BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781216|ref|YP_003065629.1| hypothetical protein
CLIBASIA_05615 [Candidatus Liberibacter asiaticus str. psy62]
         (38 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781216|ref|YP_003065629.1| hypothetical protein CLIBASIA_05615 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 38

 Score = 80.5 bits (197), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/38 (100%), Positives = 38/38 (100%)

Query: 1  MGRPPETNFKGYIGTPPTIFIKFWNIEESSAILHNNAS 38
          MGRPPETNFKGYIGTPPTIFIKFWNIEESSAILHNNAS
Sbjct: 1  MGRPPETNFKGYIGTPPTIFIKFWNIEESSAILHNNAS 38


>gi|254780308|ref|YP_003064721.1| putative membrane-bound lytic murein transglycosylase signal
           peptide protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 288

 Score = 23.9 bits (50), Expect = 0.57,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 8   NFKGYIGTPPTIFIKFWNIE 27
           N K   G PP I +  W +E
Sbjct: 120 NLKKEYGVPPGILMALWGLE 139


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.136    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,375
Number of Sequences: 1233
Number of extensions: 538
Number of successful extensions: 2
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 38
length of database: 328,796
effective HSP length: 12
effective length of query: 26
effective length of database: 314,000
effective search space:  8164000
effective search space used:  8164000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)