HHsearch alignment for GI: 254781217 and conserved domain: pfam02796
>pfam02796 HTH_7 Helix-turn-helix domain of resolvase.
Probab=95.83 E-value=0.0091 Score=39.28 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=39.0
Q ss_pred CHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 124299999999999748957999972179997899999984
Q gi|254781217|r 3 AHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 3 ~~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
T Consensus 3 p~kl~~~~~~~v~~L~~~G~~i~~IA~~~~vsrsTvYRyl~~ 44 (45)
T pfam02796 3 PPKLNEEDINEVITLLEEGISIKQIAKIFGISRSTVYRYLAA 44 (45)
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCC
T ss_conf 510389999999999987994999999986008888764458