Query gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 162
No_of_seqs 111 out of 119
Neff 5.2
Searched_HMMs 13730
Date Wed Jun 1 11:46:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781217.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijwc_ a.4.1.2 (C:) HIN recom 96.9 0.0003 2.2E-08 46.1 3.3 42 3-44 3-44 (47)
2 d2jn6a1 a.4.1.19 (A:1-89) Unch 96.5 0.0012 8.6E-08 42.1 4.1 45 1-45 1-47 (89)
3 d1pdnc_ a.4.1.5 (C:) Paired pr 94.6 0.018 1.3E-06 34.3 4.1 42 5-46 16-57 (123)
4 d1k78a1 a.4.1.5 (A:19-81) Pax- 94.0 0.029 2.1E-06 33.0 4.1 41 5-45 14-54 (63)
5 d1hlva1 a.4.1.7 (A:1-66) DNA-b 92.6 0.099 7.2E-06 29.5 5.1 49 5-54 7-57 (66)
6 d1v7ba1 a.4.1.9 (A:1-74) Trans 86.8 0.69 5.1E-05 23.9 5.5 53 19-75 22-74 (74)
7 d1ui5a1 a.4.1.9 (A:5-75) A-fac 84.4 0.69 5E-05 23.9 4.5 34 19-53 23-56 (71)
8 d2gfna1 a.4.1.9 (A:4-80) Proba 82.8 1.6 0.00011 21.6 6.3 51 19-73 24-74 (77)
9 d2id6a1 a.4.1.9 (A:1-75) Trans 82.4 1.6 0.00012 21.5 6.6 59 8-70 6-68 (75)
10 d1t56a1 a.4.1.9 (A:22-94) Ethr 82.4 1.6 0.00012 21.5 6.8 44 10-54 8-55 (73)
11 d1sgma1 a.4.1.9 (A:5-77) Putat 82.2 1.5 0.00011 21.7 5.5 44 11-54 12-55 (73)
12 d1gdta1 a.4.1.2 (A:141-183) ga 82.0 0.64 4.7E-05 24.1 3.6 35 11-45 8-42 (43)
13 d2hkua1 a.4.1.9 (A:18-87) Puta 77.7 2.3 0.00017 20.5 6.5 38 12-50 11-48 (70)
14 d1jt6a1 a.4.1.9 (A:2-72) Multi 75.6 2.6 0.00019 20.1 6.2 37 14-51 14-50 (71)
15 d3c07a1 a.4.1.9 (A:15-89) Puta 74.7 2.3 0.00017 20.4 4.6 32 20-52 24-55 (75)
16 d1yioa1 a.4.6.2 (A:131-200) Re 73.4 1.4 0.0001 21.9 3.2 34 11-44 17-50 (70)
17 d1rkta1 a.4.1.9 (A:2-82) Hypot 72.8 3 0.00022 19.7 5.4 50 20-73 30-79 (81)
18 d1l3la1 a.4.6.2 (A:170-234) Qu 72.1 1.6 0.00011 21.6 3.2 38 6-44 5-42 (65)
19 d1a04a1 a.4.6.2 (A:150-216) Ni 71.1 1.8 0.00013 21.2 3.3 39 5-44 6-44 (67)
20 d2gena1 a.4.1.9 (A:6-75) Proba 70.4 3.4 0.00025 19.3 7.1 40 12-52 11-50 (70)
21 d1fsea_ a.4.6.2 (A:) Germinati 69.7 1.9 0.00014 21.1 3.2 34 11-44 9-42 (67)
22 d2o7ta1 a.4.1.9 (A:1-78) Trans 69.5 3.6 0.00026 19.2 6.1 31 20-51 26-56 (78)
23 d2g7sa1 a.4.1.9 (A:3-76) Putat 68.6 3.7 0.00027 19.1 5.9 39 11-50 14-52 (74)
24 d1zk8a1 a.4.1.9 (A:6-77) Trans 66.5 3.6 0.00026 19.2 4.1 57 12-72 14-70 (72)
25 d1pb6a1 a.4.1.9 (A:14-85) Hypo 66.0 4.2 0.0003 18.7 5.0 30 19-49 22-51 (72)
26 d2fd5a1 a.4.1.9 (A:1-76) Proba 66.0 2.2 0.00016 20.6 2.9 37 13-50 19-55 (76)
27 d2fq4a1 a.4.1.9 (A:9-77) Trans 65.8 3 0.00022 19.7 3.6 36 12-48 15-50 (69)
28 d1umqa_ a.4.1.12 (A:) Photosyn 65.5 3 0.00022 19.7 3.6 34 12-45 23-57 (60)
29 d1vi0a1 a.4.1.9 (A:6-77) Hypot 64.2 4.5 0.00033 18.5 6.1 55 14-72 14-68 (72)
30 d2ao9a1 a.4.1.17 (A:13-132) Ph 63.9 4.6 0.00033 18.5 4.9 31 22-54 37-67 (120)
31 d2i10a1 a.4.1.9 (A:10-78) Puta 63.9 4.6 0.00033 18.5 5.0 36 13-49 11-47 (69)
32 d1rp3a2 a.4.13.2 (A:164-234) S 63.0 4.7 0.00035 18.4 5.3 48 4-51 20-67 (71)
33 d2np5a1 a.4.1.9 (A:9-77) Trans 62.9 4.8 0.00035 18.4 4.4 54 11-68 11-64 (69)
34 d1or7a1 a.4.13.2 (A:120-187) S 62.4 4.9 0.00035 18.3 5.0 48 4-51 17-64 (68)
35 d1mkma1 a.4.5.33 (A:1-75) Tran 62.2 4.9 0.00036 18.3 4.8 36 9-44 5-43 (75)
36 d2fbqa1 a.4.1.9 (A:2-80) Trans 62.2 4.9 0.00036 18.3 6.3 49 20-72 23-71 (79)
37 d2hyja1 a.4.1.9 (A:8-82) Putat 60.2 5.3 0.00039 18.1 4.6 55 12-70 16-70 (75)
38 d1v4ra1 a.4.5.6 (A:1-100) Tran 59.3 3.9 0.00028 19.0 3.2 37 7-43 11-55 (100)
39 d2oi8a1 a.4.1.9 (A:8-86) Putat 59.2 5.5 0.0004 17.9 6.3 47 19-69 27-73 (79)
40 d2g3ba1 a.4.1.9 (A:2-73) Putat 58.3 5.7 0.00042 17.9 5.0 31 19-50 20-50 (72)
41 d2g7ga1 a.4.1.9 (A:9-73) Putat 58.1 3.7 0.00027 19.1 3.0 33 11-44 10-42 (65)
42 d1t33a1 a.4.1.9 (A:1-88) Putat 57.5 5.9 0.00043 17.8 6.8 28 20-49 31-58 (88)
43 d1p4wa_ a.4.6.2 (A:) Transcrip 57.5 3.4 0.00025 19.3 2.7 54 6-60 23-81 (87)
44 d3bwga1 a.4.5.6 (A:5-82) Trans 56.8 6 0.00044 17.7 4.0 35 9-43 2-44 (78)
45 d1jhga_ a.4.12.1 (A:) Trp repr 55.9 6.2 0.00045 17.6 4.5 39 13-51 49-91 (101)
46 d2d6ya1 a.4.1.9 (A:7-74) Putat 55.2 6.4 0.00047 17.5 5.0 36 14-50 15-50 (68)
47 d1g2ha_ a.4.1.12 (A:) Transcri 53.0 5.5 0.0004 18.0 3.1 38 5-45 20-57 (61)
48 d2vkva1 a.4.1.9 (A:6-67) Tetra 51.6 7.3 0.00053 17.2 3.7 38 12-50 10-47 (62)
49 d1hw1a1 a.4.5.6 (A:5-78) Fatty 48.1 7.8 0.00057 17.0 3.3 35 9-43 7-49 (74)
50 d2np3a1 a.4.1.9 (A:35-99) Puta 47.3 3.5 0.00026 19.2 1.4 52 16-72 11-62 (65)
51 d1biaa1 a.4.5.1 (A:1-63) Bioti 47.0 8.6 0.00062 16.7 3.9 36 9-44 5-42 (63)
52 d2id3a1 a.4.1.9 (A:13-80) Puta 46.6 8.7 0.00063 16.7 4.4 36 13-49 18-53 (68)
53 d1rr7a_ a.4.1.14 (A:) Middle o 46.1 7.2 0.00052 17.2 2.8 30 13-43 59-88 (94)
54 d2ezla_ a.4.1.2 (A:) Ibeta sub 45.1 9.1 0.00067 16.5 4.4 34 11-44 39-76 (99)
55 d2hs5a1 a.4.5.6 (A:25-93) Puta 44.6 8.6 0.00063 16.7 3.1 37 7-43 4-47 (69)
56 d1bl0a1 a.4.1.8 (A:9-62) MarA 44.5 6.8 0.0005 17.3 2.5 36 9-44 7-42 (54)
57 d2b5aa1 a.35.1.3 (A:1-77) Regu 44.5 9.3 0.00068 16.4 3.4 61 7-67 8-72 (77)
58 d1xsva_ a.4.13.3 (A:) Hypothet 44.5 9.3 0.00068 16.4 5.2 49 6-55 19-67 (106)
59 d2oa4a1 a.4.12.3 (A:1-93) Unch 43.4 9.7 0.00071 16.3 4.7 35 10-44 39-73 (93)
60 d1etxa_ a.4.1.12 (A:) FIS prot 42.9 9.9 0.00072 16.3 3.4 25 20-44 61-85 (89)
61 d1bl0a2 a.4.1.8 (A:63-124) Mar 41.9 10 0.00074 16.2 3.5 34 11-44 3-38 (62)
62 d2g7la1 a.4.1.9 (A:16-83) Puta 40.9 8.6 0.00062 16.7 2.6 34 16-50 19-52 (68)
63 d1z0xa1 a.4.1.9 (A:4-71) Trans 40.4 4.1 0.0003 18.8 0.9 40 10-50 7-51 (68)
64 d2iu5a1 a.4.1.9 (A:1-71) Trans 40.1 4.6 0.00034 18.5 1.1 32 19-51 24-55 (71)
65 d2fx0a1 a.4.1.9 (A:4-76) Hemol 37.6 12 0.00086 15.8 3.6 36 14-50 17-52 (73)
66 d1j5ya1 a.4.5.1 (A:3-67) Putat 36.4 12 0.0009 15.6 3.4 37 8-44 6-45 (65)
67 d1utxa_ a.35.1.3 (A:) Putative 34.1 11 0.00077 16.1 2.2 28 17-44 10-37 (66)
68 d2auwa1 a.35.1.10 (A:88-154) H 33.2 11 0.00081 15.9 2.2 28 17-44 10-37 (67)
69 d1r69a_ a.35.1.2 (A:) 434 C1 r 33.0 9.5 0.00069 16.4 1.8 28 17-44 10-37 (63)
70 d1y7ya1 a.35.1.3 (A:5-73) Rest 32.4 12 0.00088 15.7 2.2 50 9-58 9-60 (69)
71 d2croa_ a.35.1.2 (A:) cro 434 31.6 9.7 0.00071 16.3 1.6 55 10-64 4-61 (65)
72 d1b0na2 a.35.1.3 (A:1-68) SinR 31.1 13 0.00095 15.5 2.2 49 17-65 10-62 (68)
73 d2cfxa1 a.4.5.32 (A:1-63) Tran 30.9 15 0.0011 15.0 3.4 35 10-44 6-42 (63)
74 d1nera_ a.35.1.2 (A:) Ner {Bac 30.7 15 0.0011 15.0 3.6 32 13-44 13-45 (74)
75 d1y9qa1 a.35.1.8 (A:4-82) Prob 29.1 14 0.001 15.2 2.1 54 8-61 7-62 (79)
76 d1e0ga_ d.7.1.1 (A:) Membrane- 28.3 11 0.00077 16.1 1.4 25 18-42 7-31 (48)
77 d1b9ma1 a.4.5.8 (A:-1-126) N-t 28.2 15 0.0011 15.1 2.1 32 13-44 24-55 (127)
78 d1s7oa_ a.4.13.3 (A:) Hypothet 27.9 17 0.0012 14.7 8.1 46 6-51 17-62 (106)
79 d2r1jl1 a.35.1.2 (L:3-68) P22 26.8 13 0.00094 15.5 1.6 35 10-44 4-39 (66)
80 d2esna1 a.4.5.37 (A:3-91) Prob 25.9 17 0.0013 14.7 2.1 39 5-44 5-43 (89)
81 d1x57a1 a.35.1.12 (A:8-85) End 25.0 18 0.0013 14.5 2.1 55 6-60 3-59 (78)
82 d2o38a1 a.35.1.13 (A:28-116) H 24.0 20 0.0015 14.3 3.6 37 8-44 10-47 (89)
83 d1ntca_ a.4.1.12 (A:) DNA-bind 23.4 18 0.0013 14.6 1.8 25 20-44 63-87 (91)
84 d1d5ya1 a.4.1.8 (A:3-56) Rob t 22.4 22 0.0016 14.1 2.3 35 10-44 8-42 (54)
85 d1r71a_ a.4.14.1 (A:) Transcri 22.3 22 0.0016 14.0 5.1 49 9-57 18-68 (114)
86 d1i1ga1 a.4.5.32 (A:2-61) LprA 21.7 22 0.0016 14.0 3.4 33 12-44 6-40 (60)
87 d2icta1 a.35.1.3 (A:8-94) Anti 21.4 22 0.0016 13.9 3.0 48 19-66 12-62 (87)
88 d2ppxa1 a.35.1.3 (A:30-91) Unc 20.6 23 0.0017 13.8 4.8 29 16-44 7-35 (62)
89 d2coba1 a.4.1.15 (A:8-70) Liga 20.2 24 0.0017 13.8 4.2 39 4-42 5-44 (63)
90 d2o3fa1 a.4.1.20 (A:1-83) Puta 20.2 24 0.0017 13.8 3.3 36 9-44 22-59 (83)
No 1
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=96.90 E-value=0.0003 Score=46.08 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=39.1
Q ss_pred CHHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 124299999999999748957999972179997899999984
Q gi|254781217|r 3 AHKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 3 ~~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-+++|++.++.+-.++++|.|...||+..|++..|+|+|+-.
T Consensus 3 ~~~lt~~q~~~a~~l~~~G~s~~~iA~~~gVSr~TiYry~pa 44 (47)
T d1ijwc_ 3 PRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPA 44 (47)
T ss_dssp CCSSCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHSCS
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 885999999999999988997999999979699999855775
No 2
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=96.52 E-value=0.0012 Score=42.13 Aligned_cols=45 Identities=24% Similarity=0.464 Sum_probs=39.7
Q ss_pred CCCHHCCHHHHHHHHHHHH--CCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 9712429999999999974--89579999721799978999999848
Q gi|254781217|r 1 MYAHKYTKERIDNILASFS--GGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 1 m~~~Kyt~el~d~Ic~~Ia--~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
|.-.+||+|+=.++..... .|.|++.||++.|++.+|+++|+++.
T Consensus 1 M~rk~Ys~EfK~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k~~ 47 (89)
T d2jn6a1 1 MPTKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 94798999999999999998299859999999798988999999998
No 3
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=94.57 E-value=0.018 Score=34.25 Aligned_cols=42 Identities=7% Similarity=0.011 Sum_probs=38.6
Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCH
Q ss_conf 429999999999974895799997217999789999998481
Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDR 46 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~ 46 (162)
-|+.++-..|++.+.+|.|.+.||+..+++.+|+++|+.+..
T Consensus 16 pLs~dlR~rIv~~~~~G~s~r~iA~~~~VS~~tV~k~l~r~~ 57 (123)
T d1pdnc_ 16 PLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQ 57 (123)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 798999999999998048999999998969999999999987
No 4
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.99 E-value=0.029 Score=32.95 Aligned_cols=41 Identities=7% Similarity=-0.016 Sum_probs=37.9
Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 42999999999997489579999721799978999999848
Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
=|+-++-..|++.+..|.|-++|++..+++.+|+.+|+.+.
T Consensus 14 Pls~DLR~Riv~~~~~G~s~r~aA~rf~VS~s~v~k~l~r~ 54 (63)
T d1k78a1 14 PLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRY 54 (63)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 59999999999999959989999999597799999999999
No 5
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.61 E-value=0.099 Score=29.46 Aligned_cols=49 Identities=6% Similarity=0.106 Sum_probs=37.4
Q ss_pred HCCHHHHHHHHHHHHCCH--HHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH
Q ss_conf 429999999999974895--79999721799978999999848199999999
Q gi|254781217|r 5 KYTKERIDNILASFSGGL--SLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE 54 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia~G~--SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~ 54 (162)
.+|-+.=-+||.++..|. +-+.||+.+|+|.+||..|+.. .+.....+.
T Consensus 7 ~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKn-K~kil~~~~ 57 (66)
T d1hlva1 7 QLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN-KRAILASER 57 (66)
T ss_dssp CCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHH
T ss_conf 377999999999998087210999999959976479999987-999998899
No 6
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=86.78 E-value=0.69 Score=23.88 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=38.6
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 489579999721799978999999848199999999999997999999999865202
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVEAP 75 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad~~ 75 (162)
-.|-|++.||+.-|++..|||+... +.+++ +..+-+...+.+.+.+.+++.+|
T Consensus 22 ~~~~s~~~Ia~~agvs~~t~Y~~F~-~K~~L---~~~~~~~~~~~~~~~l~~~~~dP 74 (74)
T d1v7ba1 22 LETLSYDSLAEATGLSKSGLIYHFP-SRHAL---LLGMHELLADDWDKELRDITRDP 74 (74)
T ss_dssp STTCCHHHHHHHHCSCHHHHHHHCS-SHHHH---HHHHHHHHHHHHHHHHHHHCSST
T ss_pred CCCCCHHHHHHHHCCCCCHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5635799999884969223855079-99999---99999999999999998874798
No 7
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=84.44 E-value=0.69 Score=23.89 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=27.0
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHH
Q ss_conf 48957999972179997899999984819999999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRY 53 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y 53 (162)
-+|.|++.||+.-|++..|||++... .+++-...
T Consensus 23 ~~~~si~~Ia~~agvs~~~~y~~F~s-K~~L~~~~ 56 (71)
T d1ui5a1 23 YESTTLSEIVAHAGVTKGALYFHFAA-KEDLAHAI 56 (71)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSS-HHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHHHH
T ss_conf 46267999999879487699989829-99999999
No 8
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=82.76 E-value=1.6 Score=21.56 Aligned_cols=51 Identities=8% Similarity=0.156 Sum_probs=33.3
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4895799997217999789999998481999999999999979999999998652
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162)
-.|.|++.||+.-|++..|||+.... .+++-. .+-....+.+.+.+-++.+
T Consensus 24 ~~~~s~~~Ia~~agvs~~~lY~~F~~-K~~L~~---~~~~~~~~~~~~~~~~~~~ 74 (77)
T d2gfna1 24 ISAVTTRAVAEESGWSTGVLNHYFGS-RHELLL---AALRRAGDIQGDRYRTILD 74 (77)
T ss_dssp GGGCCHHHHHHHHSSCHHHHHHHTSS-HHHHHH---HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHH---HHHHHHHHHHHHHHHHHHC
T ss_conf 04057999999878887799888839-999999---9999999999999999983
No 9
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=82.44 E-value=1.6 Score=21.48 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999974----895799997217999789999998481999999999999979999999998
Q gi|254781217|r 8 KERIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLAS 70 (162)
Q Consensus 8 ~el~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEile 70 (162)
..+.+.-++.+. .|.|++.||+.-|++..|||+... +.+++-.. +.....+.+.+.+.+
T Consensus 6 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~-~k~~Ll~~---~~~~~~~~~~~~~~~ 68 (75)
T d2id6a1 6 DAILKAAVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFK-NKEELYYQ---AYMSVTEKLQKEFEN 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHS-SHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 9999999999998393516799999884998889988887-99999999---999999999999999
No 10
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=82.37 E-value=1.6 Score=21.47 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHHHHHHHH----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH
Q ss_conf 9999999974----89579999721799978999999848199999999
Q gi|254781217|r 10 RIDNILASFS----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE 54 (162)
Q Consensus 10 l~d~Ic~~Ia----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~ 54 (162)
+.+.-++.+. .|.|++.||+.-|++..|||+... +.+++-....
T Consensus 8 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~-~K~~L~~~~~ 55 (73)
T d1t56a1 8 ILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFP-SKEAVLLTLL 55 (73)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHHHHHH
T ss_conf 99999999997591507799999986988889988884-9999999999
No 11
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=82.20 E-value=1.5 Score=21.74 Aligned_cols=44 Identities=16% Similarity=0.041 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH
Q ss_conf 99999997489579999721799978999999848199999999
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE 54 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~ 54 (162)
.+-+++.=-.|.|++.||+.-|++..+||+......+++-....
T Consensus 12 ~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~F~~~Ke~L~~~~~ 55 (73)
T d1sgma1 12 SRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAV 55 (73)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999849241779999998688877999985998999999999
No 12
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=82.05 E-value=0.64 Score=24.10 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 99999997489579999721799978999999848
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
.++|...-..|.+-++|++..|+.++|||+-|.+.
T Consensus 8 ~~~V~~L~~~G~gat~IAk~lgI~R~SVYR~L~~~ 42 (43)
T d1gdta1 8 RDAVLNMWQQGLGASHISKTMNIARSTVYKVINES 42 (43)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 99999999948989999999798799999998601
No 13
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=77.66 E-value=2.3 Score=20.48 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=29.0
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 999999748957999972179997899999984819999
Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
-.++.+-+.|-|++.|++.-|++..|||++... .+++-
T Consensus 11 ~~l~~~~G~~~t~~~Ia~~agvs~~~~Y~~F~~-K~~L~ 48 (70)
T d2hkua1 11 TELFLEHGEGVPITQICAAAGAHPNQVTYYYGS-KERLF 48 (70)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHSS-HHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCHHHHHHCCCC-HHHHH
T ss_conf 999876135744999998878885368730899-99999
No 14
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=75.63 E-value=2.6 Score=20.12 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=27.8
Q ss_pred HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 99997489579999721799978999999848199999
Q gi|254781217|r 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 14 Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
+.+.=-.|.|++.||+.-|++..|||+.... .+++-.
T Consensus 14 ~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~~-K~~L~~ 50 (71)
T d1jt6a1 14 FIKNGYNATTTGEIVKLSESSKGNLYYHFKT-KENLFL 50 (71)
T ss_dssp HHHHCTTTCCHHHHHHHTTCCHHHHHHHHSS-HHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHH
T ss_conf 9985914067999999878587599888849-999999
No 15
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=74.65 E-value=2.3 Score=20.43 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=26.1
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHH
Q ss_conf 895799997217999789999998481999999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~ 52 (162)
.+.|++.||+.-|++..|||+... +.+++-..
T Consensus 24 ~~~t~~~Ia~~agvs~~~~y~~F~-~k~~L~~~ 55 (75)
T d3c07a1 24 DRTTMRAIAQEAGVSVGNAYYYFA-GKEHLIQG 55 (75)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCS-SHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC-CHHHHHHH
T ss_conf 407799999987939879998985-99999999
No 16
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=73.39 E-value=1.4 Score=21.87 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
--+||..|+.|.|...|+...|++..||...+..
T Consensus 17 E~~vl~~l~~G~s~~eIA~~l~iS~~TV~~~~~~ 50 (70)
T d1yioa1 17 EQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHN 50 (70)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999982899999998979799999999999
No 17
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=72.78 E-value=3 Score=19.67 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=34.6
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 895799997217999789999998481999999999999979999999998652
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVVE 73 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIad 73 (162)
.|.|++.||+.-|++..|||+... +.+++ +..+.+...+.+.+.+.+.++
T Consensus 30 ~~~ti~~Ia~~agvs~~t~Y~~F~-~K~~L---~~~~~~~~~~~~~~~l~~~~e 79 (81)
T d1rkta1 30 ELTTMKDVVEESGFSRGGVYLYFS-STEEM---FRRIIETGLDEGLRKLDKSAE 79 (81)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCS-CHHHH---HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHHHHC
T ss_conf 517799999986949889988884-99999---999999999999999999875
No 18
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=72.14 E-value=1.6 Score=21.56 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 299999999999748957999972179997899999984
Q gi|254781217|r 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 6 yt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+|+ .--+|+..++.|.|...|+...+++..|+...+.+
T Consensus 5 Lt~-rE~~vl~l~~~G~s~~eIA~~l~iS~~TV~~~~~~ 42 (65)
T d1l3la1 5 LDP-KEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLRE 42 (65)
T ss_dssp CCH-HHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 489-99999999993698889999978889999999999
No 19
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=71.08 E-value=1.8 Score=21.21 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=31.6
Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 4299999999999748957999972179997899999984
Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.+|+.- -+|+..++.|.|...|+...|++..||...+..
T Consensus 6 ~LT~rE-~~vl~ll~~G~s~~eIA~~l~iS~~TV~~~~~~ 44 (67)
T d1a04a1 6 QLTPRE-RDILKLIAQGLPNKMIARRLDITESTVKVHVKH 44 (67)
T ss_dssp GSCHHH-HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHH-HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 279999-999999996799899999978888899999999
No 20
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=70.41 E-value=3.4 Score=19.33 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=29.1
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHH
Q ss_conf 99999974895799997217999789999998481999999
Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKR 52 (162)
Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~ 52 (162)
+-+++.=-.|.|++.||+.-|++..|||+.... .+++-..
T Consensus 11 ~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~s-K~~L~~~ 50 (70)
T d2gena1 11 ACFSEHGVDATTIEMIRDRSGASIGSLYHHFGN-KERIHGE 50 (70)
T ss_dssp HHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCS-HHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHHH
T ss_conf 999985924087999999879587799989879-9999999
No 21
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=69.69 E-value=1.9 Score=21.05 Aligned_cols=34 Identities=0% Similarity=0.007 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
--+|+..++.|.|...|+...|++..|+...+..
T Consensus 9 E~~vl~l~~~G~s~~eIA~~L~is~~TV~~~~~~ 42 (67)
T d1fsea_ 9 EREVFELLVQDKTTKEIASELFISEKTVRNHISN 42 (67)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999983698999999988888899999999
No 22
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=69.50 E-value=3.6 Score=19.20 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 89579999721799978999999848199999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
.|.|++.||+.-|++..|||+... +.+++-.
T Consensus 26 ~~~t~~~Ia~~agvs~~t~y~~F~-sKe~L~~ 56 (78)
T d2o7ta1 26 DSLTMENIAEQAGVGVATLYRNFP-DRFTLDM 56 (78)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCS-SHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC-CHHHHHH
T ss_conf 406799999883998879999886-9999999
No 23
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=68.56 E-value=3.7 Score=19.07 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=28.5
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 9999999748957999972179997899999984819999
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
.+-|+++=-.|.|++.||+.-|++..|||+... +.+++-
T Consensus 14 ~~l~~~~G~~~~s~~~Ia~~agvs~~~iY~~F~-sK~~L~ 52 (74)
T d2g7sa1 14 RTLIIRGGYNSFSYADISQVVGIRNASIHHHFP-SKSDLV 52 (74)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCS-SHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC-CHHHHH
T ss_conf 999998591506799999987818416988883-999999
No 24
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=66.50 E-value=3.6 Score=19.19 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=35.0
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999997489579999721799978999999848199999999999997999999999865
Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
+-+.+.=-.|.|++.||+.-|++..+||+.... .+++-... .....+.+.+.+.+.+
T Consensus 14 ~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF~~-k~~L~~~~---~~~~~~~~~~~l~~a~ 70 (72)
T d1zk8a1 14 EIADANGVQEVTLASLAQTLGVRSPSLYNHVKG-LQDVRKNL---GIYGIKKLHNRLEEAA 70 (72)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSS-HHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHHHHH---HHHHHHHHHHHHHHHC
T ss_conf 999986977566999999959799999898839-99999999---9999999999999884
No 25
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=66.03 E-value=4.2 Score=18.75 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=25.0
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 4895799997217999789999998481999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
-.|.|++.||+.-|++..|||+... +.+++
T Consensus 22 ~~~~ti~~Ia~~agvs~~t~y~~F~-~K~~l 51 (72)
T d1pb6a1 22 FHGTRLEQIAELAGVSKTNLLYYFP-SKEAL 51 (72)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHSS-SHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH
T ss_conf 2506799999986978679998886-99999
No 26
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=65.95 E-value=2.2 Score=20.59 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=27.8
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 99999748957999972179997899999984819999
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
-+.+.=-.+.|++.||+.-|++..|||+... +.+++-
T Consensus 19 l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~-~Ke~L~ 55 (76)
T d2fd5a1 19 ALLERGAVEPSVGEVMGAAGLTVGGFYAHFQ-SKDALM 55 (76)
T ss_dssp HHHHHTTTSCCHHHHHHHTTCCGGGGGGTCS-CHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCCCCHHHCCC-CHHHHH
T ss_conf 9998491305699999983899550042089-999999
No 27
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=65.79 E-value=3 Score=19.72 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHH
Q ss_conf 9999997489579999721799978999999848199
Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDRED 48 (162)
Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~ee 48 (162)
+.+.+.=-+|-|++.||+.-|++..+||+... +.++
T Consensus 15 ~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~-~k~~ 50 (69)
T d2fq4a1 15 ELLLESGFKAVTVDKIAERAKVSKATIYKWWP-NKAA 50 (69)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS-SHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHH
T ss_conf 99998392407799999997858879999987-9999
No 28
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=65.47 E-value=3 Score=19.70 Aligned_cols=34 Identities=6% Similarity=0.192 Sum_probs=28.0
Q ss_pred HHHHHHHH-CCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 99999974-89579999721799978999999848
Q gi|254781217|r 12 DNILASFS-GGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 12 d~Ic~~Ia-~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
+.|...|. +|-..+..++..||+..|+|+.+.+.
T Consensus 23 ~~I~~aL~~~~gn~~~aA~~LGIsR~TL~rkmkky 57 (60)
T d1umqa_ 23 EHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKR 57 (60)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 99999999966859999999898899999999970
No 29
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=64.23 E-value=4.5 Score=18.53 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=34.5
Q ss_pred HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997489579999721799978999999848199999999999997999999999865
Q gi|254781217|r 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 14 Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
|.+.=-.|.|++.||+.-|++..|||+... +.+++-. .+.....+.+.+.+.+..
T Consensus 14 ~~~~G~~~~ti~~Ia~~agvs~~~~y~~F~-~K~~L~~---~~~~~~~~~~~~~~~~~~ 68 (72)
T d1vi0a1 14 IAENGYHQSQVSKIAKQAGVADGTIYLYFK-NKEDILI---SLFKEKMGQFIERMEEDI 68 (72)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCHHHHHHHCS-SHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_conf 998590415599999987949879988883-9999999---999999999999999998
No 30
>d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]}
Probab=63.89 E-value=4.6 Score=18.49 Aligned_cols=31 Identities=10% Similarity=0.397 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHH
Q ss_conf 579999721799978999999848199999999
Q gi|254781217|r 22 LSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYE 54 (162)
Q Consensus 22 ~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~ 54 (162)
.+--.|+...||+..|+|+|...| ..|-+ |.
T Consensus 37 ktqeqiAeelGisr~tLyrWrt~d-k~FI~-y~ 67 (120)
T d2ao9a1 37 RTQDEMANELGINRTTLWEWRTKN-QDFIA-FK 67 (120)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHC-HHHHH-HH
T ss_pred HHHHHHHHHHCHHHHHHHHHHHCC-HHHHH-HH
T ss_conf 149999999580188898876066-26999-99
No 31
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=63.88 E-value=4.6 Score=18.49 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=27.3
Q ss_pred HHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 999997-4895799997217999789999998481999
Q gi|254781217|r 13 NILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 13 ~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
.++..- -.|.|++.||+.-|++..|||+... +.+++
T Consensus 11 ~lf~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~-~K~~L 47 (69)
T d2i10a1 11 ELFWRQGYEGTSITDLTKALGINPPSLYAAFG-SKRDL 47 (69)
T ss_dssp HHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHC-SHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH
T ss_conf 99998790627799999986878629988885-99999
No 32
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=62.99 E-value=4.7 Score=18.38 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 242999999999997489579999721799978999999848199999
Q gi|254781217|r 4 HKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
..+++..-+-|.-+.-.|.|...|+...|+|..|+...+.+....++.
T Consensus 20 ~~L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~ 67 (71)
T d1rp3a2 20 SKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLRE 67 (71)
T ss_dssp TTSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 779999999999998684899999999798999999999999999998
No 33
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=62.88 E-value=4.8 Score=18.37 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984819999999999999799999999
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENL 68 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEi 68 (162)
.+-|.+.=-+|-|++.||+.-|++..+||+... +.+++ +..+.....+.+.+.+
T Consensus 11 ~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F~-sK~~L---~~~~~~~~~~~~~~~~ 64 (69)
T d2np5a1 11 FDVAAESGLEGASVREVAKRAGVSIGAVQHHFS-TKDEM---FAFALRTLVDKLLARL 64 (69)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS-SHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH---HHHHHHHHHHHHHHHH
T ss_conf 999998491406799999883988879988883-99999---9999999999999999
No 34
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=62.37 E-value=4.9 Score=18.31 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=37.8
Q ss_pred HHCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 242999999999997489579999721799978999999848199999
Q gi|254781217|r 4 HKYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
..+++..-+-|.-+.-.|.|...||...|+|..|+..++.+....+++
T Consensus 17 ~~Lp~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~l~ra~~~Lr~ 64 (68)
T d1or7a1 17 ESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 64 (68)
T ss_dssp HHSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 869999999999999909899999999894999999999999999997
No 35
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=62.23 E-value=4.9 Score=18.29 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=29.0
Q ss_pred HHHHHHHHHHH---CCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999974---8957999972179997899999984
Q gi|254781217|r 9 ERIDNILASFS---GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 9 el~d~Ic~~Ia---~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+.+=.|++.|+ .+.|++.|++.-|+|.+|+++-+..
T Consensus 5 ~r~l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~t 43 (75)
T d1mkma1 5 KKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVV 43 (75)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999985799989999999979199999999999
No 36
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=62.15 E-value=4.9 Score=18.29 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=32.3
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89579999721799978999999848199999999999997999999999865
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
.|.|++.||+.-|++..|||+... +.+++ +........+.+.+.+....
T Consensus 23 ~~~ti~~Ia~~agvs~~s~y~~F~-~K~~l---~~~~~~~~~~~~~~~~~~~~ 71 (79)
T d2fbqa1 23 AETSLRLITSKAGVNLAAVNYHFG-SKKAL---IQAVFSRFLGPFCASLEKEL 71 (79)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHTC-SHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCC-CHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 504099999998828557878776-99999---99779999999999999997
No 37
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=60.16 E-value=5.3 Score=18.06 Aligned_cols=55 Identities=7% Similarity=0.108 Sum_probs=34.7
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999974895799997217999789999998481999999999999979999999998
Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLAS 70 (162)
Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEile 70 (162)
+-|.+.=-.|.|++.||+.-|++..+||+... +.+++- ....+...+.+.+++++
T Consensus 16 ~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~-~K~~L~---~~~~~~~~~~~~~~v~~ 70 (75)
T d2hyja1 16 EIASEEGLDGITIGRLAEELEMSKSGVHKHFG-TKETLQ---ISTLDKAFVDFWHRVVE 70 (75)
T ss_dssp HHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCS-SHHHHH---HHHHHHHHHHHHHHHTG
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 99997590307699999988909899988882-999999---99999999999999888
No 38
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=59.27 E-value=3.9 Score=18.95 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHCCH--------HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999999999974895--------799997217999789999998
Q gi|254781217|r 7 TKERIDNILASFSGGL--------SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 7 t~el~d~Ic~~Ia~G~--------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
-.++++.|.++|.+|. |.+.+|...|++..|+.+=+.
T Consensus 11 y~qi~~~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~Al~ 55 (100)
T d1v4ra1 11 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALA 55 (100)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999849999939883699999998879899999999
No 39
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=59.15 E-value=5.5 Score=17.95 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=31.3
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 489579999721799978999999848199999999999997999999999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLA 69 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEil 69 (162)
-+|.|++.||+.-|++..|||+... +.+++ +..+.....+.+.+.+-
T Consensus 27 ~~~~t~~~Ia~~agvs~~~~Y~~F~-~k~~L---~~~~~~~~~~~~~~~~~ 73 (79)
T d2oi8a1 27 ASALSLNAIAKRMGMSGPALYRYFD-GRDEL---ITELIRDAYRSQADSLR 73 (79)
T ss_dssp TTSCCHHHHHHHTTCCHHHHHTTCS-SHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCHHHHCC-CHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 0306799999986799774455169-99999---99999999999999999
No 40
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=58.25 E-value=5.7 Score=17.85 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=25.3
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 48957999972179997899999984819999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
-.|.|++.||+.-|++..|||++.. +.+++-
T Consensus 20 ~~~~ti~~Ia~~agvs~~~ly~~F~-~K~~L~ 50 (72)
T d2g3ba1 20 IRGLRVNDVAEVAGVSPGLLYYHFK-DRIGLL 50 (72)
T ss_dssp HHHCCHHHHHHHHTSCHHHHHHHHC-SHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHH
T ss_conf 2407799999885969779998883-999999
No 41
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=58.14 E-value=3.7 Score=19.07 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999748957999972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+-.++..-+ |.|++.||+.-|++..|+|+....
T Consensus 10 a~~l~~~~G-~~ti~~Ia~~agvs~~~iY~~F~~ 42 (65)
T d2g7ga1 10 ALELVDRDG-DFRMPDLARHLNVQVSSIYHHAKG 42 (65)
T ss_dssp HHHHHHHHS-SCCHHHHHHHTTSCHHHHHTTSCH
T ss_pred HHHHHHHCC-CCCHHHHHHHHCCCCCCHHHCCCC
T ss_conf 999997867-978999998857061313115899
No 42
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=57.54 E-value=5.9 Score=17.77 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 895799997217999789999998481999
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
+| +++.||+.-|++..|||+... +.+++
T Consensus 31 ~~-t~~~Ia~~agvs~~~~Y~~F~-sK~~L 58 (88)
T d1t33a1 31 HA-TTRDIAALAGQNIAAITYYFG-SKEDL 58 (88)
T ss_dssp GS-CHHHHHHHHTSCHHHHHHHHS-SHHHH
T ss_pred CC-CHHHHHHHHCCCHHHHHCCCC-CHHHH
T ss_conf 16-799999883998443100198-99999
No 43
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=57.52 E-value=3.4 Score=19.32 Aligned_cols=54 Identities=11% Similarity=0.141 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH-----CHHHHHHHHHHHHHHH
Q ss_conf 299999999999748957999972179997899999984-----8199999999999997
Q gi|254781217|r 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ-----DREDLEKRYEQAKQSH 60 (162)
Q Consensus 6 yt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k-----d~eef~e~Y~~Ar~~~ 60 (162)
+|+ .--+||..|+.|.+...|+...+++..|+-..+.. +-....+.+..|+..|
T Consensus 23 LT~-rE~~vl~ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl~~~~~~~lv~~a~~~g 81 (87)
T d1p4wa_ 23 LSP-KESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVS 81 (87)
T ss_dssp CCH-HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHT
T ss_pred CCH-HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 999-99999999992899999987869799999999999999849999999999999968
No 44
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=56.79 E-value=6 Score=17.69 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHCCH--------HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999974895--------799997217999789999998
Q gi|254781217|r 9 ERIDNILASFSGGL--------SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 9 el~d~Ic~~Ia~G~--------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
++++.|.+.|.+|. |.+.+|...|++..|+.+=+.
T Consensus 2 qi~~~i~~~I~~g~l~~G~~LPse~~La~~~~vSr~tvr~Al~ 44 (78)
T d3bwga1 2 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLE 44 (78)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 7999999999849999939993799999998879899999999
No 45
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=55.95 E-value=6.2 Score=17.60 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=25.3
Q ss_pred HHHHHHHCC-HHHHHHHHCCCCCHHH---HHHHHHHCHHHHHH
Q ss_conf 999997489-5799997217999789---99999848199999
Q gi|254781217|r 13 NILASFSGG-LSLSQSCKKHGVTVVS---FHGWVKQDREDLEK 51 (162)
Q Consensus 13 ~Ic~~Ia~G-~SLr~Ick~~gmp~~T---v~~Wl~kd~eef~e 51 (162)
.|+..|..| .|-+.|.+..|++..| +-+|++..+.+++.
T Consensus 49 ~ia~~L~~G~~s~reI~~~~gvs~aTItR~s~~Lk~~~~~~k~ 91 (101)
T d1jhga_ 49 RIIEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQ 91 (101)
T ss_dssp HHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 9999999089679999999698757788999998728858999
No 46
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=55.22 E-value=6.4 Score=17.53 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=27.2
Q ss_pred HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 9999748957999972179997899999984819999
Q gi|254781217|r 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 14 Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
+.+.=-.+.|++.||+.-|++..|||+.... .+++-
T Consensus 15 ~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~~-K~~l~ 50 (68)
T d2d6ya1 15 FARHGIAGARIDRIAAEARANKQLIYAYYGN-KGELF 50 (68)
T ss_dssp HHHHTTTSCCHHHHHHHHTCCHHHHHHHHSS-HHHHH
T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH
T ss_conf 9985925067999998878466289888749-99999
No 47
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=53.04 E-value=5.5 Score=17.97 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=27.7
Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 42999999999997489579999721799978999999848
Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQD 45 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd 45 (162)
.|=+++...-+++ .| +.+++++..|++..|+|+.+.+.
T Consensus 20 ~~Er~~I~~aL~~--~g-n~~~aA~~Lgisr~tL~rKlkk~ 57 (61)
T d1g2ha_ 20 FYEAQVLKLFYAE--YP-STRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp HHHHHHHHHHHHH--SC-SHHHHHHHTTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--CC-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999998--78-99999999798899999999996
No 48
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=51.58 E-value=7.3 Score=17.15 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=27.8
Q ss_pred HHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 999999748957999972179997899999984819999
Q gi|254781217|r 12 DNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 12 d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
+-+.+.=-.|.|++.||+.-|++..|||++... .+++-
T Consensus 10 ~l~~~~G~~~~s~~~Ia~~agvs~~tiy~~F~~-K~~L~ 47 (62)
T d2vkva1 10 ELGNEVGIEGLTTRKLAQKLGVEQPTLYWHVKN-KRALL 47 (62)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSCC-HHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC-HHHHH
T ss_conf 999983935178999998809888899988879-99999
No 49
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=48.15 E-value=7.8 Score=16.96 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHCCH--------HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999974895--------799997217999789999998
Q gi|254781217|r 9 ERIDNILASFSGGL--------SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 9 el~d~Ic~~Ia~G~--------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
-+.+.|.+.|.+|. |.+.+|+..|++..|+.+=+.
T Consensus 7 ~~~e~i~~~I~~g~~~~G~~LPs~~eLa~~~~vSr~tvr~Al~ 49 (74)
T d1hw1a1 7 FAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQ 49 (74)
T ss_dssp HHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999849999949983499999998979899999999
No 50
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=47.31 E-value=3.5 Score=19.23 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=33.3
Q ss_pred HHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 997489579999721799978999999848199999999999997999999999865
Q gi|254781217|r 16 ASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQAKQSHMEHLSENLASVV 72 (162)
Q Consensus 16 ~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~Ar~~~ad~ladEileIa 72 (162)
++=-.+.|++.||+.-||+..|||+..... +++-... .+ +..-+.+.+.+.+
T Consensus 11 ~~G~~~~s~~~IA~~agvs~~~ly~~F~sK-~~L~~a~---~~-~~~~~~e~~~~~~ 62 (65)
T d2np3a1 11 ERGFDATSLRRIAETAGVDQSLVHHFYGTK-ENLFLQA---LE-LPGKIEEAITAAA 62 (65)
T ss_dssp --------------------------CCC--CHHHHHH---HC-HHHHHHHHHHHHT
T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHCCCH-HHHHHHH---HH-HHHHHHHHHHHHC
T ss_conf 879040779999998786887999888799-9999999---99-8740999999870
No 51
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=47.02 E-value=8.6 Score=16.69 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCH--HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999974895--7999972179997899999984
Q gi|254781217|r 9 ERIDNILASFSGGL--SLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 9 el~d~Ic~~Ia~G~--SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+..-+|+..|.+|. |...+++..|++..|+++.+..
T Consensus 5 ~~~~~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r~i~~ 42 (63)
T d1biaa1 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQT 42 (63)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 79999999999789587999999989399999999999
No 52
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=46.59 E-value=8.7 Score=16.65 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=27.1
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHH
Q ss_conf 9999974895799997217999789999998481999
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDL 49 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef 49 (162)
-+.+.=-++.|++.||+.-|++..|||+... +.+++
T Consensus 18 l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~-~k~~L 53 (68)
T d2id3a1 18 ALAADGFDALDLGEIARRAGVGKTTVYRRWG-TPGGL 53 (68)
T ss_dssp HHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC-SHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHH
T ss_conf 9998493407799999997868879999985-99999
No 53
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=46.14 E-value=7.2 Score=17.20 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=16.8
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999974895799997217999789999998
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
.|++.. +|.+...+|+.+|++-.++++=++
T Consensus 59 ~I~~ef-~G~n~~eLA~kY~lS~~~I~~Ii~ 88 (94)
T d1rr7a_ 59 RIWNDF-NGRNVSELTTRYGVTFNTVYKAIR 88 (94)
T ss_dssp HHHHHC-CSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999990-899899999998977999999999
No 54
>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]}
Probab=45.08 E-value=9.1 Score=16.50 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=24.6
Q ss_pred HHHHHHHHHCCHHH----HHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999997489579----99972179997899999984
Q gi|254781217|r 11 IDNILASFSGGLSL----SQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~G~SL----r~Ick~~gmp~~Tv~~Wl~k 44 (162)
...+-..+.+|.|. ..+|...|++.+|+++|...
T Consensus 39 l~~V~~L~~~G~~~~~A~~~VA~~~~vs~~TL~nW~~~ 76 (99)
T d2ezla_ 39 VQAADEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQ 76 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999869708999999999959889999999999
No 55
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=44.59 E-value=8.6 Score=16.67 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHCCH-------HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 9999999999974895-------799997217999789999998
Q gi|254781217|r 7 TKERIDNILASFSGGL-------SLSQSCKKHGVTVVSFHGWVK 43 (162)
Q Consensus 7 t~el~d~Ic~~Ia~G~-------SLr~Ick~~gmp~~Tv~~Wl~ 43 (162)
+..+++.|++.|.+|. |.+.+|+..|++..|+..=+.
T Consensus 4 ~~qi~~~l~~~I~~g~~~~G~~l~~~~La~~~~vSr~tvr~Al~ 47 (69)
T d2hs5a1 4 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQ 47 (69)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999999999982999992966999999998979899999999
No 56
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=44.52 E-value=6.8 Score=17.33 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999999999748957999972179997899999984
Q gi|254781217|r 9 ERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 9 el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.+.+-|-+.+.+.-++..+|+..||+.++|.+..++
T Consensus 7 ~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk~ 42 (54)
T d1bl0a1 7 SILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 42 (54)
T ss_dssp HHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999865479999999999989399999999999
No 57
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=44.48 E-value=9.3 Score=16.44 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=36.8
Q ss_pred CHHHHHHHHHH-HHCCHHHHHHHHCCCCCHHHHHHHHHHC-HHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf 99999999999-7489579999721799978999999848-199999--9999999979999999
Q gi|254781217|r 7 TKERIDNILAS-FSGGLSLSQSCKKHGVTVVSFHGWVKQD-REDLEK--RYEQAKQSHMEHLSEN 67 (162)
Q Consensus 7 t~el~d~Ic~~-Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd-~eef~e--~Y~~Ar~~~ad~ladE 67 (162)
...+.+.|=.. ...|.|...+++..|++.+++.+|.+.. ...+.. +++.+-..-.+.|+.+
T Consensus 8 ~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~l~~~ 72 (77)
T d2b5aa1 8 KRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRK 72 (77)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf 99999999999998099999999897979999999986998999999999999969899998542
No 58
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=44.46 E-value=9.3 Score=16.44 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 29999999999974895799997217999789999998481999999999
Q gi|254781217|r 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEKRYEQ 55 (162)
Q Consensus 6 yt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e~Y~~ 55 (162)
+++..-.-|.-+.-.|.|...|+...|++..||+.-+.+....++ .|..
T Consensus 19 Lpe~QR~vl~L~~~e~ls~~EIA~~lgiS~~aV~~~l~Ra~~~L~-~ye~ 67 (106)
T d1xsva_ 19 LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVE-DYEK 67 (106)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHH
T ss_conf 999999999999990875999999989599999999999999999-9999
No 59
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=43.40 E-value=9.7 Score=16.33 Aligned_cols=35 Identities=20% Similarity=0.440 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999748957999972179997899999984
Q gi|254781217|r 10 RIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 10 l~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-+.-+.+-+..=.|+..+|+.+|++..-|++|...
T Consensus 39 KaaVV~av~~Gl~S~~EAcrrY~LS~eEf~~W~~a 73 (93)
T d2oa4a1 39 KIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSA 73 (93)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999838577999998839999999999999
No 60
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=42.86 E-value=9.9 Score=16.28 Aligned_cols=25 Identities=8% Similarity=0.054 Sum_probs=13.6
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 8957999972179997899999984
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.|-..+..++..||++.|+|+++++
T Consensus 61 ~~gn~~~aA~~LGisR~tL~~klk~ 85 (89)
T d1etxa_ 61 TRGNATRAALMMGINRGTLRKKLKK 85 (89)
T ss_dssp TTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 2996999999989789999999998
No 61
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Probab=41.86 E-value=10 Score=16.18 Aligned_cols=34 Identities=9% Similarity=0.113 Sum_probs=26.1
Q ss_pred HHHHHHHHHC-CHHHHHHHHCCCCCH-HHHHHHHHH
Q ss_conf 9999999748-957999972179997-899999984
Q gi|254781217|r 11 IDNILASFSG-GLSLSQSCKKHGVTV-VSFHGWVKQ 44 (162)
Q Consensus 11 ~d~Ic~~Ia~-G~SLr~Ick~~gmp~-~Tv~~Wl~k 44 (162)
.+..|..|.+ ..|+..|+...|... +.|.++..+
T Consensus 3 l~~a~~lL~~t~~~i~~IA~~~Gf~~~~~F~r~Fk~ 38 (62)
T d1bl0a2 3 MTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKN 38 (62)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999988369999999999879988999999998
No 62
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=40.88 E-value=8.6 Score=16.69 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=26.4
Q ss_pred HHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 99748957999972179997899999984819999
Q gi|254781217|r 16 ASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 16 ~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
+.=-++-|++.||+.-|++..+||+... +.+++-
T Consensus 19 ~~g~~~~si~~ia~~~gvs~~~~y~hF~-~K~~L~ 52 (68)
T d2g7la1 19 AEGLEKVTMRRLAQELDTGPASLYVYVA-NTAELH 52 (68)
T ss_dssp HHCSSSCCHHHHHHHTTSCHHHHTTTCC-SHHHHH
T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHH
T ss_conf 8490307899999997828767628775-999999
No 63
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=40.44 E-value=4.1 Score=18.82 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHHH-----CCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 9999999974-----8957999972179997899999984819999
Q gi|254781217|r 10 RIDNILASFS-----GGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 10 l~d~Ic~~Ia-----~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
+.+.-++.++ +|.|++.|++.-|++..|||+... +.+++-
T Consensus 7 Ii~aa~~l~~e~~G~~~~t~~~Ia~~agvs~~~iy~hF~-~K~~L~ 51 (68)
T d1z0xa1 7 IIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFK-NKQALL 51 (68)
T ss_dssp HHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCS-SHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHH
T ss_conf 999999999876792316799999987726568999629-999999
No 64
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=40.12 E-value=4.6 Score=18.45 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=25.9
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 489579999721799978999999848199999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
-.+-|++.||+.-|++..|||+... +.+++-.
T Consensus 24 ~~~~sv~~Ia~~agvs~~t~Y~~F~-~k~~l~~ 55 (71)
T d2iu5a1 24 YHQISVSDIMQTAKIRRQTFYNYFQ-NQEELLS 55 (71)
T ss_dssp GGGCCHHHHHHHHTSCGGGGGGTCS-SHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCHHHHHCC-CHHHHHH
T ss_conf 6407799999875716458977767-9999999
No 65
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=37.64 E-value=12 Score=15.76 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=27.3
Q ss_pred HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 9999748957999972179997899999984819999
Q gi|254781217|r 14 ILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLE 50 (162)
Q Consensus 14 Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~ 50 (162)
|.+.=-.|.|++.||+.-|++..|||+... +.+++-
T Consensus 17 ~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~-~K~~L~ 52 (73)
T d2fx0a1 17 FGERGYEGTSIQEIAKEAKVNVAMASYYFN-GKENLY 52 (73)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCHHHHHHHHT-SHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHCC-CHHHHH
T ss_conf 998693517699999987848649998884-999999
No 66
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=36.37 E-value=12 Score=15.63 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHC--C-HHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999999999748--9-57999972179997899999984
Q gi|254781217|r 8 KERIDNILASFSG--G-LSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~Ia~--G-~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.+-...|+..|.+ + .|...++...|++..|+++-+..
T Consensus 6 ~eR~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~ 45 (65)
T d1j5ya1 6 QERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAY 45 (65)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999998599785999999979899999999999
No 67
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=34.11 E-value=11 Score=16.08 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=24.8
Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9748957999972179997899999984
Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
|...|.|...+++..|++.+++.+|.+.
T Consensus 10 R~~~g~tq~elA~~~gis~~~is~~e~g 37 (66)
T d1utxa_ 10 REKKKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCC
T ss_conf 9985999999988635579899999869
No 68
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=33.21 E-value=11 Score=15.94 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=24.9
Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9748957999972179997899999984
Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
|...|.|...++...|++..|+.+|-.-
T Consensus 10 R~~~gltQ~elA~~LGvs~~ti~~yE~G 37 (67)
T d2auwa1 10 MHRNNLSLTTAAEALGISRRMVSYYRTA 37 (67)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9995999999999959989999999869
No 69
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=32.96 E-value=9.5 Score=16.41 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=24.6
Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9748957999972179997899999984
Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
|...|.|...++...|++..++.+|.+.
T Consensus 10 R~~~g~sq~elA~~~gvs~~~is~~E~g 37 (63)
T d1r69a_ 10 RIQLGLNQAELAQKVGTTQQSIEQLENG 37 (63)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9984996999999837399999998789
No 70
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=32.41 E-value=12 Score=15.72 Aligned_cols=50 Identities=16% Similarity=0.067 Sum_probs=32.8
Q ss_pred HHHHHHHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHHHHHHHHHH
Q ss_conf 99999999-974895799997217999789999998481-999999999999
Q gi|254781217|r 9 ERIDNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLEKRYEQAKQ 58 (162)
Q Consensus 9 el~d~Ic~-~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~e~Y~~Ar~ 58 (162)
++.+.|-. |...|.|...+++..|++.+++.+|.+-.. ..+..-+.-|+.
T Consensus 9 ~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~ 60 (69)
T d1y7ya1 9 KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATA 60 (69)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9999999999983999999986829989899999879999999999999999
No 71
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=31.63 E-value=9.7 Score=16.34 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=34.3
Q ss_pred HHHHHHHH-HHCCHHHHHHHHCCCCCHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHH
Q ss_conf 99999999-748957999972179997899999984819--99999999999979999
Q gi|254781217|r 10 RIDNILAS-FSGGLSLSQSCKKHGVTVVSFHGWVKQDRE--DLEKRYEQAKQSHMEHL 64 (162)
Q Consensus 10 l~d~Ic~~-Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~e--ef~e~Y~~Ar~~~ad~l 64 (162)
+.+.|=.. -..|.|...+++..|++..|+.+|.+-... ++-..++.+.....+.|
T Consensus 4 i~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~L 61 (65)
T d2croa_ 4 LSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWL 61 (65)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCTTHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999849999999999786794999878779999999999999969989998
No 72
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=31.12 E-value=13 Score=15.49 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=32.6
Q ss_pred HHHCCHHHHHHHHCCCCCHHHHHHHHHH--CHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 9748957999972179997899999984--81999999--9999999799999
Q gi|254781217|r 17 SFSGGLSLSQSCKKHGVTVVSFHGWVKQ--DREDLEKR--YEQAKQSHMEHLS 65 (162)
Q Consensus 17 ~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k--d~eef~e~--Y~~Ar~~~ad~la 65 (162)
+...|.|...+++..|++..++.+|.+- ....+..- ++.+.....+.|+
T Consensus 10 R~~~gltq~~la~~~gis~~~i~~~E~g~~~~ps~~~l~~ia~~l~v~~~~l~ 62 (68)
T d1b0na2 10 RKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLL 62 (68)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHC
T ss_conf 99829999999989797999999998599899999999999999898699983
No 73
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=30.86 E-value=15 Score=15.05 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=27.4
Q ss_pred HHHHHHHHHHC--CHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999748--957999972179997899999984
Q gi|254781217|r 10 RIDNILASFSG--GLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 10 l~d~Ic~~Ia~--G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+=..|+..|.. -.|.+.|.+..|+|.+|+++.+++
T Consensus 6 ~D~~IL~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~ 42 (63)
T d2cfxa1 6 IDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQ 42 (63)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999999839999999999989687899999999
No 74
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=30.69 E-value=15 Score=15.03 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=25.7
Q ss_pred HHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 999997-48957999972179997899999984
Q gi|254781217|r 13 NILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 13 ~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.|...| -.|.||+++.+..|++++|+..=+.+
T Consensus 13 dI~AaL~krG~sLa~lsr~~gls~stl~naL~r 45 (74)
T d1nera_ 13 DVIAGLKKRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHTTSSCCHHHHHHHHSCCHHHHHHTTTS
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 999999996887999999909987899999837
No 75
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=29.09 E-value=14 Score=15.23 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=35.0
Q ss_pred HHHHHHHHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHHHHHHHHHHHHH
Q ss_conf 999999999-974895799997217999789999998481-999999999999979
Q gi|254781217|r 8 KERIDNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLEKRYEQAKQSHM 61 (162)
Q Consensus 8 ~el~d~Ic~-~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~e~Y~~Ar~~~a 61 (162)
..+.+.|=. +...|.|...+++..|++..++.+|.+-.. ..+..-+.-|+..++
T Consensus 7 ~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v 62 (79)
T d1y9qa1 7 SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEA 62 (79)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999982999999999877116489999869989999999999999898
No 76
>d1e0ga_ d.7.1.1 (A:) Membrane-bound lytic murein transclycosylase D, MltD {Escherichia coli [TaxId: 562]}
Probab=28.32 E-value=11 Score=16.09 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=20.8
Q ss_pred HHCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 7489579999721799978999999
Q gi|254781217|r 18 FSGGLSLSQSCKKHGVTVVSFHGWV 42 (162)
Q Consensus 18 Ia~G~SLr~Ick~~gmp~~Tv~~Wl 42 (162)
+..|.||-+|++.+|++...+.+|=
T Consensus 7 V~~GDTl~~IA~~y~vs~~~i~~~N 31 (48)
T d1e0ga_ 7 VRKGDSLSSIAKRHGVNIKDVMRWN 31 (48)
T ss_dssp ECTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ECCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 8999999999999798899999875
No 77
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=28.18 E-value=15 Score=15.12 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999748957999972179997899999984
Q gi|254781217|r 13 NILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 13 ~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.++..|+...|+++.++..||+.+++++-++.
T Consensus 24 ~~~~ai~~~gs~~~AA~~l~~sq~avs~~i~~ 55 (127)
T d1b9ma1 24 SLLKHIALSGSISQGAKDAGISYKSAWDAINE 55 (127)
T ss_dssp HHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999599589998815876299999999
No 78
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=27.94 E-value=17 Score=14.73 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 2999999999997489579999721799978999999848199999
Q gi|254781217|r 6 YTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQDREDLEK 51 (162)
Q Consensus 6 yt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~eef~e 51 (162)
+++..-.-|.-+.-.|.|...|+...|+|..||..-+.+....+++
T Consensus 17 Lp~~qR~v~~L~y~~~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~~ 62 (106)
T d1s7oa_ 17 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILET 62 (106)
T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999989899919999999999896999999999999999999
No 79
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=26.78 E-value=13 Score=15.52 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=26.9
Q ss_pred HHHHHHHH-HHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999-748957999972179997899999984
Q gi|254781217|r 10 RIDNILAS-FSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 10 l~d~Ic~~-Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+.+.|=.. -..|.|...+++..|++.+|+.+|.+.
T Consensus 4 ig~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~g 39 (66)
T d2r1jl1 4 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERS 39 (66)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 999999999985999999999979899999999869
No 80
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.88 E-value=17 Score=14.68 Aligned_cols=39 Identities=3% Similarity=0.067 Sum_probs=27.5
Q ss_pred HCCHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 4299999999999748957999972179997899999984
Q gi|254781217|r 5 KYTKERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 5 Kyt~el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+.+-....- +..|+.-.|++++++..+++.+++.+.+++
T Consensus 5 ~ldl~~L~~-f~~v~~~gs~t~AA~~l~isq~avs~~l~~ 43 (89)
T d2esna1 5 RLDLNLLLV-FDALYRHRNVGTAASELAISASAFSHALGR 43 (89)
T ss_dssp TSCTTHHHH-HHHHHHHSSHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHH-HHHHHHHCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf 589999999-999998099999999877998475599999
No 81
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.01 E-value=18 Score=14.52 Aligned_cols=55 Identities=13% Similarity=-0.044 Sum_probs=35.9
Q ss_pred CCHHHHHHHHH-HHHCCHHHHHHHHCCCCCHHHHHHHHHHCH-HHHHHHHHHHHHHH
Q ss_conf 29999999999-974895799997217999789999998481-99999999999997
Q gi|254781217|r 6 YTKERIDNILA-SFSGGLSLSQSCKKHGVTVVSFHGWVKQDR-EDLEKRYEQAKQSH 60 (162)
Q Consensus 6 yt~el~d~Ic~-~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~kd~-eef~e~Y~~Ar~~~ 60 (162)
.+-++.+.|-. |...|.|...+++..|++.+++.+|-+-.. ..+..-..-|+..+
T Consensus 3 ~~~~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~G~~~p~~~~l~~la~~l~ 59 (78)
T d1x57a1 3 VTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIG 59 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 548999999999998599726788718878999999980677999999999999909
No 82
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=24.02 E-value=20 Score=14.26 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=30.6
Q ss_pred HHHHHHHHHHH-HCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999997-48957999972179997899999984
Q gi|254781217|r 8 KERIDNILASF-SGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 8 ~el~d~Ic~~I-a~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.+++..|-..+ ..|.|.+.+....|++..|+.+|.+-
T Consensus 10 ~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~G 47 (89)
T d2o38a1 10 LRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNY 47 (89)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999995999999999997337089999849
No 83
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=23.38 E-value=18 Score=14.55 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=13.9
Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 8957999972179997899999984
Q gi|254781217|r 20 GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 20 ~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.|-..+..++..|+++.|+|+.+++
T Consensus 63 ~~Gn~~~AA~~LGI~R~TL~~Klk~ 87 (91)
T d1ntca_ 63 TQGHKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp TTTCTTHHHHHTTCCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 5995999999979889999999998
No 84
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.35 E-value=22 Score=14.05 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999748957999972179997899999984
Q gi|254781217|r 10 RIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 10 l~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
+.+-|-+.+..--+|..+|+..||+.++|.+-.++
T Consensus 8 i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk~ 42 (54)
T d1d5ya1 8 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD 42 (54)
T ss_dssp HHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999874489999999999989299999999999
No 85
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=22.33 E-value=22 Score=14.05 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH--HCHHHHHHHHHHHH
Q ss_conf 99999999974895799997217999789999998--48199999999999
Q gi|254781217|r 9 ERIDNILASFSGGLSLSQSCKKHGVTVVSFHGWVK--QDREDLEKRYEQAK 57 (162)
Q Consensus 9 el~d~Ic~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~--kd~eef~e~Y~~Ar 57 (162)
+.+..|-..+..|.|...|++..|.+.++|.+.+. +-|++..+.|..-.
T Consensus 18 e~A~a~~~l~~~g~s~~eiA~~~G~s~~~V~~~l~L~~lp~~v~~~~~~g~ 68 (114)
T d1r71a_ 18 EIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFNTGR 68 (114)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 999999999880998999999977729999999999679999999999499
No 86
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.67 E-value=22 Score=13.96 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=25.6
Q ss_pred HHHHHHHH-CCH-HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999974-895-7999972179997899999984
Q gi|254781217|r 12 DNILASFS-GGL-SLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 12 d~Ic~~Ia-~G~-SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.+|+..|. +|. |.+.+.+..|+|..|+++.+.+
T Consensus 6 ~kIl~~L~~n~r~s~~~lA~~~gls~~~v~~Ri~~ 40 (60)
T d1i1ga1 6 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKA 40 (60)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999998849999999999989299999999999
No 87
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=21.42 E-value=22 Score=13.93 Aligned_cols=48 Identities=6% Similarity=0.016 Sum_probs=35.2
Q ss_pred HCCHHHHHHHHCCCCCHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 4895799997217999789999998481---99999999999997999999
Q gi|254781217|r 19 SGGLSLSQSCKKHGVTVVSFHGWVKQDR---EDLEKRYEQAKQSHMEHLSE 66 (162)
Q Consensus 19 a~G~SLr~Ick~~gmp~~Tv~~Wl~kd~---eef~e~Y~~Ar~~~ad~lad 66 (162)
..|.|...+++..|++.+|+.+|.+-.. .++..+.+.+-...+++++.
T Consensus 12 ~~glsq~~LA~~lGvs~~~is~ie~g~~~~s~~~~~kla~~lgvs~~~~L~ 62 (87)
T d2icta1 12 ELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLN 62 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHH
T ss_pred HCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 869999999999724699999999850179899999999998919999982
No 88
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=20.58 E-value=23 Score=13.82 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=25.5
Q ss_pred HHHHCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99748957999972179997899999984
Q gi|254781217|r 16 ASFSGGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 16 ~~Ia~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
-|...|.|-..+++..|++.+|+.+|-.-
T Consensus 7 ~R~~~gltQ~elA~~lGvs~~tvs~~E~G 35 (62)
T d2ppxa1 7 IRRALKLTQEEFSARYHIPLGTLRDWEQG 35 (62)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99996999999999969899999988779
No 89
>d2coba1 a.4.1.15 (A:8-70) Ligand-dependent corepressor (LCoR) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.21 E-value=24 Score=13.77 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=31.2
Q ss_pred HHCCHHHHHHHHHHHHCC-HHHHHHHHCCCCCHHHHHHHH
Q ss_conf 242999999999997489-579999721799978999999
Q gi|254781217|r 4 HKYTKERIDNILASFSGG-LSLSQSCKKHGVTVVSFHGWV 42 (162)
Q Consensus 4 ~Kyt~el~d~Ic~~Ia~G-~SLr~Ick~~gmp~~Tv~~Wl 42 (162)
++|+++..++-...+..| +|+...-.-.|+|.+|+-.-.
T Consensus 5 R~Yd~d~l~eAv~~V~~G~MSV~rA~~~ygvPHSTLEYKV 44 (63)
T d2coba1 5 RQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKV 44 (63)
T ss_dssp CCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCEEEHHCCCCCCCCCHHHHHHH
T ss_conf 2168889999999998354122303753057750112237
No 90
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=20.19 E-value=24 Score=13.76 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH--CCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 99999999974--8957999972179997899999984
Q gi|254781217|r 9 ERIDNILASFS--GGLSLSQSCKKHGVTVVSFHGWVKQ 44 (162)
Q Consensus 9 el~d~Ic~~Ia--~G~SLr~Ick~~gmp~~Tv~~Wl~k 44 (162)
.+++-|.+... ...|++.+++.-|++.+|+.|.+++
T Consensus 22 ~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kk 59 (83)
T d2o3fa1 22 KLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKS 59 (83)
T ss_dssp HHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999982999998831999999979899899999999
Done!