Query gi|254781216|ref|YP_003065629.1| hypothetical protein CLIBASIA_05615 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 23:00:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781216.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2g8g_A Capsid; adeno-associat 17.9 56 0.0017 16.2 1.4 15 12-26 252-266 (348)
2 >2qa0_A Capsid protein; beta-b 15.8 61 0.0018 16.1 1.1 16 13-28 253-268 (348)
3 >3ei4_B DNA damage-binding pro 14.9 52 0.0015 16.4 0.6 14 1-14 16-29 (54)
4 >1bml_C Streptokinase; human p 13.7 39 0.0011 17.0 -0.4 23 13-35 16-38 (140)
5 >3gfh_A Ethanolamine utilizati 12.9 70 0.0021 15.8 0.8 12 2-13 68-79 (115)
6 >2on5_A Nagst-2, Na glutathion 10.2 70 0.0021 15.8 0.0 33 2-34 37-69 (94)
7 >1s58_A B19 parvovirus capsid; 10.0 67 0.002 15.9 -0.1 12 13-24 249-260 (306)
8 >1tu7_A Glutathione S-transfer 8.9 76 0.0023 15.6 -0.2 33 2-34 36-68 (77)
9 >3kq5_A Hypothetical cytosolic 8.6 1.3E+02 0.0039 14.5 0.9 18 8-25 27-44 (70)
10 >2vdf_A OPCA, outer membrane p 8.1 2.1E+02 0.0061 13.6 2.0 12 18-29 210-221 (253)
No 1
>>2g8g_A Capsid; adeno-associated virus serotype 4, gene therapy, icosahedral virus; HET: D5M; 3.20A {Adeno-associated virus - 4} (A:1-219,A:396-524)
Probab=17.91 E-value=56 Score=16.23 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=10.9
Q ss_pred CCCCCCEEEEEEEEC
Q ss_conf 116998589999822
Q gi|254781216|r 12 YIGTPPTIFIKFWNI 26 (38)
Q Consensus 12 yigtpptifikfwni 26 (38)
.---||+||||.--+
T Consensus 252 m~~PPp~IFiK~~p~ 266 (348)
T 2g8g_A 252 LKHPPPQIFIKNTPV 266 (348)
T ss_dssp ESSCSCEEEEEECCC
T ss_pred CCCCCCEEEEECCCC
T ss_conf 589998489855777
No 2
>>2qa0_A Capsid protein; beta-barrel, icosahedral virus; 2.60A {Adeno-associated virus - 8} PDB: 1lp3_A (A:1-219,A:391-519)
Probab=15.79 E-value=61 Score=16.08 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=11.3
Q ss_pred CCCCCEEEEEEEECCC
Q ss_conf 1699858999982244
Q gi|254781216|r 13 IGTPPTIFIKFWNIEE 28 (38)
Q Consensus 13 igtpptifikfwniee 28 (38)
---||+||||.--+--
T Consensus 253 ~~PPp~IFiK~~p~P~ 268 (348)
T 2qa0_A 253 KHPPPQILIKNTPVPA 268 (348)
T ss_dssp SSCSCCEEEEECCCBC
T ss_pred CCCCCEEEEECCCCCC
T ss_conf 8999717996567788
No 3
>>3ei4_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, alternative splicing, disease mutation, DNA repair; HET: DNA; 3.30A {Homo sapiens} (B:347-400)
Probab=14.88 E-value=52 Score=16.38 Aligned_cols=14 Identities=43% Similarity=0.759 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 97878565020116
Q gi|254781216|r 1 MGRPPETNFKGYIG 14 (38)
Q Consensus 1 mgrppetnfkgyig 14 (38)
.||-|..||+||.-
T Consensus 16 vGRYpd~~f~g~~~ 29 (54)
T 3ei4_B 16 VGRYPDPNFKSCTP 29 (54)
T ss_dssp EECCCCTTSCCSSS
T ss_pred EEECCCCCEEEEEC
T ss_conf 99766897179971
No 4
>>1bml_C Streptokinase; human plasmin; 2.90A {Streptococcus equisimilis} (C:1-140)
Probab=13.67 E-value=39 Score=16.99 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.1
Q ss_pred CCCCCEEEEEEEECCCCCEEECC
Q ss_conf 16998589999822443011003
Q gi|254781216|r 13 IGTPPTIFIKFWNIEESSAILHN 35 (38)
Q Consensus 13 igtpptifikfwnieessailhn 35 (38)
-||-..|||||..|.-.|.+.|.
T Consensus 16 egTnqei~ikf~eidl~s~~a~g 38 (140)
T 1bml_C 16 EGTNQDISLKFFEIDLTSRPAHG 38 (140)
T ss_dssp SSSCCEECCCCCEEECCCCC---
T ss_pred ECCCCEEEEEEEEEECCCCCCCC
T ss_conf 25784799999875034554446
No 5
>>3gfh_A Ethanolamine utilization protein EUTL; bacterial mircocompartment, shell protein, structural protein; 2.20A {Escherichia coli} PDB: 3i87_A 3i82_A (A:111-225)
Probab=12.87 E-value=70 Score=15.78 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q ss_conf 787856502011
Q gi|254781216|r 2 GRPPETNFKGYI 13 (38)
Q Consensus 2 grppetnfkgyi 13 (38)
|-|.||||-|-+
T Consensus 68 ~PPSeTNfgGal 79 (115)
T 3gfh_A 68 PPPSETNYSAAF 79 (115)
T ss_dssp CSCCTTSCEEEE
T ss_pred CCCCCCCEEEEE
T ss_conf 566888779999
No 6
>>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GTT; 1.90A {Necator americanus} (A:1-78,A:191-206)
Probab=10.15 E-value=70 Score=15.79 Aligned_cols=33 Identities=18% Similarity=0.051 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEC
Q ss_conf 787856502011699858999982244301100
Q gi|254781216|r 2 GRPPETNFKGYIGTPPTIFIKFWNIEESSAILH 34 (38)
Q Consensus 2 grppetnfkgyigtpptifikfwnieessailh 34 (38)
.++++-.-..--|+.|++...=.-+-||.+|+.
T Consensus 37 ~~~~~~~~~~p~g~vP~L~~~g~~l~ES~aIl~ 69 (94)
T 2on5_A 37 QEWPKHKDEMPFGQIPVLEEDGKQLAQSFAIAR 69 (94)
T ss_dssp TTGGGGGGGSTTSCSCEEEETTEEEESHHHHHH
T ss_pred HHHHHHHCCCCCCCCCEEEECCEEECCHHHHHH
T ss_conf 342676124888888745446621202469999
No 7
>>1s58_A B19 parvovirus capsid; icosahedral capsid, beta-barrel, icosahedral virus; 3.50A {Human parvovirus B19} (A:1-251,A:453-507)
Probab=9.97 E-value=67 Score=15.86 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=8.5
Q ss_pred CCCCCEEEEEEE
Q ss_conf 169985899998
Q gi|254781216|r 13 IGTPPTIFIKFW 24 (38)
Q Consensus 13 igtpptifikfw 24 (38)
.|-||.||||.-
T Consensus 249 l~~PP~if~k~~ 260 (306)
T 1s58_A 249 FYEPPQIFLKIL 260 (306)
T ss_dssp GGGSCCEECCBC
T ss_pred HHHCCCEEEECC
T ss_conf 578981798577
No 8
>>1tu7_A Glutathione S-transferase 2; HET: GTT; 1.50A {Onchocerca volvulus} (A:1-77)
Probab=8.88 E-value=76 Score=15.60 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEC
Q ss_conf 787856502011699858999982244301100
Q gi|254781216|r 2 GRPPETNFKGYIGTPPTIFIKFWNIEESSAILH 34 (38)
Q Consensus 2 grppetnfkgyigtpptifikfwnieessailh 34 (38)
.++++-.-..--|..|.+.+.=.-+-||.||++
T Consensus 36 ~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~ 68 (77)
T 1tu7_A 36 DDFSSIKSQFQFGQLPCLYDGDQQIVQSGAILR 68 (77)
T ss_dssp GGSTTTGGGSTTSCSCEEEETTEEEESHHHHHH
T ss_pred CCHHHHHHHHHCCCCCEEEECCCEEECHHHHHH
T ss_conf 338986010112888837731540223319999
No 9
>>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Coxiella burnetii} (A:1-22,A:117-164)
Probab=8.56 E-value=1.3e+02 Score=14.51 Aligned_cols=18 Identities=44% Similarity=0.604 Sum_probs=0.0
Q ss_pred CCCCCCCCCCEEEEEEEE
Q ss_conf 502011699858999982
Q gi|254781216|r 8 NFKGYIGTPPTIFIKFWN 25 (38)
Q Consensus 8 nfkgyigtpptifikfwn 25 (38)
|-|-+|.....-|||-||
T Consensus 27 nqkifitdeegnfikqwn 44 (70)
T 3kq5_A 27 NQKIFITDEEGNFIKQWN 44 (70)
T ss_dssp SEEEEEECTTCCEEEECC
T ss_pred EEEEEEECCCCCCCCCCC
T ss_conf 136887447887676548
No 10
>>2vdf_A OPCA, outer membrane protein; invasin, adhesin, beta barrel; 1.95A {Neisseria meningitidis} (A:)
Probab=8.10 E-value=2.1e+02 Score=13.56 Aligned_cols=12 Identities=33% Similarity=0.235 Sum_probs=0.0
Q ss_pred EEEEEEEECCCC
Q ss_conf 589999822443
Q gi|254781216|r 18 TIFIKFWNIEES 29 (38)
Q Consensus 18 tifikfwniees 29 (38)
+-|++.|+|..|
T Consensus 210 ~P~yr~w~I~~S 221 (253)
T 2vdf_A 210 GPFYKQRTYKES 221 (253)
T ss_dssp EEEEEEEEECCC
T ss_pred ECEEEEEEECCC
T ss_conf 020454454047
Done!