HHsearch alignment of GI: 254781217 and MMDB domain: 1pdn_C_17-69

>1pdn_C (C:17-69) Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster}

Probab=95.26  E-value=0.023  Score=36.21  Aligned_cols=41  Identities=7%  Similarity=0.016  Sum_probs=38.2

Q ss_pred             CCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCH
Q ss_conf             29999999999974895799997217999789999998481
Q gi|254781217|r    6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDR   46 (162)
Q Consensus         6 yt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~   46 (162)
                      |+-++-+.|.+.+.+|.|.+.|++..+++.+|+++|+.+..
T Consensus         2 yS~DlR~riv~~~~~G~s~~~aA~~f~VS~~tv~k~~~r~~   42 (53)
T 1pdn_C            2 LPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQ   42 (53)
T ss_dssp             CCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             98999999999998699999999988968999999999987