM 59
+ T PE Q+ ++ +E++ + +L +P E + + L+ +
Sbjct: 122 DAKTLPEPLQRFHQILIDNEVEEALAAKILKGLLKTYPAEEPVEGHKLKKSLEQSMLKIL 181
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119
A+ G+GKTT A L + A++
Sbjct: 182 RRPKPITFKKQGLHQQV---VALIGPTGVGKTTTIAKLAATFSIVDKKKVALITADTYRV 238
Query: 120 L 120
Sbjct: 239 A 239
>gi|229120179|ref|ZP_04249430.1| phage terminase, large subunit [Bacillus cereus 95/8201]
gi|228663220|gb|EEL18809.1| phage terminase, large subunit [Bacillus cereus 95/8201]
Length = 540
Score = 40.7 bits (93), Expect = 0.55, Method: Composition-based stats.
Identities = 47/364 (12%), Positives = 86/364 (23%), Gaps = 38/364 (10%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
EK P FS +WQ + + GRG GK ++
Sbjct: 43 EKPAPYFPFSL-FAWQRFCNAFFYGVRYEDGRL---MFDRYLLLLGRGAGKNGYISYDCF 98
Query: 100 WLMSTRPGIS---VICLANSETQLKTTLWA-----EVSKWLSLL-----PNKHWFEMQSL 146
+++S GI + +A SE Q KT+ E K+ L +K +
Sbjct: 99 YMLSGHHGIKNYDIDIVATSEDQAKTSFEDVLNILETPKFARKLKKVFYKSKILIKHIKT 158
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEA-- 200
S+ Y + + +G + I +
Sbjct: 159 KSKFEFNTSNARTKDGKRSGTVIFDELHEYEDYSNIKVFTSGLGKKKDPRIFYITTDGNV 218
Query: 201 -SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
G D + L + + E W++ R E
Sbjct: 219 RGGVLDDMKEEAQLVLNKELPHSTLFPFICK-----LDDEKEVHDESMWEKANPSYRYNE 273
Query: 260 GIDPSFHEGIIARYGLDSDV---TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ +S + + + P
Sbjct: 274 NL-QHEMRKEYHDMQRNSALRIEFMTKRMNLPVEDTRKEVATYEERLATEQPFPENVQGI 332
Query: 317 PLIMGCDIAEEGGDNTV--VVLRRGPVI---EHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
I D A+ +V + G + L+ N I + +
Sbjct: 333 ECIGAVDFAQIRDFCSVGIYFKKDGKRYWLQHTFMHHTAPKLQDINPDIIRIAIEKGLLT 392
Query: 372 IIID 375
++ D
Sbjct: 393 VVYD 396
>gi|195344412|ref|XP_002038781.1| GM10427 [Drosophila sechellia]
gi|194133802|gb|EDW55318.1| GM10427 [Drosophila sechellia]
Length = 1593
Score = 40.7 bits (93), Expect = 0.55, Method: Composition-based stats.
Identities = 37/352 (10%), Positives = 83/352 (23%), Gaps = 46/352 (13%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ G+GKT + A ++ P ++ +A + + + A
Sbjct: 74 TLVVLPTGLGKTFIAAVVMYNFYRWYPKGKIVFMAPTRPLVSQQIHASQKIM-------- 125
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT--YSEERPDTFVGHHNTYGMAIIN 197
++ L + + + D I+
Sbjct: 126 -PFPSEDTVQLTGQLPRPKRAELWASKRVFFATPQVVHSDMLEADGGSSFPFGSIKLIVV 184
Query: 198 DEASGTPDVINLG-ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
DEA + L RN + + S + + + I
Sbjct: 185 DEAHRAKGRYAYTQVADCLMARNRHFRMLALSATPGRTMEDVAAVCRN------LYISNL 238
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
V + I R + + V ++ + P++ + I + + E
Sbjct: 239 QVRWDTSIDVQPYIHRRTIRTIVVSLKERIKEPRERLLQIIEPYLRQL---TEAEIFKGN 295
Query: 317 PLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ + + V +G D + + + Y
Sbjct: 296 KGTVSRNSLLFEQKSFVERSAQGQR--------HPDHNIIMSNFAMCISMYHS------- 340
Query: 377 NNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
D +E G V+ E R + + +E
Sbjct: 341 -------LDLMERHGLRVFVNNFDADEDGREKFVLARD---GNLRNLVEQVR 382
>gi|82776057|ref|YP_402404.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
gi|309786464|ref|ZP_07681088.1| terL-like domain protein [Shigella dysenteriae 1617]
gi|81240205|gb|ABB60915.1| putative bacteriophage protein [Shigella dysenteriae Sd197]
gi|308925652|gb|EFP71135.1| terL-like domain protein [Shigella dysenteriae 1617]
Length = 133
Score = 40.7 bits (93), Expect = 0.55, Method: Composition-based stats.
Identities = 11/102 (10%), Positives = 22/102 (21%), Gaps = 23/102 (22%)
Query: 340 PVIEHLFDWSKTDLRTTNNKISGL-VEKYRPDAIIIDANNTGARTCDYLEMLG------- 391
V+ +W + + R I+ D+ GA +
Sbjct: 11 SVVFWADEWKAKEDELLKSCQRTYQAALEREADIVYDSIGVGASAGAKFSEINADRKSEN 70
Query: 392 ---YHVYRVLGQKRA------------VDLEFCRNRRTELHV 418
V A + +F N + +
Sbjct: 71 AYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWW 112
>gi|42779478|ref|NP_976725.1| phage terminase, large subunit, putative [Bacillus cereus ATCC
10987]
gi|42735394|gb|AAS39333.1| phage terminase, large subunit, putative [Bacillus cereus ATCC
10987]
Length = 534
Score = 40.7 bits (93), Expect = 0.55, Method: Composition-based stats.
Identities = 40/353 (11%), Positives = 92/353 (26%), Gaps = 40/353 (11%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFF----PWGEKGTPLEGFSAPRSWQLE 57
R+L T + ++ F+ W K L WQ +
Sbjct: 1 MRKLKKYKPTAFIADGSYYDEDAADYAVAFIEALSHTKGLWAGKPFELI------DWQEQ 54
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLAN 115
+ + + + + + +GK+ L A + L L V A
Sbjct: 55 IIRDLFGIL---KPDGYRQFNTAYVEIPKKMGKSELAAAIALLLTCGDGEERAEVYGCAA 111
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHW-FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
Q + ++ + + + P + ++ + + ++ + L ++
Sbjct: 112 DRQQA-SIVFEVAADMVRMCPALNKRVKLLASTKRLVYLPTNSFYQVLSAEA----YSKH 166
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
++ F H + + G+ D + +T + I ++
Sbjct: 167 GFNIHGV-VFDELHTQPNRKLFDVMTKGSGDARTQPLYFLITTAGTDTQSICYETHQKAV 225
Query: 235 GKFYEIFNKP-----------LDDWKRFQIDTRTVE------GIDPSFHE-GIIARYGLD 276
P DDW ++ + GID + +
Sbjct: 226 DIIEGRKYDPTFYPVIYGAKEEDDWTDPKVWKKANPSLGITVGIDKVRAACESAKQNPAE 285
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ R Q+ +Q + A P G D++
Sbjct: 286 ENSFRQLRLNQWVKQSVRWMPMAKWDACAFPVIPESLEGRVCYGGLDLSSTTD 338
>gi|251777966|ref|ZP_04820886.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082281|gb|EES48171.1| phage terminase, large subunit, pbsx family [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 417
Score = 40.7 bits (93), Expect = 0.56, Method: Composition-based stats.
Identities = 31/275 (11%), Positives = 62/275 (22%), Gaps = 19/275 (6%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
AH FK GRG K++ + ++ + ++ A ++K
Sbjct: 15 YAAHKDIKQGLHTHHWFK----GGRGSTKSSFISIEIVLGIMKDAQEGIMSNALILRRVK 70
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP 181
TL V + + W ++ S + +
Sbjct: 71 DTLSESVRDQIKWAIDILG--------VSDDWIIPEAKLTITYKSTGQVIRFKGADNPKK 122
Query: 182 DTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSNPRRLSGKFYE 239
Y I +E D I + + + P
Sbjct: 123 VKSTKVPKGYIKYIWYEEVDEFEGYDKIRNINQSLMRGGPKFFVFYSFNPPESQRNWANL 182
Query: 240 IFNKPLDDWKRFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
+D TV + F ++ + G+ + F
Sbjct: 183 EVLDKREDKLIHHSTYLTVPRDWLGEPFITEAEDLKEKNTTKYEHDYLGKVTGTGAEIF- 241
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
+ + + + L G D T
Sbjct: 242 --DNVVIRKISDEEVRSFDRLYRGVDFGWFPDPWT 274
>gi|196249572|ref|ZP_03148269.1| type III restriction protein res subunit [Geobacillus sp. G11MC16]
gi|196210866|gb|EDY05628.1| type III restriction protein res subunit [Geobacillus sp. G11MC16]
Length = 815
Score = 40.7 bits (93), Expect = 0.56, Method: Composition-based stats.
Identities = 43/319 (13%), Positives = 87/319 (27%), Gaps = 47/319 (14%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
PR Q+E +E ++A + + G+GKT L A+ R V
Sbjct: 224 PRFAQVEALERLEAAYEEGYDKAM-------VVMATGLGKTYLAAFFA------RRFSRV 270
Query: 111 ICLANSE---TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ +A+ E Q K + + + + + H + + + + + +
Sbjct: 271 LFIAHREEILRQAKQSFECVIPDRTAGIYDGHQKDGNADMVFASIFTLSMKKHLF----- 325
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
I+ DE L +T
Sbjct: 326 ------------------SFRPDSFDLIVVDEFHH---AAARSYKRVLRYFRPEFLLGIT 364
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ P R K ++ I+ + P + G+ D+D ++++ G
Sbjct: 365 ATPDRNDNKDVYAICDGNVAYRIDFIEAVQRGWLAPFHYYGVY----DDTDYSQIKWLGS 420
Query: 288 FPQQDI-DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF 346
++ + E + R ++ C + RRG L
Sbjct: 421 RYDEEELLQVQLREEMAENILRAWEQYKKTRTLVFCSSIRQADFLCEYFRRRGYRTVSLH 480
Query: 347 DWSKTDLRTTNNKISGLVE 365
T R + E
Sbjct: 481 SKQTTIPRQQAIAMLEQCE 499
>gi|312062887|gb|ADQ12749.1| putative DNA maturase B [Acinetobacter phage phiAB1]
Length = 645
Score = 40.7 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 74/238 (31%), Gaps = 27/238 (11%)
Query: 9 PETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLN 68
P+ ++++F LM F+ L F + E G GF E E + + +
Sbjct: 28 PKEDREMFALM--------FAGLFLSFRDFAELGMAYLGFK-----MSEIQEDIADYMQH 74
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT---TLW 125
+ A RG K+TL A +W + RP + ++ Q + +
Sbjct: 75 GYKYRM-------VQAQRGQAKSTLAALYCIWRLIQRPKDRCLIVSAGGDQADSIALIIT 127
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+++W L W + + +HC L K S S +
Sbjct: 128 RIINQWDILC----WMRPDTTRGDRDSAKNYDIHCDLKGIDKSASVSSVGISAQLAGKRA 183
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
+ ++ + + T + + + P+ + E+ +
Sbjct: 184 DFLLADDIEVMRNSMTQTEREKLALQTREFSAICIHGDIMYLGTPQTKDSIYRELPRR 241
>gi|259146773|emb|CAY80030.1| Slh1p [Saccharomyces cerevisiae EC1118]
Length = 1967
Score = 40.7 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 12/139 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ + G GKT + A L +W T PG ++ +A + ++ V W
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKK-----I 1209
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + S + D+ T + + II DE
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDVH-DATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268
Query: 201 SGTPDVINLGILGFLTERN 219
+ ++ N
Sbjct: 1269 HLLASDRGPILEMIVSRMN 1287
>gi|256272657|gb|EEU07634.1| Slh1p [Saccharomyces cerevisiae JAY291]
Length = 1967
Score = 40.7 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 12/139 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ + G GKT + A L +W T PG ++ +A + ++ V W
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKK-----I 1209
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + S + D+ T + + II DE
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDVH-DATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268
Query: 201 SGTPDVINLGILGFLTERN 219
+ ++ N
Sbjct: 1269 HLLASDRGPILEMIVSRMN 1287
>gi|254884635|ref|ZP_05257345.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|254837428|gb|EET17737.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
Length = 422
Score = 40.7 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 42/367 (11%), Positives = 100/367 (27%), Gaps = 53/367 (14%)
Query: 80 GAISAGRGIGKTTLNAWLV--LWLMSTRPGI---SVICLANSETQLKTTLWAEVSKWLSL 134
I+ GRG GK+ + + L T ++ + ++ E+ +
Sbjct: 20 ILITGGRGSGKSFNASTFIERLTFEMTPVEKIVHQILYTRYTMVSAGMSIIPEMME---- 75
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
++ + + S+ +T S +
Sbjct: 76 -------KIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSI--QGITT 126
Query: 195 IINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------ 247
+ DEA + I+ + ++ I+ NP + Y+ + +
Sbjct: 127 FVCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDG 186
Query: 248 --------WKRFQIDTR---TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
I T ++ + P F + + + + V G++ +
Sbjct: 187 VQVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVSNPEKYAHVVIGRWADVAEGAV 246
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
I + + G D + + +L + +
Sbjct: 247 FKKWGIVDEFPAWAK-----KIAFGQDFGYTHDPSASIRCGIVDNALYLDEVDYRTGLLS 301
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA--------VDLEF 408
++ I L RP + + A++ R + G +Y V + D+E
Sbjct: 302 SDIIKTL----RPWGLKVIADSADPRLIQEIHNGGIKIYAVEKGAGSINAGIDKMKDMEI 357
Query: 409 CRNRRTE 415
+R+
Sbjct: 358 YITKRSY 364
>gi|207344888|gb|EDZ71878.1| YGR271Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 960
Score = 40.7 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 12/139 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ + G GKT + A L +W T PG ++ +A + ++ V W
Sbjct: 153 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKK-----I 202
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + S + D+ T + + II DE
Sbjct: 203 TPVTGDKVVELTGDSLPDPKDVH-DATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 261
Query: 201 SGTPDVINLGILGFLTERN 219
+ ++ N
Sbjct: 262 HLLASDRGPILEMIVSRMN 280
>gi|330443576|ref|NP_011787.2| Slh1p [Saccharomyces cerevisiae S288c]
gi|190406727|gb|EDV09994.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|329138905|tpg|DAA08359.2| TPA: Slh1p [Saccharomyces cerevisiae S288c]
Length = 1967
Score = 40.7 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 12/139 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ + G GKT + A L +W T PG ++ +A + ++ V W
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKK-----I 1209
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + S + D+ T + + II DE
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDVH-DATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268
Query: 201 SGTPDVINLGILGFLTERN 219
+ ++ N
Sbjct: 1269 HLLASDRGPILEMIVSRMN 1287
>gi|151943543|gb|EDN61854.1| conserved protein [Saccharomyces cerevisiae YJM789]
Length = 1967
Score = 40.7 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 12/139 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ + G GKT + A L +W T PG ++ +A + ++ V W
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKK-----I 1209
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + S + D+ T + + II DE
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDVH-DATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268
Query: 201 SGTPDVINLGILGFLTERN 219
+ ++ N
Sbjct: 1269 HLLASDRGPILEMIVSRMN 1287
>gi|1143249|gb|AAC49699.1| G9365 ORF [Saccharomyces cerevisiae]
Length = 1967
Score = 40.7 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 12/139 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ + G GKT + A L +W T PG ++ +A + ++ V W
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKK-----I 1209
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + S + D+ T + + II DE
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDVH-DATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268
Query: 201 SGTPDVINLGILGFLTERN 219
+ ++ N
Sbjct: 1269 HLLASDRGPILEMIVSRMN 1287
>gi|1723776|sp|P53327|SLH1_YEAST RecName: Full=Antiviral helicase SLH1; AltName: Full=SKI2-like
helicase 1
gi|1323493|emb|CAA97301.1| unnamed protein product [Saccharomyces cerevisiae]
Length = 1967
Score = 40.7 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 12/139 (8%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ + G GKT + A L +W T PG ++ +A + ++ V W
Sbjct: 1160 VGSPTGSGKT-IVAELAIWHAFKTFPGKKIVYIAPMKALVRER----VDDWRKK-----I 1209
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ + S + D+ T + + II DE
Sbjct: 1210 TPVTGDKVVELTGDSLPDPKDVH-DATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEI 1268
Query: 201 SGTPDVINLGILGFLTERN 219
+ ++ N
Sbjct: 1269 HLLASDRGPILEMIVSRMN 1287
>gi|333029139|ref|ZP_08457202.1| putative helicase-like protein [Streptomyces sp. Tu6071]
gi|332742347|gb|EGJ72789.1| putative helicase-like protein [Streptomyces sp. Tu6071]
Length = 928
Score = 40.7 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 42/167 (25%), Gaps = 20/167 (11%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVF--KGAISAGRGIGKTTLNAWLVLWLMSTRPGIS 109
R Q+E M + + + + + G GKT A L L P
Sbjct: 19 RKHQVELMSDLRKWVRVAARESARSGRGARATVVSATGTGKTISAAVAALEL---FPSGR 75
Query: 110 VICLANSETQLKTT------------LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDV 157
V+ + + L T + S LL + + + A W
Sbjct: 76 VLVMVPTLDLLVQTAQSWRAVGHTAPMVGVCSLPGDLLLEELRVRTTTHPIRLALWAGQG 135
Query: 158 LHCSLGIDSKHYSTMCRTYSEERPDTFVGH---HNTYGMAIINDEAS 201
L S + E G + DEA
Sbjct: 136 PVVVLATYSSLVGGDGQGGPLEAALAGSGLYGQRMDGFDLAVVDEAH 182
>gi|153955261|ref|YP_001396026.1| Phage terminase [Clostridium kluyveri DSM 555]
gi|219855686|ref|YP_002472808.1| hypothetical protein CKR_2343 [Clostridium kluyveri NBRC 12016]
gi|146348119|gb|EDK34655.1| Phage terminase [Clostridium kluyveri DSM 555]
gi|219569410|dbj|BAH07394.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 544
Score = 40.7 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 51/481 (10%), Positives = 118/481 (24%), Gaps = 77/481 (16%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + I + +GK+ L A + L L V
Sbjct: 60 DWQEQIVRDLFGILKPNGYR---QFNTAYIEIPKKMGKSELAAAIALLLTCGDGEERAEV 116
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHW-FEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q + ++ + + + P + ++ + + ++ + L ++
Sbjct: 117 YGCAADRQQA-SIVFEVAADMVRMCPALNKRVKLLASTKRLVYLPTNSFYQVLSAEA--- 172
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
++ F H + + G+ D + +T + I
Sbjct: 173 -YSKHGFNIHGV-VFDELHTQPNRKLFDVMTKGSGDARTQPLYFLITTAGTDTQSICYET 230
Query: 230 PRRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVE------GIDPSFHE-GIIA 271
++ P DDW ++ + ID
Sbjct: 231 HQKAVDIIEGRKYDPTFYPVIYGAKEEDDWTDPKVWKKANPSLGITVSIDKVRAACESAK 290
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
+ + + R Q+ +Q + A +P G D++
Sbjct: 291 QNPAEENSFRQLRLNQWVKQSVRWMPMAKWDACAFPVKPESLEGRVCYGGLDLSSTTDIT 350
Query: 332 TVV----------------------------VLRRGPVIEHLFDWSKTDLRT-------- 355
V V R +
Sbjct: 351 AFVLVFPPEDETDKYTVLPYFWMPEDNIDLRVRRDHVQYDLWEKQGYILTTEGNVVHYGY 410
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTE 415
I L EKY I D + LE LG+ V + + +
Sbjct: 411 IEKFIEELGEKYNIREIAFDRWGA-VQMVQNLEGLGFTVVPFGQGFKDMSPPT----KEL 465
Query: 416 LHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYT 475
+ + + + + +++ + G + + K + D + +
Sbjct: 466 MKLTLEERIAHGGHP----VLRWMMDNIYIKTDPAGNIK--PDKEKSTEKIDGAVATIMA 519
Query: 476 F 476
Sbjct: 520 L 520
>gi|295703833|ref|YP_003596908.1| nickel import ABC transporter nickel-binding protein NikA [Bacillus
megaterium DSM 319]
gi|294801492|gb|ADF38558.1| nickel import ABC transporter, nickel-binding protein NikA
[Bacillus megaterium DSM 319]
Length = 541
Score = 40.7 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 7/119 (5%), Positives = 25/119 (21%), Gaps = 3/119 (2%)
Query: 340 PVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR-TCDYLEMLGYHVYRVL 398
+ + + L ++ + ++ + + +
Sbjct: 377 GKLLEIELMYDSAESIQKAMAETLQSEWAAIGVKLNIVGVELADQVQRFKDNKFDINFFS 436
Query: 399 GQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPNTGELAIES 457
D N + + + N LI+ + + + S
Sbjct: 437 NYGAPYDPHTFLNIVASKGYGFNEAIS--AYPNKDELIKQMVKVPQTTDEKERQQLYAS 493
>gi|150864206|ref|XP_001382938.2| DNA-directed DNA polymerase [Scheffersomyces stipitis CBS 6054]
gi|149385462|gb|ABN64909.2| DNA-directed DNA polymerase [Scheffersomyces stipitis CBS 6054]
Length = 1942
Score = 40.7 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 36/142 (25%), Gaps = 14/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W PG V+ +A L E K
Sbjct: 1145 VFVGSPTGSGKT-VVAELAIWHAFKQFPGSKVVYIAP-----MKALVRERVDDWRARICK 1198
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIIN 197
+ S D L + + + + +I
Sbjct: 1199 N------TSYKLVELTGDSLPEAKEVREADIIITTPEKFDGISRNWQTRKFVQQVSLVIM 1252
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + ++ N
Sbjct: 1253 DEIHLLASDRGPILEMIVSRMN 1274
>gi|149238153|ref|XP_001524953.1| hypothetical protein LELG_03985 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451550|gb|EDK45806.1| hypothetical protein LELG_03985 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1936
Score = 40.7 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 36/140 (25%), Gaps = 14/140 (10%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ + G GKT + A L +W P V+ +A L E +KH
Sbjct: 1141 VGSPTGSGKT-IVAELAIWHAFKEFPKSKVVYIAP-----MKALVRERVDDWRKRISKH- 1193
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIINDE 199
S D L + + + + +I DE
Sbjct: 1194 -----TSHKLVELTGDSLPSTHEVKEADIIVTTPEKFDGISRNWQTRKFVQQVSLVIMDE 1248
Query: 200 ASGTPDVINLGILGFLTERN 219
+ ++ N
Sbjct: 1249 IHLLASDRGPILEMIVSRMN 1268
>gi|325272814|ref|ZP_08139151.1| DNA maturase B [Pseudomonas sp. TJI-51]
gi|324102019|gb|EGB99528.1| DNA maturase B [Pseudomonas sp. TJI-51]
Length = 562
Score = 40.7 bits (93), Expect = 0.59, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 2/110 (1%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLW 125
+ + I A RG+GK+ + A V WL+ P + ++ ++ S +
Sbjct: 34 QYDIARYLQHGPRRCVIEAFRGVGKSWVTAAFVCWLLWRNPQLRILVVSASSARA-DAFS 92
Query: 126 AEVSKWLSLLP-NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
V + + +P +H + K M +
Sbjct: 93 TFVKRLIHEMPLLQHLKPGPDQIDKMVAFEVAPALPDQSPSVKSVGIMGQ 142
>gi|156847546|ref|XP_001646657.1| hypothetical protein Kpol_1028p75 [Vanderwaltozyma polyspora DSM
70294]
gi|156117336|gb|EDO18799.1| hypothetical protein Kpol_1028p75 [Vanderwaltozyma polyspora DSM
70294]
Length = 1982
Score = 40.7 bits (93), Expect = 0.59, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 14/157 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W PG ++ +A + ++ V W K
Sbjct: 1162 VFVGSPTGSGKT-VVAELAIWHAFRDFPGKKIVYIAPMKALVRER----VDDWR-----K 1211
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ + S + D+ T + + +I D
Sbjct: 1212 RITPVTGDRVVELTGDSLPDPKDVR-DATIVITTPEKFDGISRNWQTRKFVQNISLVIMD 1270
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
E + ++ N TSNP RL G
Sbjct: 1271 EIHLLASDRGPILEMIVSRMN--YIASQTSNPIRLLG 1305
>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
Length = 1721
Score = 40.7 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 10/129 (7%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G GKT ++L L S P ++ A + + L +S + P + E++ +
Sbjct: 1332 GTGKTETILSIILSLQSHFPDSRILLTAPTHNAVDNVLRRYLSLNPTHPPLRISTEIRKV 1391
Query: 147 SLHPAPWYSDVL----------HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
S P+ D + K +S + N +I
Sbjct: 1392 SPDVTPYTLDAMAGIELNTLHSRAETTKAKKRVKAAKIVFSTCIGSSLGLLRNEMFDIVI 1451
Query: 197 NDEASGTPD 205
DEAS +
Sbjct: 1452 IDEASQQTE 1460
>gi|325842543|ref|ZP_08167714.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
gi|325489587|gb|EGC91951.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
Length = 624
Score = 40.7 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 60/203 (29%), Gaps = 11/203 (5%)
Query: 60 EVVDAHCLNS----VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ H L + F+ + G GKT +W +L G V+ +A+
Sbjct: 16 RELYEHQLEAISCLDEMDEQSSFRTLVVIPTGGGKTLTASWWLLKKAL-NEGKKVLWIAH 74
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ L+ L + W + + V D S
Sbjct: 75 RQMLLEQALMTFKQNAYATCMPTRW---SFDYRIVSGIHDKVSQIKKEDDLLIISKDSLV 131
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI-MTSNPRRLS 234
+ + + ++ DEA P IL ++ + + +T+ P R
Sbjct: 132 SRLNGLKPW--LKDQKEVYVVIDEAHHAPAKSYQTILNYIDSQVEQVKLLGLTATPFRTE 189
Query: 235 GKFYEIFNKPLDDWKRFQIDTRT 257
K I + D ++ID
Sbjct: 190 EKESGILAQIFRDDICYKIDLTD 212
>gi|293375270|ref|ZP_06621552.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
gi|292646026|gb|EFF64054.1| DEAD/DEAH box helicase [Turicibacter sanguinis PC909]
Length = 624
Score = 40.7 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 60/203 (29%), Gaps = 11/203 (5%)
Query: 60 EVVDAHCLNS----VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ H L + F+ + G GKT +W +L G V+ +A+
Sbjct: 16 RELYEHQLEAISCLDEMDEQSSFRTLVVIPTGGGKTLTASWWLLKKAL-NEGKKVLWIAH 74
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ L+ L + W + + V D S
Sbjct: 75 RQMLLEQALMTFKQNAYATCMPTRW---SFDYRIVSGIHDKVSQIKKEDDLLIISKDSLV 131
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI-MTSNPRRLS 234
+ + + ++ DEA P IL ++ + + +T+ P R
Sbjct: 132 SRLNGLKPW--LKDQKEVYVVIDEAHHAPAKSYQTILNYIDSQVEQVKLLGLTATPFRTE 189
Query: 235 GKFYEIFNKPLDDWKRFQIDTRT 257
K I + D ++ID
Sbjct: 190 EKESGILAQIFRDDICYKIDLTD 212
>gi|320580086|gb|EFW94309.1| translation-regulating helicase, putative [Pichia angusta DL-1]
Length = 1918
Score = 40.7 bits (93), Expect = 0.61, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 16/143 (11%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTL--WAEVSKWLSLLP 136
+ + G GKT + A L +W PG V+ +A + ++ + W E +
Sbjct: 1137 VFVGSPTGSGKT-VVAELAIWHAFNEFPGSKVVYIAPMKALVRERVDDWRE-----RISR 1190
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
N ++ + + + + R + + +I
Sbjct: 1191 NTKHKVVEMTGDSLPEAREVREADIIITTPEKFDGISRNWQTRKFV-------QDVSLVI 1243
Query: 197 NDEASGTPDVINLGILGFLTERN 219
DE + ++ N
Sbjct: 1244 MDEIHLLASDRGPILEIIVSRMN 1266
>gi|150391725|ref|YP_001321774.1| phage terminase [Alkaliphilus metalliredigens QYMF]
gi|149951587|gb|ABR50115.1| phage Terminase [Alkaliphilus metalliredigens QYMF]
Length = 521
Score = 40.7 bits (93), Expect = 0.62, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 76/298 (25%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + + + +GK+ L A + L L V
Sbjct: 38 DWQEQIIRDLFGTIKPNGYR---QFNTAYVEIPKKMGKSELAAAVALLLTCGDNEERAEV 94
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q + ++ + + + P ++ + ++ L D
Sbjct: 95 YGCAADRNQA-SIVFNVAADMVRMCPALSKRVKILDSQKRLIYQPTGSIYQVLSADVG-- 151
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA--------- 220
++ F H + + G+ D + +T
Sbjct: 152 --NKHGFNTHGV-VFDELHTQPNRKLYDVMTKGSGDARMQPLYFLITTAGDNQNSICWEV 208
Query: 221 NRFWIMTSNPRRLSGKFY--EIFNKPLDDWKRFQIDTRTVEGI-------DPSFHEGIIA 271
++ + R+ FY DDW ++ + +
Sbjct: 209 HQKALDIMAGRKNDPTFYPVIYGAALEDDWSDPKVWKKANPSLGITVSMDKVKMAYESAR 268
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + + R Q+ +Q I A P G D++
Sbjct: 269 QNPAEENSFRQLRLNQWVKQAIRWMPMDKWDACAFPVNPESLKGRVCYGGLDLSSSTD 326
>gi|238502669|ref|XP_002382568.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
gi|220691378|gb|EED47726.1| DEAD/DEAH box helicase, putative [Aspergillus flavus NRRL3357]
Length = 1997
Score = 40.7 bits (93), Expect = 0.63, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 43/146 (29%), Gaps = 12/146 (8%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W PG V+ +A + ++ + +
Sbjct: 1154 HTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGSKVVYIAPMKALVRERVHDWKKRLTG 1212
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+ K E+ + D + + + + R++
Sbjct: 1213 PMGLK-LVELTGDNTPDTRTIRDADI--IITTPEKWDGISRSWQTRDYVR-------KVS 1262
Query: 194 AIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1263 LVIIDEIHLLGGDRGPILEIIVSRMN 1288
>gi|299138968|ref|ZP_07032145.1| Terminase [Acidobacterium sp. MP5ACTX8]
gi|298599122|gb|EFI55283.1| Terminase [Acidobacterium sp. MP5ACTX8]
Length = 563
Score = 40.7 bits (93), Expect = 0.64, Method: Composition-based stats.
Identities = 30/212 (14%), Positives = 57/212 (26%), Gaps = 31/212 (14%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
EKG +Q+ + + + + + R GK+ L A + L
Sbjct: 71 EKGAKQSTPFLLEDFQVFIVCSIFGFVDR--DTQLRRFREAVLLIPRKNGKSPLAAAIAL 128
Query: 100 WLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLPN---KHWFEMQSLSLHPAPWY 154
++ G C A +E Q + L +P ++ E+ + SL
Sbjct: 129 YMTFFDGEKGAETYCGALTEQQAFEV-FRPAKAMLEGMPALCKRYGIEINAKSLVQPTSR 187
Query: 155 SDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214
S ++ + DEA D
Sbjct: 188 SRMMPVIGTGRDGSM----------------------PHLFVGDEAHQWRDASLYDAQST 225
Query: 215 -LTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
+ R I+T+ +SG + +
Sbjct: 226 GMVGRKQPLKLIITTAGETISGPAHSKQREVE 257
>gi|242237694|ref|YP_002985875.1| DNA-dependent helicase II [Dickeya dadantii Ech703]
gi|242129751|gb|ACS84053.1| DNA helicase II [Dickeya dadantii Ech703]
Length = 720
Score = 40.7 bits (93), Expect = 0.64, Method: Composition-based stats.
Identities = 37/334 (11%), Positives = 91/334 (27%), Gaps = 41/334 (12%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGISVICL 113
+ ++ ++ ++V P + + AG G GKT + + WL++ P +
Sbjct: 5 DLLDSLNDKQRDAVAAPRSNML---VLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVT 61
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ + +H + + W + + H+
Sbjct: 62 FTNKAAAE---------------MRHRIDQLIGTSQGGMWIGTFHGLAHRLLRAHHLDAG 106
Query: 174 RTYSEERPDTFVGHH-NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ D+ + +N + P + + + I
Sbjct: 107 LPQDFQILDSEDQLRLLKRLIKALNLDEKQWPPRQAMWYINGKKDEGLRPHHI-----DS 161
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
+ + + ++ +Q +D + L+ +F
Sbjct: 162 YGNPVEQTWLRV---YQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRDRFTNIL 218
Query: 293 IDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD----W 348
+D F N I+ A R D +I+G D+ + RG +E++ +
Sbjct: 219 VDEFQDTNRIQYAWIRLLAGDSARVMIVG-------DDDQSIYGWRGAQVENIQHFLRDF 271
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
+ + +I N
Sbjct: 272 QQVETIRLEQNYRSTATILNAANALIAHNGDRLG 305
>gi|294778788|ref|ZP_06744207.1| phage terminase, large subunit, PBSX family [Bacteroides vulgatus
PC510]
gi|294447444|gb|EFG16025.1| phage terminase, large subunit, PBSX family [Bacteroides vulgatus
PC510]
Length = 422
Score = 40.7 bits (93), Expect = 0.66, Method: Composition-based stats.
Identities = 39/349 (11%), Positives = 96/349 (27%), Gaps = 45/349 (12%)
Query: 80 GAISAGRGIGKTTLNAWLV--LWLMSTRPGI---SVICLANSETQLKTTLWAEVSKWLSL 134
I+ GRG GK+ + + L T ++ + ++ E+ +
Sbjct: 20 ILITGGRGSGKSFNASTFIERLTFEMTPVEKIVHQILYTRYTMVSAGMSIIPEMME---- 75
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
++ + + S+ +T S +
Sbjct: 76 -------KIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSI--QGITT 126
Query: 195 IINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------ 247
+ DEA + I+ + ++ I+ NP + Y+ + +
Sbjct: 127 FVCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDG 186
Query: 248 --------WKRFQIDTR---TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
I T ++ + P F + + + + V G++ +
Sbjct: 187 VQVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVSNPEKYAHVVIGRWADVAEGAV 246
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
I + + G D + + +L + +
Sbjct: 247 FKKWGIVDEFPAWAK-----KIAFGQDFGYTHDPSASIRCGIVDNALYLDEVDYRTGLLS 301
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVD 405
++ I L RP + + A++ R + G +Y V +++
Sbjct: 302 SDIIKTL----RPWGLKVIADSADPRLIQEIHNGGIKIYAVEKGAGSIN 346
>gi|169775993|ref|XP_001822463.1| helicase mug81 [Aspergillus oryzae RIB40]
gi|83771198|dbj|BAE61330.1| unnamed protein product [Aspergillus oryzae]
Length = 1998
Score = 40.7 bits (93), Expect = 0.66, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 43/146 (29%), Gaps = 12/146 (8%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W PG V+ +A + ++ + +
Sbjct: 1154 HTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGSKVVYIAPMKALVRERVHDWKKRLTG 1212
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+ K E+ + D + + + + R++
Sbjct: 1213 PMGLK-LVELTGDNTPDTRTIRDADI--IITTPEKWDGISRSWQTRDYVR-------KVS 1262
Query: 194 AIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1263 LVIIDEIHLLGGDRGPILEIIVSRMN 1288
>gi|296274267|ref|YP_003656898.1| type III restriction protein res subunit [Arcobacter nitrofigilis
DSM 7299]
gi|296098441|gb|ADG94391.1| type III restriction protein res subunit [Arcobacter nitrofigilis
DSM 7299]
Length = 1044
Score = 40.7 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 39/232 (16%), Positives = 67/232 (28%), Gaps = 36/232 (15%)
Query: 13 QKLFDLMWSDEIKLSF-------SNFVLHFFPWGEKGTPLEGFSA-PRSWQLEFMEVVDA 64
+K FD W D+ +F + L +K F P +Q E +E ++A
Sbjct: 272 KKTFDTYWEDKEFETFTKVDTTKLHQALKSSGIKDKNIASTYFELKPFHYQEEILEQLEA 331
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
FK I A G GKT ++A+ + ++ +A
Sbjct: 332 QRKIHNR------FKNLIVAATGTGKTVISAFDYKRFKNLNSKAKLLFVA---------- 375
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
K L + + I ++H +T +
Sbjct: 376 -------HRKEILKQALATFRGVLRDNNFGELWVDGETAISNEHLFVSVQT--LQNNIGN 426
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ Y II DE L + N +T+ P R+ +
Sbjct: 427 LNLSKEYYDFIIIDEVHHIS---ANSYRPILEKFNPKILLGLTATPERMDNE 475
>gi|242036511|ref|XP_002465650.1| hypothetical protein SORBIDRAFT_01g042980 [Sorghum bicolor]
gi|241919504|gb|EER92648.1| hypothetical protein SORBIDRAFT_01g042980 [Sorghum bicolor]
Length = 2084
Score = 40.7 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT +L L +T P + V+ +A LK + ++ W L +
Sbjct: 1302 VLLGAPTGSGKTISAELAMLHLFNTHPDMKVVYIAP----LKAIVRERMNDWRKRLVTQL 1357
Query: 140 WFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+M + + + + + + R +
Sbjct: 1358 GKKMVEMTGDFTPDLMALLSADIIISTPEKWDGISRNWHSRS 1399
>gi|225573276|ref|ZP_03782031.1| hypothetical protein RUMHYD_01467 [Blautia hydrogenotrophica DSM
10507]
gi|225039408|gb|EEG49654.1| hypothetical protein RUMHYD_01467 [Blautia hydrogenotrophica DSM
10507]
Length = 558
Score = 40.7 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 47/352 (13%), Positives = 92/352 (26%), Gaps = 40/352 (11%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFF----PWGEKGTPLEGFSAPRSWQLEF 58
R+L T+ K D ++S E+ F+ W K L WQ +
Sbjct: 27 RKLKKYRPTKFKAKDSVYSQEMADYAVAFIECLCHTKGTWAGKPFELI------DWQEQI 80
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANS 116
+ + + + I + GK+ L A + L L V A
Sbjct: 81 IRDLFGTLKPNGYR---QFNTAYIEIPKKQGKSELAAAVALLLCCGDGEERAEVYGCAAD 137
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
Q + ++ + + + P ++ L+ Y + ++ YS
Sbjct: 138 RQQA-SIVFEVAADMVRMCPA-LSKRVKILASQKRIIYQPTNSFYQVLSAEAYSKHGFNI 195
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
F H + + G+ D + +T + I ++
Sbjct: 196 ---HGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTNSICYETHQKAKDI 252
Query: 237 FYEIFNKP-----------LDDWKRFQIDTRTVEGID--------PSFHEGIIARYGLDS 277
P DDW ++ + +D + E G
Sbjct: 253 LEGRKIDPTFYPVIYGAEESDDWTDPKVWKKANPSLDITVGIDKVKAACESAKQNPGE-E 311
Query: 278 DVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ R Q+ +Q + A G D++
Sbjct: 312 NSFRQLRLNQWVKQAVRWMPMEKWDACAFPVSEDDLEGRICYGGLDLSSTTD 363
>gi|307943761|ref|ZP_07659105.1| putative phage terminase, large subunit [Roseibium sp. TrichSKD4]
gi|307773391|gb|EFO32608.1| putative phage terminase, large subunit [Roseibium sp. TrichSKD4]
Length = 596
Score = 40.7 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 35/349 (10%), Positives = 81/349 (23%), Gaps = 52/349 (14%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVICLANSETQLKTTL 124
+V + G+G GK+ + A + + + P V A+ + Q L
Sbjct: 94 WKNVETGLRRFRRFYDEEGKGNGKSPMLAGIGIVGLVKEREPRAEVYAAASKKDQA-QIL 152
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ + + P SL D ++ + + S++ +
Sbjct: 153 FKDAVAMVDQSP--------SLKSRIKQLGIDPVYSLVYRAGDGGKREFKPISKDSGQS- 203
Query: 185 VGHHNTYGMAIINDEAS-GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN- 242
+ DE + R + T++ + YE
Sbjct: 204 ----GPRPSMALCDEVHEHRDRSTIEMLERGFKFRKQPLLCMATNSGTDRNSICYEEHTH 259
Query: 243 ---------------------KPLDDWKRFQIDTRTVEGIDPS---------FHEGIIAR 272
DDW+ + S +
Sbjct: 260 AINVAAGLVEDDTTFAFVCSLDEDDDWENDPSCWGKPNPLLGSILTEKYLALQVDQAKKM 319
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC--PDPYAPLIMGCDIAEEGGD 330
G + + R+ ++ + +F + E + G D++
Sbjct: 320 PGKRNGIARLHF-CEWTDAETAAFSRATWMGCLGEVEMASLVEAGYRCFGGLDLSRVRDF 378
Query: 331 NTVVVLRRGPVIEHLFDWSKTDLRTT-NNKISGLVEKYRPDAIIIDANN 378
+ ++ T N + + R +
Sbjct: 379 TAFTLTWVLDEARDSQVFASKTWFWTPKNTLRQRAAEDRVPYDRWVDDG 427
>gi|289670782|ref|ZP_06491857.1| DNA-dependent helicase II [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 728
Score = 40.3 bits (92), Expect = 0.69, Method: Composition-based stats.
Identities = 49/378 (12%), Positives = 100/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 14 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 60 VTFT---NKAAGEM---------RHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 107
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + S P + + I
Sbjct: 108 PEGFQVMDSDDQLRLVKRVVQSLELDESKYPPKQMSWWINEQKDEGRRPQHIQPEPNDDW 167
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ + +D + D+ +F + +
Sbjct: 168 TEVRRQVYAAYQER-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 220
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 221 DEFQDTNAIQYAFVRVLAGESGNVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 271
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 272 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGDGDPIDLYAAYNEV 328
Query: 414 TEL---HVKMADWLEFAS 428
E W+
Sbjct: 329 DEARYVVEGARQWVRDGG 346
>gi|229017468|ref|ZP_04174369.1| Terminase large subunit [Bacillus cereus AH1273]
gi|229023684|ref|ZP_04180176.1| Terminase large subunit [Bacillus cereus AH1272]
gi|228737609|gb|EEL88113.1| Terminase large subunit [Bacillus cereus AH1272]
gi|228743792|gb|EEL93893.1| Terminase large subunit [Bacillus cereus AH1273]
Length = 564
Score = 40.3 bits (92), Expect = 0.71, Method: Composition-based stats.
Identities = 28/302 (9%), Positives = 73/302 (24%), Gaps = 22/302 (7%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTRPGIS 109
P S Q + + K GR K+ +L M+ +S
Sbjct: 76 PHSIQTFVFSNIYGWVHRNTG--LRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMS 133
Query: 110 VICLANSETQLKTTLWAEVSKWLSLL--------PNKHWFEMQSLSLHPAPWYSDVLHCS 161
+ + ++ + +W E+ ++ + + D
Sbjct: 134 EVYIGATKAEQSKIVWNEIKAQMNGCEDLKGKFNIAYGKIQHTKTDSFISALSKDAGKSG 193
Query: 162 LGIDS-----KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL---G 213
G++ Y + + + G + M II +
Sbjct: 194 DGLNVQCGIIDEYHAHTTSEIYDVLVSGSGARSNPLMMIITTAGFNLSNPCYRVEYQYVS 253
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD-DWKRFQIDTRTVEGIDPSFHEGIIAR 272
+ + N + K EI N + + +
Sbjct: 254 KILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGRSFLKGELQSALDV 313
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD-PYAPLIMGCDIAEEGGDN 331
+ + ++ + ++ + ++ D +G D++ +
Sbjct: 314 PEKMRN-YLTKNMNRWVDMKENGYMDMQKWKDCKETVELSDLKGLECTVGVDLSAKIDLT 372
Query: 332 TV 333
+V
Sbjct: 373 SV 374
>gi|291565642|dbj|BAI87914.1| arsenite-antimonite (ArsAB) efflux family [Arthrospira platensis
NIES-39]
Length = 637
Score = 40.3 bits (92), Expect = 0.72, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 7/148 (4%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G+GKTTL L L S P ++ L+ +L + + PN + +
Sbjct: 18 GVGKTTLACGLALHWASQFPDDRILLLSTDPAH---SLGDVLQMQVDNTPNHVAASVDFV 74
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
L + H L + Y + + + + E G ++
Sbjct: 75 PLPNLSIRALDAHILLKDFKERYGDTLQLL----VERGSFVEGEDLTPVWDLEWPGVDEL 130
Query: 207 INLGILGFLTERNANRFWIMTSNPRRLS 234
+ L + L + N ++ P +
Sbjct: 131 MGLLEIQRLFDENLIDRVVVDMAPSGHA 158
>gi|284051493|ref|ZP_06381703.1| arsenite-activated ATPase ArsA [Arthrospira platensis str. Paraca]
Length = 637
Score = 40.3 bits (92), Expect = 0.72, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 7/148 (4%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G+GKTTL L L S P ++ L+ +L + + PN + +
Sbjct: 18 GVGKTTLACGLALHWASQFPDDRILLLSTDPAH---SLGDVLQMQVDNTPNHVAASVDFV 74
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
L + H L + Y + + + + E G ++
Sbjct: 75 PLPNLSIRALDAHILLKDFKERYGDTLQLL----VERGSFVEGEDLTPVWDLEWPGVDEL 130
Query: 207 INLGILGFLTERNANRFWIMTSNPRRLS 234
+ L + L + N ++ P +
Sbjct: 131 MGLLEIQRLFDENLIDRVVVDMAPSGHA 158
>gi|242780873|ref|XP_002479687.1| signal sequence receptor alpha subunit, putative [Talaromyces
stipitatus ATCC 10500]
gi|218719834|gb|EED19253.1| signal sequence receptor alpha subunit, putative [Talaromyces
stipitatus ATCC 10500]
Length = 644
Score = 40.3 bits (92), Expect = 0.72, Method: Composition-based stats.
Identities = 25/186 (13%), Positives = 56/186 (30%), Gaps = 11/186 (5%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + + A + P + +I G+GK+T + + +L+ + V
Sbjct: 414 DLLHEIQAVTAPTAKEQAPRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLVAACDTF 473
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L V L ++ E++ L+ + D + +
Sbjct: 474 RSGAVEQLRVHVRNLTELSARENIGEVE---LYEKGYGKDAANV---AKDAVAYGAANKF 527
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDV-----INLGILGFLTERNANRFWIMTSNPR 231
DT HN + ++ + + + ++G + A F R
Sbjct: 528 DVVLIDTAGRRHNDQRLMSSLEKFAKFANPDKIFMVGEALVGTDSVMQARNFNQAFGPGR 587
Query: 232 RLSGKF 237
L G
Sbjct: 588 NLDGFI 593
>gi|21233448|ref|NP_639365.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66770412|ref|YP_245174.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
str. 8004]
gi|21115293|gb|AAM43247.1| DNA helicase II [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66575744|gb|AAY51154.1| DNA helicase II [Xanthomonas campestris pv. campestris str. 8004]
Length = 728
Score = 40.3 bits (92), Expect = 0.73, Method: Composition-based stats.
Identities = 48/378 (12%), Positives = 101/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 14 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 60 VTFT---NKAAGEM---------RHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 107
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + + P + + I
Sbjct: 108 PEGFQVMDSDDQLRLVKRVVQSLELDETKYPPKQMGWWINEQKDEGRRPQHIQPEPNDDW 167
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ + +D + D+ +F + +
Sbjct: 168 TEVRRQVYAAYQER-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 220
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 221 DEFQDTNAIQYAFVRVLAGESGHVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 271
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 272 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGDGDPIDLYAAYNEV 328
Query: 414 TEL---HVKMADWLEFAS 428
E + W+
Sbjct: 329 DEARYVVERARQWVRDGG 346
>gi|242005506|ref|XP_002423606.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506754|gb|EEB10868.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 1199
Score = 40.3 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 23/194 (11%), Positives = 49/194 (25%), Gaps = 7/194 (3%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEV 61
S P+ E K+ + + +N G + W + +
Sbjct: 657 SSVSEKQPQVEFKVQNESVDPRDTSN-TNLNQFQKDIDSNGYVISSCKPELMWHSKNLNE 715
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK 121
+ +V + G GKT+ L++ + + PG ++ A +
Sbjct: 716 RQKMAVINVLKGQGRPLPYIVFGPPGTGKTSTLIELIIQIYTLIPGSRLLVCAPLNSAAD 775
Query: 122 TTLWAEVSK------WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ L L F + P+ + V + +
Sbjct: 776 LICERLIEIGKFKPGQLVRLIAFQRFLQDKVPPKLVPYSTLVSLEDDTGKNNESLKFKKN 835
Query: 176 YSEERPDTFVGHHN 189
+G H
Sbjct: 836 IRISSASQLIGRHR 849
>gi|326425005|ref|YP_004286227.1| putative DNA packaging protein B [Pseudomonas phage phi15]
gi|325048409|emb|CBZ42022.1| putative DNA packaging protein B [Pseudomonas phage phi15]
Length = 586
Score = 40.3 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 28/263 (10%), Positives = 65/263 (24%), Gaps = 33/263 (12%)
Query: 30 NFVLHFFP-WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGI 88
NF+ F W P+ Q + + + + + + A RGI
Sbjct: 16 NFIAFLFVLWAALNLPIPTKQ-----QQDMAKKLA----------QGDDRRFILQAFRGI 60
Query: 89 GKTTLNAWLVLWLMSTRPGISVICL-ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL- 146
GK+ + V+W + P + ++ + AN + +++ + + + LLP H + +
Sbjct: 61 GKSFITCAFVVWKLWNDPDLKIMIVSANKDRADANSVF--IKRIIDLLPFLHDLKPRQGQ 118
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
+ K N D
Sbjct: 119 RDSSLSFDVGPARPDHSPSVKSVGVTG----GMTGSRADILIADDVEVPGNSGTQSARDH 174
Query: 207 INLGIL--GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI-------DTRT 257
+ + + + ++ T + E W
Sbjct: 175 LGELVKEFDAILKPGGTIIYLGTPQTEMTLYRELEERGYTTTIWPARYPRDQADLESYFQ 234
Query: 258 VEGIDPSFHEGIIARYGLDSDVT 280
+ ++ D +
Sbjct: 235 PKQNRSRLAPKMLEELEADPRLF 257
>gi|188993614|ref|YP_001905624.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris
str. B100]
gi|167735374|emb|CAP53588.1| DNA helicase II [Xanthomonas campestris pv. campestris]
Length = 723
Score = 40.3 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 48/378 (12%), Positives = 101/378 (26%), Gaps = 49/378 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + + A
Sbjct: 9 QREAVSAPPGHYL--------------VLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 54
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ +H ++Q + W + + H+
Sbjct: 55 VTFT---NKAAGEM---------RHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARL 102
Query: 175 TYSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + + + + P + + I
Sbjct: 103 PEGFQVMDSDDQLRLVKRVVQSLELDETKYPPKQMGWWINEQKDEGRRPQHIQPEPNDDW 162
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ +++ + +D + D+ +F + +
Sbjct: 163 TEVRRQVYAAYQER-------CDRSGLLDFAELLLRAHELLRDTPALLAHYRARFREILV 215
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R + ++G D+ + RG +E++ + K
Sbjct: 216 DEFQDTNAIQYAFVRVLAGESGHVFVVG-------DDDQAIYGWRGAKVENVQRFLK--D 266
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
+ I+ AN A + +G ++ G +DL N
Sbjct: 267 FPGAQTVRLEQNYRSSANILGAAN---AVIAHNPDRIGKQLWTDSGDGDPIDLYAAYNEV 323
Query: 414 TEL---HVKMADWLEFAS 428
E + W+
Sbjct: 324 DEARYVVERARQWVRDGG 341
>gi|319427942|gb|ADV56016.1| Protein of unknown function DUF3427 [Shewanella putrefaciens 200]
Length = 1055
Score = 40.3 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 48/149 (32%), Gaps = 16/149 (10%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFV----------LHFFPWGEKGTPLEGFSAP 51
++E+P E F+ W FS G + + P
Sbjct: 261 TQEIPHIIEKSLSTFETYWQSNEFELFSGDANSKEKLNNALKEAKGSGTESSSFHFDIKP 320
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+ Q E +E + V FK I A G GKT ++A+ P + +
Sbjct: 321 FAHQREILEQLA------VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKLHPEANFL 374
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+A+ + L+ L A + + W
Sbjct: 375 FVAHRQEILQQALSAYRGVLKNNQFGELW 403
>gi|121714645|ref|XP_001274933.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
gi|119403087|gb|EAW13507.1| DEAD/DEAH box helicase, putative [Aspergillus clavatus NRRL 1]
Length = 2007
Score = 40.3 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 51/175 (29%), Gaps = 22/175 (12%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVF--------KGAISAGRGIGKTTLNAWLVLWLMSTR- 105
Q +E + N ++F + + G GKT + A L +W
Sbjct: 1127 QNPILEELYGQRFQFFNPMQTQIFHMLYHTSANVLLGSPTGSGKT-VAAELAMWWAFREK 1185
Query: 106 PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGI 164
PG V+ +A + ++ V W L + ++ + + +
Sbjct: 1186 PGSKVVYIAPMKALVRER----VQDWGKRLTGPMGLKLVELTGDNTPDTRTIRDADIIIT 1241
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + + R++ +I DE + ++ N
Sbjct: 1242 TPEKWDGISRSWQTRDYVR-------KVSLVIIDEIHLLGGDRGPILEIIVSRMN 1289
>gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
Length = 416
Score = 40.3 bits (92), Expect = 0.75, Method: Composition-based stats.
Identities = 46/300 (15%), Positives = 79/300 (26%), Gaps = 43/300 (14%)
Query: 33 LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT 92
L P + GFS P Q E + SA G GKT
Sbjct: 8 LELDPVLLEAIEEMGFSRPTQVQAEAIPQALD------------GRDVLASAPTGTGKTA 55
Query: 93 LNAWLVLWLMSTRP-----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
A L + P ++ L + AE ++ L+ + F +
Sbjct: 56 AFAIPALQYLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGV 113
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ + +T R + F +I DEA D+
Sbjct: 114 QYQEHADILATTQDIV-----VATPGRLLEYIDAERFD---CRAIEWLILDEADRMLDMG 165
Query: 208 NLGILGFLTERNANRF----WIMTSNPRRLSGKFYEIFNKP---------LDDWKRFQID 254
+ L+ R + T R + G ++ P + K Q
Sbjct: 166 FGPTVDRLSAECRWRKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWY 225
Query: 255 TRTVEGIDPSF-HEGIIARYGLDSDVT--RVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
R + + I+ S V E + + IP I+ + ++
Sbjct: 226 HRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMQQDRR 285
>gi|229176196|ref|ZP_04303687.1| phage terminase, large subunit [Bacillus cereus MM3]
gi|228607291|gb|EEK64622.1| phage terminase, large subunit [Bacillus cereus MM3]
Length = 540
Score = 40.3 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 49/389 (12%), Positives = 94/389 (24%), Gaps = 38/389 (9%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
EK P FS +WQ + + + GRG GK ++
Sbjct: 43 EKPAPYFSFSL-FAWQRFCNAFFYGVRYDDGRL---MFDRYLLLLGRGAGKNGYISYDCF 98
Query: 100 WLMSTRPGIS---VICLANSETQLKTTLWA-----EVSKWLSLL-----PNKHWFEMQSL 146
+++S GI + +A SE Q KT+ E K+ L +K +
Sbjct: 99 YMLSGHHGIKNYDIDIVATSEDQAKTSFEDVLNILETPKFAKKLKKVFYKSKKLIKHYKT 158
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEA-- 200
S+ Y + + +G + I +
Sbjct: 159 KSKFEFNTSNARTKDGKRSGTVIFDELHEYEDYSNIKVFTSGLGKKKDPRIFYITTDGNV 218
Query: 201 -SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
G D + L + + E W++ R E
Sbjct: 219 RGGVLDDMKDEAQMVLNKELPHSTLFPFICK-----LDDEKEVHDESMWEKANPSYRYNE 273
Query: 260 GIDPSFHEGIIARYGLDSDV---TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ +S + + + P
Sbjct: 274 NL-QHEMRKEYHDMKRNSALRIEFMTKRMNLPVEDTRKEVATYEERLATEQSFPENVQGI 332
Query: 317 PLIMGCDIAEEGGDNTV--VVLRRGPVI---EHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
I D A+ +V + + G + L+ N I + +
Sbjct: 333 ECIGAVDFAQIRDFCSVGILFKKDGNRYWKQHTFMHHTAPKLQDINPDIIRIAIEKGLLT 392
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
++ D + + D+ M+
Sbjct: 393 VVYDKSISAEHVRDWFVMMNKEYRIKKVS 421
>gi|115396706|ref|XP_001213992.1| hypothetical protein ATEG_04814 [Aspergillus terreus NIH2624]
gi|114193561|gb|EAU35261.1| hypothetical protein ATEG_04814 [Aspergillus terreus NIH2624]
Length = 2002
Score = 40.3 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W PG V+ +A + ++ V W
Sbjct: 1153 HTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWKK 1207
Query: 134 LLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L + ++ + + + + + + R++
Sbjct: 1208 RLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYVR-------KV 1260
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1261 SLVIIDEIHLLGGDRGPILEIIVSRMN 1287
>gi|91791668|ref|YP_561319.1| type III restriction enzyme, res subunit [Shewanella denitrificans
OS217]
gi|91713670|gb|ABE53596.1| type III restriction enzyme, res subunit [Shewanella denitrificans
OS217]
Length = 1051
Score = 40.3 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 39 GEKGTPLEGFS-APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
G F P + Q E +E + V + +K + A G GKT ++A+
Sbjct: 307 GYSDDSAFHFDIKPFAHQREILEQL------DVERTVHQRYKNLVVAATGTGKTLISAFD 360
Query: 98 VLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
P + + +A+ + LK L A + + W
Sbjct: 361 FARFYKQHPEANFLFVAHRQEILKQALSAYRGVLKNNQFGELW 403
>gi|332994948|gb|AEF05003.1| DNA helicase II [Alteromonas sp. SN2]
Length = 723
Score = 40.3 bits (92), Expect = 0.77, Method: Composition-based stats.
Identities = 47/393 (11%), Positives = 98/393 (24%), Gaps = 56/393 (14%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
++ ++ +V P I AG G GKT + + WLM LA +
Sbjct: 5 RLLDELNDKQREAVAAPLSNAL---ILAGAGSGKTRVLVHRIAWLMEVENIAPFSILAVT 61
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
T NK EM+ + + H
Sbjct: 62 FT------------------NKAAKEMRGRIESLMGRGLNNMWIGTFHGLAHRLLRAHHA 103
Query: 177 SEERPDTFVGHHNTYGMAII--NDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
P+ F + +I +A + + + P+ +
Sbjct: 104 EANLPENFQILDSDDQYRLIKRILKAMNLDEKHWVPRQIQWYINGNKDEGL---RPQHIE 160
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFH----EGIIARYGLDSDVTRVEVCGQFPQ 290
+ K + + +Q +D + + A+ +
Sbjct: 161 THNDQTQQKMREIYAAYQDACDRSGLVDFAELLLRAHELWAKNPEVLANYQRRFRAVLVD 220
Query: 291 Q-DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWS 349
+ + I + + +I G D+ + RG ++++ +
Sbjct: 221 EFQDTNNIQYAWLRMLCSGNQN-----------NIMIVGDDDQSIYGWRGANVDNIQHFL 269
Query: 350 K----TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKR--A 403
K + +ID N R L G +
Sbjct: 270 KDFNNPTTIRLEQNYRSTGTILKAANTVIDNN--TGRLGKELWTDGNDGEPISVYAGFNE 327
Query: 404 VDLEFCRNRRTELHVKMADWLEFASLINHSGLI 436
+D K+ DWL + + + ++
Sbjct: 328 LDEARFI------VSKIKDWLNQGNALKDTAIL 354
>gi|229824179|ref|ZP_04450248.1| hypothetical protein GCWU000282_01483 [Catonella morbi ATCC 51271]
gi|229786533|gb|EEP22647.1| hypothetical protein GCWU000282_01483 [Catonella morbi ATCC 51271]
Length = 550
Score = 40.3 bits (92), Expect = 0.77, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 77/243 (31%), Gaps = 40/243 (16%)
Query: 9 PETEQKLFDLMWSDEIKLSFSNFV-LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCL 67
E KL + +E + F +FF +Q + V
Sbjct: 33 EEVVLKLKGAYYDEEQIENCIKFAEKYFF-------------KLDLFQKYLIANVFLFYA 79
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG---ISVICLANSETQLKTTL 124
+ + A RG GK + + + +S G +V ANSE Q T+
Sbjct: 80 DGEVVFDEFFITMA----RGNGKNGFISVMANYFISPLHGIQEYNVAITANSENQAMTS- 134
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ EV L P+ L + ++ + +G+D++ Y T
Sbjct: 135 FKEVHNMLKRNPD----------LTDSGYFKNGTSKIIGLDTQSEFV----YRANNAATQ 180
Query: 185 VGHHNTYGMAIINDEASGTPD-VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
+ + DE D + L +R +R + + +N + ++ ++
Sbjct: 181 DSFRDG---CLFFDEIHQFEDYSVIDVQTSGLGKRKNSRTFYIGTNGFVRDSVYDDMCSR 237
Query: 244 PLD 246
D
Sbjct: 238 ARD 240
>gi|293401149|ref|ZP_06645293.1| putative phage terminase, large subunit [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305275|gb|EFE46520.1| putative phage terminase, large subunit [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 506
Score = 40.3 bits (92), Expect = 0.78, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 75/298 (25%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + + + +GK+ L A + L L V
Sbjct: 23 DWQEQIIRDIFGTLKPNGYR---QFNTAYVEIPKKMGKSELAAAVALLLTCGDGEERAEV 79
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q T ++ + + + P + ++ L+ Y + ++ YS
Sbjct: 80 YGCAADRQQA-TIVFDVAADMVRMCPALNK-RVKILASQKRIVYQPTNSFYQVLSAEAYS 137
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
F H + + G+ D + +T + I
Sbjct: 138 KHGFNI---HGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTNSICYETH 194
Query: 231 RRLSGKFYE-----------IFNKPLDDWKRFQIDTRTVEGI--------DPSFHEGIIA 271
++ DDW ++ + + + E
Sbjct: 195 QKAKDILEGRKIDPTFYPVIYGADESDDWTDPKVWKKANPSLGITVGIDKVKAACESAKQ 254
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
G + R Q+ +Q + + G D++
Sbjct: 255 NPGE-ENSFRQLRLNQWVKQAVRWMPMEKWDNCSFRVNEDDLEGRVCYGGLDLSSTTD 311
>gi|291010745|gb|ADD71733.1| terminase large subunit [Leuconostoc phage 1-A4]
Length = 548
Score = 40.3 bits (92), Expect = 0.79, Method: Composition-based stats.
Identities = 65/511 (12%), Positives = 136/511 (26%), Gaps = 63/511 (12%)
Query: 5 LPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWG----EKGTPLEGFSAPRSWQLEFME 60
+ + + L F G +KG E P Q+E
Sbjct: 17 MSIEAKQALDRIPQYLNKFEYDDTYPKALISFIEGFIYLQKGDDEESH--PMRLQVEQKF 74
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSET 118
++ + + + G G GK+T A L L +M G VI L+NS
Sbjct: 75 WLELFGFVDPDTHRQIINDIGLVIGAGSGKSTFMAALSLAVMMVGSYKGNDVIVLSNSIK 134
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
Q + S+ + + L P + I+ + +
Sbjct: 135 QSHE-TFRTASEMAGDERSVLGDLKKHELLKPILGKIKYAPTNSQIEIRAMDNNTLDGTN 193
Query: 179 ERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
R F H+ + I N S P N G N + + + ++
Sbjct: 194 VRLAIFDEFHSYHINVIENVRKSSAPKRKNTGFTTVYISTNGQVRDSVFDDYYK---RWE 250
Query: 239 EIFNKPLDDWKRFQIDTRT------------------VEGIDPSFHEGIIARYGLDSDVT 280
+I ++DW F + + V I + + V
Sbjct: 251 KILAGEIEDWSTFPMIYKMDDVEEVTNPDLYEKAMPFVRNISDPQIIKDMLAKTQGNPVA 310
Query: 281 RVEVC---GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLR 337
+ E+ PQ ++ + +E A + + +G D +E + ++
Sbjct: 311 QAEILAKSFNIPQSSFNALFTTDELE-ATREIQDVEWGNEVTIGSDFSEVEDLTAISIMW 369
Query: 338 R---GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHV 394
R + + +K L+ + + A D + +
Sbjct: 370 RNENKLRTRNFAFLPENTFENKTSKAQRLMYVRLINEGSLILTKGSAIDQDEVYEWLDNY 429
Query: 395 Y------RVLGQKRAVDLEFCRNRRTE-----LHVKMAD--------------WLEFASL 429
+ A + + R T+ ++ K+ +
Sbjct: 430 IQENRLMPIGFGGDAFFSKAYQRRVTQDYGEGMYTKIRQNVMSLSQPLKTVKARIAGGDF 489
Query: 430 INHSGLIQNLKSLKSFIVPNTGELAIESKRV 460
+ L+ + + + +K+
Sbjct: 490 QSDDDLLLWALNNLRVKIDANNNI-YPNKQK 519
>gi|163731339|ref|ZP_02138786.1| hypothetical protein RLO149_18584 [Roseobacter litoralis Och 149]
gi|161394793|gb|EDQ19115.1| hypothetical protein RLO149_18584 [Roseobacter litoralis Och 149]
Length = 286
Score = 40.3 bits (92), Expect = 0.79, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 33/265 (12%)
Query: 82 ISAGRGIGKTTLNAWLVLWL------MSTRPGISVICLANSETQLKTTLWAEVSKWLSLL 135
I GRG GKT A V + V + + Q++ + S L+
Sbjct: 16 IMGGRGAGKTRAGAEWVRAQVEGARPLDEGRSRRVALVGETIEQVREVMIFGDSGILACS 75
Query: 136 PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAI 195
P ++ + A
Sbjct: 76 PPDRRPVWEAGRKRL------------------VWPNGAIATIHSAFDPEELRGPQFDAA 117
Query: 196 INDEASGTPDVINLGILGFLTER-NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
DE + + + R +T+ PR + + K
Sbjct: 118 WVDELAKWKKAQDTWDMLQFALRLGDKPQVCVTTTPRNVG--VLKTLMKSPSTVSSHAPT 175
Query: 255 TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDP 314
+ SF E + ARY + + R E+ G + + IE R
Sbjct: 176 EANAANLARSFLEEVRARYA-GTRLGRQELDGVLLEDAEGALWTTAGIEG--IRCEKAPE 232
Query: 315 YAPLIMGCDIAEE---GGDNTVVVL 336
+++ D + D +++
Sbjct: 233 LDRIVVAVDPSTTSGANSDECGIIV 257
>gi|209876996|ref|XP_002139940.1| ATPase family protein [Cryptosporidium muris RN66]
gi|209555546|gb|EEA05591.1| putative ATPase family protein [Cryptosporidium muris RN66]
Length = 1072
Score = 40.3 bits (92), Expect = 0.80, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 44/153 (28%), Gaps = 11/153 (7%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q + + + N N ++++GRG GK+ L L + ++ +
Sbjct: 284 QAQAVVHLMDTIFNKDLN-----ATISLTSGRGRGKSAAL-GLALSGAISYGYSNIFITS 337
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC- 173
+ T +SL +H S + +
Sbjct: 338 PYPENVSTVFEFVEVGLISLGYTEHKHFELIRSKILTDIRVGGGKSHVNSHLIRINIFKE 397
Query: 174 --RTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+T P+ + ++ DEA+ P
Sbjct: 398 HRQTIQYISPEDYKLVSQAE--LVVMDEAAAIP 428
>gi|149882960|ref|YP_001294897.1| helicase [Burkholderia phage BcepNY3]
gi|148763611|gb|ABR10594.1| helicase [Burkholderia phage BcepNY3]
Length = 613
Score = 40.3 bits (92), Expect = 0.81, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 27/185 (14%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
PR +Q E + + + N ++ G GK+ LNA L+ + T P
Sbjct: 4 KTPRWYQAEAADELFGALATAKN---TNPIAAIVTGG---GKSLLNAMLIERIAQTWPQA 57
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V+ LA S +K + + W + + L + H
Sbjct: 58 RVMSLAPSMELIKQNVEEARAFWSPAMVARLGIYCAGLRMKDRM---------------H 102
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS--GTPDVINLGILGFLTERNANRFWIM 226
S ++ DEA I+ N + ++
Sbjct: 103 QYIFATPQSV----ARQAKRFGPFDFVLVDEAHLFNIDMKTARTIVDTFRAANPHVRFVG 158
Query: 227 TSNPR 231
+
Sbjct: 159 MTATD 163
>gi|145249212|ref|XP_001400945.1| helicase mug81 [Aspergillus niger CBS 513.88]
gi|134081623|emb|CAK46557.1| unnamed protein product [Aspergillus niger]
Length = 1991
Score = 40.3 bits (92), Expect = 0.81, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W PG V+ +A + ++ V W
Sbjct: 1155 HTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWKK 1209
Query: 134 LLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L + ++ + + + + + + R++
Sbjct: 1210 RLTAPMGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYVR-------KV 1262
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1263 SLVIIDEIHLLGGDRGPILEIIVSRMN 1289
>gi|221134097|ref|ZP_03560402.1| DNA helicase II [Glaciecola sp. HTCC2999]
Length = 722
Score = 40.3 bits (92), Expect = 0.81, Method: Composition-based stats.
Identities = 51/357 (14%), Positives = 94/357 (26%), Gaps = 40/357 (11%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I AG G GKT + + WLM LA + T NK
Sbjct: 27 ILAGAGSGKTRVLVHRIAWLMEVENLSPFSILAVTFT------------------NKAAR 68
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII--NDE 199
EM+ + H P+ F + +I +
Sbjct: 69 EMRGRIEQLKGQSLHHMWIGTFHGLAHRLLRAHYAEANLPENFTILDSDDQHRLIKRIIK 128
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
+ + + P+ + K D ++ +Q
Sbjct: 129 SMNLDEKDWPAKQSQWYINGNKDEGL---RPKDIDTYGDANQQKMRDIYQAYQQTCDRSG 185
Query: 260 GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLI 319
ID + D+D R +F +D F N I+ A R +I
Sbjct: 186 LIDFAELLLRAYELWRDNDRIRQHYQERFRAVLVDEFQDTNNIQYAWLRLLSAPSNNMMI 245
Query: 320 MGCDIAEEGGDNTVVVLRRGPVIEHL----FDWSKTDLRTTNNKISGLVEKYRPDAIIID 375
+G D+ + RG +E++ D+ D + +ID
Sbjct: 246 VG-------DDDQSIYGWRGANVENISHFLKDFPSADTIRLEQNYRSTGHILKAANAVID 298
Query: 376 ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINH 432
N + E ++ +D ++ +W++ ++
Sbjct: 299 NNAGRLGKELWTEDADGEKIKLYAGFNELDEARFI------VARIKEWMDQGYALSD 349
>gi|255723341|ref|XP_002546604.1| hypothetical protein CTRG_06082 [Candida tropicalis MYA-3404]
gi|240130735|gb|EER30298.1| hypothetical protein CTRG_06082 [Candida tropicalis MYA-3404]
Length = 1926
Score = 40.3 bits (92), Expect = 0.82, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 14/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W P V+ +A + ++ V W +
Sbjct: 1132 VFVGSPTGSGKT-VVAELAIWHAFNEFPSSKVVYIAPMKALVRER----VDDWRERI--- 1183
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIIN 197
++ + D L + + + +I
Sbjct: 1184 ----CKNTAHRLVELTGDSLPSVHEVKEADIIITTPEKFDGISRNWQTRKFVQQVSLVIM 1239
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + ++ N
Sbjct: 1240 DEIHLLASDRGPILEMIVSRMN 1261
>gi|89900818|ref|YP_523289.1| ATP-dependent DNA helicase DinG [Rhodoferax ferrireducens T118]
gi|89345555|gb|ABD69758.1| Helicase c2 [Rhodoferax ferrireducens T118]
Length = 716
Score = 40.3 bits (92), Expect = 0.82, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 55/214 (25%), Gaps = 10/214 (4%)
Query: 25 KLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGA--I 82
+ L F T R Q + + + + + E K I
Sbjct: 3 TDDLAGLSLAAFDQMVDATAGFRS---RPGQRDMAQQIASALSGVTLGEHAEPNKSIAVI 59
Query: 83 SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS--ETQLKTTLWAEVSKWLSLLPNKHW 140
AG G+GK+ + L R VI A + QL T ++ L
Sbjct: 60 QAGTGVGKSAAYLATTVALALARKTRVVISTATVALQEQLMTKDLPALAAVLESPFVFAL 119
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH---HNTYGMAIIN 197
+ + + ++ + + T M + +
Sbjct: 120 AKGRGRYVCKFKLERLAGPGGDELNEELFGVDEDTPPTRAAFAAQLQGVDPEERRMKLYD 179
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
A+ G L E+ R W + R
Sbjct: 180 ALATALSQGKWDGDRDKLAEQPDARDWSAVAAER 213
>gi|134300446|ref|YP_001113942.1| phage terminase [Desulfotomaculum reducens MI-1]
gi|134053146|gb|ABO51117.1| phage Terminase [Desulfotomaculum reducens MI-1]
Length = 558
Score = 40.3 bits (92), Expect = 0.83, Method: Composition-based stats.
Identities = 44/330 (13%), Positives = 90/330 (27%), Gaps = 39/330 (11%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP----GI 108
W+L ++ + ++ I GRG GK + + W ++T G
Sbjct: 71 DWELFVTALIHCYYKSN---DTVVFSTIFIMMGRGNGKNGFISPVA-WYLTTHYHGVKGY 126
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEM---------QSLSLHPAPWYSDVLH 159
++ +AN+E Q KT+ + +V + L K + + S+
Sbjct: 127 NIDIVANAEDQAKTS-FNDVYEVLERTWKKSKKFFYKSKEVIVNTKTNSYIKFNTSNAKT 185
Query: 160 CSLGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEA---SGTPDVINLGIL 212
Y + G I G D +
Sbjct: 186 KDSKRTGCLIFDEVHGYETYDNIKVFTSGFGKRKHSRAFYITTNGNVREGVLDDMLAIAA 245
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP---SFHEGI 269
L + W+ E + W + R + + +
Sbjct: 246 DILNGTIKDLGWLPLIYRIDS-----EEEALDPNMWHKANPSLRFFPELQKEMQNEFIEM 300
Query: 270 IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD-PYAPLIMGCDIAEEG 328
+ ++ + + +P+Q+ I +P PD Y + G D ++
Sbjct: 301 KYKPAIEEEFYTKRL--NWPRQN-REIIVTEWDNIKATNKPLPDLSYRTCVAGIDYSKIT 357
Query: 329 GDNTV-VVLRRGP-VIEHLFDWSKTDLRTT 356
+V + R G + W +
Sbjct: 358 DFASVNLHFREGDIRYDINHSWLCLNSADL 387
>gi|23752366|ref|NP_705681.1| gp58 [Burkholderia phage Bcep781]
gi|23507233|gb|AAN38056.1| gp58 [Burkholderia phage Bcep781]
Length = 614
Score = 40.3 bits (92), Expect = 0.83, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 27/185 (14%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
PR +Q E + + + N ++ G GK+ LNA L+ + T P
Sbjct: 4 KTPRWYQAEAADELFGALATAKN---TNPIAAIVTGG---GKSLLNAMLIERIAQTWPQA 57
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V+ LA S +K + + W + + L + H
Sbjct: 58 RVMSLAPSMELIKQNVEEARAFWSPAMVARLGIYCAGLRMKDRM---------------H 102
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS--GTPDVINLGILGFLTERNANRFWIM 226
S ++ DEA I+ N + ++
Sbjct: 103 QYIFATPQSV----ARQAKRFGPFDFVLVDEAHLFNIDMKTARTIVDTFRAANPHVRFVG 158
Query: 227 TSNPR 231
+
Sbjct: 159 MTATD 163
>gi|330796515|ref|XP_003286312.1| hypothetical protein DICPUDRAFT_150267 [Dictyostelium purpureum]
gi|325083739|gb|EGC37184.1| hypothetical protein DICPUDRAFT_150267 [Dictyostelium purpureum]
Length = 2271
Score = 40.3 bits (92), Expect = 0.84, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 47/172 (27%), Gaps = 6/172 (3%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
M ++ N+V+ + G GKT L L+ L++ P ++ A S
Sbjct: 1370 MNALNDQQRNAVDQSLFSEGITLVHGLTGTGKTHLVLNLISILLAVNPNFKILVCAPSHG 1429
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSE 178
+ + K N + + S +H + + +
Sbjct: 1430 SVDEIS-RRLMKSKFYSNNMEQYSPVITRIGSLENISKDIHPICLLGKESKIRANTLKNT 1488
Query: 179 E-----RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI 225
+ + + + I T I+ + N + +
Sbjct: 1489 NICLSTLSASAMDFRRNHFIPSIIIIDDATQSCEISTIIPLASSSNVKKLIL 1540
>gi|195380381|ref|XP_002048949.1| GJ21324 [Drosophila virilis]
gi|194143746|gb|EDW60142.1| GJ21324 [Drosophila virilis]
Length = 1366
Score = 40.3 bits (92), Expect = 0.84, Method: Composition-based stats.
Identities = 38/367 (10%), Positives = 88/367 (23%), Gaps = 51/367 (13%)
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
+ G+GKT + + ++ L P +I +A +
Sbjct: 62 YQHSIVQAALYRNTLVVLPTGLGKTFIASVVMYNLYRWYPKSKLIFMAPTR--------P 113
Query: 127 EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
VS+ ++ F + + L + + + + + DT G
Sbjct: 114 LVSQQIAACQKIMPFPAEDT-VELTGRLPRAKRAELWLSKRVFFATPQVVQSDMLDTGDG 172
Query: 187 HHNTYGM--AIINDEASGTPDVINLG-ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNK 243
Y ++ DEA + + RN + S + +
Sbjct: 173 MQFPYMSIKLLVVDEAHRAKGRYAYTQVTESIMARNPYFRMLALSATPGRTMDDVAAVCR 232
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIE 303
I V D + + + + V ++ + P+ + I + +
Sbjct: 233 N------LYISHLEVRWEDSIDVRQYVHKRSMRTIVVPLKDRIKEPRARLLEIIDPYLRQ 286
Query: 304 EALNREPCPDPY--APLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKIS 361
+ + D + + R + + IS
Sbjct: 287 LIAANVLKNARGNISRNNLLYDQSRFQ-ERVANGERHPEHSLIVSN--------FAMCIS 337
Query: 362 GLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA 421
+ LE G V+ + + V +
Sbjct: 338 LYHAM------------------ELLERHGLRVFVNNFDADEHGRDKFV-LKD---VALR 375
Query: 422 DWLEFAS 428
+ +E
Sbjct: 376 ELVEHVR 382
>gi|41057709|ref|NP_958163.1| gp57 [Burkholderia phage Bcep43]
gi|40737696|gb|AAR89349.1| gp57 [Burkholderia phage Bcep43]
Length = 614
Score = 40.3 bits (92), Expect = 0.84, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 27/185 (14%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
PR +Q E + + + N ++ G GK+ LNA L+ + T P
Sbjct: 4 KTPRWYQAEAADELFGALATAKN---TNPIAAIVTGG---GKSLLNAMLIERIAQTWPQA 57
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V+ LA S +K + + W + + L + H
Sbjct: 58 RVMSLAPSMELIKQNVEEARAFWSPAMVARLGIYCAGLRMKDRM---------------H 102
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS--GTPDVINLGILGFLTERNANRFWIM 226
S ++ DEA I+ N + ++
Sbjct: 103 QYIFATPQSV----ARQAKRFGPFDFVLVDEAHLFNIDMKTARTIVDTFRAANPHVRFVG 158
Query: 227 TSNPR 231
+
Sbjct: 159 MTATD 163
>gi|38638667|ref|NP_944368.1| gp60 [Burkholderia phage Bcep1]
gi|34486049|gb|AAQ73406.1| gp60 [Burkholderia phage Bcep1]
Length = 614
Score = 40.3 bits (92), Expect = 0.84, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 51/185 (27%), Gaps = 27/185 (14%)
Query: 49 SAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI 108
PR +Q E + + + N ++ G GK+ LNA L+ + T P
Sbjct: 4 KTPRWYQAEAADELFGALATAKN---TNPIAAIVTGG---GKSLLNAMLIERIAQTWPQA 57
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
V+ LA S +K + + W + + L + H
Sbjct: 58 RVMSLAPSMELIKQNVEEARAFWSPAMVARLGIYCAGLRMKDRM---------------H 102
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS--GTPDVINLGILGFLTERNANRFWIM 226
S ++ DEA I+ N + ++
Sbjct: 103 QYIFATPQSV----ARQAKRFGPFDFVLVDEAHLFNIDMKTARTIVDTFRAANPHVRFVG 158
Query: 227 TSNPR 231
+
Sbjct: 159 MTATD 163
>gi|265756326|ref|ZP_06090655.1| PBSX family phage terminase, large subunit [Bacteroides sp.
3_1_33FAA]
gi|263233917|gb|EEZ19526.1| PBSX family phage terminase, large subunit [Bacteroides sp.
3_1_33FAA]
Length = 422
Score = 40.3 bits (92), Expect = 0.85, Method: Composition-based stats.
Identities = 42/367 (11%), Positives = 100/367 (27%), Gaps = 53/367 (14%)
Query: 80 GAISAGRGIGKTTLNAWLV--LWLMSTRPGI---SVICLANSETQLKTTLWAEVSKWLSL 134
I+ GRG GK+ + + L T ++ + ++ E+ +
Sbjct: 20 ILITGGRGSGKSFNASTFIERLTFEMTPVEKIVHQILYTRYTMVSAGMSIIPEMME---- 75
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
++ + + S+ +T S +
Sbjct: 76 -------KIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSI--QGITT 126
Query: 195 IINDEASGT-PDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------ 247
+ DEA + I+ + ++ I+ NP + Y+ + +
Sbjct: 127 FVCDEAEEWTSEDEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLVEIDG 186
Query: 248 --------WKRFQIDTR---TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
I T ++ + P F + + + + V G++ +
Sbjct: 187 VQVQISTHPNVLHIHTTYFDNLDNLSPEFLKEVEDMKVGNPEKYAHVVIGRWADVAEGAV 246
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
I + + G D + + +L + +
Sbjct: 247 FKKWGIVDEFPAWAK-----KIAFGQDFGYTHDPSASIRCGIVDNALYLDEVDYRTGLLS 301
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA--------VDLEF 408
++ I L RP + + A++ R + G +Y V + D+E
Sbjct: 302 SDIIKTL----RPWGLKVIADSADPRLIQEIHNGGIKIYAVEKGAGSINAGIDKMKDMEI 357
Query: 409 CRNRRTE 415
+R+
Sbjct: 358 YITKRSY 364
>gi|296412400|ref|XP_002835912.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629709|emb|CAZ80069.1| unnamed protein product [Tuber melanosporum]
Length = 1952
Score = 40.3 bits (92), Expect = 0.88, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 43/149 (28%), Gaps = 18/149 (12%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + L +W PG V+ +A + ++ V W +
Sbjct: 1127 HTPSNVLLGSPTGSGKT-IACELAMWWAFRENPGSKVVYIAPMKALVRER----VKDWNA 1181
Query: 134 LL---PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
L + E+ + D + + + + R++
Sbjct: 1182 RLTAPMSLKLVELTGDNTPDTRTIHDADI--IITTPEKWDGISRSWQTRNYVR------- 1232
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1233 QVSLVIIDEIHLLGGDRGPILEIIVSRMN 1261
>gi|314994361|ref|ZP_07859653.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
gi|313591226|gb|EFR70071.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
Length = 564
Score = 40.3 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 49/448 (10%), Positives = 119/448 (26%), Gaps = 46/448 (10%)
Query: 12 EQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLN 68
EQ L + + + E + P W+ +
Sbjct: 27 EQLLLKNYLEERVFTR--EDIYFDKQMVEDSINIPAQYFPFELIPWEKFLQCFIYGVRWK 84
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---VICLANSETQLKTTLW 125
+ + GRG GKT +W +L++ + GI + AN+E+Q KT+ +
Sbjct: 85 K--DKTLVFNRYLSLMGRGNGKTGFASWNNFFLLTAKHGIKNYDIDIYANNESQAKTS-F 141
Query: 126 AEVSKWLSLLPN---------KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+V K + P+ K + + + ++ +
Sbjct: 142 DDVFKVIKDHPDLDKKVFKATKEVIQNIATNSKLRYNTANARTKDGKRPGANRFDEIHEN 201
Query: 177 SEER----PDTFVGHHNTYGMAIINDEAS-------GTPDVINLGILGFL-TERNANRFW 224
+ + G Y + + + G L +++ F
Sbjct: 202 EDYSMINVATSGGGKIRDYREFYDTTNGHVRGGPLDDIIEESKMILSGELGIDKDGAEFS 261
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ RL + ++ + + GL +
Sbjct: 262 SLFPFICRLDNDNEVDDPDMWEKACPTINYNADLKRKMFQEYSQMQRNAGL-RLTFMTKR 320
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEH 344
+ + + + + +E P+ +I D A+ +V +L +
Sbjct: 321 MNRPMEDTRFAVASYDDVLHTKEKEF-PEKMDEVIGTVDFADRRDFASVGLLGK------ 373
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
+ K T + I + + + + + ++G +
Sbjct: 374 ---YDKDVYFTQHTFIHESALRLQNIKREVIDISIDQGKSQIVHGKNIEADYIVGWFLEM 430
Query: 405 DLEFCRNRRTE-LHVK--MADWLEFASL 429
++ + ++ + LE A
Sbjct: 431 SNKYYIKKMAMDMYRAKILKPALEEAGF 458
>gi|209545636|ref|YP_002277865.1| cysteine ABC transporter permease/ATP-binding protein CydC
[Gluconacetobacter diazotrophicus PAl 5]
gi|209533313|gb|ACI53250.1| ABC transporter, CydDC cysteine exporter (CydDC-E) family,
permease/ATP-binding protein CydC [Gluconacetobacter
diazotrophicus PAl 5]
Length = 568
Score = 40.3 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 56/195 (28%), Gaps = 19/195 (9%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ A + + P + AI GIGK+TL A L+ +++ ++
Sbjct: 352 FRWQANRGHAGRAAVFDGLTLDIPAGSRVAILGPSGIGKSTLAALLL--KVASPEAGRIL 409
Query: 112 CLANSETQLKTTLWAEVSKWLSLL----------------PNKHWFE-MQSLSLHPAPWY 154
L + + WLS P+ E +L
Sbjct: 410 LGGQDLATLDSVSVRQRIAWLSQATHLFADTIRANLLLGGPDATEAELWTALDRAQVGDV 469
Query: 155 SDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214
L L R + + I+++ A+G L
Sbjct: 470 VRALPEGLDSWLGEGGASLSGGQGRRIALARTLLSDAPILILDEPATGLDAETEREFLKT 529
Query: 215 LTERNANRFWIMTSN 229
L A+R I+ ++
Sbjct: 530 LYSVTADRTVILIAH 544
>gi|162147531|ref|YP_001601992.1| transport ATP-binding protein cydC [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786108|emb|CAP55690.1| putative transport ATP-binding protein cydC [Gluconacetobacter
diazotrophicus PAl 5]
Length = 546
Score = 40.3 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 32/195 (16%), Positives = 56/195 (28%), Gaps = 19/195 (9%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ A + + P + AI GIGK+TL A L+ +++ ++
Sbjct: 330 FRWQANRGHAGRAAVFDGLTLDIPAGSRVAILGPSGIGKSTLAALLL--KVASPEAGRIL 387
Query: 112 CLANSETQLKTTLWAEVSKWLSLL----------------PNKHWFE-MQSLSLHPAPWY 154
L + + WLS P+ E +L
Sbjct: 388 LGGQDLATLDSVSVRQRIAWLSQATHLFADTIRANLLLGGPDATEAELWTALDRAQVGDV 447
Query: 155 SDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214
L L R + + I+++ A+G L
Sbjct: 448 VRALPEGLDSWLGEGGASLSGGQGRRIALARTLLSDAPILILDEPATGLDAETEREFLKT 507
Query: 215 LTERNANRFWIMTSN 229
L A+R I+ ++
Sbjct: 508 LYSVTADRTVILIAH 522
>gi|71281314|ref|YP_270050.1| putative helicase [Colwellia psychrerythraea 34H]
gi|71147054|gb|AAZ27527.1| putative helicase [Colwellia psychrerythraea 34H]
Length = 1017
Score = 40.3 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 41/250 (16%), Positives = 66/250 (26%), Gaps = 45/250 (18%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSF-------------SNFVLHFFPWGEKGTPLEGF 48
S+E+P + FD W F F TP F
Sbjct: 210 SQEIPHIIKKSLSTFDTYWESPDFEYFDGEIESREKLSNALQEARGSF---NPSTPSFYF 266
Query: 49 S-APRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG 107
P S Q +E + V ++ + A G GKT ++A+ + P
Sbjct: 267 DIKPHSHQQTILEKLQ------VERDLHNRYRNLVVAATGTGKTIISAFDFSRFYNANPE 320
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ +A+ E LK L A + + W S + +
Sbjct: 321 AKFLFIAHREEILKQALGAYRGVLKNSTFGELWVGNNKPSKYQHLF-------------- 366
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
S + Y I+ DE + L + +T
Sbjct: 367 -----ASIQSVNAQIETLALSEDYFDYIVIDEVHHISASSYRAV---LKHFSPQILLGLT 418
Query: 228 SNPRRLSGKF 237
+ P R G
Sbjct: 419 ATPERHDGSD 428
>gi|150388253|ref|YP_001318302.1| phage uncharacterized protein [Alkaliphilus metalliredigens QYMF]
gi|150389725|ref|YP_001319774.1| phage uncharacterized protein [Alkaliphilus metalliredigens QYMF]
gi|150392050|ref|YP_001322099.1| phage uncharacterized protein [Alkaliphilus metalliredigens QYMF]
gi|149948115|gb|ABR46643.1| phage uncharacterized protein [Alkaliphilus metalliredigens QYMF]
gi|149949587|gb|ABR48115.1| phage uncharacterized protein [Alkaliphilus metalliredigens QYMF]
gi|149951912|gb|ABR50440.1| phage uncharacterized protein [Alkaliphilus metalliredigens QYMF]
Length = 485
Score = 40.3 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 54/413 (13%), Positives = 110/413 (26%), Gaps = 43/413 (10%)
Query: 46 EGFSAPRSWQ---LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM 102
E F R++Q + ++ + L + P I+ G GK+ W
Sbjct: 37 EFFRESRTFQDKVCKTIQAIYEKKLINPKTNKPYSILV-INLPPGHGKSYTAGMFSTWA- 94
Query: 103 STRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
+S ++ S Q + +A K + E ++ V
Sbjct: 95 -FGDSVSNQIISVSYNQTLSIRFA---KMVREHIQDQEIEGDDNYYVVNSFFPSVKIKDG 150
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND-------EASG--TPDVINLGILG 213
+S S G I D EA +
Sbjct: 151 DGAMNLWSLEGAYMSYLATSFDGSITGMRGNIGIIDDPIKNKSEAVNERVKEAHWDWYKN 210
Query: 214 FLTER--NANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG--- 268
R I+ + I N P + +
Sbjct: 211 TFLSRMVEGAIQIIIQTRWATDDLAGRVIANFPEKTYVLEMPVLNEKDEPLCDEILSYDA 270
Query: 269 -IIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
+ + G+D D+ + + + E + + +I D A+E
Sbjct: 271 IMDKKGGIDEDIFEANYLQRPIDKKGSLYK-----EFKTYDVVDDEAFEDIIAYIDTADE 325
Query: 328 GGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK-----YRPDAIIIDANNTGAR 382
G D + + G VI L +++ Y I ++NN G
Sbjct: 326 GRDY--LCMPIGGVIGRLGYVKDIYYTDEAMEVTEEEVARRLHIYGVKNAIFESNNGGRG 383
Query: 383 TCDYLEMLGYHVYRVLGQKRAVDLEFC---RNRRTELHVKMADWLEFASLINH 432
+ R + + ++++ +N++T + V ++ +E +
Sbjct: 384 FA----RKVEDILRKKYKNKKCNIKWFFQSKNKKTRILVNSSNVIEQVIMPED 432
>gi|325288720|ref|YP_004264901.1| phage uncharacterized protein [Syntrophobotulus glycolicus DSM
8271]
gi|325290721|ref|YP_004266902.1| phage uncharacterized protein [Syntrophobotulus glycolicus DSM
8271]
gi|325291058|ref|YP_004267239.1| phage uncharacterized protein [Syntrophobotulus glycolicus DSM
8271]
gi|325291230|ref|YP_004267411.1| phage uncharacterized protein [Syntrophobotulus glycolicus DSM
8271]
gi|324964121|gb|ADY54900.1| phage uncharacterized protein [Syntrophobotulus glycolicus DSM
8271]
gi|324966122|gb|ADY56901.1| phage uncharacterized protein [Syntrophobotulus glycolicus DSM
8271]
gi|324966459|gb|ADY57238.1| phage uncharacterized protein [Syntrophobotulus glycolicus DSM
8271]
gi|324966631|gb|ADY57410.1| phage uncharacterized protein [Syntrophobotulus glycolicus DSM
8271]
Length = 586
Score = 39.9 bits (91), Expect = 0.89, Method: Composition-based stats.
Identities = 38/331 (11%), Positives = 81/331 (24%), Gaps = 25/331 (7%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS-VICLANSETQLKTTL 124
++ E + AI A RG K+T + S +I L++S Q + L
Sbjct: 110 IRDAKEISRAEGCRRAIEAPRGHAKSTTFTFKDTVHASAYGYKHYIIILSDSSEQAEGFL 169
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+++ + F + A + R +
Sbjct: 170 TDIKTEYEENAALREDFGDMQGKVWKAGVILLSNGVKIEAIGSGKKIRGR---RHKQWRP 226
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT----------------- 227
N + +++ I+
Sbjct: 227 DLILCDDLENDENVNTPEQRKKLRNWFYKAVSKAGDTYTDIVYIGTLLHFDALLANVAKN 286
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ + + F K W ++ + D + + EV +
Sbjct: 287 PQYKTVKYRGVISFAKNEKLWSAWEAIYTDLNNDDRQEDAKAFFEANREEMLEGTEVLWE 346
Query: 288 F-PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCD---IAEEGGDNTVVVLRRGPVIE 343
I ++ E + N E DP P + + D R +
Sbjct: 347 AKLSYYDLMVIRVSEGESSFNSEIQNDPIDPESCAFNEEWFSYYKDDEVDFSDGRFLFVG 406
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ ++ + I GL + R + +
Sbjct: 407 ANDPSLGKNKKSDTSAIIGLAKDTRTGYMYV 437
>gi|237809847|ref|YP_002894287.1| type III restriction protein res subunit [Tolumonas auensis DSM
9187]
gi|237502108|gb|ACQ94701.1| type III restriction protein res subunit [Tolumonas auensis DSM
9187]
Length = 1046
Score = 39.9 bits (91), Expect = 0.89, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P Q E +E + V + ++ + A G GKT ++A+ + +P +
Sbjct: 320 PFPHQQEILEQLT------VERTLHQRYRNLVVAATGTGKTLISAFDFARFLKQKPDATF 373
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
+ +A+ E LK A + + W
Sbjct: 374 LFIAHREEILKQAQSAYRGVLRNSSFGEFWAGNT 407
>gi|46447193|ref|YP_008558.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400834|emb|CAF24283.1| putative ATP-dependent RNA helicase [Candidatus Protochlamydia
amoebophila UWE25]
Length = 515
Score = 39.9 bits (91), Expect = 0.89, Method: Composition-based stats.
Identities = 29/232 (12%), Positives = 55/232 (23%), Gaps = 20/232 (8%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGR--------GIGKTTLNAWLVLWLMSTRPGIS 109
++ + + + + AG G GKT L L+ PG
Sbjct: 22 ILQALQEAGFKIASPIQKQAIPV-VLAGHDVVAQAHTGTGKTAAFGLPALHLIHDNPGSQ 80
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
++ L + E+ + L + S P +
Sbjct: 81 LLVLTPTRELASQVS-DELFRLGRHLGIRTATICGGKSFRPQIEALQRGVQVIVATP--- 136
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
R D+ + DE I T A R ++ S
Sbjct: 137 ---GRLQDLLESDSLPDFRPAIVVLDEADE--MLDMGFLEAIQRIFTFLPAKRQTLLFSA 191
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
++ ++ L + + D +I D + R
Sbjct: 192 TM--PSAIQKLAHQILKKPIFISVTQKETTNKDIKQVYYVIREDERDDAILR 241
>gi|325478761|gb|EGC81872.1| putative phage terminase, large subunit [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 529
Score = 39.9 bits (91), Expect = 0.90, Method: Composition-based stats.
Identities = 33/297 (11%), Positives = 78/297 (26%), Gaps = 30/297 (10%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISVI 111
WQ E + + ++ + I + +GK+ L A + L L V
Sbjct: 47 WQEEIIRDLFGIVKDTGYR---QFNTAYIEIPKKMGKSELAAAVALLLTCGDGEERAEVY 103
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q T ++ + + + P ++ + ++ + L ++
Sbjct: 104 GCAADRQQA-TIVFDVAADMVRMSPALSKRVKILASQKRMIYKPTNSFYQVLSAEA---- 158
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
++ F H + + G+ D + +T + I
Sbjct: 159 YSKHGFNIHGV-VFDELHTQPNRKLFDVMTKGSGDARTQPLYFLITTAGTDTKSICYETH 217
Query: 231 RRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVEGIDPSF-HEGIIA------R 272
++ P DDW ++ + + + E + +
Sbjct: 218 QKAVDILEGRKTDPTFYPVIYGADREDDWTDEKVWHKANPSLGITVPIEKVRQACESAKQ 277
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + R Q+ +Q I G D++
Sbjct: 278 NPTEENAFRQLRLNQWVKQAIRWMPMEKWDLCNFAVNEEELKGRVCYGGLDLSSTTD 334
>gi|310286672|ref|YP_003937930.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium bifidum
S17]
gi|309250608|gb|ADO52356.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium bifidum
S17]
Length = 1061
Score = 39.9 bits (91), Expect = 0.90, Method: Composition-based stats.
Identities = 30/243 (12%), Positives = 61/243 (25%), Gaps = 39/243 (16%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFS-APRSWQLEFME 60
S+ + P TE + D F + P + LEG P + Q E +
Sbjct: 207 SQIADSKPLTE-EWIKQYEED--------FKKYAPPRRDILKSLEGREIQPNAMQKEALA 257
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ + + I + G GKT L+A + + ++ +A + L
Sbjct: 258 SLKKLREKGEH-------RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMIL 306
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K + + P S + +
Sbjct: 307 KAAMKSYQKVL--GCPQSELGLYTGTSKQQ----------------DRRYVFATVQTMRQ 348
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
P+ + ++ DE ++ + + T F
Sbjct: 349 PEALAQFASDEFDYVLVDEVHHAGAEGYQRVIDHFRDADFMLGMTATPERTDGINIFELF 408
Query: 241 FNK 243
+
Sbjct: 409 GHN 411
>gi|300933369|ref|ZP_07148625.1| Terminase [Corynebacterium resistens DSM 45100]
Length = 532
Score = 39.9 bits (91), Expect = 0.91, Method: Composition-based stats.
Identities = 41/299 (13%), Positives = 87/299 (29%), Gaps = 32/299 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPG---IS 109
WQ + + + + + + + GK+ L A + L L++ G
Sbjct: 48 EWQEQIVRDLFGTI---KPDGYRQFTTAYVEIPKKQGKSELAAAIAL-LLTCGDGEQAAE 103
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
V A Q + ++ + + P ++ LS Y + ++ Y
Sbjct: 104 VYGCAADRQQA-SIVFEVAADMIRQSPA-LSKRVKILSSQKRIIYKPTNSFYQVLSAEAY 161
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
S S F H A+ + G+ D + +T + I
Sbjct: 162 SKHGFNIS---GVVFDELHTQPNRALFDVMTKGSGDARTQPLYFLITTAGTDTHSICYEQ 218
Query: 230 PRRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVE------GIDPSFHE-GIIA 271
++ + P DDW + + +D
Sbjct: 219 HQKARDILAGKKHDPTFYPVIYGADVDDDWTSEDVWHKANPSLGVTVPVDKVRAACNSAR 278
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGG 329
+ + + R Q+ +Q + +P++I + +R + P G D+A
Sbjct: 279 QNPAEENTFRQLRLNQWVKQSVRW-MPMHIWNQNSDRVDLADLEGRPCYGGLDLASTTD 336
>gi|227821702|ref|YP_002825672.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
gi|227340701|gb|ACP24919.1| DNA packaging protein Gp2 [Sinorhizobium fredii NGR234]
Length = 416
Score = 39.9 bits (91), Expect = 0.91, Method: Composition-based stats.
Identities = 50/433 (11%), Positives = 101/433 (23%), Gaps = 60/433 (13%)
Query: 84 AGRGIGKTTLNAWLVL---------WLMSTRPGISVICLAN------SETQLKTTLWAEV 128
AG +GKT A W R ++ LA + ++ +
Sbjct: 2 AGNQLGKTLAGAAEAAMHLTGRYPDWWDGRRFDKPIVMLAGSESYELTRDGVQRLMVGPP 61
Query: 129 ---SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
W + K D + + +
Sbjct: 62 MNEEDWGTGCIPKAAIVGTPTRRSGVSGALDSVTVRHVSGGVSILLF------KAYEQGR 115
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
G + + + DV GI R + + + + +S +
Sbjct: 116 GKWQANTVDYVWFDEEPPEDVYFEGITRTNATRGS--IAVTFTPLKGMSTVVARYILEKS 173
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
D + + E P + II Y R + P P+ E
Sbjct: 174 PDREVITMTIDDAEHYTPEERQRIIDSYPAHEREARTK---GVPSLGSGRIFPVA-EESI 229
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRG----PVIEHLFDWSKTDLRTTNNKIS 361
+ I G D + + ++ + +
Sbjct: 230 TIAPFEIPKHWVQIGGLDFGWDHPFGAAGCAWDRDADVFYVTKVYREREATPIIHAAALK 289
Query: 362 GLVE----KYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL-------GQKRAVDLEFCR 410
+ D + D +G + G ++ A + +
Sbjct: 290 PWGAWLPWSWPHDGLQHDK-GSGEQLATQYRAQGLNMLPERATFEDGTNGVEAGLSDMLQ 348
Query: 411 NRRTELH---VKMADWLEFASLIN--HSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKS 465
+T +W E L + +++ V + A+ KR K
Sbjct: 349 RMQTGRWKVFSTCGEWFEEFRLYHRKDGKVVKE-----RDDVISASRYALMMKRFARVK- 402
Query: 466 TDYSDGLMYTFAE 478
+D + F+E
Sbjct: 403 ---ADAAAWKFSE 412
>gi|209515891|ref|ZP_03264753.1| conserved hypothetical protein [Burkholderia sp. H160]
gi|209503739|gb|EEA03733.1| conserved hypothetical protein [Burkholderia sp. H160]
Length = 698
Score = 39.9 bits (91), Expect = 0.91, Method: Composition-based stats.
Identities = 43/345 (12%), Positives = 82/345 (23%), Gaps = 20/345 (5%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR--PGISVICLANSETQ 119
+ H + G G GKT L WL R V+ +
Sbjct: 252 IFLHPSQRKLAEGDRSGPVRVLGGAGTGKTVLAMHRAKWLAENRTSDAQKVLFTTFTRNL 311
Query: 120 LKTTLWAEVSKW----LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ L L ++ + +++ +
Sbjct: 312 ATDIEQNLRTLCSAATLEKLEVRNLDAWVHGFMRSNKLEHRIVYERKHDGPQQAWEAALA 371
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLG---ILGFLTERNANRFWIMTSNPRR 232
+ D + +I + T D G L R +
Sbjct: 372 SKDSSLDLPDNFYEQELEKVILAQGITTLDEYRKARRTGRGVLLSRAKRD--AVWPVFDE 429
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLD-SDVTRVEVCGQFPQQ 291
G+ K +DD R + + I+ D + P
Sbjct: 430 YRGQLASRKLKEVDDAYREVASMLDADKSLAPTYSAIVVDETQDFGPQALRLLRAMIPAG 489
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIM-GCDIAEEGGDNTVVVLRRGPVIEH--LFDW 348
D F + + NR + + G T +RR V +
Sbjct: 490 TNDLFFVGDGHQRIYNRHRAAMSKCGIDIRGRSRKLYINYRTTDEIRRKAVALLEGVEVD 549
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNT---GARTCDYLEML 390
D + +++ L + P + + A G + ++L
Sbjct: 550 DLDDGQDESSRYRSLT--HGPAPVEVHAAGMEEAGEKVREFLHQW 592
>gi|57640405|ref|YP_182883.1| reverse gyrase [Thermococcus kodakarensis KOD1]
gi|73914060|sp|Q6F598|RGYR_PYRKO RecName: Full=Reverse gyrase; Includes: RecName: Full=Helicase;
Includes: RecName: Full=Topoisomerase; Contains:
RecName: Full=Pko r-Gyr intein
gi|49532704|dbj|BAD26706.1| reverse gyrase [Thermococcus kodakaraensis]
gi|57158729|dbj|BAD84659.1| Reverse gyrase [Thermococcus kodakarensis KOD1]
Length = 1711
Score = 39.9 bits (91), Expect = 0.92, Method: Composition-based stats.
Identities = 38/405 (9%), Positives = 100/405 (24%), Gaps = 67/405 (16%)
Query: 11 TEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSV 70
T ++ + + F K T +SA R+W ++
Sbjct: 56 TLKEWEKIYQLENQTREIEEFFK-------KATGFTFWSAQRTWVKRLLK---------- 98
Query: 71 NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK 130
+I A G+GK+T A++ +W G + + + ++
Sbjct: 99 ------GRSFSIIAPTGMGKSTFGAFMAVWHAL--KGKKSYIVVPTTPLVIQ-TVRKIEG 149
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
+ +L + + +
Sbjct: 150 IMENANADVRLAYYHGNLRKKEKEEMLERIKNEDY--DILVTSAQWLARNYE--EVLKGR 205
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
+ I D+ + W+
Sbjct: 206 HFDFIFVDDVDAFLKASKNIDRSLYLLGFTDEII--------------------QKAWEI 245
Query: 251 FQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREP 310
++ + ++ + + GL+ ++ +++ + ++ I + II A
Sbjct: 246 IRLKKQMSRYLNGNSEDRNEKLNGLNREIEKLQREIEKFKRKNK--IGIMIIASATGS-- 301
Query: 311 CPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPD 370
+ + ++ + LR + D + + L+ +
Sbjct: 302 --ARGDRIKLYRELLGFEVGSGRSALRN------VVDSYLKPTKDIKEHVEELLTRLGKG 353
Query: 371 AIIIDANNTGARTCDY----LEMLGYHVYRVLGQKRAVDLEFCRN 411
+I + G + L G+ + V + + E N
Sbjct: 354 GLIFVPVDQGLGYAEELANYLSEKGFKIELVSSKNKKAL-EKFEN 397
>gi|315654947|ref|ZP_07907852.1| prophage LambdaSa04 [Mobiluncus curtisii ATCC 51333]
gi|315490908|gb|EFU80528.1| prophage LambdaSa04 [Mobiluncus curtisii ATCC 51333]
Length = 534
Score = 39.9 bits (91), Expect = 0.92, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 77/297 (25%), Gaps = 28/297 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + + + GK+ L A + L L V
Sbjct: 50 DWQEQIIRDLFG---VVKPDGFRQFTTAYVEIPKKQGKSELAAAVALLLCCGDGEERAEV 106
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q + ++ + + + P ++ L YS + ++ YS
Sbjct: 107 YGCAADRQQA-SIVFEVAADMVRMCPP-LAKRVKILRSQKRIIYSPTNSFYQVLSAEAYS 164
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
S F H A+ + G+ D + +T + I
Sbjct: 165 KHGFNIS---GVVFDELHTQPNRALFDVMTKGSGDARTQPLYFLITTAGTDTHSICYEQH 221
Query: 231 RRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVEGIDPSFHEGIIAR------- 272
++ + P DDW + + +D + +
Sbjct: 222 QKAQDILAGKKHDPTFYPVIYGAAQDDDWTNEAVWHKANPSLDVTVPIQKVRDACNSARQ 281
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + R Q+ +Q + + G D+A
Sbjct: 282 NPAEENTFRQLRLNQWVKQSVRWMPMNTWNKNDGPVHLNELEGRVCYGGLDLASTTD 338
>gi|220930202|ref|YP_002507111.1| terminase [Clostridium cellulolyticum H10]
gi|220000530|gb|ACL77131.1| Terminase [Clostridium cellulolyticum H10]
Length = 534
Score = 39.9 bits (91), Expect = 0.93, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 80/298 (26%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + + + +GK+ L A + L L V
Sbjct: 50 DWQEQIIRDLFGIL---KPDGYRQFNTAYVEIPKKMGKSELAAAIALLLTCGDGEERAEV 106
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHW-FEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q + ++ + + + P + ++ + + ++ + L ++
Sbjct: 107 YGCAADRQQA-SIVFEVAADMVRMCPALNKRVKLLASTKRLVYLPTNSFYQVLSAEA--- 162
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
++ F H + + G+ D + +T + I
Sbjct: 163 -YSKHGFNIHGV-VFDELHTQPNRKLFDVMTKGSGDARTQPLYFLITTAGTDTQSICYET 220
Query: 230 PRRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVE------GIDPSFHE-GIIA 271
++ P DDW ++ + GID
Sbjct: 221 HQKAVDIIEGRKYDPTFYPVIYGAKEEDDWTDPKVWKKANPSLGITVGIDKVRAACESAK 280
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + + R Q+ +Q + A P G D++
Sbjct: 281 QNPAEENSFRQLRLNQWVKQSVRWMPMAKWDACAFPVIPESLEGRVCYGGLDLSSTTD 338
>gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
Length = 416
Score = 39.9 bits (91), Expect = 0.94, Method: Composition-based stats.
Identities = 46/300 (15%), Positives = 79/300 (26%), Gaps = 43/300 (14%)
Query: 33 LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT 92
L P + GFS P Q E + SA G GKT
Sbjct: 8 LELDPVLLEAIEEMGFSRPTQVQAEAIPQALD------------GRDVLASAPTGTGKTA 55
Query: 93 LNAWLVLWLMSTRP-----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
A L + P ++ L + AE ++ L+ + F +
Sbjct: 56 AFAIPALQYLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGV 113
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ + +T R + F +I DEA D+
Sbjct: 114 QYQEHADILATTQDIV-----VATPGRLLEYIDAERFD---CRAIEWLILDEADRMLDMG 165
Query: 208 NLGILGFLTERNANRF----WIMTSNPRRLSGKFYEIFNKP---------LDDWKRFQID 254
+ L+ R + T R + G ++ P + K Q
Sbjct: 166 FGPTVDRLSAECRWRKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWY 225
Query: 255 TRTVEGIDPSF-HEGIIARYGLDSDVT--RVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
R + + I+ S V E + + IP I+ + ++
Sbjct: 226 HRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRR 285
>gi|311063565|ref|YP_003970290.1| DNA/RNA helicase [Bifidobacterium bifidum PRL2010]
gi|310865884|gb|ADP35253.1| DNA/RNA helicase (DEAD/DEAH box family) [Bifidobacterium bifidum
PRL2010]
Length = 1061
Score = 39.9 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 30/243 (12%), Positives = 61/243 (25%), Gaps = 39/243 (16%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFS-APRSWQLEFME 60
S+ + P TE + D F + P + LEG P + Q E +
Sbjct: 207 SQIADSKPLTE-EWIKQYEED--------FKKYAPPRRDILKSLEGREIQPNAMQKEALA 257
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ + + I + G GKT L+A + + ++ +A + L
Sbjct: 258 SLKKLREKGEH-------RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMIL 306
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K + + P S + +
Sbjct: 307 KAAMKSYQKVL--GCPQSELGLYTGTSKQQ----------------DRRYVFATVQTMRQ 348
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
P+ + ++ DE ++ + + T F
Sbjct: 349 PEALAQFASDEFDYVLVDEVHHAGAEGYQRVIDHFRDADFMLGMTATPERTDGINIFELF 408
Query: 241 FNK 243
+
Sbjct: 409 GHN 411
>gi|290975236|ref|XP_002670349.1| dead box RNA helicase [Naegleria gruberi]
gi|284083907|gb|EFC37605.1| dead box RNA helicase [Naegleria gruberi]
Length = 2295
Score = 39.9 bits (91), Expect = 0.96, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
I A G GKT L A L ++ + T+P VI +A + ++ L K++ L K
Sbjct: 1452 ILIGAPTGSGKT-LAAELCIFRLFNTKPNQKVIYIAPLKALVRERLVEWEKKFVQKLGKK 1510
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGH 187
++ + + + + R + VG
Sbjct: 1511 ---MVELTGDFTPDVKLLKEADIVITTPEKWDGISRNWQNRSYVRDVGL 1556
>gi|327289195|ref|XP_003229310.1| PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Anolis carolinensis]
Length = 1724
Score = 39.9 bits (91), Expect = 0.97, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 41/156 (26%), Gaps = 15/156 (9%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
F + N+V N + VF + A G GK+ + +L ++ + + E
Sbjct: 1327 FFNPIQTQVFNTVYNSDENVF---VGAPTGSGKSICAEFAILRMLLQNSEGRCVYITPME 1383
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ W + + + V + + + + R +
Sbjct: 1384 ALAEQIF----LDWYEKFQERLLKKVVLLTGETSTDLKLLVKGNIIISTPEKWDILSRRW 1439
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
+ + I DE +
Sbjct: 1440 KQRKNV-------QNVNLFIVDEVHLIGGENGPVLE 1468
>gi|297793665|ref|XP_002864717.1| hypothetical protein ARALYDRAFT_919354 [Arabidopsis lyrata subsp.
lyrata]
gi|297310552|gb|EFH40976.1| hypothetical protein ARALYDRAFT_919354 [Arabidopsis lyrata subsp.
lyrata]
Length = 2112
Score = 39.9 bits (91), Expect = 0.97, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 12/134 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT +L L ST+P + V+ +A LK + ++ W L
Sbjct: 1330 VLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAP----LKAIVRERMNDWKKHLVAPL 1385
Query: 140 WFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
EM + + + + + + + R + VG +I D
Sbjct: 1386 GKEMVEMTGDYTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVG-------LVILD 1438
Query: 199 EASGTPDVINLGIL 212
E +
Sbjct: 1439 EIHLLGADRGPILE 1452
>gi|22091415|gb|AAL69489.2| putative RNA helicase [Arabidopsis thaliana]
Length = 805
Score = 39.9 bits (91), Expect = 0.97, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 12/134 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT +L L ST+P + V+ +A LK + ++ W L
Sbjct: 22 VLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAP----LKAIVRERMNDWKKHLVAPL 77
Query: 140 WFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
EM + + + + + + + R + VG +I D
Sbjct: 78 GKEMVEMTGDYTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVG-------LVILD 130
Query: 199 EASGTPDVINLGIL 212
E +
Sbjct: 131 EIHLLGADRGPILE 144
>gi|30697481|ref|NP_200922.2| DEAD box RNA helicase, putative [Arabidopsis thaliana]
gi|332010042|gb|AED97425.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]
Length = 2146
Score = 39.9 bits (91), Expect = 0.97, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 12/134 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT +L L ST+P + V+ +A LK + ++ W L
Sbjct: 1363 VLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAP----LKAIVRERMNDWKKHLVAPL 1418
Query: 140 WFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
EM + + + + + + + R + VG +I D
Sbjct: 1419 GKEMVEMTGDYTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVG-------LVILD 1471
Query: 199 EASGTPDVINLGIL 212
E +
Sbjct: 1472 EIHLLGADRGPILE 1485
>gi|9759460|dbj|BAB10376.1| RNA helicase [Arabidopsis thaliana]
gi|332010043|gb|AED97426.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]
Length = 2157
Score = 39.9 bits (91), Expect = 0.97, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 12/134 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT +L L ST+P + V+ +A LK + ++ W L
Sbjct: 1374 VLVGAPTGSGKTISAELAMLRLFSTQPDMKVVYIAP----LKAIVRERMNDWKKHLVAPL 1429
Query: 140 WFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
EM + + + + + + + R + VG +I D
Sbjct: 1430 GKEMVEMTGDYTPDLVALLSADIIISTPEKWDGISRNWHTRSYVKKVG-------LVILD 1482
Query: 199 EASGTPDVINLGIL 212
E +
Sbjct: 1483 EIHLLGADRGPILE 1496
>gi|298694392|gb|ADI97614.1| Phage terminase large subunit [Staphylococcus aureus subsp. aureus
ED133]
Length = 553
Score = 39.9 bits (91), Expect = 0.98, Method: Composition-based stats.
Identities = 42/306 (13%), Positives = 81/306 (26%), Gaps = 29/306 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS--- 109
+Q + + L N + A+ GRG GK L + + +L + G+
Sbjct: 65 PFQRFIIANI---FLIDKNTDEAFFTEFAVFMGRGGGKNGLISAISDFLSTPLHGVKEYH 121
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHW-----------FEMQSLSLHPAPWYSDVL 158
+ +ANSE Q KT+ + + NK E+ + + Y+
Sbjct: 122 ISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKTEIINRATKSVIRYNTSN 181
Query: 159 HCSLGIDSKHYSTMCRTYSEERPDTFVGHHN------TYGMAIINDEA---SGTPDVINL 209
+ + + P+ I+ + G D +
Sbjct: 182 TKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMKH 241
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI 269
I L+ + N + + + + + + + + E
Sbjct: 242 KIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEY 301
Query: 270 IARY--GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEE 327
+ + P I A NRE I G D A
Sbjct: 302 NDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEI-LATNREIPNLDNQMCIGGLDFANI 360
Query: 328 GGDNTV 333
+V
Sbjct: 361 RDFASV 366
>gi|225158171|ref|ZP_03725066.1| hypothetical protein ObacDRAFT_7916 [Opitutaceae bacterium TAV2]
gi|224802675|gb|EEG20929.1| hypothetical protein ObacDRAFT_7916 [Opitutaceae bacterium TAV2]
Length = 304
Score = 39.9 bits (91), Expect = 0.98, Method: Composition-based stats.
Identities = 24/190 (12%), Positives = 49/190 (25%), Gaps = 11/190 (5%)
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
+ + A R GK+ L + L M PG+ ++ + + E
Sbjct: 17 RAGFRHPLRRLAYVWRRQGGKSYLLSNEALDWMMETPGVLTSIISAAIALGTEIIVKEAQ 76
Query: 130 KWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN 189
W L + + L + +H + + + +
Sbjct: 77 SWREHL-ARIKAVAAAADLKLETNADTIDFDGFCDLFEHSKLEAKLWHDRTTCSRTRVIA 135
Query: 190 TYGMA-------IINDEASGTPD--VINLGILGFL-TERNANRFWIMTSNPRRLSGKFYE 239
II DE P+ + I F+ + T P +
Sbjct: 136 PNPNTAVGWTGHIIGDEFGRWPNCQDVLEAIEPFMESNPQFRLRLATTPPPDDAHYSYEM 195
Query: 240 IFNKPLDDWK 249
+ K ++
Sbjct: 196 LLPKEGTEFT 205
>gi|228966921|ref|ZP_04127961.1| phage terminase, large subunit [Bacillus thuringiensis serovar
sotto str. T04001]
gi|229061552|ref|ZP_04198896.1| phage terminase, large subunit [Bacillus cereus AH603]
gi|228717786|gb|EEL69436.1| phage terminase, large subunit [Bacillus cereus AH603]
gi|228792774|gb|EEM40336.1| phage terminase, large subunit [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 539
Score = 39.9 bits (91), Expect = 0.99, Method: Composition-based stats.
Identities = 33/346 (9%), Positives = 78/346 (22%), Gaps = 31/346 (8%)
Query: 7 TNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHC 66
+ + ++ L + + F WQ ++
Sbjct: 8 KSCKEQKLLMKYVRKILSRDDIYFNAKAAEDSINVPAKYFPFEL-FLWQKFLNALMYGVR 66
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---VICLANSETQLKTT 123
+ + I GRG GKT A+ ++M+ GI+ + +A SE Q K
Sbjct: 67 FKK--DDRIVFDEVLILMGRGGGKTGYMAYDSFYMMTGHHGINNYDIDVVATSEDQAKR- 123
Query: 124 LWAEVSKWLS-----------LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+ +V ++ + + + S+
Sbjct: 124 TFTDVYNVINTPSFKEKFKKIFKWTLEEIQHKKTNSVMNYNTSNSRTKDGKRTGCVIFDE 183
Query: 173 CRTYSEER----PDTFVGHHNTYGMAIINDEASGTP---DVINLGILGFLTERNANRFWI 225
Y + G + + D + L+ + ++
Sbjct: 184 AHEYENYDNINVYTSGQGKVRGSRIIYTTTDGHVRGGPLDDLKETAKLILSGEIEDIHFL 243
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
+ + + ++ ++ + L + +
Sbjct: 244 PFICKLDSEDEVDD--PANWEKANPSLPYNDELKIKMKREYQKMQRNSKLRVEFMTKRMN 301
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYA-PLIMGCDIAEEGGD 330
E + PD I D A+
Sbjct: 302 IPISNILETVC---TWDELERTNQSIPDLSGLECIGAVDFAQVRDF 344
>gi|45190389|ref|NP_984643.1| AEL218Wp [Ashbya gossypii ATCC 10895]
gi|44983285|gb|AAS52467.1| AEL218Wp [Ashbya gossypii ATCC 10895]
Length = 1471
Score = 39.9 bits (91), Expect = 0.99, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 2/118 (1%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G GKTTL A ++ + R G +V+ + + + + L + L + + +
Sbjct: 1085 GTGKTTLIAEII--RILARNGKNVLLTSYTHSAVDNILLKLLDSELQIARLGYKHRVHPG 1142
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
H DV + S + T D+ + +I DEAS
Sbjct: 1143 VRHLVQSLEDVQTHEELVSSVDEFQVIATTCLGVNDSLLALRTKNFDYVILDEASQVS 1200
>gi|24371966|ref|NP_716008.1| helicase [Shewanella oneidensis MR-1]
gi|24345815|gb|AAN53453.1|AE015485_2 helicase [Shewanella oneidensis MR-1]
Length = 982
Score = 39.9 bits (91), Expect = 0.99, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 16/134 (11%)
Query: 17 DLMWSDEIKLSFSNFV----------LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHC 66
+ W FS + + P + Q E +E +
Sbjct: 203 ETYWESNEFELFSGDASSKEKLNNALKEAKGSSTEPSSFHFDIKPFAHQREILEQLA--- 259
Query: 67 LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA 126
V FK I A G GKT ++A+ P + + +A+ + L+ L A
Sbjct: 260 ---VERSVHGRFKNLIVAATGTGKTIISAFDFARFYKQHPEANFLFVAHRQEILQQALGA 316
Query: 127 EVSKWLSLLPNKHW 140
+ + W
Sbjct: 317 YRGVLKNNQFGELW 330
>gi|323693296|ref|ZP_08107514.1| phage Terminase [Clostridium symbiosum WAL-14673]
gi|323502779|gb|EGB18623.1| phage Terminase [Clostridium symbiosum WAL-14673]
Length = 533
Score = 39.9 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 53/402 (13%), Positives = 101/402 (25%), Gaps = 67/402 (16%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + + + +GK+ L A + L L V
Sbjct: 50 DWQEQIIRDIFGTLKPNGYR---QFNTAYVEIPKKMGKSELAAAVALLLTCGDGEERAEV 106
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q T ++ + + + P + ++ L+ Y + ++ YS
Sbjct: 107 YGCAADRQQA-TIVFDVAADMVRMCPALNR-RVKILASQKRIVYQPTNSFYQVLSAEAYS 164
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
F H + + G+ D + +T + I
Sbjct: 165 KHGFNI---HGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTNSICYETH 221
Query: 231 RRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVE------GIDPSFH--EGIIA 271
++ P DDW ++ + GID E
Sbjct: 222 QKAKDILEGRKIDPTFYPVIYGANETDDWTDPEVWKKANPSLGITVGIDKVEAACESAKQ 281
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG-- 329
G + R Q+ +Q + + P G D++
Sbjct: 282 NPGE-ENSFRQLRLNQWVKQAVRWMPMEKWDACSFAVNPDELEGRVCYGGLDLSSTTDIT 340
Query: 330 -------------------------DNTVVVLRRGPVIEHLFDWSK---------TDLRT 355
D + +RR V +++
Sbjct: 341 AFVLVFPPQDEDDKYAILPYFWVPEDTLELRVRRDHVPYDVWERQGFLQTTEGNVVHYGY 400
Query: 356 TNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I L EKY I D + LE +G+ V
Sbjct: 401 IEKFIERLGEKYNIREIAFDRWGA-VQMVQNLEGMGFTVVPF 441
>gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
Length = 416
Score = 39.9 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 46/300 (15%), Positives = 79/300 (26%), Gaps = 43/300 (14%)
Query: 33 LHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTT 92
L P + GFS P Q E + SA G GKT
Sbjct: 8 LELDPVLLEAIEEMGFSRPTQVQAEAIPQALD------------GRDVLASAPTGTGKTA 55
Query: 93 LNAWLVLWLMSTRP-----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
A L + P ++ L + AE ++ L+ + F +
Sbjct: 56 AFAIPALQYLLDFPRRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGV 113
Query: 148 LHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+ + +T R + F +I DEA D+
Sbjct: 114 QYQEHADILATTQDIV-----VATPGRLLEYIDAERFD---CRAIEWLILDEADRMLDMG 165
Query: 208 NLGILGFLTERNANRF----WIMTSNPRRLSGKFYEIFNKP---------LDDWKRFQID 254
+ L+ R + T R + G ++ P + K Q
Sbjct: 166 FGPTVDRLSAECRWRKQTLLFSATLEGRGVEGFTADLLKNPAHIDAEPPRRERKKISQWY 225
Query: 255 TRTVEGIDPSF-HEGIIARYGLDSDVT--RVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
R + + I+ S V E + + IP I+ + ++
Sbjct: 226 HRADDMPHKVELLKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRR 285
>gi|91215221|ref|ZP_01252193.1| arginine/ornithine transport system ATPase [Psychroflexus torquis
ATCC 700755]
gi|91186826|gb|EAS73197.1| arginine/ornithine transport system ATPase [Psychroflexus torquis
ATCC 700755]
Length = 359
Score = 39.9 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 31/244 (12%), Positives = 75/244 (30%), Gaps = 9/244 (3%)
Query: 73 PNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA--NSETQLKTTLWAEVSK 130
+ + I+ G+GK+T L L T G V LA S + + ++ + ++
Sbjct: 82 HANKSLRIGITGVPGVGKSTFIEQLGLR--LTHEGHKVAVLAVDPSSSVSRGSILGDKTR 139
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
L+ + F + S + S+ + + + + H+
Sbjct: 140 MEKLVQEPNAFIRPTASSESLGGVARKTRESILLCEAAGFDILLVETVGVGQSETTVHSM 199
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNA----NRFWIMTSNPRRLSGKFYEIFNKPLD 246
+ + +G D + G + +A +R +F +
Sbjct: 200 -TDFFLLLKLAGAGDELQGIKRGIIEMADAIIINKSDGENIKPAKRAKVEFTNALHMYPA 258
Query: 247 DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
+ + ++ E + + + + + + + F IE++L
Sbjct: 259 KQNGWSPKVKLASALNNVGIEKVWTMISKYATIVKSNGFFENKRAYQNQFWLTQTIEDSL 318
Query: 307 NREP 310
RE
Sbjct: 319 KREF 322
>gi|195109152|ref|XP_001999154.1| GI23225 [Drosophila mojavensis]
gi|193915748|gb|EDW14615.1| GI23225 [Drosophila mojavensis]
Length = 2178
Score = 39.9 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 42/142 (29%), Gaps = 13/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ +P V+ +A + +K ++ W
Sbjct: 1351 VLLGAPTGSGKTIVAEIAIFRALNLQPKSKVVYIAPLKALVKER----IADWQQRFERSP 1406
Query: 140 WFE--MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
++ + + + + + R++ + I+
Sbjct: 1407 LGLKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRSWQTREYV-------QHVSLIVI 1459
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + I ++ N
Sbjct: 1460 DEIHLLGEDRGPVIEVIVSRTN 1481
>gi|258507444|ref|YP_003170195.1| UvrD/REP helicase [Lactobacillus rhamnosus GG]
gi|257147371|emb|CAR86344.1| UvrD/REP helicase [Lactobacillus rhamnosus GG]
gi|259648798|dbj|BAI40960.1| hypothetical protein [Lactobacillus rhamnosus GG]
Length = 595
Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR--PGISVIC 112
Q+E + + AH + + + AG G GKTT+ A VL L++TR + C
Sbjct: 5 QIESILLHGAHFTAEQREVIQAIGRIDVVAGPGSGKTTVLAAKVLRLLTTRNYEDKGICC 64
Query: 113 LANSETQLKTTL 124
+ ++ +K L
Sbjct: 65 ITHTNVAVKEIL 76
>gi|3647292|emb|CAA11695.1| gp5-like [Lactococcus lactis subsp. cremoris]
Length = 521
Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 46/320 (14%), Positives = 93/320 (29%), Gaps = 47/320 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + ++ + IS GRG GKT + A + + S +
Sbjct: 7 MEWQKFMLSLLIGWRNKEGGK---RFSRAIISVGRGQGKTYMLAISMAY--SFFVESRGL 61
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+N + + + + K L + +++P +D SL D
Sbjct: 62 --SNQDFLVSSINAKQTGKLYGYLKS---MINVLRTINPWKNIADKTDLSLQADKIIMRN 116
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTP--DVINLGILGFLTERNANRFWIMTSN 229
+ + + I DE + I+ + G + N I T+
Sbjct: 117 HNNVIRPISHEAGQYD-SYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQISTAY 175
Query: 230 PR-------RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG-------- 274
P + L D + + + +D ++ +
Sbjct: 176 PDPTVPFHEDEKMLQQAMEQDFLRDADTYLCLIWSNDSLDETYKPDTWVKSNPLLDLASE 235
Query: 275 -----------LDSDV-------TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
D+DV + + + DIDS++ L +E+A+ E
Sbjct: 236 HDNLMQGLLDKRDNDVLTGAVHDFQCKNLNMWLSSDIDSYLNLADVEKAIVPEFNIY-GQ 294
Query: 317 PLIMGCDIAEEGGDNTVVVL 336
+G D + + V +
Sbjct: 295 RCYVGVDYSMSSDNTAVAFV 314
>gi|56695944|ref|YP_166295.1| hypothetical protein SPO1044 [Ruegeria pomeroyi DSS-3]
gi|56677681|gb|AAV94347.1| conserved domain protein [Ruegeria pomeroyi DSS-3]
Length = 344
Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 12/148 (8%)
Query: 338 RGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYH---V 394
R + + ++ + + ++ IDA+ GA L+ G V
Sbjct: 180 RKCTVVFQETIQLYSYTDLADFLAKRLNQIPHWSLAIDASGLGAPFSSTLDNAGIEHHAV 239
Query: 395 YRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS------LINHSGLIQNLKSLKSFIVP 448
G + + + +T L MA LE + L L+ + S +
Sbjct: 240 VMTAGANMSRSGKDVKIAKTMLLENMAVGLETGALTVAHDLEGKQDLLNEIASFEL-AST 298
Query: 449 NTGELAIESKRVKGAKSTDYSDGLMYTF 476
++G L ++ D + +
Sbjct: 299 SSGNLVLQGGGK--GHHADRAIATALAY 324
>gi|297529729|ref|YP_003671004.1| type III restriction protein res subunit [Geobacillus sp. C56-T3]
gi|297252981|gb|ADI26427.1| type III restriction protein res subunit [Geobacillus sp. C56-T3]
Length = 818
Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 47/338 (13%), Positives = 95/338 (28%), Gaps = 51/338 (15%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
PR Q+E +E ++A + + G+GKT L A+ R V
Sbjct: 224 PRFAQVEALERLEAAYEEGYDKAM-------VVMATGLGKTYLAAFFA------RRFSRV 270
Query: 111 ICLANSE---TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ +A+ E Q K + + + L + + + + + + + +
Sbjct: 271 LFIAHREEILRQAKQSFERVIPDRTAGLYDGNQKDGNADMVFASIFTLSMKKHLH----- 325
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
I+ DE L +T
Sbjct: 326 ------------------SFRPDAFDLIVVDEFHH---AAARSYERVLCYFQPKFLLGIT 364
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
+ P R K ++ I+ + P + G+ D+D ++++ G
Sbjct: 365 ATPDRSDNKDVYALCDGNVAYRIDFIEAVQRGWLAPFHYYGVY----DDTDYSQIKWLGN 420
Query: 288 FPQQDI--DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHL 345
++ + + E+ L L+ I + G + R G L
Sbjct: 421 RYDEEELLQVQLREEMAEKILRAWKRYKKTRTLVFCSSI-RQAGFLSEYFQRHGCRTVSL 479
Query: 346 FDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGART 383
K + I+ L + +D N G
Sbjct: 480 HS--KQTAISRKQAIAMLERRELDAIFTVDLFNEGVDI 515
>gi|220905493|ref|YP_002480805.1| hypothetical protein Ddes_2231 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869792|gb|ACL50127.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 702
Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 25/251 (9%), Positives = 70/251 (27%), Gaps = 37/251 (14%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + G GKT + A +L + P +++
Sbjct: 187 DQWQKKAAIEIPEGSQRIRGLA-------------GSGKTVVLALKAAYLHTQHPEWNIV 233
Query: 112 CLANS---ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
++ Q+ + + P+ ++ W S ++
Sbjct: 234 VTYHTRSLYQQITDLIERFTFEHSGDKPDWGKLKV------MHAWGSASEPGVYSEAAES 287
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ ++ + ++ I +E + D + A I
Sbjct: 288 LGVIPINFALAKQKYGT----KDALSGICEELLISMDETYKADYDAILIDEAQDLPIS-- 341
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG-LDSDVTRVEVCGQ 287
F+ + + + KR ++ ++ + + +G ++ + ++ V
Sbjct: 342 --------FFRMVYLMVKEPKRIFWAYDELQNLNNNLMPTVDELFGTRENGIAKITVKNV 393
Query: 288 FPQQDIDSFIP 298
+ D +P
Sbjct: 394 ENEPARDIILP 404
>gi|254518470|ref|ZP_05130526.1| phage terminase [Clostridium sp. 7_2_43FAA]
gi|226912219|gb|EEH97420.1| phage terminase [Clostridium sp. 7_2_43FAA]
Length = 579
Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 42/307 (13%), Positives = 82/307 (26%), Gaps = 30/307 (9%)
Query: 55 QLEFMEVVDAH--CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL-WLMSTRPGISVI 111
Q F+E + A V + GR GKT L + L G ++
Sbjct: 87 QKAFIEAIFAIKMYDEEVGRYVRKYQDILFLVGRKNGKTPLIGAICLSEWFCGEMGKKIL 146
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKH----------WFEMQSLSLHPAPWYSDVLHCS 161
C +N Q ++ ++ +F +
Sbjct: 147 CASNDFEQA-DLMFQAINSMREESKTLEKVTRKNLKGIYFGNPRTKKKKGKFSYQNKGSI 205
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL-------GF 214
+ +K + R D + + I S + + + G+
Sbjct: 206 RKLSAKSGAKEGRNIGVGAVDEVFEMEDDSLVMPIRQALSTQDEPLYFELTTEGFTQDGY 265
Query: 215 LTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD-WKRFQIDTRTVEGIDP----SFHEGI 269
L +R ++ + + ++ W+ ++ GI SF +
Sbjct: 266 LDKRLIEARKVLNGEKQNERWLIWLYTQDSEEEVWEDETTWAKSNPGIGKIKKWSFLRRM 325
Query: 270 IARYGLDSDVTRVEVC---GQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAE 326
I DS T+ V Q + +++ IE L I D++E
Sbjct: 326 IEE-ARDSSSTKAFVLAKDFNVKQNNAQAWLSNKDIENTLEANIEDFKNKIAIGAADLSE 384
Query: 327 EGGDNTV 333
Sbjct: 385 TNDLTNA 391
>gi|295400221|ref|ZP_06810201.1| NERD domain protein [Geobacillus thermoglucosidasius C56-YS93]
gi|312110527|ref|YP_003988843.1| UvrD/REP helicase [Geobacillus sp. Y4.1MC1]
gi|294978000|gb|EFG53598.1| NERD domain protein [Geobacillus thermoglucosidasius C56-YS93]
gi|311215628|gb|ADP74232.1| UvrD/REP helicase [Geobacillus sp. Y4.1MC1]
Length = 639
Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 70/265 (26%), Gaps = 24/265 (9%)
Query: 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGA------ISAGRGIGKTTLNAWLVL 99
F P +Q + + + H + +++ + K I G GKT + A
Sbjct: 212 AEFRPPVPYQDQILLSL--HDIKAMDLHQENLAKQIGDKHRLIRGVAGSGKTLILASRAK 269
Query: 100 WLMSTRPGISVIC------LANSETQLKTTLWAEVSKWLSLLPNKH-WFEMQSLSLHPAP 152
L P ++ LA QL + E KH +
Sbjct: 270 LLAKEHPDWKILILCYNISLAQGIRQLINHMLREPDSLFDFDFTKHDGLADTAYGQIIVR 329
Query: 153 WYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
+ + L L I + Y E+ + TY ++ DE I
Sbjct: 330 NFHEWLKHDLKITEQQI-----PYILEKLEKGEAILPTYDAILV-DEGQDFSSDWLALIS 383
Query: 213 GFLTERNANRFWI---MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI 269
L + + + RR + K I+ R I +
Sbjct: 384 KLLNPETQSLLLVEDRAQTIYRRKRSYAQDTGLNFQGRSKILTINYRNTAQIVKFAWDFY 443
Query: 270 IARYGLDSDVTRVEVCGQFPQQDID 294
L + V E G+
Sbjct: 444 RTHSVLKNKVAHREFEGEIIAPQST 468
>gi|212526426|ref|XP_002143370.1| signal sequence receptor alpha subunit, putative [Penicillium
marneffei ATCC 18224]
gi|210072768|gb|EEA26855.1| signal sequence receptor alpha subunit, putative [Penicillium
marneffei ATCC 18224]
Length = 645
Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 25/186 (13%), Positives = 56/186 (30%), Gaps = 11/186 (5%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + + A P + +I G+GK+T + + +L+ + V
Sbjct: 415 DLLHEIQAVTAPIAKGQAPRPYVISIVGVNGVGKSTNLSKICFFLLQNNYRVLVAACDTF 474
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ L V L ++ E++ L+ + D + +
Sbjct: 475 RSGAVEQLRVHVRNLTELSARENIGEVE---LYEKGYGKDAANV---AKDAVAYGAANKF 528
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDV-----INLGILGFLTERNANRFWIMTSNPR 231
DT HN + ++ + + + ++G + A F + R
Sbjct: 529 DVVLIDTAGRRHNDQRLMSSLEKFAKFANPDKIFMVGEALVGTDSVMQARNFNQAFGSGR 588
Query: 232 RLSGKF 237
L G
Sbjct: 589 NLDGFI 594
>gi|326918311|ref|XP_003205433.1| PREDICTED: probable ATP-dependent RNA helicase DDX60-like
[Meleagris gallopavo]
Length = 1887
Score = 39.9 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 16/112 (14%)
Query: 29 SNFVLHFFPWGEKGTPLEGFSA--PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGR 86
++ ++ E+ P P +WQ E ++ VD + I A
Sbjct: 867 LQYMDYYLLREERNDPDPRVQHFIPDTWQRELLDAVDNNESAV------------IVAPT 914
Query: 87 GIGKTTLNAWLVLWLMS-TRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
GKT ++ + + T V+ +A ++ + + + S++ LP+
Sbjct: 915 SSGKTY-ASYYCMEKVLKTSDEGVVVYVAPTKALVNQVVGSVYSRFTKKLPD 965
>gi|291236754|ref|XP_002738303.1| PREDICTED: replicase/helicase/endonuclease-like [Saccoglossus
kowalevskii]
Length = 2339
Score = 39.9 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 7/120 (5%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLN------AWLVLWLMSTRP-G 107
QL+ V CLN+VN + + F ++ G G GK+ L A +L P
Sbjct: 1653 QLDIFYTVREWCLNTVNGESIDPFYMFLTGGAGTGKSHLVKAIYYEASRILARALPNPDD 1712
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
ISV+ A + + S+ + S + + I +
Sbjct: 1713 ISVLLTAPTGVAAFNINAGTIHSTFSIAIDAKLPYQPLGEEKMNTLRSKMASLKILIIDE 1772
>gi|28378987|ref|NP_785879.1| prophage Lp2 protein 35 [Lactobacillus plantarum WCFS1]
gi|28271825|emb|CAD64730.1| prophage Lp2 protein 35 [Lactobacillus plantarum WCFS1]
Length = 219
Score = 39.9 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 19/193 (9%), Positives = 54/193 (27%), Gaps = 14/193 (7%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
I RG K+ A +++ + +++ + + KT+ + E ++ + +F
Sbjct: 32 IKGSRGSKKSVTTAHNLIYRLVKYHWSNILVVRRNANTNKTSTFVECKNAINDFHLERYF 91
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + G+D + + + +
Sbjct: 92 KYNESLPEITYLPTGQKIIFRGLD-----------DPLKLTSVNVLTGELCWLWVEEAYE 140
Query: 202 GTPDVINLGILGFLTERNANRFW---IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
++ L + F+ + + E F++ DD R
Sbjct: 141 IESFSKLQTVIESLRGNDPQVFYQVTLTFNPWNEHHWLKREFFDQKRDDAFVRTTTVRCN 200
Query: 259 EGIDPSFHEGIIA 271
E + + + +
Sbjct: 201 EFVSDEYKQRLYR 213
>gi|297848822|ref|XP_002892292.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
lyrata]
gi|297338134|gb|EFH68551.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
lyrata]
Length = 1406
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 9/121 (7%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA-EVSKWLSLLPNKHWFEMQS 145
G GKT L + + P + +A + L WA E KW +P + +
Sbjct: 862 GTGKTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNLSSLDF 918
Query: 146 LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD 205
+ ++ + S + M + YS + + +G + ++ +G D
Sbjct: 919 TGKESSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILGI-----SYNLYEKLAGVKD 973
Query: 206 V 206
Sbjct: 974 E 974
>gi|261209694|ref|ZP_05924021.1| phage terminase [Enterococcus faecium TC 6]
gi|289566821|ref|ZP_06447232.1| phage terminase, large subunit [Enterococcus faecium D344SRF]
gi|260076354|gb|EEW64154.1| phage terminase [Enterococcus faecium TC 6]
gi|289161398|gb|EFD09287.1| phage terminase, large subunit [Enterococcus faecium D344SRF]
Length = 564
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 29/199 (14%), Positives = 60/199 (30%), Gaps = 18/199 (9%)
Query: 12 EQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLN 68
EQ L + + + E + P W+ +
Sbjct: 27 EQLLLKNYLEERVFTR--EDIYFDKQMVEDSINIPAQYFPFELIPWEKFLQCFIYGVRWK 84
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---VICLANSETQLKTTLW 125
+ + GRG GKT +W +L++ + GI + AN+E Q KT+ +
Sbjct: 85 K--DKTLVFNRYLTLMGRGNGKTGYASWNNFFLLTAKHGIKNYNIDIFANNEDQAKTS-F 141
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+V + + P+ ++ ++ +++ + + F
Sbjct: 142 EDVYQVIKAHPDLDKKVFKATKEVIKNIATNSKLRYNTANART-----KDGKRPGANRFD 196
Query: 186 GHH--NTYGMAIINDEASG 202
H Y M + G
Sbjct: 197 EIHENEDYSMMNVATSGGG 215
>gi|238882865|gb|EEQ46503.1| hypothetical protein CAWG_04858 [Candida albicans WO-1]
Length = 1929
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 14/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W P V+ +A + ++ V W +
Sbjct: 1132 VFVGSPTGSGKT-VVAELAIWHAFNEFPSSKVVYIAPMKALVRER----VDDWRERI--- 1183
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIIN 197
++ S D L + + + +I
Sbjct: 1184 ----CKNTSHRLVELTGDSLPTIQEVKEADIIITTPEKFDGISRNWQTRKFVQQVSLVIM 1239
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + ++ N
Sbjct: 1240 DEIHLLASDRGPILEMIVSRMN 1261
>gi|241956051|ref|XP_002420746.1| RNA helicase, putative; antiviral helicase, putative [Candida
dubliniensis CD36]
gi|223644088|emb|CAX41831.1| RNA helicase, putative [Candida dubliniensis CD36]
Length = 1926
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 14/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W P V+ +A + ++ V W +
Sbjct: 1132 VFVGSPTGSGKT-VVAELAIWHAFNEFPSSKVVYIAPMKALVRER----VDDWRERI--- 1183
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIIN 197
++ S D L + + + +I
Sbjct: 1184 ----CKNTSHRLVELTGDSLPTIQEVKEADIIITTPEKFDGISRNWQTRKFVQQVSLVIM 1239
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + ++ N
Sbjct: 1240 DEIHLLASDRGPILEMIVSRMN 1261
>gi|88813625|ref|ZP_01128856.1| Type III restriction enzyme, res subunit [Nitrococcus mobilis
Nb-231]
gi|88789130|gb|EAR20266.1| Type III restriction enzyme, res subunit [Nitrococcus mobilis
Nb-231]
Length = 531
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 65/263 (24%), Gaps = 23/263 (8%)
Query: 37 PWGEKGTPLE--GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLN 94
P+ + LE +Q E + + G GKT
Sbjct: 112 PFIRQPASLEATPGYGLFDYQREIVLRTQHVLEEPPRKALLHMPT-------GSGKTRTA 164
Query: 95 AWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWY 154
+ + V LANS E+ + + + W + S+ ++
Sbjct: 165 MHFIARHLQKYGPTLVCWLANS---------GELLEQAADEAERSWRMLGDRSIGIYRFW 215
Query: 155 SDVLHCSLGIDSKHYSTMCRT--YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
D + + R + + DEA ++
Sbjct: 216 GDHSVDLGSVRDGVLVAGFAKMHAAYLREQNTLIALGDRSSLTVVDEAHQAIAPTYRSVI 275
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
L + + + S + D + ++ + DP +IA
Sbjct: 276 DALYTKRPVNALLGLTATPGRSWDDAGADKELSDFFGGEKVTLTVKDYPDPVSF--LIAE 333
Query: 273 YGLDSDVTRVE-VCGQFPQQDID 294
L + R G P D
Sbjct: 334 GYLANPRFRTLAFDGPIPLSKKD 356
>gi|68467783|ref|XP_722050.1| potential translation-regulating helicase [Candida albicans SC5314]
gi|68468100|ref|XP_721889.1| potential translation-regulating helicase [Candida albicans SC5314]
gi|46443831|gb|EAL03110.1| potential translation-regulating helicase [Candida albicans SC5314]
gi|46443997|gb|EAL03275.1| potential translation-regulating helicase [Candida albicans SC5314]
Length = 1929
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 14/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W P V+ +A + ++ V W +
Sbjct: 1132 VFVGSPTGSGKT-VVAELAIWHAFNEFPSSKVVYIAPMKALVRER----VDDWRERI--- 1183
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIIN 197
++ S D L + + + +I
Sbjct: 1184 ----CKNTSHRLVELTGDSLPTIQEVKEADIIITTPEKFDGISRNWQTRKFVQQVSLVIM 1239
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + ++ N
Sbjct: 1240 DEIHLLASDRGPILEMIVSRMN 1261
>gi|328884268|emb|CCA57507.1| putative ABC transporter ATP-binding protein [Streptomyces
venezuelae ATCC 10712]
Length = 281
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 49/179 (27%), Gaps = 19/179 (10%)
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN---------SET 118
N ++ P + G GKTT + + + ++ + ++
Sbjct: 41 NGIDLVLPAGRFIGLVGPNGAGKTTTLSMIT--GLLRPDHGRILVAGHDVWADPESVAQV 98
Query: 119 QLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL-------GIDSKHYST 171
+ + + E + L + D L G +K
Sbjct: 99 KARIGILPEGLRLFERLSGRELLAYTGRLRGLPGAEVDKRAAQLLDVLDLTGSQNKLVVD 158
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
++ HN + +++ G V I G L A+ ++ S+
Sbjct: 159 YSTGMRKKIGLAAALLHNPE-VLFLDEPFEGVDPVSAQTIRGVLERYTASGATVVFSSH 216
>gi|291236967|ref|XP_002738409.1| PREDICTED: Dicer Related Helicase family member (drh-1)-like
[Saccoglossus kowalevskii]
Length = 877
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 40/151 (26%), Gaps = 21/151 (13%)
Query: 52 RSWQLEFME-VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
R +Q E ++ + H +SA G GKT + A++ L + R V
Sbjct: 188 RPYQAELVKPSIFGHN-------------VIVSAPTGSGKTRIAAFITLNHLKQRENAKV 234
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ L N ++ E S + + L
Sbjct: 235 LLLVNKVPLVEQHYKKEFKLLTSKYKVSKICGESAARVSLKHLVEKNDVVILT------- 287
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEAS 201
+ + T +I DE
Sbjct: 288 AQILENALNNGEDNEKLELTDFSLLIFDECH 318
>gi|56962313|ref|YP_174038.1| hypothetical protein ABC0537 [Bacillus clausii KSM-K16]
gi|56908550|dbj|BAD63077.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 893
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 30/193 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R++Q + + + A N + + A G GKT L L++ R
Sbjct: 15 RTYQKKILADMAALLQNK---------RVHLVAPPGSGKTVLGLELMV-----RLNKPTF 60
Query: 112 CLANSETQLKTTLWAEV-----------SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC 160
LA + WAE W+S + F + S
Sbjct: 61 ILAPTV--AIRNQWAERFLELFWQGDKTPDWISTDIRQPAFVTIATYQGLHSLCSFEDSG 118
Query: 161 SLGIDSKHYSTMCRTYS---EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTE 217
D +T +T S +ER + + + +I DEA + F
Sbjct: 119 GFEGDDVDIATEHQTESLGGKERKEAYKRLLDMDFQTLIVDEAHHLRAAWWKSTIDFRRS 178
Query: 218 RNANRFWIMTSNP 230
N +T+ P
Sbjct: 179 LNKPTIVALTATP 191
>gi|221316528|ref|ZP_03598333.1| phage-related terminase [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
Length = 489
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 37/299 (12%), Positives = 77/299 (25%), Gaps = 22/299 (7%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P W F+ + GR GK+ L A + + L+ P S
Sbjct: 5 PFQW--FFLVNALCWKYKQNPIKRRYEKSVLLI-GRKSGKSFLVALIFILLLLIEPEYSE 61
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ +L + + EV + ++ + Q + L +
Sbjct: 62 FYSVAPDKELSSIVKKEVEQTITASHPSIQKQFQITRSEVRCLLTKSKFIPLA--NSENR 119
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
R + D N Y + + + + I N +
Sbjct: 120 MDGRKANVFVADEVGALRNRYPIDAMQSSQMNMVNRTGILISTAYESLNNPMTEEVEYAQ 179
Query: 231 RRLSGKFYE-------IFNKPLDDWKRFQIDTRTVE----GIDPSFHEGIIARYGLDSDV 279
+ L + DW + D + R LD
Sbjct: 180 KVLDDLIDDPTLFALLYKPDDPKDWLSDKSLIEANPLAEVLEDNLEYLKKQRRTALDMPS 239
Query: 280 ----TRVEVCGQFPQQDI-DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV 333
+ F D + +IP + +++ + + +G D+++ + V
Sbjct: 240 SKKNFLTKHMNIFVDGDDSEVYIPSDELKKNMITTYDWT-GREVFVGVDLSQTTDNTAV 297
>gi|71032923|ref|XP_766103.1| RNA helicase [Theileria parva strain Muguga]
gi|68353060|gb|EAN33820.1| RNA helicase, putative [Theileria parva]
Length = 1764
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 37/136 (27%), Gaps = 6/136 (4%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
++A G GKT + + L PG + +A LK W L K+
Sbjct: 1008 VAAPTGSGKTLVAELGLFRLFDKFPGKIAVYIAP----LKALAHERFKDWCKKLHFKNIL 1063
Query: 142 EMQ-SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
++ S + L T + T +I DE
Sbjct: 1064 QLTGDTSSNNLDGQVHSERDELEKYD-IVITTPEKWDGISRHWRRRKLVTKVGLVIIDEL 1122
Query: 201 SGTPDVINLGILGFLT 216
+ I ++
Sbjct: 1123 HLLGESRGAIIESIIS 1138
>gi|331270737|ref|YP_004397331.1| phage terminase, large subunit [Clostridium botulinum BKT015925]
gi|329127700|gb|AEB77641.1| phage terminase, large subunit [Clostridium botulinum BKT015925]
Length = 534
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 40/348 (11%), Positives = 85/348 (24%), Gaps = 37/348 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP----GI 108
W+L ++ + + + I GRG GK + + W +ST G
Sbjct: 55 DWELFLFALIHCYY---KSTDMVVFDEFLIVMGRGNGKNGFISPVA-WYLSTHYHGIKGY 110
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKH---------WFEMQSLSLHPAPWYSDVLH 159
+V +ANSE Q T+ + ++ + L K + + S+
Sbjct: 111 NVDIIANSEDQAMTS-FNDIFEVLENTWKKSKKFFTKTKQQITNKKTKSYIKFNTSNAKT 169
Query: 160 CSLGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEA---SGTPDVINLGIL 212
+ Y + G + I G D
Sbjct: 170 KDGKRSACLIFDEIHEYENYDTIKVFTSGFGKRKHSRVFYITTNGYVRGGVLDEQLKIAH 229
Query: 213 GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIAR 272
L + + + + D+W + + + +
Sbjct: 230 DVLDGKIKDLGLLPLIYKIDS-----KEEVDNTDNWVKACPSLPYFPNLKKEMDKEFVKM 284
Query: 273 YGLDSDV--TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLIMGCDIAEEG 328
+ + Q + +P I A NR + + D A
Sbjct: 285 KYQNHVALDFMTKRMNLPAQDAFTAAVPWEKI-LATNRPIPYESLQGMQCLGAIDYAMVT 343
Query: 329 GDNTV--VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIII 374
+ + G + ++ + + +I
Sbjct: 344 DFASCGLLFKYNGLRYWIEHTFVCHKALEVTSRPIKFPVQEMVEKGLI 391
>gi|312220092|emb|CBY00034.1| similar to activating signal cointegrator 1 complex subunit 3
[Leptosphaeria maculans]
Length = 2000
Score = 39.5 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W PG V+ +A + ++ V W
Sbjct: 1155 HTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWGK 1209
Query: 134 LLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L + ++ + + + + + + R++
Sbjct: 1210 RLAGPMGLKLVELTGDNTPDTRTIRDADVIITTPEKWDGISRSWQTRGYVR-------QV 1262
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1263 SLVIIDEIHLLGGDRGPILEIIVSRMN 1289
>gi|326772022|ref|ZP_08231307.1| conserved hypothetical protein [Actinomyces viscosus C505]
gi|326638155|gb|EGE39056.1| conserved hypothetical protein [Actinomyces viscosus C505]
Length = 370
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 49/347 (14%), Positives = 101/347 (29%), Gaps = 36/347 (10%)
Query: 60 EVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQ 119
V++ + + P I+ RG+GKT + L S R V+ +
Sbjct: 21 RVIEEFLESLDDGPGAPGLLELITGARGVGKTVMLTAL---GDSARERGWVVVDETAREG 77
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
L L AE ++ LS L K + SLSL + R ++
Sbjct: 78 LMDRLAAEFTRQLSQLAGKERSRLTSLSLSTPLGGGSATLEHAPTPEPSWRQKARALTQW 137
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---LTERNANRFWIMTSNPRRLSGK 236
+ H T + I DE P + L A +M P+ +
Sbjct: 138 LAE-----HGTGLLLTI-DEVHAIPREELRALSAEVQHLIREGAPIGLLMAGLPKAVEEL 191
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ L +R ++ ++ + + + + + ++ +
Sbjct: 192 LNDDITTFLRRAERIELGEVAIDDV----CDALKSTFDAGEKALSNDLAQECANATGGYP 247
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
+ ++ + P+ A T LR G ++
Sbjct: 248 FMIQLV---GYQVWKHSGDGPVTQPAVAAGT----TAARLRLGNLVH------------- 287
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA 403
+ L + R + + ++ ++ D E + V V +
Sbjct: 288 APALRDLSDVDRTMLVCMAKDDGPSQIADIAERMDRPVNYVSVYRNR 334
>gi|298707554|emb|CBJ30138.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 2343
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 16/157 (10%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK- 138
+ A G GKT + ++ +++ PG + +A + + L W K
Sbjct: 1476 VLLGAPTGSGKTAVAEIAIMRMLNQHPGAKAVYVAPLKALARERL----KDWREKFGKKM 1531
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
++ H + + + + + R + G +I D
Sbjct: 1532 DMGVLELTGDHTPDGDALRRASIIVTTPEKWDGVTRGWKSRDYVKDTG-------LVIMD 1584
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
E + + ++ +I S +R +G
Sbjct: 1585 EIHLLGEDRGPVLEVIVS----RMRYIAASAGKRDTG 1617
>gi|61806451|ref|YP_214228.1| DNA maturase beta subunit [Prochlorococcus phage P-SSP7]
gi|61374376|gb|AAX44230.1| DNA maturase beta subunit [Prochlorococcus phage P-SSP7]
gi|265525485|gb|ACY76251.1| DNA maturase beta subunit [Prochlorococcus phage P-SSP7]
Length = 577
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 25/78 (32%)
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
+ I A RG+GK+ + VLW + ++ ++ S+ + +
Sbjct: 40 QSGPKRLQIQAFRGVGKSWITGAFVLWTLFNDAEKKIMIISASKERADNMSIFLQKLIIE 99
Query: 134 LLPNKHWFEMQSLSLHPA 151
KH +
Sbjct: 100 TPWLKHLRPKSDDARWSR 117
>gi|300121423|emb|CBK21803.2| unnamed protein product [Blastocystis hominis]
Length = 1028
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 40/149 (26%), Gaps = 11/149 (7%)
Query: 57 EFMEVVDAHCL-NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
+ + + C + +++A RG GK+ L + +V A
Sbjct: 266 QVLRALTGLCRTADQASAKTRQTTVSVTASRGRGKSAAL-GLTVAGAIGFGYSNVFVTAP 324
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
S ++T + L + E + +P K + + +
Sbjct: 325 SAENVQTLF----DFAVKGLKALKFAEHTDFEVIYSPREEQAHWVVRVNVFKTHRQVVQF 380
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTP 204
I DEA+ P
Sbjct: 381 VDPAEASKLAQAE-----LCIVDEAAAIP 404
>gi|195498547|ref|XP_002096570.1| GE25739 [Drosophila yakuba]
gi|194182671|gb|EDW96282.1| GE25739 [Drosophila yakuba]
Length = 1495
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 42/161 (26%), Gaps = 12/161 (7%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ G+GKT + A L+ P ++ +A + + + A
Sbjct: 78 TLVVLPTGLGKTFIAAVLMFNFYRWYPKGKIVFMAPTRPLVSQQIHASQKIM-------- 129
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT--YSEERPDTFVGHHNTYGMAIIN 197
+ ++ L + + + D I+
Sbjct: 130 -PFPSADTVQLTGQLPRPKRAELWGSKRVFFATPQVVHSDMLETDGGSTFPFESIKLIVV 188
Query: 198 DEASGTPDVINLG-ILGFLTERNANRFWIMTSNPRRLSGKF 237
DEA ++ L RN N + S + +
Sbjct: 189 DEAHRAKGRYAYTQVVDCLMARNRNFRMLALSATPGRTMED 229
>gi|224282225|ref|ZP_03645547.1| DNA or RNA helicase of superfamily II [Bifidobacterium bifidum
NCIMB 41171]
Length = 1061
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 30/243 (12%), Positives = 61/243 (25%), Gaps = 39/243 (16%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFS-APRSWQLEFME 60
S+ + P TE + D F + P + LEG P + Q E +
Sbjct: 207 SQIADSKPLTE-EWIKQYEED--------FKKYAPPRRDILKSLEGREIQPNAMQKEALA 257
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ + + I + G GKT L+A + + ++ +A + L
Sbjct: 258 SLKKLREQGEH-------RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMIL 306
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K + + P S + +
Sbjct: 307 KAAMKSYQKVL--GCPQSELGLYTGTSKQQ----------------DRRYVFATVQTMRQ 348
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
P+ + ++ DE ++ + + T F
Sbjct: 349 PEALAQFASDEFDYVLVDEVHHAGAEGYQRVIDHFRDADFMLGMTATPERTDGINIFELF 408
Query: 241 FNK 243
+
Sbjct: 409 GHN 411
>gi|156035735|ref|XP_001585979.1| hypothetical protein SS1G_13071 [Sclerotinia sclerotiorum 1980]
gi|154698476|gb|EDN98214.1| hypothetical protein SS1G_13071 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1974
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 45/147 (30%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + L +W PG V+ +A + ++ V W +
Sbjct: 1159 HTPANVLLGSPTGSGKT-IACELAMWWAFREKPGSKVVYIAPMKALVRER----VKDWGA 1213
Query: 134 LLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L + + ++ + + + + + + R+++
Sbjct: 1214 RLTKQMGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWTTRGYVR-------QV 1266
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1267 SLVIIDEIHLLGGDRGPILEIIVSRMN 1293
>gi|323693306|ref|ZP_08107524.1| SNF2 domain-containing protein [Clostridium symbiosum WAL-14673]
gi|323502789|gb|EGB18633.1| SNF2 domain-containing protein [Clostridium symbiosum WAL-14673]
Length = 447
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 31/245 (12%), Positives = 66/245 (26%), Gaps = 31/245 (12%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGI 108
P +Q ++ ++ H + +V G+GKT + + + +
Sbjct: 5 PHDYQAYAIDYIETHPVAAVLLDM------------GLGKT-VISLTAIADLLFDSFEAH 51
Query: 109 SVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
++ +A + T AE+ KW L + + + + ++
Sbjct: 52 RILVVAP-LRVARDTWPAEIRKWQHLKHLTFAVCVGTPKERKVALMAGADITIINRENLQ 110
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWI--- 225
+ + + ++ DE S + + L R + + I
Sbjct: 111 WLIESSGFPFD------------YDMVVIDELSSFKNHNSKRFKSLLKVRPSVKRIIGLT 158
Query: 226 MTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVC 285
T + L + E L I P G I +
Sbjct: 159 GTPSSNGLMDLWAEFRLLDLGKRLGRFITEYRNNYFVPDKRNGQIIYSYKPQPYAEERIY 218
Query: 286 GQFPQ 290
GQ
Sbjct: 219 GQISD 223
>gi|156554507|ref|XP_001605046.1| PREDICTED: similar to ENSANGP00000013875 [Nasonia vitripennis]
Length = 2105
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 39/141 (27%), Gaps = 12/141 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT ++ + + P V+ +A + ++ + W L +
Sbjct: 1293 VLLGAPTGSGKTIAAEIAMMRVFRSEPDRKVVYIAPLKALVRERM----KDWTKRLGGQL 1348
Query: 140 WFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ + + + + R++ II D
Sbjct: 1349 GKNVVELTGDVTPDVKVISTSDVIVTTPEKWDGISRSWQTRNYV-------QKVALIIID 1401
Query: 199 EASGTPDVINLGILGFLTERN 219
E + + ++ N
Sbjct: 1402 EIHLLGEDRGPVLEVIVSRTN 1422
>gi|51244372|ref|YP_064256.1| helicase [Desulfotalea psychrophila LSv54]
gi|50875409|emb|CAG35249.1| related to predicted helicase [Desulfotalea psychrophila LSv54]
Length = 1053
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 35/222 (15%), Positives = 59/222 (26%), Gaps = 31/222 (13%)
Query: 19 MWSDEI-----KLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
W K F + + F E TP PR +QL +E + A N+
Sbjct: 285 YWQSPEFEVFDKDRFQSVIQRFKQGVENSTPFFAEITPRPFQLRILESLTAARQNNS--- 341
Query: 74 NPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
F+ I A G GKT ++A I + +
Sbjct: 342 ----FRNLIVAATGTGKTVISAL---------DYQRYIAGRGKQE-------PLLFVAHR 381
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+ L + L + ++ S + +
Sbjct: 382 KEILEQAMGCFRTVLRDQNF--GELLVDHRVPTEWNHVFASIQSLNSKRPWRDFSREHFR 439
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+I DEA + T + +T+ P R+ G
Sbjct: 440 FVIIDEAHHGRAASYRCLFDE-TCIDPEILLGLTATPERMDG 480
>gi|330917073|ref|XP_003297665.1| hypothetical protein PTT_08155 [Pyrenophora teres f. teres 0-1]
gi|311329501|gb|EFQ94223.1| hypothetical protein PTT_08155 [Pyrenophora teres f. teres 0-1]
Length = 2004
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W PG V+ +A + ++ V W
Sbjct: 1153 HTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWGK 1207
Query: 134 LLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L + ++ + + + + + + R++
Sbjct: 1208 RLAGPMGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYVR-------QV 1260
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1261 SLVIIDEIHLLGGDRGPILEIIVSRMN 1287
>gi|329936128|ref|ZP_08285927.1| helicase-like protein [Streptomyces griseoaurantiacus M045]
gi|329304446|gb|EGG48325.1| helicase-like protein [Streptomyces griseoaurantiacus M045]
Length = 1056
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 8/139 (5%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q N+ + + +G I + G GKT A L PG V+
Sbjct: 18 QKARFREWAGSPFNTRSPVPEQGSRGTIVSATGSGKTITAAACALE---CFPGARVLVTV 74
Query: 115 NSETQLKT-----TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ L L S +++ ++ + SL + + + +
Sbjct: 75 PTLDLLVQTAQAWRLVGHRSPMVAVCSLENDAVLNSLGVRTTTNPIQLALWAGHGPVVVF 134
Query: 170 STMCRTYSEERPDTFVGHH 188
+T E D G
Sbjct: 135 ATYASLVDREDIDAPEGQR 153
>gi|195443932|ref|XP_002069642.1| GK11465 [Drosophila willistoni]
gi|194165727|gb|EDW80628.1| GK11465 [Drosophila willistoni]
Length = 2181
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 41/142 (28%), Gaps = 13/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ P V+ +A + +K ++ W
Sbjct: 1353 VLLGAPTGSGKTIVAEIAIFRALNKEPKSKVVYIAPLKALVKER----IADWQQRFERSP 1408
Query: 140 WFE--MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
++ + + + + + R++ + I+
Sbjct: 1409 LGLKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRSWQTREYV-------QHVSLIVI 1461
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + I ++ N
Sbjct: 1462 DEIHLLGEDRGPVIEVIVSRTN 1483
>gi|168000545|ref|XP_001752976.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
gi|162695675|gb|EDQ82017.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
Length = 653
Score = 39.5 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 32/255 (12%), Positives = 64/255 (25%), Gaps = 25/255 (9%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLH--FFPWGEKGTPL--EGFSAPRSWQLEFMEVVDAH 65
+ + K MW + FV W + G + E QLE ++
Sbjct: 57 KVDIKDMTFMWRRPCSVR-KAFVRGERLDNWNDSGDGVLEEDVRLVGMAQLEAHPSLENA 115
Query: 66 CLNSVNNPNPEVFKGAI---------SAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + + + G GK+ L + M P + +A
Sbjct: 116 MHPHQLEGFKFLSRNLVEEDSGGCMLAFAPGTGKSFLIISFIQSFMVQVPNARPMIVAPK 175
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+ + W+ EM L+L+ A + +L + S +
Sbjct: 176 ---------SMLRPWMQEFKKWEVEEMLVLNLYEADDHVKMLKQWMATPSVLLVGYSQFI 226
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ I+ DE + R + + +
Sbjct: 227 NPSGEVGKYLTEGPG--MIVMDEGHLARTEETKILKSLTRVHTRRRVLLSGTPFNNNFEE 284
Query: 237 FYEIFNKPLDDWKRF 251
FY ++
Sbjct: 285 FYTTLELVRPNFMSR 299
>gi|124516485|gb|EAY57993.1| putative helicase [Leptospirillum rubarum]
Length = 1054
Score = 39.5 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 26/207 (12%), Positives = 57/207 (27%), Gaps = 29/207 (14%)
Query: 39 GEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV 98
+ L P +Q E ++ ++ + + F+ + + G GKT + A+
Sbjct: 307 DDSSDSLPFDIRPYPFQQEILDRLEVEREVNGS------FRNLVVSATGTGKTVIAAFDF 360
Query: 99 LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVL 158
RP + + +A+ + L+ +L KH+ + W +
Sbjct: 361 RRFREKRPDATFLFVAHRKEILEQSL-------------KHFRHILEDRNFGELWVAGSR 407
Query: 159 HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTER 218
+ H ++ D Y + + L
Sbjct: 408 PVHVR----HVFASIQSLDRAELDRISPERFDYVVID------EIHHGMAPTYRRLLETL 457
Query: 219 NANRFWIMTSNPRRLSGKFYEIFNKPL 245
+T+ P R G +
Sbjct: 458 KPRILLGLTATPERSDGLDVRRYFNDR 484
>gi|302519879|ref|ZP_07272221.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|302428774|gb|EFL00590.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length = 552
Score = 39.5 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 65/493 (13%), Positives = 131/493 (26%), Gaps = 86/493 (17%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL-----------WLMST 104
E E V + + V +G IS RG GK+ + + L W
Sbjct: 42 AEMAEFVLRYYELNPITGRRIVRRGVISRPRGWGKSPFVSAIALAEACGPVVPNGWDADG 101
Query: 105 RP---------GISVICLANSETQLKTTLWAEVSKWLSLLPNKH--WFEMQSLSLHPAPW 153
P V A +E Q + + W + + P E ++
Sbjct: 102 EPVGMGWDRVRTPLVQLAAATEKQTENS-WMPLLEMARSGPVLDEYGLEPLDTVVYLRRG 160
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP----DVINL 209
+ + S + E G N G
Sbjct: 161 KIEPITASATSAKGAKACFASLDQTEDWLPANGGRKLAKTMRFNAGKIGGSLIETPNAFT 220
Query: 210 GILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR--------FQIDTRTV--- 258
+ E++A + + R SG Y+ P D ++
Sbjct: 221 PGEDSVAEQSAADWKAIREGRSRGSGLLYDHREAPADTDMTDEQSLVYGLRVAYGDSSDH 280
Query: 259 --------EGIDPSF--HEGIIARY---GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
P + E + A + D R + Q DS++ + A
Sbjct: 281 PDGCVLHDPPCAPGWSPIERLAADFWDTSNDPQELRADYLNQ-ITHAADSWLSEPEVRAA 339
Query: 306 LNREPCPDPYAPLIMGCDIAEEGG----DNTVV--VLRRGPVIEHLFDWSKTD------- 352
+ +P +++G D + D T + + + W + D
Sbjct: 340 SDLGKVVEPGERIVLGFDGSRRRNRKVTDATALVGCRLSDGHVFPIGVWEQPDGAAGRDW 399
Query: 353 ---LRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ + ++Y + D + D+ G + + ++
Sbjct: 400 QVPVVEVLATVHEAFDRYDVVGMYADPAKWESHVADWEAAYGRRLKVQATRAHPIEWWMT 459
Query: 410 RNRRTELHVKMAD----WLEFASLINH--SGLIQNLKSLKSFIVPNTGELAIESKRVKGA 463
R+ L V+ + L L + S L+++L + + + ++ E
Sbjct: 460 GG-RSVLIVRALEKFHTALTEGELTHDGASALVRHLLNARRRKTRSGLQITKE------- 511
Query: 464 KSTDYS---DGLM 473
D + D +
Sbjct: 512 -HPDSAKKIDAAV 523
>gi|220916408|ref|YP_002491712.1| Terminase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219954262|gb|ACL64646.1| Terminase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 556
Score = 39.5 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 25/196 (12%), Positives = 53/196 (27%), Gaps = 18/196 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT--TLNAWLVLWLMSTRPGISV 110
W+ + V + I G+G GK+ L L M V
Sbjct: 69 PWEAFLIVNVFGFRRRDTGHRRFTFVNVWI--GKGNGKSALAAALGLYLAFMDGEQDAEV 126
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ A S + W + L + + + +
Sbjct: 127 LTYAFSRENTRHV-WETAKQMLRRKQGTELDVAKEYEIELNAVTLYQARTNSVFKA---- 181
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
H + A+I DE D + + G + +R + +++
Sbjct: 182 ---------NSSNPDAQHGSRPSALIIDELHTVRDELWDTLKGAIVKRANSLMLTLSTGG 232
Query: 231 RRLSGKFYEIFNKPLD 246
+S K ++++ +
Sbjct: 233 FDISSKGFKVYEYDRN 248
>gi|319788397|ref|YP_004147872.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1]
gi|317466909|gb|ADV28641.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1]
Length = 726
Score = 39.5 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 55/378 (14%), Positives = 108/378 (28%), Gaps = 50/378 (13%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E + H L + AG G GKT + + WL + LA
Sbjct: 14 QREAVSAPPGHYL--------------VLAGAGSGKTRVLTHRIAWLNEVHGVPAHGILA 59
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ T E+ + +MQ + W + + H++
Sbjct: 60 VTFT---NKAAGEM---------RSRADMQLRNGSRGMWIGTFHGIAHRLLRLHWNEARL 107
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASG-TPDVINLGILGFLTERNANRFWIMTSNPRRL 233
S + D+ + + G P + + I + +
Sbjct: 108 PESFQVLDSDDQQRLVKRVVQQLELDEGRFPPRQITWWINAQKDEGRRPQHI-----QAV 162
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + E + ++ +Q +D + D+ +F + I
Sbjct: 163 NDPWTESMRRA---YELYQERCDRAGLVDFAELLLRAHELLRDNPALLQHYRTRFRELLI 219
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
D F N I+ A R D ++G D+ + RG +E++ + +
Sbjct: 220 DEFQDTNAIQYAFVRVLAGDTGRVFVVG-------DDDQAIYGWRGAKVENVQQFLR--D 270
Query: 354 RTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRR 413
I I+ AN A + +G ++ G+ VD+ N
Sbjct: 271 FPGAQTIRLEQNYRSTANILGAAN---AVIAHNPDRIGKQLWTDSGEGEPVDVYAAYNEM 327
Query: 414 TEL---HVKMADWLEFAS 428
E ++ W+
Sbjct: 328 DEARFVVERIRQWVRDGG 345
>gi|29566316|ref|NP_817883.1| gp32 [Mycobacterium phage Corndog]
gi|29425041|gb|AAN01964.1| gp32 [Mycobacterium phage Corndog]
Length = 503
Score = 39.5 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 49/422 (11%), Positives = 102/422 (24%), Gaps = 53/422 (12%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ ++ A+ + V F +I R GKT ++ L PG+ I
Sbjct: 74 DRWQDGIAGLLLAYRPDGVLAHTVGGFGVSIP--RQCGKTHTLTAVLFGLCVEYPGVLAI 131
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ +KT + +Q+ + D
Sbjct: 132 WTS---HHVKTNTET-------------FQAVQAYAKRERVAPFIRKVTLGSGDEAVEFA 175
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL--TERNANRFWIMTSN 229
+ G +++DEA +L L + + +
Sbjct: 176 NGSRILFGARERGFGRGIPGVDVLMSDEAQILTQRAMQDMLATLNTSRLGLHIYVGTPPK 235
Query: 230 PRRLSGKFYEIFNKPLDDWKRFQID--TRTVEGIDPSFHEGIIARYG------------- 274
P S F + + + + D E +
Sbjct: 236 PTDNSEMFSVMRREAETGEATDIVWIECGAEDTGDLDDIEQWMNANPSCPHRTPVVSIQR 295
Query: 275 ----LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD 330
LD D R E G + + SF + +R A L++
Sbjct: 296 LRRRLDDDGFRREALGIWDASESSSFDLAAWSDLG-DRGVDAPTRAALVLDMSPDRRHCW 354
Query: 331 NTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEML 390
V E + + T + + R + N L
Sbjct: 355 IGVAGDVDTDDGEKVLLMAMETTAATAVEKVRQLVNERDIVDVAITNGAARALEPALVEA 414
Query: 391 GYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASL--INHSGLIQNLKSLKSFIVP 448
R+ + + + ++ S+ ++ + L + ++ +
Sbjct: 415 AIEYQRLSQADV-----------AAAYSTLQEGIKNKSVCHLDQAELNNAMMMTRTRFMT 463
Query: 449 NT 450
+
Sbjct: 464 SG 465
>gi|313139364|ref|ZP_07801557.1| DNA repair helicase rad25 [Bifidobacterium bifidum NCIMB 41171]
gi|313131874|gb|EFR49491.1| DNA repair helicase rad25 [Bifidobacterium bifidum NCIMB 41171]
Length = 1008
Score = 39.5 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 30/243 (12%), Positives = 61/243 (25%), Gaps = 39/243 (16%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFS-APRSWQLEFME 60
S+ + P TE + D F + P + LEG P + Q E +
Sbjct: 154 SQIADSKPLTE-EWIKQYEED--------FKKYAPPRRDILKSLEGREIQPNAMQKEALA 204
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ + + I + G GKT L+A + + ++ +A + L
Sbjct: 205 SLKKLREQGEH-------RAIIVSATGTGKTYLSA----FDVREYRPRRMLYIAQQQMIL 253
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
K + + P S + +
Sbjct: 254 KAAMKSYQKVL--GCPQSELGLYTGTSKQQ----------------DRRYVFATVQTMRQ 295
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
P+ + ++ DE ++ + + T F
Sbjct: 296 PEALAQFASDEFDYVLVDEVHHAGAEGYQRVIDHFRDADFMLGMTATPERTDGINIFELF 355
Query: 241 FNK 243
+
Sbjct: 356 GHN 358
>gi|313207215|ref|YP_004046392.1| type i site-specific deoxyribonuclease [Riemerella anatipestifer
DSM 15868]
gi|312446531|gb|ADQ82886.1| Type I site-specific deoxyribonuclease [Riemerella anatipestifer
DSM 15868]
gi|315022983|gb|EFT36004.1| type III restriction protein res subunit [Riemerella anatipestifer
RA-YM]
gi|325335339|gb|ADZ11613.1| Type I site-specific restriction-modification system, R
(restriction) subunit related helicase [Riemerella
anatipestifer RA-GD]
Length = 1147
Score = 39.5 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 39/327 (11%), Positives = 87/327 (26%), Gaps = 15/327 (4%)
Query: 52 RSWQLEFMEVVDAHCL-NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
R +QL+ ++ V + N + K + G GKT +A +V +
Sbjct: 364 RPYQLQAIQRVAETLVGEHRGNLRGKSRKALLVMATGSGKTRTSAAMVDMFTKCNWAKRI 423
Query: 111 ICLA---NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ LA TQ K + ++ + + + + + + +
Sbjct: 424 LFLADRNALVTQAKNAFKEHLPHLSAIDLTQDKDDGTARVVFSTYPTMMNRIDQITSNGE 483
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT 227
++ + + Y D I +G+ + + +
Sbjct: 484 RQFSIGHFDVIIIDEAHRSVYQKYQAIF------DYFDAILIGLTATPKKDIDRNTYQLF 537
Query: 228 SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQ 287
YE+ + + +V D G
Sbjct: 538 EIEDDNPTFAYELDTAVKEGF-LVPPKALSVPVKYVREGIKYKELNEKDKAEIETLF-GL 595
Query: 288 FPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGD---NTVVVLRRGPVIEH 344
+++ D I N I +L D +M + E GD T++ +
Sbjct: 596 DSEENEDFEISKNKINSSLFNTDTVDKVLSYLMEKGLKVESGDKLGKTIIFAKNHNHAVF 655
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDA 371
+ + +++ Y A
Sbjct: 656 IEERFNKMYPEYGGTFLRVIDNYEDKA 682
>gi|182678749|ref|YP_001832895.1| DEAD/DEAH box helicase domain-containing protein [Beijerinckia
indica subsp. indica ATCC 9039]
gi|182634632|gb|ACB95406.1| DEAD/DEAH box helicase domain protein [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 479
Score = 39.5 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 18/84 (21%)
Query: 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR 105
+GF+ P Q + + + + + G GKT A +L + T
Sbjct: 20 QGFTRPTPIQAQAIPAILE------GRDLIGIAQT------GTGKTAAFALPILHALITH 67
Query: 106 P------GISVICLANSETQLKTT 123
P G V+ L+ +
Sbjct: 68 PTPAPRGGARVLVLSPTRELASQI 91
>gi|157123114|ref|XP_001660014.1| hypothetical protein AaeL_AAEL009397 [Aedes aegypti]
gi|108874507|gb|EAT38732.1| conserved hypothetical protein [Aedes aegypti]
Length = 646
Score = 39.5 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 44/329 (13%), Positives = 93/329 (28%), Gaps = 44/329 (13%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAIS---------------AGRGIGKTTLNAWLVL 99
Q E M+ + + + E A+ G GK++ ++
Sbjct: 142 QRETMDEITSFQWIDIGISTNEEQMVAVRNIVNRTSFPAPYVLFGPPGTGKSSTLVEVIG 201
Query: 100 WLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLH 159
+ P +++ +A S S+ L+++P KH F S S D
Sbjct: 202 QIYKLHPEANMLVVAPSNFAANEIT----SRILNVVPEKHVFRYFSRSSIRTVNDIDENI 257
Query: 160 CSLGI----------DSKHYSTMCRTYSEERPDTF--VGHHNTYGMAIINDEASGTPDVI 207
+ Y + + +I DE ++
Sbjct: 258 LQISNMADKKYDLPYYQDIYLARIVVTTLVTAGRLVQANIRAKHFRYVIIDECGSAKEIS 317
Query: 208 NLGILGFLTERNANRFW-IMTSNPRRLSGKFYEIFNKPLDDWKR---FQIDTRTVEGIDP 263
+L +G L I+ + + G + + +I + ++P
Sbjct: 318 SLVPIGGLATCGDEIHASIVLAGDPKQLGPVIQHNYLKQTNHNVSLLERIMKLDLYEMNP 377
Query: 264 SFHEGIIARYGLDSDVTR-VEVCGQFPQQD--IDSFI---PLNIIEEALNREPCPDPYAP 317
+ E D R + FP + + AL P+P P
Sbjct: 378 TTKEYNNRYITQLRDNFRSHSMLLNFPNKTFYAGQLRAKASPELTNWALGWHRLPNPKCP 437
Query: 318 LI---MGCDIAEEGGDNTVVVLRRGPVIE 343
LI + ++ + ++ + G ++
Sbjct: 438 LIFHSIFGNMQQHENSTSLFNVVEGELVL 466
>gi|164429395|ref|XP_957041.2| hypothetical protein NCU04472 [Neurospora crassa OR74A]
gi|157073461|gb|EAA27805.2| predicted protein [Neurospora crassa OR74A]
Length = 1535
Score = 39.5 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 30/288 (10%), Positives = 79/288 (27%), Gaps = 37/288 (12%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P +WQ + ++ +D + + A GKT ++ + + ++ +
Sbjct: 664 PDAWQRKVLDAIDENK------------SLLVIAPTSAGKTFISFYAMRKVLEANNDDVL 711
Query: 111 ICLANSETQLKTTL----------WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHC 160
+ +A ++ + + + ++ L + + L +
Sbjct: 712 VYIAPTKALVNQIAAEIQARFSKQYGQEARSRDTLNDASLEPRDCIVLWKHMTKHQIGQY 771
Query: 161 SLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
+ + + + + D S ++ N L +
Sbjct: 772 QVPTSLDPKKMLPSLVKKSDVTKWESALKDVLADWMLDPNSPFDELRND-----LRGERS 826
Query: 221 NRFWIMTSNPRRLSG------KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
+ G + YE +K+ + + +
Sbjct: 827 HGALPAIIFNYDRVGCETVLRELYETLKSAEAAYKQHDSKWLKKLAGFEEWKKRRESAKT 886
Query: 275 LDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR----EPCPDPYAPL 318
D+ + + + G + D + + +A NR DP APL
Sbjct: 887 KDTKMKQTKKTGLRNEDDDGAMSKGDRARDAANRELSVWDSFDPEAPL 934
>gi|126436464|ref|YP_001072155.1| hypothetical protein Mjls_3888 [Mycobacterium sp. JLS]
gi|126236264|gb|ABN99664.1| protein of unknown function DUF264 [Mycobacterium sp. JLS]
Length = 496
Score = 39.1 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 44/323 (13%), Positives = 86/323 (26%), Gaps = 34/323 (10%)
Query: 78 FKGAISAGRGIGKTTLNAWLV-LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ ++ GK+ L + ++ +WL+S P VI + + + A + ++ P
Sbjct: 52 ARLIVTMPPRTGKSVLTSQVLPVWLLSRDPDAEVIVKSYGDALAEEHS-AAARRLIAENP 110
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF-VGHHNTYGMAI 195
E+ + W + ST S D G A
Sbjct: 111 AVVGIELAADKQAVGRWRVAGHRGGMLAGGILSSTTGFGASVLLVDDPVKGAQEADSDAY 170
Query: 196 INDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDT 255
+ + ++ + + +P L+G P W+ I
Sbjct: 171 RRRLTAEFKASLMTRLMP----GASAIVVLTRWHPDDLAGSLLAE---PGSRWRCVNIPA 223
Query: 256 RTVEGIDPSF----------------HEGIIARYGL-DSDVTRVEVCGQFPQQDIDSFIP 298
+ G+ + E S G P I
Sbjct: 224 ISTAGVPDALGRERSGVAMTSAVGRTAEQFREIKSEVGSRAWAAMYLGT-PTTPEGGLIK 282
Query: 299 LNIIEEALNREPCPDPYAPLIMGCDIAEE-GGDNTVVVL----RRGPVIEHLFDWSKTDL 353
I+ P +++G D A+ GD T ++ G V ++
Sbjct: 283 AAWIDT-WRLPAAPPGTVKIVVGVDPADSGEGDETGIIAAALTADGVVALIADVSARMTS 341
Query: 354 RTTNNKISGLVEKYRPDAIIIDA 376
+ L I ++A
Sbjct: 342 DAWAVRAVQLAADVGASEIAVEA 364
>gi|331245260|ref|XP_003335267.1| nucleolus protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309314257|gb|EFP90848.1| nucleolus protein [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1092
Score = 39.1 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 47/150 (31%), Gaps = 15/150 (10%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q + + S ++A RG GK+ + + + ++ +
Sbjct: 271 QAKTLME-----FTSSITEKTLSSTVTLTASRGRGKSAAL-GMAIAVAVAHSYSNIFVTS 324
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
S LKT L+ + K L+ L + + W + ++ + + + +
Sbjct: 325 PSPENLKT-LFEFIFKSLTALGYEEHLDYNVHQSSNPEWKNCIVRVDIFRNHRQTIQYIQ 383
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ ++ DEA+ P
Sbjct: 384 PQDYKVLGQAE--------LVVIDEAAAIP 405
>gi|307940746|gb|ADN95987.1| polyprotein [Chionodraco hamatus]
Length = 2968
Score = 39.1 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 13/171 (7%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL------VLWLMSTRPGI 108
Q+ + CL+ ++ NP+ F I+ G G GK+ L L +L + P
Sbjct: 2284 QMSIFYQIRQWCLDKISGKNPDPFHVFITGGAGTGKSHLIKALQYETTRLLSPLCDHPDS 2343
Query: 109 S-VICLANSETQLKTTLWAEVSK-----WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
V+ A + A + S LP E + SL ++
Sbjct: 2344 VCVLLTAPTGIAAYNLDAATIHNTFSIGVNSKLPYTPLGEEKINSLRAKYRNVQIVIVDE 2403
Query: 163 GIDSKHYSTMCRTYSEERPDT-FVGHHNTYGMAIINDEASGTPDVINLGIL 212
H + I+ + S P V +
Sbjct: 2404 ISMVDHKLMAYIHGRLRQIKQCIDYSPFGKVSVIVVGDFSQLPPVKGNALY 2454
>gi|283787510|ref|YP_003367375.1| DNA helicase II [Citrobacter rodentium ICC168]
gi|282950964|emb|CBG90641.1| DNA helicase II [Citrobacter rodentium ICC168]
Length = 720
Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 38/293 (12%), Positives = 82/293 (27%), Gaps = 33/293 (11%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
++ ++ +V P + + AG G GKT + + WL++ +A +
Sbjct: 6 LLDSLNDKQREAVAAPRSNML---VLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMAVTF 62
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYS 177
T + +H + W + + H+
Sbjct: 63 TN------------KAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQD 110
Query: 178 EERPDTFVGHH-NTYGMAIINDEASGTPDVINLGILGFLTERNANR-FWIMTSNPRRLSG 235
+ D+ M +N + P + + + NP +
Sbjct: 111 FQILDSEDQLRLLKRLMKAMNLDDKQWPPRQAMWYINGQKDEGLRPHHLQSFGNPVEQTW 170
Query: 236 KFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
++ +Q +D + L+ +F +D
Sbjct: 171 ---------QKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDE 221
Query: 296 FIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW 348
F N I+ A R D +I+G D+ + RG +E++ +
Sbjct: 222 FQDTNNIQYAWVRLLAGDTGKVMIVG-------DDDQSIYGWRGAQVENIQRF 267
>gi|194899456|ref|XP_001979275.1| GG24642 [Drosophila erecta]
gi|190650978|gb|EDV48233.1| GG24642 [Drosophila erecta]
Length = 1450
Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 38/352 (10%), Positives = 84/352 (23%), Gaps = 46/352 (13%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ G+GKT + A L+ P ++ +A + + + A
Sbjct: 78 TLVVLPTGLGKTFIAAVLMYNFYRWYPKGKIVFMAPTRPLVSQQIHASQKIM-------- 129
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT--YSEERPDTFVGHHNTYGMAIIN 197
+ ++ L + + + D I+
Sbjct: 130 -PFPSADTVQLTGQLPRPKRAELWDSKRVFFATPQVVHSDMLTADGGSNFPFGSIKLIVV 188
Query: 198 DEASGTPDVINLG-ILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR 256
DEA + L RN N + S + + + I
Sbjct: 189 DEAHRAKGRYAYTQVTDCLMARNRNFRILALSATPGRTMEDVAAVCQN------LYISNL 242
Query: 257 TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
V + I R + + V ++ + P++ + I EP
Sbjct: 243 QVRWDTSIDVQPYIHRRTIRTIVVSLKERIKEPRERLLQII-----------EPYLRQLI 291
Query: 317 PLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
+ N+++ ++ + D + + Y
Sbjct: 292 EYDIFKGNKGNVSKNSLLFEQKSFIERSAQGQRHPDHNIITGNFAMCISMYHS------- 344
Query: 377 NNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFAS 428
+ +E G V+ E R + + +E
Sbjct: 345 -------LELMERHGLRVFVNNFDAAENGREKFVLARD---GDLRNLVEQVR 386
>gi|189204466|ref|XP_001938568.1| activating signal cointegrator 1 complex subunit 3 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985667|gb|EDU51155.1| activating signal cointegrator 1 complex subunit 3 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1810
Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W PG V+ +A + ++ V W
Sbjct: 968 HTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWGK 1022
Query: 134 LLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L + ++ + + + + + + R++
Sbjct: 1023 RLAGPMGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYVR-------QV 1075
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1076 SLVIIDEIHLLGGDRGPILEIIVSRMN 1102
>gi|317403372|gb|EFV83885.1| phage Terminase [Achromobacter xylosoxidans C54]
Length = 601
Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 55/210 (26%), Gaps = 20/210 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVIC 112
Q + + + + I G+G GK+ L L L M+ G +
Sbjct: 61 QAFIVGSIFGWLQDDGTR---RFRRAYIEQGKGNGKSPLAGGLGLLGMTADGEAGAQIYS 117
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
A + Q L+A+ K + P + +
Sbjct: 118 AAAKKDQA-GILFADAVKMVKQSPA-------------LAKRVSFSGGEGREFNMAHHAS 163
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-VINLGILGFLTERNANRFWIMTSNPR 231
+ DT ++ DE PD I + R A +++T++
Sbjct: 164 GSFFRPVSRDTSRTGSGPRPYFVLVDEVHELPDRKIIEMLERGFKFRRAPLLFMITNSGS 223
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGI 261
+ +E + +
Sbjct: 224 DRNSVCWEEHEHAVKVAAGHTEAVNDPTFV 253
>gi|229193797|ref|ZP_04320729.1| phage terminase, large subunit [Bacillus cereus ATCC 10876]
gi|228589680|gb|EEK47567.1| phage terminase, large subunit [Bacillus cereus ATCC 10876]
Length = 540
Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 49/389 (12%), Positives = 94/389 (24%), Gaps = 38/389 (9%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
EK P FS +WQ + + + GRG GK ++
Sbjct: 43 EKPAPYFSFSL-FAWQRFCNAFFYGVRYDDGRL---MFDRYLLLLGRGAGKNGYISYDCF 98
Query: 100 WLMSTRPGIS---VICLANSETQLKTTLWA-----EVSKWLSLL-----PNKHWFEMQSL 146
+++S GI + +A SE Q KT+ E K+ L +K +
Sbjct: 99 YMLSGHHGIKNYDIDIVATSEDQAKTSFEDVLNILETPKFTKKLKKVFYKSKKLIKHYKT 158
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHHNTYGMAIINDEA-- 200
S+ Y + + +G + I +
Sbjct: 159 KSKFEFNTSNARTKDGKRSGTVIFDELHEYEDYSNIKVFTSGLGKKKDPRIFYITTDGNV 218
Query: 201 -SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
G D + L + + E W++ R E
Sbjct: 219 RGGVLDDMKDEAQMVLNKELPHSTLFPFICK-----LDDEKEVHDESKWEKANPSYRYNE 273
Query: 260 GIDPSFHEGIIARYGLDSDV---TRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
+ +S + + + P
Sbjct: 274 NL-QHEMRKEYHDMKRNSALRIEFMTKRMNLPVEDTRKEVATYEERLATEQPFPENVQGI 332
Query: 317 PLIMGCDIAEEGGDNTV--VVLRRGPVI---EHLFDWSKTDLRTTNNKISGLVEKYRPDA 371
I D A+ +V + + G + L+ N I + +
Sbjct: 333 ECIGAVDFAQIRDFCSVGILFKKDGKRYWKQHTFMHHTAPKLQDINPDIIRIAIEKELLT 392
Query: 372 IIIDANNTGARTCDYLEMLGYHVYRVLGQ 400
++ D + + D+ M+
Sbjct: 393 VVYDKSISAEHVRDWFVMMNKEYRIKKVS 421
>gi|169598618|ref|XP_001792732.1| hypothetical protein SNOG_02115 [Phaeosphaeria nodorum SN15]
gi|160704433|gb|EAT90327.2| hypothetical protein SNOG_02115 [Phaeosphaeria nodorum SN15]
Length = 1992
Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + A L +W PG V+ +A + ++ V W
Sbjct: 1145 HTPANVLLGSPTGSGKT-VAAELAMWWAFREKPGSKVVYIAPMKALVRER----VQDWGK 1199
Query: 134 LLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L ++ + + + + + + R++
Sbjct: 1200 RLAGPMGLRLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRGYVR-------QV 1252
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1253 SLVIIDEIHLLGGDRGPILEIIVSRMN 1279
>gi|154294033|ref|XP_001547460.1| hypothetical protein BC1G_14050 [Botryotinia fuckeliana B05.10]
gi|150845095|gb|EDN20288.1| hypothetical protein BC1G_14050 [Botryotinia fuckeliana B05.10]
Length = 2018
Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 45/147 (30%), Gaps = 14/147 (9%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLS 133
+ + G GKT + L +W PG V+ +A + ++ V W +
Sbjct: 1159 HTPANVLLGSPTGSGKT-IACELAMWWAFREKPGSKVVYIAPMKALVRER----VKDWGA 1213
Query: 134 LLPNKHWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L + + ++ + + + + + + R+++
Sbjct: 1214 RLTRQMGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWTTRGYVR-------QV 1266
Query: 193 MAIINDEASGTPDVINLGILGFLTERN 219
+I DE + ++ N
Sbjct: 1267 SLVIIDEIHLLGGDRGPILEIIVSRMN 1293
>gi|317485973|ref|ZP_07944828.1| hypothetical protein HMPREF0179_02183 [Bilophila wadsworthia 3_1_6]
gi|316922746|gb|EFV43977.1| hypothetical protein HMPREF0179_02183 [Bilophila wadsworthia 3_1_6]
Length = 529
Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 9/232 (3%)
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANSETQLKTTLWAE 127
PE + AI+A RG K+T + + VLW + T ++ +A++ Q + L A
Sbjct: 59 PRMADAPEGVRLAIAAPRGEAKSTFVSLFFVLWAVLTGRKHYILIIADALEQAASLLGAV 118
Query: 128 VSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG 186
+ + + + + + + + P
Sbjct: 119 KDELEFNEALKRDFPGVGKGHVWNVGTVVTPGNVKIQALGAGKRMRGL---RHGPHRPDL 175
Query: 187 HHNTYGMAIINDEASGTPDVINLGILGFLTERNA---NRFWIMTSNPRRLSGKFYEIFNK 243
N + D + + + A + + K
Sbjct: 176 IVLDDLENDGNVDKPEQRDKLQSWLQKTVLNLGAADGSMDVVYVGTLLHYDSVLARTLRK 235
Query: 244 PLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDS 295
PL + F+ R + +D + E R + + +
Sbjct: 236 PLWKARTFRSILRWPDRMD-LWDEWESLLSSRGEAEARRFYRQHRAKMEAGA 286
>gi|192359585|ref|YP_001984104.1| putative restriction endonuclease [Cellvibrio japonicus Ueda107]
gi|190685750|gb|ACE83428.1| putative restriction endonuclease [Cellvibrio japonicus Ueda107]
Length = 895
Score = 39.1 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 42/168 (25%), Gaps = 19/168 (11%)
Query: 37 PWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
W + P G + Q H ++ N NPE+ + A+ G GKTT+ A
Sbjct: 5 IWLTEVAPQIGKNG----QRFL-----DHLADANANANPELIRLALKLATGAGKTTVMAM 55
Query: 97 LVLWL---MSTRPGIS-----VICLAN--SETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
L+ W RP + +A + L +M
Sbjct: 56 LIAWQTVNAVRRPNSKKFTRGFLIVAPGLTIKDRLRVLQPNDPDSYYASRELVPADMLED 115
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
++ L + + M
Sbjct: 116 LQKAKIVITNYHAFKLRERMEISKGGRLLLQGRTGEALNTLETEGQML 163
>gi|195391276|ref|XP_002054289.1| GJ22884 [Drosophila virilis]
gi|194152375|gb|EDW67809.1| GJ22884 [Drosophila virilis]
Length = 2179
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 42/140 (30%), Gaps = 9/140 (6%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + ++ +P V+ +A + +K + ++
Sbjct: 1353 VLLGAPTGSGKTIVAEIAIFRALNLQPKCKVVYIAPLKALVKERIADWQQRFERSSLGLK 1412
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
E+ + + + + + R++ + I+ DE
Sbjct: 1413 VVELTGDVTPDIQAIRESQL--IVTTPEKWDGISRSWQTREYV-------QHVALIVIDE 1463
Query: 200 ASGTPDVINLGILGFLTERN 219
+ I ++ N
Sbjct: 1464 IHLLGEDRGPVIEVIVSRTN 1483
>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
Length = 421
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 44/286 (15%), Positives = 76/286 (26%), Gaps = 43/286 (15%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
GFS P Q E + SA G GKT A L + P
Sbjct: 22 GFSRPTQVQAEAIPQALD------------GRDVLASAPTGTGKTAAFAIPALQYLLDFP 69
Query: 107 -----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
++ L + AE ++ L+ + F + +
Sbjct: 70 RRKAGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADILATTQD 127
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
+ +T R + F +I DEA D+ + L+
Sbjct: 128 IV-----VATPGRLLEYIDAERFD---CRAIEWLILDEADRMLDMGFGPTVDRLSTECRW 179
Query: 222 RF----WIMTSNPRRLSGKFYEIFNKP---------LDDWKRFQIDTRTVEGIDPSF-HE 267
R + T R + G ++ P + K Q R + +
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLK 239
Query: 268 GIIARYGLDSDVT--RVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
I+ S V E + + IP I+ + ++
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRR 285
>gi|159122282|gb|EDP47404.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus A1163]
Length = 2043
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 14/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + L +W PG V+ +A + ++ V W L
Sbjct: 1201 VLLGSPTGSGKT-VACELAMWWAFREKPGSKVVYIAPMKALVRER----VMDWGKRLAAP 1255
Query: 139 HWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ ++ + + + + + + R++ +I
Sbjct: 1256 MGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYVR-------KVSLVII 1308
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + ++ N
Sbjct: 1309 DEIHLLGGDRGPILEIIVSRMN 1330
>gi|70981929|ref|XP_746493.1| DEAD/DEAH box helicase [Aspergillus fumigatus Af293]
gi|66844116|gb|EAL84455.1| DEAD/DEAH box helicase, putative [Aspergillus fumigatus Af293]
Length = 2043
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 14/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + L +W PG V+ +A + ++ V W L
Sbjct: 1201 VLLGSPTGSGKT-VACELAMWWAFREKPGSKVVYIAPMKALVRER----VMDWGKRLAAP 1255
Query: 139 HWFE-MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ ++ + + + + + + R++ +I
Sbjct: 1256 MGLKLVELTGDNTPDTRTIRDADIIITTPEKWDGISRSWQTRDYVR-------KVSLVII 1308
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + ++ N
Sbjct: 1309 DEIHLLGGDRGPILEIIVSRMN 1330
>gi|288957066|ref|YP_003447407.1| type III restriction enzyme res subunit [Azospirillum sp. B510]
gi|288909374|dbj|BAI70863.1| type III restriction enzyme res subunit [Azospirillum sp. B510]
Length = 1011
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 16/118 (13%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL---MSTRPGIS-----VIC 112
+ H + NPE+ + A+ G GKTT+ A L+ W P +
Sbjct: 147 EIWQHIKRANQQANPELLRMALKLATGAGKTTVMAMLIAWQTVNAVRHPNAKSFSRGFLI 206
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+A + LLPN ++ + P +D+ + I + H
Sbjct: 207 VAP--------GITIRDRLRVLLPNDPESYYRNREIVPGDMLADIERAKIVITNYHAF 256
>gi|301092109|ref|XP_002896227.1| N-acetyltransferase 10 [Phytophthora infestans T30-4]
gi|262094857|gb|EEY52909.1| N-acetyltransferase 10 [Phytophthora infestans T30-4]
Length = 1102
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 11/151 (7%)
Query: 55 QLEFMEVVDAHC-LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
Q ++ A + A++AGRG GK+ + L ++
Sbjct: 254 QARTLDQAKAILTFVEAVSEKTLRSTVALTAGRGRGKSAAL-GMSLAGAVAYGYSNIFVT 312
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
A S LKT + V K L K + + + + V+ ++ + +
Sbjct: 313 APSPENLKTV-FEFVFKGFDALKYKEHLDYEIVQSTNPEFNHAVVRVNIFREHRQTIQYI 371
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ E+ + DEA+ P
Sbjct: 372 QPTHHEKLAQAE--------LVAIDEAAAIP 394
>gi|294659974|ref|XP_462429.2| DEHA2G20394p [Debaryomyces hansenii CBS767]
gi|199434374|emb|CAG90939.2| DEHA2G20394p [Debaryomyces hansenii]
Length = 1942
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 14/140 (10%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
+ + G GKT + A L +W PG V+ +A L E +++
Sbjct: 1141 VGSPTGSGKT-VVAELAIWHAFRDFPGTKVVYIAP-----MKALVRERVDDWRARISRN- 1193
Query: 141 FEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIINDE 199
D L + + + + + +I DE
Sbjct: 1194 -----TKHKLVELTGDSLPEAKDVRAADIIITTPEKFDGISRNWQTRKFVQQVSLVIMDE 1248
Query: 200 ASGTPDVINLGILGFLTERN 219
+ ++ N
Sbjct: 1249 IHLLASDRGPILEMIVSRMN 1268
>gi|326924726|ref|XP_003208576.1| PREDICTED: LOW QUALITY PROTEIN: u5 small nuclear ribonucleoprotein
200 kDa helicase-like [Meleagris gallopavo]
Length = 2079
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 34/135 (25%), Gaps = 14/135 (10%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL--WAEVSKWLSLLPN 137
+ A G GKT + +L ++ + + E + W E +
Sbjct: 1289 VFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVFMDWYEKFQERLNKKV 1348
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
S L + ++ + + + R + + + I
Sbjct: 1349 VLLTGETSTDLKLLGKGNIII-----STPEKWDILSRRWKQRKNV-------QNVNLFIV 1396
Query: 198 DEASGTPDVINLGIL 212
DE +
Sbjct: 1397 DEVHLIGGENGPVLE 1411
>gi|119491617|ref|ZP_01623489.1| type I restriction-modification system restriction subunit [Lyngbya
sp. PCC 8106]
gi|119453346|gb|EAW34510.1| type I restriction-modification system restriction subunit [Lyngbya
sp. PCC 8106]
Length = 994
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 31/208 (14%), Positives = 61/208 (29%), Gaps = 20/208 (9%)
Query: 15 LFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
D+ D + NF+ GT E PR Q + ++ + AH +
Sbjct: 243 WEDVFSPDSVLDLIGNFIHLAVE-DRNGTRREQLIFPRYHQRDTVKKLAAHAREYGTGQH 301
Query: 75 PEVFKGAISAGRGIGKTTLNAWLV--LWLMSTRPGISVI--CLANSETQLKTTLWAEVSK 130
+ A G GK+ AWL L + + + ++ ++ +
Sbjct: 302 YLIQHSA-----GSGKSNTIAWLAHRLAFLHNTENQRIFDSVIVITDRRVLDRQLQTTVR 356
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT 190
P S+ +SD L +L I S + +
Sbjct: 357 QFEQSP---------GSVVVIDKHSDQLVEALTIGSAIIVCTLQKFPVI-VKKVNQLTGR 406
Query: 191 YGMAIINDEASGTPDVINLGILGFLTER 218
+ I+++ S + + L +
Sbjct: 407 HFAIIVDEAHSSQSGEASKSLKEVLRAQ 434
>gi|4586977|dbj|BAA76559.1| mok13+ [Schizosaccharomyces pombe]
Length = 2371
Score = 39.1 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 44/423 (10%), Positives = 97/423 (22%), Gaps = 59/423 (13%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
+ R + T E++ + ++ ++ WG K + +P WQ+ F
Sbjct: 15 IPRLVFTAKYDERESLWNLNQNQSATDPLDY------WG-KWENHQYHPSPDDWQVPFYT 67
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
V+ + N ++ R G +I L +S L
Sbjct: 68 VILDKWKDGDPRNNEANNTIY--------------EYDIYETGFRNGGDIIGLKDSLDYL 113
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+ L + PW +D H+S + +
Sbjct: 114 EIMGIKVRRVMLLCSLTNKVIYIAGTPFLNQPWGADQYSPLDYTILDHHSGTIAQWRDTI 173
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
+ H +++ S D I + F
Sbjct: 174 EE----IHRRGFYLVLDLTISTLGD------------------LIGFRKYLNSTTPFSLF 211
Query: 241 FNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP-- 298
++ + D DP + +G D ++ G +
Sbjct: 212 EHEAVWKSNVIYPDWNFTNKYDPKC--ELPRFWGEDGAPVVIDYVGCYDSDFDQYGDTEA 269
Query: 299 ----LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL--RRGPVIEHLFDWSKTD 352
+ + D + ++ + G I+ +
Sbjct: 270 FGTHPDWERQLSKFASVQDRLREWRPSVSEKLKHFACMIIAMLDVDGFRIDKATQITVDF 329
Query: 353 LRTTNNKISGLVEKYRPDAIII--DANN---TGARTCDYLEMLGYHVYRVLGQ-KRAVDL 406
L + + + G + I + G+ +L +
Sbjct: 330 LASWAHSVRGCAATFNKKNFFIPGEVTGSSSYGSIYYGRGRQPDQRPPSILTSLNSSSLK 389
Query: 407 EFC 409
E
Sbjct: 390 ENY 392
>gi|325914238|ref|ZP_08176588.1| hypothetical protein XVE_0455 [Xanthomonas vesicatoria ATCC 35937]
gi|325539493|gb|EGD11139.1| hypothetical protein XVE_0455 [Xanthomonas vesicatoria ATCC 35937]
Length = 951
Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 24/182 (13%)
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL---MSTRPGIS-----VICLAN 115
H + N+ NP + + A+ G GKTT+ A L+ W P + +A
Sbjct: 69 DHLKKASNDANPGLMRLALKLATGAGKTTVMAMLIAWQTVNAVRHPQSKKFTRGFLLVAP 128
Query: 116 ---SETQLKTTLWAEVSKWL---SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG-IDSKH 168
+ +L+ L + + ++P ++ + +++ L +
Sbjct: 129 GLTIKDRLRVLLPNDADSYYASREIVPRDMLADLDKTKIIITNYHAFKLRERMELSKGGR 188
Query: 169 YSTMCRTYSEERPDTFVG---------HHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
RT SE G + INDEA F+ ++
Sbjct: 189 RLLQGRTGSELDTQETEGQMLQRVMPELMGLKNILAINDEAHHCYREKPASDDDFIDDKG 248
Query: 220 AN 221
Sbjct: 249 NP 250
>gi|325660662|ref|ZP_08149293.1| hypothetical protein HMPREF0490_00024 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325473071|gb|EGC76278.1| hypothetical protein HMPREF0490_00024 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 777
Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 48/180 (26%), Gaps = 16/180 (8%)
Query: 37 PWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNS---VNNPNPEVFKGAISAGRGIGKTTL 93
W +E + + + + E+ + + G GKT
Sbjct: 220 IWEVLSEKVEEKCGEFRERKDPLSKLRCDISERCKCYAERETEICRMIVPTG--GGKTIS 277
Query: 94 NAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL----- 148
+ + +A +T L +W ++ ++ E S +
Sbjct: 278 ALRFAIHYCKKHGKERIFYIAPF----RTILEQNCEEWKRIVGEEYVLEHHSDMIASFKT 333
Query: 149 --HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDV 206
A + + I + T+ +R D+ H II DE P
Sbjct: 334 EEEMAEYELRADKWDMPIIATTLVQFMNTFFSDRMDSVRRMHRLCNSVIIIDEVQSIPAE 393
>gi|209972883|ref|YP_002300330.1| gp2.11 [Bacillus phage SPO1]
gi|209871203|gb|ACI90959.1| gp2.11 [Bacillus phage SPO1]
Length = 547
Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R WQ+ +E + + R +G + + +W + T P ++ +
Sbjct: 45 RPWQIAILED--------------QHPDKVVRKSRQLGLSEMAVTEFIWFLDTHPNVNGM 90
Query: 112 CLANSETQLKTTLWAEVSKWLSLLP 136
+ Q++ ++ P
Sbjct: 91 YTFPRKEQMEDFSNTRIAPIFDESP 115
>gi|256374744|ref|YP_003098404.1| type III restriction protein res subunit [Actinosynnema mirum DSM
43827]
gi|255919047|gb|ACU34558.1| type III restriction protein res subunit [Actinosynnema mirum DSM
43827]
Length = 525
Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 29/239 (12%), Positives = 62/239 (25%), Gaps = 24/239 (10%)
Query: 17 DLMWSDEIKLSFSNFVLHFFPWGEKGTPL-----EGFSAPRSWQLEFMEVVDAHCLNSVN 71
DL W+ E + F+ TPL E Q + +
Sbjct: 84 DLTWTIEQRRELLEFLGFTIDRAPTRTPLFRQDAEPLYGLFPHQRRAAARIKELIYDGPR 143
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
+ G+GKT L+ + R V+ LA+ + E+ +
Sbjct: 144 RAVLHLPT-------GVGKTRTGMNLICDHLRDREPTLVVWLAHGQ---------ELLEQ 187
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH--N 189
+ W ++ + + + + + + H
Sbjct: 188 AAAEFEHAWSQLGNRPVSVVRMWGNAPTTLDDVADGVVILGLEKAVSAAKGSPEFLHTLA 247
Query: 190 TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
+ + DEA ++ LT R + + + + + D +
Sbjct: 248 SRSSLTVFDEAHQIIAPTFQRVVDALTIR-PDASLLGLTATPGRTWADIAQDERLSDFF 305
>gi|324499841|gb|ADY39942.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Ascaris suum]
Length = 2156
Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 13/77 (16%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
Q + V N I A G GKT + +L +P +
Sbjct: 1337 PIQTQVFRTVYEGNEN-----------VFIGAPHGSGKTVCAEFAILRHFDNKPDAKAVY 1385
Query: 113 LANSETQLKTTL--WAE 127
+ E + W E
Sbjct: 1386 VTPMEDMAEKVFADWQE 1402
>gi|288959320|ref|YP_003449661.1| hypothetical protein AZL_024790 [Azospirillum sp. B510]
gi|288911628|dbj|BAI73117.1| hypothetical protein AZL_024790 [Azospirillum sp. B510]
Length = 504
Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 16/125 (12%)
Query: 22 DEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGA 81
D SF+ FV + E TP + + N + A
Sbjct: 2 DREDDSFTGFVRGWNDMVELRTPAHHAR------------MAGWLERHMAGDNRRMLLMA 49
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
RG GK+TL WL+ P ++ LA + V + L P
Sbjct: 50 F---RGSGKSTLVGLFAAWLLRRDPNRRLLVLAADMRLAMK-MVRNVKRILERHPGCGDL 105
Query: 142 EMQSL 146
+ +
Sbjct: 106 KPPAR 110
>gi|288917812|ref|ZP_06412173.1| type III restriction protein res subunit [Frankia sp. EUN1f]
gi|288350740|gb|EFC84956.1| type III restriction protein res subunit [Frankia sp. EUN1f]
Length = 557
Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q E + V + + G+GKT + ++ +S ++
Sbjct: 143 RPYQSEAFQRVTDALDEHQ--------RALLVLATGLGKTVIGGEVIARHLSRHAAGRIL 194
Query: 112 CLANSE---TQLKTTLWAEVSK 130
+A+++ QL+ LW +SK
Sbjct: 195 VVAHTKELVEQLERALWFHISK 216
>gi|125552219|gb|EAY97928.1| hypothetical protein OsI_19844 [Oryza sativa Indica Group]
Length = 1367
Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 31/254 (12%), Positives = 61/254 (24%), Gaps = 38/254 (14%)
Query: 47 GFSAPRSWQLEFMEVVDAHCL-NSVNNPNPEVFKGAISAG----R--GIGKTTLNAWLVL 99
F P Q E E + + + + N K + G G GKT L +
Sbjct: 774 RFILPLLHQREAFEFMWTNLVGDIRLNEIKHGAKPDVVGGCVICHAPGTGKTRLAIVFIQ 833
Query: 100 WLMSTRPGISVICLANSETQLKTTLWA---EVSKW----------------------LSL 134
M P + +A + L+A E KW L
Sbjct: 834 TYMKVFPDCRPVIIAP-----RGMLFAWEQEFKKWNVNVPFHIMNTTDYSGKEDRDICRL 888
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+ +H E + + W + + +
Sbjct: 889 IKKEHRTEKLTRLVKLFSW-NRGHGVLGISYGLYMKLTSEKVGCTGENKVRTILLENPGL 947
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
++ DE + ++ + R + + + + Y I + +
Sbjct: 948 LVLDEGHTPRNERSVIWKTLGKVKTEKRIILSGTPFQNNFLELYNILCLVRPRFGEMFLT 1007
Query: 255 TRTVEGIDPSFHEG 268
V +
Sbjct: 1008 KTRVGRRHCVSKKQ 1021
>gi|255711806|ref|XP_002552186.1| KLTH0B09196p [Lachancea thermotolerans]
gi|238933564|emb|CAR21748.1| KLTH0B09196p [Lachancea thermotolerans]
Length = 1954
Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 12/141 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W PG ++ +A + ++ V+ W +
Sbjct: 1154 VFVGSPTGSGKT-VVAELAMWHAFKEYPGSKIVYIAPMKALVRER----VTDWRKRV--- 1205
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ + S + D+ T + + II D
Sbjct: 1206 --TPVTGDKVIELTGDSLPDPRDVK-DATIIITTPEKFDGISRNWQTRKFVQEVSLIIMD 1262
Query: 199 EASGTPDVINLGILGFLTERN 219
E + ++ N
Sbjct: 1263 EIHLLASDRGPILEMIVSRMN 1283
>gi|156847104|ref|XP_001646437.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156117114|gb|EDO18579.1| hypothetical protein Kpol_1048p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 1055
Score = 39.1 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 15/157 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
++AGRG GK+ + + ++ + S LKT L+ + K L +
Sbjct: 279 VTLTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSPENLKT-LFEFIFKAFDALGYQE 336
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + ++ + D + + ++ DE
Sbjct: 337 HIDYDIIQSTNPQFNKAIVRVDIKRDHRQTIQYIMPQDHQVLGQAE--------LVVIDE 388
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
A+ P I +LG F T N +G+
Sbjct: 389 AAAIPLPIVKKLLGSYL-----VFMASTINGYEGTGR 420
>gi|332703045|ref|ZP_08423133.1| hypothetical protein Desaf_1909 [Desulfovibrio africanus str.
Walvis Bay]
gi|332553194|gb|EGJ50238.1| hypothetical protein Desaf_1909 [Desulfovibrio africanus str.
Walvis Bay]
Length = 662
Score = 39.1 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 39/304 (12%), Positives = 76/304 (25%), Gaps = 39/304 (12%)
Query: 32 VLHFFPWGEKGTPLEGFSAP---RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGI 88
V+ F W L + P R WQ + + A + P + K A
Sbjct: 27 VVSTFDWARNN--LRIVTGPYKGRLWQPDVLPYAPAVMVA---WDAPWLRKLFFVAPSQS 81
Query: 89 GKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSL 148
GKTT+ + + R V + + ++ ++ K + P L
Sbjct: 82 GKTTVF-YACAFASLYRNPSPVALVMPDQEAVERAFEKKLVKHVEASPALRG------RL 134
Query: 149 HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
+ + + S +++ M ++++E + + +I
Sbjct: 135 GSSRYALQKTEIRFRDGGFMQGLWAGSESRISSESYE-------MLLVDEEDAYSDRIIV 187
Query: 209 LGILGFLTERNANRFWIMTSNPRR--LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFH 266
+T S R G F+ +
Sbjct: 188 GTAEERVTAYTHTHKIARFSKIRGGENEGTIDRDMRAQAQVLLHFEAVCPSCLTRQRMEF 247
Query: 267 EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN--REPCPDPYAPLIMGCDI 324
E I G + G+ L E A R D + +
Sbjct: 248 ERIRVPEGERDPG---RILGE----------KLAWYECANEGCRWKWSDHVRNKALALAL 294
Query: 325 AEEG 328
+
Sbjct: 295 EKSR 298
>gi|296159097|ref|ZP_06841924.1| Terminase [Burkholderia sp. Ch1-1]
gi|295890658|gb|EFG70449.1| Terminase [Burkholderia sp. Ch1-1]
Length = 567
Score = 39.1 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 60/228 (26%), Gaps = 21/228 (9%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
E +FV K WQ+ + V V+ +
Sbjct: 58 DIEAASRICSFVELLPHIKGKWARTRQRIELEPWQIFVLSTVFGWL--HVDTGLRRYRRA 115
Query: 81 AISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
R K+T + + L+L + PG V A + Q K ++ + P+
Sbjct: 116 YEEVARKNAKSTKSCGVALYLFAADGEPGAEVYSAATTRDQAK-IVFDDAKAMALREPD- 173
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+L +L S T +I++
Sbjct: 174 -----MCRTLGIEVLQHQMLVPDDASKFTPLSAEGSTLDGLNVHGG----------VIDE 218
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
+ + I R+ + W++T+ +G YE
Sbjct: 219 LHAHKTRAVFDVIDSATGARDQSLLWMITTAGTDRTGICYEQRTHVTK 266
>gi|271502378|ref|YP_003335404.1| DNA helicase II [Dickeya dadantii Ech586]
gi|270345933|gb|ACZ78698.1| DNA helicase II [Dickeya dadantii Ech586]
Length = 720
Score = 39.1 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 35/333 (10%), Positives = 87/333 (26%), Gaps = 39/333 (11%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGISVICL 113
+ ++ ++ ++V P + + AG G GKT + + WL++ P +
Sbjct: 5 DLLDSLNDKQRDAVAAPRSNML---VLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVT 61
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ + +H + + W + + H+
Sbjct: 62 FTNKAAAE---------------MRHRIDQLLGTSQGGMWIGTFHGLAHRLLRAHHLDAG 106
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + +A + + +
Sbjct: 107 LPQDFQILDSEDQLRLLKRLI----KALNLDEKQWPPRQAMWYINGKKDEGLRPQHIDSY 162
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + + ++ +Q +D + L+ +F +
Sbjct: 163 GNPVEQTWLRI---YQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRDRFNNILV 219
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFD----WS 349
D F N I+ A R D +I+G D+ + RG +E++ ++
Sbjct: 220 DEFQDTNRIQYAWIRLLAGDSAKVMIVG-------DDDQSIYGWRGAQVENIQHFLRDFN 272
Query: 350 KTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR 382
+I N
Sbjct: 273 DVTTIRLEQNYRSTANILNAANALIAHNGDRLG 305
>gi|166031069|ref|ZP_02233898.1| hypothetical protein DORFOR_00750 [Dorea formicigenerans ATCC
27755]
gi|166029336|gb|EDR48093.1| hypothetical protein DORFOR_00750 [Dorea formicigenerans ATCC
27755]
Length = 454
Score = 39.1 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 39/268 (14%), Positives = 78/268 (29%), Gaps = 20/268 (7%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
+V +++GR K++ A + + + P S + L +L+ T++ E+ + ++
Sbjct: 12 RKVKHIILTSGRAGTKSSYAAIRTDYQIVSDPHGSAVVLRKHHNKLRKTVYKEMIRGINR 71
Query: 135 L-PNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
L +K F + Y S E++P V
Sbjct: 72 LGISKKKFAITKSP--MEITYKKYGTTIYFSGSDGIDDTKGIIDEDKPIKLVVL--DELT 127
Query: 194 AIINDEASGTPDVINLGILGFLTERNAN--RFWIMTSNPRRLSGKFYEIFNKPLDDWKRF 251
+D G + I N++ + + + P+ + + K
Sbjct: 128 EFFDD---GEGEDELSNIEATFVRGNSSGFQMIYLYNPPKNPNAPINQWCKKMEKREDCI 184
Query: 252 QI--DTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN 307
I D R V + + + A D + R GQ D +
Sbjct: 185 HIHTDYRDVPVSWLGQALVDSAEAMKRADEKMYRWVWLGQAVGVDELIYYMFGD-----R 239
Query: 308 REPCPDPYAPLI-MGCDIAEEGGDNTVV 334
PDP + + T
Sbjct: 240 HRQKPDPNRRYDRIYIGGDYGQQNATTF 267
>gi|206600184|ref|YP_002241790.1| gp3 [Mycobacterium phage Ramsey]
gi|206287272|gb|ACI12615.1| gp3 [Mycobacterium phage Ramsey]
Length = 495
Score = 39.1 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 60/501 (11%), Positives = 126/501 (25%), Gaps = 45/501 (8%)
Query: 15 LFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
L D+ + S+ + E F WQ + + +
Sbjct: 14 LVDIARQCFVPDDISHTRYYELIAPELPGMGVEF---DRWQEDIWYAALGLREDGTLACD 70
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSL 134
+I+ R GKT ++ + +RPG V+ ++ + TL
Sbjct: 71 VMGVTLSIA--RQAGKTWGIMVGLIAICLSRPGTLVVWSSHHDRTSSETLTKIAGIVEKP 128
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
M + + S + R +SE + N A
Sbjct: 129 AIRPKMRPMHPVVQSDDNRGVHFANGSRILFGARAQGFGRGFSEVDIQVYDECQNLKESA 188
Query: 195 IINDEAS-GTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI 253
+ + A+ ++ +G + + RR + +P
Sbjct: 189 LTDMLAAMNVSEIGLAFFMGTPPRPQEVALGVHDAFKRRRDRALEQKKRRPFKGVYVEFA 248
Query: 254 DTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPC-- 311
+ + G R + V ++ +++ P ++ E
Sbjct: 249 PESPDDVVADIDAPGFWDRLAEANPSFGHRVGKSAIERLVENMSPEDVRREVFGIWDKTN 308
Query: 312 ----PDPYAPLI-MGCDIAEEGG-DNTVVVLRRGPVIEHLFDWSKTDL---------RTT 356
P + CD+ + G V R + WS D +
Sbjct: 309 EVSSVVPGDQWRSLCCDVDDLGDVSAFGVSATRSGWFWIVACWSGVDDGVHVEIALGTQS 368
Query: 357 NNKISGLVEKYRPDAIII--DANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRT 414
+ + Y I D+ + L+ L + + N
Sbjct: 369 EVEAVDFLRAYASRKTPIKHDSVGAAKALGEKLKQLK-----FKSSVYSSNESVAGN--- 420
Query: 415 ELHVKMADWLEFASLIN--HSGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGL 472
L V + ++ L + + L ++ P+ G + + A+S D +
Sbjct: 421 ALWVSL---VDQGRLTHGGQAELDVAVRGATRKDRPSGGWMMMPR-----AESFDIGPAI 472
Query: 473 MY--TFAENPPRSDMDFGRCP 491
G
Sbjct: 473 AMSAAVYAAVTSKPRSSGGAS 493
>gi|332184062|gb|AEE26316.1| Terminase large subunit [Francisella cf. novicida 3523]
Length = 602
Score = 39.1 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 50/414 (12%), Positives = 112/414 (27%), Gaps = 40/414 (9%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
+++ + T + ++L W++E F P G P + P +Q +
Sbjct: 9 LNKSINTYLKPVKELDISSWANE---------HVFLPPGTSAKPGRWKTIP--YQQGVFD 57
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
++ P+V K ++ G +GKT L + + + +P ++ SE+ L
Sbjct: 58 AIED----------PKVSKISLEWGAQLGKTALLNNTIGYYIEHKPESQIMM-QPSESDL 106
Query: 121 KTTLWAEVSKWLSLLP------NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST-MC 173
KT L + + + K + + L +
Sbjct: 107 KTWLETKFNPMVDYSKSVQEKLAKPRGRDGVNNQKMKKYKGGFLMFAWAGSPNTQRGRSA 166
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D + + + ++ A+ L + T + + ++ R
Sbjct: 167 PKIYCDEVDGYERSPEGHPVNLVWQRAATFGRKRKLILTSTPTIKGNSFIDDSFNSGDRR 226
Query: 234 SG--KFYEIFNKPLDDWKRFQIDTRT----VEGIDPSFHEGIIARYGLDSDVT---RVEV 284
+ W+ Q + F + A ++ + E
Sbjct: 227 RYYIPCPHCGHYQTLKWQNVQWQKDEKGIHLPYTAMYFCDECGAGINDGEKISMLRKGEW 286
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV-VVLRRGPVIE 343
+ P SF + + + D+ + G ++
Sbjct: 287 RAEMPFTGHASFHLSELYSPFRKFSDIVESFLEKKATRDLKSFVNVSLAETWEEEGEHVD 346
Query: 344 -HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYR 396
+ DL L I+ G + +L YH
Sbjct: 347 PESLEARVEDLDVLPENCFFLTAGIDVQIDRIEVQTIGWGVGEESHVLDYHFIY 400
>gi|227875047|ref|ZP_03993192.1| phage terminase [Mobiluncus mulieris ATCC 35243]
gi|304390291|ref|ZP_07372244.1| phage terminase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|306817334|ref|ZP_07451079.1| phage terminase [Mobiluncus mulieris ATCC 35239]
gi|227844325|gb|EEJ54489.1| phage terminase [Mobiluncus mulieris ATCC 35243]
gi|304326047|gb|EFL93292.1| phage terminase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|304649775|gb|EFM47055.1| phage terminase [Mobiluncus mulieris ATCC 35239]
Length = 534
Score = 39.1 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 35/297 (11%), Positives = 79/297 (26%), Gaps = 28/297 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + +GK+ L A + L L V
Sbjct: 50 DWQEQIIRDLFGTVKEDGYRQFTTA---YVEIPKKMGKSELAAAIALLLTCGDGEERAEV 106
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q + ++ + + + P ++ L+ Y + ++ YS
Sbjct: 107 YGCAADRQQA-SIVFEVAADMIRMSPA-LSKRVKILASQKRIIYKPTNSFYQVLSAEAYS 164
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
S F H A+ + G+ D + +T + I
Sbjct: 165 KHGFNIS---GVVFDELHTQPNRALFDVMTKGSGDARTQPLYFLITTAGTDTHSICYEQH 221
Query: 231 RRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVEGIDPSF-HEGIIA------R 272
++ + P DDW + + + + E + +
Sbjct: 222 QKAQDILDGKKHDPTFYPVIYGAAQDDDWTDEDVWHKANPSLGITVPIEKVRQACTSAKQ 281
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + R Q+ +Q + + + + G D+A
Sbjct: 282 NPAEENTFRQLRLNQWVKQSVRWMPMHIWNQNSAPVDLSDLEGRVCYGGLDLASTTD 338
>gi|150007526|ref|YP_001302269.1| putative phage large subunit terminase [Parabacteroides distasonis
ATCC 8503]
gi|149935950|gb|ABR42647.1| putative phage large subunit terminase [Parabacteroides distasonis
ATCC 8503]
Length = 422
Score = 39.1 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 40/360 (11%), Positives = 103/360 (28%), Gaps = 43/360 (11%)
Query: 80 GAISAGRGIGKTTLNAWLV--LWLMSTRPGI---SVICLANSETQLKTTLWAEVSKWLSL 134
I+ GRG GK+ + + L T ++ + ++ E+ +
Sbjct: 20 ILITGGRGSGKSFNASTFIERLTFELTPVEKIVHQILYTRYTMVSAGMSIIPEMME---- 75
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+++ + + S+ +T S +
Sbjct: 76 -------KIELDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGI-TTF 127
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------- 247
+ ++ T + I+ + ++ I+ NP + Y+ + +
Sbjct: 128 VCDEAEEWTNEEEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIENTHKLVEIDGV 187
Query: 248 -------WKRFQIDTR---TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
I T +E + P F + + + + V G++ +
Sbjct: 188 QVQISTHPNVLHIHTTYLDNLENLSPEFLKEVEDMKVNNPEKYAHVVIGRWADVAEGAVF 247
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTN 357
I + + +G D + + +L + ++
Sbjct: 248 KKWGIVDEFPAWAK-----KVAIGQDFGYTHDPSASIRCGIVDNALYLDEIDYRTGLLSS 302
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELH 417
+ I L RP + + A++ R + G +Y V +V+ + + E++
Sbjct: 303 DIIKSL----RPWGLKVIADSADPRLIQEIHNGGVKIYAVEKGAGSVNAGLDKMQGMEMY 358
>gi|282721431|gb|ADA83879.1| gp53 [Mycobacterium phage Fang]
Length = 598
Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q E +E +++H V + + G GK+T+ + R V+
Sbjct: 41 RPYQREAVEAIESHWSQG-------VTRVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 91
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+A+ +L + + + +P H +++ + +L + +
Sbjct: 92 MVAH-RGELIDQMAGTIFEVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRREAV 150
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
R G + E G D + G + +
Sbjct: 151 GFRRRILWDEVHHAGAEGFHTTF---TELGGYTDALFAGFTATMRRDDK 196
>gi|258615838|ref|ZP_05713608.1| putative phage terminase, large subunit [Enterococcus faecium DO]
Length = 546
Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 49/448 (10%), Positives = 119/448 (26%), Gaps = 46/448 (10%)
Query: 12 EQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLN 68
EQ L + + + E + P W+ +
Sbjct: 9 EQLLLKNYLEERVFTR--EDIYFDKQMVEDSINIPAQYFPFELIPWEKFLQCFIYGVRWK 66
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---VICLANSETQLKTTLW 125
+ + GRG GKT +W +L++ + GI + AN+E+Q KT+ +
Sbjct: 67 K--DKTLVFNRYLSLMGRGNGKTGFASWNNFFLLTAKHGIKNYDIDIYANNESQAKTS-F 123
Query: 126 AEVSKWLSLLPN---------KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+V K + P+ K + + + ++ +
Sbjct: 124 DDVFKVIKDHPDLDKKVFKATKEVIQNIATNSKLRYNTANARTKDGKRPGANRFDEIHEN 183
Query: 177 SEER----PDTFVGHHNTYGMAIINDEAS-------GTPDVINLGILGFL-TERNANRFW 224
+ + G Y + + + G L +++ F
Sbjct: 184 EDYSMINVATSGGGKIRDYREFYDTTNGHVRGGPLDDIIEESKMILSGELGIDKDGAEFS 243
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ RL + ++ + + GL +
Sbjct: 244 SLFPFICRLDNDNEVDDPDMWEKACPTINYNADLKRKMFQEYSQMQRNAGL-RLTFMTKR 302
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEH 344
+ + + + + +E P+ +I D A+ +V +L +
Sbjct: 303 MNRPMEDTRFAVASYDDVLHTKEKEF-PEKMDEVIGTVDFADRRDFASVGLLGK------ 355
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
+ K T + I + + + + + ++G +
Sbjct: 356 ---YDKDVYFTQHTFIHESALRLQNIKREVIDISIDQGKSQIVHGKNIEADYIVGWFLEM 412
Query: 405 DLEFCRNRRTE-LHVK--MADWLEFASL 429
++ + ++ + LE A
Sbjct: 413 SNKYYIKKIAMDMYRAKILKPALEEAGF 440
>gi|182416155|ref|YP_001821221.1| DEAD/DEAH box helicase domain-containing protein [Opitutus terrae
PB90-1]
gi|177843369|gb|ACB77621.1| DEAD/DEAH box helicase domain protein [Opitutus terrae PB90-1]
Length = 708
Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 37/345 (10%), Positives = 77/345 (22%), Gaps = 27/345 (7%)
Query: 45 LEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST 104
L+ + P WQ + + A G GKT + W+ +
Sbjct: 9 LQKLTLPDRWQALALA------------GLRAGRDVIVDAPTGAGKTYVFER---WVEQS 53
Query: 105 RPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
G + + S+ + + + +
Sbjct: 54 SSGKRALFTVPTRALANDKYAEWRSRGWRVGIMTGDLCVDP----------EAPVIVATL 103
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGT-PDVINLGILGFLTERNANRF 223
++ S + + + P + ++ DE G L
Sbjct: 104 EAVQGSVVGARAAAQGPRSRAKDRGEPFHLLVIDEYHWIADPHRGNHYEGVLLSVPPELQ 163
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVE 283
++ S G N+ + + Q R V+ + + + +
Sbjct: 164 LLLLSGAVANPGDVAAWLNRLGRNAEVVQHRERPVQLEEVDVDDLVHGLPRVIEGYWSKR 223
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
V G + + +A PL + E L +
Sbjct: 224 VAGALREGLGPVLVFAPHRRDAERLARQFARELPLADPLTLTPEQEQLCGPTLSKMLRAR 283
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ S I L K ++ A L
Sbjct: 284 VAYHHSGLSYAQRAGLIEPLA-KAGQLRAVVATLGLSAGINFSLR 327
>gi|254483191|ref|ZP_05096424.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214036562|gb|EEB77236.1| UvrD/REP helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 717
Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 39/301 (12%), Positives = 80/301 (26%), Gaps = 33/301 (10%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRP--GISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ AG G GKT + + WL+ S++ + + K ++
Sbjct: 27 VLAGAGSGKTRVLVHRIAWLIRAEEFSPWSILAVTFTNKAAKEM--------------RN 72
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND- 198
E W + + H+ + + D+ + +
Sbjct: 73 RIEEMLQIPSHGMWVGTFHGLAHRLLKAHWKEAGLPQNFQILDSDDQLRLVKRVCREMEL 132
Query: 199 EASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTV 258
+ S P + + + I + L ++ ++
Sbjct: 133 DESRWPPKQAMWYINSQKDEGLRSQHIDAPHGD-------LYAQTMLQVYRAYEAACDRT 185
Query: 259 EGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPL 318
+D + L S G+F Q +D F N I+ A R
Sbjct: 186 GMVDFAELLLRAHELWLKSPEVLAHYQGRFRQILVDEFQDTNTIQYAWLR--VLAGKDIP 243
Query: 319 IMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN 378
++ D+ + RG IE++ + D + I+ AN
Sbjct: 244 VIAVG-----DDDQSIYGWRGAKIENIQRFG--DDFKGTRTVRLEQNYRSTQTILQAANG 296
Query: 379 T 379
Sbjct: 297 V 297
>gi|206600344|ref|YP_002241364.1| gp54 [Mycobacterium phage Chah]
gi|206287432|gb|ACI12774.1| gp54 [Mycobacterium phage Chah]
gi|282721535|gb|ADA83982.1| gp53 [Mycobacterium phage Scoot17C]
Length = 598
Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q E +E +++H V + + G GK+T+ + R V+
Sbjct: 41 RPYQREAVEAIESHWSQG-------VTRVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 91
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+A+ +L + + + +P H +++ + +L + +
Sbjct: 92 MVAH-RGELIDQMAGTIFEVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRREAV 150
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
R G + E G D + G + +
Sbjct: 151 GFRRRILWDEVHHAGAEGFHTTF---TELGGYTDALFAGFTATMRRDDK 196
>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
Length = 416
Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 44/286 (15%), Positives = 76/286 (26%), Gaps = 43/286 (15%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
GFS P Q E + SA G GKT A L + P
Sbjct: 22 GFSRPTQVQAEAIPQALD------------GRDVLASAPTGTGKTAAFAIPALQYLLDFP 69
Query: 107 -----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
++ L + AE ++ L+ + F + +
Sbjct: 70 RRKPGPARILILTPTRELAMQV--AEQAQALAKNTRLNIFTITGGVQYQEHADILATTQD 127
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
+ +T R + F +I DEA D+ + L+
Sbjct: 128 IV-----VATPGRLLEYIDAERFD---CRAIEWLILDEADRMLDMGFGPTVDRLSTECRW 179
Query: 222 RF----WIMTSNPRRLSGKFYEIFNKP---------LDDWKRFQIDTRTVEGIDPSF-HE 267
R + T R + G ++ P + K Q R + +
Sbjct: 180 RKQTLLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLK 239
Query: 268 GIIARYGLDSDVT--RVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
I+ S V E + + IP I+ + ++
Sbjct: 240 KILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRR 285
>gi|227498391|ref|ZP_03928541.1| type III restriction system protein res subunit [Acidaminococcus
sp. D21]
gi|226903853|gb|EEH89771.1| type III restriction system protein res subunit [Acidaminococcus
sp. D21]
Length = 1063
Score = 38.7 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 40/246 (16%), Positives = 68/246 (27%), Gaps = 38/246 (15%)
Query: 3 RELPTNPETEQKLFDLMWSDEIKLSFSN----FVLHFFPWGEKGTPLEGFSA-------P 51
+++P E FD W + FS + EG + P
Sbjct: 267 QDMPLVMEKIHTTFDTYWHSDEFQDFSEKDRPHLEDAIDAERGRGKKEGSALSYAFRIRP 326
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
+Q + ++ + A + + A G GKT + A
Sbjct: 327 YPYQEQILDALQAERQ------IHHRTRNLVVAATGTGKTAIAA---------FDYARFA 371
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
N ET+L E SL + L + + + H
Sbjct: 372 KNRNKETRLLFVAHREEILTQSLSAFR-------QVLQDPGFGELSVGNFKAKRADHLFI 424
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
+T+ +R + + Y II DE L+ +T+ P
Sbjct: 425 SIQTFQHQRL--WEKLDSHYYDMIIVDEFHH---AAAPSYQKLLSYFKPRILLGLTATPE 479
Query: 232 RLSGKF 237
R+ GK
Sbjct: 480 RMDGKD 485
>gi|302548755|ref|ZP_07301097.1| putative terminase, large subunit [Streptomyces hygroscopicus ATCC
53653]
gi|302466373|gb|EFL29466.1| putative terminase, large subunit [Streptomyces himastatinicus ATCC
53653]
Length = 528
Score = 38.7 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 62/485 (12%), Positives = 115/485 (23%), Gaps = 82/485 (16%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISV 110
R Q ++++D +V GK+ + W LW + P V
Sbjct: 71 REIQAPHLDLIDQAFRRIAAGERLQVMLTMPP---RHGKSQRASRWGPLWYLRRHPTRRV 127
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ + +W+ ++ +L + P L
Sbjct: 128 MIASYGADLADDH-----GRWIR---DQLKEYSDTLGIRLNPASHAANRFDLEQPRGSSV 179
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD-----------VINLGILGFLTERN 219
+ + + II+D G D +
Sbjct: 180 RGGMVTAGVGGGLTGK---GFDLGIIDDPFKGNDDSGSPAQRDRVYDWYRSVFYTRRAPG 236
Query: 220 ANRFWIMT-SNPRRLSGKFYEIFNKPLDDWKRF----QIDTRTVE------------GID 262
A+ I T + LSG+ + W + D+ D
Sbjct: 237 ASIILINTRWHEDDLSGRLLQ---SEPHRWIQIDLPAIADSPDDPLGRHIGQALWPSQYD 293
Query: 263 PSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGC 322
+ G + + P+ I + P +
Sbjct: 294 EADLADTRETLGE--RIWYAMYQQK-PRPLEGGVWQWAWISGNRLKPEAWPGIDPTRVVV 350
Query: 323 DIAEEGGDN---------TVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAII 373
+ GGD+ R G + T ++ L + DAII
Sbjct: 351 AVDHAGGDSLRNDEVGLCCAARDRNGDLYILDDRSRTMGADTWGTEVCKLAIDRQADAII 410
Query: 374 IDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHS 433
++ N G + + + A D E + L + + +
Sbjct: 411 VENNFGG--------DMARQIVTQGWNELASDGET----KGMLMPSIIEVHAKQGKRLRA 458
Query: 434 GLIQNLKSLKSFI-----VPNTGELA--IESKRVKGAKSTDYSDGLMYTFAENPPRSDMD 486
I L V G++ I G S D D ++ E +
Sbjct: 459 EPIAQLYKQARVHHVGEFVELEGQMVTWIP-----GMDSPDRMDAAVHALTELANPAAAA 513
Query: 487 FGRCP 491
G P
Sbjct: 514 TGSKP 518
>gi|254581536|ref|XP_002496753.1| ZYRO0D07348p [Zygosaccharomyces rouxii]
gi|238939645|emb|CAR27820.1| ZYRO0D07348p [Zygosaccharomyces rouxii]
Length = 1960
Score = 38.7 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 14/142 (9%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W PG ++ +A + ++ V W
Sbjct: 1158 VFVGSPTGSGKT-VIAELAMWHAFRDFPGKKIVYIAPMKALVRER----VDDWRKK---- 1208
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIIN 197
+ + S + + + +I
Sbjct: 1209 -ITPVTGDRVVELTGDSLPDPRDVR--DSTIVITTPEKFDGISRNWQTRRFVQDVSLVIM 1265
Query: 198 DEASGTPDVINLGILGFLTERN 219
DE + ++ N
Sbjct: 1266 DEIHLLASDRGPILEMIVSRMN 1287
>gi|218234096|ref|YP_002367330.1| putative phage terminase, large subunit [Bacillus cereus B4264]
gi|218162053|gb|ACK62045.1| putative phage terminase, large subunit [Bacillus cereus B4264]
Length = 564
Score = 38.7 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 32/331 (9%), Positives = 77/331 (23%), Gaps = 22/331 (6%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTRPGIS 109
P S Q+ + + K GR K+ +L M+ +S
Sbjct: 76 PHSIQIFVFSNIYGWVHRNTG--LRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMS 133
Query: 110 VICLANSETQLKTTLWAEVSKWLSLL--------PNKHWFEMQSLSLHPAPWYSDVLHCS 161
+ + ++T+ +W E+ ++ E + D
Sbjct: 134 EVYIGATKTEQSKIVWNEIKAQMNGCEDLKGKFNIAYGKIEHLKTDSFISALSKDAGKSG 193
Query: 162 LGIDS-----KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL---G 213
G++ Y + + + G M II
Sbjct: 194 DGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVS 253
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD-DWKRFQIDTRTVEGIDPSFHEGIIAR 272
+ + N K EI N + + +
Sbjct: 254 KILDPNIEIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGRTFLKGELQSALDV 313
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDN 331
+ + ++ + ++ + ++ E +G D++ +
Sbjct: 314 PEKMRN-YLTKNMNRWVDMKENGYMDMQKWKDCKETVELSELKGLECTVGVDLSAKIDLT 372
Query: 332 TVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
++ + + S T K
Sbjct: 373 SISFEFKKDDKYIVISHSFMPEDTLAEKRKT 403
>gi|328854149|gb|EGG03283.1| hypothetical protein MELLADRAFT_49560 [Melampsora larici-populina
98AG31]
Length = 1103
Score = 38.7 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 15/150 (10%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q + + S A++A RG GK+ L + ++ +
Sbjct: 270 QAKALME-----FTSSITEKTLSSTVALTAARGRGKSAAL-GLAITAAIAHSYSNIFVTS 323
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
S LKT + + K L + + + W++ V+ + +
Sbjct: 324 PSPENLKTV-FEFIFKGLDAIGYEEHLDYDIHQSTNPEWHNCVVRIDIFRQHRQTIQYIE 382
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTP 204
+ ++ DEA+ P
Sbjct: 383 PQDYKVLGQAE--------LVVIDEAAAIP 404
>gi|69244671|ref|ZP_00602935.1| Phage Terminase [Enterococcus faecium DO]
gi|260562289|ref|ZP_05832803.1| phage terminase [Enterococcus faecium C68]
gi|293560414|ref|ZP_06676906.1| phage terminase, large subunit, putative [Enterococcus faecium
E1162]
gi|294616022|ref|ZP_06695846.1| putative phage terminase, large subunit [Enterococcus faecium
E1636]
gi|314940341|ref|ZP_07847505.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
gi|314942080|ref|ZP_07848937.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
gi|314949457|ref|ZP_07852795.1| conserved hypothetical protein [Enterococcus faecium TX0082]
gi|314953605|ref|ZP_07856502.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
gi|314997916|ref|ZP_07862816.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
gi|68196262|gb|EAN10691.1| Phage Terminase [Enterococcus faecium DO]
gi|260073213|gb|EEW61554.1| phage terminase [Enterococcus faecium C68]
gi|291591102|gb|EFF22787.1| putative phage terminase, large subunit [Enterococcus faecium
E1636]
gi|291605562|gb|EFF35004.1| phage terminase, large subunit, putative [Enterococcus faecium
E1162]
gi|313588079|gb|EFR66924.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
gi|313594377|gb|EFR73222.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
gi|313599145|gb|EFR77990.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
gi|313640460|gb|EFS05040.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
gi|313644155|gb|EFS08735.1| conserved hypothetical protein [Enterococcus faecium TX0082]
Length = 564
Score = 38.7 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 49/448 (10%), Positives = 119/448 (26%), Gaps = 46/448 (10%)
Query: 12 EQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLN 68
EQ L + + + E + P W+ +
Sbjct: 27 EQLLLKNYLEERVFTR--EDIYFDKQMVEDSINIPAQYFPFELIPWEKFLQCFIYGVRWK 84
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---VICLANSETQLKTTLW 125
+ + GRG GKT +W +L++ + GI + AN+E+Q KT+ +
Sbjct: 85 K--DKTLVFNRYLSLMGRGNGKTGFASWNNFFLLTAKHGIKNYDIDIYANNESQAKTS-F 141
Query: 126 AEVSKWLSLLPN---------KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+V K + P+ K + + + ++ +
Sbjct: 142 DDVFKVIKDHPDLDKKVFKATKEVIQNIATNSKLRYNTANARTKDGKRPGANRFDEIHEN 201
Query: 177 SEER----PDTFVGHHNTYGMAIINDEAS-------GTPDVINLGILGFL-TERNANRFW 224
+ + G Y + + + G L +++ F
Sbjct: 202 EDYSMINVATSGGGKIRDYREFYDTTNGHVRGGPLDDIIEESKMILSGELGIDKDGAEFS 261
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ RL + ++ + + GL +
Sbjct: 262 SLFPFICRLDNDNEVDDPDMWEKACPTINYNADLKRKMFQEYSQMQRNAGL-RLTFMTKR 320
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEH 344
+ + + + + +E P+ +I D A+ +V +L +
Sbjct: 321 MNRPMEDTRFAVASYDDVLHTKEKEF-PEKMDEVIGTVDFADRRDFASVGLLGK------ 373
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
+ K T + I + + + + + ++G +
Sbjct: 374 ---YDKDVYFTQHTFIHESALRLQNIKREVIDISIDQGKSQIVHGKNIEADYIVGWFLEM 430
Query: 405 DLEFCRNRRTE-LHVK--MADWLEFASL 429
++ + ++ + LE A
Sbjct: 431 SNKYYIKKIAMDMYRAKILKPALEEAGF 458
>gi|240168278|ref|ZP_04746937.1| short chain dehydrogenase [Mycobacterium kansasii ATCC 12478]
Length = 594
Score = 38.7 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 42/355 (11%), Positives = 89/355 (25%), Gaps = 36/355 (10%)
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGI--SVI----CLANSETQLKTTLW 125
+ + + G G + +W TRPG V S+ QL +W
Sbjct: 93 DQLTPGRRVHVM-GHDWG------SVGIWEYLTRPGAGDRVASFTSVSGPSQEQLVDYVW 145
Query: 126 AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+ + + A + V+ + + + + R + P
Sbjct: 146 GGLRRPWRPRRFLRSLAQALRLSYMALFSVPVVAPLILRVALSLAAVRRNMVDNIP-ADQ 204
Query: 186 GHHNTYGMAIINDEASGTPDVINLGI-----LGFLTERNANRFWIMTSNPRRLSGKFYEI 240
HH+ + P +T I+ + + Y+
Sbjct: 205 IHHSDNLPSDAARSVKTYPANYFRAFSRQRRSRGITVIGVPVQLIVNTQDPYVRPYGYDE 264
Query: 241 FNK-----PLDDWKRFQIDTRTVEGIDP---SFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
+ D K + + + + R +V G+ +
Sbjct: 265 TARWVPRLWRRDIKAGHFSPMSHPQVMAAAVHDIADFVEGNPPSRALLRAQV-GRPRKHF 323
Query: 293 IDSFIPLNIIEEALNREPCP----DPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW 348
D + + + RE + +I D A + R G + H +
Sbjct: 324 GDILVAVTGAGSGIGRETALAFAREGAEVVISDIDEATVKDTAAEIAARGG--VAHPYVL 381
Query: 349 SKTDLRTTNNKISGLVEKYRPDAIIIDANNTGAR--TCDYLEMLGYHVYRVLGQK 401
+D + ++ I+++ G D V V
Sbjct: 382 DVSDAEAVEAFAEQVSTRHGVPDIVVNNAGIGQAGRFLDTPAEQFDRVLAVNLGG 436
>gi|328772256|gb|EGF82294.1| hypothetical protein BATDEDRAFT_34342 [Batrachochytrium
dendrobatidis JAM81]
Length = 741
Score = 38.7 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 31/262 (11%), Positives = 66/262 (25%), Gaps = 29/262 (11%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQ-----L 56
S E T+ E L + + + + E S+Q
Sbjct: 138 SDEEKTSDNDE-ALVNPYFDINEPEDIVKDKSKAEFFDLESDKPEHREITESFQSLQLSR 196
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGR--------GIGKTTLNAWLVLWLMSTRPG- 107
++ + A + A+ GR G GKT ++ + RP
Sbjct: 197 PVLKSIAALGYVRPTDIQARAIPLALQ-GRDICGSAVTGSGKTAAFIIPIVERLLFRPKN 255
Query: 108 ---ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGI 164
V+ L + + S+ + F S L + L +
Sbjct: 256 DATTRVLILVPTRE--------LGVQCQSVAISISKFTDISTCLCVGGLPTKTQEAELRL 307
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL--TERNANR 222
+ ++ + + +I++ D + + + T R
Sbjct: 308 RPDIIIATPGRLIDHIHNSPSFFLDAIDILVIDEADRILDDGFDAELNEIIKHTPRTRQT 367
Query: 223 FWIMTSNPRRLSGKFYEIFNKP 244
+ + N+P
Sbjct: 368 MLFSATMTDNVDDLIKLSLNRP 389
>gi|302520885|ref|ZP_07273227.1| terminase [Streptomyces sp. SPB78]
gi|302429780|gb|EFL01596.1| terminase [Streptomyces sp. SPB78]
Length = 546
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 39/280 (13%), Positives = 68/280 (24%), Gaps = 40/280 (14%)
Query: 9 PETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQL-EFMEVVDAHCL 67
E FD+ + + +F WG L WQ + +
Sbjct: 22 DEQLGAWFDIEAASRAVRAIESFKHTKGRWGGTALKL------DPWQKLWVILPLFGWLF 75
Query: 68 NSVNNPNP-EVFKGA-ISAGRGIGKTTLNAWLVLWLMSTRP--GISVICLANSETQLKTT 123
P V + A + R GK+TL++ + L L+ G V A S Q K
Sbjct: 76 WDDEVDAPVRVIRTAWVEVPRKAGKSTLSSGISLTLLLADREIGAEVYSAAGSLDQAKRV 135
Query: 124 LWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDT 183
+ +++ D +L + + E
Sbjct: 136 F--------------DDAKRMAVTSRAVRGRVDARAAALLVPRTGGVLRALSKIAETA-- 179
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR-RLSGKFYEIFN 242
H + DE + + T + + G Y+ +
Sbjct: 180 ----HGLNVSGGVIDEVHVHKKRDLVDAIETGTGARTQPLIVFITTADEGDEGTIYDEKH 235
Query: 243 KPL--------DDWKRFQIDTRTVEGIDPSFHEGIIARYG 274
+D F + G DP
Sbjct: 236 TYTERCAEHVVEDPSHFGVVWAAEPGDDPFDEATWRKANP 275
>gi|157737907|ref|YP_001490591.1| phage uncharacterized protein [Arcobacter butzleri RM4018]
gi|157699761|gb|ABV67921.1| phage uncharacterized protein [Arcobacter butzleri RM4018]
Length = 573
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 13/164 (7%)
Query: 22 DEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGA 81
++ K F F +FP LEG S + + ++ +++ P K A
Sbjct: 69 EKQKSDFHYFRRTYFP---HYYSLEGKS-------KLQDELETIYYKIIDDLKPMGLKFA 118
Query: 82 ISAGRGIGKTTLNAWLV-LWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHW 140
I+A RG GK+T + +W + + +++ +T + A ++ K
Sbjct: 119 IAAPRGFGKSTDVSIAFPIWCIVNNYKHFITLFSDAIELAETLVEAIKAELEENERLKQD 178
Query: 141 FE--MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
F + + + + RPD
Sbjct: 179 FSNACGIGKVWKIGEIVTNNNIKVKAYGSGKRVRGVKHGTFRPD 222
>gi|145335142|ref|NP_172040.2| chr31 (chromatin remodeling 31); ATP binding / DNA binding /
helicase/ nucleic acid binding [Arabidopsis thaliana]
gi|332189724|gb|AEE27845.1| chromatin remodeling 31 [Arabidopsis thaliana]
Length = 1410
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
G GKT L + + P + +A + L WAE K ++ H
Sbjct: 866 GTGKTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNL 917
>gi|110740804|dbj|BAE98499.1| hypothetical protein [Arabidopsis thaliana]
Length = 1410
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
G GKT L + + P + +A + L WAE K ++ H
Sbjct: 866 GTGKTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNL 917
>gi|8778726|gb|AAF79734.1|AC005106_15 T25N20.14 [Arabidopsis thaliana]
Length = 1465
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
G GKT L + + P + +A + L WAE K ++ H
Sbjct: 921 GTGKTRLTIIFLQAYLQCFPDCKPVIIAPASLLL---TWAEEFKKWNISIPFHNL 972
>gi|323352542|gb|EGA85041.1| Kre33p [Saccharomyces cerevisiae VL3]
Length = 966
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 10/127 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F A++AGRG GK+ + + ++ + S LKT L+ + K L
Sbjct: 187 FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 244
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + ++ + D + + ++
Sbjct: 245 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHRQTIQYIVPQDHQVLGQAE--------LVVI 296
Query: 198 DEASGTP 204
DEA+ P
Sbjct: 297 DEAAAIP 303
>gi|323335941|gb|EGA77219.1| Kre33p [Saccharomyces cerevisiae Vin13]
Length = 961
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 10/127 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F A++AGRG GK+ + + ++ + S LKT L+ + K L
Sbjct: 187 FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 244
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + ++ + D + + ++
Sbjct: 245 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHRQTIQYIVPQDHQVLGQAE--------LVVI 296
Query: 198 DEASGTP 204
DEA+ P
Sbjct: 297 DEAAAIP 303
>gi|317129188|ref|YP_004095470.1| flagellar biosynthetic protein FlhF [Bacillus cellulosilyticus DSM
2522]
gi|315474136|gb|ADU30739.1| flagellar biosynthetic protein FlhF [Bacillus cellulosilyticus DSM
2522]
Length = 371
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
W + + W E + + +H S N + G+GKTT A +
Sbjct: 142 WYSENGDEKSKETIHEWTKEIINDLLSHIDYSPFNYKKRFLN--VVGPTGVGKTTTLAKI 199
Query: 98 VLWLMSTRPGISVICLANSET 118
+ + ++
Sbjct: 200 AAKIAISDGRKVAFITTDTYR 220
>gi|190409119|gb|EDV12384.1| hypothetical protein SCRG_03266 [Saccharomyces cerevisiae RM11-1a]
Length = 1056
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 10/127 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F A++AGRG GK+ + + ++ + S LKT L+ + K L
Sbjct: 277 FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + ++ + D + + ++
Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHRQTIQYIVPQDHQVLGQAE--------LVVI 386
Query: 198 DEASGTP 204
DEA+ P
Sbjct: 387 DEAAAIP 393
>gi|151944405|gb|EDN62683.1| killer toxin resistant protein [Saccharomyces cerevisiae YJM789]
gi|207341763|gb|EDZ69729.1| YNL132Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273837|gb|EEU08759.1| Kre33p [Saccharomyces cerevisiae JAY291]
gi|259149229|emb|CAY82471.1| Kre33p [Saccharomyces cerevisiae EC1118]
Length = 1056
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 10/127 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F A++AGRG GK+ + + ++ + S LKT L+ + K L
Sbjct: 277 FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + ++ + D + + ++
Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHRQTIQYIVPQDHQVLGQAE--------LVVI 386
Query: 198 DEASGTP 204
DEA+ P
Sbjct: 387 DEAAAIP 393
>gi|6324197|ref|NP_014267.1| Kre33p [Saccharomyces cerevisiae S288c]
gi|1730777|sp|P53914|KRE33_YEAST RecName: Full=UPF0202 protein KRE33; AltName: Full=Killer
toxin-resistance protein 33
gi|854505|emb|CAA86893.1| orf16 [Saccharomyces cerevisiae]
gi|1302072|emb|CAA96014.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285814522|tpg|DAA10416.1| TPA: Kre33p [Saccharomyces cerevisiae S288c]
Length = 1056
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 10/127 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
F A++AGRG GK+ + + ++ + S LKT L+ + K L
Sbjct: 277 FTVALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGY 334
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ + + + ++ + D + + ++
Sbjct: 335 QEHIDYDIIQSTNPDFNKAIVRVDIKRDHRQTIQYIVPQDHQVLGQAE--------LVVI 386
Query: 198 DEASGTP 204
DEA+ P
Sbjct: 387 DEAAAIP 393
>gi|313107129|ref|ZP_07793329.1| phage uncharacterized protein [Pseudomonas aeruginosa 39016]
gi|310879831|gb|EFQ38425.1| phage uncharacterized protein [Pseudomonas aeruginosa 39016]
Length = 550
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 29/246 (11%), Positives = 60/246 (24%), Gaps = 9/246 (3%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANS 116
+ + +P+ AI+A RG K+TL + V+W + T + + ++
Sbjct: 65 ALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDA 124
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFE--MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
Q T L A ++ F + + +
Sbjct: 125 FEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKRMRGL 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---LTERNANRFWIMTSNPR 231
P N + D + + L + I+
Sbjct: 185 ---RHGPHRPDLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTIL 241
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ PL ++F+ +D + D + +
Sbjct: 242 HYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWEKWEELLLNSDDEGAAALAFYQERVAA 301
Query: 292 DIDSFI 297
D I
Sbjct: 302 MEDGAI 307
>gi|193676308|ref|XP_001946967.1| PREDICTED: activating signal cointegrator 1 complex subunit 3
[Acyrthosiphon pisum]
Length = 2156
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 41/141 (29%), Gaps = 12/141 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT + + + +P V+ +A + ++ + W L K
Sbjct: 1347 VLLGAPTGSGKTIAAEIAMFRVFNEQPDAKVVYIAPLKALVRERM----KDWKIRLEEKL 1402
Query: 140 WFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ + + + + + R++ V ++ D
Sbjct: 1403 KKSVVELTGDVTPDIRAISNSSVIVTTPEKWDGVSRSWQTRNYVRQVA-------LVVLD 1455
Query: 199 EASGTPDVINLGILGFLTERN 219
E + + ++ N
Sbjct: 1456 EVHLLGEDRGPVLEIIISRLN 1476
>gi|212715327|ref|ZP_03323455.1| hypothetical protein BIFCAT_00221 [Bifidobacterium catenulatum DSM
16992]
gi|212661784|gb|EEB22359.1| hypothetical protein BIFCAT_00221 [Bifidobacterium catenulatum DSM
16992]
Length = 481
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 45/371 (12%), Positives = 86/371 (23%), Gaps = 56/371 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ + V +S R GK+TL + P +
Sbjct: 34 PWQR-LVADVAGEIDPDTGTY--FYDTVILSTPRQCGKSTLVDAVDTRNSQWGPDRFIYY 90
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
LA + K+L L + + + D +
Sbjct: 91 LAQTGKDAGD----HFKKYLKTLGSSPLAAITTRPYL------------GAGDLRQPFAN 134
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGI----LGFLTERNA-----NRF 223
+ G H G I DEA + I + + R +
Sbjct: 135 GSVIMPKSVTKVAG-HGVQGDKITLDEAFSLSEETGNTILDGFMPTMATRLKATGVQPQL 193
Query: 224 WIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE----------------------GI 261
WI ++ S F + + +
Sbjct: 194 WITSTEGTAESTFFNRRLDACRAGEQSRRTCWFDFGLPADEDPENLDSIMRHHPAAGLLW 253
Query: 262 DPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD--PYAPLI 319
+ + ++ + + + D I + + P P++
Sbjct: 254 NKTQLADFREQFQGNPAGWARAFGNRRDEGITDRAIDEALWAATVTAPVTPGDLDGRPVV 313
Query: 320 --MGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDAN 377
+ D+ + + I +++ L KY ++IDA
Sbjct: 314 FGVAVDVDGTHTSVSAGIANNDGTITVQLLRILDGTGYAPTELTRLCSKYG-APVVIDAR 372
Query: 378 NTGARTCDYLE 388
T A D L
Sbjct: 373 GTAADLSDRLR 383
>gi|119716507|ref|YP_923472.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
gi|119537168|gb|ABL81785.1| type III restriction enzyme, res subunit [Nocardioides sp. JS614]
Length = 558
Score = 38.7 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL 101
+ R +QLE E + + + + G+GKT + ++
Sbjct: 130 PARVPSKYELRPYQLEAAERIQ--------QDLEDTNRALLVLATGLGKTVVGGEVIRRH 181
Query: 102 MSTRPGISVICLANSE---TQLKTTLWAEVSK 130
+ + P ++ +A+ + QL+ LW + K
Sbjct: 182 LESHPDARILVVAHMKELVEQLEKALWRHLDK 213
>gi|167522693|ref|XP_001745684.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776033|gb|EDQ89655.1| predicted protein [Monosiga brevicollis MX1]
Length = 2142
Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 42/168 (25%), Gaps = 23/168 (13%)
Query: 46 EGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR 105
F Q + + + + A G GKT +L R
Sbjct: 1321 PRFKYFNPIQTQAFSALFESDES-----------VFVGAPTGSGKTVCAELTLLRAFGLR 1369
Query: 106 PGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQS-LSLHPAPWYSDVLHCSLGI 164
P + +A ++ + W L K + S A +
Sbjct: 1370 PDSKAVYVAATQA----ICDQTAAAWRDLFGAKLGKTVVSLTGDSSADLKLVGRGDLIVA 1425
Query: 165 DSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
++ + + R + + R H I DEA +
Sbjct: 1426 TAEQWDVISRRWKQRR-------HVQAVNLYIVDEAHLLGGDKGPVLE 1466
>gi|228899162|ref|ZP_04063433.1| Terminase large subunit [Bacillus thuringiensis IBL 4222]
gi|228860495|gb|EEN04884.1| Terminase large subunit [Bacillus thuringiensis IBL 4222]
Length = 559
Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 35/273 (12%), Positives = 66/273 (24%), Gaps = 45/273 (16%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTRPGIS 109
P S Q+ + + K GR K+ +L M+ +S
Sbjct: 71 PHSIQIFVFSNIYGWVHRNTG--LRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMS 128
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + ++T+ +W E+ ++ ++ +
Sbjct: 129 EVYVGATKTEQSKIVWNEIKAQMNGC------------------EDLKEKFNIAYGKIEH 170
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTS 228
S D I DE P I ++ R I+T+
Sbjct: 171 LKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITT 230
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
LS Y + + + ID E + LD
Sbjct: 231 AGFNLSHPCYRVEYQY--------VSKILDPNIDIENEEYFVMINELD------------ 270
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
D + E+A + + G
Sbjct: 271 ---KDDEITNPEVWEKANPILCSYEEGRTFLKG 300
>gi|228987129|ref|ZP_04147253.1| Terminase large subunit [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228772583|gb|EEM21025.1| Terminase large subunit [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 559
Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 34/331 (10%), Positives = 79/331 (23%), Gaps = 22/331 (6%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTRPGIS 109
P S Q+ + + K GR K+ +L M+ +S
Sbjct: 71 PHSIQIFVFSNIYGWVHRNTG--LRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMS 128
Query: 110 VICLANSETQLKTTLWAEVSKWLSLL--------PNKHWFEMQSLSLHPAPWYSDVLHCS 161
+ + ++T+ +W E+ ++ E + D
Sbjct: 129 EVYIGATKTEQSKIVWNEIKAQMNGCEDLKGKFNIAYGKIEHLKTDSFISALSKDAGKSG 188
Query: 162 LGIDS-----KHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL---G 213
G++ Y + + + G M II
Sbjct: 189 DGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVS 248
Query: 214 FLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD-DWKRFQIDTRTVEGIDPSFHEGIIAR 272
+ + N + K EI N + + +
Sbjct: 249 KILDPNIDIENEEYFVMVNELDKDDEITNSEVWEKANPILCSYEEGRTFLKGELQSALDV 308
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR-EPCPDPYAPLIMGCDIAEEGGDN 331
+ + ++ + ++ + +E E +G D++ +
Sbjct: 309 PEKMRN-YLTKNMNRWVDMKENGYMDMQKWKECKETVELSELKGLECTVGVDLSAKIDLT 367
Query: 332 TVVVLRRGPVIEHLFDWSKTDLRTTNNKISG 362
+V + + S T + K
Sbjct: 368 SVDFEFKKDDTYIVISHSFMPEDTLHEKRKT 398
>gi|38638456|ref|NP_943831.1| gp53 [Mycobacterium phage PG1]
gi|33334071|gb|AAQ12130.1| gp53 [Mycobacterium phage PG1]
Length = 559
Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q E +E +++H V + + G GK+T+ + R V+
Sbjct: 2 RPYQREAVEAIESHWSQG-------VTRVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 52
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+A+ +L + + + +P H +++ + +L + +
Sbjct: 53 MVAH-RGELIDQMAGTIFEVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRREAV 111
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
R G + E G D + G + +
Sbjct: 112 GFRRRILWDEVHHAGAEGFHTTF---TELGGYTDALFAGFTATMRRDDK 157
>gi|255927576|gb|ACU41198.1| gp52 [Mycobacterium phage Colbert]
Length = 559
Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q E +E +++H V + + G GK+T+ + R V+
Sbjct: 2 RPYQREAVEAIESHWSQG-------VTRVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 52
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+A+ +L + + + +P H +++ + +L + +
Sbjct: 53 MVAH-RGELIDQMAGTIFEVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRREAV 111
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
R G + E G D + G + +
Sbjct: 112 GFRRRILWDEVHHAGAEGFHTTF---TELGGYTDALFAGFTATMRRDDK 157
>gi|218885832|ref|YP_002435153.1| phage uncharacterized protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756786|gb|ACL07685.1| phage uncharacterized protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 558
Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 51/166 (30%), Gaps = 15/166 (9%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFK 79
+ + F F +FP K W E + + A PE K
Sbjct: 49 RHAQAQDDFVFFRRTYFPHYAKSGGDSVL---HRWLDEELPRIVAA---------PEGVK 96
Query: 80 GAISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
A++A RG K+T A + VLW + T ++ +A++ Q L A + +
Sbjct: 97 LAVAAPRGEAKSTYVALFFVLWCVLTNRKKYLLLIADALEQAAALLEAVKVELEANPRIG 156
Query: 139 HWFE--MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
F + + L + RPD
Sbjct: 157 MDFPDAAGQGRVWNVGTIVTRSNVKLQALGAGKRMRGLRHGPHRPD 202
>gi|190576381|ref|YP_001974226.1| DNA-dependent helicase II [Stenotrophomonas maltophilia K279a]
gi|190014303|emb|CAQ47950.1| putative DNA helicase II [Stenotrophomonas maltophilia K279a]
Length = 730
Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 45/351 (12%), Positives = 93/351 (26%), Gaps = 35/351 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ AG G GKT + + WL + A + T +K + ++
Sbjct: 27 VLAGAGSGKTRVLTHRIAWLHEVEGVPTHGIFAVTFT----------NKAAGEMRHRIDA 76
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIINDEA 200
++ + S W + + H+ + D+ + + +
Sbjct: 77 QLPNGSRGM--WIGTFHGLANRLLRLHWQDAKLPEGFQVMDSDDQLRLVKRVVQALELDD 134
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
P + + I + +Q
Sbjct: 135 GKYPAKQIAWWINAQKDEGRRPQHIQPEPHDAW-------LETMRQAYIEYQARCDRAGL 187
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
+D + D+ +F + +D F N I+ A R D ++
Sbjct: 188 VDFAELLLRAHELLRDNPALLSHYRARFREILVDEFQDTNAIQYAFVRVLAGDSGHVFVV 247
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+ + RG +E++ + + I I+ AN
Sbjct: 248 G-------DDDQAIYGWRGAKVENVQGFLR--DFPGAQTIRLEQNYRSTANILGAAN--- 295
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL---HVKMADWLEFAS 428
A + +G ++ G +DL N E + W+
Sbjct: 296 AVIAHNPDRIGKQLWTDSGDGEPIDLYAAYNEMDEARYIVERARQWVRDGG 346
>gi|109391899|ref|YP_655149.1| gp53 [Mycobacterium phage Orion]
gi|88910441|gb|ABD58369.1| gp53 [Mycobacterium phage Orion]
gi|255928272|gb|ACU41889.1| gp52 [Mycobacterium phage Puhltonio]
Length = 567
Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q E +E +++H V + + G GK+T+ + R V+
Sbjct: 10 RPYQREAVEAIESHWSQG-------VTRVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 60
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+A+ +L + + + +P H +++ + +L + +
Sbjct: 61 MVAH-RGELIDQMAGTIFEVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRREAV 119
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
R G + E G D + G + +
Sbjct: 120 GFRRRILWDEVHHAGAEGFHTTF---TELGGYTDALFAGFTATMRRDDK 165
>gi|116750280|ref|YP_846967.1| type III restriction enzyme, res subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116699344|gb|ABK18532.1| type III restriction enzyme, res subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 1018
Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 16/104 (15%)
Query: 2 SRELPTNPETEQKLFDLMWSDEIKLSFSNF-----VLHFFPWGEKGTPLEGFSAPRSWQL 56
+ PET + L W F + W + P G
Sbjct: 100 PNDWQVTPETARLL--QHWRHHRFNDIRPFFCQVEAVETVIWLTEVAPKRGKEG------ 151
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLW 100
+ H NS ++ NPE+ + A+ G GKTT+ A L+ W
Sbjct: 152 ---KFFLEHLANSNHDANPELLRLALKLATGAGKTTVMAMLIAW 192
>gi|255928514|gb|ACU42129.1| gp52 [Mycobacterium phage UncleHowie]
Length = 567
Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 13/169 (7%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q E +E +++H V + + G GK+T+ + R V+
Sbjct: 10 RPYQREAVEAIESHWSQG-------VTRVGVVLPTGTGKSTVIGRTAVNGYQNREP--VL 60
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+A+ +L + + + +P H +++ + +L + +
Sbjct: 61 MVAH-RGELIDQMAGTIFEVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRREAV 119
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA 220
R G + E G D + G + +
Sbjct: 120 GFRRRILWDEVHHAGAEGFHTTF---TELGGYTDALFAGFTATMRRDDK 165
>gi|39995162|ref|NP_951113.1| CRISPR-associated HD domain-containing protein [Geobacter
sulfurreducens PCA]
gi|39981924|gb|AAR33386.1| CRISPR-associated HD domain protein [Geobacter sulfurreducens PCA]
Length = 921
Score = 38.7 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 17/140 (12%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
E L ++P WQ + + + G +GKT++ A +L
Sbjct: 15 ESNYKLLTGNSPFPWQRKLFT---------MFVDKRFPETCPVPTG--LGKTSIIAIWLL 63
Query: 100 WLMSTRPGISV------ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPW 153
+ +V + + + E K L L K + L
Sbjct: 64 AVAHHTRNGTVTEFPRRLVYVVNRRTVVDQATDEARKMLEALITKPELCAVADVLSSLAT 123
Query: 154 YSDVLHCSLGIDSKHYSTMC 173
+D ++ ++
Sbjct: 124 RADAAPLAISTLRGQFADNA 143
>gi|310005651|gb|ADP00039.1| DNA maturase beta subunit [Cyanophage 9515-10a]
Length = 577
Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+ I A RG+GK+ + A VLW + ++ ++ S+ +
Sbjct: 44 RLQIQAFRGVGKSWITAAFVLWTLYNNSDKKIMVVSASKDRA 85
>gi|154492413|ref|ZP_02032039.1| hypothetical protein PARMER_02047 [Parabacteroides merdae ATCC
43184]
gi|154087638|gb|EDN86683.1| hypothetical protein PARMER_02047 [Parabacteroides merdae ATCC
43184]
Length = 422
Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 48/414 (11%), Positives = 123/414 (29%), Gaps = 61/414 (14%)
Query: 80 GAISAGRGIGKTTLNAWLV--LWLMSTRPGI---SVICLANSETQLKTTLWAEVSKWLSL 134
I+ GRG GK+ + + L T ++ + ++ E+ +
Sbjct: 20 ILITGGRGSGKSFNASTFIERLTFEMTPVEKIVHQILYTRYTMVSAGMSIIPEMME---- 75
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
+++ + + S+ +T S +
Sbjct: 76 -------KIELDGTTKYFKTTKTDIVNNMTKSRIMFRGIKTSSGNQTAKLKSIQGI-TTF 127
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------- 247
+ ++ T + I+ + ++ I+ NP + Y+ + +
Sbjct: 128 VCDEAEEWTSEEEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYKKYIEKTHKLAEIDGV 187
Query: 248 -------WKRFQIDTR---TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ-QDIDSF 296
I T +E + P F + + + + V G++ F
Sbjct: 188 QVQISTHPNVLHIHTTYFDNLENLSPEFLKEVEDMKANNPEKYAHVVIGRWADVAAGAVF 247
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
I++E P + +G D + + +L + +
Sbjct: 248 KKWGIVDEF------PAWAKKVAIGQDFGYTHDPSASIRCGIVDNALYLDEVDYRTGLLS 301
Query: 357 NNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDL--------EF 408
++ I L RP + + A++ R + G +Y V +V+ E
Sbjct: 302 SDIIKTL----RPWGLKVIADSADPRLIQEVHNGGIRIYAVEKGAGSVNAGLDKMKSMEI 357
Query: 409 CRNRRTE-LHVKMADWL----EFASLINH--SGLIQNLKSLKSFIVPN-TGELA 454
+R+ L + ++ + + IN + +++ +++ G++
Sbjct: 358 YITKRSYNLQSEFRKYVWAKDKDGNYINDPEDHDNHGIDAVRYYVLGELLGKIQ 411
>gi|257881816|ref|ZP_05661469.1| phage Terminase [Enterococcus faecium 1,231,502]
gi|257891947|ref|ZP_05671600.1| phage Terminase [Enterococcus faecium 1,231,410]
gi|257817474|gb|EEV44802.1| phage Terminase [Enterococcus faecium 1,231,502]
gi|257828307|gb|EEV54933.1| phage Terminase [Enterococcus faecium 1,231,410]
Length = 560
Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 49/448 (10%), Positives = 119/448 (26%), Gaps = 46/448 (10%)
Query: 12 EQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPR---SWQLEFMEVVDAHCLN 68
EQ L + + + E + P W+ +
Sbjct: 23 EQLLLKNYLEERVFTR--EDIYFDKQMVEDSINIPAQYFPFELIPWEKFLQCFIYGVRWK 80
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---VICLANSETQLKTTLW 125
+ + GRG GKT +W +L++ + GI + AN+E+Q KT+ +
Sbjct: 81 K--DKTLVFNRYLSLMGRGNGKTGFASWNNFFLLTAKHGIKNYDIDIYANNESQAKTS-F 137
Query: 126 AEVSKWLSLLPN---------KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
+V K + P+ K + + + ++ +
Sbjct: 138 DDVFKVIKDHPDLDKKVFKATKEVIQNIATNSKLRYNTANARTKDGKRPGANRFDEIHEN 197
Query: 177 SEER----PDTFVGHHNTYGMAIINDEAS-------GTPDVINLGILGFL-TERNANRFW 224
+ + G Y + + + G L +++ F
Sbjct: 198 EDYSMINVATSGGGKIRDYREFYDTTNGHVRGGPLDDIIEESKMILSGELGIDKDGAEFS 257
Query: 225 IMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
+ RL + ++ + + GL +
Sbjct: 258 SLFPFICRLDNDNEVDDPDMWEKACPTINYNADLKRKMFQEYSQMQRNAGL-RLTFMTKR 316
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEH 344
+ + + + + +E P+ +I D A+ +V +L +
Sbjct: 317 MNRPMEDTRFAVASYDDVLHTKEKEF-PEKMDEVIGTVDFADRRDFASVGLLGK------ 369
Query: 345 LFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAV 404
+ K T + I + + + + + ++G +
Sbjct: 370 ---YDKDVYFTQHTFIHESALRLQNIKREVIDISIDQGKSQIVHGKNIEADYIVGWFLEM 426
Query: 405 DLEFCRNRRTE-LHVK--MADWLEFASL 429
++ + ++ + LE A
Sbjct: 427 SNKYYIKKIAMDMYRAKILKPALEEAGF 454
>gi|168029927|ref|XP_001767476.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681372|gb|EDQ67800.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1075
Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 10/134 (7%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
A++A RG GK+ + + ++ A S LKT L+ + K + K
Sbjct: 279 VALTAARGRGKSAAL-GVAIAGAVAFGYSNIFVTAPSPENLKT-LFEFIFKGFDAMEYKE 336
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + + ++ ++ + + E+ ++ DE
Sbjct: 337 HIDYDLVESTNSAFNKAIVRVNIFRQHRQTIQYIQPKDHEKLAQAE--------LLVIDE 388
Query: 200 ASGTPDVINLGILG 213
A+ P I +LG
Sbjct: 389 AAAIPLPIVKALLG 402
>gi|311896589|dbj|BAJ28997.1| putative ABC transporter ATP-binding protein [Kitasatospora setae
KM-6054]
Length = 259
Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 18/203 (8%)
Query: 40 EKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVL 99
E TP S W+ + ++ P + G GKTT + +
Sbjct: 2 EATTPPPAVSIRDLWKR----FGARTAVAGLSLDLPAGSFIGLVGPNGAGKTTTLSMVT- 56
Query: 100 WLMSTRPGISVICLA------NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPW 153
+ +V+ + + + E + L + S
Sbjct: 57 -GLLRPDRGTVLVHGADVWRDPVAVKARIGILPEGLRMFERLNGRELLRFNGRSRGLPGA 115
Query: 154 YSDVL------HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI 207
+D L + T ++ + + +++ G V
Sbjct: 116 ETDRRAEELLAVLDLAGAADRLVADYSTGMRKKIGLAAALLHNPDVLFLDEPFEGVDPVS 175
Query: 208 NLGILGFLTERNANRFWIMTSNP 230
I LT A+ ++ S+
Sbjct: 176 AQTIRAVLTRYAASGSTVVFSSH 198
>gi|313611711|gb|EFR86253.1| phage terminase, large subunit, pbsx family [Listeria monocytogenes
FSL F2-208]
Length = 466
Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 46/364 (12%), Positives = 102/364 (28%), Gaps = 45/364 (12%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GR K+++ + ++ P +++CL L +++ ++ L +
Sbjct: 59 IIAKGGRSSMKSSVISLKLVEKKMANPQSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 118
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNT--YGMAIIN 197
F+ + I K + T + P Y +
Sbjct: 119 QFKFGKSP--------------MEIIHKEWGTGFYFSGCDDPAKLKSMKIPVGYVSGLWF 164
Query: 198 DEASGTPDVIN-LGILGFLTER----NANRFWIMTSNPRRLSGKF---YEIFNKPLDDWK 249
+E + V + + M+ NP R ++ Y + DD+
Sbjct: 165 EELAEFSGVTDIDVVEDTFIREDLPDGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYL 224
Query: 250 RFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----------I 297
E + + I D D R G+ + + I
Sbjct: 225 IHHTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFHPLKAI 284
Query: 298 PLN----IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
P + +I+ A++ L G + +
Sbjct: 285 PADDRLILIDFAIDTGHQVSATTYLSFGLTAKRNVILLNTYYYSPANQV--VKKAPSEYS 342
Query: 354 RTTNNKISGLVEKYRP--DAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
+ + ++ +VE Y D +D+ G Y + G ++ V K+ ++F +
Sbjct: 343 KELRDFMTKVVENYNTNVDMQTVDSAEGGL-RNQYYKDYGVSLHPVAKGKKVDMIDFVCD 401
Query: 412 RRTE 415
+
Sbjct: 402 LLAQ 405
>gi|308188858|ref|YP_003932989.1| DNA helicase II [Pantoea vagans C9-1]
gi|308059368|gb|ADO11540.1| DNA helicase II [Pantoea vagans C9-1]
Length = 720
Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 38/297 (12%), Positives = 85/297 (28%), Gaps = 35/297 (11%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGISVICL 113
E ++ ++ + +V P + + AG G GKT + + WLMS P +
Sbjct: 5 ELLDGLNDNQRAAVAAPRSNLL---VLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ + +H E + W + + H+
Sbjct: 62 FTNKAAAE---------------MRHRIEHLIGTSQGGMWIGTFHGLAHRLLRAHHLDAG 106
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + ++ D G + +
Sbjct: 107 LPQDFQILDSEDQLRLLKRLI----KSMNLDDKQWPARQGMWYINGKKDEGLRPKHIESY 162
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + + ++ +Q +D + L+ +F +
Sbjct: 163 GNPIEQTWLRI---YQAYQEACDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNVLV 219
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK 350
D F N I+ A R D +I+G D+ + RG +E++ + +
Sbjct: 220 DEFQDTNNIQYAWIRMLAGDSGRVIIVG-------DDDQSIYGWRGAQVENIQRFLQ 269
>gi|124028015|ref|YP_001013335.1| P-loop ATPase [Hyperthermus butylicus DSM 5456]
gi|123978709|gb|ABM80990.1| P-loop ATPase [Hyperthermus butylicus DSM 5456]
Length = 743
Score = 38.7 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA 114
Q E ++ + AH + RG GK+ L V +++++ V A
Sbjct: 203 QAEALDKIVAHVR-------SRGRSILVLGDRGRGKSGLLGLAVAYIVASHMAGFVSVTA 255
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHW 140
S +++ + + L L +HW
Sbjct: 256 PSPANVQS-FFRILRLALGKLGTRHW 280
>gi|225457229|ref|XP_002284129.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297733882|emb|CBI15129.3| unnamed protein product [Vitis vinifera]
Length = 2093
Score = 38.7 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
+ A G GKT +L L +T+P + VI +A LK + + W + ++
Sbjct: 1307 VLLGAPTGSGKTISAELAMLHLFNTQPDMKVIYIAP----LKAIVRERMIDWKKRIVSQL 1362
Query: 140 WFEMQS-LSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
EM + + + + + + + R +
Sbjct: 1363 GKEMVEMTGDYTPDLMALMSADIIISTPEKWDGISRNW 1400
>gi|227496838|ref|ZP_03927104.1| type I restriction-modification system restriction subunit
[Actinomyces urogenitalis DSM 15434]
gi|315656944|ref|ZP_07909831.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|226833659|gb|EEH66042.1| type I restriction-modification system restriction subunit
[Actinomyces urogenitalis DSM 15434]
gi|315492899|gb|EFU82503.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 1009
Score = 38.3 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 34/114 (29%), Gaps = 14/114 (12%)
Query: 8 NPETEQKLFDLM-WSDEIKLS--------FSNFVLHFFPWGEKGTPLEGFSAPRSWQLEF 58
NP E K W + F FV P G + PR QL+
Sbjct: 227 NPPVEGKFKTSYLWEQVLAKDSLLDILHRFVQFVPGKTPEGRPAKSKDKVIFPRFHQLDA 286
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+ + A + N V A G GK+ AWL L + +
Sbjct: 287 VRKLIADAKANGAGHNYLVQHSA-----GSGKSNTIAWLAHHLSNLHDDQQRVV 335
>gi|304398155|ref|ZP_07380030.1| DNA helicase II [Pantoea sp. aB]
gi|304354441|gb|EFM18813.1| DNA helicase II [Pantoea sp. aB]
Length = 720
Score = 38.3 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 38/297 (12%), Positives = 85/297 (28%), Gaps = 35/297 (11%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS---TRPGISVICL 113
E ++ ++ + +V P + + AG G GKT + + WLMS P +
Sbjct: 5 ELLDGLNDNQRAAVAAPRSNLL---VLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMC 173
++ + +H E + W + + H+
Sbjct: 62 FTNKAAAE---------------MRHRIEHLIGTSQGGMWIGTFHGLAHRLLRAHHLDAG 106
Query: 174 RTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
+ D+ + ++ D G + +
Sbjct: 107 LPQDFQILDSEDQLRLLKRLI----KSMNLDDKQWPARQGMWYINGKKDEGLRPKHIESY 162
Query: 234 SGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDI 293
+ + + ++ +Q +D + L+ +F +
Sbjct: 163 GNPIEQTWLRI---YQAYQEACDRAGLVDFAELLLRAHELWLNKPHILNHYRERFTNVLV 219
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSK 350
D F N I+ A R D +I+G D+ + RG +E++ + +
Sbjct: 220 DEFQDTNNIQYAWIRMLAGDSGRVIIVG-------DDDQSIYGWRGAQVENIQRFLQ 269
>gi|256023437|ref|ZP_05437302.1| predicted type I site-specific deoxyribonuclease, HsdR family
protein [Escherichia sp. 4_1_40B]
Length = 1031
Score = 38.3 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 44/323 (13%), Positives = 92/323 (28%), Gaps = 32/323 (9%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICL---ANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
+G GK+ WL W+ P V+ + + Q+++
Sbjct: 278 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVNEDIYRTSSGNDLI- 336
Query: 143 MQSLSLHPAPWYSDVL--HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ HP PW L +++ + +E + + + DE
Sbjct: 337 --ATLNHPNPWLICSLVHKFGRRSEAEDNAATDAFITELQQSLTKTFRAKGDLFVFVDEC 394
Query: 201 -------------SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
+ PD + +G G + + + P + KF E +
Sbjct: 395 HRTQSGKLHNAMTAILPDALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVVL 454
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLD-SDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
R++ + S++ R ++ ++ + +E+ +
Sbjct: 455 DLRYEARDIDQYLTSEKKVDDWFEAKTRGLSNLARTQLKQKW-GSMQKLLSSKSRLEQIV 513
Query: 307 NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
N P +M + + + +F K++ +V
Sbjct: 514 NDILLDMDTRPRLMD---GRGNAMLVCSSIYQACKVYEMFSQ-----TELAGKVA-IVTS 564
Query: 367 YRPDAIIIDANNTGARTCDYLEM 389
YRPDA I TG + L
Sbjct: 565 YRPDAASIKGEETGEGLTEKLSK 587
>gi|315618351|gb|EFU98939.1| type I site-specific deoxyribonuclease, HsdR family protein
[Escherichia coli 3431]
Length = 1028
Score = 38.3 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 44/323 (13%), Positives = 92/323 (28%), Gaps = 32/323 (9%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICL---ANSETQLKTTLWAEVSKWLSLLPNKHWFE 142
+G GK+ WL W+ P V+ + + Q+++
Sbjct: 275 QGSGKSLTMVWLAKWIRENVPNSRVLIVTDRTELDEQIESVFMGVNEDIYRTSSGNDLI- 333
Query: 143 MQSLSLHPAPWYSDVL--HCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
+ HP PW L +++ + +E + + + DE
Sbjct: 334 --ATLNHPNPWLICSLVHKFGRRSEAEDNAATDAFITELQQSLTKTFRAKGDLFVFVDEC 391
Query: 201 -------------SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD 247
+ PD + +G G + + + P + KF E +
Sbjct: 392 HRTQSGKLHNAMTAILPDALFIGFTGTPLMKKDKKKSVEVFGPYIHTYKFDEAVADGVVL 451
Query: 248 WKRFQIDTRTVEGIDPSFHEGIIARYGLD-SDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
R++ + S++ R ++ ++ + +E+ +
Sbjct: 452 DLRYEARDIDQYLTSEKKVDDWFEAKTRGLSNLARTQLKQKW-GSMQKLLSSKSRLEQIV 510
Query: 307 NREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEK 366
N P +M + + + +F K++ +V
Sbjct: 511 NDILLDMDTRPRLMD---GRGNAMLVCSSIYQACKVYEMFSQ-----TELAGKVA-IVTS 561
Query: 367 YRPDAIIIDANNTGARTCDYLEM 389
YRPDA I TG + L
Sbjct: 562 YRPDAASIKGEETGEGLTEKLSK 584
>gi|302535993|ref|ZP_07288335.1| gliding motility-associated ABC transporter ATP-binding subunit
GldA [Streptomyces sp. C]
gi|302444888|gb|EFL16704.1| gliding motility-associated ABC transporter ATP-binding subunit
GldA [Streptomyces sp. C]
Length = 278
Score = 38.3 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 22/175 (12%), Positives = 48/175 (27%), Gaps = 16/175 (9%)
Query: 69 SVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLA-------NSETQLK 121
++ P + G GKTT + + RP + + +A E + +
Sbjct: 45 GIDLELPAGRFVGLVGPNGAGKTTTLSMVT---GLLRPDMGRVVVAGHDVWADPVEVKSR 101
Query: 122 TTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDV------LHCSLGIDSKHYSTMCRT 175
+ E + L + + +D L T
Sbjct: 102 IGVLPEGLRMFERLSGRELLGYMGRLRGLSGEETDKRATQLLDVLDLAGSQHKLVVDYST 161
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
++ + + +++ G V I G L A+ ++ S+
Sbjct: 162 GMRKKIGLAAALLHNPEVLFLDEPFEGVDPVSAQTIRGVLERYTASGATVVFSSH 216
>gi|290957398|ref|YP_003488580.1| type I restriction protein [Streptomyces scabiei 87.22]
gi|260646924|emb|CBG70023.1| putative type I restriction enzyme [Streptomyces scabiei 87.22]
Length = 1028
Score = 38.3 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 39/139 (28%), Gaps = 10/139 (7%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLL-PNKHWFEMQ 144
+G GK+ WL W+ +P V+ + T+L + + K ++
Sbjct: 276 QGSGKSLTMVWLAKWIRENQPDARVLLI-TDRTELDDQIEKVFQGVNESIYRTKSGGDLL 334
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY---SEERPDTFVGHHNTYGMAIINDEAS 201
+ W L + E + H + + DEA
Sbjct: 335 ATLNVSEEWLVCSLVHKFRGSEDEAARDAAESEFIRELKATIPKDFHAKGNIFVFVDEAH 394
Query: 202 -----GTPDVINLGILGFL 215
D + + G +
Sbjct: 395 RTQSGKMHDAMKALMPGAM 413
>gi|228915235|ref|ZP_04078830.1| Terminase large subunit [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228844466|gb|EEM89522.1| Terminase large subunit [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
Length = 559
Score = 38.3 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 63/238 (26%), Gaps = 32/238 (13%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTRPGIS 109
P S Q+ + + K GR K+ +L M+ +S
Sbjct: 71 PHSIQIFVFSNIYGWVHRNTG--LRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMS 128
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + ++T+ +W E+ ++ ++ +
Sbjct: 129 EVYIGATKTEQSKIVWNEIKAQMNGC------------------EDLKGKFNIAYGKIEH 170
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTS 228
S D I DE P I ++ R I+T+
Sbjct: 171 LKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITT 230
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG--IIARYGLDSDVTRVEV 284
LS Y + + + ID E ++ D ++T EV
Sbjct: 231 AGFNLSHPCYRVEYQY--------VSKILDPNIDIENEEYFVMVNELDKDDEITNAEV 280
>gi|116513197|ref|YP_812104.1| hypothetical protein LACR_2573 [Lactococcus lactis subsp. cremoris
SK11]
gi|116108851|gb|ABJ73991.1| hypothetical protein LACR_2573 [Lactococcus lactis subsp. cremoris
SK11]
Length = 906
Score = 38.3 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q E + +P +F A G GKT L A L+L+L + +
Sbjct: 49 RYYQDEAVRNYHYTQTRIKPSPQHVLFNMAT----GSGKTDLMAGLILYLYQEYDYKNFL 104
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP 152
N+ + L T V++ + E+ +
Sbjct: 105 FTVNTNSVLMKTKDNLVNQNSDKYLFQDKIEIDGRQISILE 145
>gi|84687759|ref|ZP_01015631.1| Possible DNA helicase [Maritimibacter alkaliphilus HTCC2654]
gi|84664260|gb|EAQ10752.1| Possible DNA helicase [Rhodobacterales bacterium HTCC2654]
Length = 1569
Score = 38.3 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 22/200 (11%), Positives = 60/200 (30%), Gaps = 13/200 (6%)
Query: 1 MSRELPTNPETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFME 60
+ + + + D + ++F+ + P + + + P+++ E ++
Sbjct: 896 VMAAYAAKGMEDIETAQKLAHDYFAMDEADFMKAWMP--GRMSEFRRQATPQTY-AEIVD 952
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLM-STRPGISVICLANSETQ 119
+ + + E + AG G GKT + V +L+ R + I +
Sbjct: 953 DLGNTTQAQIVRDDREQTNVLVLAGPGSGKTRVLVHRVAYLVRIKREDPNGILVLAYNRH 1012
Query: 120 LKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
AE+ + L L + L++ ++ + + +
Sbjct: 1013 AA----AEIRERLRRLIGDDARFVTVLTI-----HALAMRLVGASFAGRAGAETPDFDTL 1063
Query: 180 RPDTFVGHHNTYGMAIINDE 199
D + +
Sbjct: 1064 LTDAARLLRGDGLDKVEAEA 1083
>gi|315654463|ref|ZP_07907371.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
gi|315491498|gb|EFU81115.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
Length = 424
Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 2/156 (1%)
Query: 75 PEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P++ AI +G+GKT W+ L P + + A++ QL + +W
Sbjct: 26 PQLPAIAIDGAKGVGKTETAQRWVEHVLALDNPEMGQLIAADTVNQLTKYATTCIDEWQK 85
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
P P + + H RP + +T
Sbjct: 86 YPPVWDAVRRLVDQQTPNRFLLTGSATPVSGVDTHSGAGRIASLRLRPLSLAERPSTSPR 145
Query: 194 AIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
I+ SG ++ I G LT+
Sbjct: 146 VFISRLFSGDAEISGETIFG-LTDYAQAICETGMPQ 180
>gi|228926945|ref|ZP_04090011.1| Terminase large subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228832680|gb|EEM78251.1| Terminase large subunit [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 559
Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 63/238 (26%), Gaps = 32/238 (13%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTRPGIS 109
P S Q+ + + K GR K+ +L M+ +S
Sbjct: 71 PHSIQIFVFSNIYGWVHRNTG--LRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMS 128
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + ++T+ +W E+ ++ ++ +
Sbjct: 129 EVYIGATKTEQSKIVWNEIKAQMNGC------------------EDLKGKFNIAYGKIEH 170
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTS 228
S D I DE P I ++ R I+T+
Sbjct: 171 LKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITT 230
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG--IIARYGLDSDVTRVEV 284
LS Y + + + ID E ++ D ++T EV
Sbjct: 231 AGFNLSHPCYRVEYQY--------VSKILDPNIDIENEEYFVMVNELDKDDEITNAEV 280
>gi|254521548|ref|ZP_05133603.1| DNA helicase II [Stenotrophomonas sp. SKA14]
gi|219719139|gb|EED37664.1| DNA helicase II [Stenotrophomonas sp. SKA14]
Length = 730
Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 44/351 (12%), Positives = 93/351 (26%), Gaps = 35/351 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ AG G GKT + + WL + A + T +K + ++
Sbjct: 27 VLAGAGSGKTRVLTHRIAWLHEVDGVPTHGIFAVTFT----------NKAAGEMRHRIDA 76
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIINDEA 200
++ + S W + + H+ + D+ + + +
Sbjct: 77 QLPNGSRGM--WIGTFHGLANRLLRLHWQDAKLPEGFQVMDSDDQLRLVKRVVQALELDD 134
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
P + + + + +Q
Sbjct: 135 GKYPAKQIAWWINAQKDEGRRPQ--HIQPEPNDAW-----LETMRQAYIEYQSRCDRAGL 187
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
+D + D+ +F + +D F N I+ A R D ++
Sbjct: 188 VDFAELLLRAHELLRDNPALLSHYRARFREILVDEFQDTNAIQYAFVRVLAGDSGHVFVV 247
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+ + RG +E++ + + I I+ AN
Sbjct: 248 G-------DDDQAIYGWRGAKVENVQGFLR--DFPGAQTIRLEQNYRSTANILGAAN--- 295
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL---HVKMADWLEFAS 428
A + +G ++ G +DL N E + W+
Sbjct: 296 AVIAHNPDRIGKQLWTDSGDGEPIDLYAAYNEMDEARYIVERARQWVRDGG 346
>gi|170782067|ref|YP_001710399.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus]
gi|169156635|emb|CAQ01787.1| putative helicase [Clavibacter michiganensis subsp. sepedonicus]
Length = 823
Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ + ++A G GKT + A ++L RP + A
Sbjct: 30 LRFDLDPFQRAAAESLENGRSVLVAAPTGAGKT-IVAEFAVYLAMQRPSAKIFYTAP-MK 87
Query: 119 QLKTTLWAEVSKWL 132
L +AE+
Sbjct: 88 ALSNQKYAELVAEY 101
>gi|215479952|ref|YP_002332340.1| hypothetical protein PPMP38_gp28 [Pseudomonas phage MP38]
gi|169409320|gb|ACA57724.1| hypothetical protein [Pseudomonas phage MP38]
Length = 550
Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 29/246 (11%), Positives = 60/246 (24%), Gaps = 9/246 (3%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANS 116
+ + +P+ AI+A RG K+TL + V+W + T + + ++
Sbjct: 65 ALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDA 124
Query: 117 ETQLKTTLWAEVSKW--LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
Q T L A ++ L + + +
Sbjct: 125 FEQAATMLEAIKAELEFNPRLATDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKRMRGL 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---LTERNANRFWIMTSNPR 231
P N + D + + L + I+
Sbjct: 185 ---RHGPHRPDLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTIL 241
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ PL ++F+ +D + D + +
Sbjct: 242 HYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWEKWEELLLNSDDEGAAALAFYQERAAA 301
Query: 292 DIDSFI 297
D I
Sbjct: 302 MEDGAI 307
>gi|75762541|ref|ZP_00742398.1| Terminase large subunit [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74489980|gb|EAO53339.1| Terminase large subunit [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 568
Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 34/273 (12%), Positives = 66/273 (24%), Gaps = 45/273 (16%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTRPGIS 109
P S Q+ + + + GR K+ +L M+ +S
Sbjct: 80 PHSIQIFVFSNIYGWVHRNTG--LRRFKRPYWQVGRKNAKSQSLACVGSYEAMAFGENMS 137
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + ++T+ +W E+ ++ ++ +
Sbjct: 138 EVYVGATKTEQSKIVWNEIKAQMNGC------------------EDLKEKFNIAYGKIEH 179
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTS 228
S D I DE P I ++ R I+T+
Sbjct: 180 LKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITT 239
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
LS Y + + + ID E + LD
Sbjct: 240 AGFNLSHPCYRVEYQY--------VSKILDPNIDIENEEYFVMINELD------------ 279
Query: 289 PQQDIDSFIPLNIIEEALNREPCPDPYAPLIMG 321
D + E+A + + G
Sbjct: 280 ---KDDEITNPEVWEKANPILCSYEEGRTFLKG 309
>gi|323512078|gb|ADX87539.1| DNA packaging protein B [Vibrio phage ICP3_2009_B]
gi|323512127|gb|ADX87587.1| DNA packaging protein B [Vibrio phage ICP3_2009_A]
gi|323512176|gb|ADX87635.1| DNA packaging protein B [Vibrio phage ICP3_2008_A]
gi|323512224|gb|ADX87682.1| DNA packaging protein B [Vibrio phage ICP3_2007_A]
Length = 572
Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 31/261 (11%), Positives = 69/261 (26%), Gaps = 28/261 (10%)
Query: 25 KLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA 84
K F F++ W P P Q + + A + + + A
Sbjct: 2 KNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAA----------GDERRFILQA 44
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK-TTLWAEVSKWLSLLPNKHWFEM 143
RGIGK+ + V+W + P + + ++ S+ + +++ + + + LLP H +
Sbjct: 45 FRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF--IKRIIDLLPFLHELKP 102
Query: 144 -QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + K + N
Sbjct: 103 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLT----GSRADILIADDVEVPNNSATQA 158
Query: 203 TPDVINLGIL--GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI-DTRTVE 259
D + + + + N ++ T + E W D +E
Sbjct: 159 ARDRLGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARYPKDMNDLE 218
Query: 260 GIDPSFHEGIIARYGLDSDVT 280
+ + +
Sbjct: 219 SYGNRLAPMLKDELMENPEAY 239
>gi|228950449|ref|ZP_04112609.1| Terminase large subunit [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228809264|gb|EEM55725.1| Terminase large subunit [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
Length = 559
Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 63/238 (26%), Gaps = 32/238 (13%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTRPGIS 109
P S Q+ + + K GR K+ +L M+ +S
Sbjct: 71 PHSIQIFVFSNIYGWVHRNTG--LRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMS 128
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + ++T+ +W E+ ++ ++ +
Sbjct: 129 EVYIGATKTEQSKIVWNEIKAQMNGC------------------EDLKGKFNIAYGKIEH 170
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTS 228
S D I DE P I ++ R I+T+
Sbjct: 171 LKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITT 230
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEG--IIARYGLDSDVTRVEV 284
LS Y + + + ID E ++ D ++T EV
Sbjct: 231 AGFNLSHPCYRVEYQY--------VSKILDPNIDIENEEYFVMVNELDKDDEITNAEV 280
>gi|134299066|ref|YP_001112562.1| phage terminase GpA [Desulfotomaculum reducens MI-1]
gi|134051766|gb|ABO49737.1| phage terminase GpA [Desulfotomaculum reducens MI-1]
Length = 614
Score = 38.3 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 24/215 (11%), Positives = 54/215 (25%), Gaps = 27/215 (12%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+Q E M + PE+ + + IGKT ++ + + ++
Sbjct: 58 PYQREIMNAISD----------PEISTVVVMSSAQIGKTEFLLNVIGYHID-YDPAPILL 106
Query: 113 LANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+ + K M + ++ G H
Sbjct: 107 IQPT------------DKMAEAFSKDRLAPMIRDTPVLRSKVANAKSRDSGNTLLHKKFT 154
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILG-FLTERNANRFW---IMTS 228
+ + G + ++ DE P L ++ AN FW +
Sbjct: 155 GGHITLVGANAPTGLASRPIRIVLADEVDRYPASAGTEGDPLTLAKKRANTFWNRKFVYV 214
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDP 263
+ + G + + + + P
Sbjct: 215 STPGIKGVSRIEAEYENSTMEEWHVPCPSCGHYQP 249
>gi|148272867|ref|YP_001222428.1| putative helicase [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147830797|emb|CAN01738.1| putative helicase [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
Length = 823
Score = 38.3 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ + ++A G GKT + A ++L RP + A
Sbjct: 30 LRFDLDPFQRAAAESLENGRSVLVAAPTGAGKT-IVAEFAVYLAMQRPSAKIFYTAP-MK 87
Query: 119 QLKTTLWAEVSKWL 132
L +AE+
Sbjct: 88 ALSNQKYAELVAEY 101
>gi|123456065|ref|XP_001315771.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121898458|gb|EAY03548.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 876
Score = 38.3 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 49/201 (24%), Gaps = 29/201 (14%)
Query: 42 GTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL 101
G P + R WQ E ++ N + A GKT + + L
Sbjct: 32 GIPPPAITKLREWQTELLK----------TNDWAQRKSCVCVAPTSGGKTLIAEIAISQL 81
Query: 102 MSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
+ P +I FE + P++ ++
Sbjct: 82 LDDNPHAKIIYALPFVALASEKF--------------LDFEKRFRKYTVRPFFQNIGGSD 127
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVI----NLGILGFLTE 217
S T + +S G+H +I DEA D +L L
Sbjct: 128 FRTGSIAICTYEKAHSILNNSIKTGYH-QDIKLVIIDEAHMIGDESRGVVAEALLMKLKS 186
Query: 218 RNANRFWIMTSNPRRLSGKFY 238
I +
Sbjct: 187 LQTQPQIIALTATLNEEDARR 207
>gi|228955879|ref|ZP_04117837.1| Terminase large subunit [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228803798|gb|EEM50459.1| Terminase large subunit [Bacillus thuringiensis serovar kurstaki
str. T03a001]
Length = 559
Score = 38.3 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 26/199 (13%), Positives = 52/199 (26%), Gaps = 22/199 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTRPGIS 109
P S Q+ + + K GR K+ +L M+ +S
Sbjct: 71 PHSIQIFVFSNIYGWVHRNTG--LRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMS 128
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + ++T+ +W E+ ++ ++ +
Sbjct: 129 EVYVGATKTEQSKIVWNEIKAQMNGC------------------EDLKEKFNIAYGKIEH 170
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTS 228
S D I DE P I ++ R I+T+
Sbjct: 171 LKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITT 230
Query: 229 NPRRLSGKFYEIFNKPLDD 247
LS Y + + +
Sbjct: 231 AGFNLSHPCYRVEYQYVSK 249
>gi|229156198|ref|ZP_04284295.1| Terminase large subunit [Bacillus cereus ATCC 4342]
gi|228627269|gb|EEK83999.1| Terminase large subunit [Bacillus cereus ATCC 4342]
Length = 559
Score = 38.3 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 26/199 (13%), Positives = 52/199 (26%), Gaps = 22/199 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTRPGIS 109
P S Q+ + + K GR K+ +L M+ +S
Sbjct: 71 PHSIQIFVFSNIYGWIHRNTG--LRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMS 128
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + ++T+ +W E+ ++ ++ +
Sbjct: 129 EVYIGATKTEQSKIVWNEIKAQMNGC------------------EDLKGKFNIAYGKIEH 170
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTS 228
S D I DE P I ++ R I+T+
Sbjct: 171 LKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITT 230
Query: 229 NPRRLSGKFYEIFNKPLDD 247
LS Y + + +
Sbjct: 231 AGFNLSHPCYRVEYQYISK 249
>gi|325171325|ref|YP_004251296.1| DNA packaging protein B [Vibrio phage ICP3]
gi|323512031|gb|ADX87493.1| DNA packaging protein B [Vibrio phage ICP3]
Length = 586
Score = 38.3 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 31/261 (11%), Positives = 69/261 (26%), Gaps = 28/261 (10%)
Query: 25 KLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA 84
K F F++ W P P Q + + A + + + A
Sbjct: 16 KNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAA----------GDERRFILQA 58
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK-TTLWAEVSKWLSLLPNKHWFEM 143
RGIGK+ + V+W + P + + ++ S+ + +++ + + + LLP H +
Sbjct: 59 FRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF--IKRIIDLLPFLHELKP 116
Query: 144 -QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + K + N
Sbjct: 117 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLT----GSRADILIADDVEVPNNSATQA 172
Query: 203 TPDVINLGIL--GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI-DTRTVE 259
D + + + + N ++ T + E W D +E
Sbjct: 173 ARDRLGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARYPKDMNDLE 232
Query: 260 GIDPSFHEGIIARYGLDSDVT 280
+ + +
Sbjct: 233 SYGNRLAPMLKDELMENPEAY 253
>gi|294677863|ref|YP_003578478.1| phage terminase large subunit [Rhodobacter capsulatus SB 1003]
gi|294476683|gb|ADE86071.1| phage terminase, large subunit [Rhodobacter capsulatus SB 1003]
Length = 537
Score = 38.3 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 44/319 (13%), Positives = 78/319 (24%), Gaps = 49/319 (15%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + VF RG KT+L A L L + R
Sbjct: 50 PWQERIVRRIYGPRDAQGARVVKMVFLMI---PRGNRKTSLAAALALLHLLGPERVPAGQ 106
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
I A S+ + + E ++ + ++ D
Sbjct: 107 IIFAASDREQAGIGFREAAEIIR------QDRRLEAVTRLYDAHNAPKAIKSTRDGSALK 160
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
+ + T E + + +R I T+
Sbjct: 161 AVSSDGRAQHGTTPTFVLADEIHVWQGREL-------WEALQSGMAKRAGGLTVIATTAG 213
Query: 231 RRLSGKFYEIF----------------------NKPLDDWKRFQIDTRTVEGIDPSFHE- 267
R G E++ P DW+ + R G+ F +
Sbjct: 214 RGNEGLAAELYAYARGVALGQIVNPEFLPILFEPDPGADWEDEALWHRVNPGLAHGFPDL 273
Query: 268 ---GIIARYGLDSD----VTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPD-PYAPLI 319
+AR DS ++ D + + + + D P
Sbjct: 274 DGLRSLARKAKDSPGERYSFEQFNLNRWLGNSRDPLFDFDTYDARVFDDDEEDLEQLPCW 333
Query: 320 MGCDIAEEGGDNTVVVLRR 338
+G D++ G VV
Sbjct: 334 LGVDLSRSGDLTAVVAAFH 352
>gi|302409214|ref|XP_003002441.1| intron-binding protein aquarius [Verticillium albo-atrum VaMs.102]
gi|261358474|gb|EEY20902.1| intron-binding protein aquarius [Verticillium albo-atrum VaMs.102]
Length = 1120
Score = 38.3 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 40/156 (25%), Gaps = 2/156 (1%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
I G GKT + + ++ + P + +A+S Q L+A++ +
Sbjct: 603 TVIVGPPGTGKTDVASQIINNIYHNFPEQRTLLIAHS-NQALNQLFAKIIALDIDERHLL 661
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
L+ +S +D++ T G H
Sbjct: 662 RLGHGEEDLYTEGSFSKHGRVESFLDNRDRYLQEVTLLASSIGAP-GAHGNSAETAGYFN 720
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSG 235
+ + +E I R
Sbjct: 721 SVYIEPAWAKFMEAAKSETAMTATVIEAFPFHRFFS 756
>gi|194367719|ref|YP_002030329.1| DNA-dependent helicase II [Stenotrophomonas maltophilia R551-3]
gi|194350523|gb|ACF53646.1| DNA helicase II [Stenotrophomonas maltophilia R551-3]
Length = 730
Score = 38.3 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 45/351 (12%), Positives = 93/351 (26%), Gaps = 35/351 (9%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ AG G GKT + + WL + A + T +K + ++
Sbjct: 27 VLAGAGSGKTRVLTHRIAWLHEVDGVPTHGIFAVTFT----------NKAAGEMRHRIDA 76
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHN-TYGMAIINDEA 200
++ + S W + + H+ + D+ + + +
Sbjct: 77 QLPNGSRGM--WIGTFHGLANRLLRLHWQDAKLPEGFQVMDSDDQLRLVKRVVQALELDD 134
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
P + + I + +Q
Sbjct: 135 GKYPAKQIAWWINAQKDEGRRPQHIQPEPHDAW-------LETMRQAYIEYQARCDRAGL 187
Query: 261 IDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320
+D + D+ +F + +D F N I+ A R D ++
Sbjct: 188 VDFAELLLRAHELLRDNPALLSHYRARFREILVDEFQDTNAIQYAFVRVLAGDSGHVFVV 247
Query: 321 GCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTG 380
G D+ + RG +E++ + + I I+ AN
Sbjct: 248 G-------DDDQAIYGWRGAKVENVQGFLR--DFPGAQTIRLEQNYRSTANILGAAN--- 295
Query: 381 ARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTEL---HVKMADWLEFAS 428
A + +G ++ G +DL N E + W+
Sbjct: 296 AVIAHNPDRIGKELWTDSGDGEPIDLYAAYNEMDEARYIVERARQWVRDGG 346
>gi|256374708|ref|YP_003098368.1| hypothetical protein Amir_0555 [Actinosynnema mirum DSM 43827]
gi|255919011|gb|ACU34522.1| hypothetical protein Amir_0555 [Actinosynnema mirum DSM 43827]
Length = 478
Score = 38.3 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 66 CLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
L E + A++ G G GK+TL + LV ++ P +
Sbjct: 43 WLRGHRARFAEPVRVAVAGGHGTGKSTLVSALVGEELTAPPTATAWY 89
>gi|300909408|ref|ZP_07126869.1| phage terminase family protein large subunit [Lactobacillus reuteri
SD2112]
gi|77745341|gb|ABB02571.1| phage terminase-like protein large subunit [Lactobacillus reuteri]
gi|300893273|gb|EFK86632.1| phage terminase family protein large subunit [Lactobacillus reuteri
SD2112]
Length = 533
Score = 38.3 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 34/298 (11%), Positives = 80/298 (26%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISV 110
WQ + + + + + + + GK+ L A + L L V
Sbjct: 50 DWQEQIIRDLFGILKPNGYR---QFNTAYVEIPKKQGKSELAAAVALLLCCADGEERAEV 106
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q ++ + + + P K ++ + ++ + L D+
Sbjct: 107 YGCAADRQQA-AIVFDVAADMVRMNPALKKRCKILASQKRLIYEPTNSFYQVLSADA--- 162
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
++ F H + + G+ D + +T + I
Sbjct: 163 -YSKHGFNVSGVI-FDELHTQPNRKLYDVMTKGSGDARTQPLYFLITTAGTDEHSICYQV 220
Query: 230 PRRLSGKFYEIFNKPL-----------DDWKRFQIDTRTVEGI-DPSFHEGII------A 271
++ + P +DW ++ + + E +
Sbjct: 221 HQKALDIMEGRKHDPRFYPVIYGADREEDWSDPEVWKKANPSLGVTVAMEKVKDAYNSAK 280
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + R Q+ +QD+ A +P P G D++
Sbjct: 281 ENPAEENTFRQLRLNQWVKQDVRWMPMDKWDACAFPVDPNQLRGRPCYGGLDLSSTTD 338
>gi|77118209|ref|YP_338131.1| maturation protein [Enterobacteria phage K1F]
gi|72527953|gb|AAZ73005.1| maturation protein [Enterobacteria phage K1F]
Length = 575
Score = 38.3 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 17/216 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK-TTLWAEVSKWLSLLP 136
+ + A RGIGK+ + V+W + P + + ++ S+ + +++ + + + L+P
Sbjct: 42 RRFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSIF--IKRIIDLMP 99
Query: 137 -NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----------PDTFV 185
K Q + K + P+
Sbjct: 100 QLKELKPKQGQRDAVISFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSA 159
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
++ + E I L R + + P
Sbjct: 160 TQAARDRLSELVKEFDAILKPGGTIIY--LGTPQNEMTLYRELEGRGYTTTIWPARY-PR 216
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
D R + E + Y +D R
Sbjct: 217 DRKDWQSYGDRLAPMLQAELEEDPESFYWRPTDEVR 252
>gi|326423659|ref|NP_759128.2| hypothetical protein VV1_0116 [Vibrio vulnificus CMCP6]
gi|319999011|gb|AAO08655.2| hypothetical protein VV1_0116 [Vibrio vulnificus CMCP6]
Length = 542
Score = 38.3 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 61/490 (12%), Positives = 110/490 (22%), Gaps = 88/490 (17%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKGAIS--------------AGRGIGKTTLNAWLVLW 100
Q E M D H + + N E+ + + R GKT + L
Sbjct: 28 QKEIMRYADNHGMWHKHVHNVELDPVQLLKMEEMDIHQNTVDFSCRRTGKTAVKEMYFLN 87
Query: 101 LMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAP-WYSDVLH 159
+ +A E Q L + + +S A +Y
Sbjct: 88 WNAINGDQEGGIVAPREAQSLVNLGYHLDAIRRSDILSGFIAYKSGRKQLADTYYEFANR 147
Query: 160 CSLGIDSKHYSTMCRT---YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLT 216
+ S E D ++ + +
Sbjct: 148 SKARAYGIMANVDGGDLTWASLEEVDDLDADRLYGRFLLMMGSS-----RRLGASKTAIN 202
Query: 217 ERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTR---TVEGIDPSFHEGIIARY 273
+ + ++ +D + ++ F + +
Sbjct: 203 KPQIRITGVFKGADTLSGLIDSGEYH------CLPTVDCYLGIELGILNEEFIMSMRKQL 256
Query: 274 GLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALN-------REPCPDPYAPLIMGCDIAE 326
D ++ I I A+ PDPYA IA
Sbjct: 257 PEDE--YIRQLLCINVAAKN--LIWEKYIRYAIQVGAKIGLEPAEPDPYAVYKKRGVIAW 312
Query: 327 EGG------------DNTVVVLRRGPVIEHLFD---WSKTDLRTTNNKISGLVEKYRPDA 371
+ V+ + G +F TD + G +RPD
Sbjct: 313 GYDHTGHGENLASSRSSLVIEEQVGNWSVVIFCKTWHPGTDEGVIRKDLVGFWRYFRPDY 372
Query: 372 IIIDANNTGA--RTCDYLEMLGYHVY-----------RVLGQKRAVDLEFCRNR-RTELH 417
I DA G + D L G + A + ++
Sbjct: 373 AIGDAFGIGLITQVNDDLFAEGLTQIDRRTIGGGESTASTWPEWAFSPLRFEGMAKHQMA 432
Query: 418 VKMADWLEFAS--LINHSG------------LIQNLKSLKSFIVPNTGELAIESKRVKGA 463
+ L L + LK++K V + + + +
Sbjct: 433 QSLRSAYHNRQMVLPYVDDRESDPQLEDYVALPRQLKNIKPSPVKSGSYSSYQMVKKTIG 492
Query: 464 KSTDYSDGLM 473
D D M
Sbjct: 493 D--DLFDAHM 500
>gi|227540804|ref|ZP_03970853.1| type I restriction-modification system restriction subunit
[Corynebacterium glucuronolyticum ATCC 51866]
gi|227183433|gb|EEI64405.1| type I restriction-modification system restriction subunit
[Corynebacterium glucuronolyticum ATCC 51866]
Length = 1004
Score = 38.3 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 35/114 (30%), Gaps = 14/114 (12%)
Query: 8 NPETEQKLFDLM-WSDEIKLS--------FSNFVLHFFPWGEKGTPLEGFSAPRSWQLEF 58
NP E K W + F FV P G + PR QL+
Sbjct: 226 NPTVEGKYKTSYLWEQVLAKDSLLDILHRFVQFVPGKTPEGRPAKSKDKVIFPRFHQLDA 285
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
+ + A ++ N V A G GK+ AWL L + +
Sbjct: 286 VRALVADAKDNGAGKNYLVQHSA-----GSGKSNTIAWLAHHLSNLHDDEQRVV 334
>gi|83308162|emb|CAJ29395.1| gp19 protein [Enterobacteria phage K1F]
Length = 586
Score = 38.3 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 17/216 (7%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK-TTLWAEVSKWLSLLP 136
+ + A RGIGK+ + V+W + P + + ++ S+ + +++ + + + L+P
Sbjct: 53 RRFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSIF--IKRIIDLMP 110
Query: 137 -NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER----------PDTFV 185
K Q + K + P+
Sbjct: 111 QLKELKPKQGQRDAVISFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSA 170
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPL 245
++ + E I L R + + P
Sbjct: 171 TQAARDRLSELVKEFDAILKPGGTIIY--LGTPQNEMTLYRELEGRGYTTTIWPARY-PR 227
Query: 246 DDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTR 281
D R + E + Y +D R
Sbjct: 228 DRKDWQSYGDRLAPMLQAELEEDPESFYWRPTDEVR 263
>gi|262199577|ref|YP_003270786.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
gi|262082924|gb|ACY18893.1| serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Length = 1280
Score = 38.3 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 39/350 (11%), Positives = 98/350 (28%), Gaps = 29/350 (8%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL-- 113
+ + + N + G+GK+ L L + + P + V+ L
Sbjct: 460 RQAIIDAAQELVRQSMRTNTPSL-VTLLGDHGVGKSRLCRELAALVQAQHPEVRVLMLRA 518
Query: 114 -ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTM 172
+ ++ +L L + L + A +D + +DS +
Sbjct: 519 GSPADDEL-DELVQRLDAMLHAMIEPGPL--------SARLLADPAAIAESLDSDEMAPT 569
Query: 173 CRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
+ + +A+I D+ D + + + WI + R
Sbjct: 570 PSAVRKLG-NALRRVAGKLPLAVIVDDVHYASDEVLDALEYAALDAGGTPLWIAVAGHLR 628
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGI--IARYGLDSDVTRVEVCGQFPQ 290
L + + + +R ++ + E + + + T G PQ
Sbjct: 629 LE-RRRPQWGQRAFRHQRIRVPSLDSEAAMRLAAALLRPVEYPPRTALETLARWTGGNPQ 687
Query: 291 QDID---SFIPLNIIEEALNREPCPDPYAPL-IMGCDIAEEGGDNTVVVLRRGPVIEHLF 346
+D + + ++ + + A + + + + + V
Sbjct: 688 ALVDLVQTLRTMGMVRKGRQGDSWYLATAGIERLPASPVGQWMASRALSALAPDVAACAR 747
Query: 347 DWSKTDLRTTNN---KISGLVEKYRPDAIIIDANN-----TGARTCDYLE 388
+ + + + E+ A +D + GA L+
Sbjct: 748 TCAVLGPELSRDELEYVQRAAERAGTAATPLDTDVGLVTLVGAGILQELQ 797
>gi|260576697|ref|ZP_05844683.1| type III restriction enzyme, res subunit [Rhodobacter sp. SW2]
gi|259021064|gb|EEW24374.1| type III restriction enzyme, res subunit [Rhodobacter sp. SW2]
Length = 1022
Score = 38.3 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 43 TPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWL- 101
T + PR + AH + NPE+ + A+ G GKTT+ A L+ W
Sbjct: 140 TEVAPKMGPR------VAKFWAHIKGANEQANPELLRLALKLATGAGKTTVMAMLIAWQT 193
Query: 102 --MSTRPGISVI 111
P
Sbjct: 194 VNAVRHPNSKAF 205
>gi|227543563|ref|ZP_03973612.1| phage terminase family protein large subunit [Lactobacillus reuteri
CF48-3A]
gi|227186403|gb|EEI66474.1| phage terminase family protein large subunit [Lactobacillus reuteri
CF48-3A]
Length = 521
Score = 38.3 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 34/298 (11%), Positives = 80/298 (26%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISV 110
WQ + + + + + + + GK+ L A + L L V
Sbjct: 38 DWQEQIIRDLFGILKPNGYR---QFNTAYVEIPKKQGKSELAAAVALLLCCADGEERAEV 94
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q ++ + + + P K ++ + ++ + L D+
Sbjct: 95 YGCAADRQQA-AIVFDVAADMVRMNPALKKRCKILASQKRLIYEPTNSFYQVLSADA--- 150
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
++ F H + + G+ D + +T + I
Sbjct: 151 -YSKHGFNVSGVI-FDELHTQPNRKLYDVMTKGSGDARTQPLYFLITTAGTDEHSICYQV 208
Query: 230 PRRLSGKFYEIFNKPL-----------DDWKRFQIDTRTVEGI-DPSFHEGII------A 271
++ + P +DW ++ + + E +
Sbjct: 209 HQKALDIMEGRKHDPRFYPVIYGADREEDWSDPEVWKKANPSLGVTVAMEKVKDAYNSAK 268
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + R Q+ +QD+ A +P P G D++
Sbjct: 269 ENPAEENTFRQLRLNQWVKQDVRWMPMDKWDACAFPVDPNQLRGRPCYGGLDLSSTTD 326
>gi|189346975|ref|YP_001943504.1| type III restriction protein res subunit [Chlorobium limicola DSM
245]
gi|189341122|gb|ACD90525.1| type III restriction protein res subunit [Chlorobium limicola DSM
245]
Length = 1025
Score = 38.3 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS 103
H ++ N NPE+ + A+ G GKTT+ A L+ W
Sbjct: 155 DHLEDANGNANPEIMRLALKLATGAGKTTVMAMLIAWQAV 194
>gi|281416211|ref|YP_003347946.1| DNA packaging/maturation protein B [Vibrio phage N4]
gi|237701518|gb|ACR16511.1| DNA packaging/maturation protein B [Vibrio phage N4]
Length = 572
Score = 38.3 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 31/261 (11%), Positives = 69/261 (26%), Gaps = 28/261 (10%)
Query: 25 KLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA 84
K F F++ W P P Q + + A + + + A
Sbjct: 2 KNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAA----------GDERRFILQA 44
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK-TTLWAEVSKWLSLLPNKHWFEM 143
RGIGK+ + V+W + P + + ++ S+ + +++ + + + LLP H +
Sbjct: 45 FRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF--IKRIIDLLPFLHELKP 102
Query: 144 -QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + K + N
Sbjct: 103 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLT----GSRADILIADDVEVPNNSATQA 158
Query: 203 TPDVINLGIL--GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI-DTRTVE 259
D + + + + N ++ T + E W D +E
Sbjct: 159 ARDRLGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARYPKDMNDLE 218
Query: 260 GIDPSFHEGIIARYGLDSDVT 280
+ + +
Sbjct: 219 TYGNRLAPMLKDELMENPEAY 239
>gi|113460642|ref|YP_718708.1| DNA-dependent helicase II [Haemophilus somnus 129PT]
gi|112822685|gb|ABI24774.1| ATP-dependent DNA helicase UvrD [Haemophilus somnus 129PT]
Length = 726
Score = 38.3 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 44/322 (13%), Positives = 92/322 (28%), Gaps = 32/322 (9%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR--PGISVICLA 114
E + ++ N+V P + AG G GKT + + + WL + P S++ +
Sbjct: 5 ELLNDLNEKQRNAVVAPLGNYL---VLAGAGSGKTRVLTYRIAWLSAVEKIPESSIMAVT 61
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+ + + + + + HY+
Sbjct: 62 FTNKAAMEMRHRIEATLARYSHQRVFGMWIGTF----------HSIANRLLRSHYADAGL 111
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ D+ + + + N + P ++
Sbjct: 112 PQDFQILDSEDQLRLVKRLM----KLHQYDEKTFPYKQACWYINNKKEEGL---RPNQIE 164
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ + +K +Q +D + L + +F ID
Sbjct: 165 DNNDRQEREWIKIYKIYQDACDRAGLVDFAELLLRAYELWLKNPHILQYYQQRFQHVLID 224
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLR 354
F N I+ A + +I+G D+ + RG IE++ + K
Sbjct: 225 EFQDTNKIQYAWIKLLAGSQGNVMIVG-------DDDQSIYGWRGAQIENIHRFLK---D 274
Query: 355 TTNNKISGLVEKYRPDAIIIDA 376
KI L + YR I+++
Sbjct: 275 FAKAKIIRLEQNYRSTGNILES 296
>gi|163790240|ref|ZP_02184673.1| phi77 ORF003-like protein, phage terminase, large subunit
[Carnobacterium sp. AT7]
gi|159874515|gb|EDP68586.1| phi77 ORF003-like protein, phage terminase, large subunit
[Carnobacterium sp. AT7]
Length = 552
Score = 38.3 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 41/279 (14%), Positives = 69/279 (24%), Gaps = 20/279 (7%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRP---GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
RG GK L + L + +S R G +V +A SE Q T++ + P + +F
Sbjct: 94 ARGAGKNGLASGLSAYFISPRHNVNGYNVGIVATSEEQATTSVEEVFNAVDDNKPLQKFF 153
Query: 142 EMQSLSL-------HPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP----DTFVGHHNT 190
+ + S+ + Y + G
Sbjct: 154 RHTFTKITSRLNRNWFKYYTSNAKTKDGARLGCIFFDEIHEYKTNDIIEVFTSGFGKRPY 213
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
I V + + + + EI N L +
Sbjct: 214 SRTFYIGTTGFIRDGVYDDLMRRSMDILTGKTDDLSFFPFICKLDDIKEIDNPELWEKAN 273
Query: 251 FQIDTRTVEGIDPSFHEGIIAR----YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEAL 306
E + E + A YG D V+ + N I+ A
Sbjct: 274 PMFHQPMSEYAEILNDEVMSAYKDLAYGGDKIKFIVKRMNFSDIDSQNDVASRNDIKSAN 333
Query: 307 NREPCPDPYAPLIMGCDIAEEGGD-NTVVVLRRGPVIEH 344
P + I D A ++ R
Sbjct: 334 KALPDLKGHKA-IGSLDFASNKDFVAAGLIFRDNDQYYW 371
>gi|156932972|ref|YP_001436888.1| hypothetical protein ESA_00775 [Cronobacter sakazakii ATCC BAA-894]
gi|156531226|gb|ABU76052.1| hypothetical protein ESA_00775 [Cronobacter sakazakii ATCC BAA-894]
Length = 675
Score = 38.3 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P+ Q ++ + AI+A RG GK+ L + L
Sbjct: 174 PQQEQARLLDELLTTTDGV----------TAITAARGRGKSALAGMFIRAL-----PGRA 218
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
+ A S + K++ + P+ ++ +L P W +L
Sbjct: 219 LVTAPSRASAEVIAAHAGEKFVFMAPDALLAALEDGTLAPCDWLVIDEAAAL 270
>gi|171909824|ref|ZP_02925294.1| ABC transporter, ATP-binding protein [Verrucomicrobium spinosum DSM
4136]
Length = 947
Score = 38.0 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 31/271 (11%), Positives = 64/271 (23%), Gaps = 19/271 (7%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLV-----------LWLMSTRPGISVICL 113
+ LN V+ I G G GK+TL L + +
Sbjct: 228 NILNDVSLDVTPCSFVGILGGSGQGKSTLMNALCGVNPASAGEVYINGARLGDPRQMAAS 287
Query: 114 ANSETQLKTTLWAE--VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
+ E V++ ++ + L + +
Sbjct: 288 GIGYVPQDDIVHQELTVTEAITYSAQLKLPSGTPRKAVRDLVEETIDRLGLAEHKEKRIS 347
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
M +R + +++ +SG ++ L ++ +
Sbjct: 348 MLSGGQRKRVSIATELLAKPSVLFLDEPSSGLDPKTEFDLMSLLRRLAGTDCTVICTTHV 407
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSF--HEGIIARYGLDS----DVTRVEVC 285
++ F E + I + G D R E
Sbjct: 408 LGRAYLFDQLLFVHGGHVIFNGTPDEAERYFKVERGLDEIYLKVGGDETRTAAQWRQEFE 467
Query: 286 GQFPQQDIDSFIPLNIIEEALNREPCPDPYA 316
G P+ +++P + P P
Sbjct: 468 GSRPEAKPLAYLPPAQDDPLQQSRPKLGPGW 498
>gi|50287917|ref|XP_446387.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525695|emb|CAG59314.1| unnamed protein product [Candida glabrata]
Length = 1956
Score = 38.0 bits (86), Expect = 3.4, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 39/141 (27%), Gaps = 12/141 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ + G GKT + A L +W PG V+ +A + ++ V W
Sbjct: 1153 VFVGSPTGSGKT-VVAELAMWHAFKEFPGKKVVYIAPMKALVRER----VDDWKKK---- 1203
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ + S + D+ T + + II D
Sbjct: 1204 -ITPVTGDKVVELTGDSLPDPRDVR-DATIVITTPEKFDGISRNWQTRKFVQEVSLIIMD 1261
Query: 199 EASGTPDVINLGILGFLTERN 219
E + ++ N
Sbjct: 1262 EIHLLASDRGPILEMIVSRMN 1282
>gi|94972431|ref|YP_595649.1| hypothetical protein LIC033 [Lawsonia intracellularis PHE/MN1-00]
gi|94731968|emb|CAJ53985.1| hypothetical protein LIC033 [Lawsonia intracellularis PHE/MN1-00]
Length = 276
Score = 38.0 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 75 PEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
P+ AI+A RG K+T+ + + V+W + T ++ +A++ Q + L A + S
Sbjct: 163 PKGQWLAIAAPRGEAKSTMVSLFFVIWAIITYKKHYILLIADTIEQSVSLLEAIKVELTS 222
Query: 134 LLPNKHWFEMQ--SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+ F S+ + + S + RPD +
Sbjct: 223 NPRLQQDFPESTGEGSVWNEGTIITCSNVKVQALSAGKRMRGLRHGAHRPDFYS 276
>gi|68299748|ref|YP_249597.1| DNA packaging protein B [Vibriophage VP4]
gi|66473287|gb|AAY46296.1| DNA packaging protein B [Vibriophage VP4]
Length = 586
Score = 38.0 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 31/261 (11%), Positives = 69/261 (26%), Gaps = 28/261 (10%)
Query: 25 KLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISA 84
K F F++ W P P Q + + A + + + A
Sbjct: 16 KNDFVLFLMVL--WRALNLP-----EPTRCQKDMARKLAA----------GDERRFILQA 58
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK-TTLWAEVSKWLSLLPNKHWFEM 143
RGIGK+ + V+W + P + + ++ S+ + +++ + + + LLP H +
Sbjct: 59 FRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIF--IKRIIDLLPFLHELKP 116
Query: 144 -QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
+ + K + N
Sbjct: 117 RPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLT----GSRADILIADDVEVPNNSATQA 172
Query: 203 TPDVINLGIL--GFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQI-DTRTVE 259
D + + + + N ++ T + E W D +E
Sbjct: 173 ARDRLGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARYPKDMNDLE 232
Query: 260 GIDPSFHEGIIARYGLDSDVT 280
+ + +
Sbjct: 233 TYGNRLAPMLKDELMENPEAY 253
>gi|332880889|ref|ZP_08448559.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332681063|gb|EGJ53990.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 769
Score = 38.0 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 23/65 (35%)
Query: 59 MEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSET 118
+ + V + + G GKT L A ++ L+S P V +A+
Sbjct: 12 LRDYQKNIKRRVFDAWRNHACVMVQMPTGTGKTHLLASVIYDLLSAEPEQCVWIIAHRRE 71
Query: 119 QLKTT 123
++
Sbjct: 72 LVEQI 76
>gi|145297543|ref|YP_001140384.1| hypothetical protein ASA_0464 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142850315|gb|ABO88636.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 688
Score = 38.0 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 39 GEKGTPLEGFSAPRSWQ-----LEFMEVVDAHCLNSVNNPNPEVFKGAISAG-RGIGKTT 92
G+ L ++P+ WQ + + + + + RG GK++
Sbjct: 143 GDPALSLLPPTSPQPWQPIGAERPLSDDQALALPAIQRVLHGHRRRPLVLSADRGRGKSS 202
Query: 93 LNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLS 133
L L+ +P + ++ A S+ + T L+A ++ L
Sbjct: 203 LLGLAAAGLLRQQPDLKIVVTAPSQATVAT-LFAHAARALD 242
>gi|84998946|ref|XP_954194.1| DEAD-box helicase [Theileria annulata]
gi|65305192|emb|CAI73517.1| DEAD-box helicase, putative [Theileria annulata]
Length = 1925
Score = 38.0 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 34/136 (25%), Gaps = 5/136 (3%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
++A G GKT + + L P + +A LK W L K
Sbjct: 1151 VAAPTGSGKTLVAELGLFRLFDKHPDKIAVYIAP----LKALAHERFKDWCKKLHFKKIL 1206
Query: 142 EMQ-SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEA 200
++ S + T + T II DE
Sbjct: 1207 QLTGDTSSNNLDNQLYKFERDELDRYDIVITTPEKWDGISRHWRRKKLVTKVALIILDEL 1266
Query: 201 SGTPDVINLGILGFLT 216
+ I ++
Sbjct: 1267 HLLGESRGAIIESIIS 1282
>gi|228936952|ref|ZP_04099694.1| Terminase large subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228822667|gb|EEM68557.1| Terminase large subunit [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 559
Score = 38.0 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 26/199 (13%), Positives = 52/199 (26%), Gaps = 22/199 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKT-TLNAWLVLWLMSTRPGIS 109
P S Q+ + + K GR K+ +L M+ +S
Sbjct: 71 PHSIQIFVFSNIYGWVHRNTG--LRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMS 128
Query: 110 VICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
+ + ++T+ +W E+ ++ ++ +
Sbjct: 129 EVYIGATKTEQSKIVWNEIKAQMNGC------------------EDLKGKFNIAYGKIEH 170
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTP-DVINLGILGFLTERNANRFWIMTS 228
S D I DE P I ++ R I+T+
Sbjct: 171 LKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITT 230
Query: 229 NPRRLSGKFYEIFNKPLDD 247
LS Y + + +
Sbjct: 231 AGFNLSHPCYRVEYQYVSK 249
>gi|308178069|ref|YP_003917475.1| type I restriction-modification system restriction subunit
[Arthrobacter arilaitensis Re117]
gi|307745532|emb|CBT76504.1| type I restriction-modification system restriction subunit
[Arthrobacter arilaitensis Re117]
Length = 1033
Score = 38.0 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 27/193 (13%), Positives = 54/193 (27%), Gaps = 7/193 (3%)
Query: 86 RGIGKTTLNAWLVLWLMSTRPGISVICLANSET---QLKTTLWAEVSKWLSLLPNKHWFE 142
+G GK+ WL W++ T+ V+ + + Q++ K +
Sbjct: 274 QGSGKSLTMVWLAKWILETQHDARVLVITDRTELDGQIEDGFSGVGEKIVRTQSGADMLA 333
Query: 143 MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASG 202
M + S +P S V D +E + G+ + + DEA
Sbjct: 334 MLNTS-NPPLMCSLVHKFRGTNDGARDKDAEDFANELKTQIPAGYTAKGNIFVFVDEAH- 391
Query: 203 TPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGID 262
+ G + + +I + L G ++ D +G+
Sbjct: 392 --RTQGGKMHGIMKDLLPGAMFIGFTGTPLLKGDKKTSIETFGSFIHTYKFDEAVRDGVV 449
Query: 263 PSFHEGIIARYGL 275
Sbjct: 450 LDLKYEARKVEQE 462
>gi|260582117|ref|ZP_05849911.1| DNA helicase II [Haemophilus influenzae NT127]
gi|260094749|gb|EEW78643.1| DNA helicase II [Haemophilus influenzae NT127]
Length = 727
Score = 38.0 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 45/381 (11%), Positives = 102/381 (26%), Gaps = 36/381 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E ++ ++ +V P + AG G GKT + + WL++ +A
Sbjct: 5 AELLDGLNDKQREAVAAPLGNHL---VLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAV 61
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ T AE+ + KH W + + H+ +
Sbjct: 62 TFT---NKAAAEMRHRIQSTLAKHAQHQLFGM-----WIGTFHSIAHRLLRAHHLDVGLP 113
Query: 176 YSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ D+ + + N + P + + P +
Sbjct: 114 QDFQILDSEDQRRLIKRLLKLHNFDEKAFPPKQACWYINNKKDEGLR--------PNDIE 165
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ + ++ +Q +D + + + +F +D
Sbjct: 166 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 225
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW---SKT 351
F N I+ + +I+G D+ + RG IE++ + K
Sbjct: 226 EFQDTNKIQYKWIKILAGKTGKVMIVG-------DDDQSIYGWRGAQIENIQKFLKDFKA 278
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
+ +I N+ + E + +D
Sbjct: 279 ETIRLEQNYRSTANILNSANKLIANNSDRLGKNLWTEGEKGDPVGIYSAFNELDEAKFV- 337
Query: 412 RRTELHVKMADWLEFASLINH 432
++ DW+E ++
Sbjct: 338 -----ASQIQDWVEHGGKLDD 353
>gi|145641213|ref|ZP_01796793.1| DNA helicase II [Haemophilus influenzae R3021]
gi|145274050|gb|EDK13916.1| DNA helicase II [Haemophilus influenzae 22.4-21]
Length = 726
Score = 38.0 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 45/381 (11%), Positives = 102/381 (26%), Gaps = 36/381 (9%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLAN 115
E ++ ++ +V P + AG G GKT + + WL++ +A
Sbjct: 4 AELLDGLNDKQREAVAAPLGNHL---VLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAV 60
Query: 116 SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+ T AE+ + KH W + + H+ +
Sbjct: 61 TFT---NKAAAEMRHRIQSTLAKHAQHQLFGM-----WIGTFHSIAHRLLRAHHLDVGLP 112
Query: 176 YSEERPDTFVGHHN-TYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLS 234
+ D+ + + N + P + + P +
Sbjct: 113 QDFQILDSEDQRRLIKRLLKLHNFDEKAFPPKQACWYINNKKDEGLR--------PNDIE 164
Query: 235 GKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDID 294
+ + ++ +Q +D + + + +F +D
Sbjct: 165 DFNDRQEREWIKIYQIYQDTCDRAGLVDFAELLIRVYELFEKKPLILQRYQQRFQHILVD 224
Query: 295 SFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW---SKT 351
F N I+ + +I+G D+ + RG IE++ + K
Sbjct: 225 EFQDTNKIQYKWIKILAGKTGKVMIVG-------DDDQSIYGWRGAQIENIQKFLKDFKA 277
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRN 411
+ +I N+ + E + +D
Sbjct: 278 ETIRLEQNYRSTANILNSANKLIANNSDRLGKNLWTEGEKGDPVGIYSAFNELDEAKFV- 336
Query: 412 RRTELHVKMADWLEFASLINH 432
++ DW+E ++
Sbjct: 337 -----ASQIQDWVEHGGKLDD 352
>gi|331271055|ref|YP_004385766.1| hypothetical protein CbC4_4191 [Clostridium botulinum BKT015925]
gi|329127447|gb|AEB77391.1| hypothetical protein CbC4_4191 [Clostridium botulinum BKT015925]
Length = 329
Score = 38.0 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 3/77 (3%)
Query: 64 AHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTT 123
RG GKT L + P I++ A S+ +
Sbjct: 75 DLDQRVFLRCMSRFISTYGVFPRGFGKTMLELMSIYHTCVFFPDITIAMSAQSKENASSI 134
Query: 124 L---WAEVSKWLSLLPN 137
E+ KW LL N
Sbjct: 135 SEEKHKEILKWFPLLKN 151
>gi|317034954|ref|XP_001400800.2| DEAD/DEAH box helicase [Aspergillus niger CBS 513.88]
Length = 1876
Score = 38.0 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 24/200 (12%), Positives = 57/200 (28%), Gaps = 22/200 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ E ++ +DA + A GKT ++ + + ++ + +
Sbjct: 810 PDRWQREILDQIDA------------KASLFVVAPTSAGKTFISFYAMKQVLESSDDGVL 857
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ +A ++ + +++ + ++H + + + + +
Sbjct: 858 VYVAPTKALVNQIAAEVQARFSKNYKHAGKSVW---AIHTRDYRINNPTSCQILITVPHI 914
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEAS--GTPDVINLGILGFLTERNANRFWIMT- 227
+ ++ II DE G D + L T
Sbjct: 915 LQIMLLAPSNAKSWAS----RIQRIIFDEIHCIGQSDDGVVWEQLLLLAPCPIIALSATV 970
Query: 228 SNPRRLSGKFYEIFNKPLDD 247
NP + N D
Sbjct: 971 GNPEEFNDWLRLTQNANGHD 990
>gi|218890312|ref|YP_002439176.1| phage uncharacterized protein [Pseudomonas aeruginosa LESB58]
gi|218770535|emb|CAW26300.1| phage uncharacterized protein [Pseudomonas aeruginosa LESB58]
Length = 549
Score = 38.0 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 29/246 (11%), Positives = 60/246 (24%), Gaps = 9/246 (3%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANS 116
+ + +P+ AI+A RG K+TL + V+W + T + + ++
Sbjct: 63 ALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDA 122
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFE--MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
Q T L A ++ F + + +
Sbjct: 123 FEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKRMRGL 182
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---LTERNANRFWIMTSNPR 231
P N + D + + L + I+
Sbjct: 183 ---RHGPHRPDLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTIL 239
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ PL ++F+ +D + D + +
Sbjct: 240 HYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWEKWEELLLNSDDEGAAALAFYQERAAA 299
Query: 292 DIDSFI 297
D I
Sbjct: 300 MEDGAI 305
>gi|134081473|emb|CAK46486.1| unnamed protein product [Aspergillus niger]
Length = 1863
Score = 38.0 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 24/200 (12%), Positives = 57/200 (28%), Gaps = 22/200 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P WQ E ++ +DA + A GKT ++ + + ++ + +
Sbjct: 797 PDRWQREILDQIDA------------KASLFVVAPTSAGKTFISFYAMKQVLESSDDGVL 844
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ +A ++ + +++ + ++H + + + + +
Sbjct: 845 VYVAPTKALVNQIAAEVQARFSKNYKHAGKSVW---AIHTRDYRINNPTSCQILITVPHI 901
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEAS--GTPDVINLGILGFLTERNANRFWIMT- 227
+ ++ II DE G D + L T
Sbjct: 902 LQIMLLAPSNAKSWAS----RIQRIIFDEIHCIGQSDDGVVWEQLLLLAPCPIIALSATV 957
Query: 228 SNPRRLSGKFYEIFNKPLDD 247
NP + N D
Sbjct: 958 GNPEEFNDWLRLTQNANGHD 977
>gi|291550138|emb|CBL26400.1| Phage terminase-like protein, large subunit [Ruminococcus torques
L2-14]
Length = 557
Score = 38.0 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 41/312 (13%), Positives = 82/312 (26%), Gaps = 32/312 (10%)
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGIS---VICLANSETQLKTTLWAEV 128
+ P K I GRG GK LV + + G+ V +ANSE+Q+K T
Sbjct: 79 DDIPVFSKFFIKEGRGNGKDGFIVPLVNFFQTPLYGVKNYHVEIVANSESQVKDTFKVAY 138
Query: 129 SKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY--SEERPDTFVG 186
K F + + S++ + + +K + +
Sbjct: 139 DMLHDNPKFKGKFSVTKELITNLATGSEMKYNTSNAKTKDGKRTGCLVLNEIHAYENYDQ 198
Query: 187 HHNTYGMA--------IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
+ I D I E ++ P
Sbjct: 199 INVFESSFGKVKHSREFIITTDGYVRDGPLDEISAMCAEILETGENLLGYFPFICEIDDM 258
Query: 239 EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS--DVTRVEVCGQFPQQDIDSF 296
+ + P + W + + + + + S + + +++ ++
Sbjct: 259 KEVDDP-EAWHKANPSMEYMPILANQIMHDYLEMKKIPSKRAEFITKRMDRSARKEEETV 317
Query: 297 IPL-------------NIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVL---RRGP 340
+E + R ++G D A+ + +L G
Sbjct: 318 TTWQNVLRACYEGETMEELERKIPRITLDTRGQAAVIGIDYADVRDFASAGILTKTDDGE 377
Query: 341 VIEHLFDWSKTD 352
I W D
Sbjct: 378 WIWRQHTWICAD 389
>gi|147678465|ref|YP_001212680.1| hypothetical protein PTH_2130 [Pelotomaculum thermopropionicum SI]
gi|146274562|dbj|BAF60311.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 564
Score = 38.0 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 31/117 (26%), Gaps = 7/117 (5%)
Query: 333 VVVLRRGPV-IEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANN---TGARTCDYLE 388
+ R G + SK +I +E + + + +
Sbjct: 263 CIAARYGGDEFTVIVPGSKERAMEIAEEIRQAIESQPFEGAAVQPKGKITVSLGVATFPK 322
Query: 389 MLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGL---IQNLKSL 442
+ A+ + + +L+ + D L L I+ L ++
Sbjct: 323 HGSTPKELIRSADEAMYKAKYQGNKAQLYFSVMDDLREGIAETERDLFNSIKTLITI 379
>gi|21910864|ref|NP_665132.1| putative terminase large subunit - phage associated [Streptococcus
pyogenes MGAS315]
gi|28876410|ref|NP_795631.1| putative terminase large subunit [Streptococcus pyogenes phage
315.5]
gi|28895446|ref|NP_801796.1| terminase large subunit [Streptococcus pyogenes SSI-1]
gi|21905070|gb|AAM79935.1| putative terminase large subunit - phage-associated [Streptococcus
pyogenes MGAS315]
gi|28810692|dbj|BAC63629.1| terminase large subunit (G2P) hypothetical protein, phage SPP1
[Streptococcus pyogenes SSI-1]
Length = 96
Score = 38.0 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVS 129
P++ A GRG GK++ A+++ L+ P ++ +C+ ++ L+ +++ ++
Sbjct: 31 PQILNIACKGGRGSGKSSNIAFIISRLIIQYP-VNAVCIRKTDNTLEQSVYEQIK 84
>gi|304310805|ref|YP_003810403.1| Probable type I restriction-modification system restriction subunit
[gamma proteobacterium HdN1]
gi|301796538|emb|CBL44749.1| Probable type I restriction-modification system restriction subunit
[gamma proteobacterium HdN1]
Length = 1017
Score = 38.0 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 56/420 (13%), Positives = 113/420 (26%), Gaps = 35/420 (8%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSA--PRSWQLEFMEVVDAHCL 67
+T ++ + I +FV G PL + PR QL+ + + H
Sbjct: 263 KTAYLWEEVFTKESIANIIQHFVRLD---GSTKDPLPKRTLFFPRYHQLDVVRKLVDHAS 319
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL---KTTL 124
N + A G GK+ W L+ T P + S Q +
Sbjct: 320 NQGVGHTYLIQHSA-----GSGKSNSITWAAYQLIETYPASQQVANGRSIEQPLFDSVIV 374
Query: 125 WAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+ L + + ++ S L +L K T + + D
Sbjct: 375 VTDRRLLDKQLRDNIKEFSEVKNIVAPAHKSSELKSALENGKKIIITTIQKF-PFIVDGI 433
Query: 185 VGHHNTYGMAIINDEAS----GTPDVINLGILGFLTERNANRFWIMTSNPRRLSG-KFYE 239
+ A+I DEA GT ++G E + + R++ G Y
Sbjct: 434 EDL-SDKRFAVIIDEAHSSQSGTAHDNMNRVMGQDEEEDDQDKILKAMKSRKMRGNASYL 492
Query: 240 IFNKPLDDWKRFQID-TRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIP 298
F + + + P + ++V + I
Sbjct: 493 AFTATPKNTTLEKFGEKQEDGTFTPFHLYSMKQAIEEG---FILDVLANYTTYKSYYEIE 549
Query: 299 LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP---VIEHLFDWSKTDLRT 355
+I E L + +++ D ++ V+ K
Sbjct: 550 KSIAENPEFDTKKAQKK--LRTYVERSQQTIDTKAEIMLEHFIPQVVNAKKLKGKAKGMV 607
Query: 356 TNNKISGLVEKYRPDAIIIDANN------TGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
I + ++ +++A ++ + Y + G + +
Sbjct: 608 VTQNIETAIRYHKAITRLLEAKGNPFKALVAFSGTKEVDGIEYTEAEINGFSESDTKDKF 667
>gi|300786932|ref|YP_003767223.1| hypothetical protein AMED_5056 [Amycolatopsis mediterranei U32]
gi|299796446|gb|ADJ46821.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length = 861
Score = 38.0 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
WQ +E + A+ RG GK+ L A W + +
Sbjct: 105 QWQPRPLEEKA---VREALGRRGRTALVALPGARGAGKSQLAAGYARWCLDQGYDLVAWI 161
Query: 113 LANS 116
A S
Sbjct: 162 NAES 165
>gi|300764712|ref|ZP_07074703.1| hypothetical protein LMHG_11063 [Listeria monocytogenes FSL N1-017]
gi|300514598|gb|EFK41654.1| hypothetical protein LMHG_11063 [Listeria monocytogenes FSL N1-017]
Length = 535
Score = 38.0 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 37/304 (12%), Positives = 83/304 (27%), Gaps = 28/304 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + I + +GK+ L A + L L V
Sbjct: 52 DWQEQIIRDLFGTVKTNGYR---QFNTAYIEIPKKMGKSELAAAVALLLTCGDGEERAEV 108
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q + ++ + + + P + ++ L+ + + ++ YS
Sbjct: 109 YGCAADRQQA-SIVFEVAADMVRMCPALNK-RVKILASQKRIVFKPTNSFYQVLSAEAYS 166
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN---------AN 221
F H + + G+ D + +T +
Sbjct: 167 KHGFNI---HGVVFDELHTQPNRKLFDVMTKGSGDARTQPLYFLITTAGTDTNSICYETH 223
Query: 222 RFWIMTSNPRRLSGKFY--EIFNKPLDDWKRFQIDTRTVE------GIDPSFHE-GIIAR 272
+ + + R+ FY DDW ++ + GID +
Sbjct: 224 QKALDIIDGRKHDSTFYPVIYGADESDDWTDPKVWKKANPSLGITVGIDKVKAACESAKQ 283
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNT 332
+ + R Q+ +Q I G D++ +
Sbjct: 284 NPAEENSFRQLRLNQWVKQAIRWMPMDKWDSCGFKVNEKSLEGRVCYGGLDLSSTTDITS 343
Query: 333 VVVL 336
V++
Sbjct: 344 FVLV 347
>gi|119953651|ref|YP_950450.1| hypothetical protein DMS3-26 [Pseudomonas phage DMS3]
gi|110294469|gb|ABG66680.1| hypothetical protein DMS3-26 [Pseudomonas phage DMS3]
Length = 550
Score = 38.0 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 29/246 (11%), Positives = 60/246 (24%), Gaps = 9/246 (3%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANS 116
+ + +P+ AI+A RG K+TL + V+W + T + + ++
Sbjct: 65 ALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDA 124
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFE--MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
Q T L A ++ F + + +
Sbjct: 125 FEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKRMRGL 184
Query: 175 TYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---LTERNANRFWIMTSNPR 231
P N + D + + L + I+
Sbjct: 185 ---RHGPHRPDLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTIL 241
Query: 232 RLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQ 291
+ PL ++F+ +D + D + +
Sbjct: 242 HYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWEKWEELLLNSDDEGAAALAFYQERAAA 301
Query: 292 DIDSFI 297
D I
Sbjct: 302 MEDGAI 307
>gi|115734748|ref|XP_001198040.1| PREDICTED: similar to ENSANGP00000021394, partial
[Strongylocentrotus purpuratus]
gi|115901713|ref|XP_782819.2| PREDICTED: similar to ENSANGP00000021394, partial
[Strongylocentrotus purpuratus]
Length = 784
Score = 38.0 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 6/103 (5%)
Query: 14 KLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNP 73
K+ D + S F +FV H W K P P ++Q+ FM+ + + + +
Sbjct: 522 KIVDKVISVPEGDFFFDFVRHLTDWIRKARPNRDGGVPLTYQVFFMKKLWTNTVPGKDRN 581
Query: 74 NPEVFKGA------ISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
+F + GK L
Sbjct: 582 ADIIFHYHQELPKLLRGYHKCGKDEAAQLAALQYRVRFDNDKT 624
>gi|332666805|ref|YP_004449593.1| Restriction endonuclease, type I, EcoRI, R subunit/Type III
[Haliscomenobacter hydrossis DSM 1100]
gi|332335619|gb|AEE52720.1| Restriction endonuclease, type I, EcoRI, R subunit/Type III
[Haliscomenobacter hydrossis DSM 1100]
Length = 1031
Score = 38.0 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 40/316 (12%), Positives = 88/316 (27%), Gaps = 41/316 (12%)
Query: 10 ETEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSA--PRSWQLEFMEVVDAHCL 67
+T D++ + +FV G+ PL + PR QL+ + + H
Sbjct: 257 KTAYLWEDILTRQSVANIIQHFVRFD---GKDNDPLAKKTLYFPRYHQLDVVRRLVGHAS 313
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP----------------GISVI 111
+ A G GK+ W L+ T P ++
Sbjct: 314 KHGVGHTYLIQHSA-----GSGKSNSITWAAYQLIETYPESETLPGSKGQDKPLFDSVIV 368
Query: 112 CL--ANSETQLKTTL--WAEVSKWLS--------LLPNKHWFEMQSLSLHPAPWYSDVLH 159
+ QL+ + ++EV ++ + ++ ++ P+ D +
Sbjct: 369 VTDRRLLDKQLRENIREFSEVKNIVAPAYSSADLKSALEGGKKIIITTIQKFPFIIDGIA 428
Query: 160 CSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + A +E P L + R
Sbjct: 429 DLSYKRFAVIIDEAHSSQSGTAAGKMNQ-AMGNSASSTEEEDEDPQDKILEAMRSRKMRG 487
Query: 220 ANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDV 279
+ T+ P+ + + + +P + F + + I+ F ++A Y
Sbjct: 488 NASYLAFTATPKNATLERFGT-RQPDGKYIPFDL-YSMKQAIEEGFILDVLANYTTYKSY 545
Query: 280 TRVEVCGQFPQQDIDS 295
+E +
Sbjct: 546 YEIEKSIEENPLFDTV 561
>gi|159044263|ref|YP_001533057.1| ABC-transporter ATP-binding protein [Dinoroseobacter shibae DFL 12]
gi|157912023|gb|ABV93456.1| ABC-transporter ATP-binding protein [Dinoroseobacter shibae DFL 12]
Length = 614
Score = 38.0 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 52/370 (14%), Positives = 92/370 (24%), Gaps = 38/370 (10%)
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKT 122
++ + A+ G GK+TL + P + A +
Sbjct: 18 GDPVFAGLDLVIQPGDRVALVGRNGSGKSTLMKVMA---GLVEPDTGQVIAAP----GTS 70
Query: 123 TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPD 182
+ E LS P F +L W D+ L +D + R
Sbjct: 71 IGYMEQDPDLSGFPTLGDFARAALDP-SESWRIDMAAEGLKLDLDIATDAASGGERRRAA 129
Query: 183 TFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMT-----SNPRRLSGKF 237
+ ++++ + + LT A I S R +
Sbjct: 130 LARLLAEAPHLMLLDEPTNHLDIEAISWLEDHLTSTRAAFVLISHDRAFLSALTRATLWI 189
Query: 238 Y----EIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG----------LDSDVTRVE 283
+ D++ ++ T E + + I + RV
Sbjct: 190 DRGMVRRQERGFSDFEAWRDKTWEEEDLARHKLDRKIKAEARWAVEGISARRKRNQGRVR 249
Query: 284 VCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTV-----VVLRR 338
G+ QQ D + AL E +I I + GD T+ + + R
Sbjct: 250 ALGELRQQRADMIRRQGTADMAL--EAGRSSGKRVIEARGITKSFGDRTILRPFDLRVLR 307
Query: 339 GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVL 398
G I + + + N D G L
Sbjct: 308 GDRIAFVGPNGAGKTTLLKMLTGEIAPDDGTVTL---GTNLEIAVFDQ-RREGLDPDASL 363
Query: 399 GQKRAVDLEF 408
+ D E
Sbjct: 364 WENLTGDPEM 373
>gi|91199577|emb|CAI77931.1| putative helicase [Streptomyces ambofaciens ATCC 23877]
gi|96771624|emb|CAI78205.1| putative helicase [Streptomyces ambofaciens ATCC 23877]
gi|117164172|emb|CAJ87711.1| putative helicase [Streptomyces ambofaciens ATCC 23877]
gi|126347284|emb|CAJ88989.1| putative helicase [Streptomyces ambofaciens ATCC 23877]
Length = 886
Score = 38.0 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 52 RSWQLEFMEVVDAHC-LNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
R Q+E + + ++ ++ PE +G I + G GKT + A L G +
Sbjct: 5 REHQVEQKQSIREWVGFSARSSVPPEGMRGTIVSATGSGKTIMAAASALE---CFAGGRI 61
Query: 111 ICLANSETQL 120
+ + L
Sbjct: 62 LVTVPTLDLL 71
>gi|52425423|ref|YP_088560.1| DNA-dependent helicase II [Mannheimia succiniciproducens MBEL55E]
gi|52307475|gb|AAU37975.1| UvrD protein [Mannheimia succiniciproducens MBEL55E]
Length = 727
Score = 38.0 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 43/309 (13%), Positives = 92/309 (29%), Gaps = 27/309 (8%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
E ++ ++ +V P + AG G GKT + + WL++ +A +
Sbjct: 6 ELLDGLNDKQREAVAAPLGNYL---VLAGAGSGKTRVLTHRIAWLIAVEGISEGSIMAVT 62
Query: 117 ETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTY 176
T AE+ + + ++H S W + + HY
Sbjct: 63 FT---NKAAAEMRQRIESTLSQH-----SSRRLFGMWVGTFHSIAHRLLRAHYLDANLPQ 114
Query: 177 SEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGK 236
+ D+ + + + + N + P ++
Sbjct: 115 DFQILDSED----QLRLLKRLLKLHNYDEKMFPAKQACWYINNKKDDGL---RPHQIDDN 167
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF 296
+ + ++ ++ +Q +D + L V +F Q +D F
Sbjct: 168 NDKQEREWINIYRIYQDTCDRAGLVDFAEILLRAYELFLKKPVILQRYRQRFQQILVDEF 227
Query: 297 IPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTT 356
N I+ A R + +I+G D+ + RG +E++ + D
Sbjct: 228 QDTNKIQYAWIRLLAGETGNVMIVG-------DDDQSIYGWRGAQVENIQRF--LDDFHK 278
Query: 357 NNKISGLVE 365
I
Sbjct: 279 AKTIRLEQN 287
>gi|331090179|ref|ZP_08339067.1| phage terminase [Lachnospiraceae bacterium 3_1_46FAA]
gi|330402125|gb|EGG81697.1| phage terminase [Lachnospiraceae bacterium 3_1_46FAA]
Length = 533
Score = 38.0 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 46/403 (11%), Positives = 96/403 (23%), Gaps = 69/403 (17%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + I + GK+ L A + L L+ V
Sbjct: 50 DWQEQIIRDLFGVLKPNGYR---QFNTAYIEIPKKQGKSELAAAVALLLLCGDGEERAEV 106
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q K ++ + P ++ ++ + L D
Sbjct: 107 YGCAADRNQAK-IVFDVAVDMVRFCPALSKRVKILESQKKITYLPTNSSYQVLSAD---- 161
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA--------- 220
++ F H + + G+ D + +T
Sbjct: 162 VANKHGFNTHGVI-FDELHTQPNRKLFDVMLQGSGDARMQPLYFLITTAGNDTNSICYEV 220
Query: 221 NRFWIMTSNPRRLSGKFYE--IFNKPLDDWKRFQIDTRTVEGI--------DPSFHEGII 270
++ I + R++ FY +DW ++ + + + E
Sbjct: 221 HQKAIDIAEGRKVDPTFYSVIYGAAEDEDWTDPEVWKKANPSLGITVGIDKVKAACESAQ 280
Query: 271 ARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG- 329
G + R Q+ +Q + A G D++
Sbjct: 281 QNPGE-ENAFRQLRLNQWVKQSVRWMPMEKWDVCAFPVSEDDLEGRICYGGLDLSSTTDI 339
Query: 330 -----------------------------------DNTVVVLRRGPVIEHLFDWSKTDLR 354
D+ L + + +
Sbjct: 340 TAFVLVFPPLDEDDKYYVLPYFWIPEETLDLRVRRDHVPYDLWERQGVLMTTEGNVVHYG 399
Query: 355 TTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRV 397
I L E++ I D + LE +G+ V
Sbjct: 400 YIEKFIEQLGERFNIREIAFDRWGA-VQMVQNLEGMGFTVVPF 441
>gi|57234156|ref|YP_181803.1| terminase, large subunit, putative [Dehalococcoides ethenogenes
195]
gi|57224604|gb|AAW39661.1| terminase, large subunit, putative [Dehalococcoides ethenogenes
195]
Length = 535
Score = 38.0 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 40/305 (13%), Positives = 80/305 (26%), Gaps = 30/305 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + I + +GK+ L A + L L V
Sbjct: 52 DWQERIIRDLFGTLKPNGYR---QFNTAYIEIPKKMGKSELAAAVALLLCCGDGEERAEV 108
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q T ++ + + + P + ++ L+ Y + ++ YS
Sbjct: 109 YGCAADRQQA-TIVFDVAADMVRMCPALNR-RVKILASQKRIIYEPTNSFYQVLSAEAYS 166
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
F H + + G+ D + +T + I
Sbjct: 167 KHGFNI---HGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGNDTNTICYEVH 223
Query: 231 RRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVE------GIDPSFH--EGIIA 271
++ P +DW ++ + GID E
Sbjct: 224 QKAQDILDGRKVDPTFYPVIYGADTSEDWTDPEVWKKANPSLGITVGIDKVEAACESAKQ 283
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G + R Q+ +Q I A G D++
Sbjct: 284 NPGE-ENSFRQLRLNQWVKQAIRWMPMEKWDACAFPVNEDDLEGRVCYGGLDLSSTTDIT 342
Query: 332 TVVVL 336
+ V++
Sbjct: 343 SFVLV 347
>gi|16804339|ref|NP_465824.1| putative terminase large subunit from bacteriophage A118 [Listeria
monocytogenes EGD-e]
gi|16411770|emb|CAD00378.1| putative terminase large subunit from Bacteriophage A118 [Listeria
monocytogenes EGD-e]
Length = 443
Score = 38.0 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 43/366 (11%), Positives = 95/366 (25%), Gaps = 49/366 (13%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GR K+++ + ++ P +++CL L +++ ++ L +
Sbjct: 36 IIAKGGRSSMKSSVISLKLVEKKMANPQSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 95
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH---NTYGMAII 196
F+ + I K + T + P
Sbjct: 96 QFKFGKSP--------------MEIIHKEWGTGFYFSGCDDPAKLKSMKIPVGYVSDLWF 141
Query: 197 NDEASGTPDVINLGILGFLTER----NANRFWIMTSNPRRLSGKF---YEIFNKPLDDWK 249
+ A + + M+ NP R ++ Y + DD+
Sbjct: 142 EELAEFSGVTDIDVVEDTFIREDLPDGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYL 201
Query: 250 RFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----------I 297
E + + I D D R G+ + + I
Sbjct: 202 IHHTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPLKAI 261
Query: 298 PLN----IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDL 353
P + +I+ A++ L G V++L K
Sbjct: 262 PADDRLILIDFAIDTGHQVSATTYLSFGLTAKR-----NVILLNTYYYSPANQVVKKAPS 316
Query: 354 RTTNNKISGLVEKYRPDAIIID----ANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFC 409
+ + + +D + G Y + G ++ V K+ ++F
Sbjct: 317 EYSKELRDFMTKVVGNYNTNVDMQTVDSAEGGLRNQYYKDYGVSLHPVAKGKKVDMIDFV 376
Query: 410 RNRRTE 415
+ +
Sbjct: 377 CDLLAQ 382
>gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
Length = 411
Score = 38.0 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 42/286 (14%), Positives = 77/286 (26%), Gaps = 43/286 (15%)
Query: 47 GFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP 106
G+ P Q E + SA G GKT A L + P
Sbjct: 22 GYDRPTQIQAEAIPQALD------------GRDVLASAPTGTGKTAAFALPALQFLQDFP 69
Query: 107 -----GISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
V+ L + A+ ++ L+ N + F + +
Sbjct: 70 RRKPGPARVLILTPTRELAMQV--ADQARALAKHTNLNIFTITGGVQYQEHADILATTQD 127
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
+ +T R + F +I DEA D+ + L+
Sbjct: 128 IV-----VATPGRLMEYIEAERFD---CRAIEWLILDEADRMLDMGFGPTVDRLSSECRW 179
Query: 222 RF----WIMTSNPRRLSGKFYEIFNKP---------LDDWKRFQIDTRTVEGIDPSF-HE 267
R + T + + G ++ P + K Q R + +
Sbjct: 180 RKQTLLFSATLEGKGVEGFTADLLKDPAEIDAEPSRRERKKIAQWYHRADDMTHKLELLK 239
Query: 268 GIIARYGLDSDVT--RVEVCGQFPQQDIDSFIPLNIIEEALNREPC 311
I+ S V E + + + IP I+ + ++
Sbjct: 240 KILTEQAERSIVFLKTRERLAELRTELEKAQIPCAWIQGEMPQDRR 285
>gi|110632585|ref|YP_672793.1| phage uncharacterized protein [Mesorhizobium sp. BNC1]
gi|110283569|gb|ABG61628.1| phage uncharacterized protein [Chelativorans sp. BNC1]
Length = 488
Score = 38.0 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 42/420 (10%), Positives = 86/420 (20%), Gaps = 53/420 (12%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSE 117
++ H E+ + I+ GK+ L + R + A
Sbjct: 34 HHRLIARHLEAV---ERGEIKRLMITMPPRHGKSMLASEFFPAWYLGRNPDHYVVTATYA 90
Query: 118 TQLKTTLWAEVSKWLSLLPNKHWFE--MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT 175
+L +V + + F + A +
Sbjct: 91 QELADDFGRKVKNQIEDDYFRAVFPGVGLADDSKSAKRFHIDGQFGGYEHGTTQRGAFYA 150
Query: 176 YSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR--- 232
P T G H + +I+D D + I + + + R
Sbjct: 151 VGVGGPLTGRGAH----LLLIDDPVKNREDAESEVIRKKTKDWYTSTAYTRLMPGGRIVI 206
Query: 233 --LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYG----------LDSDVT 280
++ L + + I +Y L
Sbjct: 207 IQTRWHEDDLAGWLLSEHGHENWTVLDLPAISDDGEALWPEQYDIEALERIKRALPPRDW 266
Query: 281 RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGP 340
+ + D F + + P +++ D V
Sbjct: 267 SALYQQRPSPETGDYF-KREWV----HTVDKLPPRDQMLIYGG-----SDYAVTADGGDF 316
Query: 341 VIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID-----------------ANNTGART 383
+ + + G D + G
Sbjct: 317 TVHVVIGLDPEGRMYLLDLWRGQASSDVWVEAFCDLVLKWKPVGWAEETGQIKSGVGPFL 376
Query: 384 CDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLK 443
+ +V R R ++ R + + + S LI L S
Sbjct: 377 VKRMLERAAYVARESFATRGDKAIRAQSIRGRMAMNGLYVHKD--APFLSDLISELMSFP 434
>gi|169786958|ref|YP_001708770.1| hypothetical protein p3ABAYE0092 [Acinetobacter baumannii AYE]
gi|293611291|ref|ZP_06693588.1| predicted protein [Acinetobacter sp. SH024]
gi|169147119|emb|CAM84782.1| hypothetical protein p3ABAYE0092 [Acinetobacter baumannii AYE]
gi|292826302|gb|EFF84670.1| predicted protein [Acinetobacter sp. SH024]
Length = 177
Score = 38.0 bits (86), Expect = 4.1, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 30/140 (21%), Gaps = 27/140 (19%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISV------ICLANSETQLKTTLWAEVSKWLSLLPNK 138
GR GKT L + +V A + Q K W + + +
Sbjct: 43 GRRFGKTFLAKAEMRRAARLAAKWNVSVEDEIWYAAPTFKQAKRVFWKRLKQAIPASWRA 102
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
S+ D + + +I D
Sbjct: 103 GKPNEIECSITLR--------------------SGHIIRVVGLDNYDDLRGSGLFFLIID 142
Query: 199 EASGTP-DVINLGILGFLTE 217
E + + L+
Sbjct: 143 EWADCKWVAWEEVLRPMLST 162
>gi|255084417|ref|XP_002508783.1| predicted protein [Micromonas sp. RCC299]
gi|226524060|gb|ACO70041.1| predicted protein [Micromonas sp. RCC299]
Length = 943
Score = 38.0 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 10/134 (7%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
A++A RG GK+ + + ++ + S LKT + + K + K
Sbjct: 276 VALTAARGRGKSAAM-GIAVAGAVAMGYANIFVTSPSPENLKT-FFQFILKGFDAMEYKE 333
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + ++ ++ + ER + ++ DE
Sbjct: 334 HLDYDIVESSNPAFGKAIVRINVHRAHRQTIQYILPQHAERASSAE--------LLVIDE 385
Query: 200 ASGTPDVINLGILG 213
A+ P +LG
Sbjct: 386 AAAIPLPTVQALLG 399
>gi|46205020|ref|ZP_00209667.1| COG0495: Leucyl-tRNA synthetase [Magnetospirillum magnetotacticum
MS-1]
Length = 231
Score = 38.0 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 26/186 (13%), Positives = 45/186 (24%), Gaps = 27/186 (14%)
Query: 55 QLEFMEVVDAHCLNSVNNPNPEVFKG-AISAGRGIGKTTLNAWLVLWLMS------TRPG 107
QL +E H + P P + A+ GRG GKT A V L P
Sbjct: 12 QLRLLEADWLHRARADQLPPPGHWTTWAVIGGRGSGKTRTGAEWVRGLALGDPVFTDAPV 71
Query: 108 ISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSK 167
+ + + ++ + L P + +
Sbjct: 72 GRIALIGETFADVRDVM-----------------IEGPSGLLALPRLGGAVPVWQPSRRR 114
Query: 168 HYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPD---VINLGILGFLTERNANRFW 224
+ A +DE + + ++ G R+
Sbjct: 115 VVFGNGAVALAFSAEEPDSLRGPQFGAAWSDEVAKWREAEAAYDMIQFGLRLGRHPRGLV 174
Query: 225 IMTSNP 230
T P
Sbjct: 175 TTTPRP 180
>gi|307298971|ref|ZP_07578773.1| chromosomal replication initiator protein DnaA [Thermotogales
bacterium mesG1.Ag.4.2]
gi|306915396|gb|EFN45781.1| chromosomal replication initiator protein DnaA [Thermotogales
bacterium mesG1.Ag.4.2]
Length = 447
Score = 38.0 bits (86), Expect = 4.3, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 38/138 (27%), Gaps = 8/138 (5%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANS 116
+ + V + NP + G G+GKT L + MS P V+ + +
Sbjct: 120 KALYEVALDVTQNPGKYNPFF----VYGGVGLGKTHLLQAIAQETMSNFPDKKVLYITSE 175
Query: 117 E---TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS-KHYSTM 172
+ +++ + K+ K + +
Sbjct: 176 QFMNDMIQSIKENNIQKFRDHYRKKSDILLIDDIQFLIGKKGVQNEFFHSFNELHDSGKQ 235
Query: 173 CRTYSEERPDTFVGHHNT 190
S+ P+ H+
Sbjct: 236 LIICSDRNPEELETFHSR 253
>gi|258545084|ref|ZP_05705318.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826]
gi|258519661|gb|EEV88520.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826]
Length = 1287
Score = 38.0 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 29/212 (13%), Positives = 57/212 (26%), Gaps = 9/212 (4%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMST--RPGISVICLANSETQLKTTLWAEVSKWL 132
P + I A G GKT ++L L+ P +I + + V K L
Sbjct: 14 PLEGRALIEASAGTGKTWTLTGIILRLLIEGGYPPREIIATTFTRKAAAE-MQQRVHKRL 72
Query: 133 SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYG 192
L + L +D + +D + + V H G
Sbjct: 73 HALRENLKAIA-ARYLAEETVLNDDDGLATRLDDIIGGSGGDLINRHLILNAVAKHGLDG 131
Query: 193 MAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF- 251
+ I ++ +G + + + + N P +
Sbjct: 132 LIAIFSRVESLQARLDELFIGTIDSLCQR-WLAEFALETGNDERLQINENSPALEETIHD 190
Query: 252 ---QIDTRTVEGIDPSFHEGIIARYGLDSDVT 280
++ + +F + + DSD
Sbjct: 191 TLRRLLHENHQHDPETFAQMLADGAYHDSDAY 222
>gi|307307908|ref|ZP_07587633.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C]
gi|306901524|gb|EFN32127.1| AAA ATPase central domain protein [Sinorhizobium meliloti BL225C]
Length = 623
Score = 37.6 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 51/175 (29%), Gaps = 13/175 (7%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
W + LEG+ R W + + + +S G GKT + L
Sbjct: 189 WEPRVEELEGYGEARDWAADLVVDLADW-GAGTLAWRDVDAGLLLSGPPGTGKTLFASAL 247
Query: 98 VLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDV 157
G I ++++ Q K L + + + L + S
Sbjct: 248 A-----RSCGAKFIGTSSAQWQSKGHLGDMLGAMRKS--FREAADAAPSVLFIDEFDSIG 300
Query: 158 LHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGIL 212
+ D+ YS E D G +I AS PD I+ +
Sbjct: 301 DRRTFRGDNASYSLQVVNALLELLDGSTGREG-----VIVIAASNFPDHIDPALR 350
>gi|310794120|gb|EFQ29581.1| kinesin light chain [Glomerella graminicola M1.001]
Length = 656
Score = 37.6 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 46/163 (28%), Gaps = 7/163 (4%)
Query: 31 FVLHFFPWGEKGTPLE--GFSAPRSWQLEFM-EVVDAHCLNSVNNPNPEVFKGAISAGRG 87
F + W + T + F P + +F+ + L + + + AI+ G
Sbjct: 290 FFTYRLRWRKSMTHVRPRHFIVPFTQNRDFLGREIFLEELRAKLCVDDRPRRLAITGLGG 349
Query: 88 IGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLS 147
IGKT + W RP SV + + + + K +++
Sbjct: 350 IGKTQVALQTAFWFKENRPTWSVFWVQAYSMSAFEKACSGIIDRSGIQVAKDEDPKETVQ 409
Query: 148 LHPAPWYSDVL--HCSLGIDSKHYSTMCR--TYSEERPDTFVG 186
S D + S P+ G
Sbjct: 410 RFLNSRDSGNWLFIVDNADDGQTMFRSGNSPGISNFLPENEDG 452
>gi|331238525|ref|XP_003331917.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309310907|gb|EFP87498.1| DNA repair protein RAD5 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1036
Score = 37.6 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 4/154 (2%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G+GKT L+L + +A + ++ E+ K+ L W
Sbjct: 449 GMGKTIQTIALILSDRVPGHRKQTLVIAPTVAIMQWR--NEIEKFAKGLTVNVWHGGNRS 506
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP--DTFVGHHNTYGMAIINDEASGTP 204
+ DV+ S + + + + H +I DEA
Sbjct: 507 NAQEEMENFDVVLTSFAVLESAFRRQNSGFRRKGQIIKESSLLHQINWHRVILDEAHNIK 566
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
D G + R+ + + + G+ Y
Sbjct: 567 DRSCNTAKGAFELKATYRWCLSGTPLQNRVGELY 600
>gi|295114516|emb|CBL33153.1| Uncharacterized protein conserved in bacteria [Enterococcus sp.
7L76]
Length = 906
Score = 37.6 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 18/217 (8%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q E + +P +F A G GKT L A L+L+L + +
Sbjct: 49 RYYQDEAIRNYHYTQTRIKPSPQHVLFNMAT----GSGKTDLMAGLILYLYQEYDYKNFL 104
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
N+ + L T V++ + E+ + S+
Sbjct: 105 FTVNTNSVLMKTKDNLVNQNSDKYLFQDKIEIDGKQISVVEVERFPRVQQDNTIYIKLSS 164
Query: 172 MCRTYSEERP--DTFVGH--HNTYGMAIINDEASGTP----------DVINLGILGFLTE 217
+ + + + +G + + + I+ DEA + I L
Sbjct: 165 VQKVSDDLCVVKENTMGLADYERHPVVILADEAHHYSASTKTEKESENTWESAINKILNA 224
Query: 218 RNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQID 254
RN + E+ D ++
Sbjct: 225 RNEQEQKNLLLEFTATVDFDKEVIYDKYRDKVVYRYP 261
>gi|18312592|ref|NP_559259.1| hypothetical protein PAE1371 [Pyrobaculum aerophilum str. IM2]
gi|18160061|gb|AAL63441.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 788
Score = 37.6 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 334 VVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYL---EML 390
RG I + + + +E+ + +D G D L +
Sbjct: 542 FAKLRGWRIVRIATHPELQDMGLGTLMLKKIEE-EARELGMDYVGVGFGVYDRLLKFWVR 600
Query: 391 GYHVYRVLGQKRAVDLEFCR-------NRRTELHVKMADWLEFASLINHSGLIQNLKSL 442
+V L +R N + E +VK A+ + LI +L
Sbjct: 601 NGYVPIHLSPERNPSSGEYSVLLVKPLNEKAEAYVKYAN------IEFRRRLIHSLMGP 653
>gi|50312271|ref|XP_456167.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645303|emb|CAG98875.1| KLLA0F24398p [Kluyveromyces lactis]
Length = 1055
Score = 37.6 bits (85), Expect = 4.8, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 10/125 (8%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
A++AGRG GK+ + + ++ + S LKT L+ + K L +
Sbjct: 279 VALTAGRGRGKSAALGISIA-AAVSHGYSNIFVTSPSPENLKT-LFEFIFKGFDALGYQE 336
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE 199
+ + + ++ + + + ++ DE
Sbjct: 337 HIDYDIIQSTNPSFNKAIVRVDIKREHRQTIQYIIPNDSHVLGQAE--------LVVIDE 388
Query: 200 ASGTP 204
A+ P
Sbjct: 389 AAAIP 393
>gi|307290093|ref|ZP_07570017.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0411]
gi|306498935|gb|EFM68429.1| phage terminase, large subunit, PBSX family [Enterococcus faecalis
TX0411]
Length = 434
Score = 37.6 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 80/297 (26%), Gaps = 31/297 (10%)
Query: 94 NAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPW 153
A +++ L+ P +V V + L + +
Sbjct: 49 IAHIIVQLIMRYPVNAVAI-------------RYVDNTIELSIFEQIKWAIEEQGVSKYF 95
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYS-EERPDTFVGHHNTYGMAIINDEA-----SGTPDVI 207
+ + + + R ER + + +A I + A +
Sbjct: 96 KVNKSPMKITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 155
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--QIDTRTVEGIDPSF 265
N + G L + +F+ + P+R + + F + I +F
Sbjct: 156 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 215
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIA 325
E + A + E G+ + F L +I+ + + + + G D
Sbjct: 216 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDFG 274
Query: 326 EEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
D V G K R K+ + Y D I D+
Sbjct: 275 -YATDPLAFVRWHYDKKKNGIYAIDEIYGVKISNRELAKKVK--AKGYEADRIGADS 328
>gi|239835184|ref|ZP_04683510.1| Hypothetical protein OINT_3000017 [Ochrobactrum intermedium LMG
3301]
gi|239821160|gb|EEQ92731.1| Hypothetical protein OINT_3000017 [Ochrobactrum intermedium LMG
3301]
Length = 508
Score = 37.6 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 28/271 (10%), Positives = 63/271 (23%), Gaps = 30/271 (11%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P Q EFM + F+ I R G +TL ++L
Sbjct: 41 PNDAQEEFMRKL--------------WFRNLIPKARQRGFSTLVQLMILDACLFVLNTKA 86
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ--SLSLHPAPWYSDVLHCSLGIDSKH 168
+A + ++ LP+ + + W +
Sbjct: 87 AIIAQDLELARAIRDDKIMFAYDRLPDFVLRNVPLVVDNAKRLEWKNGSEMIIGTTARGR 146
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTS 228
+ H ++ P I+ T + A+ + T+
Sbjct: 147 TLSWLHVSEYGEICAKNPEHAKE------IQSGALPAAEYGTIIIEATAQGADGDF--TT 198
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQF 288
+ D++ + E I + G
Sbjct: 199 KVMQAKAVAESGRQLTRKDYRLHFASWWDAPEYEVEDPEHITISPKD--HAYFDRMEGLI 256
Query: 289 PQQDI----DSFIPLNIIEEALNREPCPDPY 315
++ ++ +E + ++E +
Sbjct: 257 GREISLNKRAWYVQQRDVEFSGDQEMMWSQF 287
>gi|95116637|ref|NP_041153.2| ORF62 [Ictalurid herpesvirus 1]
gi|114152910|sp|Q00140|VTER_ICHVA RecName: Full=Probable DNA-packaging protein; AltName:
Full=Terminase
gi|94449348|gb|AAA88166.2| ORF62 [Ictalurid herpesvirus 1]
Length = 734
Score = 37.6 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 55/193 (28%), Gaps = 10/193 (5%)
Query: 61 VVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQL 120
+D + A R GKTT+ ++L M + I ++ A +
Sbjct: 167 SMDTGREINRIFDEYGKNYTLALAPRQCGKTTIM-VILLAAMISYLDIEIVVQAQH-KTM 224
Query: 121 KTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
TL+ V L + + W+ ++ + + S
Sbjct: 225 CETLYDRVELVLHEIQHSPWYPEENRIVTIKGTTETREFIYDPAYKGTTRVHFLSSS--- 281
Query: 181 PDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEI 240
++ DEA+ L +L L +N + I S+ S
Sbjct: 282 ---PNAARGQIPDFVLIDEAAFVNPASLLSLLPLLAVKNRKQ--IHISSHIAKSWVTRVE 336
Query: 241 FNKPLDDWKRFQI 253
D + F +
Sbjct: 337 TIMGSDGKRAFHV 349
>gi|331229057|ref|XP_003327195.1| DNA repair protein rad16 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309306185|gb|EFP82776.1| DNA repair protein rad16 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 968
Score = 37.6 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 4/154 (2%)
Query: 87 GIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSL 146
G+GKT L+L + +A + ++ E+ K+ L W
Sbjct: 398 GMGKTIQTIALILSDRVPGHRKQTLVIAPTVAIMQWR--NEIEKFAKGLTVNVWHGGNRS 455
Query: 147 SLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERP--DTFVGHHNTYGMAIINDEASGTP 204
+ DV+ S + + + + H +I DEA
Sbjct: 456 NAQEEMENFDVVLTSFAVLESAFRRQNSGFRRKGQIIKESSLLHQINWHRVILDEAHNIK 515
Query: 205 DVINLGILGFLTERNANRFWIMTSNPRRLSGKFY 238
D G + R+ + + + G+ Y
Sbjct: 516 DRSCNTAKGAFELKATYRWCLSGTPLQNRVGELY 549
>gi|146418683|ref|XP_001485307.1| hypothetical protein PGUG_03036 [Meyerozyma guilliermondii ATCC
6260]
Length = 288
Score = 37.6 bits (85), Expect = 5.0, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTL 124
+ + G GKT + A L +W PG V+ +A + ++ +
Sbjct: 197 VFVGSPTGSGKT-VVAELAIWHAFKEFPGSKVVYIAPMKALVRERV 241
>gi|317501082|ref|ZP_07959288.1| phage Terminase [Lachnospiraceae bacterium 8_1_57FAA]
gi|316897469|gb|EFV19534.1| phage Terminase [Lachnospiraceae bacterium 8_1_57FAA]
Length = 535
Score = 37.6 bits (85), Expect = 5.1, Method: Composition-based stats.
Identities = 39/305 (12%), Positives = 80/305 (26%), Gaps = 30/305 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + I + +GK+ L A + L L V
Sbjct: 52 DWQERIIRDLFGVLKPNGYR---QFNTAYIEIPKKMGKSELAAAVALLLCCGDGEERAEV 108
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q T ++ + + + P + ++ L+ Y + ++ YS
Sbjct: 109 YGCAADRQQA-TIVFDVAADMVRMCPALNR-RVKILASQKRIIYEPTNSFYQVLSAEAYS 166
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
F H + + G+ D + +T + I
Sbjct: 167 KHGFNI---HGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGNDTNTICYEVH 223
Query: 231 RRLSGKFYEIFNK-----------PLDDWKRFQIDTRTVE------GIDPSFH--EGIIA 271
++ P +DW ++ + GID E
Sbjct: 224 QKAQDILDGRKVDPTFYPVIYGAEPDEDWTDPEVWKKANPSLGITVGIDKVEAACESAKQ 283
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDN 331
G + R Q+ +Q + A G D++
Sbjct: 284 NPGE-ENSFRQLRLNQWVKQAVRWMPMDKWDACAFPVNEDDLEGRVCYGGLDLSSTTDIT 342
Query: 332 TVVVL 336
+ V++
Sbjct: 343 SFVLV 347
>gi|126737102|ref|ZP_01752837.1| hypothetical phage terminase large subunit [Roseobacter sp.
SK209-2-6]
gi|126721687|gb|EBA18390.1| hypothetical phage terminase large subunit [Roseobacter sp.
SK209-2-6]
Length = 593
Score = 37.6 bits (85), Expect = 5.1, Method: Composition-based stats.
Identities = 23/214 (10%), Positives = 46/214 (21%), Gaps = 14/214 (6%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFK 79
W E F E + F W L + + ++
Sbjct: 47 WDLEEANRAIRFFPSCLTITEGEKEGQPFDL-LPWHLFVAGSIYGWRDKNGLRRYRFIW- 104
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISV-ICLANSETQLKTTLWAEVSKWLSLLPNK 138
+ G+G K+ A + L+ + R + ++ +
Sbjct: 105 --LETGKGQAKSPFMAGVGLYEILGRKKQRAEAYCIGEDRDTANVMFRDAVAMCRA---- 158
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
SL + H + E +A+ D
Sbjct: 159 PVPGWGEDSLESTRRVNISGRGDNAWRISH---PKSSSRFEPVANSDAISGPKPVAVFGD 215
Query: 199 EASGTP--DVINLGILGFLTERNANRFWIMTSNP 230
E I++ + T+ P
Sbjct: 216 EIHEMKTNKAISIWRAAIAKRPGDPMMILGTNTP 249
>gi|220933618|ref|YP_002512517.1| phage uncharacterized protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219994928|gb|ACL71530.1| phage uncharacterized protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 537
Score = 37.6 bits (85), Expect = 5.1, Method: Composition-based stats.
Identities = 36/295 (12%), Positives = 75/295 (25%), Gaps = 14/295 (4%)
Query: 63 DAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNA-WLVLWLMSTRPGISVICLANSETQLK 121
+ +P AI+A RG K+T+ + V+W + T I ++ Q
Sbjct: 71 YLYRRLPEIADSPRSETDAIAAPRGEAKSTITSQIYVIWCVVTGRKWYPIIGMDAFDQAA 130
Query: 122 TTLWAEVSKWLSLLPNKHWFEM--QSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEE 179
L A ++ + F+ + A + + R
Sbjct: 131 IMLEAIKAELEANPRLNMDFQEATGQGRVWRAGVIVTRNNRKIEAVGSGKRIRGR---RH 187
Query: 180 RPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF---LTERNANRFWIMTSNPRRLSGK 236
P N D ++ + L A I+
Sbjct: 188 GPHRPDLFVGDDLENDENVRTPEQRDKLHGWLNKAVLKLGAAGAKFDVIVIGTILHYDSV 247
Query: 237 FYEIFNKPLDDWKRFQIDTRTVEGID--PSFHEGIIARYGLDSDVTRVEVCGQFPQQDI- 293
+ PL +F+ R + +D + E ++ + ++ +
Sbjct: 248 LARVLKNPLWRGNKFKAVIRWPDRMDLWDRWEELLLNQGKEAAEAFYRKNQAHMETGAEV 307
Query: 294 DSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDW 348
+ + + R D +A D + L +W
Sbjct: 308 SWPDGRPLYDLMVIRAR--DGHAAFDSELQNDPLSDDEAPFAKVIVFWVNRLAEW 360
>gi|190346772|gb|EDK38938.2| hypothetical protein PGUG_03036 [Meyerozyma guilliermondii ATCC
6260]
Length = 288
Score = 37.6 bits (85), Expect = 5.1, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTL 124
+ + G GKT + A L +W PG V+ +A + ++ +
Sbjct: 197 VFVGSPTGSGKT-VVAELAIWHAFKEFPGSKVVYIAPMKALVRERV 241
>gi|270209588|gb|ACZ64128.1| terminase [Enterococcus phage phiFL3B]
Length = 427
Score = 37.6 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 40/297 (13%), Positives = 80/297 (26%), Gaps = 31/297 (10%)
Query: 94 NAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPW 153
A +++ L+ P +V V + L + +
Sbjct: 42 IAHIIVQLIMRYPVNAVAI-------------RYVDNTIELSIFEQIKWAIEEQGVSKYF 88
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYS-EERPDTFVGHHNTYGMAIINDEA-----SGTPDVI 207
+ + + + R ER + + +A I + A +
Sbjct: 89 KVNKSPMKITYKPRGNYIVFRGAQNPERIKSLKDSRFPFAIAWIEELAEFKTEDDVKTIT 148
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRF--QIDTRTVEGIDPSF 265
N + G L + +F+ + P+R + + F + I +F
Sbjct: 149 NSLLRGELADGLFYKFFYSYNPPKRRQSWVNKKYESSFQPENTFVHHSTYKDNPFIAQAF 208
Query: 266 HEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIA 325
E + A + E G+ + F L +I+ + + + + G D
Sbjct: 209 IEEVNATRAKNPKRAEWEYDGKAIGSGVVPFDNLRVIKGCI-TDEMVANFDNIRNGLDFG 267
Query: 326 EEGGDNTVVVLRR------GPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDA 376
D V G K R K+ + Y D I D+
Sbjct: 268 -YATDPLAFVRWHYDKKKNGIYAIDEIYGVKISNRELAKKVK--AKGYEADRIGADS 321
>gi|222085913|ref|YP_002544445.1| phage terminase large subunit [Agrobacterium radiobacter K84]
gi|221723361|gb|ACM26517.1| phage terminase large subunit [Agrobacterium radiobacter K84]
Length = 609
Score = 37.6 bits (85), Expect = 5.3, Method: Composition-based stats.
Identities = 25/248 (10%), Positives = 57/248 (22%), Gaps = 19/248 (7%)
Query: 20 WSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFK 79
W D F + F Q + +
Sbjct: 33 WDDAAATRVFRFFEERLRLSDGQFDGTPFLL-HPSQAFKLGSIFGWKKADGTR---RFRT 88
Query: 80 GAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLSLLPNK 138
I G+G GK+ + L+ + + I A ++ L+ + K + P
Sbjct: 89 VYIEEGKGNGKSPFAGGVGLYGLMADNEPGAQIYAAAAKKDQAQILFQDACKMVRQAPA- 147
Query: 139 HWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIND 198
+ + + + + D
Sbjct: 148 ----LGQRLKFSGGLGKEFNIAHHKSQ--------SFFRPISKEAGKTGSGPRPHFALCD 195
Query: 199 EASGTPDV-INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRT 257
E PD I + R ++T++ + +E ++ + Q
Sbjct: 196 EVHEHPDRGIMEMLQRGFKFRQNPLLLMITNSGSDRNSVCWEERDRAVKVVAGTQTPDDD 255
Query: 258 VEGIDPSF 265
+ ++
Sbjct: 256 FTFVGEAW 263
>gi|291556498|emb|CBL33615.1| Phage terminase-like protein, large subunit [Eubacterium siraeum
V10Sc8a]
Length = 521
Score = 37.6 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 37/298 (12%), Positives = 77/298 (25%), Gaps = 30/298 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + I + GK+ L A + L L+ V
Sbjct: 38 DWQEQIIRDLFGVLKPNGYR---QFNTAYIEIPKKQGKSELAAAVALLLLCGDGEERAEV 94
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPN-KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY 169
A Q K ++ + P ++ ++ + L D
Sbjct: 95 YGCAADRNQAK-IVFDVAVDMVRFCPALSKRVKILESQKKITYLPTNSSYQVLSAD---- 149
Query: 170 STMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNA--------- 220
++ F H + + G+ D + +T
Sbjct: 150 VANKHGFNTHGVI-FDELHTQPNRKLFDVMLQGSGDARMQPLYFLITTAGNDTNSICYEV 208
Query: 221 NRFWIMTSNPRRLSGKFYEIFNKPLDD--------WKRFQIDTRTVEGIDPSFHE-GIIA 271
++ I + R++ FY + +D WK+ GID
Sbjct: 209 HQKAIDIAEGRKVDPTFYSVIYGAAEDEDWTDPEVWKKANPSLGITVGIDKVQAACESAQ 268
Query: 272 RYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + + R Q+ +Q + A G D++
Sbjct: 269 QNPGEENAFRQLRLNQWVKQSVRWMPMEKWDACAFPVSEDDLEGRICYGGLDLSSTTD 326
>gi|256832119|ref|YP_003160846.1| type III restriction protein res subunit [Jonesia denitrificans DSM
20603]
gi|256685650|gb|ACV08543.1| type III restriction protein res subunit [Jonesia denitrificans DSM
20603]
Length = 621
Score = 37.6 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 17/82 (20%)
Query: 37 PWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAW 96
PWG + R+WQ E +EV A++ G GKTT
Sbjct: 57 PWGTA-------TKLRAWQAEALEVYRERQPRDF---------LAVATP-GAGKTTFALR 99
Query: 97 LVLWLMSTRPGISVICLANSET 118
L L+ R V +A +E
Sbjct: 100 LATELLDARIVRKVTVVAPTEH 121
>gi|16799183|ref|NP_469451.1| putative terminase large subunit from bacteriophage A118 [Listeria
innocua Clip11262]
gi|16412525|emb|CAC95338.1| putative terminase large subunit from Bacteriophage A118 [Listeria
innocua Clip11262]
Length = 443
Score = 37.6 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 45/383 (11%), Positives = 100/383 (26%), Gaps = 58/383 (15%)
Query: 80 GAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKH 139
GR K+++ + ++ P +++CL L +++ ++ L +
Sbjct: 36 IIAKGGRSSMKSSVISLKLVEKKMANPQSNMVCLRKVANTLYKSVYQQIKWALYEMGVAD 95
Query: 140 WFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHH---NTYGMAII 196
F+ + I K + T + P
Sbjct: 96 QFKFGKSP--------------MEIIHKEWGTGFYFSGCDDPAKLKSMKIPVGYVSDLWF 141
Query: 197 NDEASGTPDVINLGILGFLTER----NANRFWIMTSNPRRLSGKF---YEIFNKPLDDWK 249
+ A + + M+ NP R ++ Y + DD+
Sbjct: 142 EELAEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYEWVNEYVDSKRSDDDYL 201
Query: 250 RFQIDTRTVE--GIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSF----------I 297
E + + I D D R G+ + + I
Sbjct: 202 IHHTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPLKAI 261
Query: 298 PLN----IIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVI---EHLFDWSK 350
P + +I+ A++ L +G V++L + +
Sbjct: 262 PADDRLILIDFAIDTGHQVSATTCLALGFTAKR-----NVILLDTYYYSPANQVVKKAPS 316
Query: 351 TDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCR 410
+ ++ +V KY G +T D E G ++ +
Sbjct: 317 DYSKELREFMTKVVSKYNAP--------VGMQTVDSAEG-GLRNQYYKDYGVSLHPVA-K 366
Query: 411 NRRTELHVKMADWLEFASLINHS 433
++ ++ + D L
Sbjct: 367 GKKVDMVDFVCDLLAQGRFYYLD 389
>gi|154509378|ref|ZP_02045020.1| hypothetical protein ACTODO_01909 [Actinomyces odontolyticus ATCC
17982]
gi|153799012|gb|EDN81432.1| hypothetical protein ACTODO_01909 [Actinomyces odontolyticus ATCC
17982]
Length = 211
Score = 37.6 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 18/158 (11%), Positives = 40/158 (25%), Gaps = 9/158 (5%)
Query: 65 HCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTL 124
++ + AI G GK+TL + + W T ++ S Q
Sbjct: 17 WLFRHLSARCEDGALTAIVGPSGSGKSTLLSLIAGWE--TPTEGTITIPRPSGEQKPRIA 74
Query: 125 W---AEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY----STMCRTYS 177
W + + + + A ++ + H
Sbjct: 75 WVFQNPFGVRARSAIDHVALPLLARGMSRAQADAEAQRLLNAFNLAHLATRPFRDLSGGE 134
Query: 178 EERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFL 215
+R G + ++++ + I L
Sbjct: 135 AQRVLLARGLACAPTLLLVDEPTAQLDQSTARDIASTL 172
>gi|291164759|gb|ADD80789.1| TerL [Rhodococcus phage ReqiDocB7]
Length = 660
Score = 37.2 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 69/261 (26%), Gaps = 24/261 (9%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFKGAI-SAGRGIGKTTLNAW---LVLWLMST--------- 104
M + + ++ V + A+ + G GIGKTT + ++ +
Sbjct: 51 VMAALIEIFGDKIDPNWISVKRKAVMTGGIGIGKTTFASIVLPYMVHWVYCLKDPQDFFG 110
Query: 105 -RPGISV--ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
PG + + ++ SE Q L+ +V + P ++
Sbjct: 111 LAPGSKIAFMMMSTSEKQATEVLFGDVKARVENSPWFERRCPYDPKFEKQLRFAKKNLWI 170
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNAN 221
L S+ D H +E T
Sbjct: 171 LPGGSEETRFEGYNILGGVIDEGDS-HKKTARKDYAEEGYDTIHSRIESRFMDHKAGKFK 229
Query: 222 RFWIMTSNPRRLSGKFYEIFN--KPLDDWKRFQIDTRTVEGI-----DPSFHEGIIARYG 274
I+ + +G ++N D ++ G +P +
Sbjct: 230 GILILIGQTKSATGFMRRMYNEFMKEPDAAAIRMSIWESYGWHRYTENPDDEKNYRETAP 289
Query: 275 LDSDVTRVEVCGQFPQQDIDS 295
S V V ++D D+
Sbjct: 290 RKSFVYDVMRKEIIKKEDADA 310
>gi|297569690|ref|YP_003691034.1| flagellar biosynthetic protein FlhF [Desulfurivibrio alkaliphilus
AHT2]
gi|296925605|gb|ADH86415.1| flagellar biosynthetic protein FlhF [Desulfurivibrio alkaliphilus
AHT2]
Length = 391
Score = 37.2 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 43/172 (25%), Gaps = 14/172 (8%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
W+ + +E + L P V A+ G+GKTT A + W V L
Sbjct: 159 WRNQILEQLAVRPLQLNGRTEPLV--IALVGPTGVGKTTTAAKIAAWFSL-HENARVALL 215
Query: 114 A------NSETQLKT-----TLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
+ + QL+T L E+ L Q +
Sbjct: 216 SMDCYRIGATDQLRTYARIMRLPCEIVLRRQDLQAALHKHRQKDLIIIDTAGKSPFDEDH 275
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGF 214
+ + + + I G P I +
Sbjct: 276 IPELGQWFADHGGITPYLVLSATAKKEDINHIIATYRPLGVPAAILTKLDET 327
>gi|172087482|ref|XP_001913283.1| putative helicase [Oikopleura dioica]
gi|42601411|gb|AAS21435.1| putative helicase [Oikopleura dioica]
Length = 2017
Score = 37.2 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 23/177 (12%)
Query: 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS 103
L FS Q + + H N+ + A G GKT +L +
Sbjct: 1172 ALYSFSHFNPIQTQVFHCLYHHDSNA-----------LVGAPTGSGKTACAELSMLKVFR 1220
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
P + +A + +K + W L ++ + V +
Sbjct: 1221 DYPNGKCVYIAPLKALVKERM----DDWSKKLGGKLGKKLVEMTGDIAPDQKAIVSADII 1276
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + + R++ + I+ DE + + +T N
Sbjct: 1277 ITTPEKWDGISRSWQTRKYVR-------DVRLIVIDEIHMLGEDRGPVLESIVTRTN 1326
>gi|256618029|ref|ZP_05474875.1| predicted protein [Enterococcus faecalis ATCC 4200]
gi|256597556|gb|EEU16732.1| predicted protein [Enterococcus faecalis ATCC 4200]
gi|315031910|gb|EFT43842.1| type III restriction enzyme, res subunit [Enterococcus faecalis
TX0017]
Length = 1161
Score = 37.2 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 34/234 (14%), Positives = 70/234 (29%), Gaps = 14/234 (5%)
Query: 57 EFMEVVDAHCLNSVNNPNPEVFKGAISA---GRGIGKTTLNAWLVLWLMSTRPGISVICL 113
+ E + H + ++ + + G G+GKT A ++ P + VI +
Sbjct: 256 KIWEALYPHQREGILKIQNKLMQFGTATLADGVGLGKTRTTAGVIRLEKKINPHLKVIII 315
Query: 114 ANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSD---VLHCSLGIDSKHYS 170
A+ + + W + + + F + P D + + ID H
Sbjct: 316 ADKKLHEQ---WQADLDAVDVDYSNFIFINRETFALMKPAELDLIAATYQMIVIDEGHQG 372
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
RT + R +V H+ + M I A+ + I + +
Sbjct: 373 FKNRTTAAYRHAEYVFSHSAHNMKGIMLTATPWNNKREDVI-----NIGSLFLEVDNIPL 427
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
R ++ + + E + F + YG +S
Sbjct: 428 DRTYRTYFAFGARGKAVKALANDNKAFAEFWEDLFLQRTRKTYGGESVTFAERF 481
>gi|313227383|emb|CBY22530.1| unnamed protein product [Oikopleura dioica]
Length = 1980
Score = 37.2 bits (84), Expect = 5.9, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 23/177 (12%)
Query: 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS 103
L FS Q + + H N+ + A G GKT +L +
Sbjct: 1137 ALYSFSHFNPIQTQVFHCLYHHDSNA-----------LVGAPTGSGKTACAELSMLKVFR 1185
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
P + +A + +K + W L ++ + V +
Sbjct: 1186 DYPNGKCVYIAPLKALVKERM----DDWSKKLGGKLGKKLVEMTGDIAPDQKAIVSADII 1241
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + + R++ + I+ DE + + +T N
Sbjct: 1242 ITTPEKWDGISRSWQTRKYVR-------DVRLIVIDEIHMLGEDRGPVLESIVTRTN 1291
>gi|194100357|ref|YP_002003787.1| gp19 [Enterobacteria phage EcoDS1]
gi|193201352|gb|ACF15831.1| gp19 [Enterobacteria phage EcoDS1]
Length = 587
Score = 37.2 bits (84), Expect = 6.0, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLK-TTLWAEVSKWLSLLP 136
+ + A RGIGK+ + V+W + P + + ++ S+ + +++ + + + L+P
Sbjct: 53 RRFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERADANSIF--IKRIIDLMP 110
Query: 137 -NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEER 180
+ Q + K +
Sbjct: 111 QLQELKPKQGQRDAVISFDVGPAKPDHSPSVKSVGITGQLTGSRA 155
>gi|332653904|ref|ZP_08419648.1| phage terminase large subunit (GpA) [Ruminococcaceae bacterium D16]
gi|332516990|gb|EGJ46595.1| phage terminase large subunit (GpA) [Ruminococcaceae bacterium D16]
Length = 640
Score = 37.2 bits (84), Expect = 6.1, Method: Composition-based stats.
Identities = 49/371 (13%), Positives = 91/371 (24%), Gaps = 38/371 (10%)
Query: 11 TEQKLFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSV 70
E D +LS + PW K TP E M
Sbjct: 26 PESLTVDEWADKHRRLSPESSA-EAGPWRTKRTPYL---------EEPMRAFTD------ 69
Query: 71 NNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSK 130
P+V K + A +GK+ L ++ +++ PG ++ + + +
Sbjct: 70 ----PKVHKIVMVAASQVGKSELELNIIGYIIDQDPGS-ILYVHPTIDDARK------FS 118
Query: 131 WLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHY--STMCRTYSEERPDTFVGHH 188
L + P + +H T + S
Sbjct: 119 RLRVAPMIRDSKPLKAKVHDVKAKDSGNTILQKSFPGGMLTLTGSNSASALASTPARYII 178
Query: 189 NTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDW 248
A D L T NA + T + S + + W
Sbjct: 179 GDERDRW-ATSAGTEGDPWALAEARQATFYNAKAVEVSTPTIKGNSNIETSFYQGTQERW 237
Query: 249 KRFQIDTRTVEGIDPSFH---EGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEA 305
+ I G S + V P IP +++ +
Sbjct: 238 CHRCPECGEYSEIVFDNIHFDPEAKRIRGKKSWSLKSGVSWSCPAC--GCLIPEDVMRKQ 295
Query: 306 LNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVE 365
+ +P G ++ V++ L K D + + L+
Sbjct: 296 PAKWIADNPD-AYKKGVRSFWLNAFSSPWTPWEKIVLKFLDA--KDDPQRLKVVYNTLLG 352
Query: 366 KYRPDAIIIDA 376
+ D ++
Sbjct: 353 QLWEDRGDLED 363
>gi|257413151|ref|ZP_05591542.1| phage terminase large subunit [Roseburia intestinalis L1-82]
gi|257204482|gb|EEV02767.1| phage terminase large subunit [Roseburia intestinalis L1-82]
Length = 408
Score = 37.2 bits (84), Expect = 6.1, Method: Composition-based stats.
Identities = 34/257 (13%), Positives = 64/257 (24%), Gaps = 21/257 (8%)
Query: 22 DEIKLSFSNFVLHFFP--------WGEKGTPLEGFSAPR--SWQLEFMEVVDAHCLNSVN 71
D + +F V +F P W EK L S+ W+ E + +
Sbjct: 8 DSLNNTFVRAVKNFKPPERLTVSQWAEKNRRLSPESSAEAGPWRNERTPYLVDIMDAFTD 67
Query: 72 NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKW 131
P+V K + A +GK+ + ++ +++ PG ++ + + ++
Sbjct: 68 ---PKVNKLTVVAASQVGKSEVELNIIGYIIDQDPGSTIYV-QPTLDDARKFSRLRIAPM 123
Query: 132 LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV-GHHNT 190
+ ++ S + T
Sbjct: 124 IRDSK-----PLRKKVSDVKTRDSGNTILQKSFPGGMLTITGSNSPSALASTPARYIIGD 178
Query: 191 YGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKR 250
A D L T NA + T + S F + W
Sbjct: 179 ERDRW-ASSAGTEGDPWALAEARQTTFYNAKSIEVSTPTIKGASNIENGFFAGTQERWCH 237
Query: 251 FQIDTRTVEGIDPSFHE 267
D I
Sbjct: 238 KCPDCGEYHNIVFDNIH 254
>gi|281355726|ref|ZP_06242220.1| exodeoxyribonuclease V, alpha subunit [Victivallis vadensis ATCC
BAA-548]
gi|281318606|gb|EFB02626.1| exodeoxyribonuclease V, alpha subunit [Victivallis vadensis ATCC
BAA-548]
Length = 635
Score = 37.2 bits (84), Expect = 6.1, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 58 FMEVVDAHCLNSVNNPNPEVFK-----------GAISAGRGIGKTTLNAWLVLWLMSTRP 106
+ + + N P+ + IS G G GKTT+ A L+ + P
Sbjct: 154 AFDALFINYRNGAAEDRPDFQRLAALAAASRDFTVISGGPGTGKTTVVAALLALEFARAP 213
Query: 107 GISVICLANS-ETQLK 121
+ V A + + Q +
Sbjct: 214 ELRVALCAPTGKAQAR 229
>gi|55820924|ref|YP_139366.1| DNA endonuclease, type III restriction and modification system
[Streptococcus thermophilus LMG 18311]
gi|55822846|ref|YP_141287.1| DNA endonuclease, type III restriction and modification system
[Streptococcus thermophilus CNRZ1066]
gi|55736909|gb|AAV60551.1| DNA endonuclease, type III restriction and modification system
[Streptococcus thermophilus LMG 18311]
gi|55738831|gb|AAV62472.1| DNA endonuclease, type III restriction and modification system
[Streptococcus thermophilus CNRZ1066]
Length = 928
Score = 37.2 bits (84), Expect = 6.2, Method: Composition-based stats.
Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 7/178 (3%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R++Q + + NP +F A G GKT L A L+L+L + +
Sbjct: 49 RAYQDKAIRNYHYTQTQIKPNPQHVLFNMAT----GSGKTDLMAGLILYLYQEHGYRNFL 104
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
N+ + L T V++ K E+ + + D+ Y
Sbjct: 105 FTVNTNSVLMKTKDNLVNENSEKYLFKDKIEIDGKHIFIKQVE---RFPRIQQDNTIYIK 161
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ + + N + D + +E+ A W N
Sbjct: 162 LSSVQKVSDDLFVLKENTMGLSDYENQPVAVLADEAHHYSASTKSEKEAENTWESAIN 219
>gi|326776076|ref|ZP_08235341.1| type III restriction protein res subunit [Streptomyces cf. griseus
XylebKG-1]
gi|326656409|gb|EGE41255.1| type III restriction protein res subunit [Streptomyces cf. griseus
XylebKG-1]
Length = 551
Score = 37.2 bits (84), Expect = 6.3, Method: Composition-based stats.
Identities = 37/299 (12%), Positives = 81/299 (27%), Gaps = 27/299 (9%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R +Q E ++ + + G+GKT + ++ L+++RP V+
Sbjct: 138 RPYQAEAVQAI--------EGDLAADGSALLVLATGLGKTVVGGEVIGNLLASRPQAKVL 189
Query: 112 CLANSE---TQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKH 168
+A+ QL+ LW + K + P + S +++
Sbjct: 190 VVAHMRDLVEQLEKALWRHIPKTV---PTRLLTG--EDKPRSLEGVVVATVESALAAARN 244
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS-GTPDVINLGILGFLTERNANRFWIMT 227
+E + + + A G G +T R + M
Sbjct: 245 GYRPDLIMIDETHHVAETGRFAELLNLCSTAAQFGVTATPWRGDKFDITARFGYPSFSMG 304
Query: 228 SNPRRLSGKFYEIFNKPLD---DWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEV 284
G + + DW + +R G + D ++
Sbjct: 305 IAEGMAKGFLSAVDYRLYTDGVDWGAVREISR--HGYSIKDLNRHLFLPQRDEEIVEHLR 362
Query: 285 CGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIE 343
+ + + IE A + P + + + R ++
Sbjct: 363 AAWRETVEPRAIVFCQTIEHAEHMAELLSVSDPQWVNASYLH-----SGLAKRHRNILL 416
>gi|227498314|ref|ZP_03928464.1| prophage protein [Acidaminococcus sp. D21]
gi|226903776|gb|EEH89694.1| prophage protein [Acidaminococcus sp. D21]
Length = 530
Score = 37.2 bits (84), Expect = 6.5, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 25/235 (10%)
Query: 15 LFDLMWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPN 74
L D + +E F+ H K P WQ + + + +
Sbjct: 12 LPDSRYDEEKADRAVAFIEHLCHTKGKWAGKPFLLLP--WQEQIVRDLFGIVKKNGKR-- 67
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMST-RPGISVICLANSETQLKTTLWAEVSKWLS 133
+ I + GK+ L A + L+L+ + + A + + ++ + +
Sbjct: 68 -QFLTAYIEIPKKNGKSELAAAIALYLLYADNEPSAEVYGAACDRNQASIVFDVARQMVE 126
Query: 134 LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGM 193
+ P + + S ++ Y + + H
Sbjct: 127 MSPA---------LMRRSKIRSAGKRIINYRNAGFYQVLSAETGTK--------HGLNVS 169
Query: 194 AIINDEASGTPDV--INLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLD 246
++ DE P+ ++ G R F+I+T+ + YE+ K LD
Sbjct: 170 GLVFDEIHAQPNRKLYDVLTKGSGDAREQPLFFIITTAGNDKNSICYELHTKALD 224
>gi|91974494|ref|YP_567153.1| helicase-like protein [Rhodopseudomonas palustris BisB5]
gi|91680950|gb|ABE37252.1| helicase-like protein [Rhodopseudomonas palustris BisB5]
Length = 924
Score = 37.2 bits (84), Expect = 6.7, Method: Composition-based stats.
Identities = 38/303 (12%), Positives = 76/303 (25%), Gaps = 46/303 (15%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ F+ + H + G+GKT A L G +I
Sbjct: 243 MPWQRAFVSLFLEHRETYGQVRLLLADEV------GVGKTLSLAGSALVSALLGDGPVLI 296
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGID---SKH 168
+ T W K +P+ W Q + P + +
Sbjct: 297 LCPATL----TAQWQIELKDRLNIPSAVWLS-QEKAWLLDPDEIPMPSVGPEGVVKCPRQ 351
Query: 169 YSTMCRTYSEERPDTFVGHHNTYGMAIINDEAS--------GTPDVINLGILGFLTERNA 220
+ + + + + +I DEA + +L F+TE
Sbjct: 352 IALVSTGLIFHKTEERELLMSRRYGMVILDEAHRARGKTESDEEERKANNLLSFMTEIAK 411
Query: 221 NRFWIMTSNPRRLSGKFYEIF-----------NKPLDDWKRFQIDTRTVEGIDPSFHEGI 269
++ + +++ + D W ++ + V I
Sbjct: 412 KTTHVLLGTATPIQTDVEDMWDLLKILGMGAEHVIGDAWSEWRSTEKVVPVITG------ 465
Query: 270 IARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ D D P + I ++ A+ P + ++
Sbjct: 466 KRKVTDDRDAW-SLFRNPLPASAENEVI-FGLMRGAIEM-----PPTRYVTQKGFSDIND 518
Query: 330 DNT 332
D
Sbjct: 519 DFC 521
>gi|115353258|ref|YP_775097.1| YaeQ family protein [Burkholderia ambifaria AMMD]
gi|115283246|gb|ABI88763.1| YaeQ family protein [Burkholderia ambifaria AMMD]
Length = 207
Score = 37.2 bits (84), Expect = 6.7, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
D + + F L E L P WQ + +D P+ +
Sbjct: 60 DDRMMVRIVAFALFAHERLEFSKGLSDVDEPDLWQKDLTGAIDVWIEAG----QPDERRI 115
Query: 81 AISAGR 86
+ +AGR
Sbjct: 116 SKAAGR 121
>gi|153852664|ref|ZP_01994101.1| hypothetical protein DORLON_00075 [Dorea longicatena DSM 13814]
gi|149754306|gb|EDM64237.1| hypothetical protein DORLON_00075 [Dorea longicatena DSM 13814]
Length = 292
Score = 37.2 bits (84), Expect = 6.8, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 6/169 (3%)
Query: 68 NSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWA- 126
+ ++ P AI G GK+TL L + L+ P + + +T K LW
Sbjct: 27 DGISLDIPSGQFVAILGPNGSGKSTLAKHLNVLLL---PNEGTVWIDGKDTHAKERLWEI 83
Query: 127 --EVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTF 184
+V N+ + P ++ + + + + +
Sbjct: 84 RSQVGMVFQNPDNQIIGTSVEEDVAFGPENKNIEPEKIRKIVETVLRKVKLWDRRKASPS 143
Query: 185 VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRL 233
D +G P + L + + ++ + I
Sbjct: 144 RLSGGQKQRLATADALAGLPACLVLDEPTAMLDPDSRKEVINIVKELNR 192
>gi|50954856|ref|YP_062144.1| hypothetical protein Lxx11930 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951338|gb|AAT89039.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 595
Score = 37.2 bits (84), Expect = 6.8, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 19/90 (21%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
WG G R+WQ E ++ A E +A G GKTT L
Sbjct: 25 WGTAGK-------LRAWQAEALDAYFA----------TEPRDFLAAATPGAGKTTFALRL 67
Query: 98 VLWLMSTRPGISVICLANSETQLKTTLWAE 127
L+S R V +A +E + WAE
Sbjct: 68 ATELLSRRTVERVTVVAPTEHLKRQ--WAE 95
>gi|190573927|ref|YP_001971772.1| putative DNA packaging protein gp17 [Stenotrophomonas maltophilia
K279a]
gi|190011849|emb|CAQ45469.1| putative DNA packaging protein gp17 (terminase) [Stenotrophomonas
maltophilia K279a]
Length = 517
Score = 37.2 bits (84), Expect = 7.0, Method: Composition-based stats.
Identities = 24/186 (12%), Positives = 51/186 (27%), Gaps = 22/186 (11%)
Query: 85 GRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQ 144
R G TT L + + +A++ ++V LP+
Sbjct: 61 SRQHGITTWACIRALDMALFKKNTKAGVVAHTAGDAAKFFRSKVLYAYDNLPDWLKKIRP 120
Query: 145 SLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDE----A 200
++ + + + V H + E
Sbjct: 121 AVRRDMRDGVLE------------------LANGSSIEVSVSHRGGTLTFLHISEYGPMC 162
Query: 201 SGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEG 260
+ P+ G L + ++ S +G FYE ++ ++ + T +
Sbjct: 163 AMYPERAGEVASGALNAIASGNIVVIESTAYGAAGDFYERCQMAIELDRQIRAGTAKLTA 222
Query: 261 IDPSFH 266
+D FH
Sbjct: 223 MDYRFH 228
>gi|305680923|ref|ZP_07403730.1| sodium extrusion ABC transporter, ATP-binding protein NatA family
protein [Corynebacterium matruchotii ATCC 14266]
gi|305659128|gb|EFM48628.1| sodium extrusion ABC transporter, ATP-binding protein NatA family
protein [Corynebacterium matruchotii ATCC 14266]
Length = 325
Score = 37.2 bits (84), Expect = 7.1, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 52/166 (31%), Gaps = 9/166 (5%)
Query: 75 PEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-----PGISVICLANSETQLKTTLWAEVS 129
P+ AI G GKTTL+ L WL T G V+ A Q ++
Sbjct: 46 PQGEATAILGVNGAGKTTLSKILATWLYPTSGTVNIFGADVVTAAAHARQHIVAVFGGDR 105
Query: 130 KWLSLLPNKHWFE----MQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFV 185
+L ++ +L S + L + ++R V
Sbjct: 106 GLYPMLTAWENLSYFAAIRGAALPKPQLASILDSVGLADAAHRRVEEYSKGMKQRLHIAV 165
Query: 186 GHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPR 231
G + ++++ G + + G L E I+ ++
Sbjct: 166 GLSANAPILLLDEPTVGLDPIEAARLRGTLAELKNRGKTIILTSHN 211
>gi|121607731|ref|YP_995538.1| ABC transporter-like protein [Verminephrobacter eiseniae EF01-2]
gi|121552371|gb|ABM56520.1| ABC transporter related [Verminephrobacter eiseniae EF01-2]
Length = 505
Score = 37.2 bits (84), Expect = 7.1, Method: Composition-based stats.
Identities = 35/337 (10%), Positives = 85/337 (25%), Gaps = 38/337 (11%)
Query: 81 AISAGRGIGKTTLNAWLVLWLMSTRPGISVIC---------LANSETQLKTTLWAEVSKW 131
AI G GK+TL L ++I + +SE + E++
Sbjct: 32 AIVGENGAGKSTLMKILSGVYPHGSYSGAIIFDGQERRFQGIPDSERLGVAIIHQELALV 91
Query: 132 LSLLPNKHWFEMQSLS----LHPAPWYSDVL----HCSLGIDSKHYSTMCRTYSEERPDT 183
L ++ F + + +S L + ++ +
Sbjct: 92 PLLSIAENVFLGNETARCGVIDAMAAHSRTQALLRKVGLQASPETLVAHLGVGQQQLVEI 151
Query: 184 FVGHHNTYGMAIINDEASGTPD-VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
+ I+++ + + + L + I+ S+ + +
Sbjct: 152 AKALSRKVRLLILDEPTASLNENDSQALLNLLLELKGQGITCILISHKLNEISRVADQIT 211
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDS----------DVTRVE-VCGQFPQQ 291
D +D + + ++ R D V V Q PQ+
Sbjct: 212 ILRDGSTVETMDCCAGPVSEDRVIQAMVGREMADRYPQRVPKIGATVFEVRNWHAQHPQR 271
Query: 292 DIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+FI + ++ + ++ G I
Sbjct: 272 SDRAFI------QGIDLHVRRGEIVGIAGLMGAGRTELAMSIFGRSWGHRIHGEVRLHGK 325
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLE 388
+ + ++ + D G + ++
Sbjct: 326 TVDVST---VEKAVRHGLAYVTEDRKGNGLVLNEDIQ 359
>gi|160897078|ref|YP_001562660.1| terminase [Delftia acidovorans SPH-1]
gi|160362662|gb|ABX34275.1| Terminase [Delftia acidovorans SPH-1]
Length = 586
Score = 37.2 bits (84), Expect = 7.1, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 48/179 (26%), Gaps = 27/179 (15%)
Query: 70 VNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRP--GISVICLANSETQLKTTLWAE 127
+ + R K+TL A + L+ G VI A + Q + ++
Sbjct: 111 KPDGTRRFTTALFAIARKNAKSTLAAIIALYCQCCEDEVGPQVITAATTFDQA-SIVFKV 169
Query: 128 VSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVG- 186
+ + N + + + + S G K T P V
Sbjct: 170 AKRMVEAKAN------LRSAFNLQAFAKAIASYSNGGTFKALHAKASTQDGLNPSCTVLD 223
Query: 187 ---HHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFN 242
H + + + A+G R + +T+ G + E
Sbjct: 224 ELHAHKDHDLMNVLKSAAG--------------GRGNPLWLYLTTEGYDNPGPWSEERE 268
>gi|260654704|ref|ZP_05860194.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
gi|260630720|gb|EEX48914.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1]
Length = 1181
Score = 37.2 bits (84), Expect = 7.2, Method: Composition-based stats.
Identities = 34/264 (12%), Positives = 63/264 (23%), Gaps = 7/264 (2%)
Query: 56 LEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR-PGISVICLA 114
E ++ +SAG G GKT AW LW M+ P S++ L
Sbjct: 16 KELLQKSA--LPEQAEAATSSERLTVVSAGAGTGKTWTLAWRFLWCMAQGAPAPSILTLT 73
Query: 115 NSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCR 174
+E + + + LS + + + +
Sbjct: 74 FTEKAAEEMRSRIAALTEGVARQAKEAGCVRLSEVLNEGRRCLDSAYISTIHGFCLRVIK 133
Query: 175 TYSEERPDTF--VGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRR 232
P + A L+ W +
Sbjct: 134 ETGLSLPVSPSCRLVSAPEEEFFWRQVADALEKNDAGWFANRLSCSPGRADWPSVLSSPW 193
Query: 233 LSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQD 292
+ + +D +F +E E + G + +V P+
Sbjct: 194 TADVL--NGREQANDIAQFSRAAENLETARGGAPEDLWRSEGREKEVIESLRAAYEPEAR 251
Query: 293 IDSFIPLNIIEEALNREPCPDPYA 316
F I+ +A R +
Sbjct: 252 AQVFRLRRILRDAAVRNLLENGKG 275
>gi|313216756|emb|CBY38004.1| unnamed protein product [Oikopleura dioica]
Length = 1046
Score = 37.2 bits (84), Expect = 7.2, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 23/177 (12%)
Query: 44 PLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS 103
L FS Q + + H N+ + A G GKT +L +
Sbjct: 203 ALYSFSHFNPIQTQVFHCLYHHDSNA-----------LVGAPTGSGKTACAELSMLKVFR 251
Query: 104 TRPGISVICLANSETQLKTTLWAEVSKW-LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSL 162
P + +A + +K + W L ++ + V +
Sbjct: 252 DYPNGKCVYIAPLKALVKERM----DDWSKKLGGKLGKKLVEMTGDIAPDQKAIVSADII 307
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERN 219
+ + + R++ + I+ DE + + +T N
Sbjct: 308 ITTPEKWDGISRSWQTRKYVR-------DVRLIVIDEIHMLGEDRGPVLESIVTRTN 357
>gi|239941274|ref|ZP_04693211.1| hypothetical protein SrosN15_09791 [Streptomyces roseosporus NRRL
15998]
gi|239987730|ref|ZP_04708394.1| hypothetical protein SrosN1_10528 [Streptomyces roseosporus NRRL
11379]
gi|291444714|ref|ZP_06584104.1| phage terminase [Streptomyces roseosporus NRRL 15998]
gi|291347661|gb|EFE74565.1| phage terminase [Streptomyces roseosporus NRRL 15998]
Length = 558
Score = 37.2 bits (84), Expect = 7.5, Method: Composition-based stats.
Identities = 59/526 (11%), Positives = 126/526 (23%), Gaps = 98/526 (18%)
Query: 33 LHFFPWGEKGTPLEGFSA-----PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRG 87
+ W + G P Q EF+ V +G +S RG
Sbjct: 17 YYVLDWMIENLAQPGRDDGEPFVPSQEQAEFLCDYYEL---HPVTGKRIVHRGLLSRPRG 73
Query: 88 IGKTTLNAWLVL----------------------WLMSTRPGISVICLANSETQLKTTLW 125
GK+ + L W P + + A Q W
Sbjct: 74 WGKSPFVGAIALAEACADVVPDGFDAYGEPIGRPWHSIRTPLVRI---AAVTEQQTDNTW 130
Query: 126 AEVSKWLS--LLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRT-YSEERPD 182
+ + L + E+ ++ + S + +EE +
Sbjct: 131 VPLLEMARGGSLSTDYGLEVLDTVIYLPRGEISPITSSATSVKGDPACFASLDQTEEWKE 190
Query: 183 TFVGHHNTYGMAI---------INDEASGTP-----DVINLGILGFLTERNANRFWIMTS 228
+ G + I + TP + + + + I+
Sbjct: 191 SNGGVKLAKTLRFNAVKLGGSIIETPNAYTPGEGSVAENSAADYQAILDGRSRARGILVD 250
Query: 229 NPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGI----DPSFHEGIIARYGLDSDVT---- 280
+ + + D+ DP G G+
Sbjct: 251 HREAPGDTDMTDEQSLVAGLRYAYGDSSDHPDGCVLHDPPCAPGWSPIEGITGAFWDTSN 310
Query: 281 -----RVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG----DN 331
R + Q + A + + + +++G D + + D
Sbjct: 311 EPQDLRADFLNQITHAADAWLSQPE-VRAATDLDRVVEDDDRIVLGFDGSRKRSRGVTDA 369
Query: 332 TVV--VLRRGPVIEHLFDWSKT----------------DLRTTNNKISGLVEKYRPDAII 373
T + + + W + + K+ +Y +
Sbjct: 370 TALIGCRLSDGHLFEIGVWEQPKGWKPPAGEPGEGWQVPVVEVLAKVHETFRRYDVVGMY 429
Query: 374 IDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMAD----WLEFASL 429
D + D+ G + + ++ R+ L V+ + L L
Sbjct: 430 ADPAKWESHVADWEAAYGPQLKVQSTRNHPIEWWMTGG-RSTLIVRALEKFHTALTECEL 488
Query: 430 INH--SGLIQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLM 473
S L+++L + + + + I S D D +
Sbjct: 489 TLDGASALVRHLLNSRRRKTRSG--IQIM---KANPDSPDKIDAAI 529
>gi|194302950|ref|YP_002014219.1| gp3 [Mycobacterium phage Boomer]
gi|194152998|gb|ACF34065.1| gp3 [Mycobacterium phage Boomer]
Length = 453
Score = 36.8 bits (83), Expect = 7.6, Method: Composition-based stats.
Identities = 55/464 (11%), Positives = 117/464 (25%), Gaps = 42/464 (9%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
WQ + + + +I+ R GKT ++ + +RPG V+
Sbjct: 6 DRWQEDIWYAALGLREDGTLACDVMGVTLSIA--RQAGKTWGIMVGLIAICLSRPGTLVV 63
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
++ + TL M + + S +
Sbjct: 64 WSSHHDRTSSETLTKIAGIVEKPAIRPKMRPMHPVVQSDDNRGVHFANGSRILFGARAQG 123
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEAS-GTPDVINLGILGFLTERNANRFWIMTSNP 230
R +SE + N A+ + A+ ++ +G + +
Sbjct: 124 FGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGTPPRPQEVALGVHDAFK 183
Query: 231 RRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQ 290
RR + +P + + G R + V +
Sbjct: 184 RRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDRLAEANPSFGHRVGKSAIE 243
Query: 291 QDIDSFIPLNIIEEALNREPC------PDPYAPLI-MGCDIAEEGG-DNTVVVLRRGPVI 342
+ +++ P ++ E P + CD+ + G V R
Sbjct: 244 RLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVDDLGDVSAFGVSATRSGWF 303
Query: 343 EHLFDWSKTDL---------RTTNNKISGLVEKYRPDAIII--DANNTGARTCDYLEMLG 391
+ WS D + + + Y I D+ + L+ L
Sbjct: 304 WIVACWSGVDDGVHVEIALGTQSEVEAVDFLRAYASRKTPIKHDSVGAAKALGEKLKQLK 363
Query: 392 YHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLIN--HSGLIQNLKSLKSFIVPN 449
+ + N L V + ++ L + + L ++ P+
Sbjct: 364 -----FKSSVYSSNESVAGN---ALWVSL---VDQGRLTHGGQAELDVAVRGATRKDRPS 412
Query: 450 TGELAIESKRVKGAKSTDYSDGLMY--TFAENPPRSDMDFGRCP 491
G + + A+S D + G
Sbjct: 413 GGWMMMPR-----AESFDIGPAIAMSAAVYAAVTSKPRSSGGAS 451
>gi|322702554|gb|EFY94192.1| DEAD/DEAH box helicase, putative [Metarhizium anisopliae ARSEF 23]
Length = 1010
Score = 36.8 bits (83), Expect = 7.6, Method: Composition-based stats.
Identities = 30/231 (12%), Positives = 65/231 (28%), Gaps = 20/231 (8%)
Query: 23 EIKLSFSNFVL-HFFPW---GEKGTPLEGFS-APRSWQLEFMEVVDAHCLNSVNNPNPEV 77
EI + F L + P+ G +P +P +WQ ++ +DA+
Sbjct: 386 EIPVDPLEFQLSYCGPYLERGFDSSPDARVPFSPDAWQRTVLDAIDANK----------- 434
Query: 78 FKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPN 137
+ A GKT ++ + + ++ + ++ +A ++ + AEV S +
Sbjct: 435 -SLFVVAPTSAGKTFISFYAMKKVLQSNDDDVLVYVAPTKALVNQIA-AEVQARFSKAYS 492
Query: 138 KHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIIN 197
+ ++ + L M S + + +
Sbjct: 493 TQGKSVWAVHTRDYRINNPTGCQVLITVPHILQIMLLAPSNSKTASSWALRVKRIIFDEV 552
Query: 198 DEASGTPDVINLGILGFLTERNANRFWIMT-SNPRRLSGKFYEIFNKPLDD 247
+ D + L T NP + D
Sbjct: 553 HCIGQSDDGVI-WEQLLLLAPCPIIALSATVGNPMEFNDWLRGSEEAKGHD 602
>gi|315656918|ref|ZP_07909805.1| prophage LambdaSa04 protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492873|gb|EFU82477.1| prophage LambdaSa04 protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 534
Score = 36.8 bits (83), Expect = 7.7, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 77/297 (25%), Gaps = 28/297 (9%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS--TRPGISV 110
WQ + + + + + +GK+ L A + L L V
Sbjct: 50 DWQEQIIRDLFGTVKADGYRQFTTA---YVEIPKKMGKSELAAAVALLLTCGDGEERAEV 106
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
A Q + ++ + + + P ++ L+ Y + ++ YS
Sbjct: 107 YGCAADRQQA-SIVFEVAADMVRMSPA-LSKRVKILASQKRIIYKPTNSFYQVLSAEAYS 164
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
S F H G A+ + G+ D + +T + I
Sbjct: 165 KHGFNIS---GVVFDELHTQPGRALFDVMTKGSGDARTQPLYFLITTAGTDTHSICYEQH 221
Query: 231 RRLSGKFYEIFNKP-----------LDDWKRFQIDTRTVEGIDPSF-HEGIIA------R 272
+ + P DDW + + + + E + +
Sbjct: 222 EKAEDILAGKKHDPTFYPVIYGAEREDDWTDEDVWHKANPSLGITVPIEKVRQACTSAKQ 281
Query: 273 YGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG 329
+ + R Q+ +Q + + G D+A
Sbjct: 282 NPAEENTFRQLRLNQWVKQSVRWMPMHVWNANNAPVDLSDLEGRVCYGGLDLASTTD 338
>gi|325978229|ref|YP_004287945.1| DNA endonuclease, type III restriction and modification system
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|325178157|emb|CBZ48201.1| DNA endonuclease, type III restriction and modification system
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
Length = 928
Score = 36.8 bits (83), Expect = 7.9, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 7/178 (3%)
Query: 52 RSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVI 111
R++Q + + NP +F A G GKT L A L+L+L + +
Sbjct: 49 RTYQDKAIRNYHYTQTQIKPNPQHVLFNMAT----GSGKTDLMAGLILYLYQEHGYRNFL 104
Query: 112 CLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYST 171
N+ + L T V++ ++ E+ + + D+ Y
Sbjct: 105 FTVNTNSVLMKTKDNLVNENSEKYLFQNKIEIDGKHIFIKQVE---RFPRIQQDNTIYIK 161
Query: 172 MCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSN 229
+ + + N + D + +E+ A W N
Sbjct: 162 LSSVQKVSDDLFVLKENTMGLSDYENQPVAVLADEAHHYSASTKSEKEAENTWESAIN 219
>gi|225023085|ref|ZP_03712277.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
ATCC 33806]
gi|224944308|gb|EEG25517.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii
ATCC 33806]
Length = 894
Score = 36.8 bits (83), Expect = 7.9, Method: Composition-based stats.
Identities = 60/455 (13%), Positives = 125/455 (27%), Gaps = 58/455 (12%)
Query: 62 VDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTR---PGISVICL----- 113
+ I AG G GKT + + +L+ R PG +
Sbjct: 96 IADLNPQQRAAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLLRMRGVAPGQILAITFTNKA 155
Query: 114 -ANSETQLKTTLWAEVSKWL---------SLLPNKHWFEMQSLSLHPAPWYSDVLHCSLG 163
A ++ + ++ +L + + L+ + + +D LG
Sbjct: 156 AAEMRDRVIDLVGPTATRMWVATFHSACVRILREQAHL-LPGLNTNFTIYDADDSKRLLG 214
Query: 164 IDSKHYSTMCRTYSEERPDTFVGHHNTYGM--AIINDEASGTPDVINLGILGFLTERNAN 221
+ +K + + + T +DEA+ T + + I TE
Sbjct: 215 MIAKDLQINAQKFPPRLLAAAISALKTELTDPDAASDEAAATRNPFDRTIAEVYTEYQRR 274
Query: 222 RFWIMTSNPRRLSGKFYEIFNKPLD-----DWKRFQIDTRTVEGIDPSFHEGIIARYGLD 276
+ L G+ +F + + + + + + + I G+
Sbjct: 275 LRAANALDFDDLIGETVRVFTTHPEIAAYYRKRFRHVLIDEYQDTNHAQYVLISTLVGIG 334
Query: 277 SDVTRVEVCGQFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIMGCDIAEEGG----DNT 332
SD + + V G I E +++ + N
Sbjct: 335 SDASELSVVGD--SDQSIYAFRGATIRNIEEFERDYPQARTILLEQNYRSTQNILSAANA 392
Query: 333 VVVLRRGPVIEHLFDWSKTDLRTTNNKISGLVEKYRPDAIIID---ANNTGARTCDYLEM 389
V+ G + L+ + T ++ R A ID G
Sbjct: 393 VISHNHGRREKKLWTDHGAGAKITGYVADNEHDEARFIATEIDALFDTGVGYG------- 445
Query: 390 LGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLINHSGLIQNLKSLKSFIVPN 449
V E RT + K+ + I++L + +
Sbjct: 446 -DIAVMYRTNNSSRAIEEVF--IRTGIPYKV----VGGTRFYERKEIRDLIAYLRVLDNP 498
Query: 450 TGELAIESKRVKGAKST-----DYSDGLMYTFAEN 479
T E+++ + + D + + +AEN
Sbjct: 499 TDEISL----RRIINTPRRGIGDRAIATVNLYAEN 529
>gi|126461416|ref|YP_001042530.1| phage terminase [Rhodobacter sphaeroides ATCC 17029]
gi|126103080|gb|ABN75758.1| phage Terminase [Rhodobacter sphaeroides ATCC 17029]
Length = 583
Score = 36.8 bits (83), Expect = 7.9, Method: Composition-based stats.
Identities = 58/414 (14%), Positives = 103/414 (24%), Gaps = 41/414 (9%)
Query: 19 MWSDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVF 78
+W E +F E E F Q + +
Sbjct: 39 VWDLEAAHRALDFFPQVLRLSEGQFDGEPFEL-HPSQQFIVGSLFGWKRAEGTR---RFR 94
Query: 79 KGAISAGRGIGKTTLNAWLVLWLMSTRPG--ISVICLANSETQLKTTLWAEVSKWLSLLP 136
+ I G+G GK+ L + L+ M V A Q + L+ + + P
Sbjct: 95 RAYIEQGKGNGKSPLAGGIGLYGMMADREAGAQVYAAAAKMDQAR-ILFGDAVSMVRQSP 153
Query: 137 NKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAII 196
+ ++P +D + DT ++
Sbjct: 154 L-LESRITPTGVNPVNNLAD-------------LRTGSFFRPLGRDTGKTGSGLRPHFVL 199
Query: 197 NDEASGTPD-VINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIF-------NKPLDDW 248
DE P + R ++T++ + +E + ++D
Sbjct: 200 LDELHEHPSRDTLEMLERGFKFRRQPLLLMITNSGSDRNSVCWEEHVHAVAVAHGEVEDD 259
Query: 249 KRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNIIEEALNR 308
F EG DP + VT E + IP
Sbjct: 260 TTFSFVCSLDEGDDPLNDPSCWKKANPLLGVTLSEAYLADVAAQARA-IPGKANGILRLH 318
Query: 309 EPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNN-KISGLVEKY 367
+ + E D ++ R E W DL T + LV +
Sbjct: 319 FCVWTDAEAAWIARETWEACEDASL----RLDDFEGEDAWVGLDLGATKDLTWRALVFRD 374
Query: 368 RPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRT--ELHVK 419
+D + + ++ A E + + EL VK
Sbjct: 375 GMTEERVDE--ATGQVIPP--QQKFVLFGQGFTPGATLKERAKRDKAPYELWVK 424
>gi|171316359|ref|ZP_02905579.1| YaeQ family protein [Burkholderia ambifaria MEX-5]
gi|171098488|gb|EDT43290.1| YaeQ family protein [Burkholderia ambifaria MEX-5]
Length = 184
Score = 36.8 bits (83), Expect = 8.0, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
D + + F L E L P WQ + +D P+ +
Sbjct: 37 DDRMMVRIVAFALFAHERLEFSKGLSDVDEPDLWQKDLTGAIDVWIEAG----QPDERRI 92
Query: 81 AISAGR 86
+ +AGR
Sbjct: 93 SKAAGR 98
>gi|302339290|ref|YP_003804496.1| hypothetical protein Spirs_2799 [Spirochaeta smaragdinae DSM 11293]
gi|301636475|gb|ADK81902.1| conserved hypothetical protein [Spirochaeta smaragdinae DSM 11293]
Length = 225
Score = 36.8 bits (83), Expect = 8.1, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 3/89 (3%)
Query: 344 HLFDWSKTDLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM---LGYHVYRVLGQ 400
D+ KI +E + A+++DA G + + L + G
Sbjct: 57 ERMKMKYPDVVREVKKIVTALENDQTTALLVDATGVGLPVVEMMREDLLLPIPIIITGGN 116
Query: 401 KRAVDLEFCRNRRTELHVKMADWLEFASL 429
+ + L + E L
Sbjct: 117 SISEQNGGFHIPKRFLVAALQGLFETGRL 145
>gi|319791804|ref|YP_004153444.1| ABC transporter [Variovorax paradoxus EPS]
gi|315594267|gb|ADU35333.1| ABC transporter related protein [Variovorax paradoxus EPS]
Length = 521
Score = 36.8 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 41/338 (12%), Positives = 88/338 (26%), Gaps = 38/338 (11%)
Query: 81 AISAGRGIGKTTLNAWLV-LWLMSTRPGI--------SVICLANSETQLKTTLWAEVSKW 131
A+ G GK+TL L ++ + G +A+SE + E++
Sbjct: 41 AVVGENGAGKSTLMKVLSGVYPCDSYTGEIHFEGELRRFKTIADSEKLGIIIIHQELALV 100
Query: 132 LSLLPNKHWFEMQSLSL-----HPAPWYSDVL---HCSLGIDSKHYSTMCRTYSEERPDT 183
L ++ F ++ A + L T ++ +
Sbjct: 101 PLLSIAENLFLGNEIASGGVIDWFAAYARTRELLAKVGLKELPTTLVTDLGVGKQQLVEI 160
Query: 184 FVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFW-IMTSNPRRLSGKFYEIFN 242
+ I+++ + + + +L L E I+ S+ K +
Sbjct: 161 AKALAKEVKLLILDEPTASLNENDSDALLMLLLELKRQGIASILISHKLNEIAKVADSIT 220
Query: 243 KPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFIPLNI- 301
D ID R+ + G++ G D + P+ F +
Sbjct: 221 VLRDGATVETIDCRSDPISEDRIIRGMV---GRD---MEHRYPQRSPKIGETVFEVRDWR 274
Query: 302 IEEALNREPCPDPYAPLIMG----------CDIAEEGGDNTVVVLRRGPVIEHLFDWSKT 351
+ AL+ + L + +V G I
Sbjct: 275 VHHALHADREQIKGVNLHVRQGEIVGIAGLMGAGRTELAMSVFGKSYGQRISGSVLMHGK 334
Query: 352 DLRTTNNKISGLVEKYRPDAIIIDANNTGARTCDYLEM 389
+ + + + D G + +
Sbjct: 335 PVDVST---VRKAIDHGIAYVTEDRKGLGLVLEEGIRK 369
>gi|322703686|gb|EFY95291.1| DEAD/DEAH box helicase, putative [Metarhizium anisopliae ARSEF 23]
Length = 1561
Score = 36.8 bits (83), Expect = 8.3, Method: Composition-based stats.
Identities = 23/196 (11%), Positives = 53/196 (27%), Gaps = 14/196 (7%)
Query: 51 PRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISV 110
P +WQ + ++ +DA+ + A GKT ++ + + ++ + +
Sbjct: 498 PDAWQRDVLDAIDANK------------SLFVVAPTSAGKTFVSFYAMKKVLQSNDDDVI 545
Query: 111 ICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYS 170
+ +A ++ + AEV S + + ++ + L
Sbjct: 546 VYVAPTKALVNQIA-AEVQARFSKAYSTPGRSVWAIHTRDYRINNPTGCQILITVPHMLQ 604
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANRFWIMTSNP 230
M S + + G D + L T
Sbjct: 605 IMLLAPSNAKTANSWSLRVKRIIFD-EVHCIGQSDEGVIWEQLLLLAPCPIIALPATVGN 663
Query: 231 RRLSGKFYEIFNKPLD 246
G + + K
Sbjct: 664 PMDFGAWLQGSEKAKG 679
>gi|209693834|ref|YP_002261762.1| DNA-dependent helicase II [Aliivibrio salmonicida LFI1238]
gi|208007785|emb|CAQ77907.1| DNA helicase II UvrD [Aliivibrio salmonicida LFI1238]
Length = 734
Score = 36.8 bits (83), Expect = 8.4, Method: Composition-based stats.
Identities = 36/366 (9%), Positives = 80/366 (21%), Gaps = 50/366 (13%)
Query: 82 ISAGRGIGKTTLNAWLVLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWF 141
+ AG G GKT + + WLM ++ + T NK
Sbjct: 27 VLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFT------------------NKAAA 68
Query: 142 EMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTY--GMAIINDE 199
EM+ + + H + P+ F + + +
Sbjct: 69 EMRGRIEELMHGSAGGMWNGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIK 128
Query: 200 ASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVE 259
A D + + E + K ++ +Q
Sbjct: 129 AQNLDDKNWPARQAAWFINGKKDEGLRPHQINSFNDPIAETWLKV---YRAYQEACDRSG 185
Query: 260 GIDPSFHEGIIARYGLDSDV----TRVEVCGQFPQQ-DIDSFIPLNIIEEALNREPCPDP 314
+D + D + + + I + +
Sbjct: 186 LVDFAEILLRAHELLRDHQYICEHYQARFKHILVDEFQDTNNIQYAWLRMMAGSDCKVMI 245
Query: 315 YAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLF----DWSKTDLRTTNNKISGLVEKYRPD 370
D+ + RG IE++ ++
Sbjct: 246 VG------------DDDQSIYGWRGAQIENIQRFLNEFVGAKTILLEQNYRSTANILNAA 293
Query: 371 AIIIDANNTGARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMADWLEFASLI 430
+I N + E + + +D K+ +W + +
Sbjct: 294 NELISNNTERMGKELWTEDADGELISIYSAYNEMDEARFA------VGKIKEWRDNGGAL 347
Query: 431 NHSGLI 436
+ +
Sbjct: 348 EDTAFL 353
>gi|156543742|ref|XP_001605981.1| PREDICTED: similar to conserved hypothetical protein [Nasonia
vitripennis]
Length = 1277
Score = 36.8 bits (83), Expect = 8.4, Method: Composition-based stats.
Identities = 30/240 (12%), Positives = 57/240 (23%), Gaps = 25/240 (10%)
Query: 53 SWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVIC 112
W + + + +V I G GKT +L ++ T ++
Sbjct: 808 KWFNKRLNKYQKEAVKNVLKGLARPLPYVIFGPPGTGKTITVCEAILQILFTMSESRILI 867
Query: 113 LANSETQLKTTLWAEVSKW------LSLLPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDS 166
S + + L L H+ E +S+ P+ S G
Sbjct: 868 ATPSNSSANLIAERLLDSNLLKPGDLIRLVAHHYLESESIPEKLIPYCVTADIASEGSRG 927
Query: 167 KHYSTMCRTYSEERPDTFVGHH-------------------NTYGMAIINDEASGTPDVI 207
R + + H + + +I DEA +
Sbjct: 928 DVNHIDPRGCKTNVTLSVLCQHRMIIGTCSALGILYNMGCKSDHFTHVIVDEAGQACEPE 987
Query: 208 NLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHE 267
+ L + L+D ++ + DP E
Sbjct: 988 IMIPLSLAHSGTTQVILAGDPKQLGPVNQSRLAGYYGLNDSFLVRLLQQFPYQRDPEGFE 1047
>gi|258545380|ref|ZP_05705614.1| portal protein [Cardiobacterium hominis ATCC 15826]
gi|258519349|gb|EEV88208.1| portal protein [Cardiobacterium hominis ATCC 15826]
Length = 478
Score = 36.8 bits (83), Expect = 8.4, Method: Composition-based stats.
Identities = 31/218 (14%), Positives = 54/218 (24%), Gaps = 33/218 (15%)
Query: 299 LNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTNN 358
+ A + C PL+ D E R G + + D R
Sbjct: 268 PAELRSADIADWCERELRPLLATLDGTREHVFGMDFA-RHGDLSVLVPLQIAADTRRHVP 326
Query: 359 KISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQK---RAVDLEFCRNRRTE 415
L I D L L + G + NR +
Sbjct: 327 FAVELRNIPHAQQRQIVYY-----LLDRLPRLTAAWFDASGNGEYLAEAAHDRYGNRVAQ 381
Query: 416 -----LHVK-----MADWLEF--ASLINHSGLIQNLKSLKSFIVPNTGELAI-ESKRVKG 462
+ LE + + +I +L++L+ G + + G
Sbjct: 382 IKLSNAWYSEHMPPLVAALEDDALRIPKDADIIDDLRALERID----GVIKLGRRSGKAG 437
Query: 463 AKSTDYSDGLMYTFAE-------NPPRSDMDFGRCPSY 493
+ D + L +A + D P+Y
Sbjct: 438 ERHGDAAIALCLAYAASRSNTALPVTVAIEDGYTKPAY 475
>gi|302879980|ref|YP_003848544.1| type III restriction protein res subunit [Gallionella
capsiferriformans ES-2]
gi|302582769|gb|ADL56780.1| type III restriction protein res subunit [Gallionella
capsiferriformans ES-2]
Length = 1010
Score = 36.8 bits (83), Expect = 8.6, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 12/89 (13%)
Query: 38 WGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWL 97
W G P Q E ++ + + + + G GK+ ++
Sbjct: 170 WLHSGRITLSRKHPLPHQQEALDAIADGLQTND--------RATVVMACGTGKSLVS--- 218
Query: 98 VLWLMSTRPGISVICLANSETQLKTTLWA 126
LW R +++ L S ++ L
Sbjct: 219 -LWAAEQRECKAILVLVPSLALVRQLLHE 246
>gi|148747835|ref|YP_001285801.1| terminase [Phormidium phage Pf-WMP3]
gi|146230068|gb|ABQ12476.1| terminase [Phormidium phage Pf-WMP3]
Length = 565
Score = 36.8 bits (83), Expect = 8.6, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 50/176 (28%), Gaps = 11/176 (6%)
Query: 35 FFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLN 94
F W L GF R F + + + + + + + A RG K+T+
Sbjct: 16 FDIW--AFADLIGFRGGRKSFGAFHYELTDFLTQTQQHEDKDNRRRLVLAPRGHLKSTVC 73
Query: 95 AWL-VLWLMSTRPGISVICLANSETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPW 153
+ L VLW + P I V+ N + + ++ L ++
Sbjct: 74 SVLYVLWRIYRNPDIRVLVGTNLKRLSRA--------FIRELRQYFEDTWLQQNVWNVRP 125
Query: 154 YSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINL 209
+ + S + + + + + + + +
Sbjct: 126 HIEGALVPALSASDRRKRNSQRNNVDYDEALATLTDDTKLIWSMEALQVIRPTVMK 181
>gi|145301186|ref|YP_001144027.1| multidrug transporter membrane component/ATP-binding component
[Aeromonas salmonicida subsp. salmonicida A449]
gi|142853958|gb|ABO92279.1| ABC-type hydroxamate-type ferric siderophore transporter,
ATP-binding protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 548
Score = 36.8 bits (83), Expect = 8.6, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 17/180 (9%)
Query: 51 PRSWQLEFMEVVDAHCLNSVN-------NPNPEVFKGAISAGRGIGKTTLNAWLVLWLMS 103
PR+WQ +E V H + + I G G GK+TL ++L +
Sbjct: 317 PRAWQRIQLEQVSFHYQGEGGFAVGPINLTIEKGEQVFIIGGNGSGKSTLA--MLLTGLY 374
Query: 104 TRPGISVICLAN--SETQLKTTLWAEVSKWLSLLPNKHWFEMQSLSLHPAPWYSDVLHCS 161
++ ++ L++ + L +H + + A W D L
Sbjct: 375 QPVSGRILLDGEPVTDRNAYLALFSAIFTDYHL--FQHLLGPEPKAELIAEW-LDRLQMG 431
Query: 162 LGIDSKHYSTMCRTYSEERPDTFVGHHN---TYGMAIINDEASGTPDVINLGILGFLTER 218
+ + S+ + + + ++ A+ L R
Sbjct: 432 SKLAIEDNFIADIDLSQGQRKRVALLLALAEQREVMLFDEWAADQDPQFRRIFYQLLLPR 491
>gi|319943331|ref|ZP_08017613.1| hypothetical protein HMPREF0551_0459 [Lautropia mirabilis ATCC
51599]
gi|319743146|gb|EFV95551.1| hypothetical protein HMPREF0551_0459 [Lautropia mirabilis ATCC
51599]
Length = 220
Score = 36.8 bits (83), Expect = 9.0, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 42/158 (26%), Gaps = 18/158 (11%)
Query: 54 WQLEFMEVVDAHCLNSVNNPNPEVFKGAISAGRGIGKTTLNAWLVLWLMSTRPGISVICL 113
WQ H + AI G GKTTL A L S PG V+
Sbjct: 32 WQASPRTAFVDHLMARAGTHAGRPAIIAIDGRSGSGKTTLTAAL----ASVVPGAQVL-- 85
Query: 114 ANSETQLKTTLWAE-VSKWLSLLPNKHWFEMQ--SLSLHPAPWYSDVLHCSLGIDSKHYS 170
L +W E + +W L +L L P PW S+ I +
Sbjct: 86 -----HLDDLIWNEPLYQWDQQLVAALSELHTTGALDLIPHPWREHGREGSIRITAG--- 137
Query: 171 TMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVIN 208
E + + + +
Sbjct: 138 -APLVIVEGTGAGLQAIRGLIDLHVWVQTGDDVTEHRD 174
>gi|107024086|ref|YP_622413.1| YaeQ [Burkholderia cenocepacia AU 1054]
gi|116691172|ref|YP_836795.1| YaeQ family protein [Burkholderia cenocepacia HI2424]
gi|170734505|ref|YP_001766452.1| YaeQ family protein [Burkholderia cenocepacia MC0-3]
gi|254246835|ref|ZP_04940156.1| YaeQ [Burkholderia cenocepacia PC184]
gi|105894275|gb|ABF77440.1| YaeQ [Burkholderia cenocepacia AU 1054]
gi|116649261|gb|ABK09902.1| YaeQ family protein [Burkholderia cenocepacia HI2424]
gi|124871611|gb|EAY63327.1| YaeQ [Burkholderia cenocepacia PC184]
gi|169817747|gb|ACA92330.1| YaeQ family protein [Burkholderia cenocepacia MC0-3]
Length = 184
Score = 36.8 bits (83), Expect = 9.5, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
D + + F L E L P WQ + +D P+ +
Sbjct: 37 DDRMMVRIVAFALFAHERLEFCKGLSDVDEPDLWQKDLTGAIDVWIEAG----QPDERRI 92
Query: 81 AISAGR 86
+ +AGR
Sbjct: 93 SKAAGR 98
>gi|78067979|ref|YP_370748.1| YaeQ family protein [Burkholderia sp. 383]
gi|77968724|gb|ABB10104.1| YaeQ family protein [Burkholderia sp. 383]
Length = 184
Score = 36.8 bits (83), Expect = 9.7, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 21 SDEIKLSFSNFVLHFFPWGEKGTPLEGFSAPRSWQLEFMEVVDAHCLNSVNNPNPEVFKG 80
D + + F L E L P WQ + +D P+ +
Sbjct: 37 DDRMMVRIVAFALFAHERLEFCKGLSDVDEPDLWQKDLTGAIDVWIEAG----QPDERRI 92
Query: 81 AISAGR 86
+ +AGR
Sbjct: 93 SKAAGR 98
>gi|301310332|ref|ZP_07216271.1| phage terminase, large subunit, PBSX family [Bacteroides sp. 20_3]
gi|300831906|gb|EFK62537.1| phage terminase, large subunit, PBSX family [Bacteroides sp. 20_3]
Length = 422
Score = 36.4 bits (82), Expect = 10.0, Method: Composition-based stats.
Identities = 43/366 (11%), Positives = 105/366 (28%), Gaps = 51/366 (13%)
Query: 80 GAISAGRGIGKTTLNAWLV--LWLMSTRPGI---SVICLANSETQLKTTLWAEVSKWLSL 134
I+ GRG GK+ + + L T ++ + ++ E+ +
Sbjct: 20 ILITGGRGSGKSFNASTFIERLTFEMTEAEKIVHQILYTRYTMVSAGMSIIPEMME---- 75
Query: 135 LPNKHWFEMQSLSLHPAPWYSDVLHCSLGIDSKHYSTMCRTYSEERPDTFVGHHNTYGMA 194
++ + + S+ +T S +
Sbjct: 76 -------KIDLDGTTKYFKTTKTDIVNKMTKSRIMFRGIKTSSGNQTAKLKSIQGI-TTF 127
Query: 195 IINDEASGTPDVINLGILGFLTERNANRFWIMTSNPRRLSGKFYEIFNKPLDD------- 247
+ ++ T + I+ + ++ I+ NP + Y+ + +
Sbjct: 128 VCDEAEEWTNEEEFDKIMLSIRKKGIQNRIIIIMNPCDSNHFIYQKYIEKTHKLVEIDGV 187
Query: 248 -------WKRFQIDTR---TVEGIDPSFHEGIIARYGLDSDVTRVEVCGQFPQQDIDSFI 297
I T +E + P F + + + + V GQ+ +
Sbjct: 188 QVQISTHPNVLHIHTTYFDNLENLSPEFLKEVGDMKVNNPEKYAHVVIGQWADVAEGAVF 247
Query: 298 PLNIIEEALNREPCPDPYAPLIMGCDIAEEGGDNTVVVLRRGPVIEHLFDWSKTDLRTTN 357
I + RE + +G D + V ++ + +
Sbjct: 248 KKWGIVKEFPRECK-----KVGIGQDFGFTNDPSAAVRCGIIDNRLYVDELFYETDMLS- 301
Query: 358 NKISGLVEKYRPDAIIIDANNTGARTCDYLEMLGYHVYRVLGQKRA--------VDLEFC 409
S + + +P ++ + A++ R ++ G ++Y V + D+EF
Sbjct: 302 ---SAIANRLKPFSMKVFADSQDPRLIQEIKNRGVNIYPVDKFPGSIKAGIDKIKDMEFF 358
Query: 410 RNRRTE 415
R+
Sbjct: 359 VTERSY 364
>gi|217979168|ref|YP_002363315.1| protein of unknown function DUF264 [Methylocella silvestris BL2]
gi|217504544|gb|ACK51953.1| protein of unknown function DUF264 [Methylocella silvestris BL2]
Length = 435
Score = 36.4 bits (82), Expect = 10.0, Method: Composition-based stats.
Identities = 43/341 (12%), Positives = 88/341 (25%), Gaps = 52/341 (15%)
Query: 163 GIDSKHYSTMCRTYSEERPDTFVGHHNTYGMAIINDEASGTPDVINLGILGFLTERNANR 222
+ + + ++R + +G I +EAS P L L +
Sbjct: 94 ELGNGSRIWIGGLDDKDRVEKILGL---EYATIFLNEASQIPYSSALIAFTRLAQVAPRI 150
Query: 223 FWIMT--SNPRRLSGKFYEIFNKPLDDWKRFQIDTRTVEGIDPSFHEGIIARYGL----- 275
NP + ++F + D R + A
Sbjct: 151 DQRAFVDLNPVGKTHWTNQLFGEKRDPVSRRPLPDPESYRRAFLNPPDNKANLSREFLAS 210
Query: 276 ----DSDVTRVEVCGQFPQQDIDSFIPLNIIE--EALNREPCPDPYAPLIMGCDIAE--- 326
+ + G + + + I+ D A +++ D +
Sbjct: 211 LSHLPEKQRKRFLDGVYVDEVDGALWTYAGIDAGRCAAERISVDKRAAVVVAVDPSGAAG 270
Query: 327 ----EGGDNTVVVLRRG--PVIEHLFDWSKTD-LRTTNNKISGLVEKYRPDAIIIDANNT 379
+ ++V RG L D S D + +Y+ D+I+ ++N
Sbjct: 271 RDDLGADEIGIIVAARGVDGDAYILEDLSCRDAPAVWGRRAVVAFHRYQADSIVAESNFG 330
Query: 380 GARTCDYLEMLGYHVYRVLGQKRAVDLEFCRNRRTELHVKMA----DWLEFASLINHSGL 435
G ++ +V L R E + + L
Sbjct: 331 GEMVRATIQAADRNVPVKLVTASRGKA-----VRAEP-ISVRYAQGQVHHVGRFP---KL 381
Query: 436 IQNLKSLKSFIVPNTGELAIESKRVKGAKSTDYSDGLMYTF 476
L + + G G S D++D ++
Sbjct: 382 EDQLCA-----FSSAGY--------NGGGSPDHADAAIWAL 409
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.114 0.281
Lambda K H
0.267 0.0351 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,363,451,660
Number of Sequences: 14124377
Number of extensions: 72958863
Number of successful extensions: 400234
Number of sequences better than 10.0: 2462
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 1689
Number of HSP's that attempted gapping in prelim test: 397534
Number of HSP's gapped (non-prelim): 2670
length of query: 511
length of database: 4,842,793,630
effective HSP length: 144
effective length of query: 367
effective length of database: 2,808,883,342
effective search space: 1030860186514
effective search space used: 1030860186514
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 83 (36.8 bits)