HHsearch alignment for GI: 254781217 and conserved domain: pfam02796

>pfam02796 HTH_7 Helix-turn-helix domain of resolvase.
Probab=95.83  E-value=0.0091  Score=39.28  Aligned_cols=42  Identities=19%  Similarity=0.391  Sum_probs=39.0

Q ss_pred             CHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             124299999999999748957999972179997899999984
Q gi|254781217|r    3 AHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ   44 (162)
Q Consensus         3 ~~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k   44 (162)
T Consensus         3 p~kl~~~~~~~v~~L~~~G~~i~~IA~~~~vsrsTvYRyl~~   44 (45)
T pfam02796         3 PPKLNEEDINEVITLLEEGISIKQIAKIFGISRSTVYRYLAA   44 (45)
T ss_pred             CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHCCC
T ss_conf             510389999999999987994999999986008888764458