Query gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 162
No_of_seqs 111 out of 119
Neff 5.2
Searched_HMMs 33803
Date Wed Jun 1 23:05:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781217.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3hef_A Gene 1 protein; bacter 99.9 9.4E-21 2.8E-25 157.3 12.0 111 4-120 14-125 (143)
2 >2elh_A CG11849-PA, LD40883P; 97.2 0.00032 9.6E-09 48.4 3.8 47 1-47 18-64 (87)
3 >1jko_C HIN recombinase, DNA-i 96.9 0.00051 1.5E-08 47.1 2.8 44 3-46 3-46 (52)
4 >2jn6_A Protein CGL2762, trans 96.5 0.0032 9.5E-08 41.8 4.1 45 1-45 1-47 (56)
5 >2rn7_A IS629 ORFA; helix, all 96.0 0.0078 2.3E-07 39.3 3.8 45 1-45 1-54 (108)
6 >1pdn_C Protein (PRD paired); 95.3 0.023 6.8E-07 36.2 4.1 41 6-46 2-42 (53)
7 >2cob_A LCOR protein; MLR2, KI 95.2 0.026 7.7E-07 35.9 4.2 42 3-44 11-53 (70)
8 >1hlv_A CENP-B, major centrome 94.9 0.055 1.6E-06 33.7 5.2 50 6-56 8-59 (67)
9 >2k27_A Paired box protein PAX 93.3 0.051 1.5E-06 33.9 2.4 43 4-46 24-66 (75)
10 >2r0q_C Putative transposon TN 91.9 0.15 4.3E-06 30.9 3.2 36 9-44 13-48 (59)
11 >2hku_A A putative transcripti 87.8 2.2 6.6E-05 23.1 7.4 61 10-74 28-88 (215)
12 >1s7o_A Hypothetical UPF0122 p 84.7 2.6 7.6E-05 22.7 5.5 52 3-54 20-71 (73)
13 >2rek_A Putative TETR-family t 83.2 3.7 0.00011 21.7 6.4 57 10-70 24-80 (82)
14 >2id6_A Transcriptional regula 80.9 4.4 0.00013 21.1 6.9 54 15-69 19-72 (77)
15 >1rp3_A RNA polymerase sigma f 79.7 4.6 0.00014 21.0 5.3 30 13-42 18-47 (150)
16 >1rkt_A Protein YFIR; transcri 79.7 4 0.00012 21.4 5.0 50 19-72 30-79 (82)
17 >3c3w_A Two component transcri 79.5 1.9 5.7E-05 23.5 3.3 34 11-44 6-39 (47)
18 >2yve_A Transcriptional regula 77.8 5.6 0.00016 20.5 5.3 52 20-75 23-74 (185)
19 >1x3u_A Transcriptional regula 77.4 2.8 8.3E-05 22.5 3.6 34 11-44 21-54 (79)
20 >1xsv_A Hypothetical UPF0122 p 77.0 5.8 0.00017 20.4 6.0 52 3-54 23-74 (76)
21 >2q24_A Putative TETR family t 76.8 5.9 0.00018 20.3 6.8 50 13-63 26-75 (194)
22 >2qwt_A Transcriptional regula 76.6 6 0.00018 20.3 7.3 58 12-73 23-80 (196)
23 >1mkm_A ICLR transcriptional r 76.5 5.1 0.00015 20.8 4.8 36 9-44 8-46 (64)
24 >1gdt_A GD resolvase, protein 76.2 2.9 8.7E-05 22.3 3.5 34 11-44 7-40 (42)
25 >1a04_A Nitrate/nitrite respon 74.2 3.3 9.8E-05 22.0 3.3 38 5-43 26-63 (87)
26 >2o8x_A Probable RNA polymeras 73.9 4.7 0.00014 21.0 4.0 53 3-55 13-65 (70)
27 >2fd5_A Transcriptional regula 73.9 3.7 0.00011 21.7 3.5 41 14-55 20-60 (75)
28 >2dg8_A Putative TETR-family t 73.6 7.1 0.00021 19.8 6.5 52 20-75 28-79 (193)
29 >1fse_A GERE; helix-turn-helix 73.5 3.3 9.9E-05 22.0 3.2 35 10-44 15-49 (74)
30 >2ia2_A Putative transcription 73.3 2.7 7.9E-05 22.6 2.7 36 9-44 21-59 (86)
31 >3jsj_A Putative TETR-family t 72.9 7.4 0.00022 19.7 5.5 60 10-73 17-76 (190)
32 >2fq4_A Transcriptional regula 72.8 7.3 0.00022 19.7 4.8 42 9-51 16-61 (73)
33 >3dpj_A Transcription regulato 72.4 7.6 0.00022 19.6 6.6 51 18-72 25-75 (79)
34 >1y0u_A Arsenical resistance o 70.7 4.3 0.00013 21.2 3.2 37 8-44 30-66 (96)
35 >1eto_A FIS, factor for invers 70.1 5.3 0.00016 20.6 3.6 32 14-45 18-50 (53)
36 >1je8_A Nitrate/nitrite respon 70.0 4.5 0.00013 21.1 3.2 34 11-44 26-59 (82)
37 >2qtq_A Transcriptional regula 69.9 8.6 0.00025 19.3 6.0 30 20-50 35-64 (81)
38 >1or7_A Sigma-24, RNA polymera 69.4 8.8 0.00026 19.2 5.2 50 4-53 23-72 (78)
39 >3geu_A Intercellular adhesion 69.1 8.9 0.00026 19.2 6.7 52 20-75 22-73 (189)
40 >2nx4_A Transcriptional regula 69.0 9 0.00027 19.1 6.6 56 14-73 22-78 (194)
41 >2i10_A Putative TETR transcri 68.3 9.3 0.00027 19.0 5.2 32 19-51 29-60 (68)
42 >1sgm_A Putative HTH-type tran 68.2 9.3 0.00028 19.0 5.2 42 14-56 18-61 (191)
43 >1ntc_A Protein (nitrogen regu 67.7 5 0.00015 20.8 3.1 33 13-45 55-88 (91)
44 >1x57_A Endothelial differenti 67.6 6.5 0.00019 20.1 3.6 44 1-44 5-49 (91)
45 >2q0o_A Probable transcription 67.3 5.9 0.00017 20.3 3.3 33 11-43 8-40 (64)
46 >2g7u_A Transcriptional regula 66.9 3.5 0.0001 21.8 2.1 35 10-44 15-52 (75)
47 >3c57_A Two component transcri 66.7 6.1 0.00018 20.2 3.3 34 11-44 32-65 (95)
48 >1t33_A Putative transcription 66.0 10 0.0003 18.8 9.1 40 11-51 21-60 (224)
49 >2b5a_A C.BCLI; helix-turn-hel 65.7 10 0.00031 18.7 4.5 66 3-68 4-73 (77)
50 >1yio_A Response regulatory pr 65.6 6.4 0.00019 20.1 3.2 34 11-44 4-37 (65)
51 >3clo_A Transcriptional regula 65.4 6.7 0.0002 20.0 3.3 33 11-43 4-36 (60)
52 >2zcx_A SCO7815, TETR-family t 65.1 11 0.00032 18.6 6.6 50 20-73 42-91 (231)
53 >3klo_A Transcriptional regula 65.0 8.2 0.00024 19.4 3.7 50 11-60 10-64 (71)
54 >1ojl_A Transcriptional regula 64.9 4.4 0.00013 21.2 2.3 32 13-44 19-51 (51)
55 >1g2h_A Transcriptional regula 64.7 6.5 0.00019 20.1 3.1 34 12-45 24-57 (61)
56 >1l3l_A Transcriptional activa 64.4 6.9 0.00021 19.9 3.2 34 11-44 5-38 (61)
57 >1p4w_A RCSB; solution structu 64.3 5.4 0.00016 20.6 2.7 35 10-44 38-72 (99)
58 >2zb9_A Putative transcription 63.5 9.1 0.00027 19.1 3.7 30 20-50 42-71 (85)
59 >2rnj_A Response regulator pro 63.5 4.8 0.00014 20.9 2.3 34 11-44 34-67 (91)
60 >2jj7_A Hemolysin II regulator 63.0 12 0.00035 18.4 4.2 31 19-50 25-55 (70)
61 >1umq_A Photosynthetic apparat 62.7 8.4 0.00025 19.3 3.4 34 12-45 44-78 (81)
62 >3iuv_A Uncharacterized TETR f 62.7 9.7 0.00029 18.9 3.7 61 9-73 14-78 (201)
63 >3cjd_A Transcriptional regula 62.4 12 0.00035 18.3 5.1 47 20-70 31-77 (198)
64 >2of7_A Putative TETR-family t 61.6 7.9 0.00023 19.5 3.1 31 14-44 61-91 (95)
65 >3b81_A Transcriptional regula 61.0 13 0.00037 18.1 5.4 49 20-72 30-78 (80)
66 >2kpj_A SOS-response transcrip 60.9 9.1 0.00027 19.1 3.3 62 1-62 1-64 (94)
67 >2ao9_A Phage protein; structu 60.1 8.1 0.00024 19.4 3.0 39 14-54 36-79 (90)
68 >2o0y_A Transcriptional regula 59.5 6.5 0.00019 20.1 2.4 35 10-44 24-61 (95)
69 >2jpc_A SSRB; DNA binding prot 59.3 8.7 0.00026 19.2 3.0 33 12-44 4-36 (61)
70 >3gzi_A Transcriptional regula 59.1 14 0.0004 17.9 7.9 62 9-74 21-86 (218)
71 >1vz0_A PARB, chromosome parti 59.0 13 0.00039 18.0 3.9 35 9-43 23-57 (59)
72 >3he0_A Transcriptional regula 59.0 14 0.0004 17.9 4.7 52 20-75 30-81 (196)
73 >3crj_A Transcription regulato 59.0 13 0.00039 18.0 3.9 56 13-72 25-81 (199)
74 >2hyj_A Putative TETR-family t 58.2 14 0.00042 17.8 5.2 51 20-74 31-81 (200)
75 >3bhq_A Transcriptional regula 58.1 14 0.00042 17.8 9.8 52 20-72 31-82 (211)
76 >3bru_A Regulatory protein, TE 57.8 9.5 0.00028 19.0 3.0 29 14-42 42-71 (72)
77 >3knw_A Putative transcription 57.8 14 0.00042 17.8 8.8 59 13-75 25-84 (212)
78 >2np5_A Transcriptional regula 57.7 14 0.00042 17.8 5.4 31 20-51 28-58 (203)
79 >3bni_A Putative TETR-family t 57.3 12 0.00034 18.4 3.4 29 14-42 55-84 (85)
80 >3e7l_A Transcriptional regula 57.1 13 0.0004 18.0 3.7 33 13-45 23-56 (63)
81 >3by6_A Predicted transcriptio 56.7 14 0.0004 18.0 3.6 37 7-43 13-57 (106)
82 >3f1b_A TETR-like transcriptio 56.3 15 0.00045 17.6 6.9 60 14-77 26-86 (203)
83 >3frq_A Repressor protein MPHR 56.1 15 0.00045 17.6 6.1 31 20-51 27-57 (195)
84 >2gen_A Probable transcription 55.8 15 0.00046 17.6 11.2 58 14-75 19-77 (197)
85 >2ef8_A C.ECOT38IS, putative t 55.8 15 0.00045 17.6 3.8 61 9-69 10-74 (84)
86 >1r1t_A Transcriptional repres 55.8 12 0.00035 18.4 3.2 33 12-44 5-38 (78)
87 >1zk8_A Transcriptional regula 55.8 15 0.00046 17.6 4.6 51 20-74 27-77 (183)
88 >1ui5_A A-factor receptor homo 55.7 15 0.00046 17.6 8.4 54 20-77 28-81 (215)
89 >3g7r_A Putative transcription 55.3 16 0.00046 17.5 7.3 61 10-74 40-104 (221)
90 >3kkd_A Transcriptional regula 55.3 16 0.00046 17.5 4.8 31 20-51 54-84 (237)
91 >1z4h_A TORI, TOR inhibition p 55.2 7.4 0.00022 19.7 2.1 23 23-45 12-34 (66)
92 >3fym_A Putative uncharacteriz 54.9 16 0.00047 17.5 3.8 63 10-72 4-76 (130)
93 >1jhf_A LEXA repressor; LEXA S 54.6 15 0.00045 17.6 3.6 38 7-44 8-49 (72)
94 >2d6y_A Putative TETR family r 54.6 16 0.00048 17.5 5.2 36 14-50 21-56 (74)
95 >2q1z_A RPOE, ECF SIGE; ECF si 54.5 6.6 0.0002 20.0 1.7 48 4-51 32-79 (82)
96 >2a6h_F RNA polymerase sigma f 54.4 16 0.00048 17.4 4.6 48 6-53 26-77 (88)
97 >2ezk_A Transposase; DNA-bindi 54.1 16 0.00048 17.4 4.5 35 10-44 38-76 (99)
98 >2fbq_A Probable transcription 54.1 16 0.00049 17.4 7.5 31 20-51 26-56 (235)
99 >2opt_A Actii protein; helical 54.0 16 0.00049 17.4 4.7 32 19-51 24-55 (67)
100 >1y9q_A Transcriptional regula 54.0 13 0.00037 18.2 3.1 55 3-57 5-61 (76)
101 >2qco_A CMER; transcriptional 52.6 15 0.00044 17.7 3.3 49 20-72 32-80 (210)
102 >3egq_A TETR family transcript 52.5 7 0.00021 19.8 1.6 43 10-53 9-55 (69)
103 >1v4r_A Transcriptional repres 52.5 14 0.00043 17.8 3.2 38 6-43 12-57 (102)
104 >2hxi_A Putative transcription 52.3 15 0.00045 17.6 3.3 41 9-50 33-77 (241)
105 >2o7t_A Transcriptional regula 51.3 16 0.00047 17.5 3.3 33 9-41 12-48 (50)
106 >2g3b_A Putative TETR-family t 51.2 18 0.00054 17.1 4.6 31 20-51 22-52 (208)
107 >2vxz_A Pyrsv_GP04; viral prot 51.1 16 0.00046 17.5 3.2 33 11-43 13-46 (165)
108 >3lsg_A Two-component response 51.1 18 0.00053 17.2 3.5 37 8-44 9-47 (58)
109 >3e7q_A Transcriptional regula 50.8 18 0.00055 17.1 6.0 49 20-72 33-81 (215)
110 >3dew_A Transcriptional regula 50.7 7.6 0.00022 19.6 1.6 35 16-51 23-57 (72)
111 >2qko_A Possible transcription 50.7 10 0.0003 18.8 2.2 31 20-51 47-77 (215)
112 >1utx_A CYLR2; DNA-binding pro 50.7 10 0.0003 18.8 2.2 44 17-60 10-54 (66)
113 >2g7g_A RHA04620, putative tra 50.3 18 0.00053 17.2 3.4 41 8-49 14-56 (213)
114 >1xwr_A Regulatory protein CII 49.4 15 0.00045 17.6 2.9 45 3-49 6-51 (62)
115 >1qbj_A Protein (double-strand 48.9 17 0.0005 17.3 3.1 40 3-42 4-48 (81)
116 >3cdl_A Transcriptional regula 48.9 14 0.00042 17.8 2.7 23 19-41 27-49 (51)
117 >3g5g_A Regulatory protein; tr 48.9 20 0.00058 16.9 4.5 63 8-70 27-93 (99)
118 >1neq_A DNA-binding protein NE 48.5 20 0.00059 16.8 3.8 32 13-44 13-45 (74)
119 >2zcm_A Biofilm operon icaabcd 48.4 20 0.00059 16.8 6.5 50 20-73 26-75 (192)
120 >1uly_A Hypothetical protein P 48.2 19 0.00057 16.9 3.3 37 8-44 10-47 (74)
121 >3bqz_B HTH-type transcription 48.2 20 0.0006 16.8 7.4 32 19-51 20-51 (71)
122 >2pbx_A Hemagglutinin/protease 47.9 20 0.0006 16.8 7.3 54 20-77 36-89 (203)
123 >2ras_A Transcriptional regula 47.7 16 0.00047 17.5 2.8 31 19-50 29-59 (66)
124 >2pz9_A Putative regulatory pr 47.4 21 0.00062 16.7 4.0 40 10-50 35-78 (226)
125 >2eby_A Putative HTH-type tran 47.3 21 0.00062 16.7 3.9 66 5-70 6-76 (96)
126 >2zj8_A DNA helicase, putative 47.0 21 0.00062 16.7 4.8 42 13-55 84-125 (156)
127 >2ibd_A Possible transcription 46.6 21 0.00063 16.7 11.6 60 13-76 25-85 (204)
128 >1y7y_A C.AHDI; helix-turn-hel 46.5 21 0.00063 16.6 3.8 38 8-45 12-50 (74)
129 >2gfn_A HTH-type transcription 46.4 21 0.00064 16.6 4.5 30 20-50 28-57 (209)
130 >2r1j_L Repressor protein C2; 45.9 14 0.0004 18.0 2.2 56 10-65 6-65 (68)
131 >2guh_A Putative TETR-family t 45.8 17 0.0005 17.3 2.7 43 10-53 44-90 (214)
132 >3f6v_A Possible transcription 45.6 22 0.00065 16.6 3.6 37 8-44 57-94 (131)
133 >2ppx_A AGR_C_3184P, uncharact 45.6 14 0.00041 17.9 2.2 28 16-43 38-65 (68)
134 >2v57_A TETR family transcript 45.4 22 0.00066 16.5 7.3 65 9-77 18-84 (190)
135 >2g7l_A TETR-family transcript 45.2 22 0.00065 16.6 3.2 29 20-49 38-66 (243)
136 >3b7h_A Prophage LP1 protein 1 45.1 17 0.00052 17.2 2.7 60 6-65 4-68 (78)
137 >3c07_A Putative TETR-family t 45.1 23 0.00067 16.5 5.7 59 10-72 46-108 (273)
138 >2qib_A TETR-family transcript 45.0 23 0.00067 16.5 3.6 30 20-50 32-61 (213)
139 >2rae_A Transcriptional regula 44.9 21 0.00062 16.7 3.1 26 20-45 36-61 (207)
140 >2di3_A Bacterial regulatory p 44.7 23 0.00067 16.5 3.6 37 7-43 6-50 (78)
141 >1tty_A Sigma-A, RNA polymeras 44.1 23 0.00069 16.4 4.3 46 4-49 17-66 (87)
142 >3bjb_A Probable transcription 43.4 16 0.00046 17.5 2.2 29 20-49 41-69 (207)
143 >3ccy_A Putative TETR-family t 43.3 24 0.00071 16.3 7.0 54 20-77 33-86 (203)
144 >1b0n_A Protein (SINR protein) 43.2 16 0.00047 17.5 2.2 49 17-65 10-62 (65)
145 >3g1l_A Transcriptional regula 42.8 24 0.00072 16.3 8.4 45 10-55 49-97 (256)
146 >2eh3_A Transcriptional regula 42.8 24 0.00072 16.3 6.2 50 19-72 20-69 (179)
147 >3eus_A DNA-binding protein; s 42.4 20 0.0006 16.8 2.7 29 17-45 23-51 (86)
148 >1e0g_A Membrane-bound lytic m 41.7 12 0.00034 18.4 1.4 25 18-42 7-31 (48)
149 >2hxo_A Putative TETR-family t 41.7 24 0.00072 16.3 3.0 30 20-50 35-64 (237)
150 >3eet_A Putative GNTR-family t 41.6 22 0.00065 16.6 2.7 38 6-43 30-75 (96)
151 >1j5y_A Transcriptional regula 41.2 26 0.00076 16.1 3.6 37 8-44 20-59 (79)
152 >1u8b_A ADA polyprotein; prote 40.5 26 0.00078 16.0 3.7 38 7-44 9-48 (65)
153 >3clc_A Regulatory protein; pr 40.3 27 0.00079 16.0 4.2 60 8-67 10-73 (82)
154 >3ljl_A Transcriptional regula 40.3 12 0.00036 18.3 1.3 25 20-44 33-57 (60)
155 >3frw_A Putative Trp repressor 40.2 24 0.0007 16.3 2.8 38 13-50 27-67 (84)
156 >3bs3_A Putative DNA-binding p 39.6 19 0.00057 16.9 2.2 30 16-45 18-47 (76)
157 >2gu1_A Zinc peptidase; alpha/ 39.5 21 0.00061 16.7 2.4 28 18-45 12-39 (95)
158 >1r1u_A CZRA, repressor protei 39.2 26 0.00076 16.1 2.8 38 7-44 24-62 (106)
159 >3f52_A CLP gene regulator (CL 39.1 28 0.00082 15.9 4.7 65 8-72 27-95 (117)
160 >2ofy_A Putative XRE-family tr 38.7 28 0.00083 15.9 3.8 50 13-62 19-70 (86)
161 >1qgp_A Protein (double strand 38.5 25 0.00075 16.2 2.7 39 4-42 9-52 (77)
162 >1b9m_A Protein (mode); DNA-bi 38.4 20 0.00058 16.9 2.1 32 13-44 26-57 (112)
163 >1pb6_A Hypothetical transcrip 38.3 28 0.00084 15.8 7.9 56 14-73 30-86 (212)
164 >1zug_A Phage 434 CRO protein; 38.3 16 0.00047 17.5 1.6 57 10-66 4-63 (71)
165 >2in3_A Hypothetical protein; 38.1 29 0.00085 15.8 3.0 44 17-60 44-89 (91)
166 >1adr_A P22 C2 repressor; tran 37.8 28 0.00082 15.9 2.8 52 9-60 5-58 (76)
167 >1t56_A EThr repressor; helix- 37.6 29 0.00086 15.8 9.6 50 20-73 43-92 (216)
168 >2wiu_B HTH-type transcription 37.6 25 0.00074 16.2 2.5 52 8-59 11-64 (88)
169 >3f6w_A XRE-family like protei 37.5 29 0.00086 15.8 2.8 49 19-67 25-76 (83)
170 >1r71_A Transcriptional repres 37.3 30 0.00088 15.7 3.8 35 9-43 40-74 (76)
171 >2fjr_A Repressor protein CI; 37.1 30 0.00088 15.7 3.7 56 10-65 7-66 (70)
172 >1lmb_3 Protein (lambda repres 37.0 14 0.0004 18.0 1.1 52 19-70 28-82 (92)
173 >3bqy_A Putative TETR family t 36.5 30 0.0009 15.6 3.1 36 14-50 14-50 (209)
174 >1zs4_A Regulatory protein CII 36.3 31 0.0009 15.6 4.6 43 5-49 9-52 (62)
175 >3eup_A Transcriptional regula 36.1 31 0.00091 15.6 4.8 52 19-74 29-80 (204)
176 >3gbg_A TCP pilus virulence re 35.8 31 0.00092 15.6 5.6 68 7-74 171-242 (276)
177 >2np3_A Putative TETR-family r 35.7 6.7 0.0002 20.0 -0.6 31 20-51 49-79 (212)
178 >3hyi_A Protein DUF199/WHIA; l 35.2 32 0.00094 15.5 5.6 48 4-52 38-86 (91)
179 >3kz3_A Repressor protein CI; 35.1 23 0.00068 16.4 2.0 60 8-67 11-74 (80)
180 >1hw1_A FADR, fatty acid metab 34.5 33 0.00097 15.4 3.4 39 5-43 7-53 (77)
181 >2iu5_A DHAS, hypothetical pro 33.8 26 0.00076 16.1 2.1 41 10-51 18-62 (195)
182 >3fiw_A Putative TETR-family t 33.8 33 0.00097 15.4 2.6 30 19-49 43-72 (88)
183 >3ivp_A Putative transposon-re 32.5 35 0.001 15.2 4.2 38 8-45 11-49 (73)
184 >2g7s_A Transcriptional regula 32.4 31 0.00091 15.6 2.3 23 19-41 26-48 (50)
185 >1u2w_A CADC repressor, cadmiu 32.3 35 0.001 15.2 2.6 32 12-43 18-51 (95)
186 >1bl0_A Protein (multiple anti 32.0 36 0.0011 15.2 3.3 46 8-53 9-60 (76)
187 >3f0c_A TETR-molecule A, trans 31.8 36 0.0011 15.2 9.3 51 20-74 30-80 (216)
188 >2vke_A Tetracycline repressor 31.5 36 0.0011 15.1 3.1 31 20-51 22-52 (67)
189 >3col_A Putative transcription 30.8 37 0.0011 15.0 5.8 30 20-50 29-58 (196)
190 >2a6c_A Helix-turn-helix motif 30.8 38 0.0011 15.0 3.4 37 8-44 17-54 (83)
191 >2kko_A Possible transcription 30.6 38 0.0011 15.0 3.2 33 12-44 28-61 (82)
192 >2djp_A Hypothetical protein S 30.5 23 0.00069 16.4 1.4 26 18-43 20-45 (77)
193 >2id3_A Putative transcription 30.2 38 0.0011 15.0 5.5 31 20-51 59-89 (225)
194 >2cfx_A HTH-type transcription 30.0 39 0.0011 15.0 4.1 36 9-44 5-42 (55)
195 >2oqg_A Possible transcription 29.1 40 0.0012 14.9 3.8 37 8-44 20-57 (79)
196 >1r69_A Repressor protein CI; 29.0 36 0.0011 15.2 2.2 55 12-66 4-61 (69)
197 >2w48_A Sorbitol operon regula 28.5 41 0.0012 14.8 2.7 37 9-45 8-45 (54)
198 >3lhq_A Acrab operon repressor 28.5 41 0.0012 14.8 10.8 31 20-51 33-63 (220)
199 >2oi8_A Putative regulatory pr 28.4 41 0.0012 14.8 3.5 23 19-41 34-56 (58)
200 >3cwr_A Transcriptional regula 28.3 41 0.0012 14.8 3.2 29 20-49 36-64 (208)
201 >3i53_A O-methyltransferase; C 28.1 42 0.0012 14.7 3.0 32 12-43 28-60 (90)
202 >3fmy_A HTH-type transcription 28.1 42 0.0012 14.7 2.7 60 6-65 8-70 (73)
203 >2jsc_A Transcriptional regula 28.0 31 0.00092 15.6 1.7 34 11-44 23-57 (118)
204 >1d5y_A ROB transcription fact 27.8 41 0.0012 14.8 2.3 56 9-64 7-63 (104)
205 >2o38_A Hypothetical protein; 27.6 42 0.0013 14.7 3.0 38 7-44 38-76 (120)
206 >3kzq_A Putative uncharacteriz 27.5 43 0.0013 14.7 2.5 45 9-55 27-78 (89)
207 >3c2b_A Transcriptional regula 27.4 43 0.0013 14.7 4.7 29 20-49 34-62 (221)
208 >2gtq_A Aminopeptidase N; alan 27.0 43 0.0013 14.6 8.7 104 4-107 43-152 (180)
209 >2k9s_A Arabinose operon regul 26.1 45 0.0013 14.5 3.3 37 8-44 9-47 (61)
210 >2k9s_A Arabinose operon regul 26.0 45 0.0013 14.5 3.5 37 8-44 6-43 (46)
211 >3gn5_A HTH-type transcription 25.8 46 0.0014 14.5 2.6 49 17-65 9-59 (62)
212 >2o3f_A Putative HTH-type tran 25.2 47 0.0014 14.4 3.3 37 8-44 24-62 (111)
213 >2dbb_A Putative HTH-type tran 24.9 47 0.0014 14.4 4.0 37 8-44 8-46 (58)
214 >3cuo_A Uncharacterized HTH-ty 24.9 48 0.0014 14.4 3.1 37 8-44 14-52 (90)
215 >3gp4_A Transcriptional regula 24.9 48 0.0014 14.4 2.2 24 22-45 3-26 (60)
216 >1y6u_A XIS, excisionase from 24.8 48 0.0014 14.4 2.7 24 22-45 17-40 (70)
217 >2ewt_A BLDD, putative DNA-bin 24.3 49 0.0014 14.3 2.9 53 6-58 5-61 (71)
218 >3dbw_A Transcriptional regula 24.1 49 0.0015 14.3 3.7 40 4-43 19-65 (226)
219 >2vpr_A Tetracycline resistanc 24.0 49 0.0015 14.3 2.9 31 20-51 23-53 (68)
220 >3iyd_F RNA polymerase sigma f 23.9 42 0.0012 14.7 1.7 41 4-44 46-90 (110)
221 >2v79_A DNA replication protei 23.8 50 0.0015 14.2 4.3 35 10-44 22-59 (120)
222 >1q06_A Transcriptional regula 23.4 49 0.0015 14.3 2.0 24 22-45 1-24 (74)
223 >2p5t_A Putative transcription 23.2 51 0.0015 14.2 2.6 45 17-61 10-55 (158)
224 >1ixc_A CBNR, LYSR-type regula 22.9 52 0.0015 14.1 2.1 32 13-44 7-38 (88)
225 >2h1n_A Oligoendopeptidase F; 22.8 52 0.0015 14.1 3.5 42 36-77 25-66 (91)
226 >1u78_A TC3 transposase, trans 22.7 52 0.0015 14.1 4.2 40 5-44 6-45 (53)
227 >2ezh_A Transposase; DNA-bindi 22.5 53 0.0016 14.1 2.4 43 5-47 7-61 (75)
228 >1bia_A BIRA bifunctional prot 21.9 54 0.0016 14.0 3.6 37 8-44 4-42 (64)
229 >1zk6_A Foldase protein PRSA; 21.9 50 0.0015 14.2 1.8 28 7-34 14-41 (93)
230 >3edp_A LIN2111 protein; APC88 21.8 54 0.0016 14.0 4.7 37 7-43 11-55 (76)
231 >2jrt_A Uncharacterized protei 21.7 55 0.0016 14.0 3.8 32 13-44 40-72 (95)
232 >2pn6_A ST1022, 150AA long hyp 21.4 55 0.0016 13.9 3.9 36 9-44 3-40 (53)
233 >3hh0_A Transcriptional regula 21.1 56 0.0017 13.9 2.2 25 21-45 4-28 (74)
234 >2uxu_A HTH-type transcription 21.1 56 0.0017 13.9 8.0 37 14-51 23-60 (210)
235 >3c7j_A Transcriptional regula 21.0 56 0.0017 13.9 4.1 38 6-43 27-71 (91)
236 >2hs5_A Putative transcription 21.0 56 0.0017 13.9 2.9 38 5-42 28-72 (94)
237 >2iai_A Putative transcription 20.9 57 0.0017 13.9 8.0 58 12-73 10-68 (200)
238 >3fzv_A Probable transcription 20.5 47 0.0014 14.4 1.4 32 13-44 10-41 (88)
239 >2w25_A Probable transcription 20.4 58 0.0017 13.8 4.0 36 9-44 7-44 (56)
240 >1kqf_A FDH-N, formate dehydro 20.2 59 0.0017 13.8 2.6 52 96-148 8-64 (111)
241 >2jml_A DNA binding domain/tra 20.2 59 0.0017 13.8 2.7 25 21-45 5-29 (81)
No 1
>>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} (A:)
Probab=99.85 E-value=9.4e-21 Score=157.32 Aligned_cols=111 Identities=23% Similarity=0.461 Sum_probs=103.2
Q ss_pred HHCCHHHHHHHHHHHHCCHHHHHHHHCCCCC-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 2429999999999974895799997217999-789999998481999999999999979999999998652026324204
Q gi|254781217|r 4 HKYTKERIDNILASFSGGLSLSQSCKKHGVT-VVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLTEEERD 82 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp-~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~~~~~~~~ 82 (162)
.|||+++++.||+.+++|.|++.||+..||| ++||++|+.++ ++|+++|.+||+.+.+.+++.++++++.. .+
T Consensus 14 sky~~e~~~~i~~~~~~G~s~~~Ia~~~gips~~Tl~~W~~~~-~ef~e~~~~ak~~~~~~v~~~l~~~A~~~-----~~ 87 (143)
T 3hef_A 14 SDYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKH-EDFRDKYAKATEARADSIFEEIFEIADNA-----IP 87 (143)
T ss_dssp CSCCHHHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CS
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CC
T ss_conf 7689999999999998798799998727999689999999817-89999999999999999999999999601-----13
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHCC
Q ss_conf 98999999999999999998756444011123344210
Q gi|254781217|r 83 HPQAIKLRELRMKRLQWELEKRYRNVYGNHVSVEQKHT 120 (162)
Q Consensus 83 ~~~~i~~~rl~id~~kW~asKl~Pk~YGdKv~vE~~~t 120 (162)
+...+...+..+++++|+|+++.|++||||++||+++.
T Consensus 88 ~~~~~~~~~~~~~A~~f~L~~~~p~~y~dk~~~e~tg~ 125 (143)
T 3hef_A 88 DAAEVAKARLRVDTRKWALARMNPRKYGDKVTNELVGK 125 (143)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSHHHHSCCEEEEEECG
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCC
T ss_conf 52788777788889999997268131365432003578
No 2
>>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} (A:)
Probab=97.21 E-value=0.00032 Score=48.40 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=42.7
Q ss_pred CCCHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHH
Q ss_conf 97124299999999999748957999972179997899999984819
Q gi|254781217|r 1 MYAHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRE 47 (162)
Q Consensus 1 m~~~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~e 47 (162)
|+-.+||+|+-..|..++-.|.|+..||++.|++.+|+|+|++++.+
T Consensus 18 ~~rr~yt~efK~~av~~~~~G~sv~eva~~~gIs~stl~~W~k~~~~ 64 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 88870899999999999872699999999979699999999999998
No 3
>>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} (C:)
Probab=96.95 E-value=0.00051 Score=47.08 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=40.7
Q ss_pred CHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCH
Q ss_conf 12429999999999974895799997217999789999998481
Q gi|254781217|r 3 AHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDR 46 (162)
Q Consensus 3 ~~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~ 46 (162)
-.++|++.++.+...++.|.|++.||+..||+..|+|+++....
T Consensus 3 p~klt~eq~~~a~~l~~~G~s~~~iA~~~gVSr~TiYr~l~~~~ 46 (52)
T 1jko_C 3 PRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp CCSSCTTHHHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf 98699999999999998799899999998979999999845214
No 4
>>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} (A:1-56)
Probab=96.48 E-value=0.0032 Score=41.83 Aligned_cols=45 Identities=24% Similarity=0.466 Sum_probs=41.1
Q ss_pred CCCHHCCHHHHHHHHHHHHC--CHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 97124299999999999748--9579999721799978999999848
Q gi|254781217|r 1 MYAHKYTKERIDNILASFSG--GLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 1 m~~~Kyt~el~d~Ic~~Ia~--G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
|.-.+|++|+=.+|.....+ |.|+..|+++.|++.+|+++|++..
T Consensus 1 M~rr~ys~EFK~~aV~l~~~~~g~sv~~vA~~~gi~~~tl~~Wvk~~ 47 (56)
T 2jn6_A 1 MPTKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (56)
T ss_dssp CCCCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 93598999999999999998389839999999699821303999997
No 5
>>2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri} (A:)
Probab=95.96 E-value=0.0078 Score=39.29 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=38.6
Q ss_pred CCCHH-CCHHHHHHHHHHHH--------CCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 97124-29999999999974--------89579999721799978999999848
Q gi|254781217|r 1 MYAHK-YTKERIDNILASFS--------GGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 1 m~~~K-yt~el~d~Ic~~Ia--------~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
|+.++ ||+++=..+....- .|.|++.||+..|++.+|+++|+...
T Consensus 1 M~k~r~ys~efK~~aV~l~~e~~~~~~~~g~sv~~vA~~lgis~~~l~~W~k~~ 54 (108)
T 2rn7_A 1 MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 989999999999999999998622346666539999753577989961599873
No 6
>>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} (C:17-69)
Probab=95.26 E-value=0.023 Score=36.21 Aligned_cols=41 Identities=7% Similarity=0.016 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCH
Q ss_conf 29999999999974895799997217999789999998481
Q gi|254781217|r 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDR 46 (162)
Q Consensus 6 yt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~ 46 (162)
|+-++-+.|.+.+.+|.|.+.|++..+++.+|+++|+.+..
T Consensus 2 yS~DlR~riv~~~~~G~s~~~aA~~f~VS~~tv~k~~~r~~ 42 (53)
T 1pdn_C 2 LPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQ 42 (53)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 98999999999998699999999988968999999999987
No 7
>>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=95.18 E-value=0.026 Score=35.86 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=37.5
Q ss_pred CHHCCHHHHHHHHHHHHCC-HHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 1242999999999997489-57999972179997899999984
Q gi|254781217|r 3 AHKYTKERIDNILASFSGG-LSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 3 ~~Kyt~el~d~Ic~~Ia~G-~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-.+||++....-++.|-+| .|++++++.+|+|++|++.|+..
T Consensus 11 ~~~yt~e~l~~Ai~aV~~g~mS~~~As~~y~IP~sTL~~ri~g 53 (70)
T 2cob_A 11 YRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE 53 (70)
T ss_dssp SCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCEEEHHCCCCCCCCCCHHHHHHHH
T ss_conf 2336888999999999835412220375305765011122776
No 8
>>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} (A:1-67)
Probab=94.89 E-value=0.055 Score=33.72 Aligned_cols=50 Identities=6% Similarity=0.089 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHCCH--HHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 29999999999974895--7999972179997899999984819999999999
Q gi|254781217|r 6 YTKERIDNILASFSGGL--SLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQA 56 (162)
Q Consensus 6 yt~el~d~Ic~~Ia~G~--SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~A 56 (162)
+|-+.=-.||.++-.|. |-++||+.+|+|.+|+..|+.. .+.+...+..+
T Consensus 8 ltl~eK~~ii~~~e~g~~~s~~~iAr~~gi~~STis~IlK~-k~~i~~~~~~~ 59 (67)
T 1hlv_A 8 LTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN-KRAILASERKY 59 (67)
T ss_dssp CCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 12787748999987397511006777508984889999960-48887665454
No 9
>>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} (A:1-75)
Probab=93.35 E-value=0.051 Score=33.94 Aligned_cols=43 Identities=7% Similarity=-0.021 Sum_probs=39.3
Q ss_pred HHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCH
Q ss_conf 2429999999999974895799997217999789999998481
Q gi|254781217|r 4 HKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDR 46 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~ 46 (162)
+-|+-++-.+|++....|.|.+.|++..+++.+|+.+|+.+..
T Consensus 24 RPlS~DLR~rIV~~~~~G~s~r~iArrf~VS~stv~kwl~R~r 66 (75)
T 2k27_A 24 RPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYY 66 (75)
T ss_dssp CSSCHHHHHHHHHHHHHTCCHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 3698999999999997599899999887765989999999986
No 10
>>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus} (C:151-209)
Probab=91.92 E-value=0.15 Score=30.90 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999999748957999972179997899999984
Q gi|254781217|r 9 ERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 9 el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-+.+.|.+.|..|.|+.+|++..|+++.|+|+=.++
T Consensus 13 ~iY~rVv~mL~~G~~is~IAk~~gisRqTVYRIK~d 48 (59)
T 2r0q_C 13 VIYHRVVEMLEEGQAISKIAKEVNITRQTVYRIKHD 48 (59)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999987799999999989699999999997
No 11
>>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} (A:)
Probab=87.78 E-value=2.2 Score=23.10 Aligned_cols=61 Identities=10% Similarity=0.203 Sum_probs=40.0
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999748957999972179997899999984819999999999999799999999986520
Q gi|254781217|r 10 RIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEA 74 (162)
Q Consensus 10 l~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~ 74 (162)
.+-.++..-+-|.|++.||+.-|++..|||+.... .+++ +..+.+...+.+.+.+.+..+.
T Consensus 28 aA~~l~~~~G~~~si~~IA~~agvs~~tiY~~F~s-Ke~L---~~~~~~~~~~~~~~~~~~~~~~ 88 (215)
T 2hku_A 28 AATELFLEHGEGVPITQICAAAGAHPNQVTYYYGS-KERL---FVEVACAAVLRAGKRAEDDAAT 88 (215)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHSS-HHHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCCC-HHHH---HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998586785999999865221411114353-9999---9999999999999998750377
No 12
>>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} (A:1-73)
Probab=84.72 E-value=2.6 Score=22.73 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=43.4
Q ss_pred CHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH
Q ss_conf 1242999999999997489579999721799978999999848199999999
Q gi|254781217|r 3 AHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE 54 (162)
Q Consensus 3 ~~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~ 54 (162)
...+++..-+-|.-+...|.|.+.|+...|++..|+.+++.+....++..+.
T Consensus 20 l~~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~~v~~~l~ra~~~Lr~~l~ 71 (73)
T 1s7o_A 20 AALLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (73)
T ss_dssp GGGSCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8439999999999999973129999999897999999999999999975899
No 13
>>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3} (A:1-82)
Probab=83.18 E-value=3.7 Score=21.67 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999974895799997217999789999998481999999999999979999999998
Q gi|254781217|r 10 RIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLAS 70 (162)
Q Consensus 10 l~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEile 70 (162)
.+-.++..-+-|-|++.||+.-|++..|||+... +.+++ +..+-....+.+.+.+-+
T Consensus 24 aa~~l~~~~G~~~t~~~ia~~agvs~~~~Y~~F~-~K~~L---~~~~~~~~~~~~~~~~~~ 80 (82)
T 2rek_A 24 AAAAEVARHGADASLEEIARRAGVGSATLHRHFP-SRWGL---LQAVFQERVAQLCDEARS 80 (82)
T ss_dssp HHHHHHHHHGGGCCHHHHHHHHTCCHHHHHHHCS-SHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHH
T ss_conf 9999999879788799999996949989998859-98999---999999999999999999
No 14
>>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} (A:1-77)
Probab=80.95 E-value=4.4 Score=21.14 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=34.1
Q ss_pred HHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997489579999721799978999999848199999999999997999999999
Q gi|254781217|r 15 LASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLA 69 (162)
Q Consensus 15 c~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEil 69 (162)
...=-.|.|++.||+.-|++..|||+.... .+++-.....-...+....+++++
T Consensus 19 ~~~G~~~~ti~~ia~~agvs~~~~Y~~F~s-ke~l~~~~~~~~~~~~~~~~~~~~ 72 (77)
T 2id6_A 19 GKKGYDRATTDEIAEKAGVAKGLIFHYFKN-KEELYYQAYXSVTEKLQKEFENFL 72 (77)
T ss_dssp HHHHHHHCCHHHHHHHHTCCTHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 872914067999999879099999511898-999999999999998899999987
No 15
>>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} (A:90-239)
Probab=79.69 E-value=4.6 Score=21.04 Aligned_cols=30 Identities=7% Similarity=0.112 Sum_probs=11.7
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999997489579999721799978999999
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWV 42 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl 42 (162)
.++..+..-.....+..........+..+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (150)
T 1rp3_A 18 KLKEKLGREPTDEEVAKELGISTEELFKTL 47 (150)
T ss_dssp HHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHCCCCCHHHHHHHH
T ss_conf 988863479999999541499899999998
No 16
>>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:1-82)
Probab=79.67 E-value=4 Score=21.44 Aligned_cols=50 Identities=6% Similarity=0.079 Sum_probs=34.0
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 489579999721799978999999848199999999999997999999999865
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
-.|.|++.||+.-||+..|||+... +.+++ +..+.....+.+.+.+.+..
T Consensus 30 ~~~~ti~~ia~~agvs~~t~Y~~F~-~k~~L---l~~~~~~~~~~~~~~l~~~~ 79 (82)
T 1rkt_A 30 FELTTXKDVVEESGFSRGGVYLYFS-STEEX---FRRIIETGLDEGLRKLDKSA 79 (82)
T ss_dssp STTCCHHHHHHHHTSCHHHHHTTCS-CHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCCCCHHCCCC-CHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 2408899999985899652101689-99999---99999999999999999875
No 17
>>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} (A:149-195)
Probab=79.45 E-value=1.9 Score=23.52 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
--+||..++.|.|...|+...+++..|+...+..
T Consensus 6 E~~vl~~l~~G~s~~eIA~~L~iS~~TV~~~~~~ 39 (47)
T 3c3w_A 6 ERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSR 39 (47)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999995799999999978878899999999
No 18
>>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum atcc 13032} PDB: 1v7b_A 2zoy_A 2yvh_A* 2dh0_A* 2zoz_A* (A:)
Probab=77.80 E-value=5.6 Score=20.51 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=34.6
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89579999721799978999999848199999999999997999999999865202
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAP 75 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~ 75 (162)
.|.|++.||+.-|++..|||++... .+++ +...-....+.+.+.+.+..+.+
T Consensus 23 ~~~ti~~Ia~~agvs~~tiY~~F~~-K~~L---l~~~~~~~~~~~~~~~~~~~~~~ 74 (185)
T 2yve_A 23 ETLSYDSLAEATGLSKSGLIYHFPS-RHAL---LLGMHELLADDWDKELRDITRDP 74 (185)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHCSS-HHHH---HHHHHHHHHHHHHHHHHHHCSST
T ss_pred CCCCHHHHHHHHCCCHHCCCCCCCC-HHHH---HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5178999999868374022587999-9999---99999999999999999987289
No 19
>>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} (A:)
Probab=77.40 E-value=2.8 Score=22.45 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=29.5
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
--+||..++.|.|...|+...+++..||...+..
T Consensus 21 E~~vl~~~~~G~s~~eIA~~L~is~~TV~~~~~~ 54 (79)
T 1x3u_A 21 ERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRAN 54 (79)
T ss_dssp HHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999993699999988989789999999999
No 20
>>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} (A:1-76)
Probab=77.01 E-value=5.8 Score=20.36 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=41.5
Q ss_pred CHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH
Q ss_conf 1242999999999997489579999721799978999999848199999999
Q gi|254781217|r 3 AHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE 54 (162)
Q Consensus 3 ~~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~ 54 (162)
..++++..-+-|.-+.-.|.|...|+...|+|..|+..++.+....++..+.
T Consensus 23 l~~L~~~~r~il~l~~~~g~s~~EIA~~l~is~~~v~~~~~ra~~~lr~~l~ 74 (76)
T 1xsv_A 23 QSLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (76)
T ss_dssp GGGSCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8668899999999999828659999999896999999999999999986999
No 21
>>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3} (A:)
Probab=76.79 E-value=5.9 Score=20.32 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=32.8
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 999997489579999721799978999999848199999999999997999
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEH 63 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ 63 (162)
.++..-+-.-|++.||+.-|++..|||+.... .+++-..+..........
T Consensus 26 ~l~~~~G~~~ti~~Ia~~agvs~~tiY~~F~s-K~~L~~~~~~~~~~~~~~ 75 (194)
T 2q24_A 26 RVFSEEGLDAHLERIAREAGVGSGTLYRNFPT-REALIEAAYRNEVARLCD 75 (194)
T ss_dssp HHHHHHCTTCCHHHHHHHTTCCHHHHHHHCCS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCCCHHHHHCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 99998695677999999838780119987798-899999999999999999
No 22
>>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1} (A:)
Probab=76.64 E-value=6 Score=20.30 Aligned_cols=58 Identities=9% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999974895799997217999789999998481999999999999979999999998652
Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162)
Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162)
-.++..-+-|-|++.||+.-|++..|||+.... .+++-. .......+.+.+.+....+
T Consensus 23 ~~l~~~~G~~~t~~~Ia~~agvs~~tiY~~F~s-Ke~L~~---~~~~~~~~~~~~~~~~~~~ 80 (196)
T 2qwt_A 23 YDTFAAEGLGVPMDEIARRAGVGAGTVYRHFPT-KQALVV---AVAEDRVRRIVDHARTLLA 80 (196)
T ss_dssp HHHHHHTCTTSCHHHHHHHTTSCHHHHHHHCSS-HHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC-HHHHHH---HHHHHHHHHHHHHHHHHHC
T ss_conf 999998796787999999959699999988089-999999---9999999999999988722
No 23
>>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:1-64)
Probab=76.55 E-value=5.1 Score=20.77 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=29.8
Q ss_pred HHHHHHHHHHH---CCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999974---8957999972179997899999984
Q gi|254781217|r 9 ERIDNILASFS---GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 9 el~d~Ic~~Ia---~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+-+-.|++.|+ .|.+++.||+..|+|.+|+|+-+..
T Consensus 8 ~r~l~iL~~l~~~~~~~t~~eia~~~glp~st~~Rll~t 46 (64)
T 1mkm_A 8 KKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVV 46 (64)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999972899989999999879199999999999
No 24
>>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} (A:142-183)
Probab=76.17 E-value=2.9 Score=22.32 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.++|..+-+.|.+-++|++..|++.++||+-|..
T Consensus 7 ~~~V~~L~~~G~g~t~IAk~LgI~R~sVYriL~~ 40 (42)
T 1gdt_A 7 RDAVLNMWQQGLGASHISKTMNIARSTVYKVINE 40 (42)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999987999999999989299999999970
No 25
>>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} (A:129-215)
Probab=74.16 E-value=3.3 Score=21.98 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=30.7
Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 429999999999974895799997217999789999998
Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
.+|+ .--+||..++.|.|...|+...|++..||...+.
T Consensus 26 ~Lt~-~E~~vl~l~~~G~s~~eIA~~L~iS~~TV~~~~~ 63 (87)
T 1a04_A 26 QLTP-RERDILKLIAQGLPNKMIARRLDITESTVKVHVK 63 (87)
T ss_dssp GSCH-HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHCCCCCCEEHHHHCCCHHHHHHHHH
T ss_conf 4898-9999999998499844018986875779999999
No 26
>>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} (A:)
Probab=73.94 E-value=4.7 Score=20.98 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=40.8
Q ss_pred CHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 12429999999999974895799997217999789999998481999999999
Q gi|254781217|r 3 AHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQ 55 (162)
Q Consensus 3 ~~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~ 55 (162)
...+++..-.-|.-..-.|.|...|+...|+|..|+..++.+....++..+..
T Consensus 13 l~~L~~~~r~i~~l~~~~~~s~~eIA~~l~is~~tV~~~l~ra~~~Lr~~l~~ 65 (70)
T 2o8x_A 13 IADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 65 (70)
T ss_dssp TTSSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC----
T ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98799999999899999584799999997989999999999999999998736
No 27
>>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} (A:1-75)
Probab=73.89 E-value=3.7 Score=21.67 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=29.2
Q ss_pred HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 999974895799997217999789999998481999999999
Q gi|254781217|r 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQ 55 (162)
Q Consensus 14 Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~ 55 (162)
|.+.=-.|.|++.||+.-|++..|||+... +.+++-..+..
T Consensus 20 ~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~-~K~~l~~~~~~ 60 (75)
T 2fd5_A 20 LLERGAVEPSVGEVMGAAGLTVGGFYAHFQ-SKDALMLEAFE 60 (75)
T ss_dssp HHHHTTTSCCHHHHHHHTTCCGGGGGGTCS-CHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHCCCCCHHHHHCC-CHHHHHHHHHH
T ss_conf 997194516899999873899426979819-89999999999
No 28
>>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3} (A:)
Probab=73.59 E-value=7.1 Score=19.79 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=35.1
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89579999721799978999999848199999999999997999999999865202
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAP 75 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~ 75 (162)
+|.|++.||+.-|++..|||+.... .+++ +..+-....+.+.+.+.+..+..
T Consensus 28 ~~~ti~~Ia~~agvs~~t~Y~~F~s-K~~L---~~~~~~~~~~~~~~~~~~~~~~~ 79 (193)
T 2dg8_A 28 ARVSHRRIAQRAGVPLGSMTYHFTG-IEQL---LREAFGRFTDHIVAVFDEHLGAA 79 (193)
T ss_dssp GGCCHHHHHHHHTSCTHHHHHHCSS-HHHH---HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHH---HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4067999999989099999766389-9999---99999999999999998873348
No 29
>>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} (A:)
Probab=73.47 E-value=3.3 Score=21.95 Aligned_cols=35 Identities=3% Similarity=0.052 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999748957999972179997899999984
Q gi|254781217|r 10 RIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 10 l~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.--+||..++.|.|...|+...+++..|+...+.+
T Consensus 15 rE~~vl~~~~~G~s~~eIA~~l~is~~TV~~~~~~ 49 (74)
T 1fse_A 15 REREVFELLVQDKTTKEIASELFISEKTVRNHISN 49 (74)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999992799999999968987799999999
No 30
>>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} (A:1-86)
Probab=73.30 E-value=2.7 Score=22.60 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHC---CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999999748---957999972179997899999984
Q gi|254781217|r 9 ERIDNILASFSG---GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 9 el~d~Ic~~Ia~---G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+.+-.|++.|+. |.+++.||+..|||.+|+|+-+..
T Consensus 21 ~r~l~IL~~l~~~~~~~tl~eia~~lg~~~st~~RlL~t 59 (86)
T 2ia2_A 21 ARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLT 59 (86)
T ss_dssp HHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999973799969999999979399999999999
No 31
>>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680} (A:)
Probab=72.93 E-value=7.4 Score=19.69 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=38.5
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999974895799997217999789999998481999999999999979999999998652
Q gi|254781217|r 10 RIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162)
Q Consensus 10 l~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162)
.+-+++.+-+-|.|++.||+.-|++..|||+.... .+++- ..+-+...+.+.+.+.+...
T Consensus 17 aA~~l~~~~G~~~t~~~IA~~agvs~~tiY~~F~s-Ke~L~---~a~~~~~~~~~~~~~~~~~~ 76 (190)
T 3jsj_A 17 AAAALTYRDGVGIGVEALCKAAGVSKRSXYQLFES-KDELL---AASLKERSAAFVAKALPPAD 76 (190)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTCCHHHHHHHCSC-HHHHH---HHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHCCCC-HHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998696785999999978982300121899-99999---99999999999999999875
No 32
>>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} (A:1-73)
Probab=72.81 E-value=7.3 Score=19.73 Aligned_cols=42 Identities=5% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 99999999974----89579999721799978999999848199999
Q gi|254781217|r 9 ERIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 9 el~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.+.+...+.+. .|.|++.||+.-|++..|||+... +.+++-.
T Consensus 16 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~-~ke~L~~ 61 (73)
T 2fq4_A 16 AILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWP-NKAAVVX 61 (73)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS-SHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCC-CHHHHHH
T ss_conf 999999999998492407799999996928877510379-9999999
No 33
>>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi} (A:1-79)
Probab=72.37 E-value=7.6 Score=19.61 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=34.8
Q ss_pred HHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7489579999721799978999999848199999999999997999999999865
Q gi|254781217|r 18 FSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 18 Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
=-+|.|++.||+.-|++..|||+... +.+++ +..+-+...+.+.+.+-+..
T Consensus 25 G~~~~ti~~Ia~~agvs~~t~Y~~F~-~ke~L---~~~~~~~~~~~~~~~~~~~~ 75 (79)
T 3dpj_A 25 GFAQTSFVDISAAVGISRGNFYYHFK-TKDEI---LAEVIRLRLARTAQXLADWQ 75 (79)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHCS-SHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 93517799999985859533778559-99999---99999999999999999987
No 34
>>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=70.69 E-value=4.3 Score=21.24 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999999748957999972179997899999984
Q gi|254781217|r 8 KERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
...--.|+..|++|.+...|+...|+|.+|+.+.++.
T Consensus 30 ~p~R~~Il~~L~~~~~~~eLa~~~~i~~stvs~HL~~ 66 (96)
T 1y0u_A 30 NPVRRKILRXLDKGRSEEEIXQTLSLSKKQLDYHLKV 66 (96)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999998445417889999989398899999999
No 35
>>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} (A:46-98)
Probab=70.06 E-value=5.3 Score=20.62 Aligned_cols=32 Identities=6% Similarity=-0.037 Sum_probs=27.1
Q ss_pred HHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 999974-89579999721799978999999848
Q gi|254781217|r 14 ILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 14 Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
|...|. .|-..+.+++..|+|..|||+++++.
T Consensus 18 I~~aL~~~~gn~s~aA~~Lgisr~tL~rklkk~ 50 (53)
T 1eto_A 18 LDMVMQYTLGNQTRAALMMGINRGTLRKKLKKY 50 (53)
T ss_dssp HHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999929989999999798999999999985
No 36
>>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} (A:)
Probab=69.98 E-value=4.5 Score=21.12 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
--+||..++.|.|...|+...|++..|+...+.+
T Consensus 26 E~~Vl~ll~~G~s~~~IA~~L~iS~~TV~~~~~~ 59 (82)
T 1je8_A 26 ERDILKLIAQGLPNKXIARRLDITESTVKVHVKH 59 (82)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999992899999976848889999999999
No 37
>>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A* (A:1-81)
Probab=69.87 E-value=8.6 Score=19.25 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.0
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 8957999972179997899999984819999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
.|.|++.||+.-|++..|||+.... .+++-
T Consensus 35 ~~~t~~~Ia~~agvs~~~iY~~F~s-k~~L~ 64 (81)
T 2qtq_A 35 VDISLSELSLRSGLNSALVKYYFGN-KAGLL 64 (81)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHSS-HHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH
T ss_conf 6378999999979098899777565-99999
No 38
>>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} (A:117-194)
Probab=69.42 E-value=8.8 Score=19.19 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHH
Q ss_conf 24299999999999748957999972179997899999984819999999
Q gi|254781217|r 4 HKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRY 53 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y 53 (162)
.++++..-.-|.-..-.|.|...|+...|+|..|+..++.+....++..+
T Consensus 23 ~~L~~~~r~i~~l~~~~~~s~~eIA~~lgis~~tv~~~l~ra~~~Lr~~l 72 (78)
T 1or7_A 23 ESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 72 (78)
T ss_dssp HHSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 70999999999999980979999999989499999999999999999999
No 39
>>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus} (A:)
Probab=69.15 E-value=8.9 Score=19.15 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=34.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89579999721799978999999848199999999999997999999999865202
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAP 75 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~ 75 (162)
.|.|++.||+.-|++..|||+.... .+++ +...-....+.+.+.+....+..
T Consensus 22 ~~~ti~~Ia~~agvs~~t~Y~~F~s-K~~L---~~~~~~~~~~~~~~~~~~~~~~~ 73 (189)
T 3geu_A 22 DGTTLDDIAKSVNIKKASLYYHFDS-KKSI---YEQSVKCCFDYLNNIIXXNQNKS 73 (189)
T ss_dssp HHCCHHHHHHHTTCCHHHHTTTCSS-HHHH---HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHH---HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6376999999879097688777799-9999---99999999999999999876068
No 40
>>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP} (A:)
Probab=68.97 E-value=9 Score=19.13 Aligned_cols=56 Identities=9% Similarity=0.196 Sum_probs=35.5
Q ss_pred HHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999974-895799997217999789999998481999999999999979999999998652
Q gi|254781217|r 14 ILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162)
Q Consensus 14 Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162)
++..-+ .|.|++.||+.-|++..|||+.... .+++ +..+.+...+.+.+.+..+..
T Consensus 22 l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~s-K~~L---~~~~~~~~~~~~~~~~~~~~~ 78 (194)
T 2nx4_A 22 LIAARGIEAANMRDIATEAGYTNGALSHYFAG-KDEI---LRTSYEHISEATDRRIAEALG 78 (194)
T ss_dssp HHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS-HHHH---HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCC-HHHH---HHHHHHHHHHHHHHHHHHHHC
T ss_conf 99975925065999999979099888530799-9999---999999879999999988623
No 41
>>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} (A:1-68)
Probab=68.34 E-value=9.3 Score=19.05 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=26.1
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 489579999721799978999999848199999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
-.+.|++.||+.-||+..+||++... .+++-.
T Consensus 29 ~~~~ti~~Ia~~~gvs~~~~Y~~F~s-K~~L~~ 60 (68)
T 2i10_A 29 YEGTSITDLTKALGINPPSLYAAFGS-KRDLFE 60 (68)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHCS-HHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHH
T ss_conf 15188999999858785568861599-999999
No 42
>>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} (A:)
Probab=68.23 E-value=9.3 Score=19.03 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=29.1
Q ss_pred HHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHCHHH-HHHHHHHH
Q ss_conf 999974-89579999721799978999999848199-99999999
Q gi|254781217|r 14 ILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQDRED-LEKRYEQA 56 (162)
Q Consensus 14 Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd~ee-f~e~Y~~A 56 (162)
++..-+ .|.|++.||+.-|++..|||+..... ++ +.+...+.
T Consensus 18 l~~~~G~~~~si~~Ia~~agvs~~tiY~yF~sK-~~ll~~~~~~~ 61 (191)
T 1sgm_A 18 LSQLQGYHATGLNQIVKESGAPKGSLYHFFPNG-KEELAIEAVTY 61 (191)
T ss_dssp HHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTC-HHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCC-HHHHHHHHHHH
T ss_conf 999839030669999998790988998885990-88899999999
No 43
>>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} (A:)
Probab=67.71 E-value=5 Score=20.79 Aligned_cols=33 Identities=6% Similarity=0.017 Sum_probs=27.3
Q ss_pred HHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 999997-489579999721799978999999848
Q gi|254781217|r 13 NILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 13 ~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
.|...+ ..+.+.+++++..||++.|+|+++++.
T Consensus 55 ~i~~~L~~~~gn~~~aA~~LGisR~TL~rklkk~ 88 (91)
T 1ntc_A 55 LLTTALRHTQGHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp HHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999949949999999798999999999987
No 44
>>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=67.58 E-value=6.5 Score=20.08 Aligned_cols=44 Identities=16% Similarity=0.021 Sum_probs=37.6
Q ss_pred CCCHHCCHHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 971242999999999997-48957999972179997899999984
Q gi|254781217|r 1 MYAHKYTKERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 1 m~~~Kyt~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
|.+.+++..+...|-... ..|.|...+|...|++..|+.+|.+-
T Consensus 5 ~~~~~~~~~ig~~ik~~R~~~~ltq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 5 SSGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 883217799999999999981886999999809999999999769
No 45
>>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP} (A:173-236)
Probab=67.31 E-value=5.9 Score=20.35 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999974895799997217999789999998
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
--+|+..++.|.+-..|+...|++..|+...+.
T Consensus 8 E~~vl~l~~~G~~~~eIA~~l~iS~~tV~~~~~ 40 (64)
T 2q0o_A 8 EMLCLVWASKGKTASVTANLTGINARTVQHYLD 40 (64)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999987599999999995999999999999
No 46
>>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} (A:1-75)
Probab=66.88 E-value=3.5 Score=21.84 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=28.4
Q ss_pred HHHHHHHHHHC---CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999748---957999972179997899999984
Q gi|254781217|r 10 RIDNILASFSG---GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 10 l~d~Ic~~Ia~---G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-+=.|++.|+. |.+++.|++..|+|.+|+|+-+..
T Consensus 15 r~l~iL~~l~~~~~~~t~~eia~~~glp~stv~Rll~t 52 (75)
T 2g7u_A 15 RGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLT 52 (75)
T ss_dssp HHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999973799989999999979199999999999
No 47
>>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A (A:)
Probab=66.66 E-value=6.1 Score=20.24 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
--+|+..++.|.|...|+...+++..||...+..
T Consensus 32 E~~vl~ll~~G~s~~eIA~~L~iS~~TV~~~~~~ 65 (95)
T 3c57_A 32 ERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSR 65 (95)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999991798799848856688899999999
No 48
>>1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} (A:)
Probab=66.05 E-value=10 Score=18.75 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 99999997489579999721799978999999848199999
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
+-.++..-+-..|++.||+.-|++..|||+.... .+++-.
T Consensus 21 A~~lf~~~G~~~T~~~IA~~aGvs~~tiY~~F~s-K~~L~~ 60 (224)
T 1t33_A 21 ALAQFGEYGLHATTRDIAALAGQNIAAITYYFGS-KEDLYL 60 (224)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHTSCHHHHHHHHSS-HHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHH
T ss_conf 9999998790756999999838992421578899-999999
No 49
>>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} (A:)
Probab=65.72 E-value=10 Score=18.71 Aligned_cols=66 Identities=6% Similarity=-0.072 Sum_probs=45.8
Q ss_pred CHHCCHHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH--CH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1242999999999997-48957999972179997899999984--81-9999999999999799999999
Q gi|254781217|r 3 AHKYTKERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ--DR-EDLEKRYEQAKQSHMEHLSENL 68 (162)
Q Consensus 3 ~~Kyt~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k--d~-eef~e~Y~~Ar~~~ad~ladEi 68 (162)
-......++..|.... ..|.|...+|+..|++.+++.+|.+- .+ -+.-.+++++...-.+.++++.
T Consensus 4 ~~~~~~~i~~~l~~~r~~~gltq~~la~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~~ 73 (77)
T 2b5a_A 4 EIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKM 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 4899999999999999980999999998969799999999859999999999999999798899984523
No 50
>>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} (A:144-208)
Probab=65.56 E-value=6.4 Score=20.10 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
--+||..++.|.|...|+...+++..|+...+.+
T Consensus 4 E~~vl~l~~~G~t~~eIA~~l~iS~~TV~~~~~~ 37 (65)
T 1yio_A 4 EQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHN 37 (65)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999981662999999818868999999999
No 51
>>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482} (A:199-258)
Probab=65.43 E-value=6.7 Score=19.99 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=29.0
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999974895799997217999789999998
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
--+|+..++.|.+-..|+...+++..|+...+.
T Consensus 4 E~~vl~~~~~G~t~~eIA~~l~is~~TV~~~~~ 36 (60)
T 3clo_A 4 EKEILRCIRKGLSSKEIAATLYISVNTVNRHRQ 36 (60)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999998599999999995999999999999
No 52
>>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor} (A:)
Probab=65.14 E-value=11 Score=18.64 Aligned_cols=50 Identities=12% Similarity=0.259 Sum_probs=33.8
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 895799997217999789999998481999999999999979999999998652
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162)
.|.|++.||+.-|++..|||+.... .+++ +..+-+...+.+.+.+.+...
T Consensus 42 ~~~si~~IA~~agvs~~t~Y~~F~s-K~~L---~~a~~~~~~~~~~~~~~~~~~ 91 (231)
T 2zcx_A 42 REITLTDIAATVGMHKSALLRYFET-REQI---FLKITAEGWKEWSAELCARLR 91 (231)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSS-HHHH---HHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 4077999999969598999788799-9999---999999999999999999874
No 53
>>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* (A:155-225)
Probab=64.97 E-value=8.2 Score=19.40 Aligned_cols=50 Identities=14% Similarity=0.072 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH-----CHHHHHHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984-----8199999999999997
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ-----DREDLEKRYEQAKQSH 60 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k-----d~eef~e~Y~~Ar~~~ 60 (162)
--.|+..++.|.|...|+...+++..|+...+.. +.....+-+..|++.+
T Consensus 10 E~~vl~~~~~G~s~~eIA~~l~is~~TV~~~~~~i~~Kl~~~~~~el~~~a~~~g 64 (71)
T 3klo_A 10 EQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWAKNNI 64 (71)
T ss_dssp HHHHHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 9999999974997999999979899999999999999858999999999999917
No 54
>>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} (A:254-304)
Probab=64.95 E-value=4.4 Score=21.15 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=27.1
Q ss_pred HHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999997-48957999972179997899999984
Q gi|254781217|r 13 NILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 13 ~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-|...| .+|-..+.+++..|||.+|+|+.+.+
T Consensus 19 ~I~~aL~~~~Gn~~~aA~~LGisr~TL~rklkk 51 (51)
T 1ojl_A 19 VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 51 (51)
T ss_dssp HHHHHHHTTTTCHHHHHHHHTSCHHHHHHHTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 999999992998999999988899999998675
No 55
>>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} (A:)
Probab=64.69 E-value=6.5 Score=20.08 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=29.7
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 9999997489579999721799978999999848
Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
+-|...|..--+.+.+++..||+..|+|+.+++.
T Consensus 24 ~~I~~aL~~~gn~~~aA~~Lgisr~tL~rklkk~ 57 (61)
T 1g2h_A 24 QVLKLFYAEYPSTRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp HHHHHHHHHSCSHHHHHHHTTSCTHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999984038738999999586189999899984
No 56
>>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} (A:174-234)
Probab=64.39 E-value=6.9 Score=19.87 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
--+|+..++.|.|-..|+...+++..|+...+..
T Consensus 5 E~~vl~l~~~G~s~~eIA~~L~is~~TV~~~~~~ 38 (61)
T 1l3l_A 5 EATYLRWIAVGKTXEEIADVEGVKYNSVRVKLRE 38 (61)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999975999999999969899999999999
No 57
>>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} (A:)
Probab=64.33 E-value=5.4 Score=20.59 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999748957999972179997899999984
Q gi|254781217|r 10 RIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 10 l~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.--+|+..|+.|.|.+.|....|++..|+...+..
T Consensus 38 rE~evl~ll~~G~t~~eIA~~L~iS~~TV~~~~~~ 72 (99)
T 1p4w_A 38 KESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999992899999998979699999999999
No 58
>>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor} (A:1-85)
Probab=63.49 E-value=9.1 Score=19.10 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=24.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 8957999972179997899999984819999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
.|-|++.||+.-|++..|||+.... .+++-
T Consensus 42 ~~~ti~~Ia~~agvs~~t~Y~~F~~-K~~L~ 71 (85)
T 2zb9_A 42 AQLTFERVARVSGVSKTTLYKWWPS-KGALA 71 (85)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSS-HHHHH
T ss_pred CCCCHHHHHHHHCCCCCCHHHHHCC-HHHHH
T ss_conf 4068999999856364841272098-99999
No 59
>>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} (A:)
Probab=63.47 E-value=4.8 Score=20.94 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
--+||..++.|.+-..|+...+++..|+...+.+
T Consensus 34 E~~vl~~l~~G~t~~eIA~~L~is~~TV~~~~~~ 67 (91)
T 2rnj_A 34 EMEILLLIAKGYSNQEIASASHITIKTVKTHVSN 67 (91)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999993899999998979799899999999
No 60
>>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2jk3_A 2fx0_A (A:1-70)
Probab=62.97 E-value=12 Score=18.38 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=25.2
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 48957999972179997899999984819999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
-.+.|++.||+.-|+++.|||+... +.+++-
T Consensus 25 ~~~~ti~~Ia~~agis~~~~Y~~F~-~Ke~L~ 55 (70)
T 2jj7_A 25 YEGTSIQEIAKEAKVNVAMASYYFN-GKENLY 55 (70)
T ss_dssp HHHCCHHHHHHHHTSCHHHHHHHHS-SHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHCCCCC-CHHHHH
T ss_conf 1407799999881988400104799-999999
No 61
>>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} (A:)
Probab=62.67 E-value=8.4 Score=19.33 Aligned_cols=34 Identities=6% Similarity=0.192 Sum_probs=28.2
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 99999974-89579999721799978999999848
Q gi|254781217|r 12 DNILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 12 d~Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
+-|...|. .|-..+++++..|++..|+|+.+++.
T Consensus 44 ~~I~~aL~~~~gn~~~aA~~Lgisr~TL~rklkk~ 78 (81)
T 1umq_A 44 EHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 99999999998309999999698999999999972
No 62
>>3iuv_A Uncharacterized TETR family protein; APC6223, structural genomics, PSI-2, protein structure initiative; 2.55A {Streptomyces coelicolor A3} (A:)
Probab=62.67 E-value=9.7 Score=18.90 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=36.9
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999974----895799997217999789999998481999999999999979999999998652
Q gi|254781217|r 9 ERIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162)
Q Consensus 9 el~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162)
.+.+.-.+.+. .|.|++.||+.-|++..|||+.... .+++- ...-+...+.+.+.+....+
T Consensus 14 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s-K~~L~---~~~~~~~~~~~~~~~~~~~~ 78 (201)
T 3iuv_A 14 RIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFAT-LDDLX---VAALRQANEGFARVVAAHPA 78 (201)
T ss_dssp HHHHHHHHHHHTTCGGGCCHHHHHHHHTCCHHHHHHHCSS-HHHHH---HHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999984903067999999978586179888389-99999---99999999999999997651
No 63
>>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP} (A:)
Probab=62.41 E-value=12 Score=18.32 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=30.6
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 895799997217999789999998481999999999999979999999998
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLAS 70 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEile 70 (162)
.|.|++.||+.-|++..|||+.... .+++-.. ......+.+.+.+.+
T Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~s-K~~L~~~---~~~~~~~~~~~~~~~ 77 (198)
T 3cjd_A 31 ASLRARELARQADCAVGAIYTHFQD-LNALTLE---VNGRTFARLGAAVGA 77 (198)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSS-HHHHHHH---HHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 5257999999978754589998498-7889999---999999999999999
No 64
>>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor} (A:1-95)
Probab=61.61 E-value=7.9 Score=19.50 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=25.0
Q ss_pred HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999748957999972179997899999984
Q gi|254781217|r 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 14 Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+++.=-.|.|++.||+.-||+..+||+++..
T Consensus 61 ~~~~G~~~~ti~~Ia~~agvs~~slY~~F~s 91 (95)
T 2of7_A 61 IRQQGYEATTVEQIAERAEVSPSTVLRYFPT 91 (95)
T ss_dssp HHHHCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 9980955278999999979399899998698
No 65
>>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} (A:1-80)
Probab=60.95 E-value=13 Score=18.15 Aligned_cols=49 Identities=12% Similarity=0.194 Sum_probs=33.5
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89579999721799978999999848199999999999997999999999865
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
.+-|++.||+..|++..|||+.... .+++ +...-....+.+.+.+.++.
T Consensus 30 ~~~t~~~Ia~~~gvs~~~~Y~~F~~-K~~L---~~~~~~~~~~~~~~~~~~~~ 78 (80)
T 3b81_A 30 ENTTLAFIINKLGISKGALYHYFSS-KEEC---ADAAIENRVAFFSNEVLKES 78 (80)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCSS-HHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 4078999999959898899871699-9999---99999999999999999987
No 66
>>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} (A:)
Probab=60.88 E-value=9.1 Score=19.10 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=41.6
Q ss_pred CCCHHCCHHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHHHHHHHHHHHHHH
Q ss_conf 971242999999999997-4895799997217999789999998481-9999999999999799
Q gi|254781217|r 1 MYAHKYTKERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLEKRYEQAKQSHME 62 (162)
Q Consensus 1 m~~~Kyt~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~e~Y~~Ar~~~ad 62 (162)
|...+....+.+.|=... ..|.|...++...|++.+|+.+|.+-.. .....-..-|+..+++
T Consensus 1 M~~~~~~~~ig~~lk~~r~~~g~sq~~lA~~~gis~~tis~~e~G~~~p~~~~l~~ia~~l~v~ 64 (94)
T 2kpj_A 1 MVKDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNIN 64 (94)
T ss_dssp CCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 9663899999999999999909999999998853005678876010004789999999998958
No 67
>>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} (A:1-90)
Probab=60.10 E-value=8.1 Score=19.42 Aligned_cols=39 Identities=8% Similarity=0.320 Sum_probs=28.9
Q ss_pred HHHHHHCC-----HHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH
Q ss_conf 99997489-----579999721799978999999848199999999
Q gi|254781217|r 14 ILASFSGG-----LSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE 54 (162)
Q Consensus 14 Ic~~Ia~G-----~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~ 54 (162)
+.+.|+.| ++...++...||.++|+|+|..+| +.|-+ |.
T Consensus 36 v~NEl~~~~neeKkTqeelA~ElGi~R~~L~~WrTqn-~~Fi~-y~ 79 (90)
T 2ao9_A 36 VENELMESNNEEKRTQDEMANELGINRTTLWEWRTKN-QDFIA-FK 79 (90)
T ss_dssp HHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHC-HHHHH-HH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCC-HHHHH-HH
T ss_conf 9887603675667579999999574699999886044-66999-99
No 68
>>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:1-95)
Probab=59.48 E-value=6.5 Score=20.07 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=28.5
Q ss_pred HHHHHHHHHH---CCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999974---8957999972179997899999984
Q gi|254781217|r 10 RIDNILASFS---GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 10 l~d~Ic~~Ia---~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.+=.|++.|+ .|.+++.||+..|+|.+|+|+-+..
T Consensus 24 r~l~iL~~l~~~~~~~~~~eia~~lgl~~st~~RlL~t 61 (95)
T 2o0y_A 24 RVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVAT 61 (95)
T ss_dssp HHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999974799989999999979298999999999
No 69
>>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} (A:)
Probab=59.29 E-value=8.7 Score=19.21 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=28.8
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999748957999972179997899999984
Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-+|+..++.|.|...|+...+++..|+...+..
T Consensus 4 ~evl~~~~~G~s~~eIA~~l~iS~~TV~~~~~~ 36 (61)
T 2jpc_A 4 RQVLKLIDEGYTNHGISEKLHISIKTVETHRMN 36 (61)
T ss_dssp HHHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999982799999998969889999999999
No 70
>>3gzi_A Transcriptional regulator, TETR family; YP_001095692.1, TETR family transcriptional regulator, structural genomics; 2.05A {Shewanella loihica pv-4} (A:)
Probab=59.08 E-value=14 Score=17.94 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=39.6
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999974----8957999972179997899999984819999999999999799999999986520
Q gi|254781217|r 9 ERIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEA 74 (162)
Q Consensus 9 el~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~ 74 (162)
.+.+.-.+.++ .|.|++.||+.-|++..|||+.... .+++ +..+-....+.+.+.+.+..+.
T Consensus 21 ~Il~aA~~l~~~~G~~~~si~~IA~~aGvs~~tlY~yF~s-Ke~L---~~~~~~~~~~~~~~~~~~~~~~ 86 (218)
T 3gzi_A 21 KLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGS-KEKL---FSTXIHETAXPVLAQLHKARRE 86 (218)
T ss_dssp HHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSS-HHHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCCC-HHHH---HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999983923057999999868896404415999-9999---9988999999999999998736
No 71
>>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:100-158)
Probab=59.04 E-value=13 Score=18.00 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999974895799997217999789999998
Q gi|254781217|r 9 ERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 9 el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
|.+..+-..+..|.|...|++..|++.++|.+.++
T Consensus 23 E~a~a~~~l~~~g~s~~~iA~~~G~s~~~V~~~L~ 57 (59)
T 1vz0_A 23 EEARGYQALLEMGLTQEEVARRVGKARSTVANALR 57 (59)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999998999887299999875999999856776
No 72
>>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus} (A:)
Probab=59.02 E-value=14 Score=17.93 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=34.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89579999721799978999999848199999999999997999999999865202
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAP 75 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~ 75 (162)
.|.|++.||+.-|++..|||+... +.+++ +..+-....+.+.+.+.+..+..
T Consensus 30 ~~~ti~~IA~~agvs~~tiY~yF~-sK~~L---~~~~~~~~~~~~~~~~~~~~~~~ 81 (196)
T 3he0_A 30 QGLSXQKLANEAGVAAGTIYRYFS-DKEHL---LEEVRLNVAKRIASAVQAGVNDD 81 (196)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCS-SHHHH---HHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCC-CHHHH---HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 306799999980999786511189-99999---99999998999999999861358
No 73
>>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} (A:)
Probab=58.98 E-value=13 Score=18.02 Aligned_cols=56 Identities=13% Similarity=0.248 Sum_probs=35.7
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999974-89579999721799978999999848199999999999997999999999865
Q gi|254781217|r 13 NILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 13 ~Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
+++..-+ +|.|++.||+.-|++..|||+.... .++ -+..+.....+.+.+.+.+..
T Consensus 25 ~l~~~~G~~~~si~~IA~~agvs~~t~Y~yF~s-K~~---L~~~~~~~~~~~~~~~~~~~~ 81 (199)
T 3crj_A 25 RALREHGYADLTIQRIADEYGKSTAAVHYYYDT-KDD---LLAAFLDYLLERFVDSIHDVE 81 (199)
T ss_dssp HHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSS-HHH---HHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999973925188999999979199999542798-999---999999999999999998740
No 74
>>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} (A:)
Probab=58.19 E-value=14 Score=17.84 Aligned_cols=51 Identities=10% Similarity=0.147 Sum_probs=33.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8957999972179997899999984819999999999999799999999986520
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEA 74 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~ 74 (162)
.|.|++.||+.-|++..|||+... +.+++ +..+-....+.+.+.+.+..+.
T Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~-sK~~L---~~~~~~~~~~~~~~~~~~~~~~ 81 (200)
T 2hyj_A 31 DGITIGRLAEELEMSKSGVHKHFG-TKETL---QISTLDKAFVDFWHRVVEPALA 81 (200)
T ss_dssp GGCCHHHHHHHHTCCHHHHHTTCS-SHHHH---HHHHHHHHHHHHHHHHTGGGGG
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 416799999987838012765658-99999---9999999989999999999752
No 75
>>3bhq_A Transcriptional regulator; NP_105615.1, bacterial regulatory proteins, TETR family, structural genomics; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099} (A:)
Probab=58.11 E-value=14 Score=17.83 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=32.6
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89579999721799978999999848199999999999997999999999865
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
.|.|++.||+.-|++..|||+.... .+++-......--.+.....++++...
T Consensus 31 ~~~t~~~IA~~aGvs~~~iy~yF~s-K~~L~~~~~~~~~~~~~~~~~~~~~~~ 82 (211)
T 3bhq_A 31 DGTSXEEIATKAGASKQTVYKHFTD-KETLFGEVVLSTASQVNDIIESVTTLL 82 (211)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5177999999848790138753898-899999999999999999998886313
No 76
>>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2} (A:1-72)
Probab=57.83 E-value=9.5 Score=18.97 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=23.0
Q ss_pred HHHHHH-CCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999974-89579999721799978999999
Q gi|254781217|r 14 ILASFS-GGLSLSQSCKKHGVTVVSFHGWV 42 (162)
Q Consensus 14 Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl 42 (162)
++.+-+ +|.|+..||+.-||+..+||++.
T Consensus 42 lf~~~G~~~~si~~Ia~~agvs~~~iY~~F 71 (72)
T 3bru_A 42 HLTEKGYSSVGVDEILKAARVPKGSFYHYF 71 (72)
T ss_dssp HHHHSCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHCCCCCCHHHHHHHHCCCCCCHHHCC
T ss_conf 999849150679999998688963233257
No 77
>>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP} (A:)
Probab=57.81 E-value=14 Score=17.80 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=38.3
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999974-89579999721799978999999848199999999999997999999999865202
Q gi|254781217|r 13 NILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAP 75 (162)
Q Consensus 13 ~Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~ 75 (162)
+++..-+ .|.|++.||+.-|++..|||+.... .++ -+..+.....+.+.+.+.++.+..
T Consensus 25 ~lf~~~G~~~~t~~~IA~~agvs~~tiY~~F~s-K~~---L~~~~~~~~~~~~~~~~~~~~~~~ 84 (212)
T 3knw_A 25 HLVLRKGFVGVGLQEILKTSGVPKGSFYHYFES-KEA---FGCELLKHYISDYQIRLNQLWTTE 84 (212)
T ss_dssp HHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSS-HHH---HHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCC-HHH---HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999870955288999999979099999888589-999---999999999999999999998437
No 78
>>2np5_A Transcriptional regulator; TETR family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} (A:)
Probab=57.72 E-value=14 Score=17.79 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=25.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|.|++.||+.-|++..|||+.... .+++-.
T Consensus 28 ~~~ti~~Ia~~agvs~~t~Y~~F~s-Ke~Ll~ 58 (203)
T 2np5_A 28 EGASVREVAKRAGVSIGAVQHHFST-KDEXFA 58 (203)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSS-HHHHHH
T ss_pred CCCCHHHHHHHHCCCCHHHCCCCCC-HHHHHH
T ss_conf 3077999999868996322006899-999999
No 79
>>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3} (A:1-85)
Probab=57.30 E-value=12 Score=18.39 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=22.8
Q ss_pred HHHHHH-CCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 999974-89579999721799978999999
Q gi|254781217|r 14 ILASFS-GGLSLSQSCKKHGVTVVSFHGWV 42 (162)
Q Consensus 14 Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl 42 (162)
++..-+ .|.|++.||+.-|++..+||+++
T Consensus 55 lf~~~G~~~~si~~IA~~agvs~~~~Y~yF 84 (85)
T 3bni_A 55 LLDEVGYDALSTRAVALRADVPIGSVYRFF 84 (85)
T ss_dssp HHHHHCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HHHHHCCCCCCHHHHHHHHCCCCCCHHHCC
T ss_conf 999849330779999998288965201208
No 80
>>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} (A:)
Probab=57.07 E-value=13 Score=17.99 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=27.3
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 9999974-89579999721799978999999848
Q gi|254781217|r 13 NILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 13 ~Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
-|...|. .|-.++.+++..|++.+|||+++.+.
T Consensus 23 ~i~~aL~~~~gn~~~aA~~Lgisr~tL~~klkk~ 56 (63)
T 3e7l_A 23 FIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999919989999999895999999999994
No 81
>>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} (A:1-106)
Probab=56.73 E-value=14 Score=17.96 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999999999974895--------799997217999789999998
Q gi|254781217|r 7 TKERIDNILASFSGGL--------SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 7 t~el~d~Ic~~Ia~G~--------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
...+++.|++.|.+|. |.+.+|...|++..|+.+=+.
T Consensus 13 ~~~i~~~l~~~I~~g~l~~G~~LPs~~~La~~~~vSr~tvr~Al~ 57 (106)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYK 57 (106)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999859999949984499999996989899999999
No 82
>>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP} (A:)
Probab=56.34 E-value=15 Score=17.65 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=38.5
Q ss_pred HHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999974-8957999972179997899999984819999999999999799999999986520263
Q gi|254781217|r 14 ILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLT 77 (162)
Q Consensus 14 Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~~~ 77 (162)
++..-+ .|.|++.||+.-|++..|||+... +.+++ +........+.+.+.+.++.+...+
T Consensus 26 l~~~~G~~~~t~~~Ia~~agvs~~tiY~~F~-sK~~L---~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (203)
T 3f1b_A 26 VFSDRGFHETSXDAIAAKAEISKPXLYLYYG-SKDEL---FAACIQREGLRFVEALAPAGDPGLS 86 (203)
T ss_dssp HHHHHCTTTCCHHHHHHHTTSCHHHHHHHCC-SHHHH---HHHHHHHHHHHHHHHHGGGGCTTCC
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9997293417799999998909889978829-99999---9999999999999999886345899
No 83
>>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A (A:)
Probab=56.12 E-value=15 Score=17.62 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=25.2
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|.|++.||+.-|++..|||+.... .+++-.
T Consensus 27 ~~~ti~~Ia~~agvs~~tiY~~F~s-K~~L~~ 57 (195)
T 3frq_A 27 IEFTLSGVAKEVGLSRAALIQRFTN-RDTLLV 57 (195)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHHCS-HHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHCCC-HHHHHH
T ss_conf 3077999999878994048874939-999999
No 84
>>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} (A:)
Probab=55.81 E-value=15 Score=17.59 Aligned_cols=58 Identities=7% Similarity=0.119 Sum_probs=36.0
Q ss_pred HHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999974-89579999721799978999999848199999999999997999999999865202
Q gi|254781217|r 14 ILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAP 75 (162)
Q Consensus 14 Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~ 75 (162)
++..-+ .|.|++.||+.-|++..|||+.... .+++- ...-....+.+.+.+....+..
T Consensus 19 l~~~~G~~~~ti~~Ia~~agvs~~tiY~yF~s-K~~L~---~~~~~~~~~~~~~~~~~~~~~~ 77 (197)
T 2gen_A 19 CFSEHGVDATTIEXIRDRSGASIGSLYHHFGN-KERIH---GELYLAGIGQYAALLEAGFARA 77 (197)
T ss_dssp HHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCS-HHHHH---HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCCHHHHHHHHCCCCCCHHHHCCC-HHHHH---HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99986935177999999848496413451898-79999---9999999999999899876123
No 85
>>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} (A:)
Probab=55.80 E-value=15 Score=17.61 Aligned_cols=61 Identities=13% Similarity=-0.008 Sum_probs=37.5
Q ss_pred HHHHHHHHH-HHCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999-74895799997217999789999998481-9999--9999999997999999999
Q gi|254781217|r 9 ERIDNILAS-FSGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLE--KRYEQAKQSHMEHLSENLA 69 (162)
Q Consensus 9 el~d~Ic~~-Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~--e~Y~~Ar~~~ad~ladEil 69 (162)
.+.+.|=.. ...|.|...+|...||+.+++.+|.+-.. ..+. ..+..+.....+.|+....
T Consensus 10 ~ig~~lk~~r~~~glsq~ela~~~gis~~~i~~~e~g~~~p~~~~l~~i~~~l~i~~~~l~~~~~ 74 (84)
T 2ef8_A 10 XLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILL 74 (84)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 99999999999859999999998541587799998399689999999999994898104789881
No 86
>>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} (A:45-122)
Probab=55.78 E-value=12 Score=18.37 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHHHHHHHCC-HHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999997489-57999972179997899999984
Q gi|254781217|r 12 DNILASFSGG-LSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 12 d~Ic~~Ia~G-~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-.|+..|++| .+...|+...|++.+|+.+.++.
T Consensus 5 l~Il~~L~~~~~~~~ela~~l~~s~stvs~HL~~ 38 (78)
T 1r1t_A 5 LRLLSLLARSELCVGDLAQAIGVSESAVSHQLRS 38 (78)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999819956999999989198899999999
No 87
>>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} (A:)
Probab=55.77 E-value=15 Score=17.59 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=34.5
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8957999972179997899999984819999999999999799999999986520
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEA 74 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~ 74 (162)
+|.|++.||+.-|++..|||+.... .+++ +...-....+.+.+.+.+....
T Consensus 27 ~~~ti~~Ia~~agvs~~tiY~~F~s-K~~L---~~~~~~~~~~~~~~~~~~~~~~ 77 (183)
T 1zk8_A 27 QEVTLASLAQTLGVRSPSLYNHVKG-LQDV---RKNLGIYGIKKLHNRLEEAAED 77 (183)
T ss_dssp GGCCHHHHHHHHTSCHHHHTTTCSS-HHHH---HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCCCHHHHCCCC-HHHH---HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4057999999858894303322898-7889---9999999999999999987400
No 88
>>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} (A:)
Probab=55.71 E-value=15 Score=17.58 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=36.5
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8957999972179997899999984819999999999999799999999986520263
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLT 77 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~~~ 77 (162)
.|.|++.||+.-|++..|||+.... .+++ +...-+...+.+.+.+..+.+...+
T Consensus 28 ~~~ti~~IA~~agvs~~t~Y~yF~s-K~~L---~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (215)
T 1ui5_A 28 ESTTLSEIVAHAGVTKGALYFHFAA-KEDL---AHAILEIQSRTSRRLAKDLDGRGYS 81 (215)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSS-HHHH---HHHHHHHHHHHHHHHHHHTTSSSCC
T ss_pred CCCCHHHHHHHHCCCCCCHHHCCCC-HHHH---HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 5288999999868894508651999-9999---9988999999999999976246899
No 89
>>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3} (A:)
Probab=55.30 E-value=16 Score=17.54 Aligned_cols=61 Identities=7% Similarity=0.062 Sum_probs=39.5
Q ss_pred HHHHHHHHH---H-CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999997---4-8957999972179997899999984819999999999999799999999986520
Q gi|254781217|r 10 RIDNILASF---S-GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEA 74 (162)
Q Consensus 10 l~d~Ic~~I---a-~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~ 74 (162)
+.+.-.+.+ + .|.|++.||+.-|++..|||+.... .++ -+....+...+.+.+.+.+....
T Consensus 40 Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~tiY~yF~s-Ke~---L~~~~~~~~~~~~~~~~~~~~~~ 104 (221)
T 3g7r_A 40 LLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSG-KDD---LILAYLDQADRGIRAQVTAARGS 104 (221)
T ss_dssp HHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHCSS-HHH---HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCC-HHH---HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999984915074999999878996841106899-999---99999999999999999998725
No 90
>>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1} (A:)
Probab=55.25 E-value=16 Score=17.53 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=25.2
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|.|++.||+.-|++..|||+.... .+++-.
T Consensus 54 ~~~ti~~IA~~agvs~~t~Y~~F~s-K~~L~~ 84 (237)
T 3kkd_A 54 RAVRHRAVAAEAQVPLSATTYYFKD-IDDLIT 84 (237)
T ss_dssp GGCCHHHHHHHHTSCTTTC-----C-HHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHH
T ss_conf 5087999999989298999887889-999999
No 91
>>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} (A:)
Probab=55.16 E-value=7.4 Score=19.70 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=20.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 79999721799978999999848
Q gi|254781217|r 23 SLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 23 SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
++..+|...|++.+|+|+|+.+.
T Consensus 12 ~~~eva~~lgis~~ti~~~~~~G 34 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 49999999797899986673189
No 92
>>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp} (A:)
Probab=54.93 E-value=16 Score=17.50 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=45.5
Q ss_pred HHHHHHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHHC---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999-97489579999721799978999999848---------199999999999997999999999865
Q gi|254781217|r 10 RIDNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQD---------REDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 10 l~d~Ic~-~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd---------~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
+.+.|-+ |...|.|+..+++..|++..++.+|-+.+ .-++-..|+++.....+.++...-+..
T Consensus 4 ig~~lr~~R~~~glt~~elA~~~gis~~~is~~E~g~~~p~~~~~~~~~~l~~ia~~l~i~~~~l~~~~~~~~ 76 (130)
T 3fym_A 4 VGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQAHQDEI 76 (130)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9999999999969999999988298999999998589654643169999999999995959999999998764
No 93
>>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} (A:1-72)
Probab=54.63 E-value=15 Score=17.64 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHH-CC--HHHHHHHHCCCCC-HHHHHHHHHH
Q ss_conf 9999999999974-89--5799997217999-7899999984
Q gi|254781217|r 7 TKERIDNILASFS-GG--LSLSQSCKKHGVT-VVSFHGWVKQ 44 (162)
Q Consensus 7 t~el~d~Ic~~Ia-~G--~SLr~Ick~~gmp-~~Tv~~Wl~k 44 (162)
-.++.+-|++.+. +| -|.+.||+..|+. .+|++..+..
T Consensus 8 q~~iL~~I~~~~~~~g~pps~rei~~~~g~~S~stV~~~l~~ 49 (72)
T 1jhf_A 8 QQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (72)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 999999999999982989769999998299973789998751
No 94
>>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} (A:1-74)
Probab=54.63 E-value=16 Score=17.47 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=27.3
Q ss_pred HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 9999748957999972179997899999984819999
Q gi|254781217|r 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 14 Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
+...=-.+.|++.||+.-||+..|||+.... .+++-
T Consensus 21 ~~~~G~~~~ti~~Ia~~~gvs~~t~Y~yF~~-Ke~l~ 56 (74)
T 2d6y_A 21 FARHGIAGARIDRIAAEARANKQLIYAYYGN-KGELF 56 (74)
T ss_dssp HHHHTTTSCCHHHHHHHHTCCHHHHHHHHSS-HHHHH
T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH
T ss_conf 9974914077999999859198899678779-99999
No 95
>>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A (A:103-184)
Probab=54.45 E-value=6.6 Score=20.01 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=37.6
Q ss_pred HHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 242999999999997489579999721799978999999848199999
Q gi|254781217|r 4 HKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
..+++...+-|.-+.-.|.|...|+...|++..|+.+++.+....+++
T Consensus 32 ~~L~~~~r~v~~l~~~~g~s~~eIA~~lgis~~~v~~~l~ra~~~Lr~ 79 (82)
T 2q1z_A 32 ARLPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRLRQ 79 (82)
T ss_dssp HTSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 874689988999999919899999999893999999999999999998
No 96
>>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (F:336-423)
Probab=54.40 E-value=16 Score=17.44 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHH----HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHH
Q ss_conf 2999999999997----48957999972179997899999984819999999
Q gi|254781217|r 6 YTKERIDNILASF----SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRY 53 (162)
Q Consensus 6 yt~el~d~Ic~~I----a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y 53 (162)
+++..-.-|--+. ..|.|...|+...|+|..|+..++.+.-..++..+
T Consensus 26 L~~~~r~vi~lr~~~~~~e~~s~~eIA~~lgis~~tV~~~~~ra~~~Lr~~l 77 (88)
T 2a6h_F 26 LSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLKYHE 77 (88)
T ss_dssp SCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCH
T ss_conf 9999999999706678998603999999989699999999999999988777
No 97
>>2ezk_A Transposase; DNA-binding protein, transposition, transposable element; NMR {Enterobacteria phage MU} (A:)
Probab=54.13 E-value=16 Score=17.41 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCHHH----HHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999997489579----99972179997899999984
Q gi|254781217|r 10 RIDNILASFSGGLSL----SQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 10 l~d~Ic~~Ia~G~SL----r~Ick~~gmp~~Tv~~Wl~k 44 (162)
..-.+-..+.+|.+. ..+|...|++.+|+++|...
T Consensus 38 ~l~~v~~L~~~G~~~~~A~~~Va~~~~vs~~tL~nW~~~ 76 (99)
T 2ezk_A 38 AVQAADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQ 76 (99)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999869828999999999969889999999999
No 98
>>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:)
Probab=54.06 E-value=16 Score=17.41 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=25.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|.|++.||+.-|++..|||+.... .+++-.
T Consensus 26 ~~~si~~IA~~agvs~~tlY~~F~s-K~~L~~ 56 (235)
T 2fbq_A 26 AETSLRLITSKAGVNLAAVNYHFGS-KKALIQ 56 (235)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHTCS-HHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHH
T ss_conf 4077999999979398899998699-999999
No 99
>>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A* (A:1-67)
Probab=54.01 E-value=16 Score=17.40 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=25.9
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 489579999721799978999999848199999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
-+|.|++.||+.-|++..|||+.... .+++-.
T Consensus 24 ~~~~t~~~Ia~~agvs~~~~Y~~F~~-k~~L~~ 55 (67)
T 2opt_A 24 LDALSMRRLAQELKTGHASLYAHVGN-RDELLD 55 (67)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHHCS-HHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHH
T ss_conf 45257999999979298799998799-999999
No 100
>>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} (A:1-76)
Probab=53.95 E-value=13 Score=18.17 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=36.6
Q ss_pred CHHCCHHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHHHHHHHHH
Q ss_conf 1242999999999997-4895799997217999789999998481-99999999999
Q gi|254781217|r 3 AHKYTKERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLEKRYEQAK 57 (162)
Q Consensus 3 ~~Kyt~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~e~Y~~Ar 57 (162)
-......+.+.|-... ..|.|...+++..|++.+++.+|.+-.. ..+..-+.-|.
T Consensus 5 ~~~~~~~~~~~lk~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~ 61 (76)
T 1y9q_A 5 DVXFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAXLGQIERGESSPTIATLWKIAS 61 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 788999999999999998299999999998949999999976997555369999987
No 101
>>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} (A:)
Probab=52.63 E-value=15 Score=17.71 Aligned_cols=49 Identities=18% Similarity=0.017 Sum_probs=31.5
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89579999721799978999999848199999999999997999999999865
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
.|.|++.||+.-|++..|||+.... .+++-. ..-....+.+.+.+....
T Consensus 32 ~~~ti~~IA~~agvs~~tiY~yF~s-K~~L~~---~~~~~~~~~~~~~~~~~~ 80 (210)
T 2qco_A 32 QETSLSDIIKLSGGSYSNIYDGFKS-KEGLFF---EILDDICKKHFHLIYSKT 80 (210)
T ss_dssp TTCCHHHHHHHHCTTCTTCSSSTTS-HHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCCHHHHHCCC-HHHHHH---HHHHHHHHHHHHHHHHHH
T ss_conf 5278999998729997403652999-899999---999999999999999987
No 102
>>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus} (A:1-69)
Probab=52.47 E-value=7 Score=19.83 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHH
Q ss_conf 9999999974----8957999972179997899999984819999999
Q gi|254781217|r 10 RIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRY 53 (162)
Q Consensus 10 l~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y 53 (162)
+.+.-.+.+. .+-|++.||+.-|++..|||+.... .+++-..+
T Consensus 9 il~aa~~~~~~~G~~~~t~~~Ia~~~gis~~t~Y~~F~~-K~~L~~~~ 55 (69)
T 3egq_A 9 IIEAALRLYXKKPPHEVSIEEIAREAKVSKSLIFYHFES-KQKLLEEA 55 (69)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCSS-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCC-HHHHHHHH
T ss_conf 999999999872923067999999868394207650899-99999999
No 103
>>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} (A:)
Probab=52.46 E-value=14 Score=17.77 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHCCH--------HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 29999999999974895--------799997217999789999998
Q gi|254781217|r 6 YTKERIDNILASFSGGL--------SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 6 yt~el~d~Ic~~Ia~G~--------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
....+.+.|.+.|.+|. |.+.+|+..|++..|+.+=+.
T Consensus 12 ~~~~i~~~i~~~I~~G~l~~G~~LPs~~~La~~~~vSr~tvr~Al~ 57 (102)
T 1v4r_A 12 GYADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp CHHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999999849999969986899999997979999999999
No 104
>>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3} (A:)
Probab=52.32 E-value=15 Score=17.64 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=29.4
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 99999999974----8957999972179997899999984819999
Q gi|254781217|r 9 ERIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 9 el~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
.+.+.-.+.++ .|.|++.||+.-|++..|||+.... .+++-
T Consensus 33 ~Il~aA~~l~~e~G~~~~si~~IA~~aGvs~~tiY~~F~s-K~~L~ 77 (241)
T 2hxi_A 33 QILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRN-KTELL 77 (241)
T ss_dssp HHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSS-HHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH
T ss_conf 9999999999971923077999999979198799999799-89999
No 105
>>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} (A:1-50)
Probab=51.31 E-value=16 Score=17.50 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=25.0
Q ss_pred HHHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99999999974----8957999972179997899999
Q gi|254781217|r 9 ERIDNILASFS----GGLSLSQSCKKHGVTVVSFHGW 41 (162)
Q Consensus 9 el~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~W 41 (162)
.+.+.-++.++ .|.|++.||+.-|++..+||+.
T Consensus 12 ~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~ 48 (50)
T 2o7t_A 12 HIITTTCNLYRTHHHDSLTXENIAEQAGVGVATLYRN 48 (50)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHCC
T ss_conf 9999999999985914077999999858894421227
No 106
>>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} (A:)
Probab=51.25 E-value=18 Score=17.12 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=25.4
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|.|++.||+.-|++..|||+.... .+++-.
T Consensus 22 ~~~s~~~Ia~~agvs~~t~Y~~F~s-Ke~L~~ 52 (208)
T 2g3b_A 22 RGLRVNDVAEVAGVSPGLLYYHFKD-RIGLLE 52 (208)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHHCS-HHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHCCCC-HHHHHH
T ss_conf 4162999999989099999401899-999999
No 107
>>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} (A:)
Probab=51.13 E-value=16 Score=17.54 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCH-HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999974895-799997217999789999998
Q gi|254781217|r 11 IDNILASFSGGL-SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 11 ~d~Ic~~Ia~G~-SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
--.|+..|+.|. +...++...|++.+|+.+.++
T Consensus 13 Rl~Il~~L~~g~~tv~eLa~~lgis~~tvS~HL~ 46 (165)
T 2vxz_A 13 LRDILALLADGCKTTSLIQQRLGLSHGRAKALIY 46 (165)
T ss_dssp HHHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999999975450899999982650899999999
No 108
>>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum} (A:46-103)
Probab=51.12 E-value=18 Score=17.17 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHCC-HHHHHHHHCCCCCH-HHHHHHHHH
Q ss_conf 99999999997489-57999972179997-899999984
Q gi|254781217|r 8 KERIDNILASFSGG-LSLSQSCKKHGVTV-VSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia~G-~SLr~Ick~~gmp~-~Tv~~Wl~k 44 (162)
.-..+.+|..|.+| .|+..|+...|... ++|+++.++
T Consensus 9 ~~R~~~a~~~L~~~~~~i~~IA~~~Gf~~~s~F~r~Fk~ 47 (58)
T 3lsg_A 9 QKRXEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKK 47 (58)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999979999998541248889999978889999999999
No 109
>>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa} (A:)
Probab=50.80 E-value=18 Score=17.07 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=31.5
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89579999721799978999999848199999999999997999999999865
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
.|.|++.||+.-|++..|||+.... .+++-. ..-....+.+.+.+.+..
T Consensus 33 ~~~si~~Ia~~agvs~~t~Y~yF~s-K~~L~~---~~~~~~~~~~~~~~~~~~ 81 (215)
T 3e7q_A 33 QGASVRKICAEAGVSVGLINHHYDG-KDALVA---EAYLAVTGRVMRLLRGAI 81 (215)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHCSS-HHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHH---HHHHHHHHHHHHHHHHHH
T ss_conf 4077999999979488889888599-999999---999999999999998876
No 110
>>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens} (A:1-72)
Probab=50.73 E-value=7.6 Score=19.61 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=26.6
Q ss_pred HHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 997489579999721799978999999848199999
Q gi|254781217|r 16 ASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 16 ~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
+.=-.+.|++.||+.-||+..|||+.... .+++-.
T Consensus 23 ~~G~~~~t~~~ia~~~gvs~~~~Y~~F~~-K~~l~~ 57 (72)
T 3dew_A 23 QKGFYGVSIRELAQAAGASISXISYHFGG-KEGLYA 57 (72)
T ss_dssp HHCGGGCCHHHHHHHHTCCHHHHHHHSCH-HHHHHH
T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHH
T ss_conf 85924177999999969399999666589-999998
No 111
>>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP} (A:)
Probab=50.69 E-value=10 Score=18.77 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=25.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|.|++.||+.-|++..|||+.... .+++-.
T Consensus 47 ~~~ti~~Ia~~agvs~~tlY~~F~s-K~~L~~ 77 (215)
T 2qko_A 47 RGLTFRAVDVEANVPKGTASNYFPS-RDDLFD 77 (215)
T ss_dssp TTCCHHHHHHHSSSTTTCHHHHCSC-HHHHHH
T ss_pred CCCCHHHHHHHHCCCCCEECCCCCC-HHHHHH
T ss_conf 3078999999968996840113899-899999
No 112
>>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} (A:)
Probab=50.66 E-value=10 Score=18.81 Aligned_cols=44 Identities=16% Similarity=0.040 Sum_probs=30.8
Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHHHHHHHHHHHH
Q ss_conf 974895799997217999789999998481-99999999999997
Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLEKRYEQAKQSH 60 (162)
Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~e~Y~~Ar~~~ 60 (162)
+...|.|...+|+..|++.+|+.+|.+... ..+..-+.-|...+
T Consensus 10 R~~~g~tq~~lA~~~gis~s~is~~e~g~~~p~~~~l~~i~~~l~ 54 (66)
T 1utx_A 10 REKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLN 54 (66)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 998599999999975969999999987997899999999999989
No 113
>>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} (A:)
Probab=50.33 E-value=18 Score=17.17 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHH--CCHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 999999999974--895799997217999789999998481999
Q gi|254781217|r 8 KERIDNILASFS--GGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 8 ~el~d~Ic~~Ia--~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
..+.+.-.+.++ .+.|++.||+.-||+..|||++.... +++
T Consensus 14 ~~Il~aA~~lf~e~G~~s~~~IA~~agvs~~t~Y~~F~sK-e~L 56 (213)
T 2g7g_A 14 ERIAEAALELVDRDGDFRXPDLARHLNVQVSSIYHHAKGR-AAV 56 (213)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHTTSCHHHHHTTSCHH-HHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCCCH-HHH
T ss_conf 9999999999997299609999999692854442566999-999
No 114
>>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} (A:1-62)
Probab=49.41 E-value=15 Score=17.63 Aligned_cols=45 Identities=11% Similarity=0.173 Sum_probs=32.9
Q ss_pred CHHCCHHHHHHHHHHHHC-CHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 124299999999999748-95799997217999789999998481999
Q gi|254781217|r 3 AHKYTKERIDNILASFSG-GLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 3 ~~Kyt~el~d~Ic~~Ia~-G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
.+|-..++...|+.+|+. |. +.+++..|++.+|+.||...+-+.|
T Consensus 6 ~Rk~~~~ies~iL~~la~~gq--~~vAe~iGv~eStISR~k~~~~~~~ 51 (62)
T 1xwr_A 6 KRNEALRIESALLNKIAMLGT--EKTAEAVGVDKSQISRWKRDWIPKF 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHCH--HHHHHHHTCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 367999999999999999833--5489982987988514431379999
No 115
>>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} (A:)
Probab=48.90 E-value=17 Score=17.35 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=29.2
Q ss_pred CHHCCHHHHHHHHHHHHC---CH--HHHHHHHCCCCCHHHHHHHH
Q ss_conf 124299999999999748---95--79999721799978999999
Q gi|254781217|r 3 AHKYTKERIDNILASFSG---GL--SLSQSCKKHGVTVVSFHGWV 42 (162)
Q Consensus 3 ~~Kyt~el~d~Ic~~Ia~---G~--SLr~Ick~~gmp~~Tv~~Wl 42 (162)
++..+.++.+.||+.|-+ |. +...|.+..|+|...+-+-|
T Consensus 4 ~ls~~~d~e~kIl~~L~~~~~~~~~tA~~LAk~Lgi~Kk~vNr~L 48 (81)
T 1qbj_A 4 MLSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp --CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 244576889999999985489975109999999698888989999
No 116
>>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV} (A:1-51)
Probab=48.89 E-value=14 Score=17.79 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=20.6
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 48957999972179997899999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGW 41 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~W 41 (162)
-+|.|++.||+.-|++..+||++
T Consensus 27 ~~~~s~~~Ia~~aGvs~g~iY~~ 49 (51)
T 3cdl_A 27 FEITSXDRIAARAEVSKRTVYNH 49 (51)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHTT
T ss_pred CCCCCHHHHHHHHCCCCCCHHHH
T ss_conf 25188999999868896614530
No 117
>>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A (A:)
Probab=48.85 E-value=20 Score=16.88 Aligned_cols=63 Identities=10% Similarity=-0.033 Sum_probs=42.8
Q ss_pred HHHHHHHHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHHC--H-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999-97489579999721799978999999848--1-999999999999979999999998
Q gi|254781217|r 8 KERIDNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQD--R-EDLEKRYEQAKQSHMEHLSENLAS 70 (162)
Q Consensus 8 ~el~d~Ic~-~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd--~-eef~e~Y~~Ar~~~ad~ladEile 70 (162)
..+...|-. +...|.|...+|+..|++.+++.+|.+-. + -+.-.+++++.....+.|++...+
T Consensus 27 ~~i~~~lk~~r~~~gltq~elA~~~gis~~~i~~~e~G~~~~s~~~l~~ia~~l~v~~~~l~~~~~~ 93 (99)
T 3g5g_A 27 SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 93 (99)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999998499999999656774238999974234475999999999959999999814389
No 118
>>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} (A:)
Probab=48.54 E-value=20 Score=16.85 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=25.4
Q ss_pred HHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999997-48957999972179997899999984
Q gi|254781217|r 13 NILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 13 ~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.|...| -.|.||+++++..|++++|+..=+.+
T Consensus 13 dI~AaL~krG~sLa~lsr~~gls~stl~nal~r 45 (74)
T 1neq_A 13 DVIAGLKKRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 999999996887999999909987899998837
No 119
>>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A (A:)
Probab=48.36 E-value=20 Score=16.83 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=33.1
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 895799997217999789999998481999999999999979999999998652
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162)
.|.|++.||+.-|++..|||+.... .+++ +..+-+...+.+.+.+....+
T Consensus 26 ~~~t~~~Ia~~agvs~~tiY~~F~s-K~~L---~~~~~~~~~~~~~~~~~~~~~ 75 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYHYDN-KEEI---YRKSVENCFNYFIDFXXRNHD 75 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTCC-HHHH---HHHHHHHHHHHHHHHC-----
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHH---HHHHHHHHHHHHHHHHHHHCC
T ss_conf 5066999999879099999676389-9999---999999999999999997504
No 120
>>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} (A:10-83)
Probab=48.21 E-value=19 Score=16.93 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHCC-HHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999997489-57999972179997899999984
Q gi|254781217|r 8 KERIDNILASFSGG-LSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia~G-~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
...--.|+..|++| .+...|....|||.+|+...++.
T Consensus 10 ~p~Rl~IL~~L~~~~~~~~eia~~l~is~~tvS~HL~~ 47 (74)
T 1uly_A 10 EDTRRKILKLLRNKEXTISQLSEILGKTPQTIYHHIEK 47 (74)
T ss_dssp SHHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999829968999999989099999999999
No 121
>>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ... (B:1-71)
Probab=48.15 E-value=20 Score=16.81 Aligned_cols=32 Identities=13% Similarity=-0.003 Sum_probs=26.0
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 489579999721799978999999848199999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
-+|-|++.||+.-|++..|||+.... .+++-.
T Consensus 20 ~~~~t~~~Ia~~agis~~t~y~~F~~-Ke~L~~ 51 (71)
T 3bqz_B 20 YNATTTGEIVKLSESSKGNLYYHFKT-KENLFL 51 (71)
T ss_dssp TTTCCHHHHHHHTTCCHHHHHHHTSS-HHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHH
T ss_conf 15177999999879098888143889-999999
No 122
>>2pbx_A Hemagglutinin/protease regulatory protein; quorum sensing, transcription factor, TETR family, DNA-binding, transcription regulation; 2.20A {Vibrio cholerae 2740-80} (A:)
Probab=47.87 E-value=20 Score=16.78 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=38.8
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8957999972179997899999984819999999999999799999999986520263
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLT 77 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~~~ 77 (162)
.|.|++.||+.-|++..|||+.... .++ -+..+.....+.+.+.+..+.+...+
T Consensus 36 ~~~ti~~IA~~agvs~~tiY~~F~s-K~~---L~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (203)
T 2pbx_A 36 GRGGHADIAEIAQVSVATVFNYFPT-RED---LVDDVLNFVVRQYSNFLTDHIDLDLD 89 (203)
T ss_dssp TCCCHHHHHHHHTSCHHHHHHHSSS-HHH---HHHHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCC-HHH---HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4077999998839985422326898-799---99999999999999999999852699
No 123
>>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444} (A:1-66)
Probab=47.71 E-value=16 Score=17.47 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=25.5
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 48957999972179997899999984819999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
-++.|++.||+..|++..|||+.... .+++-
T Consensus 29 ~~~~s~~~Ia~~~gvs~~~iY~~F~~-K~~L~ 59 (66)
T 2ras_A 29 GAGLTLSELAARAGISQANLSRYFET-REDLX 59 (66)
T ss_dssp SSCCCHHHHHHHHTSCHHHHTTTCSS-HHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC-HHHHH
T ss_conf 02067999999868487568786087-78999
No 124
>>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3} (A:)
Probab=47.38 E-value=21 Score=16.73 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 9999999974----8957999972179997899999984819999
Q gi|254781217|r 10 RIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 10 l~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
+.+.-++.+. .|.|++.||+.-|++..|||++... .+++-
T Consensus 35 Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s-K~~L~ 78 (226)
T 2pz9_A 35 IVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFRS-KEALY 78 (226)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSS-HHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCCC-HHHHH
T ss_conf 999999999984934187999999948995552422999-99999
No 125
>>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} (A:1-96)
Probab=47.30 E-value=21 Score=16.72 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=46.1
Q ss_pred HCCHHHHHHHHHHH--HCCHHHHHHHHCCCCCHHHHHHHHHH--CH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42999999999997--48957999972179997899999984--81-999999999999979999999998
Q gi|254781217|r 5 KYTKERIDNILASF--SGGLSLSQSCKKHGVTVVSFHGWVKQ--DR-EDLEKRYEQAKQSHMEHLSENLAS 70 (162)
Q Consensus 5 Kyt~el~d~Ic~~I--a~G~SLr~Ick~~gmp~~Tv~~Wl~k--d~-eef~e~Y~~Ar~~~ad~ladEile 70 (162)
+....++..++..+ ..|.|...+|+..|++.+|+.+|.+- .+ -+.-.+++++.....+.|+..-.+
T Consensus 6 ~~~~~~~~~~lk~~R~~~gltq~~lA~~~gis~~~is~~e~g~~~ps~~~l~~la~~l~v~~~~l~~~~~~ 76 (96)
T 2eby_A 6 RKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAA 76 (96)
T ss_dssp -CCCCHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99748469999998776799999999987889999999993876799999999999989489999987998
No 126
>>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* (A:492-647)
Probab=47.02 E-value=21 Score=16.69 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=22.6
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 9999974895799997217999789999998481999999999
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQ 55 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~ 55 (162)
.|+..+++|.|...|++..+++.-++.+-+..- ..+..+..+
T Consensus 84 ~il~~wi~e~~~~~I~~~~~i~~G~i~~~~~~~-~~l~~~~~~ 125 (156)
T 2zj8_A 84 LVLLAWINEVPEGEIVEKYSVEPGDIYRIVETA-EWLVYSLKE 125 (156)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHH
T ss_conf 999999679987999999698999999999999-999999999
No 127
>>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP} (A:)
Probab=46.62 E-value=21 Score=16.65 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=37.3
Q ss_pred HHHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999974-895799997217999789999998481999999999999979999999998652026
Q gi|254781217|r 13 NILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPL 76 (162)
Q Consensus 13 ~Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~~ 76 (162)
.++..-+ .|.|++.||+.-|++..|||+.... .+++ +..+-....+.+.+.+....+...
T Consensus 25 ~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~yF~s-K~~L---~~~~~~~~~~~~~~~~~~~~~~~~ 85 (204)
T 2ibd_A 25 TLFAERGLRATTVRDIADAAGILSGSLYHHFDS-KESX---VDEILRGFLDDLFGKYREIVASGL 85 (204)
T ss_dssp HHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSC-HHHH---HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCC-HHHH---HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999984934177999999868883068887699-9999---999999999999999999863020
No 128
>>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} (A:)
Probab=46.48 E-value=21 Score=16.64 Aligned_cols=38 Identities=13% Similarity=-0.003 Sum_probs=30.8
Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 99999999997-489579999721799978999999848
Q gi|254781217|r 8 KERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 8 ~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
..+.+.|.... ..|.|...+++..|++.+++.+|.+-.
T Consensus 12 ~~~~~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~G~ 50 (74)
T 1y7y_A 12 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 999999999999809999999989896999999998799
No 129
>>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} (A:)
Probab=46.44 E-value=21 Score=16.64 Aligned_cols=30 Identities=10% Similarity=0.219 Sum_probs=24.8
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 8957999972179997899999984819999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
.|.|++.||+.-|++..|||+.... .+++-
T Consensus 28 ~~~ti~~Ia~~agvs~~tiY~~F~s-K~~L~ 57 (209)
T 2gfn_A 28 SAVTTRAVAEESGWSTGVLNHYFGS-RHELL 57 (209)
T ss_dssp GGCCHHHHHHHHSSCHHHHHHHTSS-HHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH
T ss_conf 3077999999969199999542599-99999
No 130
>>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} (L:)
Probab=45.92 E-value=14 Score=17.96 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=36.0
Q ss_pred HHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHC--H-HHHHHHHHHHHHHHHHHHH
Q ss_conf 999999997-489579999721799978999999848--1-9999999999999799999
Q gi|254781217|r 10 RIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQD--R-EDLEKRYEQAKQSHMEHLS 65 (162)
Q Consensus 10 l~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd--~-eef~e~Y~~Ar~~~ad~la 65 (162)
+.+.|-... ..|.|.+.+|+..|++.+|+.+|.... + .+.-.+++.+...-.+.|+
T Consensus 6 i~~~lk~~r~~~~ls~~~la~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~ 65 (68)
T 2r1j_L 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL 65 (68)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999984999999998969799999999879989999999999999797899983
No 131
>>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP} (A:)
Probab=45.77 E-value=17 Score=17.29 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=29.9
Q ss_pred HHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHH
Q ss_conf 9999999974----8957999972179997899999984819999999
Q gi|254781217|r 10 RIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRY 53 (162)
Q Consensus 10 l~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y 53 (162)
+.+.-.+.+. .|.|++.||+.-|++..|||+.... .+++-...
T Consensus 44 Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~s-K~~L~~a~ 90 (214)
T 2guh_A 44 IVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGS-KEQLFDAL 90 (214)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSS-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHHHH
T ss_conf 999999999983903067999999939898899888678-99999999
No 132
>>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} (A:1-131)
Probab=45.62 E-value=22 Score=16.55 Aligned_cols=37 Identities=0% Similarity=0.051 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHC-CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999999748-957999972179997899999984
Q gi|254781217|r 8 KERIDNILASFSG-GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia~-G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.+.--.|+..|+. +.+...|++..|++.+|+.+.++.
T Consensus 57 ~~~R~~Il~~L~~~~~~~~eLa~~l~is~~tvS~HL~~ 94 (131)
T 3f6v_A 57 EPTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRV 94 (131)
T ss_dssp SHHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999829917999999988787789998754
No 133
>>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} (A:1-68)
Probab=45.59 E-value=14 Score=17.92 Aligned_cols=28 Identities=7% Similarity=0.156 Sum_probs=24.1
Q ss_pred HHHHCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9974895799997217999789999998
Q gi|254781217|r 16 ASFSGGLSLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 16 ~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
-|-..|.|-...|...|||..|+.+|=.
T Consensus 38 lR~~~gLSQ~~fA~~lGVs~~ti~~WE~ 65 (68)
T 2ppx_A 38 IRRALKLTQEEFSARYHIPLGTLRDWEQ 65 (68)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 9999499999999996765999999987
No 134
>>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A (A:)
Probab=45.36 E-value=22 Score=16.53 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=43.0
Q ss_pred HHHHHHHHHHH--CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999974--8957999972179997899999984819999999999999799999999986520263
Q gi|254781217|r 9 ERIDNILASFS--GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLT 77 (162)
Q Consensus 9 el~d~Ic~~Ia--~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~~~ 77 (162)
.+.+.-.+.+. .+.|++.||+.-|++..|||+... +.+++ +....+...+.+.+.+.+..+...+
T Consensus 18 ~Il~aa~~l~~~~G~~ti~~Ia~~agvs~~tiY~~F~-sKe~L---~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (190)
T 2v57_A 18 AILDAAMLVLADHPTAALGDIAAAAGVGRSTVHRYYP-ERTDL---LRALARHVHDLSNAAIERADPTSGP 84 (190)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHHTCCHHHHHHHCS-SHHHH---HHHHHHHHHHHHHHHHHHHCTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999886997499999987849888977709-99999---9999999999999999987636999
No 135
>>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} (A:)
Probab=45.24 E-value=22 Score=16.58 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=24.6
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 895799997217999789999998481999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
+|.|++.||+.-|++..|||+.... .+++
T Consensus 38 ~~~ti~~IA~~agvs~~t~Y~~F~s-K~~L 66 (243)
T 2g7l_A 38 EKVTXRRLAQELDTGPASLYVYVAN-TAEL 66 (243)
T ss_dssp SSCCHHHHHHHTTSCHHHHTTTCCS-HHHH
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCC-HHHH
T ss_conf 2078999998708786651210899-9999
No 136
>>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} (A:)
Probab=45.07 E-value=17 Score=17.23 Aligned_cols=60 Identities=3% Similarity=0.004 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHH-HHCCHHHHHHHHCCCCCHHHHHHHHHH---CH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 299999999999-748957999972179997899999984---81-9999999999999799999
Q gi|254781217|r 6 YTKERIDNILAS-FSGGLSLSQSCKKHGVTVVSFHGWVKQ---DR-EDLEKRYEQAKQSHMEHLS 65 (162)
Q Consensus 6 yt~el~d~Ic~~-Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k---d~-eef~e~Y~~Ar~~~ad~la 65 (162)
+...+.+.|-.. ...|.|...+++..|++.+|+.+|.+- .+ -+.-.+++.|...-.+.|+
T Consensus 4 ~~~~~~~~i~~~r~~~~~tq~~la~~~gis~~~i~~~e~G~~~~p~~~~l~~ia~~l~v~~~~l~ 68 (78)
T 3b7h_A 4 DGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFF 68 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 79999999999999859999999999798999999999742012079999999999896799992
No 137
>>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} (A:)
Probab=45.07 E-value=23 Score=16.50 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=35.1
Q ss_pred HHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999974----89579999721799978999999848199999999999997999999999865
Q gi|254781217|r 10 RIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 10 l~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
+.+.-.+.+. .|.|++.||+.-||+..|||+.... .+++ +..+-....+.+.+.+.+..
T Consensus 46 Il~aA~~lf~~~G~~~~Ti~~IA~~agvs~~tlY~~F~s-Ke~L---~~a~~~~~~~~~~~~~~~~~ 108 (273)
T 3c07_A 46 ILETAXRLFQERGYDRTTXRAIAQEAGVSVGNAYYYFAG-KEHL---IQGFYDRIAAEHRAAVREVL 108 (273)
T ss_dssp HHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSS-HHHH---HHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999973922068999999979198899898698-7889---99999999999999999998
No 138
>>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3} (A:1-213)
Probab=45.01 E-value=23 Score=16.49 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=24.5
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 8957999972179997899999984819999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
.|.|++.||+.-|++..|||+.... .+++-
T Consensus 32 ~~~ti~~Ia~~agvs~~tiY~~F~s-K~~L~ 61 (213)
T 2qib_A 32 DEVSIDEIASAAGISRPLVYHYFPG-KLSLY 61 (213)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSS-HHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH
T ss_conf 4067999999979498799988299-68999
No 139
>>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP} (A:)
Probab=44.93 E-value=21 Score=16.70 Aligned_cols=26 Identities=8% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 89579999721799978999999848
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
.|.|++.||+.-|++..|||+.....
T Consensus 36 ~~~ti~~IA~~agvs~~tiY~~F~sK 61 (207)
T 2rae_A 36 DATSVDEVAEASGIARRTLFRYFPSK 61 (207)
T ss_dssp TTSCHHHHHHHTTSCHHHHHHHCSST
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCH
T ss_conf 41789999988398999997756888
No 140
>>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} (A:1-78)
Probab=44.71 E-value=23 Score=16.46 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999999999974895--------799997217999789999998
Q gi|254781217|r 7 TKERIDNILASFSGGL--------SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 7 t~el~d~Ic~~Ia~G~--------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
...+++.|.+.|.+|. |.+.+|...|++..|+.+=+.
T Consensus 6 ~~~i~~~l~~~I~~g~~~~G~~LPse~~La~~~~vSr~tvr~al~ 50 (78)
T 2di3_A 6 HESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALR 50 (78)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999859999819991099999998959999999999
No 141
>>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} (A:)
Probab=44.09 E-value=23 Score=16.40 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=34.0
Q ss_pred HHCCHHHHHHHHHHH----HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 242999999999997----4895799997217999789999998481999
Q gi|254781217|r 4 HKYTKERIDNILASF----SGGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~I----a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
.++++..-+-|.-+. ..|.|+..|+...|+|..||..++.+.-..+
T Consensus 17 ~~L~~~~r~vl~lry~l~~~e~~s~~EIA~~lgis~~~V~~~~~ral~kL 66 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 64999999999997177899956699999996988999999999999998
No 142
>>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP} (A:)
Probab=43.38 E-value=16 Score=17.55 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=24.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 895799997217999789999998481999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
.|.|++.||+.-|++..|||+.... .+++
T Consensus 41 ~~~si~~Ia~~agvs~~tiY~~F~s-K~~L 69 (207)
T 3bjb_A 41 ARVQXHEVAKRAGVAIGTLYRYFPS-KTHL 69 (207)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSS-HHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHCCC-HHHH
T ss_conf 3066999999868391206466599-9999
No 143
>>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822} (A:)
Probab=43.26 E-value=24 Score=16.32 Aligned_cols=54 Identities=11% Similarity=0.176 Sum_probs=36.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8957999972179997899999984819999999999999799999999986520263
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLT 77 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~~~ 77 (162)
.|.|++.||+.-|++..|||+.... .+++ +..........+.+.+.++.....+
T Consensus 33 ~~~ti~~Ia~~agvs~~tiY~~F~s-Ke~L---~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (203)
T 3ccy_A 33 SETSIGDIARACECSKSRLYHYFDS-KEAV---LRDXLTTHVDSLLERCRQVLYGSNE 86 (203)
T ss_dssp TTSCHHHHHHHTTCCGGGGTTTCSC-HHHH---HHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHHCCCCCCHHHCCCC-HHHH---HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 5187999999858294304441899-9999---9999999999999999975035898
No 144
>>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} (A:1-65)
Probab=43.18 E-value=16 Score=17.52 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=34.0
Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHHC---H-HHHHHHHHHHHHHHHHHHH
Q ss_conf 97489579999721799978999999848---1-9999999999999799999
Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQD---R-EDLEKRYEQAKQSHMEHLS 65 (162)
Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd---~-eef~e~Y~~Ar~~~ad~la 65 (162)
+.+.|.|...+++..|++.+|+.+|.+-. | -+.-.+++.+.....+.|+
T Consensus 10 r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~~l~ 62 (65)
T 1b0n_A 10 RKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLL 62 (65)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 99849999999878586799999998799899899999999999898899982
No 145
>>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A* (A:)
Probab=42.80 E-value=24 Score=16.27 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=30.9
Q ss_pred HHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 9999999974----895799997217999789999998481999999999
Q gi|254781217|r 10 RIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQ 55 (162)
Q Consensus 10 l~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~ 55 (162)
+.+.-.+.++ .+.|++.||+.-|++..|||+.... .+++-..+..
T Consensus 49 Il~aA~~l~~~~G~~~~ti~~IA~~agvs~~tiY~yF~s-K~~Ll~~~~~ 97 (256)
T 3g1l_A 49 ILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPS-KEAVLLTLLD 97 (256)
T ss_dssp HHHHHHHHTTTSCGGGCCHHHHHHHHTCCHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHHHHHH
T ss_conf 999999999983923162999999979099888367688-8999999999
No 146
>>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5} (A:)
Probab=42.79 E-value=24 Score=16.27 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=32.1
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 489579999721799978999999848199999999999997999999999865
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
-.|.|++.||+.-|++..|||+.... .+++-.. .-+...+.+.+.+.+..
T Consensus 20 ~~~~ti~~IA~~agvs~~tiY~~F~s-K~~L~~~---~~~~~~~~~~~~~~~~~ 69 (179)
T 2eh3_A 20 YQGTSVEEIVKRANLSKGAFYFHFKS-KEELITE---IIERTHKKIISLFEENK 69 (179)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHCSS-HHHHHHH---HHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCCCCCCHHHHCCC-HHHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 35075999999868193401142899-9999999---99999999999998621
No 147
>>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi} (A:)
Probab=42.43 E-value=20 Score=16.82 Aligned_cols=29 Identities=7% Similarity=0.082 Sum_probs=25.5
Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 97489579999721799978999999848
Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
|...|.|...++...|++.+++.+|.+..
T Consensus 23 R~~~gltq~~lA~~~gis~~~is~~E~g~ 51 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAKVETRE 51 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 99849999999999796999999998899
No 148
>>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} (A:)
Probab=41.74 E-value=12 Score=18.39 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.8
Q ss_pred HHCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 7489579999721799978999999
Q gi|254781217|r 18 FSGGLSLSQSCKKHGVTVVSFHGWV 42 (162)
Q Consensus 18 Ia~G~SLr~Ick~~gmp~~Tv~~Wl 42 (162)
+..|.+|-+|++.+|++...+.+|=
T Consensus 7 V~~GDTL~~IA~ky~v~~~~l~~~N 31 (48)
T 1e0g_A 7 VRKGDSLSSIAKRHGVNIKDVMRWN 31 (48)
T ss_dssp ECTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ECCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 8899899999999894999999874
No 149
>>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3} (A:)
Probab=41.69 E-value=24 Score=16.26 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=24.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 8957999972179997899999984819999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
.|.|++.||+.-||+..|||++... .+++-
T Consensus 35 ~~~ti~~Ia~~aGvs~~t~Y~~F~s-K~~L~ 64 (237)
T 2hxo_A 35 RGLTFRALAERLATGPGAIYWHITG-KAELL 64 (237)
T ss_dssp TTCCHHHHHHHHTSCGGGGGGTCCC-HHHHH
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCC-HHHHH
T ss_conf 4167999999868897774104969-89999
No 150
>>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} (A:1-96)
Probab=41.63 E-value=22 Score=16.58 Aligned_cols=38 Identities=13% Similarity=-0.013 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHCCH--------HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 29999999999974895--------799997217999789999998
Q gi|254781217|r 6 YTKERIDNILASFSGGL--------SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 6 yt~el~d~Ic~~Ia~G~--------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
....+++.|.+.|.+|. |.+.+|...|++..|+.+=+.
T Consensus 30 ~~~~i~~~i~~~I~~g~~~pG~~LPs~~~La~~~gvsr~tvr~Al~ 75 (96)
T 3eet_A 30 AYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARK 75 (96)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 7999999999999849999939991799999998959999999999
No 151
>>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} (A:1-79)
Probab=41.20 E-value=26 Score=16.12 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHH--CC-HHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999999974--89-57999972179997899999984
Q gi|254781217|r 8 KERIDNILASFS--GG-LSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia--~G-~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.+-...|+..|. .| .|+..+|...|++.+|+++-+..
T Consensus 20 ~~R~~~Il~~L~~~~~~vt~~eLa~~l~VS~~Ti~rdl~~ 59 (79)
T 1j5y_A 20 QERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAY 59 (79)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999998699776999999979799999999999
No 152
>>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A (A:69-133)
Probab=40.53 E-value=26 Score=16.05 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHC--CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999999748--957999972179997899999984
Q gi|254781217|r 7 TKERIDNILASFSG--GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 7 t~el~d~Ic~~Ia~--G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.......|++.|.+ .-+|..+|+..||+.++|.+.+++
T Consensus 9 ~~~~i~~~~~~i~~~~~itl~~lA~~~~~S~~~l~r~Fk~ 48 (65)
T 1u8b_A 9 RLDKITHACRLLEQETPVTLEALADQVAXSPFHLHRLFKA 48 (65)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHH
T ss_conf 7899999999972369999999954719998999999999
No 153
>>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} (A:)
Probab=40.31 E-value=27 Score=16.03 Aligned_cols=60 Identities=8% Similarity=-0.067 Sum_probs=38.8
Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH--CHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997-48957999972179997899999984--819-99999999999979999999
Q gi|254781217|r 8 KERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ--DRE-DLEKRYEQAKQSHMEHLSEN 67 (162)
Q Consensus 8 ~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k--d~e-ef~e~Y~~Ar~~~ad~ladE 67 (162)
..+...|-... ..|.|...++...|++..|+.+|..- .+. +.-.+++.+-....+.++..
T Consensus 10 ~~~~~~lk~~r~~~glsq~~lA~~~gvs~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~l~~~ 73 (82)
T 3clc_A 10 SKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEM 73 (82)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCCCBHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf 9999999999998499999996155747989999976999999999999999969899999741
No 154
>>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus} (A:1-60)
Probab=40.27 E-value=12 Score=18.25 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=22.4
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 8957999972179997899999984
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.|.|++.||+.-|++..|||++...
T Consensus 33 ~~~s~~~Ia~~agvs~~t~Y~~F~s 57 (60)
T 3ljl_A 33 DKXSYTTLSQQTGVSRTGISHHFPK 57 (60)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 2077999999868886089888849
No 155
>>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A (A:24-107)
Probab=40.21 E-value=24 Score=16.35 Aligned_cols=38 Identities=8% Similarity=0.176 Sum_probs=28.0
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHH---HHHHHHHCHHHHH
Q ss_conf 9999974895799997217999789---9999984819999
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVS---FHGWVKQDREDLE 50 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~T---v~~Wl~kd~eef~ 50 (162)
.|...|..|+|-+.|.+..|++..| +-+.|+....+++
T Consensus 27 ~Va~~L~~g~syreI~~~tGaS~ATIsRvsr~L~~g~~gy~ 67 (84)
T 3frw_A 27 EVAKXLTDKRTYLDISEKTGASTATISRVNRSLNYGNDGYE 67 (84)
T ss_dssp HHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 99999886999999999969875758999999874895799
No 156
>>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} (A:)
Probab=39.57 E-value=19 Score=16.93 Aligned_cols=30 Identities=7% Similarity=0.084 Sum_probs=26.2
Q ss_pred HHHHCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 997489579999721799978999999848
Q gi|254781217|r 16 ASFSGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 16 ~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
-+...|.|...++...|++.+|+.+|.+..
T Consensus 18 ~R~~~gltq~~lA~~~gis~~~is~~e~g~ 47 (76)
T 3bs3_A 18 VLAEKQRTNRWLAEQXGKSENTISRWCSNK 47 (76)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 999959989999766462258888885021
No 157
>>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} (A:1-95)
Probab=39.50 E-value=21 Score=16.74 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=24.6
Q ss_pred HHCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 7489579999721799978999999848
Q gi|254781217|r 18 FSGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 18 Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
+..|.+|..|++..|++...+.+|...+
T Consensus 12 V~~GDTL~~Ia~~~gv~~~~l~~~~~~~ 39 (95)
T 2gu1_A 12 VKVGDTLSGIFAQLGVPYSILQKILSVD 39 (95)
T ss_dssp CCTTCCHHHHHHHTTCCHHHHHHHHHHG
T ss_pred ECCCCCHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 8999849999988598999999999736
No 158
>>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} (A:)
Probab=39.19 E-value=26 Score=16.12 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHC-CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999999748-957999972179997899999984
Q gi|254781217|r 7 TKERIDNILASFSG-GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 7 t~el~d~Ic~~Ia~-G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+...--.|+..|+. +.+...|++..|++.+|+.+.++.
T Consensus 24 s~~~Rl~Il~~L~~~~~~~~ela~~l~is~stvs~HL~~ 62 (106)
T 1r1u_A 24 GDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKL 62 (106)
T ss_dssp CSHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 899999999999839946999998876586689999999
No 159
>>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A (A:)
Probab=39.08 E-value=28 Score=15.90 Aligned_cols=65 Identities=9% Similarity=0.023 Sum_probs=44.2
Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH--CH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997-48957999972179997899999984--81-99999999999997999999999865
Q gi|254781217|r 8 KERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ--DR-EDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 8 ~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k--d~-eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
..+.+.|=... ..|.|...+++..|++.+|+.+|.+. .+ -+.-.+++++...-.+.|+..--+..
T Consensus 27 ~~ig~~l~~~R~~~g~tq~elA~~~gis~~~is~~e~g~~~ps~~~l~~ia~~l~v~~~~l~~~~~~~~ 95 (117)
T 3f52_A 27 EALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGSM 95 (117)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 999999999999959899999988603077899997530327699999999998988999976033100
No 160
>>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} (A:)
Probab=38.66 E-value=28 Score=15.86 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=35.0
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
Q ss_conf 999997489579999721799978999999848--19999999999999799
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQD--REDLEKRYEQAKQSHME 62 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd--~eef~e~Y~~Ar~~~ad 62 (162)
.-..++..|.|...+++..|++.+++.+|.+-. ...+..-+.-|+..++.
T Consensus 19 ~~i~r~r~g~tq~~LA~~~gis~~~is~ie~G~~~~ps~~~l~~ia~~l~vs 70 (86)
T 2ofy_A 19 ELLRSARGDXSXVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLS 70 (86)
T ss_dssp HHHHHHHTTSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999808999999997078999999982986668999999999998969
No 161
>>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} (A:)
Probab=38.53 E-value=25 Score=16.17 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=28.5
Q ss_pred HHCCHHHHHHHHHHHHC---CH--HHHHHHHCCCCCHHHHHHHH
Q ss_conf 24299999999999748---95--79999721799978999999
Q gi|254781217|r 4 HKYTKERIDNILASFSG---GL--SLSQSCKKHGVTVVSFHGWV 42 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia~---G~--SLr~Ick~~gmp~~Tv~~Wl 42 (162)
+-.+.++...||+.|.+ |. +...|.+..|+|...+-+-|
T Consensus 9 l~~s~d~e~kIl~~L~~~~~g~~~tA~~LAk~lg~~Kk~vN~~L 52 (77)
T 1qgp_A 9 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp THHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf 76685889999999996589876029999999698888889999
No 162
>>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold; 1.75A {Escherichia coli} (A:1-112)
Probab=38.42 E-value=20 Score=16.90 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=27.7
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999748957999972179997899999984
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.++..|+.-.|+++.|+..||+.+++++.+.+
T Consensus 26 ~~~~~v~~~gS~t~AA~~l~is~~avs~~i~~ 57 (112)
T 1b9m_A 26 SLLKHIALSGSISQGAKDAGISYKSAWDAINE 57 (112)
T ss_dssp HHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999699999999979899999999999
No 163
>>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} (A:)
Probab=38.33 E-value=28 Score=15.83 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=36.2
Q ss_pred HHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999974-895799997217999789999998481999999999999979999999998652
Q gi|254781217|r 14 ILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162)
Q Consensus 14 Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162)
++..-+ .|.|++.||+.-|++..|||+... +.+++ +....+...+.+.+.+..+.+
T Consensus 30 l~~~~G~~~~ti~~IA~~agvs~~tiY~~F~-sKe~L---~~~~~~~~~~~~~~~~~~~~~ 86 (212)
T 1pb6_A 30 TFSQFGFHGTRLEQIAELAGVSKTNLLYYFP-SKEAL---YIAVLRQILDIWLAPLKAFRE 86 (212)
T ss_dssp HHHHHCTTTCCHHHHHHHTTSCHHHHHHHSS-SHHHH---HHHHHHHHHHHHTHHHHHCCT
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHHHCC
T ss_conf 9998591518899999997949888978778-99999---998789999999999997505
No 164
>>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} (A:)
Probab=38.26 E-value=16 Score=17.48 Aligned_cols=57 Identities=11% Similarity=-0.052 Sum_probs=37.8
Q ss_pred HHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHCHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 999999997-489579999721799978999999848199--999999999997999999
Q gi|254781217|r 10 RIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQDRED--LEKRYEQAKQSHMEHLSE 66 (162)
Q Consensus 10 l~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~ee--f~e~Y~~Ar~~~ad~lad 66 (162)
+.+.|-... ..|.|...++...|++.+|+.+|.+..... .-.+++.+.....+.+++
T Consensus 4 ig~rlk~~r~~~g~sq~~lA~~~gis~~~is~~e~g~~~~~~~l~~ia~~l~v~~~~l~~ 63 (71)
T 1zug_A 4 LSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQY 63 (71)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCSTHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 999999999984999999999971589999999879999999999999995988999838
No 165
>>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, structural genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} (A:85-175)
Probab=38.05 E-value=29 Score=15.80 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=29.6
Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHHCH--HHHHHHHHHHHHHH
Q ss_conf 974895799997217999789999998481--99999999999997
Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQDR--EDLEKRYEQAKQSH 60 (162)
Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~--eef~e~Y~~Ar~~~ 60 (162)
.|++-..|..|+...|++...|...+..+. ..+.+....|++.|
T Consensus 44 ~i~~~~~l~~~a~~~Gld~~~~~~~l~s~~~~~~v~~~~~~A~~~g 89 (91)
T 2in3_A 44 DVAQLAILKKLAVDLGIPESRFTPVFQSDEAKQRTLAGFQRVAQWG 89 (91)
T ss_dssp CTTSHHHHHHHHHHTTCCHHHHHHHHHSHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 3450588888776312121036663058999999998499999859
No 166
>>1adr_A P22 C2 repressor; transcription regulation; NMR {Bacteriophage P22} (A:)
Probab=37.81 E-value=28 Score=15.90 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=34.4
Q ss_pred HHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHHHHHHHHHHHH
Q ss_conf 9999999997-4895799997217999789999998481-99999999999997
Q gi|254781217|r 9 ERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLEKRYEQAKQSH 60 (162)
Q Consensus 9 el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~e~Y~~Ar~~~ 60 (162)
.+.+.|-... ..|.|...+++..|++..|+.+|.+... ..+..-+.-|+..+
T Consensus 5 ~~~~rlk~~r~~~g~t~~ela~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~~~ 58 (76)
T 1adr_A 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQ 58 (76)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 999999999999399999999996979989999987998999999999999969
No 167
>>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} (A:)
Probab=37.62 E-value=29 Score=15.76 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=33.2
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 895799997217999789999998481999999999999979999999998652
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162)
.|.|++.||+.-|++..|||+.... .+++- ........+.+.+.+..+.+
T Consensus 43 ~~~ti~~Ia~~agvs~~tlY~yF~s-Ke~L~---~~~~~~~~~~~~~~~~~~~~ 92 (216)
T 1t56_A 43 ADISVDDLAKGAGISRPTFYFYFPS-KEAVL---LTLLDRVVNQADMALQTLAE 92 (216)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSS-HHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHCCCCC-HHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 4077999999968586666035898-78999---99999999999999999873
No 168
>>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* (B:)
Probab=37.58 E-value=25 Score=16.19 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=33.0
Q ss_pred HHHHHHHHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHHC-HHHHHHHHHHHHHH
Q ss_conf 999999999-97489579999721799978999999848-19999999999999
Q gi|254781217|r 8 KERIDNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQD-REDLEKRYEQAKQS 59 (162)
Q Consensus 8 ~el~d~Ic~-~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd-~eef~e~Y~~Ar~~ 59 (162)
..+...|=. +...|.|...++...|++.+|+.+|.+-. ...+..-+.-|...
T Consensus 11 ~~i~~~lk~~R~~~g~sq~elA~~~gis~~~is~~e~G~~~p~~~~l~~la~~l 64 (88)
T 2wiu_B 11 TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSL 64 (88)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 999999999999859999999786399899999998799999999999999996
No 169
>>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} (A:)
Probab=37.50 E-value=29 Score=15.78 Aligned_cols=49 Identities=6% Similarity=-0.048 Sum_probs=35.4
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHC--H-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 489579999721799978999999848--1-999999999999979999999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQD--R-EDLEKRYEQAKQSHMEHLSEN 67 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd--~-eef~e~Y~~Ar~~~ad~ladE 67 (162)
..|.|...+++..|++..|+.+|.+-. + -+.-.+++++...-.+.|+++
T Consensus 25 ~~glt~~~la~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~v~~~~ll~~ 76 (83)
T 3f6w_A 25 AAGITQKELAARLGRPQSFVSKTENAERRLDVIEFXDFCRGIGTDPYALLSK 76 (83)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 8299999999885389999999987998999999999999939989999865
No 170
>>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} (A:1-76)
Probab=37.26 E-value=30 Score=15.72 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999974895799997217999789999998
Q gi|254781217|r 9 ERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 9 el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
|.+..|-..+..|.|...|++..|++.++|.+.++
T Consensus 40 e~a~~~~~l~~~g~s~~~iA~~lg~s~~~V~~~l~ 74 (76)
T 1r71_A 40 EIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (76)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999998389899999998889999999999
No 171
>>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A (A:1-70)
Probab=37.12 E-value=30 Score=15.70 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=36.1
Q ss_pred HHHHHHH-HHHCCH-HHHHHHHCCCCCHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999-974895-79999721799978999999848--19999999999999799999
Q gi|254781217|r 10 RIDNILA-SFSGGL-SLSQSCKKHGVTVVSFHGWVKQD--REDLEKRYEQAKQSHMEHLS 65 (162)
Q Consensus 10 l~d~Ic~-~Ia~G~-SLr~Ick~~gmp~~Tv~~Wl~kd--~eef~e~Y~~Ar~~~ad~la 65 (162)
+.+.|.. +...|. |...+++..|++.+|+.+|.+.. |.+.-.+++.+.....+.|+
T Consensus 7 ~~~ri~~~r~~~g~~tq~~lA~~lgis~~~is~~e~g~~~p~~~l~~ia~~l~v~~~~ll 66 (70)
T 2fjr_A 7 NVDVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISYDFAAHCALETGANLQWLL 66 (70)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHHSSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 899999999980987699999997969999999982898666899999998598901110
No 172
>>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} (3:)
Probab=36.99 E-value=14 Score=17.96 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=36.1
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4895799997217999789999998481---999999999999979999999998
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDR---EDLEKRYEQAKQSHMEHLSENLAS 70 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~---eef~e~Y~~Ar~~~ad~ladEile 70 (162)
..|.|...++...|++.+++.+|.+-.. -+.-.+++.+.....+.++...-+
T Consensus 28 ~~g~sq~elA~~~gis~~~i~~~E~G~~~p~~~~l~~la~~l~v~~~~l~~~~~~ 82 (92)
T 1lmb_3 28 ELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAR 82 (92)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9299999999888878857999975999999999999999989699999678999
No 173
>>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3} (A:)
Probab=36.49 E-value=30 Score=15.64 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=27.1
Q ss_pred HHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 99997-48957999972179997899999984819999
Q gi|254781217|r 14 ILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 14 Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
++.+- -.|.|++.||+.-|++..|||+.... .+++-
T Consensus 14 lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~~-Ke~L~ 50 (209)
T 3bqy_A 14 LLNESGLDTLTXRRLAQAXDVQAGALYRYFAA-KQDLL 50 (209)
T ss_dssp HHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSS-HHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH
T ss_conf 99973966353999999879099799998799-99999
No 174
>>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} (A:1-62)
Probab=36.34 E-value=31 Score=15.63 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=31.4
Q ss_pred HCCHHHHHHHHHHHHC-CHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 4299999999999748-95799997217999789999998481999
Q gi|254781217|r 5 KYTKERIDNILASFSG-GLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia~-G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
+-..++.-.|+.+|+. |. +.++...|++.+|+.||...+-+.|
T Consensus 9 ~~Ar~ies~iL~rLa~~gq--~~vAe~iGvd~StiSR~K~~~~e~~ 52 (62)
T 1zs4_A 9 NEALRIESALLNKIAMLGT--EKTAEAVGVDKSQISRWKRDWIPKF 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHCH--HHHHHHHTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC--HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 7999999999999999720--4689983998999989987068899
No 175
>>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406} (A:)
Probab=36.07 E-value=31 Score=15.60 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=32.8
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 48957999972179997899999984819999999999999799999999986520
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEA 74 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~ 74 (162)
-+|.|++.||+.-|++..|||+.... .+++- ...-....+.+.+.+......
T Consensus 29 ~~~~ti~~Ia~~agvs~~t~Y~yF~s-K~~L~---~~~~~~~~~~~~~~~~~~~~~ 80 (204)
T 3eup_A 29 LAGTSLTDLTEATNLTKGSIYGNFEN-KEAVA---IAAFDYNWGHVKSVLTAKVQA 80 (204)
T ss_dssp HHHCCHHHHHHHHTCCHHHHTTTSSS-HHHHH---HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH---HHHHHHHHHHHHHHHHHHHHC
T ss_conf 46288999999979099999776456-47999---999999999999999998743
No 176
>>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, DNA-binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395} (A:)
Probab=35.81 E-value=31 Score=15.57 Aligned_cols=68 Identities=4% Similarity=0.023 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHC
Q ss_conf 999999999997489579999721799978999999848199999999999997999999----99986520
Q gi|254781217|r 7 TKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSE----NLASVVEA 74 (162)
Q Consensus 7 t~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~lad----EileIad~ 74 (162)
...+.+-|-+.+..--++..+|+..||+.++|.+-+++....+.+-..+-|-..|-.++. -+-|||..
T Consensus 171 ~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~G~s~~~~i~~~Rl~~A~~lL~~~~~~i~eIA~~ 242 (276)
T 3gbg_A 171 MEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQ 242 (276)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 999999998573899999999999797999999999994998999999999999999987699999999998
No 177
>>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} (A:)
Probab=35.69 E-value=6.7 Score=19.95 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=25.1
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|.|++.||+.-|++..|||+..... +++-.
T Consensus 49 ~~~t~~~IA~~aGvs~~t~Y~~F~sK-~~L~~ 79 (212)
T 2np3_A 49 DATSLRRIAETAGVDQSLVHHFYGTK-ENLFL 79 (212)
T ss_dssp ----------------------CCC--CHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCH-HHHHH
T ss_conf 40679999999694988999987889-99999
No 178
>>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, transcription regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A (A:205-295)
Probab=35.17 E-value=32 Score=15.51 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=36.4
Q ss_pred HHCCHHHHHHHHHHHHC-CHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHH
Q ss_conf 24299999999999748-95799997217999789999998481999999
Q gi|254781217|r 4 HKYTKERIDNILASFSG-GLSLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia~-G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~ 52 (162)
..+++.+.+-.--|+.. -.||..++.-++++.+++..|+++= ++..+.
T Consensus 38 ~~l~~~l~~~a~lRl~nPe~SL~EL~~l~~iSKSgvnhrlrKl-~~ia~~ 86 (91)
T 3hyi_A 38 ENLPEDLRRVALVRLRNKELSLRELGKKLNLTKSQIYSKLKRI-IKIAER 86 (91)
T ss_dssp GGSCHHHHHHHHHHHHCTTSCHHHHHHTTTCCHHHHHHHHHHH-HHHHTT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHH-HHHHHH
T ss_conf 4399999999999986877789999446487899998999999-999999
No 179
>>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} (A:)
Probab=35.10 E-value=23 Score=16.42 Aligned_cols=60 Identities=12% Similarity=-0.011 Sum_probs=36.8
Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHCH-H--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997-4895799997217999789999998481-9--99999999999979999999
Q gi|254781217|r 8 KERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQDR-E--DLEKRYEQAKQSHMEHLSEN 67 (162)
Q Consensus 8 ~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-e--ef~e~Y~~Ar~~~ad~ladE 67 (162)
..+.+.|-... ..|.|...++...|++.+++.+|.+-.. . +.-.+++.+.....+.++++
T Consensus 11 ~~~~~~l~~~R~~~glsq~~lA~~~gis~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~l~~~ 74 (80)
T 3kz3_A 11 RRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPS 74 (80)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCHH
T ss_conf 9999999999999599899999878804979999888999999999999999989399998848
No 180
>>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} (A:1-77)
Probab=34.48 E-value=33 Score=15.43 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=30.4
Q ss_pred HCCHHHHHHHHHHHHCC-----H---HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 42999999999997489-----5---799997217999789999998
Q gi|254781217|r 5 KYTKERIDNILASFSGG-----L---SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia~G-----~---SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
.....+++.|.++|.+| . |.+.+|...|++..|+.+=+.
T Consensus 7 ~~~~~i~~~l~~~I~~g~~~~G~~lps~~~La~~~~vSr~tvr~al~ 53 (77)
T 1hw1_A 7 SPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQ 53 (77)
T ss_dssp SHHHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999999859999819890699999997929999999999
No 181
>>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} (A:)
Probab=33.85 E-value=26 Score=16.14 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=28.4
Q ss_pred HHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 9999999974----89579999721799978999999848199999
Q gi|254781217|r 10 RIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 10 l~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
+.+.-.+.+. .|.|++.||+.-|++..|||+.... .+++-.
T Consensus 18 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~~F~~-K~~L~~ 62 (195)
T 2iu5_A 18 IAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQN-QEELLS 62 (195)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSS-HHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCCC-HHHHHH
T ss_conf 999999999876974078999999859684333012799-999999
No 182
>>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor} (A:1-88)
Probab=33.83 E-value=33 Score=15.43 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=24.5
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 4895799997217999789999998481999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
-.|.|++.||+.-||+..+||+... +.+++
T Consensus 43 ~~~~t~~~Ia~~agvs~~~iY~~F~-~K~~L 72 (88)
T 3fiw_A 43 LDGVSTRRLAKRLGVEQPSLYWYFR-TKRDL 72 (88)
T ss_dssp GGGCCHHHHHHHHTSCTHHHHTTCS-SHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH
T ss_conf 3536599999998938869999889-99999
No 183
>>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} (A:1-73)
Probab=32.53 E-value=35 Score=15.23 Aligned_cols=38 Identities=11% Similarity=-0.039 Sum_probs=30.5
Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 99999999997-489579999721799978999999848
Q gi|254781217|r 8 KERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 8 ~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
..+...|-... ..|.|.+.++...|++.+|+.+|.+-.
T Consensus 11 ~~i~~~ik~lr~~~~lsq~elA~~lgis~~~i~~~e~G~ 49 (73)
T 3ivp_A 11 RALGLAIKEARKKQGLTREQVGAXIEIDPRYLTNIENKG 49 (73)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 999999999999839999999765398974999896246
No 184
>>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} (A:1-50)
Probab=32.35 E-value=31 Score=15.61 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.4
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 48957999972179997899999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGW 41 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~W 41 (162)
-.+.|++.||..-|++..+||+.
T Consensus 26 ~~~~t~~~Ia~~agisk~~~y~~ 48 (50)
T 2g7s_A 26 YNSFSYADISQVVGIRNASIHHH 48 (50)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 25288999999869099999576
No 185
>>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} (A:28-122)
Probab=32.33 E-value=35 Score=15.21 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=26.3
Q ss_pred HHHHHHHHC--CHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999748--95799997217999789999998
Q gi|254781217|r 12 DNILASFSG--GLSLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 12 d~Ic~~Ia~--G~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
-.|+..|+. |.+...|++..|++.+|+.+.++
T Consensus 18 ~~Il~~L~~~~~~~v~eL~~~l~is~s~vs~HL~ 51 (95)
T 1u2w_A 18 AKITYALCQDEELCVCDIANILGVTIANASHHLR 51 (95)
T ss_dssp HHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999887990699999888457007999999
No 186
>>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} (A:54-129)
Probab=31.99 E-value=36 Score=15.17 Aligned_cols=46 Identities=7% Similarity=0.080 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHCC-HHHHHHHHCCCCC-HHHHHHHHHH----CHHHHHHHH
Q ss_conf 99999999997489-5799997217999-7899999984----819999999
Q gi|254781217|r 8 KERIDNILASFSGG-LSLSQSCKKHGVT-VVSFHGWVKQ----DREDLEKRY 53 (162)
Q Consensus 8 ~el~d~Ic~~Ia~G-~SLr~Ick~~gmp-~~Tv~~Wl~k----d~eef~e~Y 53 (162)
.-..+.++..|..| .|+..|+-..|.. .+.|.++.++ -|.+|+.++
T Consensus 9 ~~Rl~~a~~lL~~~~~~i~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~~~r~~~ 60 (76)
T 1bl0_A 9 SRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDVPPHKYRMTN 60 (76)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHHHHTCS
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 7889999988630378887872336999899999999999891999999755
No 187
>>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406} (A:)
Probab=31.82 E-value=36 Score=15.15 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8957999972179997899999984819999999999999799999999986520
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEA 74 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~ 74 (162)
.|.|++.||+.-|++..|||+.... .+++ +...-....+.+.+.+....+.
T Consensus 30 ~~~ti~~IA~~agvs~~tiY~yF~s-K~~L---~~~~~~~~~~~~~~~~~~~~~~ 80 (216)
T 3f0c_A 30 CKTTXNEIASDVGXGKASLYYYFPD-KETL---FEAVIKKEQNVFFDEXDKILNS 80 (216)
T ss_dssp SSCCHHHHHHHHTCCHHHHHHHCSS-HHHH---HHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCC-HHHH---HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4078999999879198789777599-9999---9999999999999999999846
No 188
>>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} (A:1-67)
Probab=31.53 E-value=36 Score=15.12 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=25.7
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|.|++.||+.-|++..+||+..... +++-.
T Consensus 22 ~~~t~~~Ia~~~gvs~~~~y~~F~~K-~~L~~ 52 (67)
T 2vke_A 22 DGLTTRKLAQKLGIEQPTLYWHVKNK-RALLD 52 (67)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCCC-HHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH
T ss_conf 34178999999989097699888899-99999
No 189
>>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1} (A:)
Probab=30.84 E-value=37 Score=15.05 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=24.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 8957999972179997899999984819999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
.|.|++.||+.-|++..|||+.... .+++-
T Consensus 29 ~~~si~~Ia~~agvs~~t~Y~~F~s-K~~L~ 58 (196)
T 3col_A 29 AGVSTTKVAKRVGIAQSNVYLYFKN-KQALI 58 (196)
T ss_dssp GGCCHHHHHHHHTSCHHHHHTTCSS-HHHHH
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCC-HHHHH
T ss_conf 5288999999868996703105899-99999
No 190
>>2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} (A:)
Probab=30.77 E-value=38 Score=15.04 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=28.5
Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999997-48957999972179997899999984
Q gi|254781217|r 8 KERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
..+...|=... ..|.|...+++..|++.+++.+|.+-
T Consensus 17 ~~i~~~lk~~r~~~gltq~elA~~~Gis~~~is~~e~G 54 (83)
T 2a6c_A 17 SQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLXRG 54 (83)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCC
T ss_conf 99999999999996998899999985576355588624
No 191
>>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A (A:1-82)
Probab=30.64 E-value=38 Score=15.03 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=26.9
Q ss_pred HHHHHHHHC-CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999748-957999972179997899999984
Q gi|254781217|r 12 DNILASFSG-GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 12 d~Ic~~Ia~-G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-.|+..|++ +.+...|++..|++.+|+.+.++.
T Consensus 28 ~~Il~~L~~~~~~~~ela~~l~is~~tvs~HL~~ 61 (82)
T 2kko_A 28 LQILDLLAQGERAVEAIATATGMNLTTASANLQA 61 (82)
T ss_dssp HHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999819978999999989099999999999
No 192
>>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=30.52 E-value=23 Score=16.41 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.2
Q ss_pred HHCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 74895799997217999789999998
Q gi|254781217|r 18 FSGGLSLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 18 Ia~G~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
+..|.+|.+|++.+|+++..+.+|=.
T Consensus 20 V~~GDTL~~IA~~y~v~~~~l~~~N~ 45 (77)
T 2djp_A 20 LEPGDTLAGLALKYGVTMEQIKRANR 45 (77)
T ss_dssp CCTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999999999998656999998547
No 193
>>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Streptomyces coelicolor} (A:)
Probab=30.15 E-value=38 Score=14.97 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=25.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|.|++.||+.-|++..|||+.... .+++-.
T Consensus 59 ~~~ti~~Ia~~agvs~~tiY~~F~s-Ke~L~~ 89 (225)
T 2id3_A 59 DALDLGEIARRAGVGKTTVYRRWGT-PGGLAA 89 (225)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHCS-HHHHHH
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCC-HHHHHH
T ss_conf 4077999999818996641357899-999999
No 194
>>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} (A:1-55)
Probab=29.98 E-value=39 Score=14.95 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=28.8
Q ss_pred HHHHHHHHHHH-C-CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999974-8-957999972179997899999984
Q gi|254781217|r 9 ERIDNILASFS-G-GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 9 el~d~Ic~~Ia-~-G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
++--+|+..|. + ..|...|.+..|+|.+|+++.+.+
T Consensus 5 ~~D~~IL~~L~~~~r~s~~eia~~lgis~~tv~~ri~r 42 (55)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQ 42 (55)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89999999999848999999999988588899999998
No 195
>>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} (A:1-79)
Probab=29.14 E-value=40 Score=14.86 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999999974-8957999972179997899999984
Q gi|254781217|r 8 KERIDNILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
...--.|+..|. .+.+...|+...|++.+|+...+..
T Consensus 20 ~~~R~~Il~~L~~~~~~~~ela~~l~is~~tvS~HL~~ 57 (79)
T 2oqg_A 20 DETRWEILTELGRADQSASSLATRLPVSRQAIAKHLNA 57 (79)
T ss_dssp CHHHHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999649987447798868998899999989
No 196
>>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} (A:)
Probab=28.99 E-value=36 Score=15.17 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=35.1
Q ss_pred HHHHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHH--HHHHHHHHHHHHHHHHH
Q ss_conf 99999-974895799997217999789999998481999--99999999997999999
Q gi|254781217|r 12 DNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDL--EKRYEQAKQSHMEHLSE 66 (162)
Q Consensus 12 d~Ic~-~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef--~e~Y~~Ar~~~ad~lad 66 (162)
+.|-. +...|.|...++...|++.+|+.+|.+-..+.+ -.+++.+...-.+.|++
T Consensus 4 ~~lk~~R~~~gltq~~la~~~gvs~~~i~~~E~g~~ps~~~l~~ia~~l~v~~~~l~~ 61 (69)
T 1r69_A 4 SRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLN 61 (69)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTTHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHC
T ss_conf 9999999994999999978509899999999879997999999999996988999828
No 197
>>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} (A:1-54)
Probab=28.52 E-value=41 Score=14.79 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=28.9
Q ss_pred HHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 9999999997-489579999721799978999999848
Q gi|254781217|r 9 ERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 9 el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
.+.-+|+..- -+|.+-..|++..|+++.++.+.|.+.
T Consensus 8 ~~~~~va~lYY~~gltQ~eIA~~lgiSR~~VsRlL~~A 45 (54)
T 2w48_A 8 RLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRG 45 (54)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999998349999999998698999999999999
No 198
>>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A (A:)
Probab=28.49 E-value=41 Score=14.79 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|.|++.||+.-|++..|||+.... .+++-.
T Consensus 33 ~~~ti~~Ia~~aGvs~~tiY~~F~s-Ke~L~~ 63 (220)
T 3lhq_A 33 SATSLAEIANAAGVTRGAIYWHFKN-KSDLFS 63 (220)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSS-HHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHCCC-HHHHHH
T ss_conf 4077999999858893347761899-999999
No 199
>>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} (A:1-58)
Probab=28.44 E-value=41 Score=14.78 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.2
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf 48957999972179997899999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGW 41 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~W 41 (162)
-.|.|++.||+.-|++..+||+.
T Consensus 34 ~~~~ti~~Ia~~agvs~~~lY~h 56 (58)
T 2oi8_A 34 ASALSLNAIAKRXGXSGPALYRY 56 (58)
T ss_dssp TTSCCHHHHHHHTTCCHHHHHTT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 45388999999968872048675
No 200
>>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170} (A:)
Probab=28.33 E-value=41 Score=14.77 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=24.4
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 895799997217999789999998481999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
.|.|++.||+.-|++..|||+.... .+++
T Consensus 36 ~~~t~~~IA~~agvs~~tiY~yF~s-Ke~L 64 (208)
T 3cwr_A 36 AAXTXEGVASEAGIAKKTLYRFASG-RADL 64 (208)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSS-HHHH
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCC-HHHH
T ss_conf 3047999998759987765578999-8999
No 201
>>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* (A:1-90)
Probab=28.12 E-value=42 Score=14.75 Aligned_cols=32 Identities=6% Similarity=0.090 Sum_probs=26.3
Q ss_pred HHHHHHHHC-CHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 999999748-95799997217999789999998
Q gi|254781217|r 12 DNILASFSG-GLSLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 12 d~Ic~~Ia~-G~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
-.|++.|++ +.|+..++...|++...+.++++
T Consensus 28 l~if~~l~~~~~t~~eLa~~~g~~~~~l~rllr 60 (90)
T 3i53_A 28 LRVADHIAAGHRTAAEIASAAGAHADSLDRLLR 60 (90)
T ss_dssp HTHHHHHHTTCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 797889727999999999886929899999999
No 202
>>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12} (A:)
Probab=28.12 E-value=42 Score=14.75 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=37.3
Q ss_pred CCHHHHHHHHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 29999999999-9748957999972179997899999984--819999999999999799999
Q gi|254781217|r 6 YTKERIDNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQ--DREDLEKRYEQAKQSHMEHLS 65 (162)
Q Consensus 6 yt~el~d~Ic~-~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k--d~eef~e~Y~~Ar~~~ad~la 65 (162)
....+.+.|-. +...|.|...++...|++.+|+.+|.+. .|..---+++.+.....+.|+
T Consensus 8 ~~~~~g~~ir~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~~~ia~~l~v~~~~ll 70 (73)
T 3fmy_A 8 AETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPSTIKLLRVLDKHPELLN 70 (73)
T ss_dssp CCCCCHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHHHHHHHHHHHCGGGHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 020699999999998699999999997989999999994998999999999999876928898
No 203
>>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} (A:)
Probab=27.99 E-value=31 Score=15.58 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=27.3
Q ss_pred HHHHHHHHHCC-HHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999997489-57999972179997899999984
Q gi|254781217|r 11 IDNILASFSGG-LSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G-~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-=.|+..|..| .+...|++..|++.+|+.+.++.
T Consensus 23 Rl~IL~~L~~~~~~v~eLa~~l~~s~stvS~HL~~ 57 (118)
T 2jsc_A 23 RCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSC 57 (118)
T ss_dssp HHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999819947999999988566569999999
No 204
>>1d5y_A ROB transcription factor; protein-DNA complex, ROB transcription factor; HET: DNA; 2.70A {Escherichia coli} (A:1-104)
Probab=27.82 E-value=41 Score=14.76 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHH
Q ss_conf 999999999748957999972179997899999984819-99999999999979999
Q gi|254781217|r 9 ERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRE-DLEKRYEQAKQSHMEHL 64 (162)
Q Consensus 9 el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~e-ef~e~Y~~Ar~~~ad~l 64 (162)
.+.+-|.+.+...-++..+++..||+.++|.+-+++.-- .+..-....+...+..+
T Consensus 7 ~~~~~i~~~~~~~~~~~~la~~~~~S~~~l~r~f~~~~g~t~~~~~~~~r~~~~~~~ 63 (104)
T 1d5y_A 7 DLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVA 63 (104)
T ss_dssp HHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999960689999999999989399999999999889199999999999999999
No 205
>>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} (A:)
Probab=27.63 E-value=42 Score=14.69 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999999997-48957999972179997899999984
Q gi|254781217|r 7 TKERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 7 t~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
...+.+.|.... ..|.|...+++..|++.+++.+|.+-
T Consensus 38 ~~~i~~~l~~~R~~~glsq~~lA~~~Gis~s~is~~e~g 76 (120)
T 2o38_A 38 KLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 999999999999986985765667628884776899718
No 206
>>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, structural genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus} (A:80-168)
Probab=27.52 E-value=43 Score=14.68 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=29.5
Q ss_pred HHHHHHHHH-------HHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 999999999-------74895799997217999789999998481999999999
Q gi|254781217|r 9 ERIDNILAS-------FSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQ 55 (162)
Q Consensus 9 el~d~Ic~~-------Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~ 55 (162)
++.+.|+.. |.+-..|..++...|++...|-..+..+ +.+.....
T Consensus 27 ~~~~~lf~a~~~e~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~--~~~~~v~~ 78 (89)
T 3kzq_A 27 QMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDGT--LLEGVFQD 78 (89)
T ss_dssp HHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTSH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCH--HHHHHHHH
T ss_conf 99999999998637584317899999998299999999997198--99999999
No 207
>>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str} (A:)
Probab=27.44 E-value=43 Score=14.67 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=24.4
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 895799997217999789999998481999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
.|.|++.||+.-|++..|||+.... .+++
T Consensus 34 ~~~si~~IA~~agvs~~tiY~~F~s-K~~L 62 (221)
T 3c2b_A 34 KALTTSGLARAANCSKESLYKWFGD-RDGL 62 (221)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHSS-HHHH
T ss_pred CCCCHHHHHHHHCCCCCCHHHHCCC-HHHH
T ss_conf 5178999999858980205266399-6899
No 208
>>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidases, MCSG, PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis MC58} (A:542-721)
Probab=27.02 E-value=43 Score=14.62 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=74.1
Q ss_pred HHCCHHHHHHHHHHHHCCH-HHHHHHHCCCCCH-HHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C
Q ss_conf 2429999999999974895-7999972179997-899999984-81999999999999979999999998652026---3
Q gi|254781217|r 4 HKYTKERIDNILASFSGGL-SLSQSCKKHGVTV-VSFHGWVKQ-DREDLEKRYEQAKQSHMEHLSENLASVVEAPL---T 77 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G~-SLr~Ick~~gmp~-~Tv~~Wl~k-d~eef~e~Y~~Ar~~~ad~ladEileIad~~~---~ 77 (162)
..+.+.+.+.+..-|.++. .-.=++.-..+|+ .++...... |++.........+..=|..+.+++..+..... +
T Consensus 43 ~~l~~~~~~a~~~~L~~~~ld~a~~A~~L~LPs~~~l~~~~~~vDp~~i~~ar~~l~~~ia~~l~~~l~~~y~~~~~~~~ 122 (180)
T 2gtq_A 43 LPKHEKLLAAVEKVISDDLLDNAFKALLLGVPSEAELWDGAENIDPLRYHQAREALLDTLAVHFLPKWHELNRQAAKQEN 122 (180)
T ss_dssp CCCCHHHHHHHHHHHHCSSSCHHHHHHHTCCCCHHHHTTTCSSBCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 66258999999998627331524576434686311013303567889999999999989999999999999999861137
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 242049899999999999999999875644
Q gi|254781217|r 78 EEERDHPQAIKLRELRMKRLQWELEKRYRN 107 (162)
Q Consensus 78 ~~~~~~~~~i~~~rl~id~~kW~asKl~Pk 107 (162)
+....++..+..|+|+=-...|+++-=.|.
T Consensus 123 ~~y~~~~~~~g~RaLkn~~L~yL~~~~~~~ 152 (180)
T 2gtq_A 123 QSYEYSPEAAGWRTLRNVCRAFVLRADPAH 152 (180)
T ss_dssp TCCSCCHHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 766779678888899999999999636656
No 209
>>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} (A:47-107)
Probab=26.10 E-value=45 Score=14.51 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHCC-HHHHHHHHCCCCCH-HHHHHHHHH
Q ss_conf 99999999997489-57999972179997-899999984
Q gi|254781217|r 8 KERIDNILASFSGG-LSLSQSCKKHGVTV-VSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia~G-~SLr~Ick~~gmp~-~Tv~~Wl~k 44 (162)
......++..|.++ .|+..|+...|.+. +.|.+..++
T Consensus 9 ~~Rl~~a~~~L~~~~~~i~~ia~~~Gf~~~s~f~r~Fk~ 47 (61)
T 2k9s_A 9 DQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKK 47 (61)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 899999999886557519999999689989999999999
No 210
>>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} (A:1-46)
Probab=26.01 E-value=45 Score=14.50 Aligned_cols=37 Identities=8% Similarity=0.171 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHC-CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999999748-957999972179997899999984
Q gi|254781217|r 8 KERIDNILASFSG-GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia~-G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.++.+-|-+.+++ .-||..+|...||+.+.|.+-.++
T Consensus 6 ~~~~~yI~~h~~~~~lsl~~lA~~~~~S~~yl~r~Fk~ 43 (46)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (46)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999756899979999999989299999999999
No 211
>>3gn5_A HTH-type transcriptional regulator MQSA (YGIT/B3021); Zn-binding protein, HTH-XRE DNA binding motif, DNA-binding, transcription regulation; HET: MEQ; 2.15A {Escherichia coli k-12} PDB: 3gn5_B* (A:72-133)
Probab=25.81 E-value=46 Score=14.48 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=32.8
Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 974895799997217999789999998481--9999999999999799999
Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQDR--EDLEKRYEQAKQSHMEHLS 65 (162)
Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~--eef~e~Y~~Ar~~~ad~la 65 (162)
|...|.|...+....|++.+|+.+|-+-.. ..---+++.+.....+.++
T Consensus 9 R~~~gltq~~lA~~~gis~~~is~~E~g~~~p~~~~~~la~~l~v~~~~l~ 59 (62)
T 3gn5_A 9 RKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVLDKHPELLN 59 (62)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHTTCCCCCHHHHHHHHHHHHCGGGHH
T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHH
T ss_conf 998499999999880999999999986998899999999999765840588
No 212
>>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} (A:)
Probab=25.24 E-value=47 Score=14.41 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=29.3
Q ss_pred HHHHHHHHHHH--HCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999997--48957999972179997899999984
Q gi|254781217|r 8 KERIDNILASF--SGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~I--a~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
..+++-|.+.. ....|++.|++.-|++.+|+.|.+++
T Consensus 24 ~~ia~yil~n~~~~~~~si~eiA~~~~vS~sTI~Rf~kk 62 (111)
T 2o3f_A 24 RKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp HHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999995924765557999999979899999999999
No 213
>>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} (A:1-58)
Probab=24.88 E-value=47 Score=14.37 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHC--CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999999748--957999972179997899999984
Q gi|254781217|r 8 KERIDNILASFSG--GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia~--G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.++-..|+..|.. -.|.+.+.+..|+|.+|+++.+.+
T Consensus 8 d~~D~~Il~~L~~~~r~s~~ela~~lgis~~tv~~ri~~ 46 (58)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDK 46 (58)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 099999999998859999999999989699999999999
No 214
>>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} (A:10-99)
Probab=24.87 E-value=48 Score=14.37 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHC--CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999999748--957999972179997899999984
Q gi|254781217|r 8 KERIDNILASFSG--GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia~--G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
...--.|+..|++ |.+...|++..|++++|+.+.+..
T Consensus 14 ~~~R~~Il~~L~~~~~~~~~ela~~l~is~~tvs~HL~~ 52 (90)
T 3cuo_A 14 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLAR 52 (90)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999997699941999999989298789999999
No 215
>>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str} (A:1-60)
Probab=24.85 E-value=48 Score=14.36 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=20.2
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 579999721799978999999848
Q gi|254781217|r 22 LSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 22 ~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
.++..+|+..|+|.+|+..|-...
T Consensus 3 ~~I~e~a~~~gvs~~tlR~ye~~g 26 (60)
T 3gp4_A 3 LNIKEASEKSGVSADTIRYYERIG 26 (60)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 139999999895999999999836
No 216
>>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis} (A:)
Probab=24.79 E-value=48 Score=14.36 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=20.5
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 579999721799978999999848
Q gi|254781217|r 22 LSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 22 ~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
.++..+|.-.|++.+|+|+|.+.+
T Consensus 17 ltv~Eaa~ylgis~~~ly~l~~~~ 40 (70)
T 1y6u_A 17 LTIEEASKYFRIGENKLRRLAEEN 40 (70)
T ss_dssp EEHHHHHHHTCSCHHHHHHHHHHC
T ss_pred ECHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 579999999550499999999858
No 217
>>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} (A:)
Probab=24.27 E-value=49 Score=14.29 Aligned_cols=53 Identities=25% Similarity=0.209 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHH-HCCHHHHHHHHCCCC--CHHHHHHHHHHCH-HHHHHHHHHHHH
Q ss_conf 2999999999997-489579999721799--9789999998481-999999999999
Q gi|254781217|r 6 YTKERIDNILASF-SGGLSLSQSCKKHGV--TVVSFHGWVKQDR-EDLEKRYEQAKQ 58 (162)
Q Consensus 6 yt~el~d~Ic~~I-a~G~SLr~Ick~~gm--p~~Tv~~Wl~kd~-eef~e~Y~~Ar~ 58 (162)
+...+.+.|-... ..|.|...+++..|+ +.+++.+|.+-.. ..+..-+.-|..
T Consensus 5 ~~~~ig~~ik~~R~~~gltq~~lA~~~G~~vs~~~is~~E~g~~~p~~~~l~~ia~~ 61 (71)
T 2ewt_A 5 YAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADF 61 (71)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999999999998626389999997787389999999970010078899999999
No 218
>>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A* (A:)
Probab=24.10 E-value=49 Score=14.27 Aligned_cols=40 Identities=5% Similarity=0.035 Sum_probs=32.3
Q ss_pred HHCCHHHHHHHHHHHHCCH-------HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 2429999999999974895-------799997217999789999998
Q gi|254781217|r 4 HKYTKERIDNILASFSGGL-------SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G~-------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
......+.+.|.+.|.+|. |-+.+|...|++..||..=+.
T Consensus 19 ~~~~~~i~~~L~~~I~~G~l~pG~~Lpe~~La~~~gVSR~tVReAl~ 65 (226)
T 3dbw_A 19 DLVRTKVYNLLKEXILNHELKLGEKLNVRELSEKLGISFTPVRDALL 65 (226)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCTTCBCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 22999999999999984999980977999999998919999999999
No 219
>>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida} (A:1-68)
Probab=24.02 E-value=49 Score=14.26 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=24.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|-|++.||+.-|++..|||+... +.+++-.
T Consensus 23 ~~~t~~~Ia~~~gvs~~~~y~~F~-~k~~L~~ 53 (68)
T 2vpr_A 23 EGLTTRKLAQKIGVEQPTLYWHVK-NKRALLD 53 (68)
T ss_dssp HHCCHHHHHHHHTCCHHHHTTTCC-SHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC-CHHHHHH
T ss_conf 517899999997919879988889-9898999
No 220
>>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (F:504-613)
Probab=23.88 E-value=42 Score=14.75 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=28.3
Q ss_pred HHCCHHHHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 2429999999999974----8957999972179997899999984
Q gi|254781217|r 4 HKYTKERIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.++++..-.-|.-+.. .|.|...||...|++..|+...+.+
T Consensus 46 ~~L~~~~r~ii~l~~~~~~~e~~t~~eIA~~lgis~~~V~~~~~r 90 (110)
T 3iyd_F 46 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK 90 (110)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHH
T ss_pred HCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 489999999999981899999824999999979599999999999
No 221
>>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} (A:16-135)
Probab=23.77 E-value=50 Score=14.23 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=25.4
Q ss_pred HHHHHHHHHHCCH---HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999974895---7999972179997899999984
Q gi|254781217|r 10 RIDNILASFSGGL---SLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 10 l~d~Ic~~Ia~G~---SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+...++.....|. |...||+..||+..|+.+.+..
T Consensus 22 vl~~l~~~~~~g~~~pS~~~iA~~~g~s~~tV~~~l~~ 59 (120)
T 2v79_A 22 LLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRM 59 (120)
T ss_dssp HHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999876999989999999969899999999999
No 222
>>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} (A:1-74)
Probab=23.35 E-value=49 Score=14.25 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 579999721799978999999848
Q gi|254781217|r 22 LSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 22 ~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
.++..+|+..|++.+|+..|-...
T Consensus 1 lti~e~a~~~gvs~~tLR~ye~~g 24 (74)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEKG 24 (74)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 978999999891999999999878
No 223
>>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4} (A:)
Probab=23.19 E-value=51 Score=14.16 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=30.4
Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHHHHHHHHHHHHH
Q ss_conf 974895799997217999789999998481-999999999999979
Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLEKRYEQAKQSHM 61 (162)
Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~e~Y~~Ar~~~a 61 (162)
|...|.|...+|...|++.+|+.+|.+-.. +....-..-|...++
T Consensus 10 R~~~gltq~eLA~~~gis~~~is~~E~G~~~ps~~~l~~la~~l~v 55 (158)
T 2p5t_A 10 RKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNV 55 (158)
T ss_dssp ----------------------------------------------
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 9984999999999979699999999869989999999999999499
No 224
>>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} (A:1-88)
Probab=22.93 E-value=52 Score=14.12 Aligned_cols=32 Identities=6% Similarity=0.056 Sum_probs=28.1
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999748957999972179997899999984
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.++-.++...|++...+..+++.+++.+.++.
T Consensus 7 ~~f~~v~~~gs~t~AA~~L~it~~avs~~i~~ 38 (88)
T 1ixc_A 7 KYFIAVAEAGNXAAAAKRLHVSQPPITRQXQA 38 (88)
T ss_dssp HHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999998099999999988888999999999
No 225
>>2h1n_A Oligoendopeptidase F; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG, PSI; 3.00A {Geobacillus stearothermophilus} PDB: 2h1j_A (A:477-567)
Probab=22.82 E-value=52 Score=14.11 Aligned_cols=42 Identities=12% Similarity=0.061 Sum_probs=35.8
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 899999984819999999999999799999999986520263
Q gi|254781217|r 36 VSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAPLT 77 (162)
Q Consensus 36 ~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~~~ 77 (162)
..+|....+|+++|.++|..-...+.-.-..|++..+.-.++
T Consensus 25 l~l~~~~~~~~~~~~~~Y~~~L~~ggs~~~~e~~k~~Gid~~ 66 (91)
T 2h1n_A 25 FQFWKRAQEDRASAWRDYVALCRLGGSRPFTELVKSANLQSP 66 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHTTCCCT
T ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
T ss_conf 999999997789999999999628699989999988699999
No 226
>>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} (A:1-53)
Probab=22.74 E-value=52 Score=14.10 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=34.3
Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 4299999999999748957999972179997899999984
Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-+|.+-.-+|....-.|.|++.|++..+-+.-.+...++.
T Consensus 6 ~Lt~~E~~~I~~~~~~g~s~~eIArki~RS~~vi~nylk~ 45 (53)
T 1u78_A 6 ALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKD 45 (53)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7999999999999997999999999989589999999997
No 227
>>2ezh_A Transposase; DNA-binding protein, transposition; NMR {Enterobacteria phage MU} (A:)
Probab=22.48 E-value=53 Score=14.07 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=25.6
Q ss_pred HCCHHHHHHHHHHHH--CCHH-------HHHHHHCCCC--C-HHHHHHHHHHCHH
Q ss_conf 429999999999974--8957-------9999721799--9-7899999984819
Q gi|254781217|r 5 KYTKERIDNILASFS--GGLS-------LSQSCKKHGV--T-VVSFHGWVKQDRE 47 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia--~G~S-------Lr~Ick~~gm--p-~~Tv~~Wl~kd~e 47 (162)
++++++.+-|-+.-- ..-| +...|+..|+ | +.||++++.+=++
T Consensus 7 ~l~~~v~~~I~~~yL~~~~ps~~~~~~~i~~~c~~~gl~~PS~~Tv~rri~~i~~ 61 (75)
T 2ezh_A 7 EFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQLDE 61 (75)
T ss_dssp CCCHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCH
T ss_conf 1999999999999827348989999999999999819899999999999994899
No 228
>>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:1-64)
Probab=21.93 E-value=54 Score=14.00 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHC--CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999999748--957999972179997899999984
Q gi|254781217|r 8 KERIDNILASFSG--GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia~--G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.+.-..|++.|.. -.|...+|...|++..|+++-+.+
T Consensus 4 ~eR~~~Il~~L~~~~~is~~ela~~l~vS~~Ti~rdi~~ 42 (64)
T 1bia_A 4 NTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQT 42 (64)
T ss_dssp CHHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 640899999985699468999999979899999999999
No 229
>>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} (A:)
Probab=21.92 E-value=50 Score=14.20 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHCCHHHHHHHHCCCCC
Q ss_conf 9999999999974895799997217999
Q gi|254781217|r 7 TKERIDNILASFSGGLSLSQSCKKHGVT 34 (162)
Q Consensus 7 t~el~d~Ic~~Ia~G~SLr~Ick~~gmp 34 (162)
+++.++++..+|.+|++...+.+.+...
T Consensus 14 ~~~~A~~~~~~l~~g~~F~~lA~~yS~d 41 (93)
T 1zk6_A 14 DKKTAEEVEKKLKKGEKFEDLAKEYSTD 41 (93)
T ss_dssp SHHHHHHHHHHHHHTCCHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 9899999999998699999999773438
No 230
>>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} (A:1-76)
Probab=21.78 E-value=54 Score=13.98 Aligned_cols=37 Identities=8% Similarity=-0.085 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999999999974895--------799997217999789999998
Q gi|254781217|r 7 TKERIDNILASFSGGL--------SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 7 t~el~d~Ic~~Ia~G~--------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
...+++.|-+.|..|. |.+.+|+..|++..|+..=+.
T Consensus 11 ~~~i~~~i~~~I~~g~~~~g~~lpse~~La~~~~vSr~tvr~al~ 55 (76)
T 3edp_A 11 FEVIASKIKDSINRDEYKTGXLXPNETALQEIYSSSRTTIRRAVD 55 (76)
T ss_dssp HHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999849999929992899999997949999999999
No 231
>>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} (A:)
Probab=21.73 E-value=55 Score=13.97 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=25.5
Q ss_pred HHHHHHHCCH-HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999974895-7999972179997899999984
Q gi|254781217|r 13 NILASFSGGL-SLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 13 ~Ic~~Ia~G~-SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.+...|..|. |+...|+.++++..-|..|...
T Consensus 40 aVV~aV~~Gl~t~~EA~rrY~Ls~eEf~~W~~a 72 (95)
T 2jrt_A 40 AVVKAVIHGLITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp HHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999828477999998849999999999999
No 232
>>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:1-53)
Probab=21.37 E-value=55 Score=13.92 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHC--CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999999748--957999972179997899999984
Q gi|254781217|r 9 ERIDNILASFSG--GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 9 el~d~Ic~~Ia~--G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
++--+|+..|.. ..|.+.|.+..|++..|+++.+.+
T Consensus 3 ~~D~~IL~~L~~d~r~~~~elA~~lgvS~~tv~~ri~~ 40 (53)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKK 40 (53)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89999999999859999999999989199999999999
No 233
>>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579} (A:1-74)
Probab=21.13 E-value=56 Score=13.89 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.1
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 9579999721799978999999848
Q gi|254781217|r 21 GLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 21 G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
-.|+..+|+..|++..|+..|-...
T Consensus 4 ~yti~eva~~~gvs~~tlR~ye~~g 28 (74)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYYDKIN 28 (74)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 7749999999894989999999878
No 234
>>2uxu_A HTH-type transcriptional regulator TTGR; repressor protein, transcription regulation, multidrug binding protein; HET: NAR; 2.3A {Pseudomonas putida} PDB: 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A* (A:)
Probab=21.06 E-value=56 Score=13.88 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=27.8
Q ss_pred HHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 999974-89579999721799978999999848199999
Q gi|254781217|r 14 ILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 14 Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
++..-+ .|.|++.||+.-|++..|||+..... +++-.
T Consensus 23 l~~~~G~~~~si~~IA~~agvs~~tiY~~F~sK-e~L~~ 60 (210)
T 2uxu_A 23 AFYKRGVARTTLADIAELAGVTRGAIYWHFNNK-AELVQ 60 (210)
T ss_dssp HHHHHTTTTCCHHHHHHHHTCCHHHHHHHCSSS-HHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCH-HHHHH
T ss_conf 999859352889999998688954376418999-99999
No 235
>>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} (A:1-91)
Probab=21.02 E-value=56 Score=13.88 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHCC-------HHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 2999999999997489-------5799997217999789999998
Q gi|254781217|r 6 YTKERIDNILASFSGG-------LSLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 6 yt~el~d~Ic~~Ia~G-------~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
....+++.|.+.|..| .+.+.+|+..|++..|+..=+.
T Consensus 27 ~~~~i~~~l~~~I~~g~l~~G~~l~e~~La~~~gvSr~tvr~Al~ 71 (91)
T 3c7j_A 27 ARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRXPVREALR 71 (91)
T ss_dssp HHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 899999999999982999991963899999998869549999999
No 236
>>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} (A:1-94)
Probab=21.02 E-value=56 Score=13.88 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=26.0
Q ss_pred HCCHHHHHHHHHHHHCCH-------HHHHHHHCCCCCHHHHHHHH
Q ss_conf 429999999999974895-------79999721799978999999
Q gi|254781217|r 5 KYTKERIDNILASFSGGL-------SLSQSCKKHGVTVVSFHGWV 42 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia~G~-------SLr~Ick~~gmp~~Tv~~Wl 42 (162)
.....+.+.|-++|.+|. +-+.+|+..|++..|+..=+
T Consensus 28 ~l~~~i~~~l~~~I~~g~l~~G~~l~e~~La~~~~vSr~tvR~al 72 (94)
T 2hs5_A 28 SRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAF 72 (94)
T ss_dssp HHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 899999999999998299999098699999999795999999999
No 237
>>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor} (A:31-230)
Probab=20.86 E-value=57 Score=13.85 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=35.7
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999974-895799997217999789999998481999999999999979999999998652
Q gi|254781217|r 12 DNILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162)
Q Consensus 12 d~Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162)
-.++..-+ .|.|++.||+.-|++..|||+.... .+++ +........+.+.+.+.+..+
T Consensus 10 ~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~~-K~~L---~~~~~~~~~~~~~~~~~~~~~ 68 (200)
T 2iai_A 10 VQVFIERGYDGTSXEHLSKAAGISKSSIYHHVTG-KEEL---LRRAVSRALDELFGILDEEHA 68 (200)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSS-HHHH---HHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCC-HHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999985936260999999869387667660799-9999---999999999999999999987
No 238
>>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01} (A:1-88)
Probab=20.50 E-value=47 Score=14.40 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=28.1
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999748957999972179997899999984
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.++-.++.-.|++.+.+..+++.+++.+.++.
T Consensus 10 ~~f~~v~~~gs~s~AA~~L~isq~avs~~i~~ 41 (88)
T 3fzv_A 10 KYFVTTVECGSVAEASRKLYIAQPSISTAVKG 41 (88)
T ss_dssp HHHHHHHHSSSHHHHHHHHTCCC-CHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999998099999999988788899999999
No 239
>>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A (A:1-56)
Probab=20.42 E-value=58 Score=13.79 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=29.7
Q ss_pred HHHHHHHHHHH--CCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999974--8957999972179997899999984
Q gi|254781217|r 9 ERIDNILASFS--GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 9 el~d~Ic~~Ia--~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
++--+|+..|. ...|...|.+..|++.+|+++.+.+
T Consensus 7 ~~D~~Il~~Lq~~~r~~~~elA~~lg~S~~tv~~Ri~~ 44 (56)
T 2w25_A 7 DIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRR 44 (56)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999848999999999989099999999999
No 240
>>1kqf_A FDH-N, formate dehydrogenase, nitrate-inducible, major subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} (A:494-524,A:679-758)
Probab=20.24 E-value=59 Score=13.77 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=39.6
Q ss_pred HHHHHHHHHCHHHHCCHHHHHHHCC-----HHHHHHHHHHHHHHHHCCCCEEECCCCH
Q ss_conf 9999998756444011123344210-----2599999999976420176301114501
Q gi|254781217|r 96 RLQWELEKRYRNVYGNHVSVEQKHT-----IDLKPLMDRVQHSIQSKGLKPVKALDKQ 148 (162)
Q Consensus 96 ~~kW~asKl~Pk~YGdKv~vE~~~t-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (162)
..|++.|=|- -.|||+.+.|.+-. .+.-|-.++|.+.|-|..|.-+.++++.
T Consensus 8 ~pkf~vSllK-a~~Gd~AT~eNdfgtWdY~~~~~pd~~~VakEiNGy~l~dv~~~~~~ 64 (111)
T 1kqf_A 8 YPKFFVSLMK-SFYGDAAQKENNWGSWNYKQPHEPQSDEVAKENNGYALEDLYDANGV 64 (111)
T ss_dssp HHHHHHHHHH-HHHGGGCCGGGGGGCCCCSSTTSCCHHHHHHHHHCEESSCEECTTSC
T ss_pred CCHHHHHHHH-HHCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCC
T ss_conf 5203577776-53131234554148357788555668999987048650011311220
No 241
>>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus dk 1622} (A:)
Probab=20.17 E-value=59 Score=13.76 Aligned_cols=25 Identities=12% Similarity=0.414 Sum_probs=21.2
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 9579999721799978999999848
Q gi|254781217|r 21 GLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 21 G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
-.++..+|+..|+|..|+..|-...
T Consensus 5 ~~ti~eva~~~gvs~~tLR~ye~~g 29 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERRY 29 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHHT
T ss_pred EEEHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 3669999999885822588898817
Done!