Query gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 162 No_of_seqs 111 out of 119 Neff 5.2 Searched_HMMs 13730 Date Wed Jun 1 11:46:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781217.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1ijwc_ a.4.1.2 (C:) HIN recom 96.9 0.0003 2.2E-08 46.1 3.3 42 3-44 3-44 (47) 2 d2jn6a1 a.4.1.19 (A:1-89) Unch 96.5 0.0012 8.6E-08 42.1 4.1 45 1-45 1-47 (89) 3 d1pdnc_ a.4.1.5 (C:) Paired pr 94.6 0.018 1.3E-06 34.3 4.1 42 5-46 16-57 (123) 4 d1k78a1 a.4.1.5 (A:19-81) Pax- 94.0 0.029 2.1E-06 33.0 4.1 41 5-45 14-54 (63) 5 d1hlva1 a.4.1.7 (A:1-66) DNA-b 92.6 0.099 7.2E-06 29.5 5.1 49 5-54 7-57 (66) 6 d1v7ba1 a.4.1.9 (A:1-74) Trans 86.8 0.69 5.1E-05 23.9 5.5 53 19-75 22-74 (74) 7 d1ui5a1 a.4.1.9 (A:5-75) A-fac 84.4 0.69 5E-05 23.9 4.5 34 19-53 23-56 (71) 8 d2gfna1 a.4.1.9 (A:4-80) Proba 82.8 1.6 0.00011 21.6 6.3 51 19-73 24-74 (77) 9 d2id6a1 a.4.1.9 (A:1-75) Trans 82.4 1.6 0.00012 21.5 6.6 59 8-70 6-68 (75) 10 d1t56a1 a.4.1.9 (A:22-94) Ethr 82.4 1.6 0.00012 21.5 6.8 44 10-54 8-55 (73) 11 d1sgma1 a.4.1.9 (A:5-77) Putat 82.2 1.5 0.00011 21.7 5.5 44 11-54 12-55 (73) 12 d1gdta1 a.4.1.2 (A:141-183) ga 82.0 0.64 4.7E-05 24.1 3.6 35 11-45 8-42 (43) 13 d2hkua1 a.4.1.9 (A:18-87) Puta 77.7 2.3 0.00017 20.5 6.5 38 12-50 11-48 (70) 14 d1jt6a1 a.4.1.9 (A:2-72) Multi 75.6 2.6 0.00019 20.1 6.2 37 14-51 14-50 (71) 15 d3c07a1 a.4.1.9 (A:15-89) Puta 74.7 2.3 0.00017 20.4 4.6 32 20-52 24-55 (75) 16 d1yioa1 a.4.6.2 (A:131-200) Re 73.4 1.4 0.0001 21.9 3.2 34 11-44 17-50 (70) 17 d1rkta1 a.4.1.9 (A:2-82) Hypot 72.8 3 0.00022 19.7 5.4 50 20-73 30-79 (81) 18 d1l3la1 a.4.6.2 (A:170-234) Qu 72.1 1.6 0.00011 21.6 3.2 38 6-44 5-42 (65) 19 d1a04a1 a.4.6.2 (A:150-216) Ni 71.1 1.8 0.00013 21.2 3.3 39 5-44 6-44 (67) 20 d2gena1 a.4.1.9 (A:6-75) Proba 70.4 3.4 0.00025 19.3 7.1 40 12-52 11-50 (70) 21 d1fsea_ a.4.6.2 (A:) Germinati 69.7 1.9 0.00014 21.1 3.2 34 11-44 9-42 (67) 22 d2o7ta1 a.4.1.9 (A:1-78) Trans 69.5 3.6 0.00026 19.2 6.1 31 20-51 26-56 (78) 23 d2g7sa1 a.4.1.9 (A:3-76) Putat 68.6 3.7 0.00027 19.1 5.9 39 11-50 14-52 (74) 24 d1zk8a1 a.4.1.9 (A:6-77) Trans 66.5 3.6 0.00026 19.2 4.1 57 12-72 14-70 (72) 25 d1pb6a1 a.4.1.9 (A:14-85) Hypo 66.0 4.2 0.0003 18.7 5.0 30 19-49 22-51 (72) 26 d2fd5a1 a.4.1.9 (A:1-76) Proba 66.0 2.2 0.00016 20.6 2.9 37 13-50 19-55 (76) 27 d2fq4a1 a.4.1.9 (A:9-77) Trans 65.8 3 0.00022 19.7 3.6 36 12-48 15-50 (69) 28 d1umqa_ a.4.1.12 (A:) Photosyn 65.5 3 0.00022 19.7 3.6 34 12-45 23-57 (60) 29 d1vi0a1 a.4.1.9 (A:6-77) Hypot 64.2 4.5 0.00033 18.5 6.1 55 14-72 14-68 (72) 30 d2ao9a1 a.4.1.17 (A:13-132) Ph 63.9 4.6 0.00033 18.5 4.9 31 22-54 37-67 (120) 31 d2i10a1 a.4.1.9 (A:10-78) Puta 63.9 4.6 0.00033 18.5 5.0 36 13-49 11-47 (69) 32 d1rp3a2 a.4.13.2 (A:164-234) S 63.0 4.7 0.00035 18.4 5.3 48 4-51 20-67 (71) 33 d2np5a1 a.4.1.9 (A:9-77) Trans 62.9 4.8 0.00035 18.4 4.4 54 11-68 11-64 (69) 34 d1or7a1 a.4.13.2 (A:120-187) S 62.4 4.9 0.00035 18.3 5.0 48 4-51 17-64 (68) 35 d1mkma1 a.4.5.33 (A:1-75) Tran 62.2 4.9 0.00036 18.3 4.8 36 9-44 5-43 (75) 36 d2fbqa1 a.4.1.9 (A:2-80) Trans 62.2 4.9 0.00036 18.3 6.3 49 20-72 23-71 (79) 37 d2hyja1 a.4.1.9 (A:8-82) Putat 60.2 5.3 0.00039 18.1 4.6 55 12-70 16-70 (75) 38 d1v4ra1 a.4.5.6 (A:1-100) Tran 59.3 3.9 0.00028 19.0 3.2 37 7-43 11-55 (100) 39 d2oi8a1 a.4.1.9 (A:8-86) Putat 59.2 5.5 0.0004 17.9 6.3 47 19-69 27-73 (79) 40 d2g3ba1 a.4.1.9 (A:2-73) Putat 58.3 5.7 0.00042 17.9 5.0 31 19-50 20-50 (72) 41 d2g7ga1 a.4.1.9 (A:9-73) Putat 58.1 3.7 0.00027 19.1 3.0 33 11-44 10-42 (65) 42 d1t33a1 a.4.1.9 (A:1-88) Putat 57.5 5.9 0.00043 17.8 6.8 28 20-49 31-58 (88) 43 d1p4wa_ a.4.6.2 (A:) Transcrip 57.5 3.4 0.00025 19.3 2.7 54 6-60 23-81 (87) 44 d3bwga1 a.4.5.6 (A:5-82) Trans 56.8 6 0.00044 17.7 4.0 35 9-43 2-44 (78) 45 d1jhga_ a.4.12.1 (A:) Trp repr 55.9 6.2 0.00045 17.6 4.5 39 13-51 49-91 (101) 46 d2d6ya1 a.4.1.9 (A:7-74) Putat 55.2 6.4 0.00047 17.5 5.0 36 14-50 15-50 (68) 47 d1g2ha_ a.4.1.12 (A:) Transcri 53.0 5.5 0.0004 18.0 3.1 38 5-45 20-57 (61) 48 d2vkva1 a.4.1.9 (A:6-67) Tetra 51.6 7.3 0.00053 17.2 3.7 38 12-50 10-47 (62) 49 d1hw1a1 a.4.5.6 (A:5-78) Fatty 48.1 7.8 0.00057 17.0 3.3 35 9-43 7-49 (74) 50 d2np3a1 a.4.1.9 (A:35-99) Puta 47.3 3.5 0.00026 19.2 1.4 52 16-72 11-62 (65) 51 d1biaa1 a.4.5.1 (A:1-63) Bioti 47.0 8.6 0.00062 16.7 3.9 36 9-44 5-42 (63) 52 d2id3a1 a.4.1.9 (A:13-80) Puta 46.6 8.7 0.00063 16.7 4.4 36 13-49 18-53 (68) 53 d1rr7a_ a.4.1.14 (A:) Middle o 46.1 7.2 0.00052 17.2 2.8 30 13-43 59-88 (94) 54 d2ezla_ a.4.1.2 (A:) Ibeta sub 45.1 9.1 0.00067 16.5 4.4 34 11-44 39-76 (99) 55 d2hs5a1 a.4.5.6 (A:25-93) Puta 44.6 8.6 0.00063 16.7 3.1 37 7-43 4-47 (69) 56 d1bl0a1 a.4.1.8 (A:9-62) MarA 44.5 6.8 0.0005 17.3 2.5 36 9-44 7-42 (54) 57 d2b5aa1 a.35.1.3 (A:1-77) Regu 44.5 9.3 0.00068 16.4 3.4 61 7-67 8-72 (77) 58 d1xsva_ a.4.13.3 (A:) Hypothet 44.5 9.3 0.00068 16.4 5.2 49 6-55 19-67 (106) 59 d2oa4a1 a.4.12.3 (A:1-93) Unch 43.4 9.7 0.00071 16.3 4.7 35 10-44 39-73 (93) 60 d1etxa_ a.4.1.12 (A:) FIS prot 42.9 9.9 0.00072 16.3 3.4 25 20-44 61-85 (89) 61 d1bl0a2 a.4.1.8 (A:63-124) Mar 41.9 10 0.00074 16.2 3.5 34 11-44 3-38 (62) 62 d2g7la1 a.4.1.9 (A:16-83) Puta 40.9 8.6 0.00062 16.7 2.6 34 16-50 19-52 (68) 63 d1z0xa1 a.4.1.9 (A:4-71) Trans 40.4 4.1 0.0003 18.8 0.9 40 10-50 7-51 (68) 64 d2iu5a1 a.4.1.9 (A:1-71) Trans 40.1 4.6 0.00034 18.5 1.1 32 19-51 24-55 (71) 65 d2fx0a1 a.4.1.9 (A:4-76) Hemol 37.6 12 0.00086 15.8 3.6 36 14-50 17-52 (73) 66 d1j5ya1 a.4.5.1 (A:3-67) Putat 36.4 12 0.0009 15.6 3.4 37 8-44 6-45 (65) 67 d1utxa_ a.35.1.3 (A:) Putative 34.1 11 0.00077 16.1 2.2 28 17-44 10-37 (66) 68 d2auwa1 a.35.1.10 (A:88-154) H 33.2 11 0.00081 15.9 2.2 28 17-44 10-37 (67) 69 d1r69a_ a.35.1.2 (A:) 434 C1 r 33.0 9.5 0.00069 16.4 1.8 28 17-44 10-37 (63) 70 d1y7ya1 a.35.1.3 (A:5-73) Rest 32.4 12 0.00088 15.7 2.2 50 9-58 9-60 (69) 71 d2croa_ a.35.1.2 (A:) cro 434 31.6 9.7 0.00071 16.3 1.6 55 10-64 4-61 (65) 72 d1b0na2 a.35.1.3 (A:1-68) SinR 31.1 13 0.00095 15.5 2.2 49 17-65 10-62 (68) 73 d2cfxa1 a.4.5.32 (A:1-63) Tran 30.9 15 0.0011 15.0 3.4 35 10-44 6-42 (63) 74 d1nera_ a.35.1.2 (A:) Ner {Bac 30.7 15 0.0011 15.0 3.6 32 13-44 13-45 (74) 75 d1y9qa1 a.35.1.8 (A:4-82) Prob 29.1 14 0.001 15.2 2.1 54 8-61 7-62 (79) 76 d1e0ga_ d.7.1.1 (A:) Membrane- 28.3 11 0.00077 16.1 1.4 25 18-42 7-31 (48) 77 d1b9ma1 a.4.5.8 (A:-1-126) N-t 28.2 15 0.0011 15.1 2.1 32 13-44 24-55 (127) 78 d1s7oa_ a.4.13.3 (A:) Hypothet 27.9 17 0.0012 14.7 8.1 46 6-51 17-62 (106) 79 d2r1jl1 a.35.1.2 (L:3-68) P22 26.8 13 0.00094 15.5 1.6 35 10-44 4-39 (66) 80 d2esna1 a.4.5.37 (A:3-91) Prob 25.9 17 0.0013 14.7 2.1 39 5-44 5-43 (89) 81 d1x57a1 a.35.1.12 (A:8-85) End 25.0 18 0.0013 14.5 2.1 55 6-60 3-59 (78) 82 d2o38a1 a.35.1.13 (A:28-116) H 24.0 20 0.0015 14.3 3.6 37 8-44 10-47 (89) 83 d1ntca_ a.4.1.12 (A:) DNA-bind 23.4 18 0.0013 14.6 1.8 25 20-44 63-87 (91) 84 d1d5ya1 a.4.1.8 (A:3-56) Rob t 22.4 22 0.0016 14.1 2.3 35 10-44 8-42 (54) 85 d1r71a_ a.4.14.1 (A:) Transcri 22.3 22 0.0016 14.0 5.1 49 9-57 18-68 (114) 86 d1i1ga1 a.4.5.32 (A:2-61) LprA 21.7 22 0.0016 14.0 3.4 33 12-44 6-40 (60) 87 d2icta1 a.35.1.3 (A:8-94) Anti 21.4 22 0.0016 13.9 3.0 48 19-66 12-62 (87) 88 d2ppxa1 a.35.1.3 (A:30-91) Unc 20.6 23 0.0017 13.8 4.8 29 16-44 7-35 (62) 89 d2coba1 a.4.1.15 (A:8-70) Liga 20.2 24 0.0017 13.8 4.2 39 4-42 5-44 (63) 90 d2o3fa1 a.4.1.20 (A:1-83) Puta 20.2 24 0.0017 13.8 3.3 36 9-44 22-59 (83) No 1 >d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Probab=96.90 E-value=0.0003 Score=46.08 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=39.1 Q ss_pred CHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 124299999999999748957999972179997899999984 Q gi|254781217|r 3 AHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 3 ~~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) -+++|++.++.+-.++++|.|...||+..|++..|+|+|+-. T Consensus 3 ~~~lt~~q~~~a~~l~~~G~s~~~iA~~~gVSr~TiYry~pa 44 (47) T d1ijwc_ 3 PRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (47) T ss_dssp CCSSCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHSCS T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCC T ss_conf 885999999999999988997999999979699999855775 No 2 >d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Probab=96.52 E-value=0.0012 Score=42.13 Aligned_cols=45 Identities=24% Similarity=0.464 Sum_probs=39.7 Q ss_pred CCCHHCCHHHHHHHHHHHH--CCHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 9712429999999999974--89579999721799978999999848 Q gi|254781217|r 1 MYAHKYTKERIDNILASFS--GGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162) Q Consensus 1 m~~~Kyt~el~d~Ic~~Ia--~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162) |.-.+||+|+=.++..... .|.|++.||++.|++.+|+++|+++. T Consensus 1 M~rk~Ys~EfK~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k~~ 47 (89) T d2jn6a1 1 MPTKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (89) T ss_dssp CCCCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 94798999999999999998299859999999798988999999998 No 3 >d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=94.57 E-value=0.018 Score=34.25 Aligned_cols=42 Identities=7% Similarity=0.011 Sum_probs=38.6 Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCH Q ss_conf 429999999999974895799997217999789999998481 Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDR 46 (162) Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~ 46 (162) -|+.++-..|++.+.+|.|.+.||+..+++.+|+++|+.+.. T Consensus 16 pLs~dlR~rIv~~~~~G~s~r~iA~~~~VS~~tV~k~l~r~~ 57 (123) T d1pdnc_ 16 PLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQ 57 (123) T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 798999999999998048999999998969999999999987 No 4 >d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]} Probab=93.99 E-value=0.029 Score=32.95 Aligned_cols=41 Identities=7% Similarity=-0.016 Sum_probs=37.9 Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 42999999999997489579999721799978999999848 Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162) Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162) =|+-++-..|++.+..|.|-++|++..+++.+|+.+|+.+. T Consensus 14 Pls~DLR~Riv~~~~~G~s~r~aA~rf~VS~s~v~k~l~r~ 54 (63) T d1k78a1 14 PLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 54 (63) T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 59999999999999959989999999597799999999999 No 5 >d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]} Probab=92.61 E-value=0.099 Score=29.46 Aligned_cols=49 Identities=6% Similarity=0.106 Sum_probs=37.4 Q ss_pred HCCHHHHHHHHHHHHCCH--HHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH Q ss_conf 429999999999974895--79999721799978999999848199999999 Q gi|254781217|r 5 KYTKERIDNILASFSGGL--SLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE 54 (162) Q Consensus 5 Kyt~el~d~Ic~~Ia~G~--SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~ 54 (162) .+|-+.=-+||.++..|. +-+.||+.+|+|.+||..|+.. .+.....+. T Consensus 7 ~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKn-K~kil~~~~ 57 (66) T d1hlva1 7 QLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN-KRAILASER 57 (66) T ss_dssp CCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT-HHHHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHH T ss_conf 377999999999998087210999999959976479999987-999998899 No 6 >d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]} Probab=86.78 E-value=0.69 Score=23.88 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=38.6 Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 489579999721799978999999848199999999999997999999999865202 Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAP 75 (162) Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~ 75 (162) -.|-|++.||+.-|++..|||+... +.+++ +..+-+...+.+.+.+.+++.+| T Consensus 22 ~~~~s~~~Ia~~agvs~~t~Y~~F~-~K~~L---~~~~~~~~~~~~~~~l~~~~~dP 74 (74) T d1v7ba1 22 LETLSYDSLAEATGLSKSGLIYHFP-SRHAL---LLGMHELLADDWDKELRDITRDP 74 (74) T ss_dssp STTCCHHHHHHHHCSCHHHHHHHCS-SHHHH---HHHHHHHHHHHHHHHHHHHCSST T ss_pred CCCCCHHHHHHHHCCCCCHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHHHHCCC T ss_conf 5635799999884969223855079-99999---99999999999999998874798 No 7 >d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]} Probab=84.44 E-value=0.69 Score=23.89 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=27.0 Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHH Q ss_conf 48957999972179997899999984819999999 Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRY 53 (162) Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y 53 (162) -+|.|++.||+.-|++..|||++... .+++-... T Consensus 23 ~~~~si~~Ia~~agvs~~~~y~~F~s-K~~L~~~~ 56 (71) T d1ui5a1 23 YESTTLSEIVAHAGVTKGALYFHFAA-KEDLAHAI 56 (71) T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSS-HHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHHHH T ss_conf 46267999999879487699989829-99999999 No 8 >d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=82.76 E-value=1.6 Score=21.56 Aligned_cols=51 Identities=8% Similarity=0.156 Sum_probs=33.3 Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4895799997217999789999998481999999999999979999999998652 Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162) Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162) -.|.|++.||+.-|++..|||+.... .+++-. .+-....+.+.+.+-++.+ T Consensus 24 ~~~~s~~~Ia~~agvs~~~lY~~F~~-K~~L~~---~~~~~~~~~~~~~~~~~~~ 74 (77) T d2gfna1 24 ISAVTTRAVAEESGWSTGVLNHYFGS-RHELLL---AALRRAGDIQGDRYRTILD 74 (77) T ss_dssp GGGCCHHHHHHHHSSCHHHHHHHTSS-HHHHHH---HHHHHHHHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHH---HHHHHHHHHHHHHHHHHHC T ss_conf 04057999999878887799888839-999999---9999999999999999983 No 9 >d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]} Probab=82.44 E-value=1.6 Score=21.48 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=36.5 Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999974----895799997217999789999998481999999999999979999999998 Q gi|254781217|r 8 KERIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLAS 70 (162) Q Consensus 8 ~el~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEile 70 (162) ..+.+.-++.+. .|.|++.||+.-|++..|||+... +.+++-.. +.....+.+.+.+.+ T Consensus 6 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~-~k~~Ll~~---~~~~~~~~~~~~~~~ 68 (75) T d2id6a1 6 DAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFK-NKEELYYQ---AYMSVTEKLQKEFEN 68 (75) T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHS-SHHHHHHH---HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHHHH---HHHHHHHHHHHHHHH T ss_conf 9999999999998393516799999884998889988887-99999999---999999999999999 No 10 >d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]} Probab=82.37 E-value=1.6 Score=21.47 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=30.6 Q ss_pred HHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH Q ss_conf 9999999974----89579999721799978999999848199999999 Q gi|254781217|r 10 RIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE 54 (162) Q Consensus 10 l~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~ 54 (162) +.+.-++.+. .|.|++.||+.-|++..|||+... +.+++-.... T Consensus 8 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~-~K~~L~~~~~ 55 (73) T d1t56a1 8 ILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFP-SKEAVLLTLL 55 (73) T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS-SHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHHHHHH T ss_conf 99999999997591507799999986988889988884-9999999999 No 11 >d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]} Probab=82.20 E-value=1.5 Score=21.74 Aligned_cols=44 Identities=16% Similarity=0.041 Sum_probs=30.4 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH Q ss_conf 99999997489579999721799978999999848199999999 Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE 54 (162) Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~ 54 (162) .+-+++.=-.|.|++.||+.-|++..+||+......+++-.... T Consensus 12 ~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~F~~~Ke~L~~~~~ 55 (73) T d1sgma1 12 SRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAV 55 (73) T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHH T ss_conf 99999849241779999998688877999985998999999999 No 12 >d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]} Probab=82.05 E-value=0.64 Score=24.10 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=31.2 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 99999997489579999721799978999999848 Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162) Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162) .++|...-..|.+-++|++..|+.++|||+-|.+. T Consensus 8 ~~~V~~L~~~G~gat~IAk~lgI~R~SVYR~L~~~ 42 (43) T d1gdta1 8 RDAVLNMWQQGLGASHISKTMNIARSTVYKVINES 42 (43) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSC T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHC T ss_conf 99999999948989999999798799999998601 No 13 >d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=77.66 E-value=2.3 Score=20.48 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=29.0 Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH Q ss_conf 999999748957999972179997899999984819999 Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162) Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162) -.++.+-+.|-|++.|++.-|++..|||++... .+++- T Consensus 11 ~~l~~~~G~~~t~~~Ia~~agvs~~~~Y~~F~~-K~~L~ 48 (70) T d2hkua1 11 TELFLEHGEGVPITQICAAAGAHPNQVTYYYGS-KERLF 48 (70) T ss_dssp HHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHSS-HHHHH T ss_pred HHHHHHCCCCCHHHHHHHHHCCCHHHHHHCCCC-HHHHH T ss_conf 999876135744999998878885368730899-99999 No 14 >d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]} Probab=75.63 E-value=2.6 Score=20.12 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=27.8 Q ss_pred HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH Q ss_conf 99997489579999721799978999999848199999 Q gi|254781217|r 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162) Q Consensus 14 Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162) +.+.=-.|.|++.||+.-|++..|||+.... .+++-. T Consensus 14 ~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~~-K~~L~~ 50 (71) T d1jt6a1 14 FIKNGYNATTTGEIVKLSESSKGNLYYHFKT-KENLFL 50 (71) T ss_dssp HHHHCTTTCCHHHHHHHTTCCHHHHHHHHSS-HHHHHH T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHH T ss_conf 9985914067999999878587599888849-999999 No 15 >d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]} Probab=74.65 E-value=2.3 Score=20.43 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=26.1 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHH Q ss_conf 895799997217999789999998481999999 Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52 (162) Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~ 52 (162) .+.|++.||+.-|++..|||+... +.+++-.. T Consensus 24 ~~~t~~~Ia~~agvs~~~~y~~F~-~k~~L~~~ 55 (75) T d3c07a1 24 DRTTMRAIAQEAGVSVGNAYYYFA-GKEHLIQG 55 (75) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCS-SHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC-CHHHHHHH T ss_conf 407799999987939879998985-99999999 No 16 >d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Probab=73.39 E-value=1.4 Score=21.87 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=29.2 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 9999999748957999972179997899999984 Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) --+||..|+.|.|...|+...|++..||...+.. T Consensus 17 E~~vl~~l~~G~s~~eIA~~l~iS~~TV~~~~~~ 50 (70) T d1yioa1 17 EQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHN 50 (70) T ss_dssp HHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999982899999998979799999999999 No 17 >d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]} Probab=72.78 E-value=3 Score=19.67 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=34.6 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 895799997217999789999998481999999999999979999999998652 Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162) Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162) .|.|++.||+.-|++..|||+... +.+++ +..+.+...+.+.+.+.+.++ T Consensus 30 ~~~ti~~Ia~~agvs~~t~Y~~F~-~K~~L---~~~~~~~~~~~~~~~l~~~~e 79 (81) T d1rkta1 30 ELTTMKDVVEESGFSRGGVYLYFS-STEEM---FRRIIETGLDEGLRKLDKSAE 79 (81) T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCS-CHHHH---HHHHHHHHHHHHHHHHHHHTT T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHHHHC T ss_conf 517799999986949889988884-99999---999999999999999999875 No 18 >d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Probab=72.14 E-value=1.6 Score=21.56 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=30.9 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 299999999999748957999972179997899999984 Q gi|254781217|r 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 6 yt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) +|+ .--+|+..++.|.|...|+...+++..|+...+.+ T Consensus 5 Lt~-rE~~vl~l~~~G~s~~eIA~~l~iS~~TV~~~~~~ 42 (65) T d1l3la1 5 LDP-KEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLRE 42 (65) T ss_dssp CCH-HHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCH-HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 489-99999999993698889999978889999999999 No 19 >d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]} Probab=71.08 E-value=1.8 Score=21.21 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=31.6 Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 4299999999999748957999972179997899999984 Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) .+|+.- -+|+..++.|.|...|+...|++..||...+.. T Consensus 6 ~LT~rE-~~vl~ll~~G~s~~eIA~~l~iS~~TV~~~~~~ 44 (67) T d1a04a1 6 QLTPRE-RDILKLIAQGLPNKMIARRLDITESTVKVHVKH 44 (67) T ss_dssp GSCHHH-HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCHHH-HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 279999-999999996799899999978888899999999 No 20 >d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]} Probab=70.41 E-value=3.4 Score=19.33 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=29.1 Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHH Q ss_conf 99999974895799997217999789999998481999999 Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52 (162) Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~ 52 (162) +-+++.=-.|.|++.||+.-|++..|||+.... .+++-.. T Consensus 11 ~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~s-K~~L~~~ 50 (70) T d2gena1 11 ACFSEHGVDATTIEMIRDRSGASIGSLYHHFGN-KERIHGE 50 (70) T ss_dssp HHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCS-HHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHHH T ss_conf 999985924087999999879587799989879-9999999 No 21 >d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]} Probab=69.69 E-value=1.9 Score=21.05 Aligned_cols=34 Identities=0% Similarity=0.007 Sum_probs=29.2 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 9999999748957999972179997899999984 Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) --+|+..++.|.|...|+...|++..|+...+.. T Consensus 9 E~~vl~l~~~G~s~~eIA~~L~is~~TV~~~~~~ 42 (67) T d1fsea_ 9 EREVFELLVQDKTTKEIASELFISEKTVRNHISN 42 (67) T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999983698999999988888899999999 No 22 >d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]} Probab=69.50 E-value=3.6 Score=19.20 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=25.3 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH Q ss_conf 89579999721799978999999848199999 Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162) Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162) .|.|++.||+.-|++..|||+... +.+++-. T Consensus 26 ~~~t~~~Ia~~agvs~~t~y~~F~-sKe~L~~ 56 (78) T d2o7ta1 26 DSLTMENIAEQAGVGVATLYRNFP-DRFTLDM 56 (78) T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCS-SHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC-CHHHHHH T ss_conf 406799999883998879999886-9999999 No 23 >d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]} Probab=68.56 E-value=3.7 Score=19.07 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=28.5 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH Q ss_conf 9999999748957999972179997899999984819999 Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162) Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162) .+-|+++=-.|.|++.||+.-|++..|||+... +.+++- T Consensus 14 ~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~~F~-sK~~L~ 52 (74) T d2g7sa1 14 RTLIIRGGYNSFSYADISQVVGIRNASIHHHFP-SKSDLV 52 (74) T ss_dssp HHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCS-SHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC-CHHHHH T ss_conf 999998591506799999987818416988883-999999 No 24 >d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]} Probab=66.50 E-value=3.6 Score=19.19 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=35.0 Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999997489579999721799978999999848199999999999997999999999865 Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162) Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162) +-+.+.=-.|.|++.||+.-|++..+||+.... .+++-... .....+.+.+.+.+.+ T Consensus 14 ~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF~~-k~~L~~~~---~~~~~~~~~~~l~~a~ 70 (72) T d1zk8a1 14 EIADANGVQEVTLASLAQTLGVRSPSLYNHVKG-LQDVRKNL---GIYGIKKLHNRLEEAA 70 (72) T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSS-HHHHHHHH---HHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHHHH---HHHHHHHHHHHHHHHC T ss_conf 999986977566999999959799999898839-99999999---9999999999999884 No 25 >d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]} Probab=66.03 E-value=4.2 Score=18.75 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=25.0 Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHH Q ss_conf 4895799997217999789999998481999 Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162) Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162) -.|.|++.||+.-|++..|||+... +.+++ T Consensus 22 ~~~~ti~~Ia~~agvs~~t~y~~F~-~K~~l 51 (72) T d1pb6a1 22 FHGTRLEQIAELAGVSKTNLLYYFP-SKEAL 51 (72) T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHSS-SHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH T ss_conf 2506799999986978679998886-99999 No 26 >d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]} Probab=65.95 E-value=2.2 Score=20.59 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=27.8 Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH Q ss_conf 99999748957999972179997899999984819999 Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162) Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162) -+.+.=-.+.|++.||+.-|++..|||+... +.+++- T Consensus 19 l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~-~Ke~L~ 55 (76) T d2fd5a1 19 ALLERGAVEPSVGEVMGAAGLTVGGFYAHFQ-SKDALM 55 (76) T ss_dssp HHHHHTTTSCCHHHHHHHTTCCGGGGGGTCS-CHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCCCCCCHHHCCC-CHHHHH T ss_conf 9998491305699999983899550042089-999999 No 27 >d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]} Probab=65.79 E-value=3 Score=19.72 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=27.4 Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHH Q ss_conf 9999997489579999721799978999999848199 Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRED 48 (162) Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~ee 48 (162) +.+.+.=-+|-|++.||+.-|++..+||+... +.++ T Consensus 15 ~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~-~k~~ 50 (69) T d2fq4a1 15 ELLLESGFKAVTVDKIAERAKVSKATIYKWWP-NKAA 50 (69) T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS-SHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHH T ss_conf 99998392407799999997858879999987-9999 No 28 >d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]} Probab=65.47 E-value=3 Score=19.70 Aligned_cols=34 Identities=6% Similarity=0.192 Sum_probs=28.0 Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 99999974-89579999721799978999999848 Q gi|254781217|r 12 DNILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162) Q Consensus 12 d~Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162) +.|...|. +|-..+..++..||+..|+|+.+.+. T Consensus 23 ~~I~~aL~~~~gn~~~aA~~LGIsR~TL~rkmkky 57 (60) T d1umqa_ 23 EHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKR 57 (60) T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTS T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHC T ss_conf 99999999966859999999898899999999970 No 29 >d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]} Probab=64.23 E-value=4.5 Score=18.53 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=34.5 Q ss_pred HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99997489579999721799978999999848199999999999997999999999865 Q gi|254781217|r 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162) Q Consensus 14 Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162) |.+.=-.|.|++.||+.-|++..|||+... +.+++-. .+.....+.+.+.+.+.. T Consensus 14 ~~~~G~~~~ti~~Ia~~agvs~~~~y~~F~-~K~~L~~---~~~~~~~~~~~~~~~~~~ 68 (72) T d1vi0a1 14 IAENGYHQSQVSKIAKQAGVADGTIYLYFK-NKEDILI---SLFKEKMGQFIERMEEDI 68 (72) T ss_dssp HHHHCGGGCCHHHHHHHHTSCHHHHHHHCS-SHHHHHH---HHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHHH---HHHHHHHHHHHHHHHHHH T ss_conf 998590415599999987949879988883-9999999---999999999999999998 No 30 >d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]} Probab=63.89 E-value=4.6 Score=18.49 Aligned_cols=31 Identities=10% Similarity=0.397 Sum_probs=24.8 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH Q ss_conf 579999721799978999999848199999999 Q gi|254781217|r 22 LSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE 54 (162) Q Consensus 22 ~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~ 54 (162) .+--.|+...||+..|+|+|...| ..|-+ |. T Consensus 37 ktqeqiAeelGisr~tLyrWrt~d-k~FI~-y~ 67 (120) T d2ao9a1 37 RTQDEMANELGINRTTLWEWRTKN-QDFIA-FK 67 (120) T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHC-HHHHH-HH T ss_pred HHHHHHHHHHCHHHHHHHHHHHCC-HHHHH-HH T ss_conf 149999999580188898876066-26999-99 No 31 >d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]} Probab=63.88 E-value=4.6 Score=18.49 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=27.3 Q ss_pred HHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHH Q ss_conf 999997-4895799997217999789999998481999 Q gi|254781217|r 13 NILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162) Q Consensus 13 ~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162) .++..- -.|.|++.||+.-|++..|||+... +.+++ T Consensus 11 ~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~-~K~~L 47 (69) T d2i10a1 11 ELFWRQGYEGTSITDLTKALGINPPSLYAAFG-SKRDL 47 (69) T ss_dssp HHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHC-SHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH T ss_conf 99998790627799999986878629988885-99999 No 32 >d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Probab=62.99 E-value=4.7 Score=18.38 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=37.4 Q ss_pred HHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH Q ss_conf 242999999999997489579999721799978999999848199999 Q gi|254781217|r 4 HKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162) Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162) ..+++..-+-|.-+.-.|.|...|+...|+|..|+...+.+....++. T Consensus 20 ~~L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~ 67 (71) T d1rp3a2 20 SKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLRE 67 (71) T ss_dssp TTSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 779999999999998684899999999798999999999999999998 No 33 >d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]} Probab=62.88 E-value=4.8 Score=18.37 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=34.0 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999748957999972179997899999984819999999999999799999999 Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENL 68 (162) Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEi 68 (162) .+-|.+.=-+|-|++.||+.-|++..+||+... +.+++ +..+.....+.+.+.+ T Consensus 11 ~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F~-sK~~L---~~~~~~~~~~~~~~~~ 64 (69) T d2np5a1 11 FDVAAESGLEGASVREVAKRAGVSIGAVQHHFS-TKDEM---FAFALRTLVDKLLARL 64 (69) T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS-SHHHH---HHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH---HHHHHHHHHHHHHHHH T ss_conf 999998491406799999883988879988883-99999---9999999999999999 No 34 >d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]} Probab=62.37 E-value=4.9 Score=18.31 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=37.8 Q ss_pred HHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH Q ss_conf 242999999999997489579999721799978999999848199999 Q gi|254781217|r 4 HKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162) Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162) ..+++..-+-|.-+.-.|.|...||...|+|..|+..++.+....+++ T Consensus 17 ~~Lp~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l~ra~~~Lr~ 64 (68) T d1or7a1 17 ESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 64 (68) T ss_dssp HHSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 869999999999999909899999999894999999999999999997 No 35 >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=62.23 E-value=4.9 Score=18.29 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=29.0 Q ss_pred HHHHHHHHHHH---CCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999974---8957999972179997899999984 Q gi|254781217|r 9 ERIDNILASFS---GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 9 el~d~Ic~~Ia---~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) +.+=.|++.|+ .+.|++.|++.-|+|.+|+++-+.. T Consensus 5 ~r~l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~t 43 (75) T d1mkma1 5 KKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVV 43 (75) T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999985799989999999979199999999999 No 36 >d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]} Probab=62.15 E-value=4.9 Score=18.29 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=32.3 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89579999721799978999999848199999999999997999999999865 Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162) Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162) .|.|++.||+.-|++..|||+... +.+++ +........+.+.+.+.... T Consensus 23 ~~~ti~~Ia~~agvs~~s~y~~F~-~K~~l---~~~~~~~~~~~~~~~~~~~~ 71 (79) T d2fbqa1 23 AETSLRLITSKAGVNLAAVNYHFG-SKKAL---IQAVFSRFLGPFCASLEKEL 71 (79) T ss_dssp TTCCHHHHHHHHTSCHHHHHHHTC-SHHHH---HHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHHHH T ss_conf 504099999998828557878776-99999---99779999999999999997 No 37 >d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]} Probab=60.16 E-value=5.3 Score=18.06 Aligned_cols=55 Identities=7% Similarity=0.108 Sum_probs=34.7 Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999974895799997217999789999998481999999999999979999999998 Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLAS 70 (162) Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEile 70 (162) +-|.+.=-.|.|++.||+.-|++..+||+... +.+++- ....+...+.+.+++++ T Consensus 16 ~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~-~K~~L~---~~~~~~~~~~~~~~v~~ 70 (75) T d2hyja1 16 EIASEEGLDGITIGRLAEELEMSKSGVHKHFG-TKETLQ---ISTLDKAFVDFWHRVVE 70 (75) T ss_dssp HHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCS-SHHHHH---HHHHHHHHHHHHHHHTG T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHH---HHHHHHHHHHHHHHHHH T ss_conf 99997590307699999988909899988882-999999---99999999999999888 No 38 >d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]} Probab=59.27 E-value=3.9 Score=18.95 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=30.7 Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCHHHHHHHHH Q ss_conf 9999999999974895--------799997217999789999998 Q gi|254781217|r 7 TKERIDNILASFSGGL--------SLSQSCKKHGVTVVSFHGWVK 43 (162) Q Consensus 7 t~el~d~Ic~~Ia~G~--------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162) -.++++.|.++|.+|. |.+.+|...|++..|+.+=+. T Consensus 11 y~qi~~~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~Al~ 55 (100) T d1v4ra1 11 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALA 55 (100) T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTT T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999999999849999939883699999998879899999999 No 39 >d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]} Probab=59.15 E-value=5.5 Score=17.95 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=31.3 Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 489579999721799978999999848199999999999997999999999 Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLA 69 (162) Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEil 69 (162) -+|.|++.||+.-|++..|||+... +.+++ +..+.....+.+.+.+- T Consensus 27 ~~~~t~~~Ia~~agvs~~~~Y~~F~-~k~~L---~~~~~~~~~~~~~~~~~ 73 (79) T d2oi8a1 27 ASALSLNAIAKRMGMSGPALYRYFD-GRDEL---ITELIRDAYRSQADSLR 73 (79) T ss_dssp TTSCCHHHHHHHTTCCHHHHHTTCS-SHHHH---HHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCCCCHHHHCC-CHHHH---HHHHHHHHHHHHHHHHH T ss_conf 0306799999986799774455169-99999---99999999999999999 No 40 >d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=58.25 E-value=5.7 Score=17.85 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=25.3 Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH Q ss_conf 48957999972179997899999984819999 Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162) Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162) -.|.|++.||+.-|++..|||++.. +.+++- T Consensus 20 ~~~~ti~~Ia~~agvs~~~ly~~F~-~K~~L~ 50 (72) T d2g3ba1 20 IRGLRVNDVAEVAGVSPGLLYYHFK-DRIGLL 50 (72) T ss_dssp HHHCCHHHHHHHHTSCHHHHHHHHC-SHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHH T ss_conf 2407799999885969779998883-999999 No 41 >d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=58.14 E-value=3.7 Score=19.07 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=26.5 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 9999999748957999972179997899999984 Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) +-.++..-+ |.|++.||+.-|++..|+|+.... T Consensus 10 a~~l~~~~G-~~ti~~Ia~~agvs~~~iY~~F~~ 42 (65) T d2g7ga1 10 ALELVDRDG-DFRMPDLARHLNVQVSSIYHHAKG 42 (65) T ss_dssp HHHHHHHHS-SCCHHHHHHHTTSCHHHHHTTSCH T ss_pred HHHHHHHCC-CCCHHHHHHHHCCCCCCHHHCCCC T ss_conf 999997867-978999998857061313115899 No 42 >d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]} Probab=57.54 E-value=5.9 Score=17.77 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=23.1 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHH Q ss_conf 895799997217999789999998481999 Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162) Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162) +| +++.||+.-|++..|||+... +.+++ T Consensus 31 ~~-t~~~Ia~~agvs~~~~Y~~F~-sK~~L 58 (88) T d1t33a1 31 HA-TTRDIAALAGQNIAAITYYFG-SKEDL 58 (88) T ss_dssp GS-CHHHHHHHHTSCHHHHHHHHS-SHHHH T ss_pred CC-CHHHHHHHHCCCHHHHHCCCC-CHHHH T ss_conf 16-799999883998443100198-99999 No 43 >d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]} Probab=57.52 E-value=3.4 Score=19.32 Aligned_cols=54 Identities=11% Similarity=0.141 Sum_probs=35.0 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH-----CHHHHHHHHHHHHHHH Q ss_conf 299999999999748957999972179997899999984-----8199999999999997 Q gi|254781217|r 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ-----DREDLEKRYEQAKQSH 60 (162) Q Consensus 6 yt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k-----d~eef~e~Y~~Ar~~~ 60 (162) +|+ .--+||..|+.|.+...|+...+++..|+-..+.. +-....+.+..|+..| T Consensus 23 LT~-rE~~vl~ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl~~~~~~~lv~~a~~~g 81 (87) T d1p4wa_ 23 LSP-KESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVS 81 (87) T ss_dssp CCH-HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHT T ss_pred CCH-HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC T ss_conf 999-99999999992899999987869799999999999999849999999999999968 No 44 >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} Probab=56.79 E-value=6 Score=17.69 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHCCH--------HHHHHHHCCCCCHHHHHHHHH Q ss_conf 99999999974895--------799997217999789999998 Q gi|254781217|r 9 ERIDNILASFSGGL--------SLSQSCKKHGVTVVSFHGWVK 43 (162) Q Consensus 9 el~d~Ic~~Ia~G~--------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162) ++++.|.+.|.+|. |.+.+|...|++..|+.+=+. T Consensus 2 qi~~~i~~~I~~g~l~~G~~LPse~~La~~~~vSr~tvr~Al~ 44 (78) T d3bwga1 2 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLE 44 (78) T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 7999999999849999939993799999998879899999999 No 45 >d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]} Probab=55.95 E-value=6.2 Score=17.60 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=25.3 Q ss_pred HHHHHHHCC-HHHHHHHHCCCCCHHH---HHHHHHHCHHHHHH Q ss_conf 999997489-5799997217999789---99999848199999 Q gi|254781217|r 13 NILASFSGG-LSLSQSCKKHGVTVVS---FHGWVKQDREDLEK 51 (162) Q Consensus 13 ~Ic~~Ia~G-~SLr~Ick~~gmp~~T---v~~Wl~kd~eef~e 51 (162) .|+..|..| .|-+.|.+..|++..| +-+|++..+.+++. T Consensus 49 ~ia~~L~~G~~s~reI~~~~gvs~aTItR~s~~Lk~~~~~~k~ 91 (101) T d1jhga_ 49 RIIEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQ 91 (101) T ss_dssp HHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHH T ss_conf 9999999089679999999698757788999998728858999 No 46 >d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]} Probab=55.22 E-value=6.4 Score=17.53 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=27.2 Q ss_pred HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH Q ss_conf 9999748957999972179997899999984819999 Q gi|254781217|r 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162) Q Consensus 14 Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162) +.+.=-.+.|++.||+.-|++..|||+.... .+++- T Consensus 15 ~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~-K~~l~ 50 (68) T d2d6ya1 15 FARHGIAGARIDRIAAEARANKQLIYAYYGN-KGELF 50 (68) T ss_dssp HHHHTTTSCCHHHHHHHHTCCHHHHHHHHSS-HHHHH T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH T ss_conf 9985925067999998878466289888749-99999 No 47 >d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Probab=53.04 E-value=5.5 Score=17.97 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=27.7 Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 42999999999997489579999721799978999999848 Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162) Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162) .|=+++...-+++ .| +.+++++..|++..|+|+.+.+. T Consensus 20 ~~Er~~I~~aL~~--~g-n~~~aA~~Lgisr~tL~rKlkk~ 57 (61) T d1g2ha_ 20 FYEAQVLKLFYAE--YP-STRKLAQRLGVSHTAIANKLKQY 57 (61) T ss_dssp HHHHHHHHHHHHH--SC-SHHHHHHHTTSCTHHHHHHHHTT T ss_pred HHHHHHHHHHHHH--CC-CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999999999998--78-99999999798899999999996 No 48 >d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]} Probab=51.58 E-value=7.3 Score=17.15 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=27.8 Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH Q ss_conf 999999748957999972179997899999984819999 Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162) Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162) +-+.+.=-.|.|++.||+.-|++..|||++... .+++- T Consensus 10 ~l~~~~G~~~~s~~~Ia~~agvs~~tiy~~F~~-K~~L~ 47 (62) T d2vkva1 10 ELGNEVGIEGLTTRKLAQKLGVEQPTLYWHVKN-KRALL 47 (62) T ss_dssp HHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSCC-HHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH T ss_conf 999983935178999998809888899988879-99999 No 49 >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=48.15 E-value=7.8 Score=16.96 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=27.3 Q ss_pred HHHHHHHHHHHCCH--------HHHHHHHCCCCCHHHHHHHHH Q ss_conf 99999999974895--------799997217999789999998 Q gi|254781217|r 9 ERIDNILASFSGGL--------SLSQSCKKHGVTVVSFHGWVK 43 (162) Q Consensus 9 el~d~Ic~~Ia~G~--------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162) -+.+.|.+.|.+|. |.+.+|+..|++..|+.+=+. T Consensus 7 ~~~e~i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr~Al~ 49 (74) T d1hw1a1 7 FAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQ 49 (74) T ss_dssp HHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999999849999949983499999998979899999999 No 50 >d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]} Probab=47.31 E-value=3.5 Score=19.23 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=33.3 Q ss_pred HHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 997489579999721799978999999848199999999999997999999999865 Q gi|254781217|r 16 ASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162) Q Consensus 16 ~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162) ++=-.+.|++.||+.-||+..|||+..... +++-... .+ +..-+.+.+.+.+ T Consensus 11 ~~G~~~~s~~~IA~~agvs~~~ly~~F~sK-~~L~~a~---~~-~~~~~~e~~~~~~ 62 (65) T d2np3a1 11 ERGFDATSLRRIAETAGVDQSLVHHFYGTK-ENLFLQA---LE-LPGKIEEAITAAA 62 (65) T ss_dssp --------------------------CCC--CHHHHHH---HC-HHHHHHHHHHHHT T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHCCCH-HHHHHHH---HH-HHHHHHHHHHHHC T ss_conf 879040779999998786887999888799-9999999---99-8740999999870 No 51 >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=47.02 E-value=8.6 Score=16.69 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHCCH--HHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999974895--7999972179997899999984 Q gi|254781217|r 9 ERIDNILASFSGGL--SLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 9 el~d~Ic~~Ia~G~--SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) +..-+|+..|.+|. |...+++..|++..|+++.+.. T Consensus 5 ~~~~~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~i~~ 42 (63) T d1biaa1 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQT 42 (63) T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 79999999999789587999999989399999999999 No 52 >d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]} Probab=46.59 E-value=8.7 Score=16.65 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=27.1 Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHH Q ss_conf 9999974895799997217999789999998481999 Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162) Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162) -+.+.=-++.|++.||+.-|++..|||+... +.+++ T Consensus 18 l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~-~k~~L 53 (68) T d2id3a1 18 ALAADGFDALDLGEIARRAGVGKTTVYRRWG-TPGGL 53 (68) T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC-SHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH T ss_conf 9998493407799999997868879999985-99999 No 53 >d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]} Probab=46.14 E-value=7.2 Score=17.20 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=16.8 Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 9999974895799997217999789999998 Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVK 43 (162) Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162) .|++.. +|.+...+|+.+|++-.++++=++ T Consensus 59 ~I~~ef-~G~n~~eLA~kY~lS~~~I~~Ii~ 88 (94) T d1rr7a_ 59 RIWNDF-NGRNVSELTTRYGVTFNTVYKAIR 88 (94) T ss_dssp HHHHHC-CSSCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHH-CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999990-899899999998977999999999 No 54 >d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]} Probab=45.08 E-value=9.1 Score=16.50 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=24.6 Q ss_pred HHHHHHHHHCCHHH----HHHHHCCCCCHHHHHHHHHH Q ss_conf 99999997489579----99972179997899999984 Q gi|254781217|r 11 IDNILASFSGGLSL----SQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 11 ~d~Ic~~Ia~G~SL----r~Ick~~gmp~~Tv~~Wl~k 44 (162) ...+-..+.+|.|. ..+|...|++.+|+++|... T Consensus 39 l~~V~~L~~~G~~~~~A~~~VA~~~~vs~~TL~nW~~~ 76 (99) T d2ezla_ 39 VQAADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQ 76 (99) T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHSSSCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999869708999999999959889999999999 No 55 >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=44.59 E-value=8.6 Score=16.67 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=29.1 Q ss_pred CHHHHHHHHHHHHCCH-------HHHHHHHCCCCCHHHHHHHHH Q ss_conf 9999999999974895-------799997217999789999998 Q gi|254781217|r 7 TKERIDNILASFSGGL-------SLSQSCKKHGVTVVSFHGWVK 43 (162) Q Consensus 7 t~el~d~Ic~~Ia~G~-------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162) +..+++.|++.|.+|. |.+.+|+..|++..|+..=+. T Consensus 4 ~~qi~~~l~~~I~~g~~~~G~~l~~~~La~~~~vSr~tvr~Al~ 47 (69) T d2hs5a1 4 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQ 47 (69) T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999999982999992966999999998979899999999 No 56 >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} Probab=44.52 E-value=6.8 Score=17.33 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=29.2 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 999999999748957999972179997899999984 Q gi|254781217|r 9 ERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 9 el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) .+.+-|-+.+.+.-++..+|+..||+.++|.+..++ T Consensus 7 ~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~ 42 (54) T d1bl0a1 7 SILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 42 (54) T ss_dssp HHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999865479999999999989399999999999 No 57 >d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]} Probab=44.48 E-value=9.3 Score=16.44 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=36.8 Q ss_pred CHHHHHHHHHH-HHCCHHHHHHHHCCCCCHHHHHHHHHHC-HHHHHH--HHHHHHHHHHHHHHHH Q ss_conf 99999999999-7489579999721799978999999848-199999--9999999979999999 Q gi|254781217|r 7 TKERIDNILAS-FSGGLSLSQSCKKHGVTVVSFHGWVKQD-REDLEK--RYEQAKQSHMEHLSEN 67 (162) Q Consensus 7 t~el~d~Ic~~-Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd-~eef~e--~Y~~Ar~~~ad~ladE 67 (162) ...+.+.|=.. ...|.|...+++..|++.+++.+|.+.. ...+.. +++.+-..-.+.|+.+ T Consensus 8 ~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~ 72 (77) T d2b5aa1 8 KRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRK 72 (77) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC T ss_conf 99999999999998099999999897979999999986998999999999999969899998542 No 58 >d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]} Probab=44.46 E-value=9.3 Score=16.44 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=39.8 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHH Q ss_conf 29999999999974895799997217999789999998481999999999 Q gi|254781217|r 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQ 55 (162) Q Consensus 6 yt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~ 55 (162) +++..-.-|.-+.-.|.|...|+...|++..||+.-+.+....++ .|.. T Consensus 19 Lpe~QR~vl~L~~~e~ls~~EIA~~lgiS~~aV~~~l~Ra~~~L~-~ye~ 67 (106) T d1xsva_ 19 LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVE-DYEK 67 (106) T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH-HHHH T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHH T ss_conf 999999999999990875999999989599999999999999999-9999 No 59 >d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]} Probab=43.40 E-value=9.7 Score=16.33 Aligned_cols=35 Identities=20% Similarity=0.440 Sum_probs=27.7 Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999748957999972179997899999984 Q gi|254781217|r 10 RIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 10 l~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) -+.-+.+-+..=.|+..+|+.+|++..-|++|... T Consensus 39 KaaVV~av~~Gl~S~~EAcrrY~LS~eEf~~W~~a 73 (93) T d2oa4a1 39 KIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSA 73 (93) T ss_dssp HHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999838577999998839999999999999 No 60 >d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]} Probab=42.86 E-value=9.9 Score=16.28 Aligned_cols=25 Identities=8% Similarity=0.054 Sum_probs=13.6 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 8957999972179997899999984 Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) .|-..+..++..||++.|+|+++++ T Consensus 61 ~~gn~~~aA~~LGisR~tL~~klk~ 85 (89) T d1etxa_ 61 TRGNATRAALMMGINRGTLRKKLKK 85 (89) T ss_dssp TTTCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 2996999999989789999999998 No 61 >d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]} Probab=41.86 E-value=10 Score=16.18 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=26.1 Q ss_pred HHHHHHHHHC-CHHHHHHHHCCCCCH-HHHHHHHHH Q ss_conf 9999999748-957999972179997-899999984 Q gi|254781217|r 11 IDNILASFSG-GLSLSQSCKKHGVTV-VSFHGWVKQ 44 (162) Q Consensus 11 ~d~Ic~~Ia~-G~SLr~Ick~~gmp~-~Tv~~Wl~k 44 (162) .+..|..|.+ ..|+..|+...|... +.|.++..+ T Consensus 3 l~~a~~lL~~t~~~i~~IA~~~Gf~~~~~F~r~Fk~ 38 (62) T d1bl0a2 3 MTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKN 38 (62) T ss_dssp HHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH T ss_conf 999999988369999999999879988999999998 No 62 >d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]} Probab=40.88 E-value=8.6 Score=16.69 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=26.4 Q ss_pred HHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH Q ss_conf 99748957999972179997899999984819999 Q gi|254781217|r 16 ASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162) Q Consensus 16 ~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162) +.=-++-|++.||+.-|++..+||+... +.+++- T Consensus 19 ~~g~~~~si~~ia~~~gvs~~~~y~hF~-~K~~L~ 52 (68) T d2g7la1 19 AEGLEKVTMRRLAQELDTGPASLYVYVA-NTAELH 52 (68) T ss_dssp HHCSSSCCHHHHHHHTTSCHHHHTTTCC-SHHHHH T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHH T ss_conf 8490307899999997828767628775-999999 No 63 >d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]} Probab=40.44 E-value=4.1 Score=18.82 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=28.8 Q ss_pred HHHHHHHHHH-----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH Q ss_conf 9999999974-----8957999972179997899999984819999 Q gi|254781217|r 10 RIDNILASFS-----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162) Q Consensus 10 l~d~Ic~~Ia-----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162) +.+.-++.++ +|.|++.|++.-|++..|||+... +.+++- T Consensus 7 Ii~aa~~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~hF~-~K~~L~ 51 (68) T d1z0xa1 7 IIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFK-NKQALL 51 (68) T ss_dssp HHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCS-SHHHHH T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHH T ss_conf 999999999876792316799999987726568999629-999999 No 64 >d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]} Probab=40.12 E-value=4.6 Score=18.45 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=25.9 Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH Q ss_conf 489579999721799978999999848199999 Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162) Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162) -.+-|++.||+.-|++..|||+... +.+++-. T Consensus 24 ~~~~sv~~Ia~~agvs~~t~Y~~F~-~k~~l~~ 55 (71) T d2iu5a1 24 YHQISVSDIMQTAKIRRQTFYNYFQ-NQEELLS 55 (71) T ss_dssp GGGCCHHHHHHHHTSCGGGGGGTCS-SHHHHHH T ss_pred CCCCCHHHHHHHHCCCCCHHHHHCC-CHHHHHH T ss_conf 6407799999875716458977767-9999999 No 65 >d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]} Probab=37.64 E-value=12 Score=15.76 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=27.3 Q ss_pred HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH Q ss_conf 9999748957999972179997899999984819999 Q gi|254781217|r 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162) Q Consensus 14 Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162) |.+.=-.|.|++.||+.-|++..|||+... +.+++- T Consensus 17 ~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~-~K~~L~ 52 (73) T d2fx0a1 17 FGERGYEGTSIQEIAKEAKVNVAMASYYFN-GKENLY 52 (73) T ss_dssp HHHHCTTTCCHHHHHHHHTSCHHHHHHHHT-SHHHHH T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHH T ss_conf 998693517699999987848649998884-999999 No 66 >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=36.37 E-value=12 Score=15.63 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHHC--C-HHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 9999999999748--9-57999972179997899999984 Q gi|254781217|r 8 KERIDNILASFSG--G-LSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 8 ~el~d~Ic~~Ia~--G-~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) .+-...|+..|.+ + .|...++...|++..|+++-+.. T Consensus 6 ~eR~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~ 45 (65) T d1j5ya1 6 QERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAY 45 (65) T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999999998599785999999979899999999999 No 67 >d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]} Probab=34.11 E-value=11 Score=16.08 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=24.8 Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 9748957999972179997899999984 Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) |...|.|...+++..|++.+++.+|.+. T Consensus 10 R~~~g~tq~elA~~~gis~~~is~~e~g 37 (66) T d1utxa_ 10 REKKKISQSELAALLEVSRQTINGIEKN 37 (66) T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTT T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCC T ss_conf 9985999999988635579899999869 No 68 >d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]} Probab=33.21 E-value=11 Score=15.94 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=24.9 Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 9748957999972179997899999984 Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) |...|.|...++...|++..|+.+|-.- T Consensus 10 R~~~gltQ~elA~~LGvs~~ti~~yE~G 37 (67) T d2auwa1 10 MHRNNLSLTTAAEALGISRRMVSYYRTA 37 (67) T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTT T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 9995999999999959989999999869 No 69 >d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]} Probab=32.96 E-value=9.5 Score=16.41 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.6 Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 9748957999972179997899999984 Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) |...|.|...++...|++..++.+|.+. T Consensus 10 R~~~g~sq~elA~~~gvs~~~is~~E~g 37 (63) T d1r69a_ 10 RIQLGLNQAELAQKVGTTQQSIEQLENG 37 (63) T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTT T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 9984996999999837399999998789 No 70 >d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]} Probab=32.41 E-value=12 Score=15.72 Aligned_cols=50 Identities=16% Similarity=0.067 Sum_probs=32.8 Q ss_pred HHHHHHHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHHHHHHHHHH Q ss_conf 99999999-974895799997217999789999998481-999999999999 Q gi|254781217|r 9 ERIDNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLEKRYEQAKQ 58 (162) Q Consensus 9 el~d~Ic~-~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~e~Y~~Ar~ 58 (162) ++.+.|-. |...|.|...+++..|++.+++.+|.+-.. ..+..-+.-|+. T Consensus 9 ~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~ 60 (69) T d1y7ya1 9 KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATA 60 (69) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 9999999999983999999986829989899999879999999999999999 No 71 >d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]} Probab=31.63 E-value=9.7 Score=16.34 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=34.3 Q ss_pred HHHHHHHH-HHCCHHHHHHHHCCCCCHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHH Q ss_conf 99999999-748957999972179997899999984819--99999999999979999 Q gi|254781217|r 10 RIDNILAS-FSGGLSLSQSCKKHGVTVVSFHGWVKQDRE--DLEKRYEQAKQSHMEHL 64 (162) Q Consensus 10 l~d~Ic~~-Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~e--ef~e~Y~~Ar~~~ad~l 64 (162) +.+.|=.. -..|.|...+++..|++..|+.+|.+-... ++-..++.+.....+.| T Consensus 4 i~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~L 61 (65) T d2croa_ 4 LSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWL 61 (65) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCTTHHHHHHHTTSCHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHH T ss_conf 9999999999849999999999786794999878779999999999999969989998 No 72 >d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]} Probab=31.12 E-value=13 Score=15.49 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=32.6 Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHH--CHHHHHHH--HHHHHHHHHHHHH Q ss_conf 9748957999972179997899999984--81999999--9999999799999 Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQ--DREDLEKR--YEQAKQSHMEHLS 65 (162) Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k--d~eef~e~--Y~~Ar~~~ad~la 65 (162) +...|.|...+++..|++..++.+|.+- ....+..- ++.+.....+.|+ T Consensus 10 R~~~gltq~~la~~~gis~~~i~~~E~g~~~~ps~~~l~~ia~~l~v~~~~l~ 62 (68) T d1b0na2 10 RKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLL 62 (68) T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHH T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHC T ss_conf 99829999999989797999999998599899999999999999898699983 No 73 >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Probab=30.86 E-value=15 Score=15.05 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=27.4 Q ss_pred HHHHHHHHHHC--CHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999748--957999972179997899999984 Q gi|254781217|r 10 RIDNILASFSG--GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 10 l~d~Ic~~Ia~--G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) +=..|+..|.. -.|.+.|.+..|+|.+|+++.+++ T Consensus 6 ~D~~IL~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~ 42 (63) T d2cfxa1 6 IDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQ 42 (63) T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999999839999999999989687899999999 No 74 >d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]} Probab=30.69 E-value=15 Score=15.03 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=25.7 Q ss_pred HHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 999997-48957999972179997899999984 Q gi|254781217|r 13 NILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 13 ~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) .|...| -.|.||+++.+..|++++|+..=+.+ T Consensus 13 dI~AaL~krG~sLa~lsr~~gls~stl~naL~r 45 (74) T d1nera_ 13 DVIAGLKKRKLSLSALSRQFGYAPTTLANALER 45 (74) T ss_dssp HHHHHHTTSSCCHHHHHHHHSCCHHHHHHTTTS T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 999999996887999999909987899999837 No 75 >d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]} Probab=29.09 E-value=14 Score=15.23 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=35.0 Q ss_pred HHHHHHHHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHHHHHHHHHHHHH Q ss_conf 999999999-974895799997217999789999998481-999999999999979 Q gi|254781217|r 8 KERIDNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLEKRYEQAKQSHM 61 (162) Q Consensus 8 ~el~d~Ic~-~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~e~Y~~Ar~~~a 61 (162) ..+.+.|=. +...|.|...+++..|++..++.+|.+-.. ..+..-+.-|+..++ T Consensus 7 ~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v 62 (79) T d1y9qa1 7 SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEA 62 (79) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCC T ss_conf 99999999999982999999999877116489999869989999999999999898 No 76 >d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]} Probab=28.32 E-value=11 Score=16.09 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=20.8 Q ss_pred HHCCHHHHHHHHCCCCCHHHHHHHH Q ss_conf 7489579999721799978999999 Q gi|254781217|r 18 FSGGLSLSQSCKKHGVTVVSFHGWV 42 (162) Q Consensus 18 Ia~G~SLr~Ick~~gmp~~Tv~~Wl 42 (162) +..|.||-+|++.+|++...+.+|= T Consensus 7 V~~GDTl~~IA~~y~vs~~~i~~~N 31 (48) T d1e0ga_ 7 VRKGDSLSSIAKRHGVNIKDVMRWN 31 (48) T ss_dssp ECTTCCHHHHHHHHTCCHHHHHHHC T ss_pred ECCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 8999999999999798899999875 No 77 >d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]} Probab=28.18 E-value=15 Score=15.12 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=28.5 Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999748957999972179997899999984 Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) .++..|+...|+++.++..||+.+++++-++. T Consensus 24 ~~~~ai~~~gs~~~AA~~l~~sq~avs~~i~~ 55 (127) T d1b9ma1 24 SLLKHIALSGSISQGAKDAGISYKSAWDAINE 55 (127) T ss_dssp HHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999599589998815876299999999 No 78 >d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]} Probab=27.94 E-value=17 Score=14.73 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=38.7 Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH Q ss_conf 2999999999997489579999721799978999999848199999 Q gi|254781217|r 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162) Q Consensus 6 yt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162) +++..-.-|.-+.-.|.|...|+...|+|..||..-+.+....+++ T Consensus 17 Lp~~qR~v~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~~ 62 (106) T d1s7oa_ 17 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILET 62 (106) T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999989899919999999999896999999999999999999 No 79 >d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]} Probab=26.78 E-value=13 Score=15.52 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=26.9 Q ss_pred HHHHHHHH-HHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999-748957999972179997899999984 Q gi|254781217|r 10 RIDNILAS-FSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 10 l~d~Ic~~-Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) +.+.|=.. -..|.|...+++..|++.+|+.+|.+. T Consensus 4 ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g 39 (66) T d2r1jl1 4 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERS 39 (66) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTT T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 999999999985999999999979899999999869 No 80 >d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]} Probab=25.88 E-value=17 Score=14.68 Aligned_cols=39 Identities=3% Similarity=0.067 Sum_probs=27.5 Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 4299999999999748957999972179997899999984 Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) +.+-....- +..|+.-.|++++++..+++.+++.+.+++ T Consensus 5 ~ldl~~L~~-f~~v~~~gs~t~AA~~l~isq~avs~~l~~ 43 (89) T d2esna1 5 RLDLNLLLV-FDALYRHRNVGTAASELAISASAFSHALGR 43 (89) T ss_dssp TSCTTHHHH-HHHHHHHSSHHHHHHHHTCCHHHHHHHHHH T ss_pred CCCHHHHHH-HHHHHHHCCHHHHHHHHCCCCCHHHHHHHH T ss_conf 589999999-999998099999999877998475599999 No 81 >d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]} Probab=25.01 E-value=18 Score=14.52 Aligned_cols=55 Identities=13% Similarity=-0.044 Sum_probs=35.9 Q ss_pred CCHHHHHHHHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHHHHHHHHHHHH Q ss_conf 29999999999-974895799997217999789999998481-99999999999997 Q gi|254781217|r 6 YTKERIDNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLEKRYEQAKQSH 60 (162) Q Consensus 6 yt~el~d~Ic~-~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~e~Y~~Ar~~~ 60 (162) .+-++.+.|-. |...|.|...+++..|++.+++.+|-+-.. ..+..-..-|+..+ T Consensus 3 ~~~~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~G~~~p~~~~l~~la~~l~ 59 (78) T d1x57a1 3 VTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIG 59 (78) T ss_dssp CCCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC T ss_conf 548999999999998599726788718878999999980677999999999999909 No 82 >d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]} Probab=24.02 E-value=20 Score=14.26 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=30.6 Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999997-48957999972179997899999984 Q gi|254781217|r 8 KERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 8 ~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) .+++..|-..+ ..|.|.+.+....|++..|+.+|.+- T Consensus 10 ~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G 47 (89) T d2o38a1 10 LRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNY 47 (89) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999995999999999997337089999849 No 83 >d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]} Probab=23.38 E-value=18 Score=14.55 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=13.9 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 8957999972179997899999984 Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) .|-..+..++..|+++.|+|+.+++ T Consensus 63 ~~Gn~~~AA~~LGI~R~TL~~Klk~ 87 (91) T d1ntca_ 63 TQGHKQEAARLLGWGAATLTAKLKE 87 (91) T ss_dssp TTTCTTHHHHHTTCCHHHHHHHHHH T ss_pred HCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 5995999999979889999999998 No 84 >d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=22.35 E-value=22 Score=14.05 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=25.1 Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999748957999972179997899999984 Q gi|254781217|r 10 RIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 10 l~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) +.+-|-+.+..--+|..+|+..||+.++|.+-.++ T Consensus 8 i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk~ 42 (54) T d1d5ya1 8 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD 42 (54) T ss_dssp HHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999874489999999999989299999999999 No 85 >d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=22.33 E-value=22 Score=14.05 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=36.4 Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH--HCHHHHHHHHHHHH Q ss_conf 99999999974895799997217999789999998--48199999999999 Q gi|254781217|r 9 ERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVK--QDREDLEKRYEQAK 57 (162) Q Consensus 9 el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~--kd~eef~e~Y~~Ar 57 (162) +.+..|-..+..|.|...|++..|.+.++|.+.+. +-|++..+.|..-. T Consensus 18 e~A~a~~~l~~~g~s~~eiA~~~G~s~~~V~~~l~L~~lp~~v~~~~~~g~ 68 (114) T d1r71a_ 18 EIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFNTGR 68 (114) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHHTTS T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCC T ss_conf 999999999880998999999977729999999999679999999999499 No 86 >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=21.67 E-value=22 Score=13.96 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=25.6 Q ss_pred HHHHHHHH-CCH-HHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999974-895-7999972179997899999984 Q gi|254781217|r 12 DNILASFS-GGL-SLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 12 d~Ic~~Ia-~G~-SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) .+|+..|. +|. |.+.+.+..|+|..|+++.+.+ T Consensus 6 ~kIl~~L~~n~r~s~~~lA~~~gls~~~v~~Ri~~ 40 (60) T d1i1ga1 6 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKA 40 (60) T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999998849999999999989299999999999 No 87 >d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]} Probab=21.42 E-value=22 Score=13.93 Aligned_cols=48 Identities=6% Similarity=0.016 Sum_probs=35.2 Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHH Q ss_conf 4895799997217999789999998481---99999999999997999999 Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDR---EDLEKRYEQAKQSHMEHLSE 66 (162) Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~---eef~e~Y~~Ar~~~ad~lad 66 (162) ..|.|...+++..|++.+|+.+|.+-.. .++..+.+.+-...+++++. T Consensus 12 ~~glsq~~LA~~lGvs~~~is~ie~g~~~~s~~~~~kla~~lgvs~~~~L~ 62 (87) T d2icta1 12 ELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLN 62 (87) T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHH T ss_pred HCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHH T ss_conf 869999999999724699999999850179899999999998919999982 No 88 >d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]} Probab=20.58 E-value=23 Score=13.82 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=25.5 Q ss_pred HHHHCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99748957999972179997899999984 Q gi|254781217|r 16 ASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 16 ~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) -|...|.|-..+++..|++.+|+.+|-.- T Consensus 7 ~R~~~gltQ~elA~~lGvs~~tvs~~E~G 35 (62) T d2ppxa1 7 IRRALKLTQEEFSARYHIPLGTLRDWEQG 35 (62) T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTT T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 99996999999999969899999988779 No 89 >d2coba1 a.4.1.15 (A:8-70) Ligand-dependent corepressor (LCoR) {Human (Homo sapiens) [TaxId: 9606]} Probab=20.21 E-value=24 Score=13.77 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=31.2 Q ss_pred HHCCHHHHHHHHHHHHCC-HHHHHHHHCCCCCHHHHHHHH Q ss_conf 242999999999997489-579999721799978999999 Q gi|254781217|r 4 HKYTKERIDNILASFSGG-LSLSQSCKKHGVTVVSFHGWV 42 (162) Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G-~SLr~Ick~~gmp~~Tv~~Wl 42 (162) ++|+++..++-...+..| +|+...-.-.|+|.+|+-.-. T Consensus 5 R~Yd~d~l~eAv~~V~~G~MSV~rA~~~ygvPHSTLEYKV 44 (63) T d2coba1 5 RQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKV 44 (63) T ss_dssp CCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCEEEHHCCCCCCCCCHHHHHHH T ss_conf 2168889999999998354122303753057750112237 No 90 >d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]} Probab=20.19 E-value=24 Score=13.76 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=28.0 Q ss_pred HHHHHHHHHHH--CCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999974--8957999972179997899999984 Q gi|254781217|r 9 ERIDNILASFS--GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162) Q Consensus 9 el~d~Ic~~Ia--~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162) .+++-|.+... ...|++.+++.-|++.+|+.|.+++ T Consensus 22 ~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kk 59 (83) T d2o3fa1 22 KLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKS 59 (83) T ss_dssp HHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999982999998831999999979899899999999 Done!